Query 000139
Match_columns 2062
No_of_seqs 650 out of 2759
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 7.6E-80 2.6E-84 821.3 39.4 473 517-1221 229-712 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.2E-77 4.2E-82 782.7 37.0 504 515-1237 46-572 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 7.7E-71 2.6E-75 696.5 38.1 460 518-1235 31-495 (500)
4 3dmq_A RNA polymerase-associat 100.0 1E-46 3.4E-51 510.7 36.8 432 521-1210 150-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1.6E-42 5.3E-47 428.3 35.7 461 523-1210 8-492 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 4.7E-42 1.6E-46 403.8 20.1 172 1065-1236 95-267 (271)
7 2fwr_A DNA repair protein RAD2 100.0 4.9E-37 1.7E-41 385.4 22.3 376 522-1209 91-470 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-34 7.5E-39 365.9 33.1 146 1064-1215 370-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 9.2E-35 3.1E-39 388.0 28.2 146 1064-1215 611-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 7.3E-35 2.5E-39 394.2 25.0 146 1064-1215 611-770 (936)
11 3hgt_A HDA1 complex subunit 3; 100.0 2.3E-34 7.8E-39 341.3 21.0 132 1064-1202 107-246 (328)
12 3tbk_A RIG-I helicase domain; 100.0 2.1E-33 7.2E-38 356.0 31.3 146 1064-1215 369-528 (555)
13 2ykg_A Probable ATP-dependent 100.0 7.2E-31 2.5E-35 344.5 25.0 130 1065-1199 379-522 (696)
14 2oca_A DAR protein, ATP-depend 100.0 4.4E-30 1.5E-34 325.4 28.7 347 523-1200 112-465 (510)
15 4gl2_A Interferon-induced heli 100.0 1.1E-29 3.8E-34 333.4 27.3 145 1065-1215 380-541 (699)
16 3h1t_A Type I site-specific re 100.0 1.8E-27 6.1E-32 307.5 27.6 162 521-695 175-352 (590)
17 1xti_A Probable ATP-dependent 99.9 3.6E-26 1.2E-30 277.8 28.6 130 1066-1202 236-365 (391)
18 1s2m_A Putative ATP-dependent 99.9 8E-25 2.7E-29 267.4 32.5 123 1066-1194 244-366 (400)
19 1hv8_A Putative ATP-dependent 99.9 4.4E-25 1.5E-29 264.9 26.5 122 1067-1195 226-347 (367)
20 2j0s_A ATP-dependent RNA helic 99.9 1.5E-24 5E-29 266.3 27.5 122 1067-1194 263-384 (410)
21 2z0m_A 337AA long hypothetical 99.9 1E-24 3.5E-29 259.1 23.2 118 1080-1204 218-335 (337)
22 3eiq_A Eukaryotic initiation f 99.9 5.7E-25 2E-29 269.3 20.8 122 1066-1193 266-387 (414)
23 3pey_A ATP-dependent RNA helic 99.9 1.9E-23 6.5E-28 253.2 30.2 120 1067-1192 230-355 (395)
24 1fuu_A Yeast initiation factor 99.9 6.2E-25 2.1E-29 266.9 13.3 109 1081-1193 258-366 (394)
25 3fht_A ATP-dependent RNA helic 99.9 2.8E-22 9.4E-27 245.1 30.3 130 1066-1202 252-387 (412)
26 2i4i_A ATP-dependent RNA helic 99.9 2.7E-22 9.2E-27 246.1 30.0 122 1067-1193 262-383 (417)
27 2db3_A ATP-dependent RNA helic 99.9 3.4E-22 1.2E-26 249.3 30.5 120 1066-1192 287-406 (434)
28 3oiy_A Reverse gyrase helicase 99.9 6.8E-22 2.3E-26 243.9 26.8 115 1066-1190 239-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 99.9 3.7E-21 1.3E-25 245.7 25.6 116 1067-1186 223-338 (523)
30 2eyq_A TRCF, transcription-rep 99.9 8.5E-21 2.9E-25 261.2 27.7 109 1081-1193 811-922 (1151)
31 3sqw_A ATP-dependent RNA helic 99.9 5.1E-20 1.7E-24 237.7 29.1 117 1080-1202 286-405 (579)
32 2v1x_A ATP-dependent DNA helic 99.8 2.7E-20 9.1E-25 240.8 25.2 105 1081-1187 266-370 (591)
33 3i5x_A ATP-dependent RNA helic 99.8 1.6E-19 5.3E-24 231.6 29.4 117 1080-1202 337-456 (563)
34 3fho_A ATP-dependent RNA helic 99.8 1.9E-21 6.4E-26 247.4 11.1 120 1067-1192 344-469 (508)
35 3fmp_B ATP-dependent RNA helic 99.8 9.9E-21 3.4E-25 238.2 11.2 107 1082-1192 333-445 (479)
36 2xgj_A ATP-dependent RNA helic 99.8 7.4E-19 2.5E-23 239.0 29.8 123 1070-1194 330-500 (1010)
37 1gm5_A RECG; helicase, replica 99.8 6.5E-20 2.2E-24 242.7 14.3 156 523-687 367-529 (780)
38 3l9o_A ATP-dependent RNA helic 99.8 4.1E-18 1.4E-22 233.6 29.0 155 521-696 181-341 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.8 1.1E-17 3.7E-22 221.0 26.7 115 1078-1194 248-409 (715)
40 2p6r_A Afuhel308 helicase; pro 99.8 3.5E-18 1.2E-22 225.3 22.0 116 1079-1196 239-391 (702)
41 2zj8_A DNA helicase, putative 99.8 1E-17 3.4E-22 221.7 25.3 115 1080-1196 235-390 (720)
42 4a4z_A Antiviral helicase SKI2 99.7 9.1E-17 3.1E-21 218.5 25.5 157 522-697 37-199 (997)
43 1rif_A DAR protein, DNA helica 99.7 1.1E-17 3.7E-22 196.8 14.4 163 523-701 112-278 (282)
44 4ddu_A Reverse gyrase; topoiso 99.7 4.7E-16 1.6E-20 213.3 30.4 130 523-660 77-210 (1104)
45 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 7.6E-16 2.6E-20 208.9 29.4 156 523-687 270-441 (1038)
46 2fz4_A DNA repair protein RAD2 99.7 5.3E-16 1.8E-20 178.9 15.1 142 521-689 90-233 (237)
47 1gku_B Reverse gyrase, TOP-RG; 99.6 3.5E-15 1.2E-19 204.5 22.6 127 524-663 57-192 (1054)
48 1t5i_A C_terminal domain of A 99.6 3.4E-15 1.2E-19 163.8 15.6 123 1064-1192 15-137 (172)
49 2hjv_A ATP-dependent RNA helic 99.6 2.1E-15 7.3E-20 163.6 13.4 131 1064-1202 19-149 (163)
50 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.7E-15 5.7E-20 168.3 12.6 125 1064-1193 29-153 (185)
51 2p6n_A ATP-dependent RNA helic 99.6 8.9E-15 3E-19 163.5 13.2 123 1064-1193 39-161 (191)
52 1fuk_A Eukaryotic initiation f 99.6 1.1E-14 3.6E-19 158.4 12.6 124 1066-1195 16-139 (165)
53 2rb4_A ATP-dependent RNA helic 99.5 6E-14 2E-18 153.9 15.0 123 1066-1194 20-148 (175)
54 2gxq_A Heat resistant RNA depe 99.5 4.8E-14 1.7E-18 157.0 13.6 155 524-685 23-186 (207)
55 2v6i_A RNA helicase; membrane, 99.5 1.2E-13 4E-18 172.6 18.4 99 1082-1187 171-287 (431)
56 3b6e_A Interferon-induced heli 99.5 3.3E-14 1.1E-18 158.7 12.1 155 522-683 31-216 (216)
57 3eaq_A Heat resistant RNA depe 99.5 1.3E-13 4.4E-18 156.4 16.9 125 1063-1193 14-138 (212)
58 1t6n_A Probable ATP-dependent 99.5 5.6E-14 1.9E-18 158.5 13.4 161 524-691 36-206 (220)
59 2yjt_D ATP-dependent RNA helic 99.2 2.8E-15 9.6E-20 163.8 0.0 123 1065-1193 15-137 (170)
60 1q0u_A Bstdead; DEAD protein, 99.5 2.9E-13 1E-17 152.9 14.9 160 524-691 26-197 (219)
61 1vec_A ATP-dependent RNA helic 99.5 5.5E-13 1.9E-17 148.6 16.6 155 524-685 25-188 (206)
62 2oxc_A Probable ATP-dependent 99.5 3.3E-13 1.1E-17 153.9 14.9 154 524-685 46-209 (230)
63 1yks_A Genome polyprotein [con 99.4 4.7E-13 1.6E-17 167.6 16.3 102 1081-1190 176-296 (440)
64 2pl3_A Probable ATP-dependent 99.4 4.4E-13 1.5E-17 153.0 14.5 154 524-685 47-213 (236)
65 2jlq_A Serine protease subunit 99.4 4.3E-13 1.5E-17 168.5 14.5 94 1082-1182 188-301 (451)
66 3ber_A Probable ATP-dependent 99.4 6.7E-13 2.3E-17 153.8 14.2 155 524-685 65-228 (249)
67 2z83_A Helicase/nucleoside tri 99.4 4.6E-13 1.6E-17 168.6 13.5 107 1082-1196 190-316 (459)
68 1qde_A EIF4A, translation init 99.4 9E-13 3.1E-17 148.9 14.4 154 524-685 36-197 (224)
69 2wv9_A Flavivirin protease NS2 99.4 7E-13 2.4E-17 173.8 15.3 121 1081-1210 409-551 (673)
70 3bor_A Human initiation factor 99.4 1.2E-12 4.2E-17 150.0 13.2 156 524-685 52-215 (237)
71 3i32_A Heat resistant RNA depe 99.4 2.4E-12 8.3E-17 153.6 15.2 125 1064-1194 12-136 (300)
72 1wrb_A DJVLGB; RNA helicase, D 99.4 2.3E-12 8E-17 148.7 14.0 155 524-685 45-220 (253)
73 3rc3_A ATP-dependent RNA helic 99.4 6.7E-12 2.3E-16 164.3 19.8 105 1086-1192 324-444 (677)
74 1nkt_A Preprotein translocase 99.4 8.5E-11 2.9E-15 154.1 28.9 122 1065-1192 443-616 (922)
75 1tf5_A Preprotein translocase 99.3 1.7E-11 5.9E-16 160.8 22.1 122 1065-1192 415-544 (844)
76 3dkp_A Probable ATP-dependent 99.3 1.4E-11 4.7E-16 141.4 17.3 155 524-684 51-220 (245)
77 2whx_A Serine protease/ntpase/ 99.3 1.7E-11 5.8E-16 159.6 19.6 103 1081-1191 354-476 (618)
78 4f92_B U5 small nuclear ribonu 99.3 1.9E-10 6.5E-15 163.7 31.1 151 524-684 926-1093(1724)
79 2fsf_A Preprotein translocase 99.3 5.4E-11 1.8E-15 155.8 22.9 115 1065-1183 424-575 (853)
80 2xau_A PRE-mRNA-splicing facto 99.3 2.9E-11 1E-15 161.0 19.2 111 1081-1195 302-445 (773)
81 3iuy_A Probable ATP-dependent 99.3 2.4E-11 8.2E-16 137.9 14.3 155 524-685 42-209 (228)
82 3jux_A Protein translocase sub 99.2 2.5E-09 8.6E-14 137.8 31.4 123 1064-1192 456-586 (822)
83 3o8b_A HCV NS3 protease/helica 99.2 5.9E-11 2E-15 154.3 16.6 102 1081-1196 395-517 (666)
84 4f92_B U5 small nuclear ribonu 99.2 3.9E-10 1.3E-14 160.5 25.7 150 524-684 79-254 (1724)
85 3fe2_A Probable ATP-dependent 99.2 1.1E-10 3.7E-15 134.2 14.6 154 524-684 51-217 (242)
86 3ly5_A ATP-dependent RNA helic 99.2 8.1E-11 2.8E-15 137.3 13.2 155 524-685 76-243 (262)
87 3fmo_B ATP-dependent RNA helic 99.0 1.2E-09 4E-14 130.3 13.1 155 524-686 114-279 (300)
88 2d7d_A Uvrabc system protein B 98.9 1.7E-08 5.9E-13 132.5 20.7 126 1065-1195 428-558 (661)
89 1c4o_A DNA nucleotide excision 98.9 1.2E-08 4.1E-13 134.0 16.9 125 1065-1194 422-551 (664)
90 2ipc_A Preprotein translocase 98.7 2E-06 6.8E-11 113.2 26.5 147 523-697 78-240 (997)
91 1w0t_A Telomeric repeat bindin 98.7 1.7E-08 5.8E-13 90.1 4.9 49 1660-1717 2-51 (53)
92 3sjm_A Telomeric repeat-bindin 98.6 1.9E-08 6.3E-13 93.4 5.1 50 1659-1717 10-60 (64)
93 1guu_A C-MYB, MYB proto-oncoge 98.6 1.8E-08 6.3E-13 89.5 4.5 47 1660-1717 3-50 (52)
94 1gvd_A MYB proto-oncogene prot 98.6 1.8E-08 6E-13 89.6 3.3 46 1660-1716 3-49 (52)
95 2din_A Cell division cycle 5-l 98.6 7.3E-08 2.5E-12 89.9 7.1 55 1660-1726 9-63 (66)
96 2d9a_A B-MYB, MYB-related prot 98.5 4.4E-08 1.5E-12 89.6 3.7 48 1659-1717 7-55 (60)
97 1ity_A TRF1; helix-turn-helix, 98.5 7.5E-08 2.6E-12 90.6 5.0 52 1659-1719 9-61 (69)
98 2elk_A SPCC24B10.08C protein; 98.5 8.4E-08 2.9E-12 87.3 4.6 47 1660-1716 9-56 (58)
99 1x41_A Transcriptional adaptor 98.5 1.1E-07 3.9E-12 87.0 5.0 47 1660-1717 8-55 (60)
100 2dim_A Cell division cycle 5-l 98.4 1.3E-07 4.3E-12 89.3 3.7 48 1659-1717 8-56 (70)
101 3crv_A XPD/RAD3 related DNA he 98.4 1.2E-06 4.2E-11 112.7 12.9 132 523-660 2-187 (551)
102 3llm_A ATP-dependent RNA helic 98.3 1.9E-06 6.4E-11 98.8 12.7 150 524-686 61-220 (235)
103 2k9n_A MYB24; R2R3 domain, DNA 98.3 5.4E-07 1.8E-11 91.8 7.3 73 1660-1762 1-74 (107)
104 3osg_A MYB21; transcription-DN 98.3 3.8E-07 1.3E-11 95.6 6.0 74 1659-1762 10-83 (126)
105 2cu7_A KIAA1915 protein; nucle 98.3 5.6E-07 1.9E-11 85.4 5.6 53 1659-1722 8-60 (72)
106 1gv2_A C-MYB, MYB proto-oncoge 98.3 4.3E-07 1.5E-11 92.1 4.5 73 1659-1761 3-76 (105)
107 2vl7_A XPD; helicase, unknown 98.3 1.8E-06 6.3E-11 110.9 11.1 101 1069-1175 370-475 (540)
108 3zqc_A MYB3; transcription-DNA 98.2 8.8E-07 3E-11 93.4 5.0 73 1660-1762 2-75 (131)
109 2llk_A Cyclin-D-binding MYB-li 98.2 7.8E-07 2.7E-11 84.5 4.0 46 1659-1716 22-67 (73)
110 2yus_A SWI/SNF-related matrix- 98.2 9.5E-07 3.2E-11 85.3 4.5 46 1659-1715 17-62 (79)
111 1h8a_C AMV V-MYB, MYB transfor 98.1 1.7E-06 5.9E-11 90.8 5.3 73 1659-1761 26-99 (128)
112 2yum_A ZZZ3 protein, zinc fing 98.0 1.7E-06 5.7E-11 82.7 3.2 50 1660-1720 8-63 (75)
113 2k9n_A MYB24; R2R3 domain, DNA 98.0 4E-06 1.4E-10 85.4 5.7 50 1660-1720 53-102 (107)
114 2ckx_A NGTRF1, telomere bindin 98.0 3.9E-06 1.3E-10 81.6 5.0 54 1661-1721 1-55 (83)
115 3osg_A MYB21; transcription-DN 98.0 3E-06 1E-10 88.8 4.0 56 1660-1726 62-117 (126)
116 2ltp_A Nuclear receptor corepr 97.2 1E-06 3.5E-11 87.0 0.0 51 1660-1721 16-66 (89)
117 2roh_A RTBP1, telomere binding 97.9 1E-05 3.4E-10 83.9 7.0 56 1659-1721 30-86 (122)
118 1gv2_A C-MYB, MYB proto-oncoge 97.9 4.5E-06 1.5E-10 84.6 3.2 49 1659-1718 55-103 (105)
119 1h89_C C-MYB, MYB proto-oncoge 97.9 7.9E-06 2.7E-10 88.9 4.9 73 1660-1762 58-131 (159)
120 2juh_A Telomere binding protei 97.8 3.2E-05 1.1E-09 80.1 8.7 56 1659-1721 16-72 (121)
121 3zqc_A MYB3; transcription-DNA 97.8 6.2E-06 2.1E-10 87.0 2.1 53 1660-1723 54-106 (131)
122 4a15_A XPD helicase, ATP-depen 97.8 6.8E-05 2.3E-09 97.9 12.2 84 523-608 2-88 (620)
123 2cqr_A RSGI RUH-043, DNAJ homo 97.7 1.3E-05 4.4E-10 76.2 3.2 48 1659-1717 17-68 (73)
124 2aje_A Telomere repeat-binding 97.7 2.8E-05 9.6E-10 78.7 5.2 56 1659-1721 12-68 (105)
125 1h89_C C-MYB, MYB proto-oncoge 97.7 8.3E-06 2.8E-10 88.7 1.3 72 1660-1761 6-78 (159)
126 1h8a_C AMV V-MYB, MYB transfor 97.6 1.5E-05 5.1E-10 83.7 2.0 49 1659-1718 78-126 (128)
127 2cjj_A Radialis; plant develop 97.6 6.4E-05 2.2E-09 74.7 5.7 60 1659-1729 7-71 (93)
128 1x58_A Hypothetical protein 49 97.2 0.00018 6E-09 65.8 3.8 52 1659-1718 7-58 (62)
129 2eqr_A N-COR1, N-COR, nuclear 97.2 0.00032 1.1E-08 64.5 5.0 51 1650-1714 5-55 (61)
130 1ign_A Protein (RAP1); RAP1,ye 96.8 0.00031 1.1E-08 79.6 1.8 50 1659-1719 7-62 (246)
131 4b3f_X DNA-binding protein smu 96.8 0.0051 1.7E-07 80.8 12.9 153 521-686 186-401 (646)
132 3upu_A ATP-dependent DNA helic 96.6 0.012 4E-07 74.2 14.1 143 523-687 24-167 (459)
133 2cqq_A RSGI RUH-037, DNAJ homo 96.5 0.0027 9.3E-08 60.2 5.3 48 1659-1718 7-58 (72)
134 2gk6_A Regulator of nonsense t 96.4 0.037 1.3E-06 72.4 17.1 150 523-686 179-375 (624)
135 3e1s_A Exodeoxyribonuclease V, 96.1 0.017 5.8E-07 74.8 11.4 132 522-687 187-318 (574)
136 2xzl_A ATP-dependent helicase 96.0 0.043 1.5E-06 73.7 15.3 149 523-686 359-553 (802)
137 2o0j_A Terminase, DNA packagin 95.7 0.058 2E-06 66.6 13.4 156 523-698 162-325 (385)
138 2wjy_A Regulator of nonsense t 95.7 0.067 2.3E-06 71.9 15.0 150 523-686 355-551 (800)
139 3cpe_A Terminase, DNA packagin 95.5 0.054 1.9E-06 70.4 12.8 148 522-687 161-316 (592)
140 1fex_A TRF2-interacting telome 95.0 0.016 5.3E-07 53.0 3.9 46 1660-1716 2-57 (59)
141 1w36_D RECD, exodeoxyribonucle 94.8 0.07 2.4E-06 69.6 10.9 147 526-688 151-302 (608)
142 2orw_A Thymidine kinase; TMTK, 94.2 0.077 2.6E-06 58.7 7.7 35 546-583 6-40 (184)
143 1wgx_A KIAA1903 protein; MYB D 94.1 0.022 7.5E-07 54.1 2.7 50 1657-1717 5-58 (73)
144 2vl7_A XPD; helicase, unknown 93.7 0.13 4.5E-06 66.1 9.8 129 523-659 6-188 (540)
145 3lfu_A DNA helicase II; SF1 he 93.7 0.32 1.1E-05 63.4 13.3 79 523-607 8-92 (647)
146 2b8t_A Thymidine kinase; deoxy 93.1 0.23 7.8E-06 56.9 9.4 41 541-584 10-50 (223)
147 2iw5_B Protein corest, REST co 92.9 0.042 1.4E-06 62.0 2.9 45 1660-1715 133-177 (235)
148 2ebi_A DNA binding protein GT- 92.8 0.048 1.6E-06 53.3 2.8 59 1660-1725 4-72 (86)
149 3hm5_A DNA methyltransferase 1 92.0 0.14 4.9E-06 50.7 5.0 58 1660-1723 30-87 (93)
150 2d7d_A Uvrabc system protein B 91.7 0.42 1.4E-05 63.0 10.4 77 523-605 11-89 (661)
151 1c4o_A DNA nucleotide excision 91.4 0.29 1E-05 64.5 8.6 77 523-605 7-85 (664)
152 2j9r_A Thymidine kinase; TK1, 90.2 1 3.5E-05 51.2 10.4 35 547-584 32-66 (214)
153 3vkw_A Replicase large subunit 90.2 0.31 1.1E-05 61.1 6.7 107 546-686 164-271 (446)
154 1xx6_A Thymidine kinase; NESG, 89.9 0.44 1.5E-05 53.2 7.1 35 546-583 11-45 (191)
155 1a5t_A Delta prime, HOLB; zinc 87.9 2.1 7.2E-05 51.4 11.6 47 525-571 3-52 (334)
156 3syl_A Protein CBBX; photosynt 87.6 1.1 3.6E-05 52.6 8.6 38 545-582 69-107 (309)
157 1l8q_A Chromosomal replication 86.3 2.2 7.7E-05 50.5 10.5 36 544-582 38-73 (324)
158 2orv_A Thymidine kinase; TP4A 83.5 2.8 9.7E-05 48.2 9.1 35 547-584 23-57 (234)
159 1sxj_D Activator 1 41 kDa subu 82.9 1.5 5.1E-05 52.1 6.9 26 544-569 59-84 (353)
160 3u61_B DNA polymerase accessor 82.5 2.9 9.8E-05 49.5 9.1 41 646-686 105-147 (324)
161 2p65_A Hypothetical protein PF 82.4 4.6 0.00016 42.7 9.8 27 543-569 43-69 (187)
162 1njg_A DNA polymerase III subu 82.3 4.5 0.00016 44.3 10.1 44 526-569 28-71 (250)
163 4a15_A XPD helicase, ATP-depen 81.6 3.6 0.00012 53.8 10.3 88 1070-1163 435-527 (620)
164 3h4m_A Proteasome-activating n 81.5 1.4 4.7E-05 51.1 5.7 25 542-566 50-74 (285)
165 2qby_B CDC6 homolog 3, cell di 80.9 3.4 0.00012 49.7 9.1 44 526-569 25-71 (384)
166 1ug2_A 2610100B20RIK gene prod 80.4 2.6 9.1E-05 41.3 6.1 54 1660-1724 33-89 (95)
167 3bos_A Putative DNA replicatio 80.3 4.6 0.00016 44.7 9.3 40 530-569 37-78 (242)
168 3ec2_A DNA replication protein 80.3 8.3 0.00028 41.5 11.0 47 526-572 16-67 (180)
169 2chg_A Replication factor C sm 80.0 13 0.00043 40.2 12.5 43 526-569 22-64 (226)
170 1jbk_A CLPB protein; beta barr 79.9 15 0.0005 38.7 12.7 27 543-569 43-69 (195)
171 3eie_A Vacuolar protein sortin 78.0 2.3 8E-05 50.6 6.3 23 544-566 52-74 (322)
172 1iqp_A RFCS; clamp loader, ext 78.0 6.5 0.00022 45.9 10.0 43 526-569 30-72 (327)
173 3vfd_A Spastin; ATPase, microt 77.9 5 0.00017 49.1 9.3 41 543-589 148-188 (389)
174 3n70_A Transport activator; si 76.4 3.9 0.00013 42.8 6.8 30 535-564 16-45 (145)
175 2v1u_A Cell division control p 76.2 4.4 0.00015 48.4 8.0 44 526-569 24-70 (387)
176 2r2a_A Uncharacterized protein 75.2 1.6 5.3E-05 49.0 3.4 22 546-567 8-29 (199)
177 1w4r_A Thymidine kinase; type 74.3 8 0.00027 43.4 8.8 34 547-583 24-57 (195)
178 2qp9_X Vacuolar protein sortin 74.1 2.8 9.4E-05 50.9 5.5 24 544-567 85-108 (355)
179 2bjv_A PSP operon transcriptio 73.7 9.9 0.00034 43.5 9.9 31 535-565 21-51 (265)
180 4b4t_J 26S protease regulatory 73.1 6.5 0.00022 48.8 8.4 44 543-592 182-225 (405)
181 2qz4_A Paraplegin; AAA+, SPG7, 73.1 8.4 0.00029 43.6 9.0 36 544-585 40-75 (262)
182 3uk6_A RUVB-like 2; hexameric 72.6 5.2 0.00018 48.0 7.4 53 526-582 49-105 (368)
183 3e2i_A Thymidine kinase; Zn-bi 72.5 18 0.0006 41.3 11.1 35 547-584 32-66 (219)
184 4a69_C Nuclear receptor corepr 71.9 2.7 9.3E-05 41.8 3.9 42 1660-1712 43-84 (94)
185 2z4s_A Chromosomal replication 71.1 14 0.00048 46.1 11.1 26 544-569 131-156 (440)
186 1sxj_B Activator 1 37 kDa subu 70.8 8.1 0.00028 45.0 8.4 25 545-569 44-68 (323)
187 1jr3_A DNA polymerase III subu 70.7 21 0.00073 42.4 12.2 44 526-569 21-64 (373)
188 1ofh_A ATP-dependent HSL prote 70.6 12 0.0004 43.4 9.6 25 543-567 50-74 (310)
189 2xag_B REST corepressor 1; ami 69.4 3 0.0001 52.5 4.3 55 1660-1725 380-443 (482)
190 2lr8_A CAsp8-associated protei 71.2 1.1 3.7E-05 41.8 0.0 50 1660-1721 14-66 (70)
191 2crg_A Metastasis associated p 67.6 4.7 0.00016 37.9 4.3 43 1660-1713 8-51 (70)
192 1xwi_A SKD1 protein; VPS4B, AA 67.3 5.5 0.00019 47.6 6.0 38 544-586 46-83 (322)
193 2q6t_A DNAB replication FORK h 66.9 10 0.00034 47.4 8.4 60 532-593 189-248 (444)
194 2gno_A DNA polymerase III, gam 66.8 17 0.00057 43.3 9.9 37 529-565 2-40 (305)
195 1fnn_A CDC6P, cell division co 66.8 34 0.0012 40.8 12.8 42 526-567 22-68 (389)
196 2zan_A Vacuolar protein sortin 66.0 10 0.00034 47.5 8.2 39 544-587 168-206 (444)
197 1d2n_A N-ethylmaleimide-sensit 64.9 24 0.00082 40.5 10.6 22 545-566 66-87 (272)
198 3cf0_A Transitional endoplasmi 64.3 8.8 0.0003 45.2 6.9 25 542-566 48-72 (301)
199 3co5_A Putative two-component 63.2 3.5 0.00012 43.1 2.8 23 541-563 25-47 (143)
200 3k1j_A LON protease, ATP-depen 62.2 18 0.0006 47.1 9.7 53 536-588 53-116 (604)
201 2yqk_A Arginine-glutamic acid 62.1 6.1 0.00021 36.4 3.8 42 1660-1712 9-51 (63)
202 2qby_A CDC6 homolog 1, cell di 62.0 12 0.00039 44.7 7.4 45 526-570 25-72 (386)
203 4b4c_A Chromodomain-helicase-D 61.7 9.3 0.00032 42.9 6.1 59 1660-1718 134-196 (211)
204 3te6_A Regulatory protein SIR3 61.5 54 0.0018 39.3 12.9 44 526-569 25-71 (318)
205 3d8b_A Fidgetin-like protein 1 60.4 9.5 0.00033 46.1 6.3 24 543-566 117-140 (357)
206 4eef_G F-HB80.4, designed hema 60.0 2.7 9.3E-05 39.9 1.1 43 1660-1713 20-66 (74)
207 2r6a_A DNAB helicase, replicat 59.6 16 0.00055 45.7 8.4 59 532-592 192-250 (454)
208 1sxj_A Activator 1 95 kDa subu 59.5 23 0.00079 45.0 9.9 24 544-567 78-101 (516)
209 2chq_A Replication factor C sm 59.2 5.7 0.0002 46.2 4.0 24 545-568 40-63 (319)
210 1sxj_E Activator 1 40 kDa subu 57.3 31 0.0011 40.9 10.1 42 645-686 133-175 (354)
211 4b4t_H 26S protease regulatory 56.9 14 0.00047 46.6 7.0 43 542-590 242-284 (467)
212 1uaa_A REP helicase, protein ( 55.1 15 0.00052 48.2 7.4 68 524-597 2-71 (673)
213 4b4t_K 26S protease regulatory 54.8 13 0.00044 46.5 6.3 41 543-589 206-246 (428)
214 3t15_A Ribulose bisphosphate c 53.9 12 0.00041 44.0 5.5 24 544-567 37-60 (293)
215 1r6b_X CLPA protein; AAA+, N-t 53.4 56 0.0019 43.4 12.5 28 542-569 206-233 (758)
216 1gm5_A RECG; helicase, replica 53.1 42 0.0014 45.1 11.1 97 1063-1160 398-498 (780)
217 2qen_A Walker-type ATPase; unk 53.0 37 0.0013 39.7 9.6 36 526-564 17-52 (350)
218 3b9p_A CG5977-PA, isoform A; A 52.5 10 0.00035 44.1 4.6 24 543-566 54-77 (297)
219 1ojl_A Transcriptional regulat 52.4 44 0.0015 39.5 10.1 42 541-585 23-64 (304)
220 4fcw_A Chaperone protein CLPB; 52.3 23 0.00077 41.2 7.6 34 545-581 49-82 (311)
221 1sxj_C Activator 1 40 kDa subu 51.3 16 0.00056 43.5 6.2 40 530-569 31-72 (340)
222 2kjq_A DNAA-related protein; s 50.0 22 0.00075 37.6 6.3 27 542-568 35-61 (149)
223 1w5s_A Origin recognition comp 49.9 32 0.0011 41.5 8.6 44 526-569 27-78 (412)
224 3hu3_A Transitional endoplasmi 49.7 17 0.00058 46.2 6.3 24 542-565 237-260 (489)
225 3oiy_A Reverse gyrase helicase 49.7 59 0.002 39.5 10.9 95 1063-1158 45-145 (414)
226 4dzz_A Plasmid partitioning pr 49.2 1.3E+02 0.0044 32.4 12.6 112 549-699 8-121 (206)
227 4iej_A DNA methyltransferase 1 47.8 21 0.00072 35.5 5.1 57 1660-1722 30-86 (93)
228 2ce7_A Cell division protein F 47.6 33 0.0011 43.4 8.4 23 544-566 50-72 (476)
229 2w0m_A SSO2452; RECA, SSPF, un 47.5 1.4E+02 0.0047 32.6 12.6 48 541-591 21-68 (235)
230 4b4t_L 26S protease subunit RP 47.0 11 0.00039 47.1 4.0 42 543-590 215-256 (437)
231 3bgw_A DNAB-like replicative h 46.7 31 0.0011 43.1 8.0 55 532-589 186-240 (444)
232 4b4t_I 26S protease regulatory 46.7 21 0.00071 44.7 6.2 44 543-592 216-259 (437)
233 3ipz_A Monothiol glutaredoxin- 46.6 47 0.0016 33.1 7.8 65 1073-1138 9-79 (109)
234 3pvs_A Replication-associated 46.4 22 0.00074 44.6 6.4 22 545-566 52-73 (447)
235 2cvh_A DNA repair and recombin 45.4 48 0.0016 36.2 8.4 54 532-591 8-64 (220)
236 3zyw_A Glutaredoxin-3; metal b 42.9 58 0.002 32.8 7.8 64 1074-1138 8-77 (111)
237 1xp8_A RECA protein, recombina 42.7 42 0.0014 41.0 8.0 55 532-589 61-117 (366)
238 3gx8_A Monothiol glutaredoxin- 42.6 79 0.0027 32.3 8.9 71 1074-1145 8-87 (121)
239 1qvr_A CLPB protein; coiled co 41.2 54 0.0019 44.3 9.5 27 543-569 191-217 (854)
240 2zr9_A Protein RECA, recombina 41.2 46 0.0016 40.3 8.0 55 532-589 48-104 (349)
241 1nlf_A Regulatory protein REPA 41.0 22 0.00077 41.1 5.1 53 541-595 28-89 (279)
242 2r62_A Cell division protease 40.0 4.6 0.00016 46.3 -1.0 25 543-567 44-68 (268)
243 1um8_A ATP-dependent CLP prote 40.0 62 0.0021 39.0 9.0 25 543-567 72-96 (376)
244 3hjh_A Transcription-repair-co 39.6 39 0.0013 42.8 7.3 69 1080-1162 380-448 (483)
245 2yan_A Glutaredoxin-3; oxidore 38.8 75 0.0026 31.1 7.8 57 1073-1130 8-70 (105)
246 3sxu_A DNA polymerase III subu 38.7 1.5E+02 0.005 31.8 10.5 39 1065-1103 22-60 (150)
247 1u6t_A SH3 domain-binding glut 37.6 33 0.0011 35.6 5.1 45 1085-1129 2-53 (121)
248 2dr3_A UPF0273 protein PH0284; 36.9 71 0.0024 35.4 8.2 50 542-594 22-71 (247)
249 3bh0_A DNAB-like replicative h 36.2 45 0.0015 39.6 6.7 59 532-593 57-115 (315)
250 3kl4_A SRP54, signal recogniti 35.7 1.2E+02 0.0039 38.1 10.5 32 547-581 101-132 (433)
251 2z43_A DNA repair and recombin 35.5 95 0.0032 36.8 9.4 55 531-585 94-152 (324)
252 2wul_A Glutaredoxin related pr 35.3 1.1E+02 0.0039 31.4 8.6 64 1082-1145 19-89 (118)
253 2fna_A Conserved hypothetical 34.6 2.3E+02 0.0078 32.9 12.5 36 526-566 18-53 (357)
254 2r8r_A Sensor protein; KDPD, P 34.2 42 0.0014 38.5 5.7 46 543-591 6-53 (228)
255 3dm5_A SRP54, signal recogniti 33.8 83 0.0028 39.5 8.8 134 547-701 104-241 (443)
256 1u94_A RECA protein, recombina 33.7 65 0.0022 39.1 7.7 50 532-584 50-101 (356)
257 1hqc_A RUVB; extended AAA-ATPa 33.5 1.1E+02 0.0038 35.5 9.5 42 526-567 17-62 (324)
258 2w58_A DNAI, primosome compone 33.1 60 0.0021 35.2 6.7 25 544-568 55-79 (202)
259 1ign_A Protein (RAP1); RAP1,ye 32.8 41 0.0014 38.7 5.2 31 1681-1722 173-203 (246)
260 3nhm_A Response regulator; pro 32.7 1.8E+02 0.0063 28.3 9.7 94 1080-1179 25-123 (133)
261 2wem_A Glutaredoxin-related pr 32.3 84 0.0029 32.1 7.1 48 1082-1129 19-73 (118)
262 1pjr_A PCRA; DNA repair, DNA r 32.2 56 0.0019 43.4 7.3 68 523-596 10-79 (724)
263 3pfi_A Holliday junction ATP-d 30.9 1.1E+02 0.0038 35.9 8.9 39 526-564 34-76 (338)
264 2eyq_A TRCF, transcription-rep 29.7 1.6E+02 0.0055 41.3 11.4 100 1058-1158 626-731 (1151)
265 4aqr_D Calcium-transporting AT 29.6 2E+02 0.0067 26.2 7.8 49 52-103 6-54 (57)
266 3pxi_A Negative regulator of g 29.5 49 0.0017 44.0 6.1 23 545-567 523-545 (758)
267 1n0w_A DNA repair protein RAD5 29.4 2.6E+02 0.0088 30.7 11.2 53 532-584 12-68 (243)
268 3i42_A Response regulator rece 29.2 97 0.0033 30.2 6.9 104 1069-1181 17-125 (127)
269 1wp9_A ATP-dependent RNA helic 28.2 1.8E+02 0.006 35.1 10.3 90 1063-1158 32-131 (494)
270 2zpa_A Uncharacterized protein 28.1 90 0.0031 41.2 7.9 54 523-584 174-227 (671)
271 3crv_A XPD/RAD3 related DNA he 26.7 2.1E+02 0.0073 36.4 11.1 98 1068-1175 378-484 (551)
272 3cf2_A TER ATPase, transitiona 26.5 32 0.0011 46.3 3.5 41 543-589 511-551 (806)
273 4ddu_A Reverse gyrase; topoiso 26.2 1.3E+02 0.0045 42.0 9.5 96 1062-1158 101-202 (1104)
274 1q57_A DNA primase/helicase; d 26.0 1E+02 0.0035 38.8 7.9 59 532-592 231-289 (503)
275 1wik_A Thioredoxin-like protei 25.5 1.1E+02 0.0037 30.2 6.4 49 1082-1130 14-68 (109)
276 2wci_A Glutaredoxin-4; redox-a 25.1 1.2E+02 0.0042 31.7 6.9 48 1083-1130 35-88 (135)
277 1zu4_A FTSY; GTPase, signal re 25.1 1.5E+02 0.0051 35.4 8.6 31 548-581 110-140 (320)
278 3a10_A Response regulator; pho 25.0 3.1E+02 0.011 25.9 9.6 90 1081-1177 24-116 (116)
279 2zts_A Putative uncharacterize 24.6 1.1E+02 0.0037 33.9 7.0 52 542-595 29-80 (251)
280 3hr8_A Protein RECA; alpha and 24.3 85 0.0029 38.2 6.4 54 532-588 48-103 (356)
281 2px0_A Flagellar biosynthesis 24.1 1.2E+02 0.0041 35.7 7.5 33 547-581 109-141 (296)
282 2qxy_A Response regulator; reg 24.1 2.5E+02 0.0085 27.8 9.0 99 1080-1185 26-128 (142)
283 2qgz_A Helicase loader, putati 24.0 96 0.0033 36.7 6.7 26 543-568 152-177 (308)
284 2xb0_X Chromo domain-containin 23.9 46 0.0016 39.1 3.7 27 1661-1687 169-196 (270)
285 1r48_A Proline/betaine transpo 23.9 61 0.0021 26.4 3.2 26 104-131 7-32 (33)
286 3u4q_B ATP-dependent helicase/ 23.9 49 0.0017 46.3 4.7 42 546-588 5-46 (1166)
287 1t6n_A Probable ATP-dependent 23.6 4.1E+02 0.014 28.8 11.4 92 1063-1158 60-164 (220)
288 2i1q_A DNA repair and recombin 23.6 1.8E+02 0.006 34.3 8.8 36 531-566 85-121 (322)
289 2y9y_A Imitation switch protei 23.3 99 0.0034 37.8 6.5 62 1660-1724 228-297 (374)
290 3h5i_A Response regulator/sens 23.1 3.4E+02 0.012 26.9 9.8 94 1081-1177 28-123 (140)
291 3eqz_A Response regulator; str 23.0 2.8E+02 0.0096 26.9 9.0 96 1082-1182 27-129 (135)
292 2j48_A Two-component sensor ki 22.9 1.6E+02 0.0054 27.7 6.9 90 1080-1177 23-117 (119)
293 4b4t_M 26S protease regulatory 22.5 29 0.00099 43.4 1.8 42 543-590 215-256 (434)
294 3cmu_A Protein RECA, recombina 22.5 1.2E+02 0.004 44.9 8.1 57 531-590 718-776 (2050)
295 4a1f_A DNAB helicase, replicat 21.9 1.4E+02 0.0046 36.2 7.4 58 531-591 34-91 (338)
296 1v5w_A DMC1, meiotic recombina 21.9 2.5E+02 0.0084 33.6 9.7 53 532-584 110-166 (343)
297 1gku_B Reverse gyrase, TOP-RG; 21.5 1.7E+02 0.0059 40.6 9.2 94 1062-1158 79-181 (1054)
298 1lv7_A FTSH; alpha/beta domain 21.3 7.8E+02 0.027 27.3 13.4 37 543-585 45-81 (257)
299 2rdm_A Response regulator rece 21.3 3E+02 0.01 26.7 8.7 96 1080-1181 27-126 (132)
300 3cg4_A Response regulator rece 20.8 5E+02 0.017 25.4 10.5 103 1069-1178 21-127 (142)
301 2oxc_A Probable ATP-dependent 20.7 3.5E+02 0.012 29.8 10.1 90 1063-1158 70-172 (230)
302 3kwp_A Predicted methyltransfe 20.7 9.1E+02 0.031 28.4 14.1 115 1070-1191 77-203 (296)
303 1ofc_X ISWI protein; nuclear p 20.1 84 0.0029 37.5 4.9 61 1660-1723 212-280 (304)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-80 Score=821.30 Aligned_cols=473 Identities=41% Similarity=0.717 Sum_probs=390.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 517 FPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 517 vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
.|+...++|||||+.||+||+.++.++.||||||+||||||+|+|++|.++....+..+|+|||||.+++.||..||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 45555789999999999999999999999999999999999999999999887778889999999999999999999999
Q ss_pred CCCCeEEEEeCChhhHHhhhhc-c--------CCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 597 CPAFKILTYFGSAKERKFKRQG-W--------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 597 ~P~lkVl~y~Gs~kerk~~r~g-w--------~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
+|++++++|+|....+...+.. + .....++|+||||+++.++...|....|++|||||||++||..++.++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~ 388 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYE 388 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHH
Confidence 9999999999998877654321 1 234578999999999999999999999999999999999999999999
Q ss_pred HHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhh
Q 000139 668 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 747 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRR 747 (2062)
++..+++.+||+|||||++|++.|||+||+||+|+.|.....|.- .. ........+.+|+.+|+||++||
T Consensus 389 ~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~--~~--------~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 389 SLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDF--EN--------QDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----------C--------CTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcc--cc--------cchhHHHHHHHHHHHHhHHHhhh
Confidence 999999999999999999999999999999999999987666641 11 11223456889999999999999
Q ss_pred hhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH-HHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccc
Q 000139 748 LKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ-ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 826 (2062)
Q Consensus 748 tK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~-~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~ 826 (2062)
+|.+|.+.||++.+++++|+||+.|+.+|..++...... .....+...++++++++||++||||.|+.....
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~------- 531 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE------- 531 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH-------
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH-------
Confidence 999999999999999999999999999999887642211 111234456799999999999999998632100
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCC
Q 000139 827 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 906 (2062)
Q Consensus 827 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 906 (2062)
. . +..
T Consensus 532 --------~---~------------------------------------------------~~~---------------- 536 (800)
T 3mwy_W 532 --------R---V------------------------------------------------LQK---------------- 536 (800)
T ss_dssp --------H---H------------------------------------------------CCC----------------
T ss_pred --------H---H------------------------------------------------HHh----------------
Confidence 0 0 000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000139 907 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 986 (2062)
Q Consensus 907 t~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~ 986 (2062)
++. ... ..
T Consensus 537 ---------------------------------------~~~---------~~~------------------------~~ 544 (800)
T 3mwy_W 537 ---------------------------------------FGD---------GKM------------------------TR 544 (800)
T ss_dssp ---------------------------------------C-------------C------------------------CS
T ss_pred ---------------------------------------ccc---------ccc------------------------cH
Confidence 000 000 00
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000139 987 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 1066 (2062)
Q Consensus 987 ~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSG 1066 (2062)
.... +.+...||
T Consensus 545 ~~~~--------------------------------------------------------------------~~l~~~s~ 556 (800)
T 3mwy_W 545 ENVL--------------------------------------------------------------------RGLIMSSG 556 (800)
T ss_dssp HHHH--------------------------------------------------------------------HHHHHTCH
T ss_pred HHHH--------------------------------------------------------------------HHhhhcCh
Confidence 0000 00112489
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG 1145 (2062)
|+..|..+|.+++..|+||||||||+.|+++|+.+|...|+.|++|+|+++..+|+.++++||. +...+|||+||++||
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 557789999999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1221 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~ 1221 (2062)
+||||+.||+||+||++|||+.+.||+||||||||+++|+|||||+++||||+|++++.+|+.|.+++|+.|....
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-77 Score=782.70 Aligned_cols=504 Identities=31% Similarity=0.510 Sum_probs=413.9
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHh-----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC----CCcEEEEecCCc
Q 000139 515 TKFPFLLKFPLREYQHIGLDWLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAHLACEKGI----WGPHLIVVPTSV 585 (2062)
Q Consensus 515 t~vP~lLk~~LRpYQ~~GL~WLv~l~-----~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~----~Gp~LIVvPtSL 585 (2062)
..+|+.+...|||||++||.||+..+ ..+.||||||+||||||+|+|++|.++....+. .+++|||||+++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence 34567788999999999999999876 456789999999999999999999998765432 356999999999
Q ss_pred HHHHHHHHHHHCCC-CeEEEEeCC-hhhHHhhhhccCCC----CCceEEEEehhhhhhchhhhhccCeeEEEEcCccccC
Q 000139 586 MLNWETEFLKWCPA-FKILTYFGS-AKERKFKRQGWLKP----NSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIK 659 (2062)
Q Consensus 586 L~QW~~Efkkw~P~-lkVl~y~Gs-~kerk~~r~gw~k~----~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IK 659 (2062)
+.||..||.+|+|. +.++.++|. ..........|... ..++|+||||+++..+...+....|++|||||||+||
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecC
Confidence 99999999999975 666666654 33332222222221 3578999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcc-----cccccccHHHHH
Q 000139 660 NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMV-----EGQEKVNKEVVD 734 (2062)
Q Consensus 660 N~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~-----eg~~~~n~~~i~ 734 (2062)
|..++.++++..+++.+||+|||||+||++.|||+|++||+|++|++...|..+|..|+.... ..........+.
T Consensus 206 n~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 206 NSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp TTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred ChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998874211 111122345678
Q ss_pred HHHHhhhhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhh-cchhhHHHHHHHHHHHhCCCcc
Q 000139 735 RLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLAS-ANFFGMISVIMQLRKVCNHPDL 813 (2062)
Q Consensus 735 rLhkvLrpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~s-gn~~silnvLmqLRKvCNHP~L 813 (2062)
.|+.+++||++||+|.+|.+.||+|.+++++|+||+.|+.+|+.++........+.. .....++..+++||++||||.|
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 899999999999999999999999999999999999999999998865433222222 2346788999999999999987
Q ss_pred cCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccc
Q 000139 814 FEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEE 893 (2062)
Q Consensus 814 fe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~ 893 (2062)
+.... .. ..
T Consensus 366 ~~~~~---------------------------------------------------------------~~---~~----- 374 (644)
T 1z3i_X 366 IYEKC---------------------------------------------------------------LT---GE----- 374 (644)
T ss_dssp HHHHH---------------------------------------------------------------HH---TC-----
T ss_pred HHHHH---------------------------------------------------------------hc---cc-----
Confidence 41100 00 00
Q ss_pred cCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhh
Q 000139 894 VGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSY 973 (2062)
Q Consensus 894 ~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~ 973 (2062)
..+...
T Consensus 375 --------------------------------------------------~~~~~~------------------------ 380 (644)
T 1z3i_X 375 --------------------------------------------------EGFDGA------------------------ 380 (644)
T ss_dssp --------------------------------------------------TTCTTG------------------------
T ss_pred --------------------------------------------------chhhhH------------------------
Confidence 000000
Q ss_pred ccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhccc
Q 000139 974 LYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQV 1053 (2062)
Q Consensus 974 ~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 1053 (2062)
.+ .+|.. +.
T Consensus 381 -----------------------~~----~~~~~-------~~------------------------------------- 389 (644)
T 1z3i_X 381 -----------------------LD----LFPQN-------YS------------------------------------- 389 (644)
T ss_dssp -----------------------GG----TSCSS-------CC-------------------------------------
T ss_pred -----------------------Hh----hcccc-------cc-------------------------------------
Confidence 00 00000 00
Q ss_pred ccCCccccccccchHHHHHHHHHHhhh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 000139 1054 YFPDRRLIQFDCGKLQELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNP 1132 (2062)
Q Consensus 1054 ~fPd~rLiq~dSGKLq~L~~LLrkLks-~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~ 1132 (2062)
........+||+..|..+|..++. .++||||||||+.++++|+.+|...|+.|++|+|+++..+|+.++++||.+.
T Consensus 390 ---~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 390 ---TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp ---SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred ---ccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 000011248999999999999874 5899999999999999999999999999999999999999999999999854
Q ss_pred -CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000139 1133 -KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD 1211 (2062)
Q Consensus 1133 -~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~ 1211 (2062)
..+|||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+|||||+.+||||+|++++..|+.|.+
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~ 546 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSS 546 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccccCChhhhhcCCC
Q 000139 1212 LVIQSGGYNTEFFKKLDPMELFSGHR 1237 (2062)
Q Consensus 1212 ~vIq~g~ft~~~fk~~di~eLF~~~~ 1237 (2062)
.+++++......|+..++.+||....
T Consensus 547 ~v~~~~~~~~~~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 547 CVVDEEQDVERHFSLGELRELFSLNE 572 (644)
T ss_dssp CCCSCSSSCCCSSCHHHHHHHTCCCS
T ss_pred HHhcCcchhhcCCCHHHHHHHhCCCC
Confidence 99988776667788888899998653
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.7e-71 Score=696.55 Aligned_cols=460 Identities=33% Similarity=0.567 Sum_probs=398.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 518 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 518 P~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
|..++..|||||++|+.||..++..+.||||||+||+|||+++|+++..+.. .+..+++|||||++++.||..||.+|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHHC
Confidence 7788899999999999999988888999999999999999999999988764 455679999999999999999999999
Q ss_pred CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceE
Q 000139 598 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRR 677 (2062)
Q Consensus 598 P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~R 677 (2062)
|.+++.+|+|.... .....++|+||||+++..+.. +....|++|||||||+++|..+++++++..+.+.+|
T Consensus 110 ~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~ 180 (500)
T 1z63_A 110 PHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 180 (500)
T ss_dssp TTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred CCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcE
Confidence 99999999987632 122468899999999998865 777899999999999999999999999999999999
Q ss_pred EEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhh--Hhhc
Q 000139 678 ILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD--VEKQ 755 (2062)
Q Consensus 678 LLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~D--Vekq 755 (2062)
|+|||||++|++.|||++++||.|++|++...|..+|..|+.. .......+|+.+++||++||+|.+ +...
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~-------~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKK-------GDNMAKEELKAIISPFILRRTKYDKAIIND 253 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHT-------TCHHHHHHHHHHHTTTEECCCTTCHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccc-------ccHHHHHHHHHHHhhHeeeecccccchhhc
Confidence 9999999999999999999999999999999999999887642 234456789999999999999976 6779
Q ss_pred CCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHh--hhcchhhHHHHHHHHHHHhCCCcccCCCCccccccccccccccc
Q 000139 756 LPMKQEHVIYCRLSKRQRNLYEDFIASSETQATL--ASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLS 833 (2062)
Q Consensus 756 LP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L--~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~ 833 (2062)
||++.+++++|+|++.|+.+|+.+.......... .......++..+++||++|+||.++....
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~--------------- 318 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--------------- 318 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC---------------
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc---------------
Confidence 9999999999999999999999876543211000 01123457788899999999987631000
Q ss_pred ccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHH
Q 000139 834 SSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKI 913 (2062)
Q Consensus 834 s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l 913 (2062)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHh
Q 000139 914 RKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRM 993 (2062)
Q Consensus 914 ~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l 993 (2062)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHH
Q 000139 994 IGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAI 1073 (2062)
Q Consensus 994 ~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~ 1073 (2062)
.....++|+..|..
T Consensus 319 ------------------------------------------------------------------~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 319 ------------------------------------------------------------------QSVRRSGKMIRTME 332 (500)
T ss_dssp ------------------------------------------------------------------CCSTTCHHHHHHHH
T ss_pred ------------------------------------------------------------------chhhcchhHHHHHH
Confidence 00013679999999
Q ss_pred HHHHhhhCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCccc
Q 000139 1074 LLRKLKSDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVG 1152 (2062)
Q Consensus 1074 LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ 1152 (2062)
+|.++...|+|+|||++++.++++|..+|... |+.+.+++|+++..+|+.++++|++++.+.|+|+||++||+||||++
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 99999999999999999999999999999885 99999999999999999999999998788889999999999999999
Q ss_pred CCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCChhhh
Q 000139 1153 ADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMEL 1232 (2062)
Q Consensus 1153 ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eL 1232 (2062)
|++||+||++|||..+.||+||+||+||+++|+||+|++++||||+|++++..|+.+.+.+++++......++..++.+|
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l 492 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKV 492 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHH
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887755555666677778
Q ss_pred hcC
Q 000139 1233 FSG 1235 (2062)
Q Consensus 1233 F~~ 1235 (2062)
|..
T Consensus 493 ~~~ 495 (500)
T 1z63_A 493 IEL 495 (500)
T ss_dssp HSC
T ss_pred hcc
Confidence 864
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-46 Score=510.73 Aligned_cols=432 Identities=18% Similarity=0.218 Sum_probs=326.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~l 600 (2062)
.+.+|+|||..++.|++.. .+.++||||+||+|||+++++++..+.. .+..+++|||||++++.||..||.+|+ ++
T Consensus 150 ~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l 225 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NL 225 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CC
T ss_pred CCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CC
Confidence 4578999999999999873 3678999999999999999999988765 566679999999999999999999988 68
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch---hhhhccCeeEEEEcCccccCChhhH---HHHHHHcc--
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS---KVFKRKKWKYLILDEAHLIKNWKSQ---RWQTLLNF-- 672 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~---~~L~r~~W~lVILDEAH~IKN~~Sk---~~qaL~~L-- 672 (2062)
++.+|+|........ .+......++|+|+||+++.++. ..+....|++|||||||+++|..+. .++++..+
T Consensus 226 ~v~v~~~~~~~~~~~-~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERYAEAQH-DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHHHHHHH-TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchhhhhhh-hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 888888766543222 21123356899999999998763 4467789999999999999987644 48888887
Q ss_pred cCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCC----------CC-------------cc-------
Q 000139 673 NSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPI----------SG-------------MV------- 722 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPi----------sg-------------~~------- 722 (2062)
++.++|+|||||++|++.|+|++++||.|..|.+...|..++.... .+ ..
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 7889999999999999999999999999999999998887753210 00 00
Q ss_pred --cc----cccccHHHHHHHHHhh-----hhhhhhhhhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhh
Q 000139 723 --EG----QEKVNKEVVDRLHNVL-----RPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLAS 791 (2062)
Q Consensus 723 --eg----~~~~n~~~i~rLhkvL-----rpFmLRRtK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~s 791 (2062)
.. ...........+..++ ..+++|+++..+. .+|.+..+.+.+.+++.++.+|+....
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~---------- 453 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGI---------- 453 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHH----------
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhh----------
Confidence 00 0000011112222233 3456777777764 799999999999999998888763100
Q ss_pred cchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccccCCCCCCcchhhccccccccccccccCccchhh
Q 000139 792 ANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDE 871 (2062)
Q Consensus 792 gn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e 871 (2062)
.+.. .+ . ..
T Consensus 454 ---------------~~~~-~~----------~--------------------------------------------~~- 462 (968)
T 3dmq_A 454 ---------------MGAR-KS----------A--------------------------------------------ED- 462 (968)
T ss_dssp ---------------TTCC-SS----------G--------------------------------------------GG-
T ss_pred ---------------hhhh-hh----------h--------------------------------------------HH-
Confidence 0000 00 0 00
Q ss_pred hhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhH
Q 000139 872 LNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLR 951 (2062)
Q Consensus 872 ~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~ 951 (2062)
... .|
T Consensus 463 ------------------------------------~~~----------------------------~~----------- 467 (968)
T 3dmq_A 463 ------------------------------------RAR----------------------------DM----------- 467 (968)
T ss_dssp ------------------------------------GTH----------------------------HH-----------
T ss_pred ------------------------------------HHh----------------------------hh-----------
Confidence 000 00
Q ss_pred hHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhh
Q 000139 952 ELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKE 1031 (2062)
Q Consensus 952 ~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~ 1031 (2062)
.+| ..+. ..++
T Consensus 468 -----l~p-----------------e~~~--------------~~l~--------------------------------- 478 (968)
T 3dmq_A 468 -----LYP-----------------ERIY--------------QEFE--------------------------------- 478 (968)
T ss_dssp -----HCS-----------------GGGT--------------TTTT---------------------------------
T ss_pred -----cCh-----------------HHHH--------------HHhh---------------------------------
Confidence 000 0000 0000
Q ss_pred hhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH-HcCCcEE
Q 000139 1032 KCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS-LYGYTYM 1110 (2062)
Q Consensus 1032 ~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~-~~Gi~y~ 1110 (2062)
.+.......+.|+..|..+|.. ..+.|+|||+++..+++.|...|. ..|+.+.
T Consensus 479 ------------------------~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~ 532 (968)
T 3dmq_A 479 ------------------------GDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAA 532 (968)
T ss_dssp ------------------------SSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEE
T ss_pred ------------------------hhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEE
Confidence 0000011246899999999987 578899999999999999999999 4699999
Q ss_pred EecCCCCHHHHHHHHHHHhcCC-CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEE
Q 000139 1111 RLDGSTQPEERQTLMQRFNTNP-KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1189 (2062)
Q Consensus 1111 RLDGsTs~eqRq~lmerFN~D~-~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRL 1189 (2062)
+++|+++..+|+.++++|+.+. .+.| |++|.++|+||||+.|++||+||++|||....|++||+||+||++.|+||++
T Consensus 533 ~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 533 VFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999999999999865 3555 6789999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHH
Q 000139 1190 ISESTIEENILKKANQKRALD 1210 (2062)
Q Consensus 1190 Ise~TIEE~Ilkka~qKr~L~ 1210 (2062)
++++|+|++|++.+..|..+.
T Consensus 612 ~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 612 YLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp EETTSHHHHHHHHHHHTTCCS
T ss_pred cCCChHHHHHHHHHHhCCCce
Confidence 999999999999988776543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-42 Score=428.30 Aligned_cols=461 Identities=18% Similarity=0.226 Sum_probs=296.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC--CC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC--PA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~--P~ 599 (2062)
.+|||||..++.|++. + ++||+++||+|||+++++++..+.. +..+++|||||+ +++.||..+|.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 5799999999999876 3 8999999999999999999887765 334689999998 79999999999998 66
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCChhhHH--HHHHH-cccC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQR--WQTLL-NFNS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~~Sk~--~qaL~-~L~a 674 (2062)
.++..++|......... .| ..++|+|+||+.+..... .+...+|++|||||||++++..+.. ...+. ..+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~---~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AW---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HH---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hc---cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 79999999865443211 11 257899999999987643 4456689999999999999753322 22222 2357
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCCCCC---CChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhh
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMPHIF---QSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD 751 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF---~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~D 751 (2062)
.++|+|||||. |+..+++.++.+|.+..+ .....+...|..+.. ..............+...+.+++.+|++..
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIR--FEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCC--EEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCc--eeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999 778888888888865432 222222222211111 001111123456678889999999999887
Q ss_pred HhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcch---hhHHHHHHHHHHHhCCCcccCCCCcccccccccc
Q 000139 752 VEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANF---FGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGI 828 (2062)
Q Consensus 752 VekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~---~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~ 828 (2062)
....+..... ..++.....-....+... ........ ......++.++....+...
T Consensus 234 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 291 (494)
T 1wp9_A 234 AETGLLESSS----PDIPKKEVLRAGQIINEE---MAKGNHDLRGLLLYHAMALKLHHAIELLET--------------- 291 (494)
T ss_dssp HHHTSSSCCC----TTSCHHHHHHHHHHHHHH---HTTTCCSTTTHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhccccccC----CCcchhHHHHHHHHHHHH---hhccccchhhHHHHHHHHHHHHHHHHHHHh---------------
Confidence 7665543322 223333221111111100 00001111 1112222222222111000
Q ss_pred cccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCch
Q 000139 829 DSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTS 908 (2062)
Q Consensus 829 ~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~ 908 (2062)
. +..
T Consensus 292 -----------------------------------------------~-----------------------------~~~ 295 (494)
T 1wp9_A 292 -----------------------------------------------Q-----------------------------GLS 295 (494)
T ss_dssp -----------------------------------------------T-----------------------------CHH
T ss_pred -----------------------------------------------h-----------------------------cHH
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHH
Q 000139 909 IFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVE 988 (2062)
Q Consensus 909 ~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~e 988 (2062)
.+......+.. .... . .......+. .. .
T Consensus 296 ~~~~~~~~l~~----~~~~--------------~---~~~~~~~~~-----------------------------~~--~ 323 (494)
T 1wp9_A 296 ALRAYIKKLYE----EAKA--------------G---STKASKEIF-----------------------------SD--K 323 (494)
T ss_dssp HHHHHHHHHHH----HHHT--------------T---CCHHHHHHH-----------------------------TS--H
T ss_pred HHHHHHHHHHH----hhcc--------------c---cchhhhhhh-----------------------------hh--H
Confidence 00000000000 0000 0 000000000 00 0
Q ss_pred HHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchH
Q 000139 989 RFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKL 1068 (2062)
Q Consensus 989 rl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKL 1068 (2062)
.+......+.. .......++|+
T Consensus 324 ~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~k~ 345 (494)
T 1wp9_A 324 RMKKAISLLVQ----------------------------------------------------------AKEIGLDHPKM 345 (494)
T ss_dssp HHHHHHHHHHH----------------------------------------------------------HHHHTCSCHHH
T ss_pred HHHHHHHHHHH----------------------------------------------------------HHhcCCCChHH
Confidence 00000000000 00001347899
Q ss_pred HHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecC--------CCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1069 QELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDG--------STQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1069 q~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDG--------sTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
..|..+|..+. ..++|+|||+++..+++.|..+|...|+.+.+++| +++..+|+.++++|+.+ .+.| |
T Consensus 346 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~v-L 423 (494)
T 1wp9_A 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNV-L 423 (494)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSE-E
T ss_pred HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-CceE-E
Confidence 99999999976 57899999999999999999999999999999999 89999999999999974 4555 7
Q ss_pred EeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000139 1139 LSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD 1210 (2062)
Q Consensus 1139 LSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~ 1210 (2062)
++|.++|+||||++|++||+||++|||....|++||+||.|| +++|+|++++|+||+|+.++..|..+.
T Consensus 424 v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999998 899999999999999999999888764
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-42 Score=403.77 Aligned_cols=172 Identities=33% Similarity=0.488 Sum_probs=148.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
++|+..|..+|..+...|+||||||||+.++++|+.+|... |+.|++|+|+++..+|+.++++|+.++.++|||+||++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 68999999999999999999999999999999999999885 99999999999999999999999998788899999999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEF 1223 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~ 1223 (2062)
||+||||++|++||+||+||||..+.||+||+||+||+++|+||+|++.+||||+|++++..|+.+.+.++++++.....
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~ 254 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITE 254 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988765566
Q ss_pred cccCChhhhhcCC
Q 000139 1224 FKKLDPMELFSGH 1236 (2062)
Q Consensus 1224 fk~~di~eLF~~~ 1236 (2062)
|+..++.+||...
T Consensus 255 ~~~~~l~~l~~~~ 267 (271)
T 1z5z_A 255 LSTEELRKVIELS 267 (271)
T ss_dssp SCHHHHHHHHSCC
T ss_pred CCHHHHHHHhccC
Confidence 7777788888753
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.9e-37 Score=385.40 Aligned_cols=376 Identities=20% Similarity=0.252 Sum_probs=265.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~l 600 (2062)
...|+|||..++.++.. +.++||+++||+|||++++.++..+ .+++|||||+ +|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 46899999999998765 4569999999999999998887765 3589999999 8999999999996 56
Q ss_pred e-EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEE
Q 000139 601 K-ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 679 (2062)
Q Consensus 601 k-Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLL 679 (2062)
+ +.+++|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 7 8888876532 35799999999987765543 45999999999999987644 3556678899999
Q ss_pred EeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhh-cCCC
Q 000139 680 LTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEK-QLPM 758 (2062)
Q Consensus 680 LTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVek-qLP~ 758 (2062)
|||||.+++-.+ ..|..++.|++.++...++.. .+++
T Consensus 224 lSATp~~~~~~~------------------------------------------~~l~~~~~~~~~~~~~~~l~~~~l~~ 261 (472)
T 2fwr_A 224 LTATFEREDGRH------------------------------------------EILKEVVGGKVFELFPDSLAGKHLAK 261 (472)
T ss_dssp EESCCCCTTSGG------------------------------------------GSHHHHTCCEEEECCHHHHTSCCCCS
T ss_pred EecCccCCCCHH------------------------------------------HHHHHHhCCeEeecCHHHHhcCcCCC
Confidence 999999754211 123445566666666666644 3777
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccc
Q 000139 759 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCS 838 (2062)
Q Consensus 759 K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~ 838 (2062)
.....+.+.+++.++..|+.+.... +.......+....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~--------------------- 299 (472)
T 2fwr_A 262 YTIKRIFVPLAEDERVEYEKREKVY---------------------KQFLRARGITLRR--------------------- 299 (472)
T ss_dssp EEECCEEECCCHHHHHHTTTTTHHH---------------------HSCSSSCCCTTTC---------------------
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHHH---------------------HHHHHhcCccccc---------------------
Confidence 7777899999999999988654321 1111111110000
Q ss_pred cCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHH
Q 000139 839 MLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALL 918 (2062)
Q Consensus 839 ~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~ 918 (2062)
...+ ..++..
T Consensus 300 ---~~~~--------~~~~~~----------------------------------------------------------- 309 (472)
T 2fwr_A 300 ---AEDF--------NKIVMA----------------------------------------------------------- 309 (472)
T ss_dssp ---CSSS--------TTTTTT-----------------------------------------------------------
T ss_pred ---hhhH--------HHHHHH-----------------------------------------------------------
Confidence 0000 000000
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhh
Q 000139 919 EERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVE 998 (2062)
Q Consensus 919 eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie 998 (2062)
+...+.....+ . .....
T Consensus 310 ---------------------~~~~~~~~~~~-----------------------~-----------~~~~~-------- 326 (472)
T 2fwr_A 310 ---------------------SGYDERAYEAL-----------------------R-----------AWEEA-------- 326 (472)
T ss_dssp ---------------------TCCSSSSSTTT-----------------------H-----------HHHHH--------
T ss_pred ---------------------hccCHHHHHHH-----------------------H-----------HHHHH--------
Confidence 00000000000 0 00000
Q ss_pred hhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHh
Q 000139 999 SFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL 1078 (2062)
Q Consensus 999 ~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkL 1078 (2062)
..+....++|+..|..+|..
T Consensus 327 -----------------------------------------------------------~~~~~~~~~k~~~l~~~l~~- 346 (472)
T 2fwr_A 327 -----------------------------------------------------------RRIAFNSKNKIRKLREILER- 346 (472)
T ss_dssp -----------------------------------------------------------HHHHHSCSHHHHHHHHHHHH-
T ss_pred -----------------------------------------------------------HHHhhcChHHHHHHHHHHHh-
Confidence 00001135789999999987
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1079 KSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1079 ks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
..++|+|||+++..+++.|...|. +..++|.++..+|+.++++|++ +.+.| |++|.+++.|||++.+++||+
T Consensus 347 -~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~v-Lv~T~~~~~Gldlp~~~~Vi~ 418 (472)
T 2fwr_A 347 -HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRA-IVSSQVLDEGIDVPDANVGVI 418 (472)
T ss_dssp -TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSSCCCSSSCSCCBSEEEE
T ss_pred -CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcCchhcCcccccCcEEEE
Confidence 468999999999999999999884 4568999999999999999987 55666 688999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhccCCc-CcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000139 1159 YDSDWNPAMDQQAQDRCHRIGQT-REVHIYRLISESTIEENILKKANQKRAL 1209 (2062)
Q Consensus 1159 yD~dWNPa~d~QA~gRahRIGQT-RdV~VYRLIse~TIEE~Ilkka~qKr~L 1209 (2062)
||++|||....|++||++|+||. +.|.||+|++++|+||+|.++..+|+.+
T Consensus 419 ~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 419 MSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred ECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 99999999999999999999999 8999999999999999999998877765
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-34 Score=365.92 Aligned_cols=146 Identities=19% Similarity=0.282 Sum_probs=87.4
Q ss_pred ccchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1064 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
.++|+..|..+|.... ..++|+|||++++.+++.|..+|... |+.+..++|+++..+|+.++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4789999999998876 66899999999999999999999765 667777788899999999999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1209 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L 1209 (2062)
.++.+.| |++|+++|+||||+++++||+||++|||....|++|| ||.+++.+|.|++++|++++ +.....|..+
T Consensus 450 ~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~ 523 (556)
T 4a2p_A 450 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 523 (556)
T ss_dssp ----CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHH
T ss_pred ccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHH
Confidence 8677776 6889999999999999999999999999999999999 66789999999999999999 5566777777
Q ss_pred HHHHHh
Q 000139 1210 DDLVIQ 1215 (2062)
Q Consensus 1210 ~~~vIq 1215 (2062)
...++.
T Consensus 524 ~~~~i~ 529 (556)
T 4a2p_A 524 MNKAVE 529 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.2e-35 Score=387.96 Aligned_cols=146 Identities=19% Similarity=0.285 Sum_probs=92.8
Q ss_pred ccchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHH------------cCCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1064 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISL------------YGYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~------------~Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
.++|+..|..+|.... ..++|+|||++++.+++.|..+|.. .|+.+..++|+++..+|+.++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998754 5679999999999999999999976 4777888899999999999999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1209 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L 1209 (2062)
.++.+.| |++|+++|.||||++|++||+||++|||....||+|| ||.+++.+|+|++.+|++++ +.....|..+
T Consensus 691 ~~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~ 764 (797)
T 4a2q_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEM 764 (797)
T ss_dssp ---CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHH
T ss_pred ccCCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHH
Confidence 8677776 6899999999999999999999999999999999999 66689999999999999999 6666777777
Q ss_pred HHHHHh
Q 000139 1210 DDLVIQ 1215 (2062)
Q Consensus 1210 ~~~vIq 1215 (2062)
...++.
T Consensus 765 ~~~~i~ 770 (797)
T 4a2q_A 765 MNKAVE 770 (797)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.3e-35 Score=394.24 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1064 DCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
.++|+..|..+|.... ..++|+|||++++.+++.|..+|... |+.+..++|+++..+|+.++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999999874 56899999999999999999999976 666777788899999999999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1209 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L 1209 (2062)
.++.+.| |++|+++|+||||++|++||+||++|||....||+|| ||.+++.+|+|++.+|++++++ ....|..+
T Consensus 691 ~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~ 764 (936)
T 4a2w_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEM 764 (936)
T ss_dssp ---CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred ccCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHH
Confidence 8677776 7899999999999999999999999999999999999 6778999999999999999977 55666666
Q ss_pred HHHHHh
Q 000139 1210 DDLVIQ 1215 (2062)
Q Consensus 1210 ~~~vIq 1215 (2062)
...++.
T Consensus 765 ~~~~i~ 770 (936)
T 4a2w_A 765 MNKAVE 770 (936)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 11
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=2.3e-34 Score=341.33 Aligned_cols=132 Identities=18% Similarity=0.181 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.|||++.|.+||..+++.||||||||||++|||+||.+|...|+.|+|+||++... +++. .+..++|||+ |++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-tsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-SSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ESS
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceEEEE-ECC
Confidence 48999999999999999999999999999999999999999999999999996643 3221 1457889877 568
Q ss_pred cccccC-----cccCCEEEEecCCCChhhH-HHHHHhhhcc--CCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1144 GGVGIN-----LVGADTVIFYDSDWNPAMD-QQAQDRCHRI--GQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1144 GG~GLN-----LT~ADtVIfyD~dWNPa~d-~QA~gRahRI--GQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
||.|+| |++||+||+||++|||+++ .||+.|+||+ ||+|+|.|||||+.+|||+.++..
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 888886 8999999999999999999 9999999999 789999999999999999999987
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=356.02 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=103.8
Q ss_pred ccchHHHHHHHHHHhhh--CCCeEEEEeCchHHHHHHHHHHHHc------------CCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1064 DCGKLQELAILLRKLKS--DGHRALIFTQMTKMLDILEEFISLY------------GYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks--~GhKVLIFSQ~t~mLDILe~~L~~~------------Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
.++|+..|..+|..+.. .++|+|||+++..+++.|..+|... |..+..++|+++..+|+.++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 36899999999988754 4599999999999999999999876 456666777999999999999999
Q ss_pred cCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000139 1130 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 1209 (2062)
Q Consensus 1130 ~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L 1209 (2062)
.++.+.| |++|+++|+||||+++++||+||++|||....|++|| ||.+++++|.|++.++++++. .....|..+
T Consensus 449 ~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~-~~~~~~e~~ 522 (555)
T 3tbk_A 449 ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE-KANMIKEKI 522 (555)
T ss_dssp ---CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH-HHHHHHHHH
T ss_pred cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH-HHhhHHHHH
Confidence 8677777 5799999999999999999999999999999999999 778999999999999999884 444556666
Q ss_pred HHHHHh
Q 000139 1210 DDLVIQ 1215 (2062)
Q Consensus 1210 ~~~vIq 1215 (2062)
...++.
T Consensus 523 ~~~~~~ 528 (555)
T 3tbk_A 523 MNESIL 528 (555)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=7.2e-31 Score=344.50 Aligned_cols=130 Identities=19% Similarity=0.290 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcC----CcEEEecC--------CCCHHHHHHHHHHHhc
Q 000139 1065 CGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYG----YTYMRLDG--------STQPEERQTLMQRFNT 1130 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~G----i~y~RLDG--------sTs~eqRq~lmerFN~ 1130 (2062)
++|+..|..+|.... ..++++|||+++..+++.|..+|...| +.+..++| +++..+|+.++++|+.
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 579999999998774 357899999999999999999999998 89999955 9999999999999987
Q ss_pred CCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHH
Q 000139 1131 NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENI 1199 (2062)
Q Consensus 1131 D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~I 1199 (2062)
++.+.| |++|.++|.|||++++++||+||++||+....|++|| +| .++..+|.|++.+++++..
T Consensus 459 ~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR---~~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 459 SGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR---ARGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp --CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred cCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc---CCCceEEEEecCCCHHHHH
Confidence 566766 6899999999999999999999999999999999999 77 4778999999999987754
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=4.4e-30 Score=325.36 Aligned_cols=347 Identities=15% Similarity=0.158 Sum_probs=247.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHH--CCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKW--CPA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw--~P~ 599 (2062)
..|+|||..++.+++. +.++||+++||+|||++++.++...... ..+++|||||+ .|+.||..+|.+| .+.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4799999999999876 3679999999999999998777665542 23589999998 6889999999999 566
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceEE
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRI 678 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~RL 678 (2062)
.++..++|....... .....+|+|+||+.+...... .-..|++|||||||++.+. .....+..+ .+.++|
T Consensus 186 ~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (510)
T ss_dssp GGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEE
T ss_pred cceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEE
Confidence 788888776443221 124678999999998876432 2246899999999999873 233445666 677999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhcCCC
Q 000139 679 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 758 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~ 758 (2062)
+||||| .+...++|++..++.|.++.. +....+. ...+++
T Consensus 257 ~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-----------------------------~~~l~~ 296 (510)
T 2oca_A 257 GLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTSKLME-----------------------------DGQVTE 296 (510)
T ss_dssp EEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC--------------------------------------C
T ss_pred EEEeCC-CCCcccHHHhHHhhCCeEEee----------CHHHHhh-----------------------------CCcCCC
Confidence 999999 666677888888776643211 1100000 012444
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccccc
Q 000139 759 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCS 838 (2062)
Q Consensus 759 K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~~~ 838 (2062)
.....+.+.++...... +.+..+... +..+
T Consensus 297 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~------~~~~------------------------------- 326 (510)
T 2oca_A 297 LKINSIFLRYPDEFTTK-------------LKGKTYQEE------IKII------------------------------- 326 (510)
T ss_dssp CEEEEEEEECCHHHHHH-------------HTTCCHHHH------HHHH-------------------------------
T ss_pred ceEEEEeecCChHHhcc-------------ccccchHHH------HHHH-------------------------------
Confidence 44455555555432100 000000000 0000
Q ss_pred cCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCCchHHHHHHHHHH
Q 000139 839 MLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALL 918 (2062)
Q Consensus 839 ~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~gt~~~e~l~~~l~ 918 (2062)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhh
Q 000139 919 EERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVE 998 (2062)
Q Consensus 919 eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie 998 (2062)
T Consensus 327 -------------------------------------------------------------------------------- 326 (510)
T 2oca_A 327 -------------------------------------------------------------------------------- 326 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHh
Q 000139 999 SFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKL 1078 (2062)
Q Consensus 999 ~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkL 1078 (2062)
.....|...+..++.++
T Consensus 327 ---------------------------------------------------------------~~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 327 ---------------------------------------------------------------TGLSKRNKWIAKLAIKL 343 (510)
T ss_dssp ---------------------------------------------------------------HTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------hccHHHHHHHHHHHHHH
Confidence 00012333444555544
Q ss_pred hh-CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec-cccccccCcccCCEE
Q 000139 1079 KS-DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST-RSGGVGINLVGADTV 1156 (2062)
Q Consensus 1079 ks-~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST-rAGG~GLNLT~ADtV 1156 (2062)
.. .+.++|||+. +..++.|...|...|..+.+++|.++..+|+.++++|++ +.+.| |++| .+++.|||++.+++|
T Consensus 344 ~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~v-Lv~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 344 AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGII-IVASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCE-EEEEHHHHHHSCCCCSEEEE
T ss_pred HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCE-EEEEcChhhcccccccCcEE
Confidence 33 4567778887 888888999999999999999999999999999999995 56666 4556 999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhccCCcC-cEEEEEEEeCCCHHHHHH
Q 000139 1157 IFYDSDWNPAMDQQAQDRCHRIGQTR-EVHIYRLISESTIEENIL 1200 (2062)
Q Consensus 1157 IfyD~dWNPa~d~QA~gRahRIGQTR-dV~VYRLIse~TIEE~Il 1200 (2062)
|++|++||+....|++||++|.|+.+ .|.||.++...++.++++
T Consensus 421 i~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 421 VLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp EESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred EEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 99999999999999999999999997 799999999877655443
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=333.36 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHhhh--C-CCeEEEEeCchHHHHHHHHHHHHc------CCcEEEecCC--------CCHHHHHHHHHH
Q 000139 1065 CGKLQELAILLRKLKS--D-GHRALIFTQMTKMLDILEEFISLY------GYTYMRLDGS--------TQPEERQTLMQR 1127 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks--~-GhKVLIFSQ~t~mLDILe~~L~~~------Gi~y~RLDGs--------Ts~eqRq~lmer 1127 (2062)
+.|+..|..+|..... . +.++|||+++..+++.|..+|..+ |+.+..++|. ++..+|+.++++
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 4566677777776433 2 789999999999999999999987 9999999999 999999999999
Q ss_pred HhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000139 1128 FNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKR 1207 (2062)
Q Consensus 1128 FN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr 1207 (2062)
|+. +.+.| |++|.++|+|||++.+++||+||++|||....|++||++|-| ..++.+...++.+.........+.
T Consensus 460 F~~-g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~ 533 (699)
T 4gl2_A 460 FRT-GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFRE 533 (699)
T ss_dssp HCC----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHH
T ss_pred Hhc-CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHH
Confidence 986 55665 689999999999999999999999999999999999986655 555566777776666555555666
Q ss_pred HHHHHHHh
Q 000139 1208 ALDDLVIQ 1215 (2062)
Q Consensus 1208 ~L~~~vIq 1215 (2062)
.+....+.
T Consensus 534 ~~~~~~~~ 541 (699)
T 4gl2_A 534 KMMYKAIH 541 (699)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=1.8e-27 Score=307.46 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=103.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhc------CCCCcEEEEecC-CcHHHHH-H
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKR-LNGILADEMGLGKTIMTIAMLAHLACEK------GIWGPHLIVVPT-SVMLNWE-T 591 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~-~gGILADEMGLGKTIQaIALLa~L~~~~------g~~Gp~LIVvPt-SLL~QW~-~ 591 (2062)
....||+||..++.|++..+.++ .++||++.||+|||++++.++..+.... ...+++|||||+ .|+.||. .
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34689999999999998877655 5589999999999999999888776532 145789999995 7889999 8
Q ss_pred HHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch------hhhhccCeeEEEEcCccccCChhhHH
Q 000139 592 EFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS------KVFKRKKWKYLILDEAHLIKNWKSQR 665 (2062)
Q Consensus 592 Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~------~~L~r~~W~lVILDEAH~IKN~~Sk~ 665 (2062)
+|+.|.+.. ..+.+. ......+|+|+||+.+.... ..|....|++|||||||++.+.....
T Consensus 255 ~~~~~~~~~--~~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~ 321 (590)
T 3h1t_A 255 TFTPFGDAR--HKIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN 321 (590)
T ss_dssp CCTTTCSSE--EECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHhcchhh--hhhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHH
Confidence 888886532 222221 12246789999999997752 23444579999999999998754333
Q ss_pred -HHHHHcccCceEEEEeccCCCCChHHHHHH
Q 000139 666 -WQTLLNFNSKRRILLTGTPLQNDLMELWSL 695 (2062)
Q Consensus 666 -~qaL~~L~a~~RLLLTGTPLQNsL~ELwSL 695 (2062)
...+..+...++++|||||..+...+++.+
T Consensus 322 ~~~il~~~~~~~~l~lTATP~~~~~~~~~~~ 352 (590)
T 3h1t_A 322 WREILEYFEPAFQIGMTATPLREDNRDTYRY 352 (590)
T ss_dssp CHHHHHHSTTSEEEEEESSCSCTTTHHHHHH
T ss_pred HHHHHHhCCcceEEEeccccccccchhHHHH
Confidence 344556677899999999999877665443
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=3.6e-26 Score=277.76 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=109.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|...|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|..+++.|++ +.+.| |++|.+++
T Consensus 236 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~ 311 (391)
T 1xti_A 236 EKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNLFG 311 (391)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEESCCCS
T ss_pred hHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc-CCCcE-EEECChhh
Confidence 3566667777654 67899999999999999999999999999999999999999999999986 45555 78999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
.|||+.++++||+||++||+....|++||++|.|+...+. .|++... +..+++.
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~~-~~~~~~~ 365 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDEN-DAKILND 365 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSHH-HHHHHHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEcccc-hHHHHHH
Confidence 9999999999999999999999999999999999766554 4555432 3444444
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=8e-25 Score=267.43 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|++ +.+.| |++|.+++
T Consensus 244 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-Lv~T~~~~ 319 (400)
T 1s2m_A 244 QKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRT-LVCSDLLT 319 (400)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEESSCSS
T ss_pred hHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEcCccc
Confidence 4666677777654 56799999999999999999999999999999999999999999999985 45655 68899999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
.|||+..+++||+||++||+....|++||++|.||. -.+|.|++.+.
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~l~~~~~ 366 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL--GLAINLINWND 366 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCC--EEEEEEECGGG
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCC--ceEEEEeccch
Confidence 999999999999999999999999999999999975 45666777763
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=4.4e-25 Score=264.86 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+|. ..+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++.
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~ 300 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRI-LIATDVMSR 300 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSE-EEECTTHHH
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChhhc
Confidence 4445555443 567899999999999999999999999999999999999999999999986 45655 678999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
|+|+..+++||+||++||+....|++||++|.|+...+ |.|+++...
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 99999999999999999999999999999999987655 556666543
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.93 E-value=1.5e-24 Score=266.25 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~ 338 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRV-LISTDVWAR 338 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECGGGSS
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEECChhhC
Confidence 566677777654 34599999999999999999999999999999999999999999999986 45555 689999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
|||+..+++||+||++|++....|++||++|.|+.. .+|.|++...
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 999999999999999999999999999999999754 5566777654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1e-24 Score=259.06 Aligned_cols=118 Identities=16% Similarity=0.275 Sum_probs=101.5
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEe
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1159 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfy 1159 (2062)
..+.++|||++....++.|...|. .+..++|.++..+|..++++|++ +.+.| |++|.+++.|||+..+++||+|
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE-GEYDM-LITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECHHHHTTCCCCCBSEEEES
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc-CCCcE-EEEcCccccCCCccCCCEEEEe
Confidence 356799999999999999988887 67889999999999999999986 45655 7889999999999999999999
Q ss_pred cCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1160 DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1160 D~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
|++|++....|++||++|.||...+.+|.. .+.++.++|.+..+
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999888888777 66667777765543
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=269.26 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 341 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS-GSSRV-LITTDLLA 341 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC-C---C-EEECSSCC
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEECCccc
Confidence 3666777777654 45699999999999999999999999999999999999999999999976 45555 78999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
.|||+.++++||+||++||+....|++||++|.|+.. .+|.|++++
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999999999999999999764 566678776
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=1.9e-23 Score=253.20 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..++... .+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 230 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~~ 305 (395)
T 3pey_A 230 KFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GRSKV-LITTNVLAR 305 (395)
T ss_dssp HHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCCE-EEECGGGSS
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCE-EEECChhhc
Confidence 445555555433 46799999999999999999999999999999999999999999999986 45655 789999999
Q ss_pred ccCcccCCEEEEecCCC------ChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1147 GINLVGADTVIFYDSDW------NPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dW------NPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
|||+.++++||+||++| ++....|++||++|.|+... +|.|+..
T Consensus 306 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~ 355 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHD 355 (395)
T ss_dssp SCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS
T ss_pred CCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEec
Confidence 99999999999999999 99999999999999997544 4445554
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=6.2e-25 Score=266.89 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++.|||+.++++||+||
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCcE-EEECChhhcCCCcccCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999985 45554 78999999999999999999999
Q ss_pred CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1161 SDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1161 ~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
++|++....|++||++|.|+...+ |.|++.+
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ---------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999976544 4456655
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=2.8e-22 Score=245.06 Aligned_cols=130 Identities=23% Similarity=0.288 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..++... .+.++|||++.....+.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+++
T Consensus 252 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECGGGT
T ss_pred HHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC-CCCcE-EEEcCccc
Confidence 3566666666654 46799999999999999999999999999999999999999999999986 45555 78999999
Q ss_pred cccCcccCCEEEEecCCCCh------hhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1146 VGINLVGADTVIFYDSDWNP------AMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNP------a~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
.|||+.++++||+||++||+ ....|++||++|.|+.. .+|.|+... -+..+++.
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~~~ 387 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK-HSMNILNR 387 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHHHH
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh-hhHHHHHH
Confidence 99999999999999999987 68999999999999654 455566542 23444444
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.7e-22 Score=246.14 Aligned_cols=122 Identities=21% Similarity=0.311 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|...|..+|... ..+.++|||++.....+.|..+|...|+.+..++|.++.++|..++++|+. +.+.| |++|.+++.
T Consensus 262 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lvaT~~~~~ 338 (417)
T 2i4i_A 262 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVATAVAAR 338 (417)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECHHHHT
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhc
Confidence 555666666553 357799999999999999999999999999999999999999999999986 45555 788999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
|||+..+++||+||++|++....|++||++|.|+. -.+|.|+.+.
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 99999999999999999999999999999999975 5556677654
No 27
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=3.4e-22 Score=249.33 Aligned_cols=120 Identities=17% Similarity=0.297 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|...|..+|... +.++|||++.....+.|..+|...|+.+..++|.++..+|..++++|+. +.+.| |++|.+++
T Consensus 287 ~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~v~~ 361 (434)
T 2db3_A 287 AKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN-GSMKV-LIATSVAS 361 (434)
T ss_dssp GHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT-SSCSE-EEECGGGT
T ss_pred HHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEchhhh
Confidence 3566666666553 4469999999999999999999999999999999999999999999986 45665 78999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
.|||+.++++||+||++|++....|++||++|.|++-. +|.|++.
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEE--EEEEECT
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCE--EEEEEec
Confidence 99999999999999999999999999999999998654 4556664
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.89 E-value=6.8e-22 Score=243.87 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEE-EecCCCCHHHHHHHHHHHhcCCCceEEEEe---c
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYM-RLDGSTQPEERQTLMQRFNTNPKIFLFILS---T 1141 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~-RLDGsTs~eqRq~lmerFN~D~~IfVfLLS---T 1141 (2062)
.|...|..+|.. .+.++|||++.....+.|...|...|+.+. .++|. +|+ +++|++ +.+.|++.| |
T Consensus 239 ~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~-g~~~vLvat~s~T 308 (414)
T 3oiy_A 239 RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV-GKINILIGVQAYY 308 (414)
T ss_dssp CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT-TSCSEEEEECCTT
T ss_pred CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC-CCCeEEEEecCcC
Confidence 355666677766 358999999999999999999999999998 88884 455 999986 678886654 9
Q ss_pred cccccccCccc-CCEEEEecCC--CChhhHHHHHHhhhccCCc--CcEEEEEEE
Q 000139 1142 RSGGVGINLVG-ADTVIFYDSD--WNPAMDQQAQDRCHRIGQT--REVHIYRLI 1190 (2062)
Q Consensus 1142 rAGG~GLNLT~-ADtVIfyD~d--WNPa~d~QA~gRahRIGQT--RdV~VYRLI 1190 (2062)
.+++.|||+.+ +++||+||++ +++....|++||++|.|+. +.-.+|.|+
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 9999999999 9999999999999999986 677777777
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=3.7e-21 Score=245.72 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|+..|..+|... .+.++|||+......+.+...|...|+.+..++|+++.++|..+++.|.. +++.| |++|.+.|.
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~v-lVaT~a~~~ 298 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQI-VVATVAFGM 298 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECTTSCT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhC
Confidence 344455555543 57899999999999999999999999999999999999999999999986 45666 688999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEE
Q 000139 1147 GINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1186 (2062)
|||+..++.||+||+++++....|++||++|.|+...+.+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999998765544
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=8.5e-21 Score=261.16 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=97.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHc--CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLY--GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~--Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
.|.+||||++....++.+...|... ++.+..++|.++..+|+.++++|.+ +++.| |++|.+++.|||+..+++||+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~V-LVaT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCE-EEESSTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEECCcceeeecccCCcEEEE
Confidence 5789999999999999999999887 8999999999999999999999985 56666 688899999999999999999
Q ss_pred ecC-CCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1159 YDS-DWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1159 yD~-dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+++ .|++....|++||++|.|+. -++|.|+..+
T Consensus 889 ~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred eCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 999 59999999999999999964 5556666654
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=5.1e-20 Score=237.67 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=101.4
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLY---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV 1156 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~---Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtV 1156 (2062)
..+.++|||+......+.|...|... |+.+..++|.++..+|..++++|.. +.+.| |++|.+++.|||+.++++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~v-LVaT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeE-EEEcchhhcCCCcccCCEE
Confidence 45789999999999999999999877 9999999999999999999999987 45665 6889999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1157 IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1157 IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
|+||+++++....|++||++|.|+.. .++.|++.. |..+++.
T Consensus 364 I~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~ 405 (579)
T 3sqw_A 364 LQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRE 405 (579)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHH
T ss_pred EEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc--HHHHHHH
Confidence 99999999999999999999999754 445566654 4444443
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.85 E-value=2.7e-20 Score=240.81 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=96.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.+.++|||+......+.|...|...|+.+..++|+++..+|..++++|.. +.+.| |++|.+.|.|||+...+.||+||
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~V-lVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA-NEIQV-VVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhcCCCcccccEEEEeC
Confidence 57899999999999999999999999999999999999999999999986 45665 68899999999999999999999
Q ss_pred CCCChhhHHHHHHhhhccCCcCcEEEE
Q 000139 1161 SDWNPAMDQQAQDRCHRIGQTREVHIY 1187 (2062)
Q Consensus 1161 ~dWNPa~d~QA~gRahRIGQTRdV~VY 1187 (2062)
+++++....|++||++|.|+...+.++
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999986655544
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.84 E-value=1.6e-19 Score=231.64 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=101.5
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLY---GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV 1156 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~---Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtV 1156 (2062)
..+.++|||+......+.|...|... |+.+..++|.++..+|..+++.|.. +.+.| |++|.+++.|||+.++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCE-EEEcchhhcCCCcccCCEE
Confidence 45789999999999999999999877 9999999999999999999999986 55665 7889999999999999999
Q ss_pred EEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1157 IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1157 IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
|+||+++++....|++||++|.|+. -.++.|++.. |...++.
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~--e~~~~~~ 456 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKE--GSSVLFICKD--ELPFVRE 456 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG--GHHHHHH
T ss_pred EEECCCCchhhhhhhcCccccCCCC--ceEEEEEchh--HHHHHHH
Confidence 9999999999999999999999965 4455566664 3344443
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=1.9e-21 Score=247.42 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGV 1146 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~ 1146 (2062)
|...|..++... .+.++|||++.......|...|...|+.+..++|+++..+|+.++++|+. +.+.| |++|.+++.
T Consensus 344 k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~V-LVaT~~l~~ 419 (508)
T 3fho_A 344 KYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKV-LVTTNVIAR 419 (508)
T ss_dssp HHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS-SSCCC-CEECC----
T ss_pred HHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeE-EEeCChhhc
Confidence 444444444433 45799999999999999999999999999999999999999999999985 45555 788999999
Q ss_pred ccCcccCCEEEEecCC------CChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1147 GINLVGADTVIFYDSD------WNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1147 GLNLT~ADtVIfyD~d------WNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
|||+..+++||+||++ +++....|++||++|.|+...+.+ |+..
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVHD 469 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEE--EECT
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEeC
Confidence 9999999999999999 789999999999999997655544 4553
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.82 E-value=9.9e-21 Score=238.18 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~ 1161 (2062)
+.++|||++.....+.|...|...|+.+..++|.++..+|..++++|.. +.+.| |++|.+++.|||+..+++||+||+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~i-Lv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEEccccccCCccccCCEEEEecC
Confidence 4579999999999999999999999999999999999999999999986 45665 788999999999999999999999
Q ss_pred CCCh------hhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1162 DWNP------AMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1162 dWNP------a~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
+|++ ....|++||++|.|+.-.+ |.|+..
T Consensus 411 p~~~~~~~s~~~~~Qr~GRagR~g~~G~~--i~~~~~ 445 (479)
T 3fmp_B 411 PVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS 445 (479)
T ss_dssp -------------------------------------
T ss_pred CCCCccCCCHHHHHHHhcccccCCCCceE--EEEEcC
Confidence 9977 5889999999999965444 445544
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.4e-19 Score=238.96 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=105.3
Q ss_pred HHHHHHHHhhh-CCCeEEEEeCchHHHHHHHHHHHHcCCc---------------------------------------E
Q 000139 1070 ELAILLRKLKS-DGHRALIFTQMTKMLDILEEFISLYGYT---------------------------------------Y 1109 (2062)
Q Consensus 1070 ~L~~LLrkLks-~GhKVLIFSQ~t~mLDILe~~L~~~Gi~---------------------------------------y 1109 (2062)
.+..++..+.. .+.++|||+......+.+...|...|+. +
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 34445555444 4469999999999999998888765543 6
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE----ecC----CCChhhHHHHHHhhhccCCc
Q 000139 1110 MRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF----YDS----DWNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1110 ~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf----yD~----dWNPa~d~QA~gRahRIGQT 1181 (2062)
..++|+++..+|+.+++.|.. +.+.| |++|.+++.|||+.+++.||. ||. +|+|....|++||++|.|+.
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~-G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHT-TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred eEECCCCCHHHHHHHHHHHhc-CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 779999999999999999986 67777 688899999999999999999 999 99999999999999999999
Q ss_pred CcEEEEEEEeCCC
Q 000139 1182 REVHIYRLISEST 1194 (2062)
Q Consensus 1182 RdV~VYRLIse~T 1194 (2062)
...++|.|+.++.
T Consensus 488 ~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 488 DRGIVIMMIDEKM 500 (1010)
T ss_dssp SSEEEEEEECSCC
T ss_pred CceEEEEEECCCC
Confidence 9999999998763
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.80 E-value=6.5e-20 Score=242.70 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC-
Q 000139 523 FPLREYQHIGLDWLVTMYEKR--LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP- 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~--~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P- 598 (2062)
+.|+++|..++..+......+ .+.||..++|.|||++++..+...... | +.+|||||+ .|..||...|.+|++
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-g--~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-G--FQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-T--SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-C--CeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 479999999999988765443 488999999999999987766655432 2 479999999 578899999999986
Q ss_pred -CCeEEEEeCChhhHHhhh-hccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCc
Q 000139 599 -AFKILTYFGSAKERKFKR-QGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSK 675 (2062)
Q Consensus 599 -~lkVl~y~Gs~kerk~~r-~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~ 675 (2062)
++++..++|......... ......+.++|+|+|+..+... +.-.++++||+||+|++.... ...+... ...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~ 517 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMV 517 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCC
Confidence 588888888754332111 0111234689999999887543 233568999999999983211 1112222 356
Q ss_pred eEEEEeccCCCC
Q 000139 676 RRILLTGTPLQN 687 (2062)
Q Consensus 676 ~RLLLTGTPLQN 687 (2062)
+.++|||||+.+
T Consensus 518 ~vL~mSATp~p~ 529 (780)
T 1gm5_A 518 DTLVMSATPIPR 529 (780)
T ss_dssp CEEEEESSCCCH
T ss_pred CEEEEeCCCCHH
Confidence 899999999753
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.1e-18 Score=233.57 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=110.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 599 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~ 599 (2062)
..++|++||..++..+. .+.+.|++.++|.|||++++..+...... .+.+||++|+ .|..||..+|.+++.
T Consensus 181 ~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC-
Confidence 34679999999998763 47889999999999999887666655432 3579999998 588899999999987
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCChh-hHHHH-HHHcc-cC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNWK-SQRWQ-TLLNF-NS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~~-Sk~~q-aL~~L-~a 674 (2062)
.+.+++|.... ....+|+|+|++.+...... ..-.++.+|||||||++.... ...+. .+..+ ..
T Consensus 253 -~VglltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 253 -DVGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 321 (1108)
T ss_dssp -SEEEECSSCBC----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred -CccEEeCcccc----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence 56667775431 24578999999988664221 112357999999999997643 22233 33344 34
Q ss_pred ceEEEEeccCCCCChHHHHHHH
Q 000139 675 KRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
.+.++|||| +.|. .++..++
T Consensus 322 ~qvl~lSAT-ipn~-~e~a~~l 341 (1108)
T 3l9o_A 322 VRYVFLSAT-IPNA-MEFAEWI 341 (1108)
T ss_dssp SEEEEEECS-CSSC-HHHHHHH
T ss_pred ceEEEEcCC-CCCH-HHHHHHH
Confidence 578999999 4443 3443333
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.1e-17 Score=221.01 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=96.9
Q ss_pred hhhCCCeEEEEeCchHHHHHHHHHHHHcC------------------------------------CcEEEecCCCCHHHH
Q 000139 1078 LKSDGHRALIFTQMTKMLDILEEFISLYG------------------------------------YTYMRLDGSTQPEER 1121 (2062)
Q Consensus 1078 Lks~GhKVLIFSQ~t~mLDILe~~L~~~G------------------------------------i~y~RLDGsTs~eqR 1121 (2062)
+...+.+||||+......+.+...|.... +.+..++|+++.++|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 33568899999999999998888887542 347889999999999
Q ss_pred HHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE----ec-------CCCChhhHHHHHHhhhccCCcCcEEEEEEE
Q 000139 1122 QTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF----YD-------SDWNPAMDQQAQDRCHRIGQTREVHIYRLI 1190 (2062)
Q Consensus 1122 q~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf----yD-------~dWNPa~d~QA~gRahRIGQTRdV~VYRLI 1190 (2062)
..+.+.|.. +.+.| |++|.+++.|||+.+.+.||. || .+++++...|+.|||+|.|+..+-++|+|+
T Consensus 328 ~~v~~~f~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 405 (715)
T 2va8_A 328 DLIEEGFRQ-RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVV 405 (715)
T ss_dssp HHHHHHHHT-TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEEC
T ss_pred HHHHHHHHc-CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 999999985 56776 788999999999999999998 99 799999999999999999999999999999
Q ss_pred eCCC
Q 000139 1191 SEST 1194 (2062)
Q Consensus 1191 se~T 1194 (2062)
+...
T Consensus 406 ~~~~ 409 (715)
T 2va8_A 406 RDKE 409 (715)
T ss_dssp SCGG
T ss_pred CCch
Confidence 8765
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.77 E-value=3.5e-18 Score=225.33 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=100.5
Q ss_pred hhCCCeEEEEeCchHHHHHHHHHHHHc------------------------------CCcEEEecCCCCHHHHHHHHHHH
Q 000139 1079 KSDGHRALIFTQMTKMLDILEEFISLY------------------------------GYTYMRLDGSTQPEERQTLMQRF 1128 (2062)
Q Consensus 1079 ks~GhKVLIFSQ~t~mLDILe~~L~~~------------------------------Gi~y~RLDGsTs~eqRq~lmerF 1128 (2062)
...+.++|||+........+...|... ++.+..++|+++.++|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346889999999999988888777542 23456699999999999999999
Q ss_pred hcCCCceEEEEeccccccccCcccCCEEEE----ec---CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1129 NTNPKIFLFILSTRSGGVGINLVGADTVIF----YD---SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1129 N~D~~IfVfLLSTrAGG~GLNLT~ADtVIf----yD---~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
.. +.+.| |++|.+++.|||+.+.+.||. || .++++....|+.||++|.|+.++-++|+|++...++
T Consensus 319 ~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 319 RR-GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HT-TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HC-CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 86 56776 689999999999999999998 77 789999999999999999999999999999987744
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.77 E-value=1e-17 Score=221.66 Aligned_cols=115 Identities=17% Similarity=0.072 Sum_probs=100.8
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc---------------------------------CCcEEEecCCCCHHHHHHHHH
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLY---------------------------------GYTYMRLDGSTQPEERQTLMQ 1126 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~---------------------------------Gi~y~RLDGsTs~eqRq~lme 1126 (2062)
..++++|||+......+.+...|... .+.+..++|+++.++|..+.+
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 46789999999999988888887643 124788999999999999999
Q ss_pred HHhcCCCceEEEEeccccccccCcccCCEEEE----ec----CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1127 RFNTNPKIFLFILSTRSGGVGINLVGADTVIF----YD----SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1127 rFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf----yD----~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
.|.. +.+.| |++|.+.+.|||+.+.+.||. || .++++....|++||++|.|+.+.-.+|+|++...++
T Consensus 315 ~f~~-g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 315 NFRK-GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHT-TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHC-CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9985 56776 688999999999999999998 88 689999999999999999999999999999988754
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.73 E-value=9.1e-17 Score=218.49 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=112.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~l 600 (2062)
.+.|++||..++..+.. +.+.|++..+|.|||++++..+..+.. . .+.+|||+|+ .++.||..+|.+++++.
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~-~--g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR-N--MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH-T--TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 35689999999987654 678999999999999876555554433 2 2469999998 68899999999999889
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a~ 675 (2062)
++..++|.... ....+|+|+|++.+..... .+.-..+.+|||||||++.+. .......+..+. ..
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 99999986532 1346899999998865432 122346899999999999764 233334444454 46
Q ss_pred eEEEEeccCCCCChHHHHHHHH
Q 000139 676 RRILLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~ELwSLL~ 697 (2062)
+.++|||||- +..++-..+.
T Consensus 180 ~iIlLSAT~~--n~~ef~~~l~ 199 (997)
T 4a4z_A 180 KFILLSATVP--NTYEFANWIG 199 (997)
T ss_dssp EEEEEECCCT--THHHHHHHHH
T ss_pred CEEEEcCCCC--ChHHHHHHHh
Confidence 7899999974 2335544444
No 43
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=1.1e-17 Score=196.81 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=125.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~ 599 (2062)
.+|++||..++.+++. +.++||+++||+|||+++++++..+... + .+++|||||+ .++.||..+|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN-Y-EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH-C-SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5799999999998876 3568999999999999998877765442 2 3589999998 688999999999964 3
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceEE
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRRI 678 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~RL 678 (2062)
..+..++|...... ......+|+|+||+.+.+....+ ...|++||+||||++.+. .....+..+ +..++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 46666555442211 11246789999999998764432 246899999999999864 444555666 678999
Q ss_pred EEeccCCCCChHHHHHHHHHhCC
Q 000139 679 LLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
+|||||. |...+++.++.++.|
T Consensus 257 ~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCC-TTSTTHHHHHHHHCE
T ss_pred EEeCCCC-CcchHHHHHHHhcCC
Confidence 9999996 556889999998876
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.72 E-value=4.7e-16 Score=213.30 Aligned_cols=130 Identities=16% Similarity=0.294 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC-CCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC-PAF 600 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~-P~l 600 (2062)
+.|+|+|..++..++. +.+.|+...+|.|||+..+..+.... ...+.+|||+|+ .|+.|+...|.+++ .++
T Consensus 77 f~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 3689999999987765 67899999999999996655555443 233579999999 58889999999976 457
Q ss_pred eEEEEeCChhhH--HhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCC
Q 000139 601 KILTYFGSAKER--KFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 601 kVl~y~Gs~ker--k~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN 660 (2062)
++..++|..... ..... ....+.++|+|+|+..+......+...++++|||||||++..
T Consensus 150 ~v~~l~Gg~~~~er~~~~~-~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEK-SFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHH-HHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHH-HHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccc
Confidence 999999876431 11111 112245899999999997776666667899999999998653
No 45
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.71 E-value=7.6e-16 Score=208.91 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHH
Q 000139 523 FPLREYQHIGLDWLVTMYEK----------RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWET 591 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~----------~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~ 591 (2062)
..|||||..++.+++..... +.+||+.+.+|+|||++++.++ .+....+...++|||||. .|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 45899999999999875432 3689999999999999986665 444433444689999995 78999999
Q ss_pred HHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh---h-hccCeeEEEEcCccccCChhhHHHH
Q 000139 592 EFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---F-KRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 592 Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~---L-~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
+|.+|.+.. ++.+... ...... ......+|+|+||+.+...... + .-..+.+||+||||+.... ..++
T Consensus 349 ~f~~f~~~~---v~~~~s~-~~l~~~--L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSENT-AGLKRN--LDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQK 420 (1038)
T ss_dssp HHHTTSTTC---SSSSCCC-HHHHHH--HHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHH
T ss_pred HHHHhcccc---cccccCH-HHHHHH--hcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHH
Confidence 999998752 1112111 111110 1123578999999999764321 1 1236899999999997532 2344
Q ss_pred HH-HcccCceEEEEeccCCCC
Q 000139 668 TL-LNFNSKRRILLTGTPLQN 687 (2062)
Q Consensus 668 aL-~~L~a~~RLLLTGTPLQN 687 (2062)
.+ ..++..++++|||||...
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHhCCcccEEEEeCCcccc
Confidence 44 456778999999999864
No 46
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.65 E-value=5.3e-16 Score=178.85 Aligned_cols=142 Identities=25% Similarity=0.319 Sum_probs=111.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 599 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~ 599 (2062)
....|++||..++.+++. +.++||+.+||+|||+++++++..+ .+++|||||+ .++.||..+|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 457899999999997654 4569999999999999998887653 3689999999 7889999999995 5
Q ss_pred Ce-EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEE
Q 000139 600 FK-ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 600 lk-Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RL 678 (2062)
.+ +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+... .+.+..++..++|
T Consensus 158 ~~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l 222 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRL 222 (237)
T ss_dssp GGGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEE
T ss_pred CCeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHH--HHHHHhccCCEEE
Confidence 66 888877653 245799999999987766543 4699999999999987542 3445666889999
Q ss_pred EEeccCCCCCh
Q 000139 679 LLTGTPLQNDL 689 (2062)
Q Consensus 679 LLTGTPLQNsL 689 (2062)
+|||||.+++-
T Consensus 223 ~LSATp~r~D~ 233 (237)
T 2fz4_A 223 GLTATFEREDG 233 (237)
T ss_dssp EEEESCC----
T ss_pred EEecCCCCCCC
Confidence 99999998753
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.63 E-value=3.5e-15 Score=204.52 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC--C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA--F 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~--l 600 (2062)
.+ ++|..++.-++. +.+.|+..++|.|||+.++.++..+.. ..+.+|||+|+ .|+.|+...|.++++. +
T Consensus 57 ~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 57 PR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 37 999999987764 678999999999999855555444432 23579999999 5788899999998864 4
Q ss_pred ----eEEEEeCChhhHHh--hhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhh
Q 000139 601 ----KILTYFGSAKERKF--KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKS 663 (2062)
Q Consensus 601 ----kVl~y~Gs~kerk~--~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~S 663 (2062)
++..++|....... ..... ..++|+|+|+..+......|. .+++|||||||++-++..
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l---~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~ 192 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNL---RNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASK 192 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSG---GGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTH
T ss_pred CccceEEEEeCCCChhhHHHHHhhc---cCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccc
Confidence 77888886543221 11111 127899999999987655443 688999999999876443
No 48
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=3.4e-15 Score=163.82 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=110.8
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+..|..+|+.. .+.++|||++....++.|...|...|+.+..++|.++..+|..+++.|+. +.+.| |++|.+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-LvaT~~ 90 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNL 90 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEESSC
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcE-EEECCc
Confidence 457999999999875 56799999999999999999999999999999999999999999999985 56666 678899
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
++.|||++.+++||+||++||+....|++||++|.||+..+. .|++.
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~ 137 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSD 137 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECS
T ss_pred hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcC
Confidence 999999999999999999999999999999999999876544 45554
No 49
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.61 E-value=2.1e-15 Score=163.64 Aligned_cols=131 Identities=19% Similarity=0.302 Sum_probs=114.8
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+..|..+|... .+.++|||++.....+.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-lv~T~~ 94 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEYRY-LVATDV 94 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECGG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEECCh
Confidence 467999999999864 56799999999999999999999999999999999999999999999986 45666 678899
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
++.|||++.+++||+||++|||....|++||++|.||+..+ |.|++.. |..+++.
T Consensus 95 ~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~ 149 (163)
T 2hjv_A 95 AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLAD 149 (163)
T ss_dssp GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHH
T ss_pred hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHH
Confidence 99999999999999999999999999999999999987554 5566654 4445444
No 50
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=168.34 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.+.|+..|..+|.... .+.++|||++....++.|...|...|+.+..++|+++..+|+.++++|+. +.+.| |++|.+
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-LvaT~~ 105 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVATAV 105 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSSE-EEEEC-
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEcCh
Confidence 4679999999998753 57899999999999999999999999999999999999999999999986 55665 678899
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
++.|||++.+++||+||++||+....|++||++|.|++. .+|.|++..
T Consensus 106 ~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 106 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp -----CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 999999999999999999999999999999999999764 456667654
No 51
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.57 E-value=8.9e-15 Score=163.49 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=106.4
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+..|..+|.. .+.++|||++....++.|..+|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~~ 113 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE-GKKDV-LVATDV 113 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-TSCSE-EEECHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCEE-EEEcCc
Confidence 35688888887764 46699999999999999999999999999999999999999999999986 45665 678899
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
++.|||++.+++||+||++||+....|++||++|.||+..+ +.|++..
T Consensus 114 ~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 114 ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 99999999999999999999999999999999999997644 5567654
No 52
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.56 E-value=1.1e-14 Score=158.37 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..+|... .+.++|||++....++.|...|...|+.+..++|+++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 91 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDLLA 91 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEEEGGGT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCCEE-EEEcChhh
Confidence 3999999999875 56799999999999999999999999999999999999999999999985 56666 67889999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
.|+|++.+++||+||++||+....|++||++|.|+... +|.|++.+.+
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999999999999999999997664 4567777754
No 53
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=6e-14 Score=153.87 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.|+..|..+|..+ .+.++|||++....++.|...|...|+.+..++|.++..+|+.+++.|+. +.+.| |++|.+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKV-LITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSE-EEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEecchh
Confidence 4899999888765 46799999999999999999999999999999999999999999999986 56666 67899999
Q ss_pred cccCcccCCEEEEecCC------CChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1146 VGINLVGADTVIFYDSD------WNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~d------WNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
.|||++.+++||+||++ |++....|++||++|.|+. -.+|.|++.+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 99999999999999999 5668899999999999954 56778888765
No 54
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.52 E-value=4.8e-14 Score=156.99 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHh---cCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE---KGIWGPHLIVVPT-SVMLNWETEFLKWCPA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~---~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~ 599 (2062)
.|++||..++.++.. +.++|+...+|.|||++++..+...... .+..+.+|||||+ .++.||..++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 589999999998765 6789999999999999866555443321 1234579999999 7889999999999999
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC--hhhHHHHHHHccc-C
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-S 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L~-a 674 (2062)
+++..++|..........-. ..++|+|+|++.+..... .+.-..+++||+||||++.+ +.......+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALL---RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHH---HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHHHHhh---CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 99998888754332221111 257899999998865432 23345689999999999853 3344444445554 4
Q ss_pred ceEEEEeccCC
Q 000139 675 KRRILLTGTPL 685 (2062)
Q Consensus 675 ~~RLLLTGTPL 685 (2062)
.+.+++||||-
T Consensus 176 ~~~i~~SAT~~ 186 (207)
T 2gxq_A 176 RQTLLFSATLP 186 (207)
T ss_dssp SEEEEECSSCC
T ss_pred CeEEEEEEecC
Confidence 57899999984
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.51 E-value=1.2e-13 Score=172.60 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=85.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCE------
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADT------ 1155 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADt------ 1155 (2062)
+.++|||+......+.+...|...|+.+..++|. +|+.++++|.. +.+.| |++|.+.+.|||+. .++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~-g~~~v-LVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS-EKWDF-VITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH-SCCSE-EEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC-CCCeE-EEECchHHcCcccC-CcEEEecCc
Confidence 5589999999999999999999999999999997 68899999986 45666 78999999999998 555
Q ss_pred -----------EEEecCCCChhhHHHHHHhhhccCCc-CcEEEE
Q 000139 1156 -----------VIFYDSDWNPAMDQQAQDRCHRIGQT-REVHIY 1187 (2062)
Q Consensus 1156 -----------VIfyD~dWNPa~d~QA~gRahRIGQT-RdV~VY 1187 (2062)
||+||.+.++....|+.||++|.|.. ..+.+|
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 57789999999999999999999954 344444
No 56
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=158.69 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecC-CcHHH-HHHHHHHH
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPT-SVMLN-WETEFLKW 596 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~---g~~Gp~LIVvPt-SLL~Q-W~~Efkkw 596 (2062)
...|++||..++.+++. +.++|+...+|.|||++++.++..+.... +..+++|||||+ .++.| |..++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45799999999998764 57899999999999999988877654321 234689999999 56788 99999998
Q ss_pred CC-CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--------hhccCeeEEEEcCccccCChhh--HH
Q 000139 597 CP-AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--------FKRKKWKYLILDEAHLIKNWKS--QR 665 (2062)
Q Consensus 597 ~P-~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--------L~r~~W~lVILDEAH~IKN~~S--k~ 665 (2062)
.+ ++++..++|........... ...++|+|+||+.+...... +....|++|||||||++..... ..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEV---VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHH---HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred hccCceEEEEeCCcccchhHHhh---ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 76 47888888765432111100 02478999999998765432 2335789999999999964321 11
Q ss_pred H-HHHHcc--------------cCceEEEEecc
Q 000139 666 W-QTLLNF--------------NSKRRILLTGT 683 (2062)
Q Consensus 666 ~-qaL~~L--------------~a~~RLLLTGT 683 (2062)
. ..+... ...++++||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 1 111111 45689999998
No 57
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.51 E-value=1.3e-13 Score=156.35 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=111.6
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
....|+..|..++... .+.++|||++.....+.|...|...|+.+..++|+++..+|+.++++|+. +.+.| |++|.
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-lvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GEVRV-LVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SSCCE-EEECT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CCCeE-EEecC
Confidence 4578999999999854 57799999999999999999999999999999999999999999999986 46666 67899
Q ss_pred ccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1143 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1143 AGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+++.|||+.++++||+||++|++....|++||++|.|+. -.+|.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC--CeEEEEEchh
Confidence 999999999999999999999999999999999999976 4566777765
No 58
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.51 E-value=5.6e-14 Score=158.54 Aligned_cols=161 Identities=18% Similarity=0.220 Sum_probs=113.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~---P~ 599 (2062)
.|++||..++..+.. +.++|+...+|.|||+.++..+...........++|||||+ .++.||..++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 389999999998775 57799999999999988876666543322223479999998 68899999999987 47
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh---hhHHHHHHHccc-
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW---KSQRWQTLLNFN- 673 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~---~Sk~~qaL~~L~- 673 (2062)
+++..++|.......... ...+..+|+|+|++.+..... .+....+++||+||||++... .......+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~~~--~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEV--LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHHHH--HHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHHHH--HhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 889999886543322111 111346899999998875422 233356899999999998542 222333334443
Q ss_pred CceEEEEeccCCCCChHH
Q 000139 674 SKRRILLTGTPLQNDLME 691 (2062)
Q Consensus 674 a~~RLLLTGTPLQNsL~E 691 (2062)
..++++|||||-. .+.+
T Consensus 190 ~~~~i~~SAT~~~-~~~~ 206 (220)
T 1t6n_A 190 EKQVMMFSATLSK-EIRP 206 (220)
T ss_dssp SSEEEEEESCCCT-TTHH
T ss_pred cCeEEEEEeecCH-HHHH
Confidence 5688999999854 3444
No 59
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.22 E-value=2.8e-15 Score=163.82 Aligned_cols=123 Identities=17% Similarity=0.288 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+..|..+|.. ..+.++|||++....++.|...|...|+.+..++|.++..+|+.++++|+. +.+.| |++|.++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~v-LvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE-GRVNV-LVATDVA 90 (170)
Confidence 5688888888876 356799999999999999999999999999999999999999999999985 45555 7889999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+.|||++.+++||+||++||+....|++||++|.||+..+.+ |+...
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~ 137 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS--LVEAH 137 (170)
Confidence 999999999999999999999999999999999999776544 44443
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.46 E-value=2.9e-13 Score=152.89 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC----
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---- 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P---- 598 (2062)
.|++||..++.++.. +.++|+...+|.|||+..+..+.......+....+|||||+ .++.||..++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 489999999998876 57899999999999998665554443333334579999998 688999999998875
Q ss_pred --CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHcc
Q 000139 599 --AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF 672 (2062)
Q Consensus 599 --~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L 672 (2062)
++++..++|.......... ....++|+|+|++.+..... .+....+++||+||||++.+. .......+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEK---LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCC---CSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHHHH---cCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 5677788877654432221 12467899999998875422 223346799999999998643 34444455555
Q ss_pred c-CceEEEEeccCCCCChHH
Q 000139 673 N-SKRRILLTGTPLQNDLME 691 (2062)
Q Consensus 673 ~-a~~RLLLTGTPLQNsL~E 691 (2062)
. ..+++++|||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 4 45789999997 444444
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.46 E-value=5.5e-13 Score=148.56 Aligned_cols=155 Identities=18% Similarity=0.127 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC---C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP---A 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P---~ 599 (2062)
.|++||..++..+.. +.++|+...+|.|||+.++..+...........++|||||+ .++.||...+.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 589999999998765 57899999999999987765554433222333579999998 578899999998874 6
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHccc-C
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-S 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a 674 (2062)
.++..++|..........- ...++|+|+|++.+..... .+...++++||+||||++... .......+..++ .
T Consensus 101 ~~~~~~~g~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL---DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT---TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHHHhc---CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7888888876544332221 2467899999998865432 223346899999999998653 333334444454 5
Q ss_pred ceEEEEeccCC
Q 000139 675 KRRILLTGTPL 685 (2062)
Q Consensus 675 ~~RLLLTGTPL 685 (2062)
.+++++|||+-
T Consensus 178 ~~~l~~SAT~~ 188 (206)
T 1vec_A 178 RQILLYSATFP 188 (206)
T ss_dssp CEEEEEESCCC
T ss_pred ceEEEEEeeCC
Confidence 68899999984
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.46 E-value=3.3e-13 Score=153.95 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=111.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~---P~ 599 (2062)
.|++||..++..+.. +.+.|+...+|.|||++.+..+.......+..+.+|||||+ .++.||..++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 489999999998764 67899999999999998654443332223344689999998 68999999999986 46
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC---hhhHHHHHHHccc-
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNFN- 673 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN---~~Sk~~qaL~~L~- 673 (2062)
+++..++|.......... + ...+|+|+|++.+..... .+...++++||+||||++-+ +.......+..++
T Consensus 122 ~~~~~~~g~~~~~~~~~~-~---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR-L---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHHHH-T---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHHHh-c---cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 889888887554332221 1 357899999999876422 23334688999999999844 3444444555564
Q ss_pred CceEEEEeccCC
Q 000139 674 SKRRILLTGTPL 685 (2062)
Q Consensus 674 a~~RLLLTGTPL 685 (2062)
..++++||||+-
T Consensus 198 ~~~~l~lSAT~~ 209 (230)
T 2oxc_A 198 SKQMLAVSATYP 209 (230)
T ss_dssp SCEEEEEESCCC
T ss_pred CCeEEEEEeccC
Confidence 557899999963
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.44 E-value=4.7e-13 Score=167.60 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=80.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE--
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-- 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf-- 1158 (2062)
.+.++|||+......+.+...|...|+.+..++| ++|..+++.|.+ +.+.| |++|.+.+.|||+. +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~-g~~~v-LVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ-KKPDF-ILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSE-EEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC-CCceE-EEECChhheeeccC-ceEEEeCC
Confidence 3679999999999999999999999999999999 468899999986 56666 68899999999999 999986
Q ss_pred -----------------ecCCCChhhHHHHHHhhhccCCcCcEEEEEEE
Q 000139 1159 -----------------YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLI 1190 (2062)
Q Consensus 1159 -----------------yD~dWNPa~d~QA~gRahRIGQTRdV~VYRLI 1190 (2062)
||.+.++....|+.||++|.|... -..|.|+
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~-g~~~~l~ 296 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD-GDSYYYS 296 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC-CEEEEEC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC-ceEEEEe
Confidence 899999999999999999985332 2334454
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=153.04 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=111.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc----CCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK----GIWGPHLIVVPT-SVMLNWETEFLKWCP 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~----g~~Gp~LIVvPt-SLL~QW~~Efkkw~P 598 (2062)
.|++||..++.++.. +.++|+..++|.|||++.+..+....... .....+|||||+ .++.||..+++++++
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 479999999998865 67899999999999998766555433221 223468999999 788999999999986
Q ss_pred C--CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh---hhccCeeEEEEcCccccCCh--hhHHHHHHHc
Q 000139 599 A--FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 671 (2062)
Q Consensus 599 ~--lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~---L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~ 671 (2062)
. +++..++|.......... + ..++|+|+|++.+...... +....+++||+||||++.+. .......+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~-~---~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAER-I---NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHH-H---TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHHHh-C---CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 788888887654322221 1 3578999999998765322 33457899999999998653 3444455555
Q ss_pred cc-CceEEEEeccCC
Q 000139 672 FN-SKRRILLTGTPL 685 (2062)
Q Consensus 672 L~-a~~RLLLTGTPL 685 (2062)
+. ..++++||||+-
T Consensus 199 ~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 199 LPKKRQTLLFSATQT 213 (236)
T ss_dssp SCTTSEEEEEESSCC
T ss_pred CCCCCeEEEEEeeCC
Confidence 54 456899999974
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.43 E-value=4.3e-13 Score=168.46 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec-
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD- 1160 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD- 1160 (2062)
+.++|||++.....+.|...|...|+.+..|+|.+ ++.+++.|.. +.+.| |++|.+.+.|||+.. +.||.||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~v-LVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL-TDWDF-VVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS-SCCSE-EEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc-CCceE-EEECCHHHhCcCCCC-CEEEECCC
Confidence 45899999999999999999999999999999975 4678999985 56666 789999999999999 9999988
Q ss_pred -------------------CCCChhhHHHHHHhhhccCCcC
Q 000139 1161 -------------------SDWNPAMDQQAQDRCHRIGQTR 1182 (2062)
Q Consensus 1161 -------------------~dWNPa~d~QA~gRahRIGQTR 1182 (2062)
.+.++....|++||++|.|...
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8899999999999999999733
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.42 E-value=6.7e-13 Score=153.78 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~l 600 (2062)
.|++||..++..+.. +.+.|+...+|.|||++.+..+.......+....+|||||+ .+..||..+|.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 589999999998764 67899999999999998766665544444444579999999 678899999999875 57
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh---hhccCeeEEEEcCccccCCh--hhHHHHHHHccc-C
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-S 674 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~---L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a 674 (2062)
++..++|..........- ...++|+|+|++.+...... +.-..+++||+||||++.+. .......+..+. .
T Consensus 141 ~~~~~~g~~~~~~~~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL---AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CEEEECTTSCHHHHHHHH---HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eEEEEECCCChHHHHHHh---cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 788888765433222111 13678999999998765322 23346899999999998653 344445555554 5
Q ss_pred ceEEEEeccCC
Q 000139 675 KRRILLTGTPL 685 (2062)
Q Consensus 675 ~~RLLLTGTPL 685 (2062)
.++++||||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 67899999985
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.42 E-value=4.6e-13 Score=168.55 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE---
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF--- 1158 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf--- 1158 (2062)
+.++|||+......+.|...|...|+.+..|+|. +|+.++++|.. +.+.| |++|.+++.|||+.+ ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~-g~~~i-LVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS-CCCSE-EEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC-CCceE-EEECChHHhCeecCC-CEEEECCc
Confidence 5689999999999999999999999999999994 67888999975 55666 789999999999998 99998
Q ss_pred -----------------ecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1159 -----------------YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1159 -----------------yD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
||.+.++....|++||++|.|.. +-..|.|++....+
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~~~~ 316 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGATSED 316 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCCCCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEcccccc
Confidence 88999999999999999999963 33456677765433
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.42 E-value=9e-13 Score=148.92 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~l 600 (2062)
.|++||..++..+.. +.++|+...+|.|||++.+..+..........+.+|||||+ .++.||..++.++++ ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 489999999998765 57899999999999988544443332223344589999999 678999999999975 57
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a~ 675 (2062)
++..++|......... . ....+|+|+|++.+..... .+...++++||+||||++... .......+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~~-~---~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDAE-G---LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHHh-c---CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 7888887654332211 1 1237899999998865422 223346899999999998543 333444444443 45
Q ss_pred eEEEEeccCC
Q 000139 676 RRILLTGTPL 685 (2062)
Q Consensus 676 ~RLLLTGTPL 685 (2062)
++++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 7899999985
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.41 E-value=7e-13 Score=173.76 Aligned_cols=121 Identities=19% Similarity=0.180 Sum_probs=94.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE--
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-- 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf-- 1158 (2062)
.+.++|||+......+.|...|...|+.+..|+|. +|+.+++.|.. +.+.| |++|.+.+.|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~-g~~~V-LVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT-CCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC-CCceE-EEECchhhcceeeC-CcEEEECC
Confidence 46799999999999999999999999999999993 79999999985 56666 68899999999999 999997
Q ss_pred ------------------ecCCCChhhHHHHHHhhhcc-CCcCcEEEEEEEeC-CCHHHHHHHHHHHHHHHH
Q 000139 1159 ------------------YDSDWNPAMDQQAQDRCHRI-GQTREVHIYRLISE-STIEENILKKANQKRALD 1210 (2062)
Q Consensus 1159 ------------------yD~dWNPa~d~QA~gRahRI-GQTRdV~VYRLIse-~TIEE~Ilkka~qKr~L~ 1210 (2062)
||.+.++....|++||++|. |+.-. .|.|+.. ..-|..++.....+..|.
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~--ai~l~~~~~~~d~~~l~~ie~~~~l~ 551 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD--EYHYGGGTSEDDTMLAHWTEAKILLD 551 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE--EEEECSCCCCCCTTBHHHHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE--EEEEEecCChhHHHHHHHHHHHHhhh
Confidence 56788889999999999999 44433 3444421 112334444444444333
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.39 E-value=1.2e-12 Score=150.04 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--AF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~l 600 (2062)
.|++||..++..++. +.++|+...+|.|||++.+..+............+|||||+ .++.||..++.+++. ++
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 489999999998764 57899999999999988655554433222334589999998 688999999999985 46
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccC--ChhhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIK--NWKSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IK--N~~Sk~~qaL~~L~-a~ 675 (2062)
.+..++|......... ....+.++|+|+|++.+..... .+....+++||+||||++. ++.......+..++ ..
T Consensus 128 ~~~~~~g~~~~~~~~~--~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQ--KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHHH--HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 7777777654332211 1222447899999988765422 2333468999999999884 44455555666664 45
Q ss_pred eEEEEeccCC
Q 000139 676 RRILLTGTPL 685 (2062)
Q Consensus 676 ~RLLLTGTPL 685 (2062)
+.+++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 7899999984
No 71
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.38 E-value=2.4e-12 Score=153.61 Aligned_cols=125 Identities=21% Similarity=0.281 Sum_probs=109.0
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..+|.... +.++|||+......+.|...|...|+.+..++|.++..+|+.+++.|.. +.+.| |++|.+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~-g~~~v-LVaT~v 87 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ-GEVRV-LVATDV 87 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH-TSCCE-EEECST
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-CCceE-EEEech
Confidence 3679999999998753 7899999999999999999999999999999999999999999999986 45666 688999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
++.|||+.++++||+||++|++....|++||++|.|+. -.+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 99999999999999999999999999999999999976 56677887763
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.37 E-value=2.3e-12 Score=148.67 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC---------CCCcEEEEecC-CcHHHHHHHH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG---------IWGPHLIVVPT-SVMLNWETEF 593 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g---------~~Gp~LIVvPt-SLL~QW~~Ef 593 (2062)
.|++||..++..+.. +.++|+...+|.|||+..+..+.......+ ..+.+|||||+ .++.||..++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 589999999998765 578999999999999987665554433221 22479999999 6889999999
Q ss_pred HHHCC--CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh--hhccCeeEEEEcCccccCCh--hhHHHH
Q 000139 594 LKWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV--FKRKKWKYLILDEAHLIKNW--KSQRWQ 667 (2062)
Q Consensus 594 kkw~P--~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~--L~r~~W~lVILDEAH~IKN~--~Sk~~q 667 (2062)
.+++. ++++..++|..........- ...++|+|+|++.+...... +.-..+.+||+||||++.+. ......
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREV---QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHH---SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHh---CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99875 46777777765433322211 14678999999998764321 22345789999999998543 334444
Q ss_pred HHHcc--c---CceEEEEeccCC
Q 000139 668 TLLNF--N---SKRRILLTGTPL 685 (2062)
Q Consensus 668 aL~~L--~---a~~RLLLTGTPL 685 (2062)
.+..+ . ..+++++||||-
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHhhccCCCCCCcEEEEEEEeCC
Confidence 44432 2 346899999974
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.36 E-value=6.7e-12 Score=164.33 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=93.5
Q ss_pred EEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCcccCCEEEEecC---
Q 000139 1086 LIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINLVGADTVIFYDS--- 1161 (2062)
Q Consensus 1086 LIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~--- 1161 (2062)
|||+.....++.|...|...|+.+..++|+++.++|..+++.|+. ++.+.| |++|.+.+.|||+ .+++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcccc
Confidence 677777888999999999999999999999999999999999996 345666 7889999999999 9999999999
Q ss_pred -----------CCChhhHHHHHHhhhccCCc-CcEEEEEEEeC
Q 000139 1162 -----------DWNPAMDQQAQDRCHRIGQT-REVHIYRLISE 1192 (2062)
Q Consensus 1162 -----------dWNPa~d~QA~gRahRIGQT-RdV~VYRLIse 1192 (2062)
++++....|+.||++|.|+. ..-.||+|...
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88899999999999999987 45778877654
No 74
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.35 E-value=8.5e-11 Score=154.12 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=102.3
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.+|..++......|..|||||......+.|...|...|+++..|+|.....+|..+.+.|... .| +++|..+
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~V-tIATnmA 518 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---GV-TVATNMA 518 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---CE-EEEETTC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eE-EEecchh
Confidence 4699999999988888899999999999999999999999999999999998756665566666542 34 7899999
Q ss_pred ccccCcccC----------------------------------------------------CEEEEecCCCChhhHHHHH
Q 000139 1145 GVGINLVGA----------------------------------------------------DTVIFYDSDWNPAMDQQAQ 1172 (2062)
Q Consensus 1145 G~GLNLT~A----------------------------------------------------DtVIfyD~dWNPa~d~QA~ 1172 (2062)
|.|+++... .+||.||.+-++..+.|++
T Consensus 519 gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~ 598 (922)
T 1nkt_A 519 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 598 (922)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred hcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHh
Confidence 999998753 5999999999999999999
Q ss_pred HhhhccCCcCcEEEEEEEeC
Q 000139 1173 DRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1173 gRahRIGQTRdV~VYRLIse 1192 (2062)
||++|.|..-.. .-|++.
T Consensus 599 GRTGRqGdpG~s--~fflSl 616 (922)
T 1nkt_A 599 GRSGRQGDPGES--RFYLSL 616 (922)
T ss_dssp HTSSGGGCCEEE--EEEEET
T ss_pred cccccCCCCeeE--EEEech
Confidence 999999964333 334554
No 75
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.35 E-value=1.7e-11 Score=160.76 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=102.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.+|..+|..+...|.+|||||......+.|...|...|+.+..|+|.....+|..+...|.. ..| +++|..+
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g~V-lIATdmA 490 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---GAV-TIATNMA 490 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---TCE-EEEETTS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---CeE-EEeCCcc
Confidence 469999999998877778899999999999999999999999999999999876666655555543 234 7899999
Q ss_pred ccccCcc--------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1145 GVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1145 G~GLNLT--------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
|.|+++. +..+||.||.+-++..+.|++||++|.|..-.. +-|++.
T Consensus 491 gRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s--~~~vs~ 544 (844)
T 1tf5_A 491 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT--QFYLSM 544 (844)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE--EEEEET
T ss_pred ccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE--EEEecH
Confidence 9999998 788999999999999999999999999964433 334443
No 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=141.41 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=107.1
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc-CCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-GIWGPHLIVVPT-SVMLNWETEFLKWCP--A 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~-g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~ 599 (2062)
.|++||..++..+.. +.+.|+...+|.|||+..+..+....... +....+|||||+ .++.||..++.+++. +
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 489999999987765 67799999999999998655544433322 223368999999 588999999999986 4
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh----hhhccCeeEEEEcCccccCC-----hhhHHHHHHH
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK----VFKRKKWKYLILDEAHLIKN-----WKSQRWQTLL 670 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~----~L~r~~W~lVILDEAH~IKN-----~~Sk~~qaL~ 670 (2062)
+++..++|...... .........++|+|+|++.+..... .+.-.++.+||+||||++-. +.......+.
T Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHT--TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHH--HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 56666655443322 1112234578999999998865432 22334689999999999854 3333334443
Q ss_pred cc--cCceEEEEeccC
Q 000139 671 NF--NSKRRILLTGTP 684 (2062)
Q Consensus 671 ~L--~a~~RLLLTGTP 684 (2062)
.+ ...++++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 43 345789999998
No 77
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.32 E-value=1.7e-11 Score=159.57 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEE----
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTV---- 1156 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtV---- 1156 (2062)
.+.++|||+......+.|...|...|+.+..|+|. +|..++++|.+ +.+.| |++|.+.+.|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~-g~~~V-LVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL-TDWDF-VVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH-SCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC-CCcEE-EEECcHHHcCcccC-ceEEEECc
Confidence 35689999999999999999999999999999984 78899999986 45656 78999999999995 8988
Q ss_pred ----------------EEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1157 ----------------IFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1157 ----------------IfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
|+||.+-++....|++||++|.|...- ..|.|++
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 677778888899999999999986433 3566776
No 78
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.31 E-value=1.9e-10 Score=163.67 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHH-HCC--C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLK-WCP--A 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkk-w~P--~ 599 (2062)
.+.|.|..++.-++ ..+.|.+++-.+|.|||+.+...|...... +..+.+|+|+|. .|..|=..+|.+ +.+ +
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~-~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQ-SSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHh-CCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 47899999987654 467899999999999999886555544432 334679999998 566665566643 433 6
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhh----ccCeeEEEEcCccccCChhhHHHHHH-Hc---
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFK----RKKWKYLILDEAHLIKNWKSQRWQTL-LN--- 671 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~----r~~W~lVILDEAH~IKN~~Sk~~qaL-~~--- 671 (2062)
.+|..++|......... ...+|+|+|++.+........ -....+||+||+|.|.......+..+ ..
T Consensus 1002 ~~V~~ltGd~~~~~~~~------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLL------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHHHH------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhhc------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 78888888765443222 246899999997633211111 12468999999999976443333222 11
Q ss_pred ----c-cCceEEEEeccC
Q 000139 672 ----F-NSKRRILLTGTP 684 (2062)
Q Consensus 672 ----L-~a~~RLLLTGTP 684 (2062)
+ +..+.++||||-
T Consensus 1076 i~~~~~~~~riI~lSATl 1093 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSL 1093 (1724)
T ss_dssp HHHTTSSCCEEEEEESCB
T ss_pred HHhhcCCCceEEEEeCCC
Confidence 2 234789999993
No 79
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.31 E-value=5.4e-11 Score=155.76 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.+|..+|..+...|..|||||......+.|...|...|+++..|+|.....+|..+.+.|... . ++++|..+
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmA 499 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATNMA 499 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecccc
Confidence 4699999999988878899999999999999999999999999999999998766776677777643 2 47899999
Q ss_pred ccccCcccC-------------------------------------CEEEEecCCCChhhHHHHHHhhhccCCcCc
Q 000139 1145 GVGINLVGA-------------------------------------DTVIFYDSDWNPAMDQQAQDRCHRIGQTRE 1183 (2062)
Q Consensus 1145 G~GLNLT~A-------------------------------------DtVIfyD~dWNPa~d~QA~gRahRIGQTRd 1183 (2062)
|.|+++... .+||.||.+-++..+.|++||++|.|..-.
T Consensus 500 gRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 500 GRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp SSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 999999752 599999999999999999999999996433
No 80
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.28 E-value=2.9e-11 Score=160.98 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=94.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHH-----------cCCcEEEecCCCCHHHHHHHHHHHhc----CCCceEEEEeccccc
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISL-----------YGYTYMRLDGSTQPEERQTLMQRFNT----NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~-----------~Gi~y~RLDGsTs~eqRq~lmerFN~----D~~IfVfLLSTrAGG 1145 (2062)
.+.+||||+......+.+...|.. .++.++.++|+++.++|+.+++.|.. ++.+.| |++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHH
Confidence 467999999999999998888874 68889999999999999999999971 345555 78999999
Q ss_pred cccCcccCCEEEEecC------------------CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1146 VGINLVGADTVIFYDS------------------DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~------------------dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
.|||+.+.+.||.++. +.++....|+.||++|. ++-.+|+|+++...
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999555 78889999999999997 56788899865443
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=137.92 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHh------cCCCCcEEEEecC-CcHHHHHHHHHHH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACE------KGIWGPHLIVVPT-SVMLNWETEFLKW 596 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~------~g~~Gp~LIVvPt-SLL~QW~~Efkkw 596 (2062)
.|++||..++..+.. +.++|+...+|.|||+..+..+...... ....+.+|||||+ .+..||..++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 589999999988764 6789999999999998866544433221 1234568999999 5789999999998
Q ss_pred C-CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHc
Q 000139 597 C-PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 671 (2062)
Q Consensus 597 ~-P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~ 671 (2062)
. +++++..++|.......... + ...++|+|+|++.+..... .+.-.++++||+||||++.+. .......+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIED-I--SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CHHH-H--HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHHHH-h--cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 6 56788887776543322111 0 1357899999998866422 222345899999999997643 3344444555
Q ss_pred cc-CceEEEEeccCC
Q 000139 672 FN-SKRRILLTGTPL 685 (2062)
Q Consensus 672 L~-a~~RLLLTGTPL 685 (2062)
++ ..+.+++|||.-
T Consensus 195 ~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 195 VRPDRQTVMTSATWP 209 (228)
T ss_dssp SCSSCEEEEEESCCC
T ss_pred CCcCCeEEEEEeeCC
Confidence 54 457899999953
No 82
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.23 E-value=2.5e-09 Score=137.82 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
...|+.+|..+|......|.+|||||......+.|...|...|+++..|+|.....+|..+...|.. + . ++++|..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~-g--~-VtVATdm 531 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK-G--M-VTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST-T--C-EEEEETT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC-C--e-EEEEcch
Confidence 3579999999999887789999999999999999999999999999999998544444444445543 2 3 4789999
Q ss_pred cccccCcc--------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1144 GGVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1144 GG~GLNLT--------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
+|.|+++. +..+||.||.+-++..+.|++||++|.|..-... -|++.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~--~fvsl 586 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI--FFLSL 586 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE--EEEET
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE--EEech
Confidence 99999997 7789999999999999999999999999765433 24444
No 83
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.22 E-value=5.9e-11 Score=154.26 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEE---
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVI--- 1157 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVI--- 1157 (2062)
.+.++|||++.....+.|...|+..|+....++|+++.++ |.++. . -+|++|.+.+.|||+. .+.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~-~-~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG-D-VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS-C-EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC-C-cEEEECChHHccCCCC-CcEEEecC
Confidence 4679999999999999999999999999999999998654 33333 3 4578999999999985 99988
Q ss_pred -------Eec-----------CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHH
Q 000139 1158 -------FYD-----------SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE 1196 (2062)
Q Consensus 1158 -------fyD-----------~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIE 1196 (2062)
.|| .+-++....|++||++| |..- . |.|++.+...
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 466 67778899999999999 6543 3 8888876543
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.22 E-value=3.9e-10 Score=160.50 Aligned_cols=150 Identities=18% Similarity=0.089 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC--------CCCcEEEEecC-CcHHHHHHHHH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG--------IWGPHLIVVPT-SVMLNWETEFL 594 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g--------~~Gp~LIVvPt-SLL~QW~~Efk 594 (2062)
.|.+.|...+.-+ +..+.|.+++-.+|.|||+.+...|........ ..+.+|+|+|. +|..+=.++|.
T Consensus 79 ~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 5889999988654 456889999999999999988655554433211 23468999998 56666677776
Q ss_pred HHCC--CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc------hhhhhccCeeEEEEcCccccCChhhHHH
Q 000139 595 KWCP--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD------SKVFKRKKWKYLILDEAHLIKNWKSQRW 666 (2062)
Q Consensus 595 kw~P--~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d------~~~L~r~~W~lVILDEAH~IKN~~Sk~~ 666 (2062)
+.+. +++|..++|........ ....+|+|||++.+..- ...+ ....+|||||+|.|.......+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~------~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE------ISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT------GGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc------cCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 5442 57888888865322111 13578999999876321 1122 2468999999999976332222
Q ss_pred HHH-----H---cc-cCceEEEEeccC
Q 000139 667 QTL-----L---NF-NSKRRILLTGTP 684 (2062)
Q Consensus 667 qaL-----~---~L-~a~~RLLLTGTP 684 (2062)
..+ + .+ ...++++||||-
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl 254 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATL 254 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 221 1 12 234789999993
No 85
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.19 E-value=1.1e-10 Score=134.19 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=107.1
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc-----CCCCcEEEEecC-CcHHHHHHHHHHHC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-----GIWGPHLIVVPT-SVMLNWETEFLKWC 597 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~-----g~~Gp~LIVvPt-SLL~QW~~Efkkw~ 597 (2062)
.+++||..++..+.. +.++|+...+|.|||+..+..+....... +..+.+|||||+ .++.||...+++++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 479999999988765 67899999999999998665544433321 234568999998 57889999998876
Q ss_pred C--CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHc
Q 000139 598 P--AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 671 (2062)
Q Consensus 598 P--~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~ 671 (2062)
. ++++..++|..........- ...++|+|+|++.+..... .+.-.++.+||+||||++-.. .......+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDL---ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHH---HHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHHHHh---cCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 3 57788777765433221110 0247899999998865432 223346789999999998543 3334444445
Q ss_pred c-cCceEEEEeccC
Q 000139 672 F-NSKRRILLTGTP 684 (2062)
Q Consensus 672 L-~a~~RLLLTGTP 684 (2062)
+ ...+.+++|||+
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 5 345789999996
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.18 E-value=8.1e-11 Score=137.34 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc----CCCCcEEEEecC-CcHHHHHHHHHHHCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK----GIWGPHLIVVPT-SVMLNWETEFLKWCP 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~----g~~Gp~LIVvPt-SLL~QW~~Efkkw~P 598 (2062)
.|+++|..++..+.. +.+.|+...+|.|||+.++..+....... ...+.+|||||+ .|+.||..++++++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 489999999987766 57789999999999998665554433321 123468999999 688999999999875
Q ss_pred --CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhh---hhccCeeEEEEcCccccCCh--hhHHHHHHHc
Q 000139 599 --AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKV---FKRKKWKYLILDEAHLIKNW--KSQRWQTLLN 671 (2062)
Q Consensus 599 --~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~---L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~ 671 (2062)
+..+..+.|..........- ..+++|+|+|++.+...... +.-.++.+|||||||++-.. .......+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL---GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH---HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHHHHh---cCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 35666677655433222110 02478999999988654322 23345799999999997543 3444444555
Q ss_pred cc-CceEEEEeccCC
Q 000139 672 FN-SKRRILLTGTPL 685 (2062)
Q Consensus 672 L~-a~~RLLLTGTPL 685 (2062)
+. ..+.++||||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 53 457899999975
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=130.30 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC---CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC---PA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~---P~ 599 (2062)
.++++|..++..++. ..+.+.|+...+|.|||+..+..+.......+....+|||||+ .|..|+...+.+++ ++
T Consensus 114 ~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 114 RPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp SCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 479999999977654 1247889999999999987653333332223333468999999 47788888887765 57
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh---hhhccCeeEEEEcCccccCC---hhhHHHHHHHccc
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK---VFKRKKWKYLILDEAHLIKN---WKSQRWQTLLNFN 673 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~---~L~r~~W~lVILDEAH~IKN---~~Sk~~qaL~~L~ 673 (2062)
+.+..++|....... .....+|+|+|+..+..... .+.-....+|||||||++-. +.......+..+.
T Consensus 192 ~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 192 LKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp CCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred cEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 888888776543211 12457899999998865432 23334678999999999753 2223333333343
Q ss_pred -CceEEEEeccCCC
Q 000139 674 -SKRRILLTGTPLQ 686 (2062)
Q Consensus 674 -a~~RLLLTGTPLQ 686 (2062)
..+.+++|||+-.
T Consensus 266 ~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 266 RNCQMLLFSATFED 279 (300)
T ss_dssp TTCEEEEEESCCCH
T ss_pred CCCEEEEEeccCCH
Confidence 3578999999853
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.92 E-value=1.7e-08 Score=132.48 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.+++..|...|......|.+||||+....+.+.|..+|..+|+.+..++|.++..+|..++++|.. +.+.| |++|...
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~V-LVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYDV-LVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCSE-EEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeEE-EEecchh
Confidence 356777777777777788999999999999999999999999999999999999999999999986 55665 7889999
Q ss_pred ccccCcccCCEEEEecC-----CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCH
Q 000139 1145 GVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISESTI 1195 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TI 1195 (2062)
+.|+++..++.||+||. ++++....|++||++|- +.-.++.|+...+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 89999999999999996 34556678877653
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.88 E-value=1.2e-08 Score=134.00 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.+++..|...|......|.+||||+....+.+.|..+|..+|+.+..++|.++..+|..+++.|.. +.+.| |++|.+.
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~V-LvaT~~l 499 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYDC-LVGINLL 499 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCSE-EEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCceE-EEccChh
Confidence 367777777787777789999999999999999999999999999999999999999999999975 56665 7889999
Q ss_pred ccccCcccCCEEEEecC-----CCChhhHHHHHHhhhccCCcCcEEEEEEEeCCC
Q 000139 1145 GVGINLVGADTVIFYDS-----DWNPAMDQQAQDRCHRIGQTREVHIYRLISEST 1194 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~-----dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~T 1194 (2062)
+.|||+..++.||+||. ++++....|++||++|.|. -.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8999999999999999863 34666777765
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.66 E-value=2e-06 Score=113.17 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=92.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH----HHHHHHHHHHCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM----LNWETEFLKWCP 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL----~QW~~Efkkw~P 598 (2062)
....+-|..|+--|+. +. |....+|.|||+.+...+. +....| ..++||+|+.-| .+|...|.+++
T Consensus 78 ~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~G--~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALTG--KGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTTC--SCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHhC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 3568999999865543 32 8888899999997643332 222223 368999999654 33888887776
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhh----hch-----hhhhcc---CeeEEEEcCccccCChhhHHH
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLII----QDS-----KVFKRK---KWKYLILDEAHLIKNWKSQRW 666 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~----~d~-----~~L~r~---~W~lVILDEAH~IKN~~Sk~~ 666 (2062)
++++.+.+|...... .+.. ...+|++.|...+. ++. ..+... ...++||||+|.+--.
T Consensus 148 GLsv~~i~Gg~~~~~-r~~a----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD----- 217 (997)
T 2ipc_A 148 GLSVGVIQHASTPAE-RRKA----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID----- 217 (997)
T ss_dssp TCCEEECCTTCCHHH-HHHH----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-----
T ss_pred CCeEEEEeCCCCHHH-HHHH----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-----
Confidence 578877776543221 1111 14689999998873 221 112223 6789999999964311
Q ss_pred HHHHcccCceEEEEeccCCCCChHHHHHHHH
Q 000139 667 QTLLNFNSKRRILLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 667 qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~ 697 (2062)
.+..-+.+|| |.... ..+|..+.
T Consensus 218 ------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 218 ------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp ------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred ------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 2233489999 88776 45554433
No 91
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.65 E-value=1.7e-08 Score=90.15 Aligned_cols=49 Identities=31% Similarity=0.519 Sum_probs=43.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
.++||++||++|..+|..||+ ||..|+..| + + ..|++++|++||+.++.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~---~----~--~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY---K----F--NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---C----C--SSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc---C----C--CCCCHHHHHHHHHHHHc
Confidence 689999999999999999996 899999987 2 1 14999999999999874
No 92
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.64 E-value=1.9e-08 Score=93.38 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=43.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
..++||++||++|..+|..||+ ||..|+..+ + + ..|++++|++||++|+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~---~----~--~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY---P----F--VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---C----C--SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhc---C----C--CCCCHHHHHHHHHHHhc
Confidence 4789999999999999999997 899999865 2 1 23999999999999875
No 93
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.63 E-value=1.8e-08 Score=89.46 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=43.0
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
.++||++||++|..+|..||. ||..||..| + .|++.+|++||..++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL---P--------NRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS---T--------TCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---C--------CCCHHHHHHHHHHHcC
Confidence 689999999999999999999 999999977 2 3999999999999873
No 94
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.59 E-value=1.8e-08 Score=89.63 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=42.0
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
.++||++||++|..+|..||+ ||..||..| + .|++++|++||..++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS---T--------TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc---C--------CCCHHHHHHHHHHHc
Confidence 689999999999999999998 799999977 2 399999999999875
No 95
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=7.3e-08 Score=89.90 Aligned_cols=55 Identities=16% Similarity=0.390 Sum_probs=49.1
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1726 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1726 (2062)
.++||++||++|..+|..||.+|..||. | + | |++++|++||..++.....-..++
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~---~------g--Rt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-I---I------G--RTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-H---H------S--SCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-c---c------C--cCHHHHHHHHHHHhChHhcCCCCC
Confidence 7899999999999999999999999999 6 1 2 999999999999999987765544
No 96
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=4.4e-08 Score=89.60 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=43.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
..++||++||++|..+|..||+ ||..||..| + .|++++|++||..++.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHF---P--------NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC---S--------SSCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---c--------CCCHHHHHHHHHHHcC
Confidence 3789999999999999999997 899999987 2 3999999999998764
No 97
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.50 E-value=7.5e-08 Score=90.61 Aligned_cols=52 Identities=29% Similarity=0.415 Sum_probs=45.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
..++||++||++|..+|..||+ ||..|+..| +- ..|++++|++||+.++...
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~---~~------~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY---KF------NNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS---CC------SSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc---Cc------CCCCHHHHHHHHHHHcCCC
Confidence 3799999999999999999996 899999987 21 1599999999999998754
No 98
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.48 E-value=8.4e-08 Score=87.31 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=41.9
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
.++||++||+.|..+|..|| .||..||..| . ..|++++|++||..+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~---~-------~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYV---G-------NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHH---C-------SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHH---C-------CCCCHHHHHHHHHHHc
Confidence 68899999999999999999 6999999988 2 1599999999998763
No 99
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.46 E-value=1.1e-07 Score=87.01 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=42.5
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYG-PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
.++||++||++|..+|..|| .||..||..| -.|++++|++||..++.
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-----------~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQM-----------CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-----------TTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-----------CCCCHHHHHHHHHHHcc
Confidence 78999999999999999999 5999999988 23999999999998753
No 100
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=89.28 Aligned_cols=48 Identities=33% Similarity=0.657 Sum_probs=43.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
..++||++||++|..+|..||+ ||..|+..| + .|++++|++||..++.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLL---H--------RKSAKQCKARWYEWLD 56 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS---T--------TCCHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh---c--------CCCHHHHHHHHHHHcC
Confidence 3789999999999999999995 899999988 2 4999999999998764
No 101
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.36 E-value=1.2e-06 Score=112.72 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=91.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~ 599 (2062)
..+||||...+.-+......+..+|+-..+|.|||+..+.-+.. ..+++||++|+ .+..||..++.+... +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999999877777777888999999999999876544433 13589999999 478889999987643 5
Q ss_pred CeEEEEeCChhhHHh-------------hhhccCC-----------------------------------CCCceEEEEe
Q 000139 600 FKILTYFGSAKERKF-------------KRQGWLK-----------------------------------PNSFHVCITT 631 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~-------------~r~gw~k-----------------------------------~~~fdVVITS 631 (2062)
+++.+..|...--.. .-..|.. ....+|||++
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 777777764321000 0000110 1245899999
Q ss_pred hhhhhhchhh--hh-ccCeeEEEEcCccccCC
Q 000139 632 YRLIIQDSKV--FK-RKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 632 Ye~l~~d~~~--L~-r~~W~lVILDEAH~IKN 660 (2062)
|..+..+... +. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999876311 11 13567899999999975
No 102
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.35 E-value=1.9e-06 Score=98.75 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=91.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC--CCcEEEEecCC-cHHHHHHHHHHHCCC-
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI--WGPHLIVVPTS-VMLNWETEFLKWCPA- 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~--~Gp~LIVvPtS-LL~QW~~Efkkw~P~- 599 (2062)
++++||...+..+.. +...++.-.+|.|||.+...++.......+. ...+++++|+. +..|....+......
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 478999999988765 6778999999999997665555443333332 23678888985 445566666654421
Q ss_pred --CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCcccc-CChhh--HHHHHHH-ccc
Q 000139 600 --FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLI-KNWKS--QRWQTLL-NFN 673 (2062)
Q Consensus 600 --lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~I-KN~~S--k~~qaL~-~L~ 673 (2062)
..+ .| +... .........+|+|+|...+...... .-.++++|||||||.. -+... ...+.+. ...
T Consensus 137 ~~~~~-g~-~~~~------~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 137 PGKSC-GY-SVRF------ESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp TTSSE-EE-EETT------EEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cCceE-EE-eech------hhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 111 11 1100 0111124578999999887665332 2346799999999973 11111 1222222 234
Q ss_pred CceEEEEeccCCC
Q 000139 674 SKRRILLTGTPLQ 686 (2062)
Q Consensus 674 a~~RLLLTGTPLQ 686 (2062)
..+.+++|||+-.
T Consensus 208 ~~~~il~SAT~~~ 220 (235)
T 3llm_A 208 EVRIVLMSATIDT 220 (235)
T ss_dssp TSEEEEEECSSCC
T ss_pred CCeEEEEecCCCH
Confidence 5678999999753
No 103
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.35 E-value=5.4e-07 Score=91.83 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=59.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+++||++||+.|..+|..||+ ||..||..| + .|++++|++||..++.- .. +.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L~p------------~i-~~~-- 54 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM---I--------TRNPRQCRERWNNYINP------------AL-RTD-- 54 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT---T--------TSCHHHHHHHHHHHSSS------------CC-TTC--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc---C--------CCCHHHHHHHHHHHHcc------------cc-ccc--
Confidence 478999999999999999998 899999988 2 39999999999987631 01 122
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.-|+++-..|+..+.+..++
T Consensus 55 ----~WT~eEd~~L~~~~~~~G~~ 74 (107)
T 2k9n_A 55 ----PWSPEEDMLLDQKYAEYGPK 74 (107)
T ss_dssp ----CCCHHHHHHHHHHHHHTCSC
T ss_pred ----ccCHHHHHHHHHHHHHhCcC
Confidence 47888889999999888764
No 104
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.33 E-value=3.8e-07 Score=95.64 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=61.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
.+++||++||++|..+|..||.||..|+..| + .|++++|++||..++.. .. +.|
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~p------------~~-~~~-- 63 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATF---P--------NRNARQCRDRWKNYLAP------------SI-SHT-- 63 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTC---T--------TCCHHHHHHHHHHHTST------------TS-CCS--
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHc---C--------CCCHHHHHHHHhhhccc------------cc-ccc--
Confidence 4799999999999999999999999999977 2 39999999999987621 11 122
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.-|+++-..|+..+.+.+.+
T Consensus 64 ----~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 64 ----PWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHCSC
T ss_pred ----cCCHHHHHHHHHHHHHHCcC
Confidence 48999999999999888764
No 105
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=5.6e-07 Score=85.36 Aligned_cols=53 Identities=13% Similarity=0.321 Sum_probs=48.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHh
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1722 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1722 (2062)
..++||++||++|..+|..||.+|..||..| -.|++.+|+.||..++.+..-.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-----------~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLI-----------GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-----------SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999988 3499999999999999887554
No 106
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.27 E-value=4.3e-07 Score=92.14 Aligned_cols=73 Identities=23% Similarity=0.466 Sum_probs=59.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCcccccccccc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGS 1737 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1737 (2062)
..++||++||+.|..+|+.||+ ||..||..| + .|++++|++||..++. + .. +.+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~---------p---~~-~~~- 57 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHLN---------P---EV-KKT- 57 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS---T--------TCCHHHHHHHHHHTTC---------C---CC-CCC-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh---c--------CCCHHHHHHHHHhccC---------C---cc-ccc-
Confidence 3789999999999999999998 799999977 2 4999999999998752 1 11 122
Q ss_pred cceeEeechHHHHHHHHHHHhccc
Q 000139 1738 GKALLKVTEDNVRTLLNVAAEQED 1761 (2062)
Q Consensus 1738 ~~~~~~~~~~~~~~~~~~~~~~~~ 1761 (2062)
.-|+++-..|+.++.+.++
T Consensus 58 -----~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 58 -----SWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp -----CCCHHHHHHHHHHHHHHSS
T ss_pred -----CCCHHHHHHHHHHHHHhCC
Confidence 4688888999999888775
No 107
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.26 E-value=1.8e-06 Score=110.86 Aligned_cols=101 Identities=12% Similarity=0.256 Sum_probs=58.2
Q ss_pred HHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccc
Q 000139 1069 QELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVG 1147 (2062)
Q Consensus 1069 q~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~G 1147 (2062)
..+...|..+. ..+.++|||...-.+++.+...|.. +. +.+.|.. ..|..++++|...+.+ .|.+.|.+..+|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~i-l~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKYL-VMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCCE-EEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCeE-EEEEecCceecc
Confidence 34455555443 4467999999999999988887754 33 3445554 3689999999874322 233478899999
Q ss_pred cCccc----CCEEEEecCCCChhhHHHHHHhh
Q 000139 1148 INLVG----ADTVIFYDSDWNPAMDQQAQDRC 1175 (2062)
Q Consensus 1148 LNLT~----ADtVIfyD~dWNPa~d~QA~gRa 1175 (2062)
||+.+ +..||++..|+-+..+..-..|+
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~ 475 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRI 475 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHH
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHH
Confidence 99997 78899999887555443333333
No 108
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.19 E-value=8.8e-07 Score=93.45 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=60.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+|+||++||++|..+|..||+ ||..||..| + .|++++|++||..++.- .. +.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~l~p------------~~-~~~-- 55 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL---P--------NRSPKQCRERWFNHLDP------------AV-VKH-- 55 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC---T--------TSCHHHHHHHHHHHTST------------TC-CCS--
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH---C--------CCCHHHHHHHHhhccCc------------cc-cCC--
Confidence 589999999999999999996 899999977 2 39999999999988731 11 222
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.-|+++-..|+..+.+..++
T Consensus 56 ----~Wt~eEd~~L~~~~~~~G~~ 75 (131)
T 3zqc_A 56 ----AWTPEEDETIFRNYLKLGSK 75 (131)
T ss_dssp ----CCCHHHHHHHHHHHHHSCSC
T ss_pred ----CCCHHHHHHHHHHHHHHCcC
Confidence 47889999999999888864
No 109
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.19 E-value=7.8e-07 Score=84.46 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=41.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
..++||++||++|..+|.+||++|..||..| .|++.+|+.||+.|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l------------gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL------------GRSASSVKDRCRLMK 67 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH------------TSCHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh------------CCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999966 299999999999763
No 110
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.18 E-value=9.5e-07 Score=85.27 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=42.2
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
..++||++||.+|...|..||.||..|+..| -.|++.+|+.||..|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v-----------~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHV-----------GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHH-----------SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHc-----------CCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999988 239999999999876
No 111
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.12 E-value=1.7e-06 Score=90.78 Aligned_cols=73 Identities=23% Similarity=0.431 Sum_probs=59.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCcccccccccc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGS 1737 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1737 (2062)
..++||++||+.|..+|+.||+ ||..|+..| + .|++++|++||..++.. .. ..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p------------~~-~~~- 80 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL---K--------GRIGKQCRERWHNHLNP------------EV-KKT- 80 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS---S--------SCCHHHHHHHHHHTTCS------------SS-CCS-
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh---c--------CCcHHHHHHHHHHhccc------------cc-ccc-
Confidence 3789999999999999999998 699999987 2 49999999999986531 01 122
Q ss_pred cceeEeechHHHHHHHHHHHhccc
Q 000139 1738 GKALLKVTEDNVRTLLNVAAEQED 1761 (2062)
Q Consensus 1738 ~~~~~~~~~~~~~~~~~~~~~~~~ 1761 (2062)
.-|+++-..|+..+.+.++
T Consensus 81 -----~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 81 -----SWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -----CCCHHHHHHHHHHHHHHCS
T ss_pred -----cCCHHHHHHHHHHHHHHCc
Confidence 4688888999999888775
No 112
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.7e-06 Score=82.69 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=44.4
Q ss_pred CCCCChhhhHHHHHHHHhcC------CCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYG------PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1720 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g------~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1720 (2062)
.++||++||++|..+|..|| .||..||..| -.|++++|++||..++.+..
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-----------~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-----------GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-----------SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 5799999988 23999999999988886643
No 113
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.02 E-value=4e-06 Score=85.43 Aligned_cols=50 Identities=30% Similarity=0.599 Sum_probs=45.9
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1720 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1720 (2062)
.++||++||++|..+|.+||++|..||..| -.|++.+|+.||..|+.+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFL-----------KNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-----------SSSCHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHC-----------CCCCHHHHHHHHHHHHhhHH
Confidence 689999999999999999999999999988 34999999999999988743
No 114
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.01 E-value=3.9e-06 Score=81.65 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1661 DVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
.+||++||++|...|..||. ||..|+..- . ..+ ..|++++|+.||++++.+..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~----~~~--~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F----DNA--DHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C----TTC--TTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c----ccc--CCCCHHHHHHHHHHHHHhccC
Confidence 37999999999999999999 999999842 1 112 359999999999999988765
No 115
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.98 E-value=3e-06 Score=88.85 Aligned_cols=56 Identities=21% Similarity=0.536 Sum_probs=46.9
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDN 1726 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~ 1726 (2062)
.++||++||++|..+|.+||.+|..|+..| -.|++.+|+.||..|+.+..+...+.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~l~~k~~~p~~~~ 117 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFF-----------PGRTDIHIKNRWVTISNKLGIPQTQQ 117 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-----------TTCCHHHHHHHHHHHHHHTTC-----
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 689999999999999999999999999976 23999999999999999876654443
No 116
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.21 E-value=1e-06 Score=86.98 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=46.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
.++||++||++|..+|..||.+|..||..| -.|++.+|+.||..++.+..+
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l-----------~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGRNWSAIARMV-----------GSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 789999999999999999999999999987 349999999999999887644
No 117
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.95 E-value=1e-05 Score=83.87 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=47.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
..++||++||++|...|+.||. ||..|+..+. ..+ ..|++++|+.||++++.....
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~-----~~~--~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAF-----ENV--HHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHH-----SSS--CCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhc-----ccc--CCCCHHHHHHHHHHHHhhccC
Confidence 3799999999999999999998 9999998541 122 359999999999999987654
No 118
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.89 E-value=4.5e-06 Score=84.63 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=43.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
..++||++||++|..+|..||++|..||..| + .|++.+|+.||..++.+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l---~--------gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL---P--------GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTC---T--------TCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHc---C--------CCCHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999976 2 39999999999998865
No 119
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.87 E-value=7.9e-06 Score=88.87 Aligned_cols=73 Identities=23% Similarity=0.470 Sum_probs=59.4
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
.++||++||+.|..+|+.||+ +|..||..| + .|++++|++||..++.. .. ..+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p------------~~-~~~-- 111 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHLNP------------EV-KKT-- 111 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS---T--------TCCHHHHHHHHHHTTCT------------TS-CCS--
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHc---C--------CCCHHHHHHHHHHHhCc------------cc-ccc--
Confidence 689999999999999999998 699999977 2 49999999999987521 01 111
Q ss_pred ceeEeechHHHHHHHHHHHhccch
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQEDN 1762 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~~ 1762 (2062)
.-|+++-+.|+..+.+.+++
T Consensus 112 ----~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 112 ----SWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp ----CCCHHHHHHHHHHHHHHCSC
T ss_pred ----CCChHHHHHHHHHHHHHCCC
Confidence 46888889999999887753
No 120
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.85 E-value=3.2e-05 Score=80.06 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=47.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
..++||++||++|...|..||. +|..|+..+.. .+ ..|++++|+.||++|+.....
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~-----~f--~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD-----NA--DHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS-----CC--SSCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc-----cc--CCCCHHHHHHHHHHHHhhhcc
Confidence 3799999999999999999998 99999986611 12 359999999999999987654
No 121
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.78 E-value=6.2e-06 Score=87.00 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=47.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSV 1723 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~ 1723 (2062)
.++||++||++|..+|.+||++|..||..| -.|++.+|+.||..++.+.....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLI-----------PGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTS-----------TTCCHHHHHHHHHHTTGGGCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999999999977 24999999999999998765443
No 122
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.77 E-value=6.8e-05 Score=97.92 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHC--CC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWC--PA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~--P~ 599 (2062)
+.+||+|++.+.-+......+.++|+...+|.|||+..+.-+.......+ ++++|++|+ .+..|+.+++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 35799999999887777778899999999999999987655444433333 478999998 57888999988764 25
Q ss_pred CeEEEEeCC
Q 000139 600 FKILTYFGS 608 (2062)
Q Consensus 600 lkVl~y~Gs 608 (2062)
+++++..|.
T Consensus 80 ~~~~~l~gr 88 (620)
T 4a15_A 80 IRAIPMQGR 88 (620)
T ss_dssp CCEEECCCH
T ss_pred eEEEEEECC
Confidence 777776663
No 123
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.73 E-value=1.3e-05 Score=76.19 Aligned_cols=48 Identities=15% Similarity=0.497 Sum_probs=42.9
Q ss_pred CCCCCChhhhHHHHHHHHhcC----CCchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYG----PNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g----~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
..++||++||.+|..+|..|| .+|..|+..| + .|++++|+.||..|++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v---p--------GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV---P--------SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC---S--------SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc---C--------CCCHHHHHHHHHHHHH
Confidence 378999999999999999999 3699999987 3 3999999999999974
No 124
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.69 E-value=2.8e-05 Score=78.70 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
...+||++||++|...|..||. +|..|+..+ ...+ ..|++++|+.||++|+.....
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-----~~~f--~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-----FEDA--DHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-----SSST--TCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-----cccc--CCCCHHHHHHHHHHHHhhccC
Confidence 3799999999999999999998 999998843 1223 359999999999999986543
No 125
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.68 E-value=8.3e-06 Score=88.71 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=25.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCCCCccccccccccc
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSG 1738 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2062)
+++||++||++|..+|..||+ ||..|+..| + .|++++|++||..++.- . ...+
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qcr~Rw~~~l~p------------~-~~~~-- 59 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL---P--------NRTDVQCQHRWQKVLNP------------E-LIKG-- 59 (159)
T ss_dssp ------------------------------------------------CHHHHHHTTTCT------------T-CCCS--
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc---C--------CCCHHHHHHHHHHccCC------------C-cCCC--
Confidence 789999999999999999997 899999987 2 39999999999977531 0 0122
Q ss_pred ceeEeechHHHHHHHHHHHhccc
Q 000139 1739 KALLKVTEDNVRTLLNVAAEQED 1761 (2062)
Q Consensus 1739 ~~~~~~~~~~~~~~~~~~~~~~~ 1761 (2062)
.-|++.-..|+..+...+.
T Consensus 60 ----~Wt~eEd~~L~~~v~~~g~ 78 (159)
T 1h89_C 60 ----PWTKEEDQRVIKLVQKYGP 78 (159)
T ss_dssp ----CCCHHHHHHHHHHHHHHCS
T ss_pred ----CCChHHHHHHHHHHHHhCc
Confidence 5788888999999887764
No 126
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.61 E-value=1.5e-05 Score=83.68 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=44.1
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
..++||++||++|..+|.+||++|..||..| -.|++.+|+.||..++.+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-----------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-----------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-----------TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHC-----------CCCCHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999976 339999999999988754
No 127
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.57 E-value=6.4e-05 Score=74.67 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=47.7
Q ss_pred CCCCCChhhhHHHHHHHHhcC---C-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHH-HhCCCCCcc
Q 000139 1659 SPDVWLPQEDAILCAVVHEYG---P-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI-LSVPDNSIN 1729 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g---~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~-~~~~~~~~~ 1729 (2062)
..++||++||.+|...|..|| + +|..|+..| + .|++++|++||..|++... .++...+.+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v---p--------GRT~~q~k~ry~~l~~dv~~iesg~vp~P 71 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV---E--------GRTPEEVKKHYEILVEDIKYIESGKVPFP 71 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS---T--------TCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc---C--------CCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 478999999999999999998 5 499999988 2 3999999999999998753 344444443
No 128
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.23 E-value=0.00018 Score=65.82 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=43.5
Q ss_pred CCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
...+|+++||..|...|.+||.+|..|+..- + ++ ..|+.+.=+.||++|+.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y---~---f~--~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSF---P---FQ--KGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHS---C---CC--TTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhC---C---Cc--cCcccchHHHHHHHHHhc
Confidence 3689999999999999999999999999532 1 11 459999999999999753
No 129
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00032 Score=64.46 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=43.2
Q ss_pred CccccCCCCCCCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHH
Q 000139 1650 NVWSRDCVPSPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRE 1714 (2062)
Q Consensus 1650 ~~~~~~~~~~~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~ 1714 (2062)
....|+. .++||++|+.+++..++.||.+|..|+..| ..|++.+|..+|-.
T Consensus 5 ~~~~r~~---~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l-----------~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 5 SSGDRQF---MNVWTDHEKEIFKDKFIQHPKNFGLIASYL-----------ERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCCCSC---CCSCCHHHHHHHHHHHHHSTTCHHHHHHHC-----------TTSCHHHHHHHHHH
T ss_pred ccccccc---CCCCCHHHHHHHHHHHHHhCCCHHHHHHHc-----------CCCCHHHHHHHHHH
Confidence 3344544 689999999999999999999999999877 34999999999853
No 130
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.81 E-value=0.00031 Score=79.62 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCCCCChhhhHHHHHHHHhcCCC------chhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGPN------WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~n------w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
..++||++||++|..+|..||.. |..||-.| -.|.+.+||.||+.++.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-----------pGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-----------PNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-----------TTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-----------CCCCHHHHHHHHHHHHhhh
Confidence 37899999999999999999985 99999877 3499999999999999875
No 131
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.77 E-value=0.0051 Score=80.76 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=95.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHCCC
Q 000139 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWCPA 599 (2062)
Q Consensus 521 Lk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw~P~ 599 (2062)
+...|-+.|+.+|...+. .+.-.|+.-..|.|||.+.+.+|.++... + .++||++|++. +.+-...|....
T Consensus 186 ~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~--~~ILv~a~TN~AvD~i~erL~~~~-- 257 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ-G--LKVLCCAPSNIAVDNLVERLALCK-- 257 (646)
T ss_dssp SSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT-T--CCEEEEESSHHHHHHHHHHHHHTT--
T ss_pred cCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC-C--CeEEEEcCchHHHHHHHHHHHhcC--
Confidence 456799999999988765 23346788889999999999998888753 3 48999999964 555666666543
Q ss_pred CeEEEEeCChhh-------------------------HHhhhhccCC---------------------------------
Q 000139 600 FKILTYFGSAKE-------------------------RKFKRQGWLK--------------------------------- 621 (2062)
Q Consensus 600 lkVl~y~Gs~ke-------------------------rk~~r~gw~k--------------------------------- 621 (2062)
.+++.+....+. ++.....+..
T Consensus 258 ~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 258 QRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp CCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344332211110 0000000000
Q ss_pred --CCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCC
Q 000139 622 --PNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 622 --~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
....+|+++|........ ..+....|++||||||-.+.-+. ++.-+....+++|-|=|-|
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~-----~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEAS-----CWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHH-----HTTTGGGSSEEEEEECTTS
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHH-----HHhhccccceEEEcCCccc
Confidence 012357777765554432 34566789999999997664322 3333444567889999988
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.61 E-value=0.012 Score=74.16 Aligned_cols=143 Identities=15% Similarity=0.060 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lk 601 (2062)
..|-+-|+.++..++.....+. ..+|--..|.|||..+.+++.++.... . ..+++++|+.....=..+.. +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~-~-~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG-E-TGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT-C-CCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-C-ceEEEecCcHHHHHHHHhhh----ccc
Confidence 4699999999998876554444 667888899999998888888886642 2 47899999976543222211 122
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEe
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLT 681 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLT 681 (2062)
+.++|.- .............+... ..-...++++|||||+|.+.. ......+..+....++++.
T Consensus 98 ~~T~h~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~v 161 (459)
T 3upu_A 98 ASTIHSI------LKINPVTYEENVLFEQK--------EVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIGI 161 (459)
T ss_dssp EEEHHHH------HTEEEEECSSCEEEEEC--------SCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEEE
T ss_pred hhhHHHH------hccCcccccccchhccc--------ccccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEEE
Confidence 2222210 00000000000011000 011223579999999998842 2233333444567899999
Q ss_pred ccCCCC
Q 000139 682 GTPLQN 687 (2062)
Q Consensus 682 GTPLQN 687 (2062)
|-|-|.
T Consensus 162 GD~~Ql 167 (459)
T 3upu_A 162 GDNKQI 167 (459)
T ss_dssp ECTTSC
T ss_pred CCHHHc
Confidence 999883
No 133
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.47 E-value=0.0027 Score=60.24 Aligned_cols=48 Identities=17% Similarity=0.411 Sum_probs=42.6
Q ss_pred CCCCCChhhhHHHHHHHHhcC---CC-chhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYG---PN-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g---~n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
..++||.+||.+|...|..|+ |+ |+.|+..| | |++++|+.||+.|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l----------g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL----------G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH----------T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh----------C--CCHHHHHHHHHHHHHh
Confidence 367899999999999999998 44 99999976 1 8999999999999876
No 134
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.38 E-value=0.037 Score=72.43 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=92.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-HHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-LNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL-~QW~~Efkkw~P~lk 601 (2062)
..|.+.|..++..++. +...++.-..|.|||.++..++.++... ...++||++|+... .+-...+.+. +++
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCe
Confidence 4689999999987653 3456778889999999988888877542 23589999999754 4444445443 344
Q ss_pred EEEEeCChhhH-----------Hhhh-----------hccC------------------------CCCCceEEEEehhhh
Q 000139 602 ILTYFGSAKER-----------KFKR-----------QGWL------------------------KPNSFHVCITTYRLI 635 (2062)
Q Consensus 602 Vl~y~Gs~ker-----------k~~r-----------~gw~------------------------k~~~fdVVITSYe~l 635 (2062)
++.+.+..+.. ...+ ..+. -....+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 44332221100 0000 0000 012356888887665
Q ss_pred hhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCC
Q 000139 636 IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 636 ~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
.. ..+....|++||||||..+-.+. .+ +.-+....+++|.|=|-|
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~--~l--i~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPE--CM--VPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHH--HH--HHHTTTBSEEEEEECTTS
T ss_pred cc--hhhhcCCCCEEEEecccccCcHH--HH--HHHHhcCCeEEEecChhc
Confidence 42 23566789999999997765443 11 112234568999999988
No 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.06 E-value=0.017 Score=74.85 Aligned_cols=132 Identities=21% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCe
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lk 601 (2062)
...|-+.|+.++..+.. +...+|.-..|.|||.++.+++..+.. .+ .++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g--~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES-LG--LEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH-TT--CCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh-cC--CeEEEecCcHHHHHHhHhhhc----cc
Confidence 56789999999988763 456788889999999888777766644 33 589999999877665554211 11
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEe
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLT 681 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLT 681 (2062)
..+++. . .++.. . . +... .-....+++|||||||.+.. ......+..+....+++|.
T Consensus 256 a~Tih~------l--l~~~~-~-------~---~~~~--~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTVHR------L--LGYGP-Q-------G---FRHN--HLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEHHH------H--TTEET-T-------E---ESCS--SSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHHHH------H--HcCCc-c-------h---hhhh--hcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 111110 0 00000 0 0 0000 11224689999999999853 2333445556777899999
Q ss_pred ccCCCC
Q 000139 682 GTPLQN 687 (2062)
Q Consensus 682 GTPLQN 687 (2062)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999984
No 136
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.043 Score=73.75 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH-HHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM-LNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL-~QW~~Efkkw~P~lk 601 (2062)
..|.+.|..++..++. +...++--..|.|||.++..++.++....+ .++||++|+... .+-...+.+. +++
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~~--~~ILv~a~tn~A~d~l~~rL~~~--g~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIHK--DRILVCAPSNVAVDHLAAKLRDL--GLK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHT--TCC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCCC--CeEEEEcCcHHHHHHHHHHHHhh--Ccc
Confidence 4689999999987653 334577788999999998888887765322 589999999754 4445556554 344
Q ss_pred EEEEeCChhhH-----------Hhh----------------hhcc------------------CCCCCceEEEEehhhhh
Q 000139 602 ILTYFGSAKER-----------KFK----------------RQGW------------------LKPNSFHVCITTYRLII 636 (2062)
Q Consensus 602 Vl~y~Gs~ker-----------k~~----------------r~gw------------------~k~~~fdVVITSYe~l~ 636 (2062)
++.+.+..... ... ..+- ......+|+++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 44332211100 000 0000 00124578888877665
Q ss_pred hchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCC
Q 000139 637 QDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 637 ~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
. ..+.. .|++||||||+.+.... . .+..+....+++|-|=|-|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~--~--li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE--C--LIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH--H--HHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH--H--HHHHHhCCCEEEEEeCccc
Confidence 2 22444 89999999999875432 1 2222334578999999988
No 137
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.72 E-value=0.058 Score=66.57 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=91.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHHC---C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKWC---P 598 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw~---P 598 (2062)
..|.|||+..+..|.. ....++.---+.|||..+.+++.+.+... ....+++++|+.- ...+...+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 5789999998876631 23466777799999998877777655532 2246888889842 333445665553 4
Q ss_pred C-CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-cc--C
Q 000139 599 A-FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FN--S 674 (2062)
Q Consensus 599 ~-lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~--a 674 (2062)
. ++......+. . ...+ ..+..-.++++ +...++.....++|+||+|.+++. ...+.++.. +. .
T Consensus 237 ~ll~~~~~~~~~-~----~I~f-~nGs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNK-G----SIEL-DNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECS-S----EEEE-TTSCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCc-c----EEEe-CCCCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 2110000000 0 0011 11222222222 445677788899999999999873 244444432 22 3
Q ss_pred ceEEEEeccCCCCChHHHHHHHHH
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHF 698 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~F 698 (2062)
..++++++||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 57899999996553 45554443
No 138
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.69 E-value=0.067 Score=71.90 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH-HHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML-NWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~-QW~~Efkkw~P~lk 601 (2062)
..|-+.|..++..++. +...++.-..|.|||.+...++.++... ...++||++|+.... +-...+... +++
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 4689999999987653 3446788889999999988888877642 235899999997544 344444442 344
Q ss_pred EEEEeCChhhH------------------------Hhh---h-hccC------------------CCCCceEEEEehhhh
Q 000139 602 ILTYFGSAKER------------------------KFK---R-QGWL------------------KPNSFHVCITTYRLI 635 (2062)
Q Consensus 602 Vl~y~Gs~ker------------------------k~~---r-~gw~------------------k~~~fdVVITSYe~l 635 (2062)
++.+.+..+.. +.. . .+-. -....+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 44332211100 000 0 0000 002346888887665
Q ss_pred hhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCC
Q 000139 636 IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 636 ~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
.. ..+....|++||||||..+-.+. . .+..+....+++|.|=|.|
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~--~--li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE--C--MVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH--H--HHHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH--H--HHHHHhcCCeEEEeccccc
Confidence 43 23556789999999997765432 1 1222344578999999988
No 139
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.51 E-value=0.054 Score=70.40 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC---
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC--- 597 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~--- 597 (2062)
...|.|||+..+..|. . ....++.---|.|||..+.+++.+.+...+ ...+++|.|+. ........++.++
T Consensus 161 ~~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3579999999887662 2 344666668999999988777766655432 23788888984 3333445666664
Q ss_pred CC-CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-c--
Q 000139 598 PA-FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-N-- 673 (2062)
Q Consensus 598 P~-lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~-- 673 (2062)
|. ++......+.. ...+ .++..+... ..+...++....+++|+||+|.+++.. ..+.++... .
T Consensus 236 p~~~~~~~~~~~~~-----~i~~--~nGs~i~~~-----s~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG-----SIEL--DNGSSIGAY-----ASSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp CTTTSCCEEEECSS-----EEEE--TTSCEEEEE-----ECCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred hHhhccccccCCcc-----EEEe--cCCCEEEEE-----eCCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 32 11100000000 0001 122222222 123455667788999999999998743 555555432 2
Q ss_pred CceEEEEeccCCCC
Q 000139 674 SKRRILLTGTPLQN 687 (2062)
Q Consensus 674 a~~RLLLTGTPLQN 687 (2062)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34789999999655
No 140
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.02 E-value=0.016 Score=52.99 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCCChhhhHHHHHHHHhc--------CC-CchhHHH-HhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEY--------GP-NWSLVSD-ILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~--------g~-nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
..+||++||++||.+|.+| |. .|.-+++ .+ .-|+-.+||+||+..+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-----------~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-----------TQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-----------SSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-----------CCCCHHHHHHHHHHHc
Confidence 4689999999999999999 33 3999888 44 3488899999998754
No 141
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.84 E-value=0.07 Score=69.59 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc-CCCCcEEEEecCCcHHHH-HHHHHHHCCCCeEE
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-GIWGPHLIVVPTSVMLNW-ETEFLKWCPAFKIL 603 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~-g~~Gp~LIVvPtSLL~QW-~~Efkkw~P~lkVl 603 (2062)
-+.|+.++.-++. +...|+.-..|.|||.++..++..+.... +...++++++|+.....- ...+..++..+.+-
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4789999876653 55678889999999988777777665421 222378999999755443 33333321111000
Q ss_pred EEeCChhhHHhhhhccCCCCCceEEE-Eehh--hhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEE
Q 000139 604 TYFGSAKERKFKRQGWLKPNSFHVCI-TTYR--LIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL 680 (2062)
Q Consensus 604 ~y~Gs~kerk~~r~gw~k~~~fdVVI-TSYe--~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLL 680 (2062)
. ..+.... ......|-++ ++.. .+... ......+++||||||+.+. .......+..+....+++|
T Consensus 227 ---~--~~~~~~~---~~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 227 ---D--EQKKRIP---EDASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp ---S--CCCCSCS---CCCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEE
T ss_pred ---H--HHHhccc---hhhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEE
Confidence 0 0000000 0000000000 0000 01000 1122368999999999885 2334455666777889999
Q ss_pred eccCCCCC
Q 000139 681 TGTPLQND 688 (2062)
Q Consensus 681 TGTPLQNs 688 (2062)
.|-|-|-.
T Consensus 295 vGD~~QL~ 302 (608)
T 1w36_D 295 LGDRDQLA 302 (608)
T ss_dssp EECTTSGG
T ss_pred EcchhhcC
Confidence 99998843
No 142
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.19 E-value=0.077 Score=58.70 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
.++.-.||.|||..++.++..+.. .+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~-~g--~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL-GK--KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TT--CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEeec
Confidence 467778999999888777665543 22 468888887
No 143
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.13 E-value=0.022 Score=54.11 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=39.7
Q ss_pred CCCCCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1657 VPSPDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1657 ~~~~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
|+..++||.+|+.+|..-+..|+. +|..|+..+ + .|+..+|+.||..|.+
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V---~--------gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAV---G--------SRSPEECQRKYMENPR 58 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT---T--------TSCHHHHHHHHHHSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc---C--------CCCHHHHHHHHHHHHh
Confidence 445789999999887665656663 599999987 2 2999999999999843
No 144
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.74 E-value=0.13 Score=66.06 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lk 601 (2062)
+.+||||...+.-+......+.++|+-..+|.|||+..+.-+ +.. .+++||++|+ .+..||..++.+. +++
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~~~----~~~~~~~~~t~~l~~q~~~~~~~l--~~~ 77 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--MQL----KKKVLIFTRTHSQLDSIYKNAKLL--GLK 77 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--HHH----TCEEEEEESCHHHHHHHHHHHGGG--TCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--HhC----CCcEEEEcCCHHHHHHHHHHHHhc--CCc
Confidence 478999999988777666778889999999999997554332 221 2589999998 5788899999885 345
Q ss_pred EEEEeCChhh--------H--------------------HhhhhccCC----------------CCCceEEEEehhhhhh
Q 000139 602 ILTYFGSAKE--------R--------------------KFKRQGWLK----------------PNSFHVCITTYRLIIQ 637 (2062)
Q Consensus 602 Vl~y~Gs~ke--------r--------------------k~~r~gw~k----------------~~~fdVVITSYe~l~~ 637 (2062)
+.+..|...- . ......|.. ....+|||++|..+..
T Consensus 78 ~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~ 157 (540)
T 2vl7_A 78 TGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQ 157 (540)
T ss_dssp EEEC---------------------------------------------------------CTTGGGCSEEEEETHHHHS
T ss_pred EEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcC
Confidence 5544443210 0 000000110 1345899999999987
Q ss_pred chh--hhh-------ccCeeEEEEcCccccC
Q 000139 638 DSK--VFK-------RKKWKYLILDEAHLIK 659 (2062)
Q Consensus 638 d~~--~L~-------r~~W~lVILDEAH~IK 659 (2062)
+.. .+. .....+|||||||++-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 158 KPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 632 222 2356899999999993
No 145
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.66 E-value=0.32 Score=63.37 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcH-HHHHHHHHHHC---
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVM-LNWETEFLKWC--- 597 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtSLL-~QW~~Efkkw~--- 597 (2062)
..|-+.|..+|. .. ....++---.|.|||.+.+.-++++....+. ...+|+|+++... .+-...+.+.+
T Consensus 8 ~~Ln~~Q~~av~-----~~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVA-----AP-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHT-----CC-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHh-----CC-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 458999999995 12 3344555569999999999999998875443 3579999998654 44455565553
Q ss_pred -CCCeEEEEeC
Q 000139 598 -PAFKILTYFG 607 (2062)
Q Consensus 598 -P~lkVl~y~G 607 (2062)
..+.+.++|+
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2345555554
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.14 E-value=0.23 Score=56.87 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
..+.-.++.-+||.|||..++.++..+.. .+ .+++|+.|.-
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g--~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-AD--VKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TT--CCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cC--CEEEEEEecc
Confidence 33334467889999999988888776644 22 3677777653
No 147
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=92.94 E-value=0.042 Score=62.04 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=40.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
.++||++|+.++...+..||-+|..|+..| -.|+..+|+..|-..
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~V-----------gTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-----------GNKSVVQVKNFFVNY 177 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHH-----------SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-----------CCCCHHHHHHHHHHH
Confidence 689999999999999999999999999988 339999999887543
No 148
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.82 E-value=0.048 Score=53.26 Aligned_cols=59 Identities=19% Similarity=0.467 Sum_probs=47.4
Q ss_pred CCCCChhhhHHHHHHHHhcC-------C---CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYG-------P---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPD 1725 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g-------~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~ 1725 (2062)
...|+..|=.+|..+..++- + .|..||+.| .. .|..|+|.||+.+|++|...|-..-..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m---~~----~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKM---RE----KGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH---HH----HHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH---HH----cCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999988886632 2 599999998 32 456799999999999999999765543
No 149
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=92.02 E-value=0.14 Score=50.72 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=48.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSV 1723 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~ 1723 (2062)
+++||.+|+..|-.|+++||..|-+|+|-+. . ..+ .-|+-..=++||-.+..+....-
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~---~-~~~--~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYD---H-QQF--KKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSC---T-TTS--CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhc---c-CCC--CCCCHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999772 1 111 24999999999999888776554
No 150
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.68 E-value=0.42 Score=63.00 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAF 600 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~g-GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~l 600 (2062)
..++.||..++.-|+.....+.. ..|.--+|.|||+.+..++..+ .+|+|||+|.. ...+|..+|+.|+|..
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 56788999999977776665543 4566779999999887776543 24899999985 6788999999999877
Q ss_pred eEEEE
Q 000139 601 KILTY 605 (2062)
Q Consensus 601 kVl~y 605 (2062)
.|..|
T Consensus 85 ~v~~f 89 (661)
T 2d7d_A 85 AVEYF 89 (661)
T ss_dssp EEEEE
T ss_pred cEEEc
Confidence 66655
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.38 E-value=0.29 Score=64.45 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=59.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAF 600 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~g-GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~l 600 (2062)
..+.++|..++.-|+.....+.. .+|.--+|.|||+++..++..+ .+|+|||+|.. +..||..+|+.|+|..
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~ 80 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPEN 80 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCC
Confidence 46889999999877766655542 4566779999999887777554 24899999985 6788999999999876
Q ss_pred eEEEE
Q 000139 601 KILTY 605 (2062)
Q Consensus 601 kVl~y 605 (2062)
.|..|
T Consensus 81 ~V~~f 85 (664)
T 1c4o_A 81 AVEYF 85 (664)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 55544
No 152
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.17 E-value=1 Score=51.20 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++.-.||.|||..+|.++..+.. .+ .++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~-~g--~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF-AK--QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH-TT--CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-CC--CEEEEEEecc
Confidence 46888999999888887665543 22 4788888864
No 153
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.16 E-value=0.31 Score=61.06 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=66.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNS 624 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~ 624 (2062)
.++.--.|.|||...+.++. ..+.|||+|+. +...|.+.+.+- |. .....
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-----------~~~~~ 214 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-----------IVATK 214 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-----------CCCCT
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-----------ccccc
Confidence 35677899999976655442 14789999995 566688876431 00 00011
Q ss_pred ceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCC
Q 000139 625 FHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 625 fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
+-+.|++.+......+.....++||||||..+-. ....++..+....+++|.|=|-|
T Consensus 215 --~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~---~~l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 215 --DNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHT---GCVNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp --TTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCH---HHHHHHHHHTTCSEEEEEECTTS
T ss_pred --ceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCH---HHHHHHHHhCCCCEEEEecCccc
Confidence 2256666665443333334589999999998732 23333333333389999999988
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.95 E-value=0.44 Score=53.20 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
.++.-.||.|||..++.++..+.. .+ .+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~-~g--~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI-AK--QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-CC--CEEEEEEec
Confidence 356788999999888877665542 33 478888887
No 155
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.93 E-value=2.1 Score=51.37 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHHHHhhcCC---cEEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 525 LREYQHIGLDWLVTMYEKRL---NGILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~---gGILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
++|+|...+..|...+.++. ..+|.-+.|.|||..+.++...+.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 57899999988887776544 357889999999999999988887643
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.62 E-value=1.1 Score=52.64 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=25.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEec
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVP 582 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvP 582 (2062)
+.+|.-+.|.|||..+-++...+...... .++++.|.+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 46889999999999988877776543222 235444443
No 157
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.34 E-value=2.2 Score=50.53 Aligned_cols=36 Identities=14% Similarity=-0.062 Sum_probs=25.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 582 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP 582 (2062)
.+.+|.-+.|+|||..+-++...+... ..+++.|-.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH
Confidence 467889999999998887777666543 235555543
No 158
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=83.50 E-value=2.8 Score=48.24 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=24.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++.-.||.|||..+|..+.... +...+++|+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 5678899999987777655443 3335788888763
No 159
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.86 E-value=1.5 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+.+|.-+.|.|||..+-++...+.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788999999999988887777654
No 160
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.46 E-value=2.9 Score=49.47 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=26.4
Q ss_pred CeeEEEEcCccccC-C-hhhHHHHHHHcccCceEEEEeccCCC
Q 000139 646 KWKYLILDEAHLIK-N-WKSQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 646 ~W~lVILDEAH~IK-N-~~Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
...+|||||+|.+. . ......+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999995 2 12223333444455678888877654
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.42 E-value=4.6 Score=42.75 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
..+.+|.-+.|.|||..+-++...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445688999999999988877766543
No 162
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.28 E-value=4.5 Score=44.28 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
++..+..+...+..-......+|.-+.|.|||..+-++...+.+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 55565555544432222234678999999999888777665543
No 163
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=81.63 E-value=3.6 Score=53.76 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec--ccccc
Q 000139 1070 ELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST--RSGGV 1146 (2062)
Q Consensus 1070 ~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST--rAGG~ 1146 (2062)
.+...|..+. ..+.++|||...-.+++.+...|. .+.+- ...+++...|..++++|. + .--| |+++ .+.++
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~v-L~~v~~gsf~E 508 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-DHGT-IFAVSGGRLSE 508 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCE-EEEETTSCC--
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-CCcE-EEEEecCceec
Confidence 3444444442 234568888777777777776665 23333 444444568999999998 3 3334 4554 48899
Q ss_pred ccCccc--CCEEEEecCCC
Q 000139 1147 GINLVG--ADTVIFYDSDW 1163 (2062)
Q Consensus 1147 GLNLT~--ADtVIfyD~dW 1163 (2062)
|||+.+ +..||+.-.|+
T Consensus 509 GiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 509 GINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ------CCCCEEEESSCCC
T ss_pred cccCCCCceEEEEEEcCCC
Confidence 999987 77888876654
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.53 E-value=1.4 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
...+.+|.-+.|.|||..+-++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456788999999999887666443
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.94 E-value=3.4 Score=49.67 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHH-hhc--CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTM-YEK--RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l-~~~--~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
|+.++..+.-++.. ... ..+.+|.-+.|.|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67777766533333 222 334678999999999988877776654
No 166
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=80.38 E-value=2.6 Score=41.30 Aligned_cols=54 Identities=28% Similarity=0.550 Sum_probs=46.8
Q ss_pred CCCCChhhhHHHHHHHHhcCC---CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVP 1724 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~ 1724 (2062)
--.|+-++|..|..--.+-|+ .|.-||-.| .-|.|.+-++||+.||.=+.....
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-----------~Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQL-----------GNKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHH-----------ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999 799999999 349999999999999987765543
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.30 E-value=4.6 Score=44.72 Aligned_cols=40 Identities=15% Similarity=-0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 530 HIGLDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 530 ~~GL~WLv~l~~--~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...+.++..... .+.+.+|.-+.|.|||..+-++...+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444444433 3456688999999999988777666544
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.26 E-value=8.3 Score=41.46 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHHHHHHHHHHHhcC
Q 000139 526 REYQHIGLDWLVTMYE-----KRLNGILADEMGLGKTIMTIAMLAHLACEKG 572 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~-----~~~gGILADEMGLGKTIQaIALLa~L~~~~g 572 (2062)
.+.|...+..+..... .+.+.+|.-..|.|||..+-+++..+....|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678888888776543 3455678889999999988777766653433
No 169
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.01 E-value=13 Score=40.25 Aligned_cols=43 Identities=21% Similarity=0.120 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+......+...+... ...+.+|.-+.|.|||..+-++...+..
T Consensus 22 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 22 QDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444444444333321 1234788999999999888777666543
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.90 E-value=15 Score=38.70 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
..+.+|.-+.|.|||..+-+++..+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346788999999999988887776654
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.02 E-value=2.3 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~ 566 (2062)
.|.+|.-+.|.|||..+-++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45688999999999988776554
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=77.95 E-value=6.5 Score=45.93 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
++.....+..++..- ...+.+|.-+.|.|||..+-++...+.+
T Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 455555544333321 1224788999999999988877776643
No 173
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.87 E-value=5 Score=49.07 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
..+.+|.-+.|.|||..+-++...+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3567889999999998887664332 2366666665555443
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.42 E-value=3.9 Score=42.79 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=21.7
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHH
Q 000139 535 WLVTMYEKRLNGILADEMGLGKTIMTIAML 564 (2062)
Q Consensus 535 WLv~l~~~~~gGILADEMGLGKTIQaIALL 564 (2062)
.+......+.+.+|.-+.|.|||..+-++.
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 333334566788999999999998776543
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.18 E-value=4.4 Score=48.42 Aligned_cols=44 Identities=30% Similarity=0.277 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHh---hcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMY---EKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~---~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
|+.+...+.-++... ....+.+|.-+.|.|||..+-+++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 666666655333222 23456788999999999988777776644
No 176
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.16 E-value=1.6 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L 567 (2062)
.++.-.+|.|||..++.++...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4677889999999988776544
No 177
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=74.32 E-value=8 Score=43.38 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
++.-.||+|||...|-.+..... .+ .+++++-|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~~--~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-AQ--YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-TT--CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-cC--CeEEEEccc
Confidence 56888999999766665555433 22 467888776
No 178
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.07 E-value=2.8 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L 567 (2062)
.+.+|.-+.|.|||..+-++...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 467889999999999887776654
No 179
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.75 E-value=9.9 Score=43.51 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHH
Q 000139 535 WLVTMYEKRLNGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 535 WLv~l~~~~~gGILADEMGLGKTIQaIALLa 565 (2062)
.+......+.+.+|.-+.|.|||..+-++..
T Consensus 21 ~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 21 QVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp HHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3333344567788999999999977655543
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.12 E-value=6.5 Score=48.78 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
..|.+|.-..|.|||+.|=|+...+. -|++.|....++..|.-|
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCSSTTH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhccccch
Confidence 56788999999999998877766542 267777777777666443
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.06 E-value=8.4 Score=43.61 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=24.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
.+.+|.-+.|.|||..+-++...+ + .+++.|....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~----~--~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA----Q--VPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH----T--CCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----C--CCEEEechHHH
Confidence 456789999999998887765543 1 25555544443
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.64 E-value=5.2 Score=47.96 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHhhcCC----cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEec
Q 000139 526 REYQHIGLDWLVTMYEKRL----NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVP 582 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~----gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvP 582 (2062)
++.++..+.++......+. +.+|.-+.|.|||..+-++...+.+ ..|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccccc
Confidence 6777777777776665433 5688999999999988887766532 235555543
No 183
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=72.54 E-value=18 Score=41.35 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=23.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
++.-.||.|||...|..+..+. ..+ .+++|+-|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~-~~g--~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGI-YAK--QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH-HTT--CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HcC--CceEEEEecc
Confidence 5678899999977776654443 233 4678888864
No 184
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=71.94 E-value=2.7 Score=41.79 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=37.7
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERF 1712 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~ 1712 (2062)
.+.||++|-.+.+.-...||-||.+|+..| ..|+..+|-+=|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l-----------~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFL-----------ERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTC-----------TTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHc-----------CCCCHHHHHHHH
Confidence 689999999999999999999999999987 559999998655
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.13 E-value=14 Score=46.10 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+.+|.-+.|+|||..+-++...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45688999999999888777666544
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.76 E-value=8.1 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+.+|.-+.|.|||..+-++...+.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3788999999999988887776654
No 187
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=70.70 E-value=21 Score=42.44 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
++.....+...+..-......+|.-+.|.|||..+-++...+.+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55555555444332121223578999999999988777766644
No 188
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=70.57 E-value=12 Score=43.40 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
..+.+|.-+.|.|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999998887665554
No 189
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=69.36 E-value=3 Score=52.46 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=44.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHH---------HHHHHHHHHhCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERF---------RELIQRYILSVPD 1725 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~---------~~~~~~~~~~~~~ 1725 (2062)
...||.+|=.++...+..||-||..|+++| .-|++.||+.-| ..+++.|..+...
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~V-----------gTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~~~~ 443 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-----------GNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGK 443 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHH-----------SSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHh-----------CCCCHHHHHHHHHHHHHHhChHHHHHHHHHhhCC
Confidence 689999999999999999999999999998 348999998765 3567777555443
No 190
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=71.22 E-value=1.1 Score=41.81 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=43.0
Q ss_pred CCCCChhhhHHHHHHHHhcCC---CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP---NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~---nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
--.|+-+||.+|..-..+-|+ -|.-+|-.| -|+|.+-.+||+.||.=..-
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L------------nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL------------DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 357999999999999999999 699999766 29999999999999875543
No 191
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=67.63 E-value=4.7 Score=37.92 Aligned_cols=43 Identities=14% Similarity=0.400 Sum_probs=37.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHH-HhhccccCccccccccCChhhHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSD-ILYGMTASGYYRGRYRHPVHCCERFR 1713 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~~ 1713 (2062)
.+.||++|=.+...=+..||.||.+|+. +| ..|++.+|..=|-
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-----------~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFL-----------PWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTC-----------SSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHc-----------CCCCHHHHHHHHH
Confidence 6899999999999999999999999998 56 3488889986653
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.27 E-value=5.5 Score=47.59 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=24.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM 586 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL 586 (2062)
.|.+|.-+.|.|||..+-++...+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 456889999999998887766543 12345555444443
No 193
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=66.94 E-value=10 Score=47.43 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+++.+...+..+.-.+|+-..|.|||..++.++...+...+ .|++++..-.-..++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHH
Confidence 46666644555556789999999999999888887765322 4888887765555555443
No 194
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=66.81 E-value=17 Score=43.32 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHH
Q 000139 529 QHIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--gGILADEMGLGKTIQaIALLa 565 (2062)
|...+..|.....++. ..||.-+.|.|||-.+.++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455555655554443 458899999999987776654
No 195
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=66.79 E-value=34 Score=40.83 Aligned_cols=42 Identities=26% Similarity=0.224 Sum_probs=27.1
Q ss_pred cHHHHHHHH-HHHHHhh--cCC--cEEEEcCCCChHHHHHHHHHHHH
Q 000139 526 REYQHIGLD-WLVTMYE--KRL--NGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 526 RpYQ~~GL~-WLv~l~~--~~~--gGILADEMGLGKTIQaIALLa~L 567 (2062)
|+.+...+. |+..... .+. +.+|.-+.|.|||..+-+++..+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 666666655 3333222 223 56789999999998887666554
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.97 E-value=10 Score=47.45 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=23.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML 587 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~ 587 (2062)
.+.+|.-+.|.|||..+-++...+ ...+++.|....++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 206 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHh
Confidence 466889999999998887765543 123555555554443
No 197
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.88 E-value=24 Score=40.49 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~ 566 (2062)
+.+|.-+.|.|||..+-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999888776554
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=64.33 E-value=8.8 Score=45.21 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
.+.+.+|.-+.|.|||..+-++...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456788999999999887766544
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=63.15 E-value=3.5 Score=43.09 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAM 563 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIAL 563 (2062)
....+.+|.-+.|.|||..+-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667899999999999766443
No 200
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.16 E-value=18 Score=47.07 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc-----------CCCCcEEEEecCCcHHH
Q 000139 536 LVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEK-----------GIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 536 Lv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~-----------g~~Gp~LIVvPtSLL~Q 588 (2062)
+......+...+|.-+.|.|||..+-++...+.... ....|.+.+||.....+
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 333344567889999999999987766554432211 01246677777766444
No 201
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.13 E-value=6.1 Score=36.38 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=36.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHH-HhhccccCccccccccCChhhHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSD-ILYGMTASGYYRGRYRHPVHCCERF 1712 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~ 1712 (2062)
...||++|=.+...=+..||-||..|+- +| ..|...+|..=|
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v-----------~~Kt~~~~v~fY 51 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELL-----------PNKETGELITFY 51 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSC-----------TTSCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCccHHHHHHHHc-----------CCCcHHHHHHHH
Confidence 6899999999999999999999999997 56 448888887544
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.99 E-value=12 Score=44.67 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHh---hcCCcEEEEcCCCChHHHHHHHHHHHHHHh
Q 000139 526 REYQHIGLDWLVTMY---EKRLNGILADEMGLGKTIMTIAMLAHLACE 570 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~---~~~~gGILADEMGLGKTIQaIALLa~L~~~ 570 (2062)
|+.++..+.-.+... ..+.+.+|.-..|.|||..+-+++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 666666665333321 224456888999999998887777666543
No 203
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=61.74 E-value=9.3 Score=42.89 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=38.9
Q ss_pred CCCCChhhhHHHHHHHHhcC-CCchhHHHHh-hccccCcccc--ccccCChhhHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYG-PNWSLVSDIL-YGMTASGYYR--GRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g-~nw~l~~~~~-~~~~~~~~~~--~~~r~~~~c~~r~~~~~~~ 1718 (2062)
+..|+..||..|+.-||.|| ++|..|-+=. .++..=-+.. .+-+..+|..-|-..|+.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 35699999999999999999 8999887622 1222111111 2334556788886666653
No 204
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=61.47 E-value=54 Score=39.35 Aligned_cols=44 Identities=5% Similarity=-0.118 Sum_probs=31.1
Q ss_pred cHHHHHHHH-HHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLD-WLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~-WLv~l~~--~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
|+-|..-+. +|..... .+.+.+|.-.+|.|||.++-+++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 667777776 3444333 2334578899999999999888887754
No 205
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=60.39 E-value=9.5 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
..+.+|.-+.|.|||..+-++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456688999999999888766543
No 206
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=59.98 E-value=2.7 Score=39.86 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCccccccccCChhhHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFR 1713 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~ 1713 (2062)
+++||.+|+.+|-.-+--|+. .|..|+..| ++ |++..|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V---pG--------KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV---KG--------RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS---CS--------SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc---CC--------CCHHHHHHHHH
Confidence 678999999888877777875 499999977 22 89999998875
No 207
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=59.64 E-value=16 Score=45.70 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
+|+.+...+..+.-.+|+-..|.|||..++.++..+....| .+++++..-.-..++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHH
Confidence 56666654556666789999999999999888887765432 388888765444444433
No 208
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.50 E-value=23 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L 567 (2062)
.+.+|.-+.|.|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 466889999999998887765544
No 209
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.24 E-value=5.7 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
+.+|.-+.|.|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478899999999988887776664
No 210
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.29 E-value=31 Score=40.85 Aligned_cols=42 Identities=14% Similarity=0.359 Sum_probs=25.9
Q ss_pred cCeeEEEEcCccccCChh-hHHHHHHHcccCceEEEEeccCCC
Q 000139 645 KKWKYLILDEAHLIKNWK-SQRWQTLLNFNSKRRILLTGTPLQ 686 (2062)
Q Consensus 645 ~~W~lVILDEAH~IKN~~-Sk~~qaL~~L~a~~RLLLTGTPLQ 686 (2062)
.++.+|||||+|.+.... ....+.+.......+++++++-..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 368899999999964321 223444444455667777766443
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.89 E-value=14 Score=46.62 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~ 590 (2062)
...|.+|.-..|.|||+.|-|+...+.. +++.|....++..|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQKYV 284 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCCCSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhcccC
Confidence 3456788999999999988777665422 666676666665553
No 212
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=55.08 E-value=15 Score=48.17 Aligned_cols=68 Identities=18% Similarity=0.058 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHH-HHHHHHHHHC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVML-NWETEFLKWC 597 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL~-QW~~Efkkw~ 597 (2062)
.|-+-|+.+|.. .....++---.|.|||.+.+.-++++....+ ....+|+|+.+.... .-...+.+.+
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999863 2344556667999999999998988877644 345789999886544 4455566654
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.82 E-value=13 Score=46.48 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
..|.+|.-..|.|||..+-|+...+. -+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhccc
Confidence 45678899999999999887766542 266666666665544
No 214
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=53.88 E-value=12 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L 567 (2062)
.+.+|.-+.|.|||..+-++...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999887776655
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.41 E-value=56 Score=43.43 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...+.+|.-+.|.|||..+-++...+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999988877766644
No 216
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=53.13 E-value=42 Score=45.10 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
..|||--+....+......|.++||.+....... .+..++...|+++..+.|+++..+|..++..+.. +.+.|+|
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvV 476 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVI 476 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEE
Confidence 4689976665555444456889999998765544 3444444458999999999999999999988875 4566665
Q ss_pred EeccccccccCcccCCEEEEec
Q 000139 1139 LSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1139 LSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.+.......+++...+.||+=+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEES
T ss_pred ECHHHHhhhhhccCCceEEecc
Confidence 5554444456777777666644
No 217
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=53.03 E-value=37 Score=39.72 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAML 564 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALL 564 (2062)
|+.++.-+.-++. .+...+|.-..|.|||..+-.++
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 7777766654433 24566789999999996655544
No 218
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=52.52 E-value=10 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
..+.+|.-+.|.|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456688999999999887666543
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.38 E-value=44 Score=39.47 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
....+.+|.-+.|.|||..+-++.... ....+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCCC
Confidence 456678899999999998775554332 122356666644443
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.33 E-value=23 Score=41.21 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=23.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
+.+|.-+.|.|||..+-++...+.+ ..++++.|-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEee
Confidence 4688999999999888776665543 234555553
No 221
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.28 E-value=16 Score=43.46 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 530 HIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 530 ~~GL~WLv~l~~~~~--gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...+..|......+. +.+|.-+.|.|||..+-++...+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 334444433333333 2688899999999988887776643
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=50.00 E-value=22 Score=37.61 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
.+...+|.-..|.|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345567888999999988776665543
No 223
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.92 E-value=32 Score=41.53 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHH-HHh-h----cCCcEEE--EcCCCChHHHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLV-TMY-E----KRLNGIL--ADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 526 RpYQ~~GL~WLv-~l~-~----~~~gGIL--ADEMGLGKTIQaIALLa~L~~ 569 (2062)
|+.++..+.-++ ... . .....+| .-+.|.|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 666666665443 322 2 2234466 689999999888777766543
No 224
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=49.72 E-value=17 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa 565 (2062)
...+.+|.-+.|.|||..+-++..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 345678899999999988766643
No 225
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.66 E-value=59 Score=39.46 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=65.8
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEE
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFIL 1139 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLL 1139 (2062)
..+||--...-.+..+...|.++||.+.......-+...+.. .|+++..+.|+++..+|...+..+... ...|++.
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~ 123 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVF 123 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEE
Confidence 468998755444444446788999999998877776666665 688999999999998888888888753 3456566
Q ss_pred ecccccc---ccCcccCCEEEE
Q 000139 1140 STRSGGV---GINLVGADTVIF 1158 (2062)
Q Consensus 1140 STrAGG~---GLNLT~ADtVIf 1158 (2062)
+....-. -+++...+.||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 6543311 134455555554
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.17 E-value=1.3e+02 Score=32.38 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=62.1
Q ss_pred EcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe--cCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 549 ADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV--PTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 549 ADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv--PtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
.---|.|||..++.+...+.. .| .++|+|= |...+..|... ....++
T Consensus 8 s~kgG~GKTt~a~~la~~la~-~g--~~vlliD~D~~~~~~~~~~~----------------------------~~~~~~ 56 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSR-SG--YNIAVVDTDPQMSLTNWSKA----------------------------GKAAFD 56 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH-TT--CCEEEEECCTTCHHHHHHTT----------------------------SCCSSE
T ss_pred eCCCCccHHHHHHHHHHHHHH-CC--CeEEEEECCCCCCHHHHHhc----------------------------CCCCCc
Confidence 345689999999998888875 33 3677774 44555555431 011244
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHh
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL 699 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL 699 (2062)
++-.....+......+. ..+++||+|=.-.+ +. ....+.. .+.. +++-.+|-..+ ..+..++.++
T Consensus 57 ~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~-~~---~~~~~l~-~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 57 VFTAASEKDVYGIRKDL-ADYDFAIVDGAGSL-SV---ITSAAVM-VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EEECCSHHHHHTHHHHT-TTSSEEEEECCSSS-SH---HHHHHHH-HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHhc-CCCCEEEEECCCCC-CH---HHHHHHH-HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 44444344444444443 35899999976655 21 2122221 2444 34434555555 6666666665
No 227
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=47.75 E-value=21 Score=35.45 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHh
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1722 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1722 (2062)
.+.||-+|-..|-.|+++|+-.|-+|.|-... . ....|+...=++||-....+-...
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~---~---~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH---Q---QFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCT---T---TSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeecccc---C---CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999996511 0 113599999999999887775543
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=47.56 E-value=33 Score=43.44 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~ 566 (2062)
.|.+|.-++|.|||..+-++...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999887666543
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=47.47 E-value=1.4e+02 Score=32.56 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=30.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
..+...+|.-..|.|||..+..++..+... .++++++.......+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHH
Confidence 334445678889999998887777665543 246777765444443333
No 230
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.04 E-value=11 Score=47.08 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~ 590 (2062)
..|.+|.-..|.|||+.+-|+...+. -+++.|....++..|.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccc
Confidence 45778899999999999888766552 2666666666665543
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=46.68 E-value=31 Score=43.14 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
+++.+...+..+.-.||+-..|.|||..++.++.+.+.. ..++|++.----..++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKEN 240 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHH
Confidence 566666545556667999999999999999988887654 2488888754333333
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.65 E-value=21 Score=44.69 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
..|.+|.-..|.|||+.|-|+...+. -+++.|....++..|.-+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCch
Confidence 46778899999999998877766542 267777766666555433
No 233
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=46.60 E-value=47 Score=33.12 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1073 ILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1073 ~LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
..++++.. .++|+||+. +-..-.....+|..+|+.|..++=....+.++.+.+......-..|||
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 34444433 569999998 678888999999999999988776556666666655544333333443
No 234
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.40 E-value=22 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~ 566 (2062)
+.||.-+.|.|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999877555443
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.40 E-value=48 Score=36.15 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=33.4
Q ss_pred HHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC--cHHHHHH
Q 000139 532 GLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS--VMLNWET 591 (2062)
Q Consensus 532 GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS--LL~QW~~ 591 (2062)
+++.++. .+..+.-.+|+-..|.|||..+..++. . . .+++++|.-.. -...|..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~--~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S--GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H--CSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c--CCcEEEEECCCCCCHHHHHH
Confidence 5566653 334445567888999999988777665 1 2 24677776443 3444544
No 236
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.87 E-value=58 Score=32.76 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1074 LLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1074 LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
.++.+. ..++|+||+. +-..-.....+|..+|+.|..+|=....+-|+.+.+.-....-..|||
T Consensus 8 ~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 8 RLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 344433 3679999995 667788888999999999988876666666666655443322333444
No 237
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=42.71 E-value=42 Score=41.03 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=39.6
Q ss_pred HHHHHHH--HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 532 GLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 532 GL~WLv~--l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
+|+.++. -+..+...+|+-..|.|||..++.++...... .+++++|.......+|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH
Confidence 5676664 34445556788999999999999988877542 2478888776666665
No 238
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=42.56 E-value=79 Score=32.31 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=46.2
Q ss_pred HHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCc---EEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1074 LLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYT---YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1074 LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~---y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.++.+.. .++|+||+. +-..-.....+|+.+|+. |..++=....+-|+.+........-..|||=....|
T Consensus 8 ~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~iG 86 (121)
T 3gx8_A 8 AIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIG 86 (121)
T ss_dssp HHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTEEEE
T ss_pred HHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEe
Confidence 3444333 579999998 577888888999999998 877776666666666655544333334454333334
Q ss_pred c
Q 000139 1145 G 1145 (2062)
Q Consensus 1145 G 1145 (2062)
|
T Consensus 87 G 87 (121)
T 3gx8_A 87 G 87 (121)
T ss_dssp S
T ss_pred c
Confidence 3
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.23 E-value=54 Score=44.32 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
..+.+|.-+.|.|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446788999999999988777776644
No 240
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=41.19 E-value=46 Score=40.31 Aligned_cols=55 Identities=13% Similarity=0.010 Sum_probs=37.4
Q ss_pred HHHHHHH--HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 532 GLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 532 GL~WLv~--l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
+++.++. -+..+.-.+|+-+.|.|||..++.++...... .+++++|.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 5666654 34445556788899999999998888776542 2577877765544443
No 241
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=40.98 E-value=22 Score=41.07 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=32.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCcHHHHHHHHHH
Q 000139 541 EKRLNGILADEMGLGKTIMTIAMLAHLACEKG---------IWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 541 ~~~~gGILADEMGLGKTIQaIALLa~L~~~~g---------~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
..+.-.+|+-..|.|||..+..++..+. .| ..++++++.-.....+....+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 3444567788899999998888777553 22 13567777655444444333333
No 242
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.04 E-value=4.6 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
..|.+|.-+.|.|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3456788999999998887765543
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.96 E-value=62 Score=38.97 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
..+.+|.-++|.|||..+-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467889999999998876665443
No 244
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=39.64 E-value=39 Score=42.85 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=46.9
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEe
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1159 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfy 1159 (2062)
..|.||||.+....-.+.|...|..+|+....++... .+ ..+.+.+.+ .....|.-+..+..||+-
T Consensus 380 ~~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~-~~g~v~i~~---g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EA-SDRGRYLMI---GAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp HCCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GC-CTTCEEEEE---SCCCSCEEETTTTEEEEE
T ss_pred hCCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hc-CCCcEEEEE---cccccCcccCCCCEEEEE
Confidence 3578999999888888888888888898765553311 11 224443332 355678888888888887
Q ss_pred cCC
Q 000139 1160 DSD 1162 (2062)
Q Consensus 1160 D~d 1162 (2062)
+.+
T Consensus 446 E~e 448 (483)
T 3hjh_A 446 ESD 448 (483)
T ss_dssp HHH
T ss_pred chH
Confidence 743
No 245
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=38.82 E-value=75 Score=31.11 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHhhhCCCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000139 1073 ILLRKLKSDGHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1130 (2062)
Q Consensus 1073 ~LLrkLks~GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~ 1130 (2062)
..+..+.. .++|+||+. +-.....+..+|..+|+.|..++=.....-++.+...+..
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 34444444 447999984 5667788888999999999888877777777777776654
No 246
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=38.70 E-value=1.5e+02 Score=31.84 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS 1103 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~ 1103 (2062)
..++....+|+.+....|+||+|++.-...++.|-..|=
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 357888999999999999999999999999999999993
No 247
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.59 E-value=33 Score=35.61 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=38.0
Q ss_pred EEEEeCchHHH-------HHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHh
Q 000139 1085 ALIFTQMTKML-------DILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1085 VLIFSQ~t~mL-------DILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN 1129 (2062)
|.|||...... ..+..+|...|+.|--+|=++..+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 56777665443 5788899999999999999999999999999984
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=36.87 E-value=71 Score=35.41 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=34.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFL 594 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efk 594 (2062)
.+.-.+|+-..|.|||..++.++...... .++++++.-.....+....+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 34445778889999999988887776542 257888876655555544444
No 249
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=36.18 E-value=45 Score=39.57 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEF 593 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Ef 593 (2062)
+|+.+..-+..+.-.+|+-..|.|||..++.++...+. .+ .++|++.----..+....+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESSSCHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECCCCHHHHHHHH
Confidence 45655544555656799999999999988888777654 23 5889888665444444443
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=35.68 E-value=1.2e+02 Score=38.07 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=21.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
+++--.|.|||..+..+..++.. .| +.+++|+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~-~G--~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKK-RG--YKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH-TT--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-cC--CeEEEEe
Confidence 45667899999888777776654 33 3555554
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=35.54 E-value=95 Score=36.83 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=35.0
Q ss_pred HHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHh---cCCCCcEEEEecCCc
Q 000139 531 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACE---KGIWGPHLIVVPTSV 585 (2062)
Q Consensus 531 ~GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~---~g~~Gp~LIVvPtSL 585 (2062)
.+++.++. .+..+.-.+|+-+.|.|||..++.++...... .|..+++++|.-...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 35566653 23445556889999999999888877654321 112357788876543
No 252
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=35.27 E-value=1.1e+02 Score=31.41 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCC-cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1082 GHRALIFTQ------MTKMLDILEEFISLYGY-TYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1082 GhKVLIFSQ------~t~mLDILe~~L~~~Gi-~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
.++|+||+- +-.+-......|+..|+ .|..++=....+-|+.+.+.-+...-..|||=-...||
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence 369999976 34567777778888898 48888777777777777666555444556665544554
No 253
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.58 E-value=2.3e+02 Score=32.89 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
|+.++.-+.- +.. ...+|.-+.|.|||..+-.++..
T Consensus 18 R~~el~~L~~----l~~-~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 18 REKEIEKLKG----LRA-PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CHHHHHHHHH----TCS-SEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHH----hcC-CcEEEECCCCCCHHHHHHHHHHh
Confidence 6666655443 333 45678889999999777666544
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.21 E-value=42 Score=38.51 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE-e-cCCcHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV-V-PTSVMLNWET 591 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV-v-PtSLL~QW~~ 591 (2062)
..+.++.--.|.|||..++.+...+.. .|. .++|+ + |-.-...|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~--~V~v~d~D~q~~~~~~al 53 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLR-QGV--RVMAGVVETHGRAETEAL 53 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH-TTC--CEEEEECCCTTCHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-CCC--CEEEEEeCCCCChhHHHH
Confidence 346788999999999999998888765 343 34433 3 4445555553
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.79 E-value=83 Score=39.47 Aligned_cols=134 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+++--.|.|||.++..++.++.... .++++|+--.--..-...+..|.....+-+|.....
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~---------------- 164 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQE---------------- 164 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTC----------------
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCC----------------
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc----eEEEEeccCCCCChHHHHHHHHHhCC
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK----RRILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~----~RLLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
-..-..+......+....+++||||.+=+..+..........-.... ..+.+.+|--++.+.-...+-..+.+
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i 241 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPI 241 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTT
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCC
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=33.67 E-value=65 Score=39.13 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=35.7
Q ss_pred HHHHHHH--HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 532 GLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 532 GL~WLv~--l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
+|+.++. -+..+...+|+-..|.|||..++.++...... + +++++|....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g--~~vlyid~E~ 101 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G--KTCAFIDAEH 101 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-C--CeEEEEeCCC
Confidence 5666653 34455566889999999999999988877542 2 4778777643
No 257
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.48 E-value=1.1e+02 Score=35.53 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMYE----KRLNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~~----~~~gGILADEMGLGKTIQaIALLa~L 567 (2062)
++..+..+.-++.... ...+.+|.-+.|.|||..+-++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4555554443333221 23567899999999998877665543
No 258
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=33.11 E-value=60 Score=35.15 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
.+.+|.-+.|.|||..+.++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678899999999998887776654
No 259
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=32.82 E-value=41 Score=38.69 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=23.8
Q ss_pred CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHh
Q 000139 1681 NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILS 1722 (2062)
Q Consensus 1681 nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~ 1722 (2062)
-|..+++.. -.|+..+-|.||+.++..+.+.
T Consensus 173 ~fk~ia~~~-----------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 173 FFKHFAEEH-----------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp HHHHHHHHT-----------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred HHHHHHHHC-----------CCCChhhHHHHHHHHHhhcChH
Confidence 477787766 3388889999999988777553
No 260
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.67 E-value=1.8e+02 Score=28.35 Aligned_cols=94 Identities=10% Similarity=-0.085 Sum_probs=57.9
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccccccCc--ccCC
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGGVGINL--VGAD 1154 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~---D~~IfVfLLSTrAGG~GLNL--T~AD 1154 (2062)
..|..|..++.....+..+ ....+..+.+|-.++...-..++..... .+.+.|+++|......-... .+|+
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 3678888888776666554 3467788888876654444556666554 34677777776532221222 2344
Q ss_pred EEEEecCCCChhhHHHHHHhhhccC
Q 000139 1155 TVIFYDSDWNPAMDQQAQDRCHRIG 1179 (2062)
Q Consensus 1155 tVIfyD~dWNPa~d~QA~gRahRIG 1179 (2062)
.+ +--++++....+++.++-+-+
T Consensus 101 ~~--l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 101 AY--LVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EE--EESSCCHHHHHHHHHHHHHHH
T ss_pred eE--EeccCCHHHHHHHHHHHHhhh
Confidence 43 345789999988888876543
No 261
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=32.30 E-value=84 Score=32.12 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=37.4
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCc-EEEecCCCCHHHHHHHHHHHh
Q 000139 1082 GHRALIFTQ------MTKMLDILEEFISLYGYT-YMRLDGSTQPEERQTLMQRFN 1129 (2062)
Q Consensus 1082 GhKVLIFSQ------~t~mLDILe~~L~~~Gi~-y~RLDGsTs~eqRq~lmerFN 1129 (2062)
.++|+||+. +-..-.....+|+.+|+. |..++=....+-|+.+.+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg 73 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN 73 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC
Confidence 469999999 678888999999999995 888876666666666655443
No 262
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=32.18 E-value=56 Score=43.39 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=47.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCCcHHH-HHHHHHHH
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTSVMLN-WETEFLKW 596 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtSLL~Q-W~~Efkkw 596 (2062)
..|-+-|+.+|.. .....++---.|.|||.+.+.-++++....+. ...+|+|+.+....+ -...+.+.
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 3589999999853 23445555679999999999999998875443 356899988864433 33334443
No 263
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=30.95 E-value=1.1e+02 Score=35.94 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHH
Q 000139 526 REYQHIGLDWLVTMY----EKRLNGILADEMGLGKTIMTIAML 564 (2062)
Q Consensus 526 RpYQ~~GL~WLv~l~----~~~~gGILADEMGLGKTIQaIALL 564 (2062)
+...+..+.-++... ....+.+|.-+.|.|||..+-++.
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 444444444333332 223467899999999998876663
No 264
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=29.71 E-value=1.6e+02 Score=41.31 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=69.1
Q ss_pred ccccc--cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHHHHHhcC
Q 000139 1058 RRLIQ--FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLMQRFNTN 1131 (2062)
Q Consensus 1058 ~rLiq--~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsTs~eqRq~lmerFN~D 1131 (2062)
..+++ ..+||-.+....+-.....|.+|||.+..+....-....+. ..++.+..+.|..+..++...+.....
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~- 704 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE- 704 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc-
Confidence 44543 56899876655554455678899999998866654444433 346889999999999998888888864
Q ss_pred CCceEEEEeccccccccCcccCCEEEE
Q 000139 1132 PKIFLFILSTRSGGVGINLVGADTVIF 1158 (2062)
Q Consensus 1132 ~~IfVfLLSTrAGG~GLNLT~ADtVIf 1158 (2062)
+.+.|+|.+.......+++...+.||+
T Consensus 705 g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 705 GKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCCEEEECHHHHhCCccccccceEEE
Confidence 456676666665555667766665554
No 265
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=29.56 E-value=2e+02 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000139 52 ERKWKLAQAKKVALRASKGMLDQASRGEKKLKEEEQRLRKVAVNISKDVKKF 103 (2062)
Q Consensus 52 Er~wk~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ia~~iak~v~~F 103 (2062)
=|+|+.++ |+.-..+.++--..-..+.++++..+..+++..+.+++-.|
T Consensus 6 L~rWR~a~---lVlNa~RRFR~t~dL~K~~e~~~~~rkiR~~~~v~rAa~~F 54 (57)
T 4aqr_D 6 LQQWRKAA---LVLNASRRFRYTLDLKKEQETREMRQKIRSHAHALLAANRF 54 (57)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHhchHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899874 55555554443332333334445556678888888887776
No 266
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.48 E-value=49 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=18.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L 567 (2062)
+.+|.-+.|.|||..+-++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999887766655
No 267
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=29.36 E-value=2.6e+02 Score=30.74 Aligned_cols=53 Identities=19% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecCC
Q 000139 532 GLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPTS 584 (2062)
Q Consensus 532 GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~---g~~Gp~LIVvPtS 584 (2062)
++++++. ....+.-.+|+-..|.|||..+..++....... +..++++.|.-..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4566653 233344456788899999988877765422211 1234666665443
No 268
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.19 E-value=97 Score=30.24 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccc
Q 000139 1069 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1069 q~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~---D~~IfVfLLSTrAGG 1145 (2062)
..|..+|. ..|..|..++.....+..+ ....+..+.+|-.++...--.++..... .+.+.|+++|.....
T Consensus 17 ~~l~~~L~---~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 17 ETFKELLE---MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHH---HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHH---HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 34444444 3477888887766666554 4466788888866554444455555554 466777777755433
Q ss_pred cccCc--ccCCEEEEecCCCChhhHHHHHHhhhccCCc
Q 000139 1146 VGINL--VGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1146 ~GLNL--T~ADtVIfyD~dWNPa~d~QA~gRahRIGQT 1181 (2062)
.-... .+|+. ++--|+++....+++.++++-++.
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 90 DLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp TCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC-----
T ss_pred hHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCCC
Confidence 22221 23554 455678999999999988876543
No 269
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=28.23 E-value=1.8e+02 Score=35.11 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=59.0
Q ss_pred cccchHHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHH-HHcCC---cEEEecCCCCHHHHHHHHHHHhcCCCceEE
Q 000139 1063 FDCGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFI-SLYGY---TYMRLDGSTQPEERQTLMQRFNTNPKIFLF 1137 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L-~~~Gi---~y~RLDGsTs~eqRq~lmerFN~D~~IfVf 1137 (2062)
..+||--....++..+. ..+.++||.+.....+.-....+ ...|+ .+..+.|+.....+...... ..|+
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~iv 105 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVI 105 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CCEE
Confidence 46899776666655443 46789999999877666444444 44466 89999999998776655432 3455
Q ss_pred EEecccccc-----ccCcccCCEEEE
Q 000139 1138 ILSTRSGGV-----GINLVGADTVIF 1158 (2062)
Q Consensus 1138 LLSTrAGG~-----GLNLT~ADtVIf 1158 (2062)
|.+...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 666543322 345666776666
No 270
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=28.10 E-value=90 Score=41.16 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS 584 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS 584 (2062)
+.+-.-|..+|..+..... +. .+|--.-|-|||..+..+++.+. +.++|++|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-GV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-EE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh-Ce-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 4577889999988776432 22 35555699999955544444432 3468888984
No 271
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=26.71 E-value=2.1e+02 Score=36.42 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecC-CCCHHHHHHHHHHHhcCCCceEEEEec--cc
Q 000139 1068 LQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDG-STQPEERQTLMQRFNTNPKIFLFILST--RS 1143 (2062)
Q Consensus 1068 Lq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDG-sTs~eqRq~lmerFN~D~~IfVfLLST--rA 1143 (2062)
...|...|.++. ..+.++|||...-.+++.+.. ..++..+ +.| +++ +..+++.|..+++ -| |+++ .+
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~v-l~~v~gg~ 448 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNK-VL-IGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSS-CE-EEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCC-eE-EEEEecce
Confidence 355566665553 345578888777777766655 2344433 333 334 5678889964443 34 4554 68
Q ss_pred cccccCcc---c--CCEEEEecCCCChhhHHHHHHhh
Q 000139 1144 GGVGINLV---G--ADTVIFYDSDWNPAMDQQAQDRC 1175 (2062)
Q Consensus 1144 GG~GLNLT---~--ADtVIfyD~dWNPa~d~QA~gRa 1175 (2062)
..+|||+. + +..||+.-.|+-+. +-....|+
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~ 484 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILA 484 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHH
T ss_pred ecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHH
Confidence 89999999 4 77888877666333 33333444
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.49 E-value=32 Score=46.30 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
..|.+|.-..|.|||+.+-++...+ + .+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~----~--~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC----Q--ANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT----T--CEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh----C--CceEEeccchhhccc
Confidence 3467899999999998776655433 1 255555444555444
No 273
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=26.24 E-value=1.3e+02 Score=41.99 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=68.6
Q ss_pred ccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH---cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEE
Q 000139 1062 QFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL---YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFI 1138 (2062)
Q Consensus 1062 q~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~---~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfL 1138 (2062)
...+||-.+..-.+..+...|.++||.+.......-+...|.. .|+++..+.|+++..+|...+..+.. +.+.|+|
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~-g~~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT-SCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCEEE
Confidence 3568998866666555557788999999998887777777766 67899999999998888888888875 3355666
Q ss_pred Eecccccc---ccCcccCCEEEE
Q 000139 1139 LSTRSGGV---GINLVGADTVIF 1158 (2062)
Q Consensus 1139 LSTrAGG~---GLNLT~ADtVIf 1158 (2062)
.+....-. -+++...+.||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 66543311 134556666665
No 274
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=26.03 E-value=1e+02 Score=38.80 Aligned_cols=59 Identities=3% Similarity=-0.123 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
+|+.++.-+..+.-.+|+-..|.|||..++.++.+..... ..++|++.----..+....
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEESVEETAED 289 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSSCHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHH
Confidence 3455554344555678999999999999988888775432 2488888765444444443
No 275
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=25.52 E-value=1.1e+02 Score=30.24 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000139 1082 GHRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1130 (2062)
Q Consensus 1082 GhKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~ 1130 (2062)
.++|+||+. +-.....+..+|..+|+.|..++=....+-|+.+...+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 68 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW 68 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC
Confidence 468999988 3345667788889999999999888777777777666643
No 276
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.13 E-value=1.2e+02 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=37.9
Q ss_pred CeEEEEeC------chHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc
Q 000139 1083 HRALIFTQ------MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT 1130 (2062)
Q Consensus 1083 hKVLIFSQ------~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~ 1130 (2062)
.+|+||+. +-.....+..+|..+|+.|..++=....+.|+.+......
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~ 88 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW 88 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC
Confidence 48999987 6677888999999999999888877677777776665543
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.10 E-value=1.5e+02 Score=35.36 Aligned_cols=31 Identities=29% Similarity=0.096 Sum_probs=21.3
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 548 LADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 548 LADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
+.-..|.|||..+..+...+.. . .+.+|++.
T Consensus 110 ivG~~G~GKTT~~~~LA~~l~~-~--g~kVllid 140 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYYAE-L--GYKVLIAA 140 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHHHH-T--TCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEe
Confidence 4456999999888777666654 2 35677764
No 278
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.99 E-value=3.1e+02 Score=25.86 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=51.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccccccCc--ccCCEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGINL--VGADTVI 1157 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~GLNL--T~ADtVI 1157 (2062)
.|..|..++.....+..+ ....+..+.+|-.++...--.++..+.. .+.+.|+++|...... ... .+|+..|
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 577887776655555544 3456777777765543222344444433 3556676776543222 222 2455433
Q ss_pred EecCCCChhhHHHHHHhhhc
Q 000139 1158 FYDSDWNPAMDQQAQDRCHR 1177 (2062)
Q Consensus 1158 fyD~dWNPa~d~QA~gRahR 1177 (2062)
--++++....+++.++.|
T Consensus 99 --~Kp~~~~~l~~~i~~~~~ 116 (116)
T 3a10_A 99 --VKSFNFDELKEKVKKLLS 116 (116)
T ss_dssp --ECCSSTHHHHHHHHHHTC
T ss_pred --ECCCCHHHHHHHHHHHhC
Confidence 457888888888877653
No 279
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=24.65 E-value=1.1e+02 Score=33.86 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=35.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
.+.-.+|+-+.|.|||..++-+++......+ ++++++.-..-..+....+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCCHHHHHHHHHH
Confidence 3445689999999999999888776544333 377888765555554444443
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.35 E-value=85 Score=38.21 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=34.7
Q ss_pred HHHHHHH--HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000139 532 GLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 532 GL~WLv~--l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q 588 (2062)
.|+.++. -+..+.-.+|.-+.|.|||..++.++..+... .+++++|.......+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccch
Confidence 4555543 22333334667789999999888888776542 257888877654443
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.10 E-value=1.2e+02 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=20.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV 581 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv 581 (2062)
+|.-..|.|||..+..+...+....| ..+++|.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 34445899999887776666543333 2556554
No 282
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.06 E-value=2.5e+02 Score=27.79 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=52.7
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEecccccccc-Cc--ccCCE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGGVGI-NL--VGADT 1155 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG~GL-NL--T~ADt 1155 (2062)
..|..|..++.....+..+. ...+..+.+|- ++...-..++..... .+.+.|+++|......-+ .. .+|+.
T Consensus 26 ~~g~~v~~~~~~~~a~~~l~----~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (142)
T 2qxy_A 26 KDGFNVIWAKNEQEAFTFLR----REKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVD 100 (142)
T ss_dssp GGTCEEEEESSHHHHHHHHT----TSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSC
T ss_pred hCCCEEEEECCHHHHHHHHh----ccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcce
Confidence 35777777766655555443 35677777777 654444455555543 345677777654322111 11 23443
Q ss_pred EEEecCCCChhhHHHHHHhhhccCCcCcEE
Q 000139 1156 VIFYDSDWNPAMDQQAQDRCHRIGQTREVH 1185 (2062)
Q Consensus 1156 VIfyD~dWNPa~d~QA~gRahRIGQTRdV~ 1185 (2062)
+| --+.++....+++.++.+-.+.....
T Consensus 101 ~l--~kP~~~~~l~~~i~~~~~~~~~~~~~ 128 (142)
T 2qxy_A 101 YI--LKPFRLDYLLERVKKIISSTPRVTVS 128 (142)
T ss_dssp EE--ESSCCHHHHHHHHHHHHHC-------
T ss_pred eE--eCCCCHHHHHHHHHHHHhhccccchH
Confidence 33 34678888888888877755544433
No 283
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=24.01 E-value=96 Score=36.65 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
+.+.+|.-++|.|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999988877665
No 284
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=23.92 E-value=46 Score=39.08 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=24.7
Q ss_pred CCCChhhhHHHHHHHHhcCC-CchhHHH
Q 000139 1661 DVWLPQEDAILCAVVHEYGP-NWSLVSD 1687 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~~g~-nw~l~~~ 1687 (2062)
-.|+..||..|+.=||.||= ||..|-+
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 48999999999999999996 9999865
No 285
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=23.90 E-value=61 Score=26.39 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHhhhh
Q 000139 104 WMKIEKLVLYKHQMEVDVRKKKALDKQL 131 (2062)
Q Consensus 104 W~~iek~v~~K~Q~~leekrKkALd~~L 131 (2062)
|.+||-+ +-++..|+.||+++.++|-
T Consensus 7 e~~iedi--~~ei~~l~~kr~~l~~qhP 32 (33)
T 1r48_A 7 EQKIDDI--DHEIADLQAKRTRLVQQHP 32 (33)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhhH--HHHHHHHHHHHHHHHHcCC
Confidence 6677766 8889999999999999873
No 286
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=23.85 E-value=49 Score=46.32 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=33.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q 588 (2062)
-|+|- .|.|||.+.+.-|+++........++|+|||....-+
T Consensus 5 lV~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt 46 (1166)
T 3u4q_B 5 FLVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL 46 (1166)
T ss_dssp EEEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH
T ss_pred EEEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH
Confidence 35554 9999999999999998876444478999999987666
No 287
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=23.59 E-value=4.1e+02 Score=28.77 Aligned_cols=92 Identities=10% Similarity=0.132 Sum_probs=54.7
Q ss_pred cccchHHHHHH-HHHHhhh--CCCeEEEEeCchHHHHHHHHHHHHc-----CCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 000139 1063 FDCGKLQELAI-LLRKLKS--DGHRALIFTQMTKMLDILEEFISLY-----GYTYMRLDGSTQPEERQTLMQRFNTNPKI 1134 (2062)
Q Consensus 1063 ~dSGKLq~L~~-LLrkLks--~GhKVLIFSQ~t~mLDILe~~L~~~-----Gi~y~RLDGsTs~eqRq~lmerFN~D~~I 1134 (2062)
..+||--.... ++..+.. .+.++||.+.......-+...+... ++++..+.|+.+...+...+.. ...
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~ 135 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCP 135 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH----SCC
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc----CCC
Confidence 46899755443 3343332 2348999999877766655555443 7899999999987665544432 223
Q ss_pred eEEEEecccc-----ccccCcccCCEEEE
Q 000139 1135 FLFILSTRSG-----GVGINLVGADTVIF 1158 (2062)
Q Consensus 1135 fVfLLSTrAG-----G~GLNLT~ADtVIf 1158 (2062)
.|++.+.... ...+++...+.||+
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 4555544322 12355666666665
No 288
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=23.57 E-value=1.8e+02 Score=34.28 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=25.6
Q ss_pred HHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 531 IGLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 531 ~GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
.++++++. -+..+.-.+|+-+.|.|||..++.++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666653 2334445578999999999988887765
No 289
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=23.35 E-value=99 Score=37.83 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCccccc----cccCChhhHHHHHHHHHHHHHhCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRG----RYRHPVHCCERFRELIQRYILSVP 1724 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~----~~r~~~~c~~r~~~~~~~~~~~~~ 1724 (2062)
+-.|+.+||..|...||.||= ||+.|-+-| +.+-.++= .-|+|..+..|-..||.-..-+..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I---r~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI---RDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH---HHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH---HhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999994 699997766 33322220 239999999999999977665544
No 290
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.07 E-value=3.4e+02 Score=26.89 Aligned_cols=94 Identities=5% Similarity=-0.067 Sum_probs=42.9
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH-HHHHHHHHHHhcCCCceEEEEeccccccc-cCcccCCEEEE
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP-EERQTLMQRFNTNPKIFLFILSTRSGGVG-INLVGADTVIF 1158 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~-eqRq~lmerFN~D~~IfVfLLSTrAGG~G-LNLT~ADtVIf 1158 (2062)
.|..|..++.....+..+.. ...+..+.+|-.++. ..--.++......+.+.|+++|......- .....+...-|
T Consensus 28 ~g~~v~~~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 104 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVSG---GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGY 104 (140)
T ss_dssp TTCEEEEESSHHHHHHHHHT---TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEE
T ss_pred cCCEEEEecChHHHHHHHhc---CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEE
Confidence 36677666665555544421 134556666543321 11122222222224555666655433211 11222222334
Q ss_pred ecCCCChhhHHHHHHhhhc
Q 000139 1159 YDSDWNPAMDQQAQDRCHR 1177 (2062)
Q Consensus 1159 yD~dWNPa~d~QA~gRahR 1177 (2062)
+--++++....+++.++.+
T Consensus 105 l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 105 VMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EETTCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 4455677776666666554
No 291
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=23.03 E-value=2.8e+02 Score=26.90 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=53.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc-----cc-cCcccCC
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG-----VG-INLVGAD 1154 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG-----~G-LNLT~AD 1154 (2062)
+..|..++.....+..+ ... +..+.+|-.++...--.++..+.. .+.+.|+++|..... .. ....++.
T Consensus 27 ~~~v~~~~~~~~~~~~~----~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTLS----LNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTSC----CCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHhh----ccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 55666666554443332 223 667777766665455556666554 356677777654431 11 1122333
Q ss_pred EEEEecCCCChhhHHHHHHhhhccCCcC
Q 000139 1155 TVIFYDSDWNPAMDQQAQDRCHRIGQTR 1182 (2062)
Q Consensus 1155 tVIfyD~dWNPa~d~QA~gRahRIGQTR 1182 (2062)
..-|+--|+++....+++.++..-++..
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~~ 129 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAEG 129 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC---
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhcccc
Confidence 3344556788888888888887766543
No 292
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.87 E-value=1.6e+02 Score=27.69 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=52.5
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC---CCceEEEEeccccccccCc--ccCC
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN---PKIFLFILSTRSGGVGINL--VGAD 1154 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D---~~IfVfLLSTrAGG~GLNL--T~AD 1154 (2062)
..|..|..++.....+..+. ...+..+.+|-.++...-..++...... +.+.|++++...... .. .+|+
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 45788888776666665553 3467777777655432333455555432 556666776543332 22 2344
Q ss_pred EEEEecCCCChhhHHHHHHhhhc
Q 000139 1155 TVIFYDSDWNPAMDQQAQDRCHR 1177 (2062)
Q Consensus 1155 tVIfyD~dWNPa~d~QA~gRahR 1177 (2062)
.+ +--+.++....+++.++.+
T Consensus 97 ~~--l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 97 AI--LSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EE--CSSCSTTHHHHHHHHTTCC
T ss_pred Hh--ccCCCCHHHHHHHHHHHhc
Confidence 43 4457788888888877654
No 293
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.51 E-value=29 Score=43.45 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~ 590 (2062)
..|.+|.-..|.|||+.|-|+...+. -|++.|....++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhccc
Confidence 45778899999999998877766542 2677777777765553
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.48 E-value=1.2e+02 Score=44.95 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=42.5
Q ss_pred HHHHHHHH--HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHH
Q 000139 531 IGLDWLVT--MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590 (2062)
Q Consensus 531 ~GL~WLv~--l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~ 590 (2062)
..+++++. -+..+...+|+-+.|.|||..++.++..+... .+++++|.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 34666664 34455566899999999999999888877542 35899998777777775
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.94 E-value=1.4e+02 Score=36.17 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 531 IGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 531 ~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
..|+.+...+..+.-.||+-..|.|||..++.++.+.+. ..+++|++..---..+...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHH
Confidence 356666554555556789999999999999888877765 2358888876544444333
No 296
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.87 E-value=2.5e+02 Score=33.64 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhc---CCCCcEEEEecCC
Q 000139 532 GLDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEK---GIWGPHLIVVPTS 584 (2062)
Q Consensus 532 GL~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~---g~~Gp~LIVvPtS 584 (2062)
+++.++. .+..+.-.+|+-+.|.|||..++.++....... +..+++++|.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4566553 233344457899999999998887776532211 1346788887654
No 297
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.50 E-value=1.7e+02 Score=40.59 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=63.7
Q ss_pred ccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHH----HHHHHHHcCC----cEEEecCCCCHHHHHHHHHHHhcCCC
Q 000139 1062 QFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDI----LEEFISLYGY----TYMRLDGSTQPEERQTLMQRFNTNPK 1133 (2062)
Q Consensus 1062 q~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDI----Le~~L~~~Gi----~y~RLDGsTs~eqRq~lmerFN~D~~ 1133 (2062)
...|||--.+.-++..+...|.++||.+.......- +..++...|+ .+..+.|+++...+....+.+..
T Consensus 79 pTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--- 155 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--- 155 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---
Confidence 357899877777777777778899999998776544 4444445577 88999999998888777777765
Q ss_pred ceEEEEeccccccccC-cccCCEEEE
Q 000139 1134 IFLFILSTRSGGVGIN-LVGADTVIF 1158 (2062)
Q Consensus 1134 IfVfLLSTrAGG~GLN-LT~ADtVIf 1158 (2062)
+.|++.+....-.-+. |...+.||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 5566666533322222 444555554
No 298
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.31 E-value=7.8e+02 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
..|.+|.-++|.|||..+-++...+ + .|++.|-...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~----~--~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA----K--VPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH----T--CCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc----C--CCEEEEeHHHH
Confidence 3466889999999998776665443 1 25555544433
No 299
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.26 E-value=3e+02 Score=26.69 Aligned_cols=96 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred hCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCH-HHHHHHHHHHhc-CCCceEEEEeccccccc-cCcccCCE
Q 000139 1080 SDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQP-EERQTLMQRFNT-NPKIFLFILSTRSGGVG-INLVGADT 1155 (2062)
Q Consensus 1080 s~GhKVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsTs~-eqRq~lmerFN~-D~~IfVfLLSTrAGG~G-LNLT~ADt 1155 (2062)
..|..|..++.....+..+ ... .+..+.+|-.++. ..--.++..+.. .+.+.|+++|....... .....+.
T Consensus 27 ~~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~- 101 (132)
T 2rdm_A 27 DAGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS- 101 (132)
T ss_dssp HTTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC-
T ss_pred HcCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc-
Confidence 3577777766655555444 333 5666777654432 122233443332 34566666665432211 1111122
Q ss_pred EEEecCCCChhhHHHHHHhhhccCCc
Q 000139 1156 VIFYDSDWNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1156 VIfyD~dWNPa~d~QA~gRahRIGQT 1181 (2062)
-++--+.++....+++.++.+.++.
T Consensus 102 -~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 102 -IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp -EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred -ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 2445577888888888888776654
No 300
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.84 E-value=5e+02 Score=25.41 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc---CCCceEEEEeccccc
Q 000139 1069 QELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT---NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1069 q~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~---D~~IfVfLLSTrAGG 1145 (2062)
..|..+|.. .|..|..++.....++.+ ....+..+.+|-..+...--.++..... .+.+.|+++|.....
T Consensus 21 ~~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 93 (142)
T 3cg4_A 21 IAVKTILSD---AGFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAP 93 (142)
T ss_dssp HHHHHHHHH---TTCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCC
T ss_pred HHHHHHHHH---CCeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCH
Confidence 344444443 367777666655555444 3445667777655432222344444443 456777777654322
Q ss_pred c-ccCcccCCEEEEecCCCChhhHHHHHHhhhcc
Q 000139 1146 V-GINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 1178 (2062)
Q Consensus 1146 ~-GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRI 1178 (2062)
. -.....+...-++--+.++....+++.++.|.
T Consensus 94 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 94 DAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp CCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 12222222233444567888777777776553
No 301
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=20.73 E-value=3.5e+02 Score=29.80 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=55.5
Q ss_pred cccchHHH-HHHHHHHhhh--CCCeEEEEeCchHHHHHHHHHHHHc-----CCcEEEecCCCCHHHHHHHHHHHhcCCCc
Q 000139 1063 FDCGKLQE-LAILLRKLKS--DGHRALIFTQMTKMLDILEEFISLY-----GYTYMRLDGSTQPEERQTLMQRFNTNPKI 1134 (2062)
Q Consensus 1063 ~dSGKLq~-L~~LLrkLks--~GhKVLIFSQ~t~mLDILe~~L~~~-----Gi~y~RLDGsTs~eqRq~lmerFN~D~~I 1134 (2062)
..+||--. +.-++..+.. .+.++||.+.......-+...+... ++++..+.|+.+..++...+ + +.
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~ 143 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KC 143 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SC
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CC
Confidence 46899765 5556666533 3579999999877766665555432 78889999998866554432 2 34
Q ss_pred eEEEEecccc-----ccccCcccCCEEEE
Q 000139 1135 FLFILSTRSG-----GVGINLVGADTVIF 1158 (2062)
Q Consensus 1135 fVfLLSTrAG-----G~GLNLT~ADtVIf 1158 (2062)
.|++.+.... ...+++...+.||+
T Consensus 144 ~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 5555554322 12345555555544
No 302
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=20.69 E-value=9.1e+02 Score=28.37 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhCCCeEEEEe--Cch---HHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc-
Q 000139 1070 ELAILLRKLKSDGHRALIFT--QMT---KMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS- 1143 (2062)
Q Consensus 1070 ~L~~LLrkLks~GhKVLIFS--Q~t---~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA- 1143 (2062)
.+..++..+ ..|.+|.+.| -.+ .....|...|..+|+.+..+-|-++.. .+.....-...-|+|+ +..-
T Consensus 77 ~~~~li~~l-~~G~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~---aA~a~~Glp~~~f~f~-g~~p~ 151 (296)
T 3kwp_A 77 RIPQLIAKL-KQGMQIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGL---TALIASGLAPQPFYFY-GFLDR 151 (296)
T ss_dssp HHHHHHHHH-HTTCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHH---HHHHHHSSCCSSEEEE-EECCS
T ss_pred HhHHHHHHH-hcCceEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccch---HHHHhccCCCCceeEE-eeccC
Confidence 334444433 4577887776 333 334456677788899999999987632 3333333344556665 3211
Q ss_pred --ccccc---Cc-ccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1144 --GGVGI---NL-VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1144 --GG~GL---NL-T~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
++.-. +| ....|+|||.++.+.....+.+-.. .|..++|.|.+=++
T Consensus 152 ~~~~r~~~l~~l~~~~~tlV~y~~~~rl~~~l~~L~~~--~g~~~~v~v~~~lt 203 (296)
T 3kwp_A 152 KPKDRKAEIAGLAQRPETLIFYEAPHRLKKTLQNLAAG--FGDERPAVLCRELT 203 (296)
T ss_dssp SHHHHHHHHHTTTTCCSEEEEEECGGGHHHHHHHHHHH--HCTTCEEEEEESTT
T ss_pred CcHHHHHHHHHhhcCCceeEeeeCcHHHHHHHHHHHHH--hCCcchhHHHHHHH
Confidence 11111 22 2357899999887766655555443 57667777655433
No 303
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.14 E-value=84 Score=37.49 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=45.7
Q ss_pred CCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCcccc----ccccCChhhHHHHHHHHHHHHHhC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYR----GRYRHPVHCCERFRELIQRYILSV 1723 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~----~~~r~~~~c~~r~~~~~~~~~~~~ 1723 (2062)
+-.|+.+||..|...+|.||= ||+.|.+-+ +.+-.++ =.-|+|.....|-..||.-..-+.
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I---r~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI---RASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH---HHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH---HhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999995 699998766 3221111 023999999999999987654443
Done!