Query 000139
Match_columns 2062
No_of_seqs 650 out of 2759
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 19:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000139.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000139hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 3.7E-44 2.7E-48 431.6 22.4 173 1064-1236 99-273 (346)
2 d1z63a1 c.37.1.19 (A:432-661) 100.0 6E-42 4.3E-46 389.7 22.2 225 516-757 4-230 (230)
3 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 7.7E-42 5.6E-46 403.6 15.4 232 516-747 47-298 (298)
4 d1z5za1 c.37.1.19 (A:663-906) 100.0 1.3E-39 9.4E-44 374.1 20.3 172 1065-1236 68-240 (244)
5 d2fwra1 c.37.1.19 (A:257-456) 99.8 2.1E-19 1.6E-23 199.0 9.1 123 1063-1194 76-199 (200)
6 d1wp9a2 c.37.1.19 (A:201-486) 99.7 1.4E-18 1E-22 202.3 13.6 134 1063-1201 140-283 (286)
7 d2fz4a1 c.37.1.19 (A:24-229) D 99.7 1.9E-18 1.4E-22 192.5 13.4 137 522-684 68-205 (206)
8 d1rifa_ c.37.1.23 (A:) DNA hel 99.7 3.6E-17 2.6E-21 190.8 14.1 164 522-701 111-278 (282)
9 d1s2ma2 c.37.1.19 (A:252-422) 99.7 1.4E-16 1E-20 172.6 15.6 131 1065-1203 17-147 (171)
10 d1t5ia_ c.37.1.19 (A:) Spliceo 99.7 2E-16 1.5E-20 170.9 16.6 134 1064-1204 11-144 (168)
11 d1hv8a2 c.37.1.19 (A:211-365) 99.6 1.1E-15 8.1E-20 162.7 15.8 129 1065-1202 14-142 (155)
12 d1fuka_ c.37.1.19 (A:) Initiat 99.6 2.3E-15 1.7E-19 161.7 14.5 124 1064-1193 11-134 (162)
13 d1wp9a1 c.37.1.19 (A:1-200) pu 99.6 3.6E-15 2.6E-19 163.4 16.1 167 523-701 8-182 (200)
14 d2j0sa2 c.37.1.19 (A:244-411) 99.6 1.4E-14 9.9E-19 156.5 16.1 130 1065-1202 19-148 (168)
15 d2rb4a1 c.37.1.19 (A:307-474) 99.5 2.6E-14 1.9E-18 154.2 15.0 130 1065-1202 17-152 (168)
16 d1oywa3 c.37.1.19 (A:207-406) 99.4 8.5E-13 6.2E-17 146.1 14.9 122 1065-1192 15-136 (200)
17 d2p6ra3 c.37.1.19 (A:1-202) He 99.4 5.6E-13 4.1E-17 146.8 10.3 163 524-704 25-197 (202)
18 d1t5la2 c.37.1.19 (A:415-595) 99.3 8.9E-12 6.5E-16 135.8 17.4 114 1066-1181 15-133 (181)
19 d2bmfa2 c.37.1.14 (A:178-482) 99.3 3.5E-12 2.6E-16 147.4 14.4 96 1081-1183 177-292 (305)
20 d1yksa1 c.37.1.14 (A:185-324) 99.3 3.9E-12 2.8E-16 129.6 10.0 133 539-684 3-139 (140)
21 d1gkub1 c.37.1.16 (B:1-250) He 99.2 6.3E-12 4.6E-16 141.6 10.6 159 524-692 43-222 (237)
22 d1c4oa2 c.37.1.19 (A:410-583) 99.2 5.8E-11 4.2E-15 128.1 16.8 108 1071-1180 20-132 (174)
23 d1a1va1 c.37.1.14 (A:190-325) 99.2 1.4E-11 1E-15 126.9 9.2 125 542-684 7-136 (136)
24 d1oywa2 c.37.1.19 (A:1-206) Re 99.1 4.2E-11 3E-15 131.7 9.4 168 523-701 24-201 (206)
25 d1gm5a3 c.37.1.19 (A:286-549) 99.0 2.6E-10 1.9E-14 130.6 11.1 158 522-689 81-246 (264)
26 d2eyqa3 c.37.1.19 (A:546-778) 98.8 9.4E-09 6.8E-13 115.6 15.2 157 523-689 54-218 (233)
27 d1gkub2 c.37.1.16 (B:251-498) 98.8 1.5E-10 1.1E-14 131.5 -1.2 102 1065-1180 11-116 (248)
28 d1hv8a1 c.37.1.19 (A:3-210) Pu 98.7 3.8E-08 2.8E-12 108.6 13.9 159 524-691 26-192 (208)
29 d1gvda_ a.4.1.3 (A:) c-Myb, DN 98.7 2.4E-09 1.8E-13 93.1 3.1 46 1660-1716 3-49 (52)
30 d1jr6a_ c.37.1.14 (A:) HCV hel 98.7 1E-08 7.3E-13 106.7 7.9 99 1081-1193 34-136 (138)
31 d1guua_ a.4.1.3 (A:) c-Myb, DN 98.7 5.9E-09 4.3E-13 90.0 4.5 47 1660-1717 1-48 (50)
32 d1w0ta_ a.4.1.4 (A:) DNA-bindi 98.7 8E-09 5.8E-13 89.8 5.2 48 1660-1716 2-50 (52)
33 d1t6na_ c.37.1.19 (A:) Spliceo 98.6 6.7E-08 4.9E-12 106.6 13.7 162 524-692 23-194 (207)
34 d1veca_ c.37.1.19 (A:) DEAD bo 98.6 1E-07 7.5E-12 105.0 13.6 154 524-684 25-187 (206)
35 d2j0sa1 c.37.1.19 (A:22-243) P 98.6 9.3E-08 6.7E-12 106.8 12.9 154 524-684 39-200 (222)
36 d2p6ra4 c.37.1.19 (A:203-403) 98.6 6.2E-08 4.5E-12 106.6 11.2 119 1071-1193 29-186 (201)
37 d1wrba1 c.37.1.19 (A:164-401) 98.5 2.7E-07 2E-11 103.9 15.0 167 523-700 42-229 (238)
38 d1w0ua_ a.4.1.4 (A:) Telomeric 98.5 2.9E-08 2.1E-12 87.2 5.1 50 1660-1718 2-52 (55)
39 d2g9na1 c.37.1.19 (A:21-238) I 98.5 1.7E-07 1.2E-11 104.3 12.6 162 524-692 34-203 (218)
40 d1q0ua_ c.37.1.19 (A:) Probabl 98.5 2.1E-07 1.5E-11 102.0 12.4 161 524-692 23-195 (209)
41 d1gv2a2 a.4.1.3 (A:144-190) c- 98.5 2.4E-08 1.8E-12 84.9 3.7 46 1660-1716 1-46 (47)
42 d1s2ma1 c.37.1.19 (A:46-251) P 98.4 1E-06 7.3E-11 96.7 15.4 160 524-691 23-190 (206)
43 d1x41a1 a.4.1.1 (A:8-54) Trans 98.4 9.6E-08 7E-12 81.2 4.6 43 1662-1715 3-46 (47)
44 d1qdea_ c.37.1.19 (A:) Initiat 98.4 7E-07 5.1E-11 98.7 12.1 159 524-691 32-198 (212)
45 d1gm5a4 c.37.1.19 (A:550-755) 98.3 6.3E-08 4.6E-12 106.9 3.1 125 1065-1193 12-148 (206)
46 d1a1va2 c.37.1.14 (A:326-624) 98.3 1.6E-07 1.2E-11 107.5 6.5 113 1082-1200 36-161 (299)
47 d2cqra1 a.4.1.3 (A:7-66) DnaJ 98.3 2.8E-07 2E-11 82.3 5.4 46 1659-1715 11-60 (60)
48 d2ckxa1 a.4.1.3 (A:578-660) Te 98.3 2.9E-07 2.1E-11 87.4 5.4 53 1662-1721 2-55 (83)
49 d2cjja1 a.4.1.3 (A:8-70) Radia 98.2 5.2E-07 3.8E-11 81.3 5.1 49 1660-1719 1-53 (63)
50 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 98.1 1.4E-06 1.1E-10 78.7 6.1 55 1660-1725 2-56 (65)
51 d1igna1 a.4.1.6 (A:360-445) DN 98.0 8E-07 5.8E-11 84.7 2.2 50 1660-1720 1-56 (86)
52 d2eyqa5 c.37.1.19 (A:779-989) 97.9 2.2E-05 1.6E-09 86.1 12.3 117 1071-1191 20-139 (211)
53 d2iw5b1 a.4.1.3 (B:376-440) RE 97.8 6.8E-06 5E-10 74.2 4.5 46 1660-1716 5-50 (65)
54 d1yksa2 c.37.1.14 (A:325-623) 97.7 7.4E-05 5.4E-09 86.3 11.9 92 1081-1179 35-145 (299)
55 d1ug2a_ a.4.1.3 (A:) 2610100b2 97.6 4.4E-05 3.2E-09 72.9 7.9 55 1660-1725 33-90 (95)
56 d1tf5a4 c.37.1.19 (A:396-570) 97.6 0.0001 7.4E-09 78.4 11.5 119 1064-1186 16-142 (175)
57 d1xc5a1 a.4.1.3 (A:413-480) Nu 97.6 2E-05 1.4E-09 71.8 4.2 44 1660-1714 17-60 (68)
58 d1nkta4 c.37.1.19 (A:397-615) 96.0 0.027 2E-06 60.7 13.3 133 1063-1204 15-199 (219)
59 d1tf5a3 c.37.1.19 (A:1-226,A:3 95.4 0.025 1.8E-06 63.2 10.8 159 522-697 78-264 (273)
60 d1nkta3 c.37.1.19 (A:-15-225,A 94.5 0.047 3.4E-06 61.3 9.9 156 523-694 96-276 (288)
61 d1w36d1 c.37.1.19 (D:2-360) Ex 94.4 0.045 3.2E-06 64.1 9.8 146 525-686 149-299 (359)
62 d1a5ta2 c.37.1.20 (A:1-207) de 92.2 0.071 5.2E-06 57.3 6.3 48 524-571 2-52 (207)
63 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 90.6 0.14 1E-05 44.5 5.2 45 1661-1717 2-50 (59)
64 d1njfa_ c.37.1.20 (A:) delta p 88.1 0.99 7.2E-05 48.8 11.2 137 529-692 17-162 (239)
65 d1t5la1 c.37.1.19 (A:2-414) Nu 82.6 1.1 8.2E-05 52.8 8.7 74 528-607 15-90 (413)
66 d2crga1 a.4.1.3 (A:8-64) Metas 82.6 0.4 2.9E-05 41.3 3.4 42 1661-1713 2-44 (57)
67 d1gm5a3 c.37.1.19 (A:286-549) 82.5 2.3 0.00017 47.1 10.8 107 1052-1161 100-213 (264)
68 d1sxje2 c.37.1.20 (E:4-255) Re 81.5 0.24 1.7E-05 53.6 2.0 48 645-692 130-178 (252)
69 d2gnoa2 c.37.1.20 (A:11-208) g 80.6 4.2 0.00031 42.8 11.7 54 529-583 2-55 (198)
70 d1uaaa1 c.37.1.19 (A:2-307) DE 77.0 1.2 9E-05 48.9 6.2 57 524-586 1-58 (306)
71 d1sxjb2 c.37.1.20 (B:7-230) Re 75.5 1 7.5E-05 47.9 4.8 25 545-569 38-62 (224)
72 d1c4oa1 c.37.1.19 (A:2-409) Nu 75.1 2.6 0.00019 49.4 8.7 75 527-607 11-87 (408)
73 d2eyqa3 c.37.1.19 (A:546-778) 71.9 10 0.00075 40.9 11.9 107 1052-1161 72-185 (233)
74 d1sxjc2 c.37.1.20 (C:12-238) R 66.4 4.8 0.00035 42.2 7.7 24 545-568 37-60 (227)
75 d1iqpa2 c.37.1.20 (A:2-232) Re 65.2 4.4 0.00032 42.7 7.1 26 544-569 46-71 (231)
76 d1r6bx2 c.37.1.20 (X:169-436) 64.8 11 0.00078 41.6 10.4 37 533-569 27-65 (268)
77 d1ixza_ c.37.1.20 (A:) AAA dom 64.8 3.6 0.00026 44.8 6.3 39 544-588 43-81 (247)
78 d1pjra1 c.37.1.19 (A:1-318) DE 62.1 4.5 0.00033 44.6 6.6 59 524-588 11-70 (318)
79 d1sxjd2 c.37.1.20 (D:26-262) R 60.3 3.6 0.00026 43.3 5.1 25 545-569 35-59 (237)
80 d2qy9a2 c.37.1.10 (A:285-495) 59.2 14 0.001 39.1 9.7 135 547-702 13-157 (211)
81 d1nlfa_ c.37.1.11 (A:) Hexamer 57.4 2.8 0.0002 45.4 3.7 55 543-597 29-90 (274)
82 d1tf7a2 c.37.1.11 (A:256-497) 56.9 10 0.00074 39.8 8.1 61 533-596 15-76 (242)
83 d1e32a2 c.37.1.20 (A:201-458) 56.8 4 0.00029 44.6 4.8 41 543-589 38-78 (258)
84 d1xpja_ c.108.1.18 (A:) Hypoth 55.5 5.3 0.00038 39.3 4.9 43 1070-1112 28-83 (124)
85 d1sxja2 c.37.1.20 (A:295-547) 55.5 6.3 0.00046 41.8 6.1 45 644-688 121-168 (253)
86 d1vmaa2 c.37.1.10 (A:82-294) G 55.0 15 0.0011 38.9 9.1 134 547-702 15-159 (213)
87 d1jbka_ c.37.1.20 (A:) ClpB, A 54.9 17 0.0013 38.0 9.3 28 542-569 42-69 (195)
88 d1l8qa2 c.37.1.20 (A:77-289) C 52.3 36 0.0026 35.5 11.6 24 546-569 39-62 (213)
89 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 51.9 8.8 0.00064 33.0 5.1 47 1660-1716 2-57 (59)
90 d1fnna2 c.37.1.20 (A:1-276) CD 51.5 22 0.0016 37.2 9.8 43 526-568 21-68 (276)
91 d1lv7a_ c.37.1.20 (A:) AAA dom 50.2 6.7 0.00049 42.8 5.3 39 543-587 45-83 (256)
92 d1okkd2 c.37.1.10 (D:97-303) G 50.0 28 0.002 36.6 10.1 140 542-702 5-154 (207)
93 d1xx6a1 c.37.1.24 (A:2-142) Th 48.3 44 0.0032 32.9 10.7 36 547-585 11-46 (141)
94 d1ls1a2 c.37.1.10 (A:89-295) G 44.3 35 0.0025 35.8 9.8 135 547-702 14-152 (207)
95 d1xbta1 c.37.1.24 (A:18-150) T 42.7 20 0.0015 35.0 7.1 36 547-585 6-41 (133)
96 d1d2na_ c.37.1.20 (A:) Hexamer 41.6 15 0.0011 39.6 6.4 21 545-565 42-62 (246)
97 d1qvra2 c.37.1.20 (A:149-535) 38.5 41 0.003 38.6 9.9 28 542-569 42-69 (387)
98 d1j8yf2 c.37.1.10 (F:87-297) G 37.9 42 0.0031 35.3 9.1 135 547-702 16-156 (211)
99 d2b8ta1 c.37.1.24 (A:11-149) T 35.4 51 0.0037 32.3 8.8 36 547-585 6-41 (139)
100 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 34.7 21 0.0015 42.5 6.8 56 523-584 10-66 (623)
101 d2eyqa5 c.37.1.19 (A:779-989) 34.3 93 0.0067 32.6 11.0 106 572-684 29-141 (211)
102 d2obba1 c.108.1.25 (A:1-122) H 31.8 16 0.0012 35.4 4.1 43 1071-1113 26-69 (122)
103 d1wika_ c.47.1.1 (A:) Thioredo 30.6 37 0.0027 32.0 6.4 65 1081-1145 13-83 (109)
104 d1em8a_ c.128.1.1 (A:) DNA pol 29.2 92 0.0067 30.5 9.5 80 1066-1163 20-103 (147)
105 d1cr2a_ c.37.1.11 (A:) Gene 4 28.7 35 0.0026 36.3 6.8 58 533-592 25-82 (277)
106 d2eyqa2 c.37.1.19 (A:349-465) 27.6 39 0.0028 32.1 6.0 71 1078-1162 30-100 (117)
107 d1g5ta_ c.37.1.11 (A:) ATP:cor 26.8 27 0.0019 35.3 4.9 52 640-691 88-143 (157)
108 d1g6oa_ c.37.1.11 (A:) Hexamer 26.4 55 0.004 36.4 8.0 123 532-695 155-278 (323)
109 d1r7ra3 c.37.1.20 (A:471-735) 26.0 11 0.00082 41.0 1.9 24 544-567 42-65 (265)
110 d1byka_ c.93.1.1 (A:) Trehalos 25.2 1.6E+02 0.012 30.3 11.4 90 1092-1182 18-117 (255)
111 d1tf7a1 c.37.1.11 (A:14-255) C 24.7 42 0.0031 34.0 6.2 48 542-591 25-72 (242)
112 d1byia_ c.37.1.10 (A:) Dethiob 22.8 34 0.0024 34.6 4.9 31 547-580 6-36 (224)
113 d1ofha_ c.37.1.20 (A:) HslU {H 22.6 19 0.0014 40.0 3.0 25 542-566 48-72 (309)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=3.7e-44 Score=431.64 Aligned_cols=173 Identities=36% Similarity=0.634 Sum_probs=163.9
Q ss_pred ccchHHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEec
Q 000139 1064 DCGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILST 1141 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLST 1141 (2062)
.|||+.+|..+|..++ ..|+||||||||+.++++|+.+|...|+.|++|+|+|+..+|+.++++||.+ ...+|||+|+
T Consensus 99 ~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~ 178 (346)
T d1z3ix1 99 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 178 (346)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecc
Confidence 4899999999999885 6689999999999999999999999999999999999999999999999985 4568999999
Q ss_pred cccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000139 1142 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1221 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~ 1221 (2062)
++||+||||++|++|||||++|||+.+.||+||||||||+++|+||||++.+||||+|++++..|+.|.+.|+++++...
T Consensus 179 ~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~ 258 (346)
T d1z3ix1 179 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVE 258 (346)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCC
T ss_pred hhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred cccccCChhhhhcCC
Q 000139 1222 EFFKKLDPMELFSGH 1236 (2062)
Q Consensus 1222 ~~fk~~di~eLF~~~ 1236 (2062)
..|+..++.+||+..
T Consensus 259 ~~~~~~~l~~lf~~~ 273 (346)
T d1z3ix1 259 RHFSLGELRELFSLN 273 (346)
T ss_dssp CSSCHHHHHHHTCCC
T ss_pred hcCCHHHHHHHhcCC
Confidence 788888899999754
No 2
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=6e-42 Score=389.73 Aligned_cols=225 Identities=36% Similarity=0.667 Sum_probs=200.9
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHH
Q 000139 516 KFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLK 595 (2062)
Q Consensus 516 ~vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkk 595 (2062)
-.|..++.+|||||++||.||..+...+.|||||||||||||+|+|+++.++.. .+..+++|||||.+++.||..|+.+
T Consensus 4 ~~P~~~~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~-~~~~~~~LIv~p~~l~~~W~~e~~~ 82 (230)
T d1z63a1 4 LEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSK 82 (230)
T ss_dssp CCCCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHH
T ss_pred cCchhhhcchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhh-cccccccceecchhhhhHHHHHHHh
Confidence 358889999999999999999999999999999999999999999999988865 4556799999999999999999999
Q ss_pred HCCCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCc
Q 000139 596 WCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 675 (2062)
Q Consensus 596 w~P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~ 675 (2062)
|++...+..+++..... ....++|+||+|..+.... .+...+|++||+||||++||..+.+++++..+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~--------~~~~~~vvi~~~~~~~~~~-~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~ 153 (230)
T d1z63a1 83 FAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVLLRDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 153 (230)
T ss_dssp HCTTSCEEECSSSTTSC--------CGGGSSEEEEEHHHHTTCH-HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred hcccccceeeccccchh--------hccCcCEEEeeHHHHHhHH-HHhcccceEEEEEhhhcccccchhhhhhhhhhccc
Confidence 99999888876654332 2246789999999998764 47788999999999999999999999999999999
Q ss_pred eEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhh--Hh
Q 000139 676 RRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD--VE 753 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~D--Ve 753 (2062)
+||+|||||++|++.|||++++||.|+.|+++..|...|++|+.. .......+|+.+|+|||+||+|.| |.
T Consensus 154 ~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~-------~~~~~~~~L~~~l~~~~lRr~K~d~~v~ 226 (230)
T d1z63a1 154 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKK-------GDNMAKEELKAIISPFILRRTKYDKAII 226 (230)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHT-------TCHHHHHHHHHHHTTTEECCCTTCHHHH
T ss_pred eEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhc-------cCHHHHHHHHHHhhccEEEEecCCccHh
Confidence 999999999999999999999999999999999999999887632 234567789999999999999999 67
Q ss_pred hcCC
Q 000139 754 KQLP 757 (2062)
Q Consensus 754 kqLP 757 (2062)
++||
T Consensus 227 ~dLP 230 (230)
T d1z63a1 227 NDLP 230 (230)
T ss_dssp TTSC
T ss_pred hcCC
Confidence 7888
No 3
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=7.7e-42 Score=403.59 Aligned_cols=232 Identities=30% Similarity=0.447 Sum_probs=195.0
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHh-----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC----CCcEEEEecCCcH
Q 000139 516 KFPFLLKFPLREYQHIGLDWLVTMY-----EKRLNGILADEMGLGKTIMTIAMLAHLACEKGI----WGPHLIVVPTSVM 586 (2062)
Q Consensus 516 ~vP~lLk~~LRpYQ~~GL~WLv~l~-----~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~----~Gp~LIVvPtSLL 586 (2062)
.+|+.|...|||||++||+||+.++ ..+.|||||||||||||+|+|+++.++...... .+++|||||++++
T Consensus 47 ~~~p~l~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~ 126 (298)
T d1z3ix2 47 VVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLV 126 (298)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHH
T ss_pred eEChhhhccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhh
Confidence 3566778899999999999999865 356789999999999999999999998876543 3469999999999
Q ss_pred HHHHHHHHHHCCC-CeEEEEeCChhhH-Hhhhhcc----CCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCC
Q 000139 587 LNWETEFLKWCPA-FKILTYFGSAKER-KFKRQGW----LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKN 660 (2062)
Q Consensus 587 ~QW~~Efkkw~P~-lkVl~y~Gs~ker-k~~r~gw----~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN 660 (2062)
.||..||.+|++. ..++.++|..+.. ......+ .....++|+|+||..+..+...+...+|++||+||||++||
T Consensus 127 ~qW~~Ei~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 127 RNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHHhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeeccccccccc
Confidence 9999999999975 5666666655433 2222222 22345789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCc-----ccccccccHHHHHH
Q 000139 661 WKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGM-----VEGQEKVNKEVVDR 735 (2062)
Q Consensus 661 ~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~-----~eg~~~~n~~~i~r 735 (2062)
.+|++++++..+++.+||+|||||++|++.|||++++||.|+.|++...|.++|+.|+... .+.........+.+
T Consensus 207 ~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~l~~ 286 (298)
T d1z3ix2 207 SDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (298)
T ss_dssp TCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887421 12222334567889
Q ss_pred HHHhhhhhhhhh
Q 000139 736 LHNVLRPFILRR 747 (2062)
Q Consensus 736 LhkvLrpFmLRR 747 (2062)
|+.+|+||||||
T Consensus 287 L~~~l~~~~lRR 298 (298)
T d1z3ix2 287 LISIVNRCLIRR 298 (298)
T ss_dssp HHHHHHHHEECC
T ss_pred HHHHhhhheeCC
Confidence 999999999998
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=1.3e-39 Score=374.13 Aligned_cols=172 Identities=33% Similarity=0.488 Sum_probs=146.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHc-CCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY-GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~-Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
|+|+..|..+|..+...|+||||||+|+.++++|+.+|... |+.|.+|+|+++..+|+.++++|++++.+.|||+|+++
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 78999999999999999999999999999999999999754 99999999999999999999999999999999999999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEF 1223 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~~~ 1223 (2062)
||+||||+.|++|||||++|||..+.||+||+||+||+++|+||+|++.+||||+|++++..|+.+.+.++++++-....
T Consensus 148 ~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~~~~~~~ 227 (244)
T d1z5za1 148 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITE 227 (244)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHT
T ss_pred cccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887655555
Q ss_pred cccCChhhhhcCC
Q 000139 1224 FKKLDPMELFSGH 1236 (2062)
Q Consensus 1224 fk~~di~eLF~~~ 1236 (2062)
++..++++||+..
T Consensus 228 ~~~~~l~~l~~~~ 240 (244)
T d1z5za1 228 LSTEELRKVIELS 240 (244)
T ss_dssp SCHHHHHHHHSCC
T ss_pred CCHHHHHHHHccC
Confidence 5666677888743
No 5
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.76 E-value=2.1e-19 Score=199.02 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=110.2
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
..+.|+..|..+|... .++|+|||+++..+++.|...|. +..++|.++..+|+.+++.|+. +.+.| |++|+
T Consensus 76 ~~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~-~~~~v-Lv~~~ 146 (200)
T d2fwra1 76 NSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRA-IVSSQ 146 (200)
T ss_dssp SCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSS
T ss_pred CcHHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhc-CCeee-eeecc
Confidence 4467999999999874 57899999999999999887763 3457999999999999999986 56777 56899
Q ss_pred ccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcC-cEEEEEEEeCCC
Q 000139 1143 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTR-EVHIYRLISEST 1194 (2062)
Q Consensus 1143 AGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTR-dV~VYRLIse~T 1194 (2062)
++|+||||+.|++|||||++|||....||+||+||+||.+ .|+||.||+++|
T Consensus 147 ~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 147 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred hhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 9999999999999999999999999999999999999965 699999999998
No 6
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.75 E-value=1.4e-18 Score=202.31 Aligned_cols=134 Identities=18% Similarity=0.300 Sum_probs=117.3
Q ss_pred cccchHHHHHHHHHHhh--hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCC--------CHHHHHHHHHHHhcCC
Q 000139 1063 FDCGKLQELAILLRKLK--SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGST--------QPEERQTLMQRFNTNP 1132 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLk--s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsT--------s~eqRq~lmerFN~D~ 1132 (2062)
..++|+..|..+|.++. ..++||||||++..+++.+...|...|+++..++|.. +..+|+.+++.|++ +
T Consensus 140 ~~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~-g 218 (286)
T d1wp9a2 140 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-G 218 (286)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-T
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHc-C
Confidence 35689999999998774 4578999999999999999999999999999998853 34478999999987 4
Q ss_pred CceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHH
Q 000139 1133 KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1201 (2062)
Q Consensus 1133 ~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilk 1201 (2062)
.+.| |++|++||+||||++|++||+||++|||....|++||++| .+++.||.|++++|+||+++-
T Consensus 219 ~~~v-Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR---~~~~~~~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 219 EFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR---HMPGRVIILMAKGTRDEAYYW 283 (286)
T ss_dssp SCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS---CCCSEEEEEEETTSHHHHHHH
T ss_pred CCcE-EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCC---CCCCEEEEEEeCCCHHHHHHh
Confidence 5666 7889999999999999999999999999999997777766 557899999999999999874
No 7
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.75 E-value=1.9e-18 Score=192.48 Aligned_cols=137 Identities=25% Similarity=0.329 Sum_probs=108.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF 600 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~l 600 (2062)
..+||+||+++++++.. +.+|||+++||+|||+++++++..+ .+++|||||. +++.||..+|.+|.+.
T Consensus 68 ~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~~~~~~~- 136 (206)
T d2fz4a1 68 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIFGEE- 136 (206)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGGCGG-
T ss_pred CCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHHHhhccc-
Confidence 46799999999997753 5678999999999999998777543 3589999997 6888999999998654
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEE
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL 680 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLL 680 (2062)
.+..+.|..+ ....++|++|+.+......+. .+|++||+||||++++. ...+.+..+++.+||+|
T Consensus 137 ~~~~~~~~~~------------~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH~~~a~--~~~~i~~~~~~~~~lgL 201 (206)
T d2fz4a1 137 YVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGL 201 (206)
T ss_dssp GEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT--THHHHHHTCCCSEEEEE
T ss_pred chhhcccccc------------cccccccceehhhhhhhHhhC-CcCCEEEEECCeeCCcH--HHHHHHhccCCCcEEEE
Confidence 4555555322 234589999999887765554 47999999999999754 34556677889999999
Q ss_pred eccC
Q 000139 681 TGTP 684 (2062)
Q Consensus 681 TGTP 684 (2062)
|||+
T Consensus 202 TATl 205 (206)
T d2fz4a1 202 TATF 205 (206)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9997
No 8
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.69 E-value=3.6e-17 Score=190.76 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=118.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC-
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA- 599 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~- 599 (2062)
...||+||..++.+++. +.+|||...||+|||+++.+++..+.... .+++|||||+ +|+.||..+|.+|...
T Consensus 111 ~~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~~--~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp ECCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred ccccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhcc--cceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 46799999999999876 46799999999999999988877665532 2589999997 7999999999998643
Q ss_pred -CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-cCceE
Q 000139 600 -FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-NSKRR 677 (2062)
Q Consensus 600 -lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-~a~~R 677 (2062)
..+....+.... .+.......++|+|++.+......+. ..|++||+||||+++.. .....+..+ ++.+|
T Consensus 185 ~~~~~~~~~g~~~------~~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~~a~--~~~~il~~~~~~~~r 255 (282)
T d1rifa_ 185 HAMIKKIGGGASK------DDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGK--SISSIISGLNNCMFK 255 (282)
T ss_dssp GGGEEECSTTCSS------TTCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEE
T ss_pred cccceeecceecc------cccccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCCCch--hHHHHHHhccCCCeE
Confidence 333333322211 11122456799999999877654443 36899999999999742 223344445 68899
Q ss_pred EEEeccCCCCChHHHHHHHHHhCC
Q 000139 678 ILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 678 LLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
|+|||||-.... +.|.|..++.|
T Consensus 256 lGlTaT~~~~~~-~~~~l~g~~Gp 278 (282)
T d1rifa_ 256 FGLSGSLRDGKA-NIMQYVGMFGE 278 (282)
T ss_dssp EEECSSCCTTST-THHHHHHHHCE
T ss_pred EEEEeecCCCCc-ceEEEeeecCC
Confidence 999999965554 44667777665
No 9
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.67 E-value=1.4e-16 Score=172.58 Aligned_cols=131 Identities=23% Similarity=0.292 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
.-|+.+|..+|... .+.|||||++...+++.|..+|...|+.+..++|.++..+|..++..|+. +.+.+ |++|.++
T Consensus 17 ~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~-~~~~i-lv~Td~~ 92 (171)
T d1s2ma2 17 RQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRT-LVCSDLL 92 (171)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEESSCS
T ss_pred HHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhccc-Ccccc-ccchhHh
Confidence 45999999999875 57899999999999999999999999999999999999999999999986 45665 6789999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1203 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka 1203 (2062)
+.|||++.+++||+||+||||....|++||++|.|++. .+|.|++++ |..+++..
T Consensus 93 ~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~v~~~--e~~~~~~i 147 (171)
T d1s2ma2 93 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN--DRFNLYKI 147 (171)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG--GHHHHHHH
T ss_pred hhccccceeEEEEecCCcchHHHHHHHhhhcccCCCcc--EEEEEeCHH--HHHHHHHH
Confidence 99999999999999999999999999999999999875 456788876 55666543
No 10
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=2e-16 Score=170.89 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.+-|+..|..+|..+ .+.|+|||+++..+.+.|..+|...|+.+..++|+++..+|..+++.|+. +.+.| |++|.+
T Consensus 11 ~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~-g~~~i-Lv~T~~ 86 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNL 86 (168)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEESSC
T ss_pred hHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcc-cccee-eecccc
Confidence 468999999999876 46799999999999999999999999999999999999999999999985 66776 689999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
++.|||++.+++||+||++|||....|++||++|.|++..+ |.|++.. -|.+++....
T Consensus 87 ~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~~-~~~~~~~~i~ 144 (168)
T d1t5ia_ 87 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQ 144 (168)
T ss_dssp CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH-HHHHHHHHHH
T ss_pred ccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE--EEEECch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999987644 6677653 3666766543
No 11
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.63 E-value=1.1e-15 Score=162.72 Aligned_cols=129 Identities=20% Similarity=0.322 Sum_probs=112.9
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+..|..+|+. .+.|+|||++...+.+.|..+|...|+....++|.++..+|..++++|.. +.+.| |++|.++
T Consensus 14 ~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~-~~~~i-lv~T~~~ 88 (155)
T d1hv8a2 14 NERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRI-LIATDVM 88 (155)
T ss_dssp GGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSE-EEECTTH
T ss_pred HHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhc-cccee-eeehhHH
Confidence 4688888888753 56799999999999999999999999999999999999999999999986 45555 6889999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
+.|||++.+++||+||+||||....|++||++|.|++.. +|-|+.+. |+.+++.
T Consensus 89 ~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~--d~~~~~~ 142 (155)
T d1hv8a2 89 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK--AISIINRR--EYKKLRY 142 (155)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCE--EEEEECTT--SHHHHHH
T ss_pred hhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCce--EEEEEchH--HHHHHHH
Confidence 999999999999999999999999999999999998654 45577665 5555554
No 12
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.60 E-value=2.3e-15 Score=161.70 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=108.4
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
+..|+..|..+|..+ .+.|+|||+++..+.+.|...|..+|+....++|.++..+|..++++|+. +.+.| |+||.+
T Consensus 11 ~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~-~~~~i-Lv~Tdv 86 (162)
T d1fuka_ 11 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDL 86 (162)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEEEGG
T ss_pred cHHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhh-cccce-eecccc
Confidence 457999999999876 46799999999999999999999999999999999999999999999986 45665 789999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1144 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1144 GG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
++.|||++.+++||+||+||||....|++||++|.||.- .+|.|++.+
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g--~~i~~~~~~ 134 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNE 134 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETT
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCcc--EEEEEcCHH
Confidence 999999999999999999999999999999999999854 566778776
No 13
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.60 E-value=3.6e-15 Score=163.39 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=116.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCC--C
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCP--A 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P--~ 599 (2062)
.++|+||.++++++. +.|+|++..+|+|||++++.++....... .+++|||||+ .++.||..+|.++++ +
T Consensus 8 ~~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~~--~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HCCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHHS--CSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHhc--CCcEEEEcCchHHHHHHHHHHHHhhcccc
Confidence 357999999999874 35799999999999998887766555433 3689999997 688999999999974 5
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCChhhHHHHHH---HcccC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNWKSQRWQTL---LNFNS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~~Sk~~qaL---~~L~a 674 (2062)
.++..+++........ ..| ..++++++|++.+..... .+....+++||+||||++.+......... .....
T Consensus 81 ~~v~~~~~~~~~~~~~-~~~---~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~ 156 (200)
T d1wp9a1 81 EKIVALTGEKSPEERS-KAW---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (200)
T ss_dssp GGEEEECSCSCHHHHH-HHH---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred cceeeeecccchhHHH-Hhh---hcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCC
Confidence 7787777754433211 112 235699999998876522 23345789999999999987654333221 12244
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHhCC
Q 000139 675 KRRILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
.+.|+|||||- +...++-.++..|..
T Consensus 157 ~~~l~~SATp~-~~~~~~~~~~~~l~~ 182 (200)
T d1wp9a1 157 PLVIGLTASPG-STPEKIMEVINNLGI 182 (200)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTC
T ss_pred CcEEEEEecCC-CcHHHHHHHHhcCCc
Confidence 56899999994 344555555555543
No 14
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=1.4e-14 Score=156.49 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=115.7
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+.+|..+|+.. .+.|+|||++...+.+.+..+|...|+.+..++|.++..+|..+++.|+. +.+.+ |++|.++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~-g~~~i-Lv~Td~~ 94 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRV-LISTDVW 94 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECGGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhc-CCccE-Eeccchh
Confidence 46999999999875 56799999999999999999999999999999999999999999999986 45655 7899999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
+.|||+..+++||+||+|||+....|++||++|.|++- .+|.|++++ |..+++.
T Consensus 95 ~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G--~~i~~~~~~--d~~~~~~ 148 (168)
T d2j0sa2 95 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND--DIRILRD 148 (168)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG--GHHHHHH
T ss_pred cccccccCcceEEEecCCcCHHHHHhhhccccccCCCc--EEEEEECHH--HHHHHHH
Confidence 99999999999999999999999999999999999754 567788776 5555543
No 15
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.53 E-value=2.6e-14 Score=154.21 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+..|..+|... .+.|+|||+++..+.+.|..+|...|+++..|+|.++..+|..++++|.. +.+.| |++|.++
T Consensus 17 ~~K~~~L~~ll~~~--~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~-g~~~i-lv~Td~~ 92 (168)
T d2rb4a1 17 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKV-LITTNVC 92 (168)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSE-EEECCSC
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcC-Cceee-eechhhh
Confidence 46899999998654 45799999999999999999999999999999999999999999999986 56766 6799999
Q ss_pred ccccCcccCCEEEEecCCCC------hhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000139 1145 GVGINLVGADTVIFYDSDWN------PAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1202 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWN------Pa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkk 1202 (2062)
+.|||++.+++||+||.||+ +....|++||++|.|+ ...+|.|++.+ |+..+..
T Consensus 93 ~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~--~g~~i~~~~~~--d~~~l~~ 152 (168)
T d2rb4a1 93 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK--KGLAFNMIEVD--ELPSLMK 152 (168)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C--CEEEEEEECGG--GHHHHHH
T ss_pred hhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCC--ceEEEEEEcHH--HHHHHHH
Confidence 99999999999999999996 4668999999999996 56678899887 4445444
No 16
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.39 E-value=8.5e-13 Score=146.13 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG 1144 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG 1144 (2062)
..|+..|..+|... .+.++|||++.....+.|..+|...|+.+..++|+++..+|..+++.|.. +.+.| |++|.++
T Consensus 15 ~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~i-lvaTd~~ 90 (200)
T d1oywa3 15 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQI-VVATVAF 90 (200)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECTTS
T ss_pred CcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhc-ccceE-EEecchh
Confidence 45888888888764 46799999999999999999999999999999999999999999999986 56666 6889999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeC
Q 000139 1145 GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE 1192 (2062)
Q Consensus 1145 G~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse 1192 (2062)
|.|||+...++||+||+|||+....|++||++|.|+.-. .+-|++.
T Consensus 91 ~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--ai~~~~~ 136 (200)
T d1oywa3 91 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE--AMLFYDP 136 (200)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEE--EEEEECH
T ss_pred hhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCce--EEEecCH
Confidence 999999999999999999999999999999999997544 4445544
No 17
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.36 E-value=5.6e-13 Score=146.78 Aligned_cols=163 Identities=22% Similarity=0.192 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC-Ce
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA-FK 601 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~-lk 601 (2062)
.|+|||..++..+.. +.++||+..+|.|||..++..+..... ..+++|+|||+ .++.||...|++|++. .+
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~---~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhh---ccCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 589999999988764 778999999999999887544443332 23579999998 4889999999998874 56
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhh--hccCeeEEEEcCccccCChh--hHHHHHHHcc----c
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF--KRKKWKYLILDEAHLIKNWK--SQRWQTLLNF----N 673 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L--~r~~W~lVILDEAH~IKN~~--Sk~~qaL~~L----~ 673 (2062)
+..+.|....+. .....+.++++++..+....... .-..+++||+||+|++.+.. ......+..+ +
T Consensus 98 v~~~~~~~~~~~------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~ 171 (202)
T d2p6ra3 98 IGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (202)
T ss_dssp EEEECSSCBCCS------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred ceeeccCccccc------ccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCC
Confidence 666666544322 12246779999988776542211 12357899999999997643 2222233322 3
Q ss_pred CceEEEEeccCCCCChHHHHHHHHHhCCCCC
Q 000139 674 SKRRILLTGTPLQNDLMELWSLMHFLMPHIF 704 (2062)
Q Consensus 674 a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF 704 (2062)
..++|+|||| +.| +.+ +.+||....|
T Consensus 172 ~~~~l~lSAT-l~n-~~~---~~~~l~~~~~ 197 (202)
T d2p6ra3 172 ALRVIGLSAT-APN-VTE---IAEWLDADYY 197 (202)
T ss_dssp TCEEEEEECC-CTT-HHH---HHHHTTCEEE
T ss_pred CCcEEEEcCC-CCc-HHH---HHHHcCCCee
Confidence 4478999999 333 444 3577755443
No 18
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.32 E-value=8.9e-12 Score=135.77 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
+++.-|...+.+....++++|||+......+.|..+|+.+|+.+..++|.++..+|..++++|.+ +++.| |++|.+++
T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~-g~~~v-LVaTdv~~ 92 (181)
T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL-GKYDV-LVGINLLR 92 (181)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHH-TSCSE-EEESCCCS
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHC-CCCCE-EEehhHHH
Confidence 44444555555555678999999999999999999999999999999999999999999999986 66777 68899999
Q ss_pred cccCcccCCEEEEecCC-----CChhhHHHHHHhhhccCCc
Q 000139 1146 VGINLVGADTVIFYDSD-----WNPAMDQQAQDRCHRIGQT 1181 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~d-----WNPa~d~QA~gRahRIGQT 1181 (2062)
.||++..+++||+||+| +++....|++||++|.|+.
T Consensus 93 rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp SSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred ccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 99999999999999998 4677788999999999964
No 19
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.31 E-value=3.5e-12 Score=147.41 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=76.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEE---
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVI--- 1157 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVI--- 1157 (2062)
.+.++|||+...+..+.+...|+..|+.+..++|.+.... ...|.+ +... +|++|.+.+.|+|+ .+++||
T Consensus 177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~----~~~~~~-~~~~-~lvaT~~~~~G~~~-~~~~Vi~~~ 249 (305)
T d2bmfa2 177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSE----YIKTRT-NDWD-FVVTTDISEMGANF-KAERVIDPR 249 (305)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHH----GGGGGT-SCCS-EEEECGGGGTTCCC-CCSEEEECC
T ss_pred hCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHH----Hhhhhc-cchh-hhhhhHHHHhcCCC-CccEEEEcC
Confidence 4678999999999999999999999999999999986443 335554 3443 47889999999999 677765
Q ss_pred -------EecCC----------CChhhHHHHHHhhhccCCcCc
Q 000139 1158 -------FYDSD----------WNPAMDQQAQDRCHRIGQTRE 1183 (2062)
Q Consensus 1158 -------fyD~d----------WNPa~d~QA~gRahRIGQTRd 1183 (2062)
+||++ -++....|+.||++|.|+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 250 RCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred CceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 34443 357788999999999997664
No 20
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.27 E-value=3.9e-12 Score=129.55 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=81.1
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhc
Q 000139 539 MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQG 618 (2062)
Q Consensus 539 l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~g 618 (2062)
+++++.++||..+||+|||++++..+.......+ ..+||++|+..+.+|..+ +++...+-...+....
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~--~~vli~~p~~~l~~q~~~---~~~~~~~~~~~~~~~~------- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR--LRTLVLAPTRVVLSEMKE---AFHGLDVKFHTQAFSA------- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHH---HTTTSCEEEESSCCCC-------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcC--ceeeeeecchhHHHHHHH---Hhhhhhhhhccccccc-------
Confidence 4677889999999999999999876665554443 478999999655544433 3333333332222110
Q ss_pred cCCCCCceEEEEehhhhhh-chhhhhccCeeEEEEcCccccCChhhH-H--HHHHHcccCceEEEEeccC
Q 000139 619 WLKPNSFHVCITTYRLIIQ-DSKVFKRKKWKYLILDEAHLIKNWKSQ-R--WQTLLNFNSKRRILLTGTP 684 (2062)
Q Consensus 619 w~k~~~fdVVITSYe~l~~-d~~~L~r~~W~lVILDEAH~IKN~~Sk-~--~qaL~~L~a~~RLLLTGTP 684 (2062)
.......+.++++..+.. ........+|++||+||||++...... + ...+......+.++|||||
T Consensus 71 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred -ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 111223345555555433 333445568999999999998432211 1 1222234667899999999
No 21
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.24 E-value=6.3e-12 Score=141.63 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCC--
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAF-- 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~l-- 600 (2062)
.++++|+.++.-++. +.+.++...+|.|||+.++..+.++.. + .+.+|||+|+ .|+.||..+|++|+..+
T Consensus 43 ~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~-~--~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~ 115 (237)
T d1gkub1 43 EPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL-K--GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 115 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT-T--SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHH-h--cCeEEEEeccHHHHHHHHHHHHHHHHHcCC
Confidence 468999999887764 778999999999999877665555443 2 2579999998 58999999999987543
Q ss_pred ----eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHH--HHcc--
Q 000139 601 ----KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQT--LLNF-- 672 (2062)
Q Consensus 601 ----kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qa--L~~L-- 672 (2062)
.+..+++...... ..........++|+|+|+..+.+....+ .+|++|||||+|.+-.......+. +..+
T Consensus 116 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~Ilv~Tp~~l~~~~~~~--~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~~ 192 (237)
T d1gkub1 116 GTENLIGYYHGRIPKRE-KENFMQNLRNFKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKASKNVDKLLHLLGFHY 192 (237)
T ss_dssp SGGGSEEECCSSCCSHH-HHHHHHSGGGCSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTSTHHHHHHHHHTTEEE
T ss_pred ceEEEEeeeecccchhh-hhhhhccccccceeccChHHHHHhhhhc--CCCCEEEEEChhhhhhcccchhHHHHhcCChH
Confidence 2333444332211 1111112246789999999887765443 368999999999874433222222 2111
Q ss_pred ----------cCceEEEEeccCCCCChHHH
Q 000139 673 ----------NSKRRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 673 ----------~a~~RLLLTGTPLQNsL~EL 692 (2062)
.....+++|||+-...-..|
T Consensus 193 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l 222 (237)
T d1gkub1 193 DLKTKSWVGEARGCLMVSTATAKKGKKAEL 222 (237)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHH
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCcccHHHH
Confidence 12246889999754433333
No 22
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.22 E-value=5.8e-11 Score=128.10 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=95.9
Q ss_pred HHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCc
Q 000139 1071 LAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL 1150 (2062)
Q Consensus 1071 L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNL 1150 (2062)
|...+++....|.|+|||+...++.+.|..+|..+|++...|+|.++..+|+.++++|.+ +++.| |++|.+.+.|||+
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~-G~~~v-LVaT~v~~~GiDi 97 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYDC-LVGINLLREGLDI 97 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCSE-EEESCCCCTTCCC
T ss_pred HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHC-CCeEE-EEeeeeeeeeccC
Confidence 444445555679999999999999999999999999999999999999999999999986 67777 7899999999999
Q ss_pred ccCCEEEEecCCC-----ChhhHHHHHHhhhccCC
Q 000139 1151 VGADTVIFYDSDW-----NPAMDQQAQDRCHRIGQ 1180 (2062)
Q Consensus 1151 T~ADtVIfyD~dW-----NPa~d~QA~gRahRIGQ 1180 (2062)
..+++||+||++- ++....|++||+.|-|.
T Consensus 98 p~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~ 132 (174)
T d1c4oa2 98 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 132 (174)
T ss_dssp TTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred CCCcEEEEeccccccccchhHHHHHHhhhhhhcCC
Confidence 9999999999864 44668999999999876
No 23
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.19 E-value=1.4e-11 Score=126.86 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=84.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccC
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWL 620 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~ 620 (2062)
....+||...+|.|||++++.++. .. .+.+||+||+. +..||...|.+|+.......+.|...
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~----~~--~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~---------- 70 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA----AQ--GYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI---------- 70 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH----TT--TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE----------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH----Hc--CCcEEEEcChHHHHHHHHHHHHHHhhcccccccccccc----------
Confidence 345789999999999987655443 22 34799999984 77889999999876555544433221
Q ss_pred CCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-cc---CceEEEEeccC
Q 000139 621 KPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FN---SKRRILLTGTP 684 (2062)
Q Consensus 621 k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~---a~~RLLLTGTP 684 (2062)
.....++++++..+........ .+|++||+||+|++.......+..++. ++ ....++|||||
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 -TTGSPITYSTYGKFLADGGCSG-GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp -CCCCSEEEEEHHHHHHTTGGGG-CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred -ccccceEEEeeeeeccccchhh-hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 1233477888887765543322 468999999999986544333333332 32 33689999999
No 24
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.12 E-value=4.2e-11 Score=131.74 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCCCe
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPAFK 601 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~lk 601 (2062)
..|||||.+++.-++. +.++|+...+|.|||+..+..+.. ..+.+++|+|. .+..||..+|+.+.....
T Consensus 24 ~~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~ 93 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAA 93 (206)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhccccc
Confidence 3689999999987654 678999999999999876433321 24689999998 578889999998864433
Q ss_pred EEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc--hhhhhccCeeEEEEcCccccCChhhH---H----HHHHHcc
Q 000139 602 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD--SKVFKRKKWKYLILDEAHLIKNWKSQ---R----WQTLLNF 672 (2062)
Q Consensus 602 Vl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d--~~~L~r~~W~lVILDEAH~IKN~~Sk---~----~qaL~~L 672 (2062)
.....+........... ...+..+++++|...+... ...+....+.+||+||||.+...... . ...+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~ 172 (206)
T d1oywa2 94 CLNSTQTREQQLEVMTG-CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (206)
T ss_dssp EECTTSCHHHHHHHHHH-HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC
T ss_pred ccccccccccchhHHHH-HhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhC
Confidence 33333333332222111 1124567888888777654 33455567899999999998764321 1 1122233
Q ss_pred cCceEEEEeccCCCCChHHHHHHHHHhCC
Q 000139 673 NSKRRILLTGTPLQNDLMELWSLMHFLMP 701 (2062)
Q Consensus 673 ~a~~RLLLTGTPLQNsL~ELwSLL~FL~P 701 (2062)
.....++||||+-..-..++...|++-.|
T Consensus 173 ~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 173 PTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 45678999999633223456666555444
No 25
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.02 E-value=2.6e-10 Score=130.63 Aligned_cols=158 Identities=21% Similarity=0.311 Sum_probs=113.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCC
Q 000139 522 KFPLREYQHIGLDWLVTMYEK--RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCP 598 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~--~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P 598 (2062)
.+.|-+-|..+++-+..-+.. ..+-+|.-++|.|||++++..+...... | .-++|+||+. |..|+...|++|++
T Consensus 81 PFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~-g--~q~~~m~Pt~~La~Qh~~~~~~~f~ 157 (264)
T d1gm5a3 81 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-G--FQTAFMVPTSILAIQHYRRTVESFS 157 (264)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-T--SCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred cccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc-c--cceeEEeehHhhhHHHHHHHHHhhh
Confidence 356889999999988776543 4577999999999999998887766543 3 3689999995 67889999999997
Q ss_pred --CCeEEEEeCChhh--HHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHH-ccc
Q 000139 599 --AFKILTYFGSAKE--RKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL-NFN 673 (2062)
Q Consensus 599 --~lkVl~y~Gs~ke--rk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~-~L~ 673 (2062)
+.++.+++|.... +.....+ ...+..+|+|-|+..+..+.. | .+..+||+||=|++.-.. + ..+. .-+
T Consensus 158 ~~~~~v~~l~~~~~~~~r~~~~~~-~~~g~~~iiIGThsl~~~~~~-f--~~LglviiDEqH~fgv~Q--r-~~l~~~~~ 230 (264)
T d1gm5a3 158 KFNIHVALLIGATTPSEKEKIKSG-LRNGQIDVVIGTHALIQEDVH-F--KNLGLVIIDEQHRFGVKQ--R-EALMNKGK 230 (264)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHH-HHSSCCCEEEECTTHHHHCCC-C--SCCCEEEEESCCCC--------CCCCSSSS
T ss_pred hccccceeeccccchHHHHHHHHH-HHCCCCCEEEeehHHhcCCCC-c--cccceeeeccccccchhh--H-HHHHHhCc
Confidence 4678888876543 2222221 234678999999998875533 2 245899999999984211 1 1111 113
Q ss_pred CceEEEEeccCCCCCh
Q 000139 674 SKRRILLTGTPLQNDL 689 (2062)
Q Consensus 674 a~~RLLLTGTPLQNsL 689 (2062)
..+.|++||||+..++
T Consensus 231 ~~~~l~~SATPiprtl 246 (264)
T d1gm5a3 231 MVDTLVMSATPIPRSM 246 (264)
T ss_dssp CCCEEEEESSCCCHHH
T ss_pred CCCEEEEECCCCHHHH
Confidence 4578999999999875
No 26
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.85 E-value=9.4e-09 Score=115.56 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=112.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC-CcHHHHHHHHHHHCCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRL--NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT-SVMLNWETEFLKWCPA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~--gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt-SLL~QW~~Efkkw~P~ 599 (2062)
+.|-+-|..++.-+......+. +-+|.-++|.|||.+++..+..... . .+-++|+||+ .|..|+...|+++++.
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~-~--g~qv~~l~Pt~~La~Q~~~~~~~~~~~ 130 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-N--HKQVAVLVPTTLLAQQHYDNFRDRFAN 130 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-T--TCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH-c--CCceEEEccHHHhHHHHHHHHHHHHhh
Confidence 5678899999998877666444 6799999999999999888776653 2 2478999999 4678899999999876
Q ss_pred --CeEEEEeCChhh--HHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc-ccC
Q 000139 600 --FKILTYFGSAKE--RKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN-FNS 674 (2062)
Q Consensus 600 --lkVl~y~Gs~ke--rk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~-L~a 674 (2062)
.++..++|.... +...... ...+..+|+|-|+..+..... -.+..+||+||=|++.- +.-..++. ...
T Consensus 131 ~~~~v~~l~~~~~~~~~~~~~~~-~~~g~~~iviGths~l~~~~~---f~~LgLiIiDEeH~fg~---kQ~~~l~~~~~~ 203 (233)
T d2eyqa3 131 WPVRIEMISRFRSAKEQTQILAE-VAEGKIDILIGTHKLLQSDVK---FKDLGLLIVDEEHRFGV---RHKERIKAMRAN 203 (233)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHH-HHTTCCSEEEECTHHHHSCCC---CSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred CCCEEEeccCcccchhHHHHHHH-HhCCCCCEEEeehhhhccCCc---cccccceeeechhhhhh---HHHHHHHhhCCC
Confidence 467777775442 2222211 234677899999988865432 24679999999998742 22222222 244
Q ss_pred ceEEEEeccCCCCCh
Q 000139 675 KRRILLTGTPLQNDL 689 (2062)
Q Consensus 675 ~~RLLLTGTPLQNsL 689 (2062)
.+.|++||||+..++
T Consensus 204 ~~~l~~SATPiprtl 218 (233)
T d2eyqa3 204 VDILTLTATPIPRTL 218 (233)
T ss_dssp SEEEEEESSCCCHHH
T ss_pred CCEEEEecchhHHHH
Confidence 589999999998654
No 27
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.82 E-value=1.5e-10 Score=131.53 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec---
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST--- 1141 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST--- 1141 (2062)
.-|+..|..+|+++ |.++|||++...+++.|..+|..+ ++|+++..+|..++++|.. +.+.|+|.++
T Consensus 11 ~~~~~~l~~~l~~~---~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~-g~~~vLVaT~a~~ 80 (248)
T d1gkub2 11 DESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVE-GEIDHLIGTAHYY 80 (248)
T ss_dssp CCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHH-TSCSEEEEECC--
T ss_pred chHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHh-CCCeEEEEecccc
Confidence 44788888888754 678999999999999999999753 7899999999999999986 6777755543
Q ss_pred cccccccCccc-CCEEEEecCCCChhhHHHHHHhhhccCC
Q 000139 1142 RSGGVGINLVG-ADTVIFYDSDWNPAMDQQAQDRCHRIGQ 1180 (2062)
Q Consensus 1142 rAGG~GLNLT~-ADtVIfyD~dWNPa~d~QA~gRahRIGQ 1180 (2062)
..++.|||++. .++||+||+||++ |++||++|.|+
T Consensus 81 ~v~~rGlDip~~v~~VI~~d~P~~~----~r~gR~~R~g~ 116 (248)
T d1gkub2 81 GTLVRGLDLPERIRFAVFVGCPSFR----VTIEDIDSLSP 116 (248)
T ss_dssp ----CCSCCTTTCCEEEEESCCEEE----EECSCGGGSCH
T ss_pred chhhhccCccccccEEEEeCCCcch----hhhhhhhccCc
Confidence 46789999985 9999999999988 67899999995
No 28
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.70 E-value=3.8e-08 Score=108.62 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=104.3
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC--CCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC--PAF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~--P~l 600 (2062)
.+.|.|..++..++. .+.+.|+...+|.|||+..+..+..... .+.....||+||+. +..|+...+..++ .+.
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccc-cccCcceEEEeeccccchhhhhhhhhhcccCCe
Confidence 367899999987765 2346788889999999977665554322 22223579999995 6777888887765 346
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCC--hhhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L~-a~ 675 (2062)
++..++|.......... + .+.+|+|+|...+.... ..+.-.+..+||+||||++-+ ......+.+..++ ..
T Consensus 102 ~v~~~~g~~~~~~~~~~-l---~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~ 177 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIKA-L---KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 177 (208)
T ss_dssp CEEEECTTSCHHHHHHH-H---HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred EEEEeeCCCChHHHHHh-c---CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCC
Confidence 78888886543332211 1 24689999987765432 122334568999999998743 3344555555564 35
Q ss_pred eEEEEeccCCCCChHH
Q 000139 676 RRILLTGTPLQNDLME 691 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~E 691 (2062)
+.+++|||. .+.+.+
T Consensus 178 Q~i~~SAT~-~~~v~~ 192 (208)
T d1hv8a1 178 RILLFSATM-PREILN 192 (208)
T ss_dssp EEEEECSSC-CHHHHH
T ss_pred eEEEEEccC-CHHHHH
Confidence 678899994 344343
No 29
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.70 E-value=2.4e-09 Score=93.12 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=41.7
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
+|+||++||++|..+|++||+ ||..||..| . .|++.||++||..++
T Consensus 3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l---~--------~Rt~~qc~~Rw~~~L 49 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL---K--------GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS---T--------TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH---C--------CCCHHHHHHHHHhhC
Confidence 689999999999999999996 899999977 2 399999999999764
No 30
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.69 E-value=1e-08 Score=106.68 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEec
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYD 1160 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD 1160 (2062)
.+.|+|||++..++.+.|...|...|+....++|.++.. .|.. +... +|++|.+++.||| ...+.||+||
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~-~~~~-vlvaTd~~~~GiD-~~v~~Vi~~~ 103 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPT-NGDV-VVVATDALMTGFT-GDFDSVIDCN 103 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTT-SSCE-EEEESSSSCSSSC-CCBSEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhh-hhcc-eeehhHHHHhccc-cccceEEEEE
Confidence 456999999999999999999999999999999999844 3443 4444 4789999999999 8899999865
Q ss_pred ----CCCChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1161 ----SDWNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1161 ----~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+|+++....|++||+.| |+.- +|.||+++
T Consensus 104 ~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 104 TSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp EETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred ecCCCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 58899999999999999 8665 48888765
No 31
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.67 E-value=5.9e-09 Score=89.97 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=42.0
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
++.||++||++|..+|+.||+ ||..||..| + .|++.||++||..++.
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~---~--------~Rt~~qcr~Rw~~~L~ 48 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL---P--------NRTDVQCQHRWQKVLN 48 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS---T--------TCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH---C--------CCCHHHHHHHHHhhCC
Confidence 368999999999999999997 899999977 2 3999999999998763
No 32
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.66 E-value=8e-09 Score=89.84 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=41.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
.++||++||+.|+.+|++||+ ||..|+..+ + ...|++.+|+.||++|.
T Consensus 2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~---~------~~~Rt~~q~r~Rw~nl~ 50 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY---K------FNNRTSVMLKDRWRTMK 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---C------CSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhc---C------CCCCCHHHHHHHHHHHH
Confidence 579999999999999999997 999999754 1 13499999999999975
No 33
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.65 E-value=6.7e-08 Score=106.64 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC---CC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC---PA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~---P~ 599 (2062)
.+.|.|..++-.++. +.+.|+...+|.|||+..+.-+.............||+||+. +..|....+..++ +.
T Consensus 23 ~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 478999999988875 788999999999999875544333222222223579999995 6666777776666 44
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh---hhHHHHHHHcc-c
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW---KSQRWQTLLNF-N 673 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~---~Sk~~qaL~~L-~ 673 (2062)
.++.+++|........+.- .....+|+|+|...+..... .+.-.+..++|+||||++-.. .......+..+ +
T Consensus 99 ~~~~~~~g~~~~~~~~~~l--~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~ 176 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEEVL--KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176 (207)
T ss_dssp CCEEEESCCSCHHHHHHHH--HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceeEEEeccccHHHHHHHH--HhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCC
Confidence 5677777765433222211 11457899999998876532 223345679999999987542 22233334444 3
Q ss_pred CceEEEEeccCCCCChHHH
Q 000139 674 SKRRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 674 a~~RLLLTGTPLQNsL~EL 692 (2062)
....+++||| +.+++.++
T Consensus 177 ~~Q~il~SAT-~~~~v~~l 194 (207)
T d1t6na_ 177 EKQVMMFSAT-LSKEIRPV 194 (207)
T ss_dssp SSEEEEEESC-CCTTTHHH
T ss_pred CCEEEEEeee-CCHHHHHH
Confidence 4567888999 44555554
No 34
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.60 E-value=1e-07 Score=105.01 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc-HHHHHHHHHHH---CCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV-MLNWETEFLKW---CPA 599 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL-L~QW~~Efkkw---~P~ 599 (2062)
.+.|-|..++-.++. +.+.|+...+|.|||+..+.-+.............||+||+.. ..|=...+.++ +..
T Consensus 25 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 478999999988775 7889999999999998755444333222333446899999964 44444555544 455
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC--hhhHHHHHHHcc-cC
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNF-NS 674 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L-~a 674 (2062)
..+....|.......... -....+|+|+|...+..... .+......+||+||||.+-+ +.......+..+ +.
T Consensus 101 ~~~~~~~g~~~~~~~~~~---l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~ 177 (206)
T d1veca_ 101 AKVMATTGGTNLRDDIMR---LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHHHH---TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred cccccccCCccHHHHHHH---HHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCCC
Confidence 677777666544332221 12467899999988765422 23334568999999998865 345555556666 44
Q ss_pred ceEEEEeccC
Q 000139 675 KRRILLTGTP 684 (2062)
Q Consensus 675 ~~RLLLTGTP 684 (2062)
..++++|||-
T Consensus 178 ~Q~~l~SAT~ 187 (206)
T d1veca_ 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEEecC
Confidence 5788999994
No 35
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.59 E-value=9.3e-08 Score=106.78 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHC--CCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWC--PAF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~--P~l 600 (2062)
.+.|.|..++-+++. +.+.|+...+|.|||+..+.-+.............||+||+. +..|-..++.+++ .++
T Consensus 39 ~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i 114 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114 (222)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccce
Confidence 368999999998875 788999999999999865544433322223333579999996 4555566677776 457
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhch--hhhhccCeeEEEEcCccccCCh--hhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDS--KVFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~--~~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a~ 675 (2062)
++..++|..........- ..+.+|+|+|...+.... ..+.-....++|+||||++-+. .......+..++ ..
T Consensus 115 ~~~~~~g~~~~~~~~~~l---~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~ 191 (222)
T d2j0sa1 115 QCHACIGGTNVGEDIRKL---DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 191 (222)
T ss_dssp CEEEECTTSCHHHHHHHH---HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEeecccchhhHHHh---ccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCC
Confidence 787777765443322211 124689999998876532 2223345679999999999764 444555566664 45
Q ss_pred eEEEEeccC
Q 000139 676 RRILLTGTP 684 (2062)
Q Consensus 676 ~RLLLTGTP 684 (2062)
..+++|||-
T Consensus 192 Q~ilfSAT~ 200 (222)
T d2j0sa1 192 QVVLISATL 200 (222)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEEeC
Confidence 688899994
No 36
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.59 E-value=6.2e-08 Score=106.60 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=89.8
Q ss_pred HHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH--------------------------------cCCcEEEecCCCCH
Q 000139 1071 LAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--------------------------------YGYTYMRLDGSTQP 1118 (2062)
Q Consensus 1071 L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~--------------------------------~Gi~y~RLDGsTs~ 1118 (2062)
+..++.++...|+.+|||+...+....+...|.. +|+ ..++|+++.
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GI--a~hh~~l~~ 106 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA--AFHHAGLLN 106 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC--CEECTTSCH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccH--HHHHHHhhh
Confidence 3445566666789999999987655444333321 344 457999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEE-------ecCCCChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1119 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF-------YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1119 eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIf-------yD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
++|..+.+.|+. +.+.| |++|.+.+.|||+...+.||. ++.++++....|..|||+|.|+...-.+|-++.
T Consensus 107 ~~r~~ie~~f~~-g~i~v-lvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~ 184 (201)
T d2p6ra4 107 GQRRVVEDAFRR-GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 184 (201)
T ss_dssp HHHHHHHHHHHT-TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred hhHHHHHHHHhC-CCceE-EEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeC
Confidence 999999999985 67888 678899999999985555553 445678999999999999999987777776655
Q ss_pred CC
Q 000139 1192 ES 1193 (2062)
Q Consensus 1192 e~ 1193 (2062)
+.
T Consensus 185 ~~ 186 (201)
T d2p6ra4 185 KR 186 (201)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 37
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=98.54 E-value=2.7e-07 Score=103.87 Aligned_cols=167 Identities=17% Similarity=0.271 Sum_probs=111.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHH-HHHHhc--------CCCCcEEEEecCC-cHHHHHHH
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLA-HLACEK--------GIWGPHLIVVPTS-VMLNWETE 592 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa-~L~~~~--------g~~Gp~LIVvPtS-LL~QW~~E 592 (2062)
..+.|.|..++-.++. +.+.++...+|.|||+.-+.-+. ++.... ......||+||+. ++.|...+
T Consensus 42 ~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~ 117 (238)
T d1wrba1 42 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117 (238)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchhee
Confidence 3578999999988775 78999999999999997554443 333221 1122479999995 77888888
Q ss_pred HHHHCCC--CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccC--ChhhHHH
Q 000139 593 FLKWCPA--FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIK--NWKSQRW 666 (2062)
Q Consensus 593 fkkw~P~--lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IK--N~~Sk~~ 666 (2062)
+..+... +++..+.|........+. .....||+|+|...+..... .+.-..+.++|+||||++- ++.....
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~ 194 (238)
T d1wrba1 118 SQKFSLNTPLRSCVVYGGADTHSQIRE---VQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 194 (238)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHH---HSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred eeecccCCCcEEEEEeccchhhHHHhh---cccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHH
Confidence 8887644 677777776543322221 12467899999998876432 2333467899999999874 3445555
Q ss_pred HHHHccc-----CceEEEEeccCCCCChHHHHHHHHHhC
Q 000139 667 QTLLNFN-----SKRRILLTGTPLQNDLMELWSLMHFLM 700 (2062)
Q Consensus 667 qaL~~L~-----a~~RLLLTGTPLQNsL~ELwSLL~FL~ 700 (2062)
..+..++ ....+++||| +..+ +..+.+-++
T Consensus 195 ~Il~~~~~~~~~~~Q~il~SAT-~~~~---v~~l~~~~~ 229 (238)
T d1wrba1 195 KIIEESNMPSGINRQTLMFSAT-FPKE---IQKLAADFL 229 (238)
T ss_dssp HHHHSSCCCCGGGCEEEEEESS-CCHH---HHHHHHHHC
T ss_pred HHHHHhcCCCCCCCEEEEEeee-CCHH---HHHHHHHHC
Confidence 5665543 2367999999 4444 444444443
No 38
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.53 E-value=2.9e-08 Score=87.24 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=42.7
Q ss_pred CCCCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQR 1718 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~ 1718 (2062)
..+||++||..|..+|.+||+ ||..|+..+ . + ..|++.+|++||++|+..
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~---~----~--~~Rt~~q~k~Rwrn~~k~ 52 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNY---P----F--VNRTAVMIKDRWRTMKRL 52 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS---C----C--SSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHhhc---C----C--CCcCHHHHHHHHHHHhcC
Confidence 578999999999999999997 899999754 1 1 239999999999998764
No 39
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=1.7e-07 Score=104.29 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCC--C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPA--F 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~--l 600 (2062)
.+.+.|..++-.++. +.+.+++..+|.|||+..+.-+.............||+||+. +..|=..++.+++.. +
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 368999999988876 778999999999999877544444332223333479999996 566667777777643 4
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC--hhhHHHHHHHcccC-c
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFNS-K 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L~a-~ 675 (2062)
.+....|......... .......+|+|+|...+..... .+.-....+||+||||++-+ +.......+..++. .
T Consensus 110 ~~~~~~~~~~~~~~~~--~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 110 SCHACIGGTNVRAEVQ--KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp CEEEECC--CCCSTTT--SSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEeeecccchhHHHH--HHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 5555555433322221 1233567899999987765432 23334578999999999865 34455555666654 5
Q ss_pred eEEEEeccCCCCChHHH
Q 000139 676 RRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~EL 692 (2062)
.++++|||- .+++.++
T Consensus 188 Q~il~SAT~-~~~v~~~ 203 (218)
T d2g9na1 188 QVVLLSATM-PSDVLEV 203 (218)
T ss_dssp EEEEEESCC-CHHHHHH
T ss_pred eEEEEEecC-CHHHHHH
Confidence 678889985 3334443
No 40
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.50 E-value=2.1e-07 Score=102.05 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH----HHHHHHHHHHCC-
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM----LNWETEFLKWCP- 598 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL----~QW~~Efkkw~P- 598 (2062)
.+.|.|..++..++. +.+.|+...+|.|||+..+.-+.+...........++++|...+ .++.....+++.
T Consensus 23 ~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 23 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhccccc
Confidence 478999999998876 78899999999999986554444443333344566788776433 334444444443
Q ss_pred --CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHcc
Q 000139 599 --AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNF 672 (2062)
Q Consensus 599 --~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L 672 (2062)
...+....|......... ....+.+|+|+|...+..-.. .....+..++|+||||++-+. .......+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~ 175 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKALE---KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 175 (209)
T ss_dssp GGCCCEEEECCCSHHHHTTC---CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccccccchhhHHHHH---HhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHC
Confidence 234444444443322211 123568899999998865421 122245688999999998654 34445555566
Q ss_pred -cCceEEEEeccCCCCChHHH
Q 000139 673 -NSKRRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 673 -~a~~RLLLTGTPLQNsL~EL 692 (2062)
+....+++||| +.+.+.++
T Consensus 176 ~~~~Q~il~SAT-l~~~v~~l 195 (209)
T d1q0ua_ 176 PKDLQMLVFSAT-IPEKLKPF 195 (209)
T ss_dssp CTTCEEEEEESC-CCGGGHHH
T ss_pred CCCCEEEEEEcc-CCHHHHHH
Confidence 34578899999 45555544
No 41
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.50 E-value=2.4e-08 Score=84.93 Aligned_cols=46 Identities=17% Similarity=0.401 Sum_probs=42.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
++|||++||++|..+|.+||++|..|+-.| + .|++.+|+.||..++
T Consensus 1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~---~--------gRt~~~~knr~~~~l 46 (47)
T d1gv2a2 1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL---P--------GRTDNAIKNHWNSTM 46 (47)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTC---T--------TCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHhHc---C--------CCCHHHHHHHHHHHc
Confidence 479999999999999999999999999866 3 499999999999875
No 42
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.42 E-value=1e-06 Score=96.70 Aligned_cols=160 Identities=17% Similarity=0.088 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH-HHHHHHH--HHCCCC
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML-NWETEFL--KWCPAF 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~-QW~~Efk--kw~P~l 600 (2062)
.+.|-|..++--++. +.+.|+...+|.|||+..+.-+.............++++|...+. +=...+. ....++
T Consensus 23 ~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 23 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 478999999987776 778999999999999765433333222233344568888885433 3222222 233578
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCCh--hhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKNW--KSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN~--~Sk~~qaL~~L~-a~ 675 (2062)
++...+|.......... -....+|+|+|...+..... .+.-.+..++|+||||++-+. .......+..++ ..
T Consensus 99 ~~~~~~g~~~~~~~~~~---l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~ 175 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDILR---LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175 (206)
T ss_dssp CEEEECSSSCHHHHHHH---TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEeecCccchhhHHHH---hcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCC
Confidence 88888887654433221 12568899999998875533 222234678999999999763 445555555564 45
Q ss_pred eEEEEeccCCCCChHH
Q 000139 676 RRILLTGTPLQNDLME 691 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~E 691 (2062)
..+++||| +..++.+
T Consensus 176 Q~il~SAT-l~~~v~~ 190 (206)
T d1s2ma1 176 QSLLFSAT-FPLTVKE 190 (206)
T ss_dssp EEEEEESC-CCHHHHH
T ss_pred EEEEEEEe-CCHHHHH
Confidence 78899999 4444444
No 43
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.39 E-value=9.6e-08 Score=81.21 Aligned_cols=43 Identities=23% Similarity=0.484 Sum_probs=39.2
Q ss_pred CCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1662 VWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1662 ~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
+||.+||++|..+|..||. ||..||..| -.|+|.+|+.||..+
T Consensus 3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~-----------~~Rt~~Qcr~r~~~~ 46 (47)
T d1x41a1 3 SWTAQEEMALLEAVMDCGFGNWQDVANQM-----------CTKTKEECEKHYMKY 46 (47)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHHHH-----------TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCccHHHHHHHc-----------CCCCHHHHHHHHHHh
Confidence 5999999999999999997 899999988 239999999999865
No 44
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.36 E-value=7e-07 Score=98.73 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCC--C
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPA--F 600 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~--l 600 (2062)
.+.+.|..++.-++. +.+.++...+|.|||+..+.-+..........-..||+||+. +..|=...+...... .
T Consensus 32 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccccc
Confidence 478999999987765 788999999999999876543333222222333578899996 455555555555433 4
Q ss_pred eEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchh--hhhccCeeEEEEcCccccCC--hhhHHHHHHHccc-Cc
Q 000139 601 KILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK--VFKRKKWKYLILDEAHLIKN--WKSQRWQTLLNFN-SK 675 (2062)
Q Consensus 601 kVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~--~L~r~~W~lVILDEAH~IKN--~~Sk~~qaL~~L~-a~ 675 (2062)
.+....|........ .+ ....+|+|+|...+..... .+.-.+..++|+||||.+-+ +.....+.+..++ ..
T Consensus 108 ~~~~~~~~~~~~~~~--~~--~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~ 183 (212)
T d1qdea_ 108 KVHACIGGTSFVEDA--EG--LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 183 (212)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceeeEeeccchhHHH--HH--hcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCCC
Confidence 444444443322211 11 2356899999988766422 22334578999999999865 4455555566664 45
Q ss_pred eEEEEeccCCCCChHH
Q 000139 676 RRILLTGTPLQNDLME 691 (2062)
Q Consensus 676 ~RLLLTGTPLQNsL~E 691 (2062)
..+++|||- .+++.+
T Consensus 184 Q~vl~SAT~-~~~v~~ 198 (212)
T d1qdea_ 184 QVVLLSATM-PNDVLE 198 (212)
T ss_dssp EEEEEESSC-CHHHHH
T ss_pred eEEEEEeeC-CHHHHH
Confidence 688899994 444444
No 45
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.34 E-value=6.3e-08 Score=106.90 Aligned_cols=125 Identities=19% Similarity=0.282 Sum_probs=93.8
Q ss_pred cchHHHHHHHHHHhhhCCCeEEEEeCchHHHH---------HHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCC
Q 000139 1065 CGKLQELAILLRKLKSDGHRALIFTQMTKMLD---------ILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPK 1133 (2062)
Q Consensus 1065 SGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLD---------ILe~~L~~--~Gi~y~RLDGsTs~eqRq~lmerFN~D~~ 1133 (2062)
..|+..+...+++-...|++|.|.+......+ ..+.+++. .++++..++|.++.++|+.+|.+|.+ ++
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~-g~ 90 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE-GR 90 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT-TS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHC-CC
Confidence 45677777777777778888888776653332 22222222 26778889999999999999999986 66
Q ss_pred ceEEEEeccccccccCcccCCEEEEecCC-CChhhHHHHHHhhhccCCcCcEEEEEEEeCC
Q 000139 1134 IFLFILSTRSGGVGINLVGADTVIFYDSD-WNPAMDQQAQDRCHRIGQTREVHIYRLISES 1193 (2062)
Q Consensus 1134 IfVfLLSTrAGG~GLNLT~ADtVIfyD~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIse~ 1193 (2062)
+.| |+||.+.++|||++.|++||++|++ |..+...|..||++|-|++--+ |-|+.+.
T Consensus 91 ~~i-LVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~--~l~~~~~ 148 (206)
T d1gm5a4 91 YDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC--FLVVGDV 148 (206)
T ss_dssp SSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE--ECCCCSC
T ss_pred EEE-EEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeecccccee--Eeeeccc
Confidence 776 7889999999999999999999987 6899999999999999986554 3344443
No 46
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.34 E-value=1.6e-07 Score=107.53 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHH----------HHHHHHHhcCCCceEEEEeccc---ccccc
Q 000139 1082 GHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEER----------QTLMQRFNTNPKIFLFILSTRS---GGVGI 1148 (2062)
Q Consensus 1082 GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqR----------q~lmerFN~D~~IfVfLLSTrA---GG~GL 1148 (2062)
|.|+|||++.....+.|...|+..|++...++|+++.+.| ..+++.|.. +++.+++. |.+ |..|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~-G~~dvVVa-T~~~a~g~~gi 113 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFT-GDFDSVID-CNTCVTQTVDF 113 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CC-CCBSEEEE-CCEEEEEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhc-CCCcEEEE-EeehhccCCCC
Confidence 6799999999999999999999999999999999998776 456777764 56666544 444 55588
Q ss_pred CcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHH
Q 000139 1149 NLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1200 (2062)
Q Consensus 1149 NLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Il 1200 (2062)
++....+||.||.+.|+....||+||++| |..- +|+|+.-.|-++-++
T Consensus 114 Did~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t~p~~~l 161 (299)
T d1a1va2 114 SLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGERPSGMF 161 (299)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCCBCSCBC
T ss_pred CCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecCCCHHHHH
Confidence 99999999999999999999999999999 7332 567777666544443
No 47
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.29 E-value=2.8e-07 Score=82.29 Aligned_cols=46 Identities=15% Similarity=0.493 Sum_probs=41.4
Q ss_pred CCCCCChhhhHHHHHHHHhcCC----CchhHHHHhhccccCccccccccCChhhHHHHHHH
Q 000139 1659 SPDVWLPQEDAILCAVVHEYGP----NWSLVSDILYGMTASGYYRGRYRHPVHCCERFREL 1715 (2062)
Q Consensus 1659 ~~~~w~~~ed~~l~~~v~~~g~----nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~ 1715 (2062)
...+||++||++|..+|+.||. ||..||..| + .|++.+|++||+.|
T Consensus 11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l---~--------~Rt~~qc~~R~~~L 60 (60)
T d2cqra1 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV---P--------SKSKEDCIARYKLL 60 (60)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC---S--------SSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc---C--------CCCHHHHHHHHHHC
Confidence 4789999999999999999997 499999977 3 39999999999976
No 48
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=98.27 E-value=2.9e-07 Score=87.39 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCChhhhHHHHHHHHhcCC-CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHH
Q 000139 1662 VWLPQEDAILCAVVHEYGP-NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYIL 1721 (2062)
Q Consensus 1662 ~w~~~ed~~l~~~v~~~g~-nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~ 1721 (2062)
+||++||++|...|..||+ ||.+|+.-++ ..+-.|++++|+.||++|+.....
T Consensus 2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~-------~~~~~Rt~~qck~RWrn~l~~~~~ 55 (83)
T d2ckxa1 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAF-------DNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHC-------TTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCcccHHHHHHHHH-------hhccCCCHHHHHHHHHHHhhhhcc
Confidence 7999999999999999998 8999987541 123459999999999999976544
No 49
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=98.20 E-value=5.2e-07 Score=81.26 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=43.7
Q ss_pred CCCCChhhhHHHHHHHHhcCCC----chhHHHHhhccccCccccccccCChhhHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPN----WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRY 1719 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~n----w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~ 1719 (2062)
+.+||++||.+|..+|+.||.+ |..||..| + .|++.+|++||+.|++..
T Consensus 1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l---~--------gRt~~qc~~r~~~L~~di 53 (63)
T d2cjja1 1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV---E--------GRTPEEVKKHYEILVEDI 53 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS---T--------TCCHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHc---C--------CCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999984 99999988 3 399999999999988753
No 50
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.10 E-value=1.4e-06 Score=78.68 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPD 1725 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~ 1725 (2062)
...||++||.+|..+|..||.||..||..| -.|++.+|+.||..++.+..-....
T Consensus 2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-----------~~Rt~~q~k~ry~~~~~~~~k~~~~ 56 (65)
T d2cu7a1 2 SVKWTIEEKELFEQGLAKFGRRWTKISKLI-----------GSRTVLQVKSYARQYFKNKVKCGLD 56 (65)
T ss_dssp CCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-----------SSSCHHHHHHHHHHHHHHHSCSCTT
T ss_pred CCCCCHHHHHHHHHHHHHhcchHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 357999999999999999999999999988 3499999999999998876544443
No 51
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.00 E-value=8e-07 Score=84.73 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCCCChhhhHHHHHHHHhcCC------CchhHHHHhhccccCccccccccCChhhHHHHHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP------NWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1720 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~------nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~ 1720 (2062)
+++||++||++|..+|..||+ ||..||-.| -.|.+++|++||..++..-.
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l-----------pgRt~~qcr~Rw~~~L~p~l 56 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-----------PNHTGNSIRHRFRVYLSKRL 56 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-----------TTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc-----------CCCCHHHHHHHHHHHcCccc
Confidence 478999999999999999997 499999876 23999999999999887654
No 52
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=97.92 E-value=2.2e-05 Score=86.12 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=95.4
Q ss_pred HHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH--cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccccccc
Q 000139 1071 LAILLRKLKSDGHRALIFTQMTKMLDILEEFISL--YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGI 1148 (2062)
Q Consensus 1071 L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~--~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GL 1148 (2062)
+...|.+-...|++|.+.+.....++-+...|.. .++++..++|.++.+++..+|.+|.+ +++.| |+||....+||
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~-g~~~I-Lv~TtvIEvGi 97 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGI 97 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCE-EEESSTTGGGS
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHc-CCcce-EEEehhhhhcc
Confidence 3444444456788999999988888877777754 57899999999999999999999986 66776 67888999999
Q ss_pred CcccCCEEEEecCC-CChhhHHHHHHhhhccCCcCcEEEEEEEe
Q 000139 1149 NLVGADTVIFYDSD-WNPAMDQQAQDRCHRIGQTREVHIYRLIS 1191 (2062)
Q Consensus 1149 NLT~ADtVIfyD~d-WNPa~d~QA~gRahRIGQTRdV~VYRLIs 1191 (2062)
|+..|+++|+++.+ +--+...|--||++|=+.. -+.|-+..
T Consensus 98 DvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~--s~c~l~~~ 139 (211)
T d2eyqa5 98 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTP 139 (211)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEEC
T ss_pred CCCCCcEEEEecchhccccccccccceeeecCcc--ceEEEEec
Confidence 99999999999997 7899999999999996643 44454443
No 53
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.79 E-value=6.8e-06 Score=74.22 Aligned_cols=46 Identities=17% Similarity=0.412 Sum_probs=42.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
.+.||++||++|...|+.||.||..||..| ..|++.+|+.||..+.
T Consensus 5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~-----------~~kt~~q~~~~y~~~~ 50 (65)
T d2iw5b1 5 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-----------GNKSVVQVKNFFVNYR 50 (65)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHH-----------SSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCchHHHHHHHc-----------CCCCHHHHHHHHHHHH
Confidence 688999999999999999999999999988 2399999999998753
No 54
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=97.66 E-value=7.4e-05 Score=86.30 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEE---
Q 000139 1081 DGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVI--- 1157 (2062)
Q Consensus 1081 ~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVI--- 1157 (2062)
.+.++|||+......+.+...|..+|+.++.|+|.+...++++ |.+ +... +|++|...+.|||+ +.++||
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~-~~~~-~~~~t~~~~~~~~~-~~~~vid~g 107 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQ-KKPD-FILATDIAEMGANL-CVERVLDCR 107 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC-------------CCCS-EEEESSSTTCCTTC-CCSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhc-CCcC-EEEEechhhhceec-CceEEEecC
Confidence 4568999999999999999999999999999999999777664 433 3333 47999999999999 699887
Q ss_pred ------EecCC----------CChhhHHHHHHhhhccC
Q 000139 1158 ------FYDSD----------WNPAMDQQAQDRCHRIG 1179 (2062)
Q Consensus 1158 ------fyD~d----------WNPa~d~QA~gRahRIG 1179 (2062)
.||+. .+.+.-.|+.||++|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~ 145 (299)
T d1yksa2 108 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 145 (299)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC
Confidence 35542 56677789999999975
No 55
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.64 E-value=4.4e-05 Score=72.88 Aligned_cols=55 Identities=27% Similarity=0.544 Sum_probs=49.4
Q ss_pred CCCCChhhhHHHHHHHHhcCCC---chhHHHHhhccccCccccccccCChhhHHHHHHHHHHHHHhCCC
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPN---WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPD 1725 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~n---w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~~~~~~~~~ 1725 (2062)
..+|+.+||.+|.-.+.++|+. |..|+-.| ..|.+.+|++||+.||..+......
T Consensus 33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L-----------~~Rs~~qvr~Rf~~Lm~lf~~~~e~ 90 (95)
T d1ug2a_ 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQL-----------GNKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred cCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999997 99999999 5599999999999999988766543
No 56
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=97.63 E-value=0.0001 Score=78.42 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=96.6
Q ss_pred ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccc
Q 000139 1064 DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRS 1143 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrA 1143 (2062)
.-.|+.++...+.++...|..|||||........|..+|...|+++..|..... ++-..++. . .+....+.++|..
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~--Ag~~g~VtIATNm 91 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-E--AGQKGAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-T--TTSTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-h--ccCCCceeehhhH
Confidence 347999999999999999999999999999999999999999999999987653 33333333 2 2344455889999
Q ss_pred cccccCcc--------cCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEE
Q 000139 1144 GGVGINLV--------GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1186 (2062)
Q Consensus 1144 GG~GLNLT--------~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~V 1186 (2062)
+|.|.++. +.=+||.-..+-|...|.|..|||.|.|+.-....
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~ 142 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 142 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEE
Confidence 99998653 34489999999999999999999999998655433
No 57
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.57 E-value=2e-05 Score=71.79 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=40.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCCchhHHHHhhccccCccccccccCChhhHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRE 1714 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~nw~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~ 1714 (2062)
.++||++||++|...|..||.||..||..| ..|+..+|+.||-.
T Consensus 17 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~-----------~~rt~~q~~~~yy~ 60 (68)
T d1xc5a1 17 MNMWSEQEKETFREKFMQHPKNFGLIASFL-----------ERKTVAECVLYYYL 60 (68)
T ss_dssp TTCCCTTTHHHHHHHHHHTTSCSSSHHHHT-----------TTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCcHHHHHHHc-----------CCCCHHHHHHHHHH
Confidence 588999999999999999999999999988 44999999999964
No 58
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.95 E-value=0.027 Score=60.74 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecc
Q 000139 1063 FDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTR 1142 (2062)
Q Consensus 1063 ~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTr 1142 (2062)
....|+.++..-+..+...|.-|||.|..+..-++|...|...|+.+-.|..... ++-..+|.+ .++.-.+-++|.
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAq---AG~~GaVTIATN 90 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAV---AGRRGGVTVATN 90 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHT---TTSTTCEEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHh---cccCCcEEeecc
Confidence 3468999999999999999999999999999999999999999999999988654 333344443 234444467899
Q ss_pred ccccccCcc----------------------------------------------------cCCEEEEecCCCChhhHHH
Q 000139 1143 SGGVGINLV----------------------------------------------------GADTVIFYDSDWNPAMDQQ 1170 (2062)
Q Consensus 1143 AGG~GLNLT----------------------------------------------------~ADtVIfyD~dWNPa~d~Q 1170 (2062)
-+|.|.++. +.=+||--...=+--+|-|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 999998862 3348999999999999999
Q ss_pred HHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000139 1171 AQDRCHRIGQTREVHIYRLISESTIEENILKKAN 1204 (2062)
Q Consensus 1171 A~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~ 1204 (2062)
--|||+|.|..-....|- |+|+.++++-.
T Consensus 171 LRGRsGRQGDPGsSrFfl-----SLeDdLmr~F~ 199 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFYL-----SLGDELMRRFN 199 (219)
T ss_dssp HHHTSSGGGCCEEEEEEE-----ETTSHHHHHTT
T ss_pred ccccccccCCCccceeEE-----eccHHHHHHHC
Confidence 999999999765555443 66777776643
No 59
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=95.40 E-value=0.025 Score=63.25 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=95.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH----HHHHHHHHHC
Q 000139 522 KFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML----NWETEFLKWC 597 (2062)
Q Consensus 522 k~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~----QW~~Efkkw~ 597 (2062)
....++-|+.|.--|.. |.|.=.-+|=|||+++. +.+++..-.|. ++-||....-+. .|..-|-+|+
T Consensus 78 G~RhyDVQLiGgi~L~~------G~iaem~TGEGKTL~a~-l~a~l~al~g~--~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 78 GMFPFKVQLMGGVALHD------GNIAEMKTGEGKTLTST-LPVYLNALTGK--GVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp SCCCCHHHHHHHHHHHT------TSEEECCTTSCHHHHHH-HHHHHHHTTSS--CEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEehhHHHHHHHHHh------hhheeecCCCcchhHHH-HHHHHHHhcCC--CceEEecCccccchhhhHHhHHHHHc
Confidence 34568899999865533 56777889999998774 44444443333 444555444332 3999999998
Q ss_pred CCCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc---------hhhhhccCeeEEEEcCccccC-----C---
Q 000139 598 PAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---------SKVFKRKKWKYLILDEAHLIK-----N--- 660 (2062)
Q Consensus 598 P~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d---------~~~L~r~~W~lVILDEAH~IK-----N--- 660 (2062)
++.+-+........ .++.. -..+|+-.|-.-+.-| ........+.+.|+||+..|- +
T Consensus 149 -Glsvg~~~~~~~~~-~r~~~----Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpli 222 (273)
T d1tf5a3 149 -GLTVGLNLNSMSKD-EKREA----YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLI 222 (273)
T ss_dssp -TCCEEECCTTSCHH-HHHHH----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEE
T ss_pred -CCCccccccccCHH-HHHHH----hhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceE
Confidence 57766554332221 11111 2467887776655443 222334578999999988651 1
Q ss_pred -------hhhHHHHHHHcccCceEEEEeccCCCCChHHHHHHHH
Q 000139 661 -------WKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMH 697 (2062)
Q Consensus 661 -------~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwSLL~ 697 (2062)
..+-.++.++++- ++.-+||||- ...-.|||.+.+
T Consensus 223 isg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 223 ISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred eccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 1233345555443 5778899996 345677776654
No 60
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.55 E-value=0.047 Score=61.33 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcH---HHHHHHHHHHCCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVM---LNWETEFLKWCPA 599 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL---~QW~~Efkkw~P~ 599 (2062)
..-++-|+.|.--|. .|.|.=.-+|=|||+++.. .+++..-.|. |.|+|-|-.-|- ..|..-+.+|+ +
T Consensus 96 mRhyDVQLiGgi~l~------~g~iaem~TGEGKTL~a~l-~a~l~al~g~-~vhvvTvNdyLA~RDa~~m~~~y~~l-G 166 (288)
T d1nkta3 96 QRPFDVQVMGAAALH------LGNVAEMKTGEGKTLTCVL-PAYLNALAGN-GVHIVTVNDYLAKRDSEWMGRVHRFL-G 166 (288)
T ss_dssp CCCCHHHHHHHHHHH------TTEEEECCTTSCHHHHTHH-HHHHHHTTTS-CEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred ceeeeehhHHHHHHh------hhhhhcccCCCchhHHHHH-HHHHHHhcCC-CeEEEecCchhhhhhHHHHHHHHHHh-C
Confidence 345788999975553 3667788899999988744 3444333332 344444444443 23999999997 5
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhc---------hhhhhccCeeEEEEcCccccCC----------
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQD---------SKVFKRKKWKYLILDEAHLIKN---------- 660 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d---------~~~L~r~~W~lVILDEAH~IKN---------- 660 (2062)
+.|-+......... ++.. -..+|+-.|-.-+.-| ....-...+.++|+||+..|-=
T Consensus 167 lsvg~~~~~~~~~~-~~~~----Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiLiDeartpLiis 241 (288)
T d1nkta3 167 LQVGVILATMTPDE-RRVA----YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 241 (288)
T ss_dssp CCEEECCTTCCHHH-HHHH----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred CCcCcccccCChHH-HHHH----hhcccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEcccccccccccCceEec
Confidence 77766554433221 1111 2457888886665443 1223345789999999986521
Q ss_pred ---hhhHHHHHHHcccCceEEEEeccCCCCChHHHHH
Q 000139 661 ---WKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWS 694 (2062)
Q Consensus 661 ---~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ELwS 694 (2062)
..|-.++..+++ -.+.-+||||-.. ...||+.
T Consensus 242 ~~~~a~it~qn~fr~-y~kl~gmtgta~t-e~~E~~~ 276 (288)
T d1nkta3 242 NQTLATITLQNYFRL-YDKLAGMTGTAQT-EAAELHE 276 (288)
T ss_dssp EEEEEEECHHHHHTT-SSEEEEEESCCGG-GHHHHHH
T ss_pred cCCcchhhHHHHHHH-HHHHhCCcccHHH-HHHHHHH
Confidence 122233444443 3566778887542 3344443
No 61
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=94.36 E-value=0.045 Score=64.10 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHHH-HHHHHHH---CCC
Q 000139 525 LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLNW-ETEFLKW---CPA 599 (2062)
Q Consensus 525 LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL~QW-~~Efkkw---~P~ 599 (2062)
+-+.|+.++.-.+. +.-.||.-..|.|||.++..++..+..... ...++++++|+..-..= ...+.+. .+.
T Consensus 149 ~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~ 224 (359)
T d1w36d1 149 EINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 224 (359)
T ss_dssp SCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred cccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCc
Confidence 45789999986553 456788889999999998887777655322 33468889999654332 2222111 010
Q ss_pred CeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEE
Q 000139 600 FKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 679 (2062)
Q Consensus 600 lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLL 679 (2062)
.....+....... .....--.......+.. .......+++||||||-.+-- ......+..+....+++
T Consensus 225 ~~~~~~~~~~~~~--------t~~~ll~~~~~~~~~~~--~~~~~l~~d~lIIDEaSmv~~--~l~~~ll~~~~~~~~lI 292 (359)
T d1w36d1 225 TDEQKKRIPEDAS--------TLHRLLGAQPGSQRLRH--HAGNPLHLDVLVVDEASMIDL--PMMSRLIDALPDHARVI 292 (359)
T ss_dssp CSCCCCSCSCCCB--------TTTSCC-------------CTTSCCSCSEEEECSGGGCBH--HHHHHHHHTCCTTCEEE
T ss_pred hhhhhhhhhhhhh--------HHHHHHhhhhcchHHHH--hhhcccccceeeehhhhccCH--HHHHHHHHHhcCCCEEE
Confidence 0000000000000 00000000000011111 112335689999999999842 33456666777788999
Q ss_pred EeccCCC
Q 000139 680 LTGTPLQ 686 (2062)
Q Consensus 680 LTGTPLQ 686 (2062)
|.|=|-|
T Consensus 293 LvGD~~Q 299 (359)
T d1w36d1 293 FLGDRDQ 299 (359)
T ss_dssp EEECTTS
T ss_pred EECChhh
Confidence 9999877
No 62
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=92.24 E-value=0.071 Score=57.33 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhc
Q 000139 524 PLREYQHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEK 571 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~ 571 (2062)
.++|||.....-|...+..+. . -||.-..|.|||..+..++..+.+..
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~ 52 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccc
Confidence 467999999998888887654 3 47799999999999999998887654
No 63
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.57 E-value=0.14 Score=44.54 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCCChhhhHHHHHHHHhcCC---C-chhHHHHhhccccCccccccccCChhhHHHHHHHHH
Q 000139 1661 DVWLPQEDAILCAVVHEYGP---N-WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQ 1717 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~~g~---n-w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~~ 1717 (2062)
..||.+|+.+|...+..|.+ + |..|++.| | |++.+|..||+.|-+
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v----------g--kt~~ev~~~~k~l~e 50 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL----------G--RSVTDVTTKAKQLKD 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH----------T--SCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH----------C--CCHHHHHHHHHHHHH
Confidence 68999999999999999974 4 99999987 1 899999999998864
No 64
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=88.09 E-value=0.99 Score=48.81 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhcCC--c-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEE
Q 000139 529 QHIGLDWLVTMYEKRL--N-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTY 605 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~--g-GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y 605 (2062)
|...+.+|.....++. + -||.-+.|.|||..+.+++..+.+..+..+ .|..+..+... +..- ..+.++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~-----~~~~~~~~~~~-i~~~-~~~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-----TPCGVCDNCRE-IEQG-RFVDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCS-----SCCSCSHHHHH-HHHT-CCTTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCcccccc-----CccccchHHHH-HHcC-CCCeEEEe
Confidence 4566667766655433 3 578899999999999888777765443322 23333344332 2221 11233333
Q ss_pred eCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhh----hccCeeEEEEcCccccCChhhH--HHHHHHcccCceEEE
Q 000139 606 FGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVF----KRKKWKYLILDEAHLIKNWKSQ--RWQTLLNFNSKRRIL 679 (2062)
Q Consensus 606 ~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L----~r~~W~lVILDEAH~IKN~~Sk--~~qaL~~L~a~~RLL 679 (2062)
...... ..+.+..-...+ ...++.+|||||+|.+. ..++ +.+.+.......+++
T Consensus 90 ~~~~~~-------------------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~-~~~q~~Llk~lE~~~~~~~~i 149 (239)
T d1njfa_ 90 DAASRT-------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKFL 149 (239)
T ss_dssp ETTCSS-------------------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-HHHHHHHHHHHHSCCTTEEEE
T ss_pred cchhcC-------------------CHHHHHHHHHHHHhccccCCCEEEEEECcccCC-HHHHHHHHHHHhcCCCCeEEE
Confidence 221100 001111111111 12357899999999984 2222 334444445566777
Q ss_pred EeccCCCCChHHH
Q 000139 680 LTGTPLQNDLMEL 692 (2062)
Q Consensus 680 LTGTPLQNsL~EL 692 (2062)
|+.+-..+-+.-+
T Consensus 150 l~tn~~~~i~~~i 162 (239)
T d1njfa_ 150 LATTDPQKLPVTI 162 (239)
T ss_dssp EEESCGGGSCHHH
T ss_pred EEcCCccccChhH
Confidence 7766544433333
No 65
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=82.64 E-value=1.1 Score=52.77 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEE
Q 000139 528 YQHIGLDWLVTMYEKRL-NGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTY 605 (2062)
Q Consensus 528 YQ~~GL~WLv~l~~~~~-gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~y 605 (2062)
-|=.++.-|+.....+. ..+|.--+|.|||+.+.+++..+ .+|+|||||.. ...+|..+|..|+|...+..|
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 47777887777766654 35666679999999887777654 25999999985 567799999999998887766
Q ss_pred eC
Q 000139 606 FG 607 (2062)
Q Consensus 606 ~G 607 (2062)
..
T Consensus 89 ~~ 90 (413)
T d1t5la1 89 VS 90 (413)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 66
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=82.57 E-value=0.4 Score=41.30 Aligned_cols=42 Identities=14% Similarity=0.429 Sum_probs=36.3
Q ss_pred CCCChhhhHHHHHHHHhcCCCchhHHH-HhhccccCccccccccCChhhHHHHH
Q 000139 1661 DVWLPQEDAILCAVVHEYGPNWSLVSD-ILYGMTASGYYRGRYRHPVHCCERFR 1713 (2062)
Q Consensus 1661 ~~w~~~ed~~l~~~v~~~g~nw~l~~~-~~~~~~~~~~~~~~~r~~~~c~~r~~ 1713 (2062)
+.||++|-.+...-+-.||.||..|+- ++ -.|++.+|..-|=
T Consensus 2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v-----------~~Ks~~~~v~fYY 44 (57)
T d2crga1 2 EEWSASEACLFEEALEKYGKDFNDIRQDFL-----------PWKSLTSIIEYYY 44 (57)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTC-----------SSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcccHHHHHHHHc-----------CCCCHHHHHHHHH
Confidence 689999999999999999999999985 44 3599999998763
No 67
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=82.46 E-value=2.3 Score=47.08 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=77.7
Q ss_pred ccccCCcccccc--ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHH----HHHHHHHHcCCcEEEecCCCCHHHHHHHH
Q 000139 1052 QVYFPDRRLIQF--DCGKLQELAILLRKLKSDGHRALIFTQMTKMLD----ILEEFISLYGYTYMRLDGSTQPEERQTLM 1125 (2062)
Q Consensus 1052 ~~~fPd~rLiq~--dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLD----ILe~~L~~~Gi~y~RLDGsTs~eqRq~lm 1125 (2062)
.-..|..||++. .|||-.+....+......|.+|+|...-.-... .+..++...|+....+.|+++..+|..+.
T Consensus 100 ~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~ 179 (264)
T d1gm5a3 100 ISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIK 179 (264)
T ss_dssp HSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHH
T ss_pred hccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHH
Confidence 334566788875 489999999999888899999999988665443 44555555689999999999999999999
Q ss_pred HHHhcCCCceEEEEecccc-ccccCcccCCEEEEecC
Q 000139 1126 QRFNTNPKIFLFILSTRSG-GVGINLVGADTVIFYDS 1161 (2062)
Q Consensus 1126 erFN~D~~IfVfLLSTrAG-G~GLNLT~ADtVIfyD~ 1161 (2062)
...++ +.+.|+|. |++. -..+.+..-. +|++|-
T Consensus 180 ~~~~~-g~~~iiIG-Thsl~~~~~~f~~Lg-lviiDE 213 (264)
T d1gm5a3 180 SGLRN-GQIDVVIG-THALIQEDVHFKNLG-LVIIDE 213 (264)
T ss_dssp HHHHS-SCCCEEEE-CTTHHHHCCCCSCCC-EEEEES
T ss_pred HHHHC-CCCCEEEe-ehHHhcCCCCccccc-eeeecc
Confidence 99975 67777554 5554 3345333333 455553
No 68
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=81.50 E-value=0.24 Score=53.59 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=28.9
Q ss_pred cCeeEEEEcCccccCChhhHH-HHHHHcccCceEEEEeccCCCCChHHH
Q 000139 645 KKWKYLILDEAHLIKNWKSQR-WQTLLNFNSKRRILLTGTPLQNDLMEL 692 (2062)
Q Consensus 645 ~~W~lVILDEAH~IKN~~Sk~-~qaL~~L~a~~RLLLTGTPLQNsL~EL 692 (2062)
..+.++||||+|.+.+..... .+.+.......++++|.+-+.+-+.-|
T Consensus 130 ~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l 178 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 178 (252)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHH
T ss_pred CCceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhh
Confidence 357899999999995543322 233333355567788877665444333
No 69
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=80.55 E-value=4.2 Score=42.76 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 000139 529 QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPT 583 (2062)
Q Consensus 529 Q~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPt 583 (2062)
|+.-+.-++..- .+..-|+..+.|.|||-.++.+...+........-+++|.|.
T Consensus 2 ~~~~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence 455555444421 244568999999999999998887654332222235666664
No 70
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=77.00 E-value=1.2 Score=48.89 Aligned_cols=57 Identities=21% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVM 586 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL 586 (2062)
+|.|-|..+|+|. ....++---.|.|||.+.+..++++....+ ....+||++++...
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a 58 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 58 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHH
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHH
Confidence 4789999999752 334566677999999998888888766543 33579999998654
No 71
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.51 E-value=1 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+.||.-..|.|||..+-.++..+.+
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l~~ 62 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHELLG 62 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCchhhHHHHHHHHhc
Confidence 5789999999999988887777654
No 72
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=75.09 E-value=2.6 Score=49.41 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEE
Q 000139 527 EYQHIGLDWLVTMYEKRLN-GILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILT 604 (2062)
Q Consensus 527 pYQ~~GL~WLv~l~~~~~g-GILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~ 604 (2062)
.-|-.++.-|+.....+.+ ..|.--.|.|||+.+.+++..+. +|+|||||.. ...+|..+|..|++.-.+..
T Consensus 11 ~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~------rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 11 GDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALG------RPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHT------CCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHhC------CCEEEEeCCHHHHHHHHHHHHHhcCccceee
Confidence 4566777777777776655 45666799999988877765442 4999999995 56779999999998877766
Q ss_pred EeC
Q 000139 605 YFG 607 (2062)
Q Consensus 605 y~G 607 (2062)
|..
T Consensus 85 fp~ 87 (408)
T d1c4oa1 85 FIS 87 (408)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 73
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=71.89 E-value=10 Score=40.91 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=78.1
Q ss_pred ccccCCcccccc--ccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHH----HcCCcEEEecCCCCHHHHHHHH
Q 000139 1052 QVYFPDRRLIQF--DCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFIS----LYGYTYMRLDGSTQPEERQTLM 1125 (2062)
Q Consensus 1052 ~~~fPd~rLiq~--dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~----~~Gi~y~RLDGsTs~eqRq~lm 1125 (2062)
.-..|..+|++. .|||-.+....+......|.+|+|...-.-...-+...+. ..|+.+..++|.++..+|..+.
T Consensus 72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 151 (233)
T d2eyqa3 72 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 151 (233)
T ss_dssp HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHH
T ss_pred hccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHH
Confidence 344566778765 4899999999999999999999999988766555544443 4678999999999999999999
Q ss_pred HHHhcCCCceEEEEecccccc-ccCcccCCEEEEecC
Q 000139 1126 QRFNTNPKIFLFILSTRSGGV-GINLVGADTVIFYDS 1161 (2062)
Q Consensus 1126 erFN~D~~IfVfLLSTrAGG~-GLNLT~ADtVIfyD~ 1161 (2062)
..+.. +.+.| |+-|++.-. .+.+..-- +|++|-
T Consensus 152 ~~~~~-g~~~i-viGths~l~~~~~f~~Lg-LiIiDE 185 (233)
T d2eyqa3 152 AEVAE-GKIDI-LIGTHKLLQSDVKFKDLG-LLIVDE 185 (233)
T ss_dssp HHHHT-TCCSE-EEECTHHHHSCCCCSSEE-EEEEES
T ss_pred HHHhC-CCCCE-EEeehhhhccCCcccccc-ceeeec
Confidence 99986 56666 456666532 34332222 455664
No 74
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.38 E-value=4.8 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
+.||.-..|+|||..+-+++..+.
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHhh
Confidence 578999999999988877776653
No 75
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=65.17 E-value=4.4 Score=42.73 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
.+-||.-..|+|||..+-+++..+.+
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence 35689999999999988887776654
No 76
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=64.82 E-value=11 Score=41.55 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=25.8
Q ss_pred HHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 533 LDWLVTMYE--KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 533 L~WLv~l~~--~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
++.|+.... ...|.||.-+.|.|||..+-++...+..
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence 455554443 3457899999999999887776655543
No 77
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=64.77 E-value=3.6 Score=44.80 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=26.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~Q 588 (2062)
.|.+|.-..|.|||..+=++...+ + -|++.|-+..++..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~----~--~~~~~i~~~~l~~~ 81 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA----R--VPFITASGSDFVEM 81 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT----T--CCEEEEEHHHHHHS
T ss_pred ceEEEecCCCCChhHHHHHHHHHc----C--CCEEEEEhHHhhhc
Confidence 356789999999998876665432 2 36666666555543
No 78
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=62.11 E-value=4.5 Score=44.63 Aligned_cols=59 Identities=20% Similarity=0.044 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcC-CCCcEEEEecCCcHHH
Q 000139 524 PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKG-IWGPHLIVVPTSVMLN 588 (2062)
Q Consensus 524 ~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g-~~Gp~LIVvPtSLL~Q 588 (2062)
.|-+-|+.+|++. ....++.--.|.|||.+.+.-++++....+ ....+||++++....+
T Consensus 11 ~L~~eQ~~~v~~~------~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~ 70 (318)
T d1pjra1 11 HLNKEQQEAVRTT------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70 (318)
T ss_dssp TSCHHHHHHHHCC------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH
T ss_pred hCCHHHHHHHhCC------CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHH
Confidence 4889999999741 334566677999999999988888776443 2346899999864433
No 79
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.31 E-value=3.6 Score=43.34 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
+-||.-..|+|||..+-+++..+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHHcC
Confidence 4689999999999998888876644
No 80
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=59.20 E-value=14 Score=39.12 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=69.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+|.-.+|.|||-++.=+.+ .....+ .+++||+--.--.-=...++.|+--+.+-++........
T Consensus 13 ~lvGptGvGKTTTiAKLA~-~~~~~g--~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~------------- 76 (211)
T d2qy9a2 13 LMVGVNGVGKTTTIGKLAR-QFEQQG--KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS------------- 76 (211)
T ss_dssp EEECCTTSCHHHHHHHHHH-HHHTTT--CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCH-------------
T ss_pred EEECCCCCCHHHHHHHHHH-HHHHCC--CcEEEEecccccccchhhhhhhhhhcCCcccccccCCCH-------------
Confidence 4688999999976655544 433333 355666544333333455555543233322222111100
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhH------HHHHHHcc----cCceEEEEeccCCCCChHHHHHHH
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQ------RWQTLLNF----NSKRRILLTGTPLQNDLMELWSLM 696 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk------~~qaL~~L----~a~~RLLLTGTPLQNsL~ELwSLL 696 (2062)
...+.......+...+++|++|=|=+.-+.... ..+.+..+ .....|.|++|-=++.+.+.....
T Consensus 77 -----~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~ 151 (211)
T d2qy9a2 77 -----ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 151 (211)
T ss_dssp -----HHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhh
Confidence 011112222233456799999988765443211 11122211 235668888887777777777766
Q ss_pred HHhCCC
Q 000139 697 HFLMPH 702 (2062)
Q Consensus 697 ~FL~P~ 702 (2062)
..+.++
T Consensus 152 ~~~~~~ 157 (211)
T d2qy9a2 152 EAVGLT 157 (211)
T ss_dssp HHSCCC
T ss_pred hccCCc
Confidence 666544
No 81
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=57.39 E-value=2.8 Score=45.40 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcC-------CCCcEEEEecCCcHHHHHHHHHHHC
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKG-------IWGPHLIVVPTSVMLNWETEFLKWC 597 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g-------~~Gp~LIVvPtSLL~QW~~Efkkw~ 597 (2062)
+.-++|+-..|.|||..++.++++++.... ..+++|++.--....++...+..+.
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG 90 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHHh
Confidence 455789999999999999988877654221 2247888876666666666666654
No 82
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=56.90 E-value=10 Score=39.81 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=40.8
Q ss_pred HHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 533 LDWLVT-MYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 533 L~WLv~-l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
|+-++. .+..+.-.+|+-+.|.|||..++.+++.... ..++++.++-..-...+.+.+..+
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~---~~~~~~~is~e~~~~~~~~~~~~~ 76 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKERAILFAYEESRAQLLRNAYSW 76 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESSSCHHHHHHHHHTT
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH---hccccceeeccCCHHHHHHHHHHc
Confidence 444443 1223444588999999999999998888653 234678887666666666666554
No 83
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.77 E-value=4 Score=44.55 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNW 589 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW 589 (2062)
..|.+|.-..|.|||..+=++...+ +.+++.|.+..+...|
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~------~~~~~~i~~~~l~~~~ 78 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKL 78 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT------TCEEEEECHHHHTTSC
T ss_pred CceeEEecCCCCCchHHHHHHHHHh------CCeEEEEEchhhcccc
Confidence 3456788899999998654443332 2366666665555444
No 84
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=55.51 E-value=5.3 Score=39.26 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhCCCeEEEEeCch-------------HHHHHHHHHHHHcCCcEEEe
Q 000139 1070 ELAILLRKLKSDGHRALIFTQMT-------------KMLDILEEFISLYGYTYMRL 1112 (2062)
Q Consensus 1070 ~L~~LLrkLks~GhKVLIFSQ~t-------------~mLDILe~~L~~~Gi~y~RL 1112 (2062)
-....|..|+..||+++|||-.. ...++....|+.+|+.|-.|
T Consensus 28 ~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Yd~L 83 (124)
T d1xpja_ 28 DVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEI 83 (124)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 35688999999999999999873 35678999999999988665
No 85
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.48 E-value=6.3 Score=41.83 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=26.0
Q ss_pred ccCeeEEEEcCccccCChhhHHHHHHHcc--cCc-eEEEEeccCCCCC
Q 000139 644 RKKWKYLILDEAHLIKNWKSQRWQTLLNF--NSK-RRILLTGTPLQND 688 (2062)
Q Consensus 644 r~~W~lVILDEAH~IKN~~Sk~~qaL~~L--~a~-~RLLLTGTPLQNs 688 (2062)
...+.++++||++.+-.........+..+ ... ..++++.|+....
T Consensus 121 ~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~~ 168 (253)
T d1sxja2 121 NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPK 168 (253)
T ss_dssp STTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSST
T ss_pred cccceEEEeeeccccccchhhhhHHHhhhhcccccccccccccccccc
Confidence 34678999999999866554444444443 233 3444444444333
No 86
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=55.04 E-value=15 Score=38.92 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+|.-.+|.||| +++|=|++....++. ++.+|+=-.--.-=...++.|+--+.+.+|..........
T Consensus 15 ~lvGptGvGKT-TTiAKLAa~~~~~~~--kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~----------- 80 (213)
T d1vmaa2 15 MVVGVNGTGKT-TSCGKLAKMFVDEGK--SVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAA----------- 80 (213)
T ss_dssp EEECCTTSSHH-HHHHHHHHHHHHTTC--CEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHH-----------
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCC--ceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHH-----------
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc-----------cCceEEEEeccCCCCChHHHHHH
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF-----------NSKRRILLTGTPLQNDLMELWSL 695 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L-----------~a~~RLLLTGTPLQNsL~ELwSL 695 (2062)
.+...........+++|+||=|=+..+ +......+..+ .....|.|.+|-=++.+.+....
T Consensus 81 -------~~~~~~~~~~~~~~d~ilIDTaGr~~~-d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~ 152 (213)
T d1vmaa2 81 -------VAFDAVAHALARNKDVVIIDTAGRLHT-KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF 152 (213)
T ss_dssp -------HHHHHHHHHHHTTCSEEEEEECCCCSC-HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCEEEEeccccccc-hHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhh
Q ss_pred HHHhCCC
Q 000139 696 MHFLMPH 702 (2062)
Q Consensus 696 L~FL~P~ 702 (2062)
...+.+.
T Consensus 153 ~~~~~~~ 159 (213)
T d1vmaa2 153 KEAVNVT 159 (213)
T ss_dssp HHHSCCC
T ss_pred ccccCCc
No 87
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=54.90 E-value=17 Score=38.01 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...|.||.-+.|.|||-.+=.+...+..
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~ 69 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence 4557899999999999877666655543
No 88
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=52.30 E-value=36 Score=35.51 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHH
Q 000139 546 GILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 546 GILADEMGLGKTIQaIALLa~L~~ 569 (2062)
-+|.-..|.|||.-+-|+...+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~ 62 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK 62 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 578999999999988777666543
No 89
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.87 E-value=8.8 Score=32.95 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCCChhhhHHHHHHHHhcCC-------C--chhHHHHhhccccCccccccccCChhhHHHHHHHH
Q 000139 1660 PDVWLPQEDAILCAVVHEYGP-------N--WSLVSDILYGMTASGYYRGRYRHPVHCCERFRELI 1716 (2062)
Q Consensus 1660 ~~~w~~~ed~~l~~~v~~~g~-------n--w~l~~~~~~~~~~~~~~~~~~r~~~~c~~r~~~~~ 1716 (2062)
..++|.+||++|+.+|.+|++ | |.-..+.- =.-|+..+=|.||...+
T Consensus 2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~----------~~~HtwQSwrdRY~K~L 57 (59)
T d1fexa_ 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS----------LTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC----------SSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhc----------CCCCCHHHHHHHHHHHh
Confidence 368999999999999999853 3 76665411 12477888999997543
No 90
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=51.53 E-value=22 Score=37.17 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=29.2
Q ss_pred cHHHHHHHH-HHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHH
Q 000139 526 REYQHIGLD-WLVTMYEK----RLNGILADEMGLGKTIMTIAMLAHLA 568 (2062)
Q Consensus 526 RpYQ~~GL~-WLv~l~~~----~~gGILADEMGLGKTIQaIALLa~L~ 568 (2062)
|+.|+.-+. ||.....+ ..+.+|.-.+|.|||..+=+++..+.
T Consensus 21 Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence 788887765 44333222 24568899999999988766666553
No 91
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=50.22 E-value=6.7 Score=42.83 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHH
Q 000139 543 RLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVML 587 (2062)
Q Consensus 543 ~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~ 587 (2062)
..|.+|.-..|.|||..+=++...+ + -|++.|-+..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~----~--~~~~~i~~~~l~~ 83 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA----K--VPFFTISGSDFVE 83 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH----T--CCEEEECSCSSTT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc----C--CCEEEEEhHHhhh
Confidence 3456789999999998876665443 1 2666666666654
No 92
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=50.00 E-value=28 Score=36.61 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCC
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLK 621 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k 621 (2062)
++.-.+|+-.+|.||| ++++=|++.....|. ++.+|+--.--.-=...++.|+--+.+-+|..........
T Consensus 5 ~~~vi~lvGptGvGKT-TTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~------ 75 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKT-TTIAKLGRYYQNLGK--KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAA------ 75 (207)
T ss_dssp SSSEEEEECSTTSSHH-HHHHHHHHHHHTTTC--CEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHH------
T ss_pred CCEEEEEECCCCCCHH-HHHHHHHHHHHHCCC--cEEEEEeccccccchhhHhhcccccCceEEeccCCccHHH------
Q ss_pred CCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHc----------ccCceEEEEeccCCCCChHH
Q 000139 622 PNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLN----------FNSKRRILLTGTPLQNDLME 691 (2062)
Q Consensus 622 ~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~----------L~a~~RLLLTGTPLQNsL~E 691 (2062)
.+............++|++|=|=+..+.....-..-.- ......|.|++|-=++.+.+
T Consensus 76 ------------~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~ 143 (207)
T d1okkd2 76 ------------LAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ 143 (207)
T ss_dssp ------------HHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH
T ss_pred ------------HHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH
Q ss_pred HHHHHHHhCCC
Q 000139 692 LWSLMHFLMPH 702 (2062)
Q Consensus 692 LwSLL~FL~P~ 702 (2062)
.+.....+.++
T Consensus 144 ~~~~~~~~~~~ 154 (207)
T d1okkd2 144 AKKFHEAVGLT 154 (207)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHhhhccCCc
No 93
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=48.31 E-value=44 Score=32.94 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=25.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
++.-.|..|||..-|..+..+.. .| .++||+-|..=
T Consensus 11 lI~GpMfSGKTteLi~~~~~~~~-~g--~~vl~i~~~~D 46 (141)
T d1xx6a1 11 VIVGPMYSGKSEELIRRIRRAKI-AK--QKIQVFKPEID 46 (141)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEEC--
T ss_pred EEEeccccHHHHHHHHHHHHhhh-cC--CcEEEEEeccc
Confidence 56788999999888777655433 22 37888888753
No 94
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=44.25 E-value=35 Score=35.77 Aligned_cols=135 Identities=14% Similarity=-0.014 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+|.-..|.||| ++++=|++....++. ++++|+--.--..=...++.|+.-+.+-++.........
T Consensus 14 ~lvGp~GvGKT-TTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~------------ 78 (207)
T d1ls1a2 14 FLVGLQGSGKT-TTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE------------ 78 (207)
T ss_dssp EEECCTTTTHH-HHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH------------
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhcCCccccccccchhh------------
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcc----cCceEEEEeccCCCCChHHHHHHHHHhCCC
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTPLQNDLMELWSLMHFLMPH 702 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L----~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~ 702 (2062)
.....-.........++|++|=|=+..+..........-. .....+.+.+|--++.+...+.....+.++
T Consensus 79 ------~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~ 152 (207)
T d1ls1a2 79 ------SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT 152 (207)
T ss_dssp ------HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCC
T ss_pred ------HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCC
No 95
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.66 E-value=20 Score=35.02 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=25.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
++.-.|..|||-.-|..+..... ....++++-|..-
T Consensus 6 li~GpMfsGKTt~Li~~~~~~~~---~g~~v~~ikp~~D 41 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 41 (133)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred EEEecccCHHHHHHHHHHHHHHH---cCCcEEEEecccc
Confidence 56778999999877766554432 2346888888754
No 96
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=41.57 E-value=15 Score=39.57 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHHHHHHHHHH
Q 000139 545 NGILADEMGLGKTIMTIAMLA 565 (2062)
Q Consensus 545 gGILADEMGLGKTIQaIALLa 565 (2062)
+.+|.-..|.|||..+-++..
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 467899999999988766543
No 97
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=38.53 E-value=41 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLAC 569 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~ 569 (2062)
...|.||.-+.|.|||..+=.|...+..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~~i~~ 69 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 69 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHHHHHh
Confidence 4556788889999999877666554433
No 98
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=37.89 E-value=42 Score=35.29 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCCCCeEEEEeCChhhHHhhhhccCCCCCce
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFH 626 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P~lkVl~y~Gs~kerk~~r~gw~k~~~fd 626 (2062)
+|.-.+|.||| +++|=|++.....|. ++.||+=-.--..=...++.|+--+.+-++.......-..
T Consensus 16 ~lvGptGvGKT-TTiAKLA~~~~~~g~--kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~----------- 81 (211)
T d1j8yf2 16 MLVGVQGTGKA-TTAGKLAYFYKKKGF--KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVG----------- 81 (211)
T ss_dssp EEECSCCC-----HHHHHHHHHHHTTC--CEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHH-----------
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCC--ceEEEEeeccccchhHHHHHhccccCcceeecccchhhhH-----------
Q ss_pred EEEEehhhhhhchhhhhccCeeEEEEcCcccc-CChhhHHHHHHHcc-----cCceEEEEeccCCCCChHHHHHHHHHhC
Q 000139 627 VCITTYRLIIQDSKVFKRKKWKYLILDEAHLI-KNWKSQRWQTLLNF-----NSKRRILLTGTPLQNDLMELWSLMHFLM 700 (2062)
Q Consensus 627 VVITSYe~l~~d~~~L~r~~W~lVILDEAH~I-KN~~Sk~~qaL~~L-----~a~~RLLLTGTPLQNsL~ELwSLL~FL~ 700 (2062)
.+.+....+.....++|+||=+=+- .+........+..+ .....+.|++|--++.+.......+++.
T Consensus 82 -------~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~ 154 (211)
T d1j8yf2 82 -------IAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASK 154 (211)
T ss_dssp -------HHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCT
T ss_pred -------HHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccC
Q ss_pred CC
Q 000139 701 PH 702 (2062)
Q Consensus 701 P~ 702 (2062)
++
T Consensus 155 ~~ 156 (211)
T d1j8yf2 155 IG 156 (211)
T ss_dssp TE
T ss_pred cc
No 99
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=35.42 E-value=51 Score=32.26 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=24.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSV 585 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSL 585 (2062)
++.-.|..|||-.-|-.+..+.. . ..+++++-|..-
T Consensus 6 ~i~GpMfsGKTteLi~~~~~~~~-~--~~kv~~ikp~~D 41 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHRLEY-A--DVKYLVFKPKID 41 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH-T--TCCEEEEEECCC
T ss_pred EEEccccCHHHHHHHHHHHHHHH-C--CCcEEEEEEccc
Confidence 45678999999887776654432 2 247888888754
No 100
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=34.66 E-value=21 Score=42.50 Aligned_cols=56 Identities=21% Similarity=0.092 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCC-CCcEEEEecCC
Q 000139 523 FPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGI-WGPHLIVVPTS 584 (2062)
Q Consensus 523 ~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~-~Gp~LIVvPtS 584 (2062)
..|.+=|..+|. .. ..+.++---.|.|||.+.+.-++++....+. ...+|||+.+.
T Consensus 10 ~~L~~eQ~~~v~-----~~-~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~ 66 (623)
T g1qhh.1 10 AHLNKEQQEAVR-----TT-EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66 (623)
T ss_dssp TTSCHHHHHHHH-----CC-SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred HhcCHHHHHHHc-----CC-CCCEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccH
Confidence 468899988884 12 2344555669999999999999988765442 34688888763
No 101
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=34.27 E-value=93 Score=32.64 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCC-cHHHHHHHHHHHCCCCeEEEEeCChhhHHh--hhhccCCCCCceEEEEehhhhhhchhhhhccCee
Q 000139 572 GIWGPHLIVVPTS-VMLNWETEFLKWCPAFKILTYFGSAKERKF--KRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWK 648 (2062)
Q Consensus 572 g~~Gp~LIVvPtS-LL~QW~~Efkkw~P~lkVl~y~Gs~kerk~--~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~ 648 (2062)
...|-+.||||.. -+.+....+++.+|.+++.+.||....... .-.. +..+.++|+|+|-=+= .. +.-.+-.
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~-F~~g~~~ILv~TtvIE-vG---iDvpnA~ 103 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND-FHHQRFNVLVCTTIIE-TG---IDIPTAN 103 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHH-HHTTSCCEEEESSTTG-GG---SCCTTEE
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHH-HHcCCcceEEEehhhh-hc---cCCCCCc
Confidence 3456799999974 688899999999999999999997654321 1122 2346788988875221 11 1223457
Q ss_pred EEEEcCccccCChhhHHHHHHHcc----cCceEEEEeccC
Q 000139 649 YLILDEAHLIKNWKSQRWQTLLNF----NSKRRILLTGTP 684 (2062)
Q Consensus 649 lVILDEAH~IKN~~Sk~~qaL~~L----~a~~RLLLTGTP 684 (2062)
.||+..|+++. =+++++.--+. ...+.+|+|..+
T Consensus 104 ~iiI~~a~rfG--LaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 104 TIIIERADHFG--LAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp EEEETTTTSSC--HHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEEecchhcc--ccccccccceeeecCccceEEEEecCC
Confidence 89999999885 35555544333 334678887544
No 102
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=31.76 E-value=16 Score=35.36 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=34.5
Q ss_pred HHHHHHHhhhCCCeEEEEeCchH-HHHHHHHHHHHcCCcEEEec
Q 000139 1071 LAILLRKLKSDGHRALIFTQMTK-MLDILEEFISLYGYTYMRLD 1113 (2062)
Q Consensus 1071 L~~LLrkLks~GhKVLIFSQ~t~-mLDILe~~L~~~Gi~y~RLD 1113 (2062)
....|+.|+..||+++|||-... ....-..+|+.+|+.|-.+.
T Consensus 26 ~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~yd~i~ 69 (122)
T d2obba1 26 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAAN 69 (122)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEES
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCceehh
Confidence 46778888999999999998764 34566788999999986663
No 103
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.58 E-value=37 Score=31.98 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCCeEEEEeCc------hHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccc
Q 000139 1081 DGHRALIFTQM------TKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1081 ~GhKVLIFSQ~------t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG 1145 (2062)
..++|+||+-. -.+-.....+|+.+|+.|..++=....+-|+.+.+.-+...-..|||=....||
T Consensus 13 ~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG 83 (109)
T d1wika_ 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGG 83 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEEC
T ss_pred hcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcC
Confidence 36899999642 223455667789999999999887777766666654444444556654444443
No 104
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=29.21 E-value=92 Score=30.53 Aligned_cols=80 Identities=13% Similarity=-0.035 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHH----cCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEec
Q 000139 1066 GKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISL----YGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILST 1141 (2062)
Q Consensus 1066 GKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~----~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLST 1141 (2062)
.-...+.+|+.+....|+||+|++.-...++.|-++|=. .-+++.+.++... ....|+ +++
T Consensus 20 ~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~~~--------------~~~PI~-l~~ 84 (147)
T d1em8a_ 20 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR--------------GGAPVE-IAW 84 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSST--------------TCCSEE-EEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhCCCCcccccccccCCCcc--------------CCCCEE-ecC
Confidence 345678899999999999999999999999999999932 2455666544432 223344 333
Q ss_pred cccccccCcccCCEEEEecCCC
Q 000139 1142 RSGGVGINLVGADTVIFYDSDW 1163 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD~dW 1163 (2062)
.. .-+...++.+|.+++.+
T Consensus 85 ~~---~~~~~~~dvlinl~~~~ 103 (147)
T d1em8a_ 85 PQ---KRSSSRRDILISLRTSF 103 (147)
T ss_dssp TT---SCCCSCCSEEEECCSSC
T ss_pred CC---CCCCccceEEEECCCCC
Confidence 21 12234577788887654
No 105
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=28.72 E-value=35 Score=36.28 Aligned_cols=58 Identities=7% Similarity=-0.020 Sum_probs=38.0
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHH
Q 000139 533 LDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETE 592 (2062)
Q Consensus 533 L~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~E 592 (2062)
|+-+..-+..+.-.+|+-..|.|||..++.++.+++...| .+++++..---..+...-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g--~~v~~~s~E~~~~~~~~r 82 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEESVEETAED 82 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSSCHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcc--cceeEeeeccchhhHHhH
Confidence 3433333344555689999999999888887776654333 388998876555554433
No 106
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=27.58 E-value=39 Score=32.11 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=53.4
Q ss_pred hhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEE
Q 000139 1078 LKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVI 1157 (2062)
Q Consensus 1078 Lks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVI 1157 (2062)
+...+.||||.+......+.|...|..+|+.+..+++-.. |. ++.+.+++ .....|.-+.....+|
T Consensus 30 i~~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~~----------~~-~~~~~i~~---~~l~~GF~~~~~~l~v 95 (117)
T d2eyqa2 30 LETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE----------AS-DRGRYLMI---GAAEHGFVDTVRNLAL 95 (117)
T ss_dssp HTTCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGGG----------CC-TTCCEEEE---CCCCSCEEETTTTEEE
T ss_pred HHhCCCeEEEEECCccHHHHHHHHHHHcCCCceEecChhh----------hc-CceEEEEE---ecCccccccCCCCEEE
Confidence 3445779999999999999999999999999877765331 22 34554433 4567889999999999
Q ss_pred EecCC
Q 000139 1158 FYDSD 1162 (2062)
Q Consensus 1158 fyD~d 1162 (2062)
+-+.+
T Consensus 96 ItE~d 100 (117)
T d2eyqa2 96 ICESD 100 (117)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 87653
No 107
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=26.83 E-value=27 Score=35.33 Aligned_cols=52 Identities=13% Similarity=0.306 Sum_probs=35.0
Q ss_pred hhhhccCeeEEEEcCccccCCh----hhHHHHHHHcccCceEEEEeccCCCCChHH
Q 000139 640 KVFKRKKWKYLILDEAHLIKNW----KSQRWQTLLNFNSKRRILLTGTPLQNDLME 691 (2062)
Q Consensus 640 ~~L~r~~W~lVILDEAH~IKN~----~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~E 691 (2062)
..+....|++|||||.-..-+. .......+..-....-+.|||-=....|.|
T Consensus 88 ~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e 143 (157)
T d1g5ta_ 88 RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 143 (157)
T ss_dssp HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 3456678999999998765442 345555565556667899999855544444
No 108
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=26.41 E-value=55 Score=36.44 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEe-cCCcHHHHHHHHHHHCCCCeEEEEeCChh
Q 000139 532 GLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVV-PTSVMLNWETEFLKWCPAFKILTYFGSAK 610 (2062)
Q Consensus 532 GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVv-PtSLL~QW~~Efkkw~P~lkVl~y~Gs~k 610 (2062)
.+.+|......+.|.+++-.+|.|||-..-+++.++ +....+++|- |.-+... +...+..+.+.
T Consensus 155 ~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i----~~~~rivtiEd~~El~l~---------~~~~~~~~~~~-- 219 (323)
T d1g6oa_ 155 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFK---------HHKNYTQLFFG-- 219 (323)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGS----CTTCCEEEEESSCCCCCS---------SCSSEEEEECB--
T ss_pred HHHHHHHHHHhCCCEEEEeeccccchHHHHHHhhhc----ccccceeeccchhhhhcc---------cccccceeccc--
Confidence 344555556678889999999999997655544332 2233444332 2211100 01112211111
Q ss_pred hHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEEEEeccCCCCChH
Q 000139 611 ERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 690 (2062)
Q Consensus 611 erk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RLLLTGTPLQNsL~ 690 (2062)
.. .|+..+ .....+.+.++||+.|.- . ...+.++..+.+.+.-.| +|-..|+..
T Consensus 220 ------------~~-----~~~~~l---l~~~lR~~pd~iivgEiR---~--~ea~~~l~a~~tGh~g~~-tT~Ha~s~~ 273 (323)
T d1g6oa_ 220 ------------GN-----ITSADC---LKSCLRMRPDRIILGELR---S--SEAYDFYNVLCSGHKGTL-TTLHAGSSE 273 (323)
T ss_dssp ------------TT-----BCHHHH---HHHHTTSCCSEEEESCCC---S--THHHHHHHHHHTTCSCEE-EEECCSSHH
T ss_pred ------------cc-----hhHHHH---HHHHhccCCCcccCCccC---c--hhHHHHHHHHHhcCCcEE-EEECCCCHH
Confidence 00 122222 233456789999999983 3 234556666666655333 356667777
Q ss_pred HHHHH
Q 000139 691 ELWSL 695 (2062)
Q Consensus 691 ELwSL 695 (2062)
+...-
T Consensus 274 ~a~~R 278 (323)
T d1g6oa_ 274 EAFIR 278 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 109
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.96 E-value=11 Score=41.00 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 000139 544 LNGILADEMGLGKTIMTIAMLAHL 567 (2062)
Q Consensus 544 ~gGILADEMGLGKTIQaIALLa~L 567 (2062)
.|.+|.-..|.|||..+-++...+
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 355678899999998887765544
No 110
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.16 E-value=1.6e+02 Score=30.29 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcCCCceEEEEecccc-ccccCcccCCEEEEecCCCC------
Q 000139 1092 TKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSG-GVGINLVGADTVIFYDSDWN------ 1164 (2062)
Q Consensus 1092 t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D~~IfVfLLSTrAG-G~GLNLT~ADtVIfyD~dWN------ 1164 (2062)
..++.-|...+..+||..+.++.....+.....++.|... ++.-+|+..... -.-+......-+|+++.++.
T Consensus 18 ~~~~~~i~~~~~~~Gy~~~~~~s~~d~~~~~~~i~~l~~~-~vdgiIi~~~~~~~~~~~~~~~~p~v~i~~~~~~~~~v~ 96 (255)
T d1byka_ 18 NLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRR-NIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVC 96 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTT-TCCEEEEECCTTCCTTTSGGGSSSEEEESSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhc-cccceeeccccchHHHHHHHcCCCEEEeccCCCCCCEEE
Confidence 3566677777777777777777777766666667777642 233333332111 11111111222444554432
Q ss_pred ---hhhHHHHHHhhhccCCcC
Q 000139 1165 ---PAMDQQAQDRCHRIGQTR 1182 (2062)
Q Consensus 1165 ---Pa~d~QA~gRahRIGQTR 1182 (2062)
-..-.++..+....|-+|
T Consensus 97 ~D~~~~g~~~~~~L~~~g~~~ 117 (255)
T d1byka_ 97 YDDEGAIKILMQRLYDQGHRN 117 (255)
T ss_dssp ECHHHHHHHHHHHHHHTTCCC
T ss_pred eCcHHHHHHHHHHHHHhcccc
Confidence 234456777777777655
No 111
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=24.71 E-value=42 Score=34.02 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWET 591 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~ 591 (2062)
.+.-.+|+-+.|.|||..++.++.......+ .+++++..-........
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~--~~~~~~s~e~~~~~~~~ 72 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIK 72 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCcccccccCCHHHHHH
Confidence 3445688999999999999888776554433 26777776544444333
No 112
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=22.84 E-value=34 Score=34.58 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=22.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000139 547 ILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV 580 (2062)
Q Consensus 547 ILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIV 580 (2062)
|-+-.+|.|||..++.|...+.. .|. ++++|
T Consensus 6 i~gt~~GVGKTtvs~~La~aLa~-~G~--rVl~i 36 (224)
T d1byia_ 6 VTGTDTEVGKTVASCALLQAAKA-AGY--RTAGY 36 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH-TTC--CEEEE
T ss_pred EEECCCCccHHHHHHHHHHHHHH-CCC--eEEEE
Confidence 33445799999999998888876 343 56666
No 113
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=22.55 E-value=19 Score=39.96 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHH
Q 000139 542 KRLNGILADEMGLGKTIMTIAMLAH 566 (2062)
Q Consensus 542 ~~~gGILADEMGLGKTIQaIALLa~ 566 (2062)
...|.+|.-.+|.|||..|=++...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 4567788999999999998776554
Done!