Query 000140
Match_columns 2060
No_of_seqs 351 out of 628
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 5.7E-26 2E-30 213.3 4.9 72 114-185 3-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 5E-25 1.7E-29 209.8 6.0 73 113-185 6-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 8.6E-10 2.9E-14 107.8 6.0 82 869-954 13-97 (100)
4 2doa_A RNA polymerase II elong 98.8 2.2E-09 7.4E-14 105.9 5.5 82 869-954 12-96 (104)
5 2ct0_A Non-SMC element 1 homol 88.0 0.079 2.7E-06 50.1 -0.6 38 1430-1487 33-70 (74)
6 2kiz_A E3 ubiquitin-protein li 82.6 0.59 2E-05 42.9 2.5 37 1427-1485 31-67 (69)
7 1v87_A Deltex protein 2; ring- 81.3 0.34 1.2E-05 49.2 0.4 38 1428-1482 58-95 (114)
8 1bby_A RAP30; average structur 81.1 0.35 1.2E-05 44.8 0.4 32 898-930 35-66 (69)
9 2ecm_A Ring finger and CHY zin 80.1 0.41 1.4E-05 41.7 0.5 18 1428-1445 24-41 (55)
10 2xeu_A Ring finger protein 4; 78.8 0.45 1.5E-05 42.7 0.3 18 1428-1445 25-42 (64)
11 2ct2_A Tripartite motif protei 78.7 0.61 2.1E-05 44.8 1.2 32 1428-1478 34-65 (88)
12 2ea6_A Ring finger protein 4; 77.5 0.69 2.4E-05 42.1 1.2 19 1427-1445 36-54 (69)
13 3ng2_A RNF4, snurf, ring finge 77.5 0.72 2.5E-05 42.4 1.3 18 1428-1445 32-49 (71)
14 2ecv_A Tripartite motif-contai 76.6 0.83 2.9E-05 43.3 1.5 37 1428-1480 34-70 (85)
15 1x4j_A Ring finger protein 38; 76.0 0.41 1.4E-05 44.8 -0.8 18 1428-1445 41-58 (75)
16 1chc_A Equine herpes virus-1 r 75.7 0.93 3.2E-05 41.3 1.5 38 1427-1486 20-57 (68)
17 2ep4_A Ring finger protein 24; 75.1 1.1 3.9E-05 41.5 1.9 18 1428-1445 33-50 (74)
18 2ysl_A Tripartite motif-contai 73.6 0.76 2.6E-05 42.5 0.3 32 1428-1478 35-66 (73)
19 1iym_A EL5; ring-H2 finger, ub 72.8 0.62 2.1E-05 40.6 -0.5 17 1428-1444 24-40 (55)
20 1g25_A CDK-activating kinase a 72.8 1.4 4.6E-05 40.0 1.8 18 1428-1445 23-40 (65)
21 2ecw_A Tripartite motif-contai 72.6 1.1 3.7E-05 42.5 1.2 35 1428-1478 34-68 (85)
22 2ecy_A TNF receptor-associated 71.0 1.3 4.5E-05 40.2 1.3 18 1428-1445 30-47 (66)
23 2csy_A Zinc finger protein 183 70.6 1.7 5.9E-05 41.1 2.1 31 1428-1480 30-60 (81)
24 2yur_A Retinoblastoma-binding 69.2 1.6 5.4E-05 40.8 1.4 30 1428-1477 31-60 (74)
25 2l0b_A E3 ubiquitin-protein li 68.6 1.6 5.3E-05 42.6 1.3 17 1428-1444 58-74 (91)
26 2ect_A Ring finger protein 126 68.0 0.45 1.5E-05 44.8 -2.6 17 1428-1444 33-49 (78)
27 1e4u_A Transcriptional repress 66.7 1.2 4.2E-05 42.3 0.1 30 1430-1480 32-61 (78)
28 2ecl_A Ring-box protein 2; RNF 65.7 1.8 6E-05 41.3 1.0 17 1428-1444 45-61 (81)
29 2djb_A Polycomb group ring fin 63.5 2.8 9.5E-05 38.8 1.9 18 1428-1445 31-48 (72)
30 3fl2_A E3 ubiquitin-protein li 63.2 2.4 8.4E-05 43.6 1.6 30 1428-1478 67-96 (124)
31 3ztg_A E3 ubiquitin-protein li 62.6 3.4 0.00012 40.0 2.4 31 1428-1478 29-59 (92)
32 2fc7_A ZZZ3 protein; structure 62.3 6.1 0.00021 38.0 4.0 44 117-161 26-74 (82)
33 3dpl_R Ring-box protein 1; ubi 62.2 2 6.9E-05 43.3 0.7 21 1425-1445 67-87 (106)
34 3lrq_A E3 ubiquitin-protein li 62.1 2.1 7E-05 42.5 0.7 29 1429-1478 39-67 (100)
35 3j20_W 30S ribosomal protein S 60.5 1.7 5.8E-05 39.4 -0.1 38 1916-1959 4-47 (63)
36 3nw0_A Non-structural maintena 58.1 3.1 0.00011 48.0 1.4 37 1430-1486 198-234 (238)
37 2dip_A Zinc finger SWIM domain 57.4 3.1 0.0001 41.4 1.0 42 117-162 36-77 (98)
38 2d8t_A Dactylidin, ring finger 56.8 1.3 4.4E-05 40.9 -1.7 17 1428-1444 30-46 (71)
39 2ckl_B Ubiquitin ligase protei 56.2 3.7 0.00013 44.4 1.6 18 1428-1445 70-87 (165)
40 1tot_A CREB-binding protein; z 56.0 3.5 0.00012 36.2 1.0 37 117-160 11-47 (52)
41 1fre_A Nuclear factor XNF7; zi 55.7 5.2 0.00018 33.0 2.0 36 116-157 4-39 (42)
42 1jm7_A BRCA1, breast cancer ty 55.4 3.6 0.00012 41.2 1.2 31 1428-1477 36-66 (112)
43 2ecn_A Ring finger protein 141 55.1 1.3 4.3E-05 40.7 -2.0 18 1428-1445 29-46 (70)
44 2egp_A Tripartite motif-contai 55.0 0.87 3E-05 42.8 -3.3 37 1428-1479 27-63 (79)
45 2y43_A E3 ubiquitin-protein li 54.8 3 0.0001 41.1 0.5 18 1428-1445 38-55 (99)
46 2e5r_A Dystrobrevin alpha; ZZ 52.2 6.5 0.00022 35.9 2.2 41 117-161 16-61 (63)
47 2did_A Tripartite motif protei 52.2 9 0.00031 33.3 3.1 41 115-161 8-48 (53)
48 4ayc_A E3 ubiquitin-protein li 50.6 3.7 0.00013 43.1 0.4 17 1428-1444 68-84 (138)
49 2ecj_A Tripartite motif-contai 49.5 2.4 8.1E-05 37.1 -1.1 18 1428-1445 30-47 (58)
50 4a0k_B E3 ubiquitin-protein li 49.1 3.6 0.00012 42.3 0.0 19 1428-1446 81-99 (117)
51 1qxf_A GR2, 30S ribosomal prot 49.0 3.7 0.00013 37.5 0.1 29 1931-1959 5-39 (66)
52 1t1h_A Gspef-atpub14, armadill 48.3 4.5 0.00015 37.8 0.5 18 1428-1445 23-40 (78)
53 3l11_A E3 ubiquitin-protein li 48.2 1.9 6.6E-05 43.7 -2.2 32 1428-1480 30-61 (115)
54 1z6u_A NP95-like ring finger p 47.7 5.4 0.00019 42.6 1.1 30 1428-1478 93-122 (150)
55 4ap4_A E3 ubiquitin ligase RNF 47.6 6.3 0.00022 40.4 1.6 18 1428-1445 94-111 (133)
56 3u5c_b RP61, YS20, 40S ribosom 45.9 4.1 0.00014 38.8 -0.2 38 1916-1959 23-66 (82)
57 2csv_A Tripartite motif protei 45.7 8.9 0.0003 35.6 2.1 38 115-159 18-55 (72)
58 2yvr_A Transcription intermedi 45.4 7.3 0.00025 33.4 1.4 40 114-159 5-44 (50)
59 2yrg_A Tripartite motif-contai 45.0 13 0.00043 33.3 2.9 40 116-161 15-54 (59)
60 2ckl_A Polycomb group ring fin 44.8 5.1 0.00017 40.1 0.3 30 1428-1479 31-60 (108)
61 4ap4_A E3 ubiquitin ligase RNF 44.3 6.2 0.00021 40.4 0.9 18 1428-1445 29-46 (133)
62 2ysj_A Tripartite motif-contai 43.8 7.2 0.00025 34.8 1.2 18 1428-1445 35-52 (63)
63 2dja_A Midline-2; tripartite m 41.8 6.9 0.00024 37.4 0.7 39 116-159 19-57 (84)
64 2d8s_A Cellular modulator of i 38.7 13 0.00044 35.5 2.0 29 1432-1480 41-69 (80)
65 4b6d_A RAC GTPase-activating p 35.1 17 0.0006 32.9 2.2 21 116-136 23-43 (61)
66 2d8u_A Ubiquitin ligase TRIM63 34.7 11 0.00039 33.9 0.9 40 115-159 8-47 (64)
67 3hct_A TNF receptor-associated 32.9 11 0.00039 38.2 0.7 18 1428-1445 33-50 (118)
68 2xzm_6 RPS27E; ribosome, trans 32.7 9.8 0.00034 36.2 0.2 37 1916-1958 21-63 (81)
69 3iz6_X 40S ribosomal protein S 32.5 11 0.00038 36.2 0.5 38 1916-1959 25-68 (86)
70 4ic3_A E3 ubiquitin-protein li 31.9 9.8 0.00034 35.4 0.0 32 1428-1485 39-71 (74)
71 3ddt_A E3 ubiquitin-protein li 31.8 14 0.00046 31.5 0.9 39 116-159 7-45 (48)
72 1wim_A KIAA0161 protein; ring 31.2 23 0.0008 34.3 2.6 38 1428-1479 23-62 (94)
73 3mjh_B Early endosome antigen 30.6 12 0.00041 30.0 0.3 8 1470-1477 6-13 (34)
74 1rmd_A RAG1; V(D)J recombinati 30.2 18 0.00061 36.5 1.6 19 1428-1446 38-56 (116)
75 2egm_A Tripartite motif-contai 29.2 9.8 0.00034 33.8 -0.5 39 114-158 17-55 (57)
76 1jm7_B BARD1, BRCA1-associated 26.8 7.6 0.00026 39.5 -1.9 26 1429-1478 39-64 (117)
77 1wiv_A UBP14, ubiquitin-specif 26.7 65 0.0022 30.2 4.6 45 2-46 16-69 (73)
78 2y1n_A E3 ubiquitin-protein li 26.5 26 0.00091 43.0 2.5 37 1428-1485 347-383 (389)
79 2ecg_A Baculoviral IAP repeat- 24.6 23 0.00078 32.9 1.1 33 1428-1486 40-73 (75)
80 3k1l_B Fancl; UBC, ring, RWD, 23.1 20 0.00068 43.2 0.5 39 1428-1477 331-369 (381)
81 2d8v_A Zinc finger FYVE domain 23.0 44 0.0015 30.6 2.5 35 123-160 14-52 (67)
82 3knv_A TNF receptor-associated 21.2 16 0.00053 38.6 -0.9 29 1428-1477 46-74 (141)
83 1bor_A Transcription factor PM 20.7 8.7 0.0003 33.7 -2.5 15 1428-1442 21-35 (56)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.92 E-value=5.7e-26 Score=213.25 Aligned_cols=72 Identities=42% Similarity=1.112 Sum_probs=66.9
Q ss_pred CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000140 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK 185 (2060)
Q Consensus 114 ~~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~ 185 (2060)
..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||+||||+++||++|.
T Consensus 3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 4679999999999999999999999999999999999999999999884 78999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.90 E-value=5e-25 Score=209.83 Aligned_cols=73 Identities=32% Similarity=0.769 Sum_probs=68.9
Q ss_pred CCCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec---CCccccCCCcccccccCCCCcCC
Q 000140 113 GQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT---GGGCCDCGDVTAWKREGFCSRHK 185 (2060)
Q Consensus 113 ~~~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~---~gG~CDCGd~~awk~~~fC~~H~ 185 (2060)
-..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|..+ +||+|||||++|||+++||++|.
T Consensus 6 h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 6 HTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred cCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 45689999999999999999999999999999999999999999999864 68999999999999999999884
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.6e-10 Score=107.82 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000140 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2060)
Q Consensus 869 ~lr~EIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2060)
-+|..|||.||++|.+.+||...|..+... ...|+.||++||.+.++ +|.|+||+++|.|+++.+++|+..|+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~----~~~y~Lk~~~~~eVq~dWp~Yte~er 88 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSK----DLSYTLKDYVFKELQRDWPGYSEIDR 88 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT----TTEEEECSTHHHHSCTTCTTCCTTHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc----CCeeehhHHHHHHhccCCCCCCHHHH
Confidence 499999999999999999999999887644 45799999999999874 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000140 946 QVAEERYLR 954 (2060)
Q Consensus 946 q~aeer~~r 954 (2060)
|..+.++.+
T Consensus 89 q~v~r~L~~ 97 (100)
T 2e5n_A 89 RSLESVLSR 97 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988666543
No 4
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.83 E-value=2.2e-09 Score=105.94 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000140 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2060)
Q Consensus 869 ~lr~EIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2060)
-+|+.|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|.|+|+.+++|+..|+
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~----~~~y~Lk~~~y~eVq~dWp~Yte~er 87 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ 87 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----CCeeeehHHHHHHhcCCCCCCCHHHH
Confidence 389999999999999999999999887644 45799999999999864 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000140 946 QVAEERYLR 954 (2060)
Q Consensus 946 q~aeer~~r 954 (2060)
|..+.+..+
T Consensus 88 q~v~r~l~~ 96 (104)
T 2doa_A 88 QLLKRVLVR 96 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988666543
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.01 E-value=0.079 Score=50.10 Aligned_cols=38 Identities=29% Similarity=0.659 Sum_probs=27.3
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCCC
Q 000140 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALP 1487 (2060)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPilp 1487 (2060)
.|||.+|..|+.+|+++ + +.=.||+||+.-..-+|-+|
T Consensus 33 ~C~h~fH~~Ci~kWl~~---~-----------------~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQS---N-----------------AEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSCCEECHHHHHHHSTT---C-----------------SSCCCTTTCSCCCSCCCCCC
T ss_pred CCCchhhHHHHHHHHHh---c-----------------CCCCCCCCcCcCCCCCCCCC
Confidence 89999999999999852 1 01149999976555555443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.62 E-value=0.59 Score=42.88 Aligned_cols=37 Identities=32% Similarity=0.743 Sum_probs=27.6
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecC
Q 000140 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2060)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPi 1485 (2060)
....|||..|..|+..+++. + + .||+||.--+..+|.
T Consensus 31 ~~~~C~H~fc~~Ci~~~~~~-------~----~-----------~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 31 RRLPCMHLFHQVCVDQWLIT-------N----K-----------KCPICRVDIEAQLPS 67 (69)
T ss_dssp EECTTSCEEEHHHHHHHHHH-------C----S-----------BCTTTCSBSCSCCCC
T ss_pred EEeCCCCHHHHHHHHHHHHc-------C----C-----------CCcCcCccccCcCCC
Confidence 35679999999999998753 0 0 299999876666553
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.30 E-value=0.34 Score=49.18 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=27.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccce
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSV 1482 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~ 1482 (2060)
+..|||..|..|+..++..-. ..+...||+||+.-...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----------------~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----------------KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----------------CSSCCBCTTTCCBSSSC
T ss_pred cCCCCCcccHHHHHHHHHccc-----------------CCCCCcCCCCCCccCCC
Confidence 677999999999999973210 02346799999865443
No 8
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=81.09 E-value=0.35 Score=44.84 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHccccCCCCCCcceEEeehhhh
Q 000140 898 KFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYW 930 (2060)
Q Consensus 898 ~~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~ 930 (2060)
.+.-+-+||++||+|.. +|...|+|+|||||-
T Consensus 35 P~~yLKeiL~~Ia~~~k-~g~~~~~weLKpEyr 66 (69)
T 1bby_A 35 PVVYLKEILKEIGVQNV-KGIHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHHHHHCCCBC-CTTCCCBBCCCCSSC
T ss_pred cHHHHHHHHHHHHHHHc-CCCCCCeeeCcHHHh
Confidence 34568999999999986 456789999999974
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=80.13 E-value=0.41 Score=41.71 Aligned_cols=18 Identities=28% Similarity=0.879 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|++++++
T Consensus 24 ~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 24 VLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp ECTTSCEEETTHHHHHHH
T ss_pred ecCCCCcccHHHHHHHHH
Confidence 667999999999999865
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.78 E-value=0.45 Score=42.69 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|.+|++++++
T Consensus 25 ~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 25 STECGHVFCSQCLRDSLK 42 (64)
T ss_dssp EETTSCEEEHHHHHHHHH
T ss_pred eCCCCCchhHHHHHHHHH
Confidence 678999999999999975
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.71 E-value=0.61 Score=44.77 Aligned_cols=32 Identities=31% Similarity=0.864 Sum_probs=25.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+..|||..|..|++++++.- .+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASS-------------------INGVRCPFCSKI 65 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHC-------------------SSCBCCTTTCCC
T ss_pred ECCCCChhhHHHHHHHHHcC-------------------CCCcCCCCCCCc
Confidence 55799999999999997531 135789999975
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.48 E-value=0.69 Score=42.11 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccChHhhHHHHHHHHH
Q 000140 1427 HLSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~ 1445 (2060)
.+..|||..|..|++++++
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp EECSSSCEEEHHHHHHHHH
T ss_pred EeCCCCChhcHHHHHHHHH
Confidence 3678999999999999975
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=77.48 E-value=0.72 Score=42.38 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|++++++
T Consensus 32 ~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLK 49 (71)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred eCCCCChHhHHHHHHHHH
Confidence 678999999999999974
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.65 E-value=0.83 Score=43.31 Aligned_cols=37 Identities=35% Similarity=0.618 Sum_probs=27.7
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsN 1480 (2060)
+..|||..|..|+..|+..-... .+.+.||+||.--.
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~----------------~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSMLD----------------KGESSCPVCRISYQ 70 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHHT----------------TSCCCCTTTCCSSC
T ss_pred eCCCCCHHHHHHHHHHHHHhhcC----------------CCCCcCCCCCCccC
Confidence 44799999999999998763311 24678999997643
No 15
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.00 E-value=0.41 Score=44.81 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=15.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
...|||..|..|..++++
T Consensus 41 ~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp EETTTEEEETTHHHHHHH
T ss_pred EECCCCHhHHHHHHHHHH
Confidence 446999999999999863
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.67 E-value=0.93 Score=41.33 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=29.4
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000140 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2060)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPil 1486 (2060)
.+..|||..|..|..++++. + ..||+||+--+.+++.+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ------------N----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH------------S----------CSTTTTCCCCCCEECCC
T ss_pred EecCCCCeeHHHHHHHHHhC------------c----------CcCcCCChhhHhhhhcc
Confidence 36679999999999998731 0 26999998877776665
No 17
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.06 E-value=1.1 Score=41.55 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+-.|||..|..|+.++++
T Consensus 33 ~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp EETTTEEEEHHHHHHHHH
T ss_pred EcCCCCEecHHHHHHHHH
Confidence 336999999999999873
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.60 E-value=0.76 Score=42.50 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.6
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+-.|||..|..|+.++++. ..+...||+||.-
T Consensus 35 ~~~CgH~fC~~Ci~~~~~~-------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 35 TIDCGHNFCLKCITQIGET-------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp ECTTCCEEEHHHHHHHCSS-------------------SCSCCCCSSSCCC
T ss_pred EcCCCChhhHHHHHHHHHc-------------------CCCCCCCCCCCCc
Confidence 3489999999999998650 0245689999974
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.80 E-value=0.62 Score=40.63 Aligned_cols=17 Identities=41% Similarity=1.099 Sum_probs=14.4
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
+..|||..|.+|.++++
T Consensus 24 ~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 24 LPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CSSSCCEECTTHHHHTT
T ss_pred CCCCCCcccHHHHHHHH
Confidence 33599999999998875
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.77 E-value=1.4 Score=40.00 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.7
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|.++++.
T Consensus 23 ~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp ECTTCCCEEHHHHHHHHH
T ss_pred cCCCCCHhHHHHHHHHHH
Confidence 568999999999998864
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.61 E-value=1.1 Score=42.49 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=26.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+..|||..|..|+.+|++... .+.+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~----------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNR----------------NTDGKGNCPVCRVP 68 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSB----------------CTTSCBCCTTTCCC
T ss_pred eCCCCCHHHHHHHHHHHHhcc----------------CCCCCCCCCCCCCc
Confidence 556999999999999975421 12356889999974
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.05 E-value=1.3 Score=40.20 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 30 QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCSSSCCCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999975
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.56 E-value=1.7 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsN 1480 (2060)
+..|||..|..|+.++++. ...||+||.--+
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 30 VTKCRHYFCESCALEHFRA----------------------TPRCYICDQPTG 60 (81)
T ss_dssp ECTTSCEEEHHHHHHHHHH----------------------CSBCSSSCCBCC
T ss_pred EccCCCHhHHHHHHHHHHC----------------------CCcCCCcCcccc
Confidence 5689999999999999752 125999998765
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=69.19 E-value=1.6 Score=40.76 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=23.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1477 (2060)
+..|||..|..|++++++.. +.+.||+||.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~--------------------~~~~CP~Cr~ 60 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLES--------------------DEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHS--------------------SSSCCSSSCC
T ss_pred cCCCCCHHHHHHHHHHHHhc--------------------CCCcCCCCCC
Confidence 44599999999999998630 2357999999
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.65 E-value=1.6 Score=42.61 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=14.7
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
...|||..|..|...++
T Consensus 58 ~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 58 ELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EETTTEEEEHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHH
Confidence 44599999999999886
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.01 E-value=0.45 Score=44.81 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
+..|||..|..|..+++
T Consensus 33 ~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp ECTTSCEEETTTTHHHH
T ss_pred EeCCCCeecHHHHHHHH
Confidence 44699999999999986
No 27
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=66.73 E-value=1.2 Score=42.34 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=22.9
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000140 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2060)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsN 1480 (2060)
.|||..+..|+.++.+ .+.+.||+||.--.
T Consensus 32 ~CGH~fC~~Cl~~~~~---------------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT---------------------DENGLCPACRKPYP 61 (78)
T ss_dssp TTSCCCCHHHHHHHTT---------------------SSCSBCTTTCCBCS
T ss_pred CCCCCcCHHHHHHHHh---------------------cCCCCCCCCCCccC
Confidence 4999999999987632 13478999998543
No 28
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.67 E-value=1.8 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.1
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
+..|||..|.+|..+++
T Consensus 45 ~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred eCCCCCccChHHHHHHH
Confidence 55699999999999986
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.54 E-value=2.8 Score=38.77 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||.-|..|..++++
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp CSSSCCEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999985
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=63.22 E-value=2.4 Score=43.56 Aligned_cols=30 Identities=40% Similarity=0.812 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+..|||..|..|+..++. . +.+.||+||.-
T Consensus 67 ~~~CgH~fC~~Ci~~~~~----~-----------------~~~~CP~Cr~~ 96 (124)
T 3fl2_A 67 TTVCQHNVCKDCLDRSFR----A-----------------QVFSCPACRYD 96 (124)
T ss_dssp ECTTSCEEEHHHHHHHHH----T-----------------TCCBCTTTCCB
T ss_pred EeeCCCcccHHHHHHHHh----H-----------------CcCCCCCCCcc
Confidence 458999999999999876 0 23579999974
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=62.61 E-value=3.4 Score=39.99 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+..|||..+..|+..++.. .+.+.||+||.-
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQN 59 (92)
T ss_dssp CTTTCCEECHHHHHHHHHH--------------------CTTCCCTTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHh--------------------cCCCcCcCCCCc
Confidence 4449999999999998752 123689999963
No 32
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=62.27 E-value=6.1 Score=38.01 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=31.9
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCC----CCC-CCceeEEEe
Q 000140 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQN----GNH-KEHDYSIIY 161 (2060)
Q Consensus 117 ~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~----~~H-~~H~~~~~~ 161 (2060)
.|+..--.| +-|+|.+|.-+...-||..||.. ..| ..|.+..+.
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 365432223 67999999765667899999975 578 589998775
No 33
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=62.23 E-value=2 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=17.2
Q ss_pred CccccccChHhhHHHHHHHHH
Q 000140 1425 GIHLSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1425 gvh~SsCGH~MH~~C~~~Y~~ 1445 (2060)
.+....|||..|..|...++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT
T ss_pred eEeecccCcEECHHHHHHHHH
Confidence 344678999999999999854
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=62.11 E-value=2.1 Score=42.53 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=23.8
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
..|||.-|..|+.++++.- .+.||+||.-
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~---------------------~~~CP~Cr~~ 67 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQ---------------------RAQCPHCRAP 67 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHT---------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHHC---------------------cCCCCCCCCc
Confidence 7899999999999987531 1679999974
No 35
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.52 E-value=1.7 Score=39.40 Aligned_cols=38 Identities=21% Similarity=0.573 Sum_probs=29.5
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000140 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2060)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1959 (2060)
+||+-|+.| +...+||.|++. ...++.|..||+++|.-
T Consensus 4 rLv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 4 PIIPMPRSR------FLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp GGCCCCSCC------EEEEECSSSCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ccccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccCcCCEEecC
Confidence 466666554 567899999874 67899999999988763
No 36
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.11 E-value=3.1 Score=48.01 Aligned_cols=37 Identities=30% Similarity=0.730 Sum_probs=26.5
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000140 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2060)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPil 1486 (2060)
+|||.+|..|+.+|+++ +++-.||.|+....-=.|-+
T Consensus 198 ~C~~~~H~~C~~~~~~~--------------------~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQS--------------------NAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp SSCCEECHHHHHHHTTT--------------------CSSCBCTTTCCBCCSCCCCC
T ss_pred ccChHHHHHHHHHHHHh--------------------CCCCCCCCCCCCCCCCCCCC
Confidence 49999999999999742 13456999988544444433
No 37
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=57.42 E-value=3.1 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=31.7
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec
Q 000140 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT 162 (2060)
Q Consensus 117 ~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~ 162 (2060)
.|+..--.| .-|+|..|. ..-+|.+||..+.|.+|.|..+..
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 466532223 679999995 366999999999999999976543
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.83 E-value=1.3 Score=40.95 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.2
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
+..|||..|..|+.+++
T Consensus 30 ~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp EETTTEEEEHHHHHHCT
T ss_pred EccCCCHHHHHHHHHHH
Confidence 44699999999998775
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=56.17 E-value=3.7 Score=44.38 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.8
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|+.+++.
T Consensus 70 ~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 70 TKECLHRFCADCIITALR 87 (165)
T ss_dssp ETTTCCEEEHHHHHHHHH
T ss_pred eCCCCChhHHHHHHHHHH
Confidence 448999999999999975
No 40
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=56.00 E-value=3.5 Score=36.23 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=28.5
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEE
Q 000140 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 160 (2060)
Q Consensus 117 ~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~ 160 (2060)
.|++.. | .-|+|..|. ..-+|..||..+.| +|....+
T Consensus 11 ~C~~~i--g-~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV--E-TRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE--S-SEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC--c-ceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 466653 3 679999996 46699999999999 7877554
No 41
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=55.75 E-value=5.2 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=26.2
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCcee
Q 000140 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDY 157 (2060)
Q Consensus 116 ~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~ 157 (2060)
..|+.-- ....|-|.+|+ ..+|..|+..+.|+||++
T Consensus 4 ~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~ 39 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDG----TLSCVICRDSLKHASHNF 39 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSS----SSSCCTTSSCSSCTTCCC
T ss_pred ccchhhC--CeeeEEeCCCC----eEEeccCCCCCCCCCCcE
Confidence 4576663 34556677654 459999999999999986
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.43 E-value=3.6 Score=41.25 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=24.3
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1477 (2060)
+..|||..|..|..++++.- .+.+.||+||.
T Consensus 36 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 36 STKCDHIFCKFCMLKLLNQK-------------------KGPSQCPLCKN 66 (112)
T ss_dssp BCTTSCCCCSHHHHHHHHSS-------------------SSSCCCTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHhC-------------------CCCCCCcCCCC
Confidence 45799999999999987520 13478999997
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.14 E-value=1.3 Score=40.73 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|..+++.
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 29 ILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp EETTTEEECHHHHHHSSC
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 667999999999988653
No 44
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=55.04 E-value=0.87 Score=42.77 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLs 1479 (2060)
+-.|||..|..|+.+|++.-. ....+...||+||.--
T Consensus 27 ~l~CgH~fC~~Ci~~~~~~~~---------------~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 27 SLDCGHSLCRACITVSNKEAV---------------TSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCSSSCCCCHHHHSCCCCCCS---------------SSCCCCCCCSSSCCCC
T ss_pred ECCCCCHHHHHHHHHHHHhcc---------------cCCCCCCcCCCCCCcC
Confidence 347999999999998754210 0123578899999753
No 45
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=54.80 E-value=3 Score=41.05 Aligned_cols=18 Identities=22% Similarity=0.744 Sum_probs=15.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|+.+++.
T Consensus 38 ~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 38 IPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp CTTTCCEEEHHHHHHHHT
T ss_pred ECCCCCHhhHHHHHHHHH
Confidence 347999999999999974
No 46
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.19 E-value=6.5 Score=35.91 Aligned_cols=41 Identities=27% Similarity=0.671 Sum_probs=28.8
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCC----CC-CceeEEEe
Q 000140 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN----HK-EHDYSIIY 161 (2060)
Q Consensus 117 ~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~----H~-~H~~~~~~ 161 (2060)
.|++.--.| .-|+|.+|. ..-||..||..+. |+ .|.+..+.
T Consensus 16 ~C~~~pi~G-~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMMG-FRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSCS-CEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCcceec-ceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 466652223 779999995 3679999998775 74 78776653
No 47
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=52.16 E-value=9 Score=33.31 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=31.3
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000140 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2060)
Q Consensus 115 ~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 161 (2060)
...|..-- ...-|-|.+|+ ..+|..|+..+.|++|++.-..
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQ----EAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSC----SEECHHHHTSSTTTTSCEEECC
T ss_pred CCcChhhC--CeeeEEeCCCC----eEEeccccCCCCCCCCcEeeHH
Confidence 45787763 45677788775 4699999999999999986543
No 48
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.58 E-value=3.7 Score=43.09 Aligned_cols=17 Identities=18% Similarity=0.671 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYV 1444 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2060)
+-.|||..|..|...++
T Consensus 68 ~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 68 TLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred ECCCCCCccHHHHHHHH
Confidence 56799999999998875
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.47 E-value=2.4 Score=37.14 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 30 IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCSSCCCCCHHHHHHHTT
T ss_pred eCCCCCccCHHHHHHHHH
Confidence 457999999999999864
No 50
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=49.11 E-value=3.6 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=0.0
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVSS 1446 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2060)
...|||.-|..|...+++.
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------
T ss_pred cCCcCceEcHHHHHHHHHc
Confidence 5689999999999998654
No 51
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=48.97 E-value=3.7 Score=37.53 Aligned_cols=29 Identities=28% Similarity=0.775 Sum_probs=24.1
Q ss_pred HhhcccCCCCCC------CCCceEeeccCccccCC
Q 000140 1931 YIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2060)
Q Consensus 1931 ~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1959 (2060)
+.+.+||.|++. ...++.|..||+++|+-
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 456799999874 68899999999988873
No 52
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=48.27 E-value=4.5 Score=37.84 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||.-+..|..++++
T Consensus 23 ~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp EETTTEEEEHHHHHHHHT
T ss_pred EcCCCCeecHHHHHHHHH
Confidence 557999999999999974
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=48.21 E-value=1.9 Score=43.70 Aligned_cols=32 Identities=25% Similarity=0.731 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsN 1480 (2060)
+-.|||..+..|+.++++ .+.+.||+||.--.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 30 TLPCNHTLCKPCFQSTVE---------------------KASLCCPFCRRRVS 61 (115)
T ss_dssp ECTTSCEECHHHHCCCCC---------------------TTTSBCTTTCCBCH
T ss_pred EcCCCCHHhHHHHHHHHh---------------------HCcCCCCCCCcccC
Confidence 447999999999976642 13478999998543
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.70 E-value=5.4 Score=42.64 Aligned_cols=30 Identities=37% Similarity=0.791 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
+..|||.-+..|..+++.. +.+.||+||.-
T Consensus 93 ~~~CgH~fC~~Ci~~~~~~---------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 93 TTECFHNVCKDCLQRSFKA---------------------QVFSCPACRHD 122 (150)
T ss_dssp ECTTSCEEEHHHHHHHHHT---------------------TCCBCTTTCCB
T ss_pred EcCCCCchhHHHHHHHHHh---------------------CCCcCCCCCcc
Confidence 4689999999999999752 23579999975
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=47.60 E-value=6.3 Score=40.40 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
...|||..|..|.+++++
T Consensus 94 ~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLK 111 (133)
T ss_dssp EETTSBEEEHHHHHHHHH
T ss_pred eCCCCChhhHHHHHHHHH
Confidence 668999999999999874
No 56
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=45.91 E-value=4.1 Score=38.78 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=30.6
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000140 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2060)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1959 (2060)
+||+-|+.| +...+|+.|++. ...++.|..||+++|+-
T Consensus 23 ~Lv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 23 TLVQGPRSY------FLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp SSSCCCCCC------EEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred eeccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 577777654 567899999975 67899999999988873
No 57
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=45.68 E-value=8.9 Score=35.61 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=29.7
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000140 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2060)
Q Consensus 115 ~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2060)
...|..-- ...-|-|.+|+ ..+|..|+. +.|++|++.-
T Consensus 18 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVHG--KTMELFCQTDQ----TCICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTTC--CBCCEEESSSC----CEECHHHHH-TTTSSSCEEE
T ss_pred cCcCcccC--CceEEEeCCCC----eEEccccCC-CCCCCCCEec
Confidence 46787772 46778899887 368999998 9999999864
No 58
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=45.42 E-value=7.3 Score=33.43 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.2
Q ss_pred CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000140 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2060)
Q Consensus 114 ~~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2060)
....|+.--. ....|-|.+|+ ..+|..|.. +.|+||++.-
T Consensus 5 ~~~~C~~H~~-e~l~lfC~~~~----~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 5 RTVYCNVHKH-EPLVLFCESCD----TLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp CSCBCSSSTT-CBCCEEETTTT----EEECHHHHH-TTTTTCCEEE
T ss_pred CCCcCcCCCC-CCEEEEeCCCC----EEEecccCC-CcCCCCceec
Confidence 3455754422 34667899886 468999988 6999999854
No 59
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.99 E-value=13 Score=33.32 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000140 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2060)
Q Consensus 116 ~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 161 (2060)
..|..-- ...-|-|.+|+ ..+|..|+..+.|++|++.-..
T Consensus 15 ~~C~~H~--e~L~lfC~~d~----~~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDG----KVICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTC--CBCCEEETTTC----SEECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhC--ceeeeecCCCC----cEEecccCCCCcCCCCcEeeHH
Confidence 5687664 35667788775 3689999999999999986543
No 60
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=44.79 E-value=5.1 Score=40.11 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLs 1479 (2060)
+..|||.-|..|+.++++. ...||+||.--
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 31 IIECLHSFCKTCIVRYLET----------------------SKYCPICDVQV 60 (108)
T ss_dssp ETTTCCEEEHHHHHHHHTS----------------------CSBCTTTCCBS
T ss_pred eCCCCChhhHHHHHHHHHh----------------------CCcCcCCCccc
Confidence 3489999999999988642 04699999853
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=44.34 E-value=6.2 Score=40.44 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..|.+|+.++++
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 29 STECGHVFCSQCLRDSLK 46 (133)
T ss_dssp EETTCCEEEHHHHHHHHT
T ss_pred ecCCCChhhHHHHHHHHH
Confidence 678999999999999974
No 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.76 E-value=7.2 Score=34.80 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||.-|..|++++++
T Consensus 35 ~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 35 TIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp ECTTSSEECHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHH
Confidence 448999999999999986
No 63
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=41.79 E-value=6.9 Score=37.36 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=28.9
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000140 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2060)
Q Consensus 116 ~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2060)
..|..-= ....-|-|.+|+ ..+|..|+..+.|+||++.-
T Consensus 19 ~~C~~H~-~e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHE-NEKVNMYCVSDD----QLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCS-SSCCCEEETTTT----EEECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcC-CccccEEcCCCC----ceEcccCcCCCCCCCCCccC
Confidence 4575431 123678899887 46999999999999999754
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.66 E-value=13 Score=35.49 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.5
Q ss_pred ChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000140 1432 GHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2060)
Q Consensus 1432 GH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsN 1480 (2060)
+|..|.+|.++.+..- +...||+||.--+
T Consensus 41 ~h~fH~~Cl~~Wl~~~--------------------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--------------------DTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHH--------------------CCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhC--------------------CCCCCCCCCCeee
Confidence 4999999999998641 1347999998643
No 65
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=35.08 E-value=17 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.8
Q ss_pred ccccccccCCceeEEeccCCC
Q 000140 116 GVCGAVWGNNDIAYRCRTCEH 136 (2060)
Q Consensus 116 ~~Cg~v~~~~e~~y~C~~C~~ 136 (2060)
.+||+.|+-|-..|+|++|.+
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 578999988899999999985
No 66
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=34.68 E-value=11 Score=33.88 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=28.2
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000140 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2060)
Q Consensus 115 ~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2060)
...|..-=. ....|-|.+|+ ..+|..|...+.|++|++.-
T Consensus 8 ~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 8 HPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCSSCTT-CCCCSEESSSC----CCCCSHHHHSSSTTSSCEEC
T ss_pred CCcCcCcCC-CccceEcCcCC----ceeCccccCCCcCCCCCeeC
Confidence 345755411 23556788886 45899999989999999853
No 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.93 E-value=11 Score=38.22 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVS 1445 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2060)
+..|||..+..|+..+++
T Consensus 33 ~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 33 QTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred ECCcCChhhHHHHHHHHh
Confidence 457999999999999875
No 68
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=32.67 E-value=9.8 Score=36.21 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=29.7
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccC
Q 000140 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2060)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1958 (2060)
+||+=|+.| +...+|+.|++. ...++.|..||+++|+
T Consensus 21 ~Lv~~PnS~------Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 21 RLIQAPNSY------FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp SSSCCCSCC------EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeCCCCc------EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 567777654 467899999874 6789999999998887
No 69
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.46 E-value=11 Score=36.21 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=25.0
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000140 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2060)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1959 (2060)
+||+-|+.| +...+|+.|++. ....+.|..||+++|+-
T Consensus 25 ~Lv~~PnS~------Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 25 RLVQSPNSF------FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------C------EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred eeccCCCCc------EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 466666543 466899999874 67899999999998874
No 70
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.92 E-value=9.8 Score=35.44 Aligned_cols=32 Identities=22% Similarity=0.548 Sum_probs=24.8
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecC
Q 000140 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2060)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPi 1485 (2060)
+-.|||. ....|..+. ..||+||.--...+.+
T Consensus 39 ~~pCgH~~~C~~C~~~~--------------------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 39 FVPCGHLVTCKQCAEAV--------------------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp EETTCCBCCCHHHHTTC--------------------------SBCTTTCCBCSEEEEC
T ss_pred EcCCCChhHHHHhhhcC--------------------------ccCCCcCcCccCcEEE
Confidence 4579999 999996532 6799999876666655
No 71
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=31.82 E-value=14 Score=31.50 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=28.0
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000140 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2060)
Q Consensus 116 ~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2060)
..|..--+ ....+-|.+|. ..+|..|...+.|++|++.-
T Consensus 7 ~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 7 PMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp CBCSSSTT-SBCCEEETTTT----EEECHHHHHHSTTTTSCEEE
T ss_pred CcCCCCCC-ccccEEcCCCC----eeEcccccCCCcCCCCcEEe
Confidence 45664321 23667899886 47999999888999999753
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.16 E-value=23 Score=34.32 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=27.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccc--ccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPV--CRQLA 1479 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPL--CKsLs 1479 (2060)
+..|||.--.+||..|+++.-.. |. ...+.||. |+..+
T Consensus 23 l~~CgH~FC~~Cl~~~~~~~i~~--------g~------~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 23 IAQCQCIFCTLCLKQYVELLIKE--------GL------ETAISCPDAACPKQG 62 (94)
T ss_dssp ETTTTEEEEHHHHHHHHHHHHHH--------CS------CCCEECSCTTCSSCC
T ss_pred cCCCCCcccHHHHHHHHHHHhhc--------CC------cccccCccccCCCCC
Confidence 34699999999999999874321 11 14578999 99764
No 73
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.64 E-value=12 Score=30.00 Aligned_cols=8 Identities=50% Similarity=1.609 Sum_probs=7.0
Q ss_pred cccccccc
Q 000140 1470 FLCPVCRQ 1477 (2060)
Q Consensus 1470 FLCPLCKs 1477 (2060)
|+||+|+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 99999963
No 74
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=30.21 E-value=18 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.4
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDRYVSS 1446 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2060)
+..|||.-|..|+.++++.
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHH
T ss_pred EcCCCCcccHHHHHHHHhH
Confidence 4579999999999999764
No 75
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.24 E-value=9.8 Score=33.81 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=29.7
Q ss_pred CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeE
Q 000140 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2060)
Q Consensus 114 ~~~~Cg~v~~~~e~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~ 158 (2060)
....|..-- ....|-|.+|+ ..+|..|+..+.|++|++.
T Consensus 17 ~~~~C~~H~--e~L~lfC~~d~----~~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKHQ--EALKLFCEVDE----EAICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTTC--CBCCEEETTTT----EEECHHHHHSHHHHSSCEE
T ss_pred ccCcChhhC--ceeeEEcCCCC----cEEecccCCCCCCCCCcEe
Confidence 345687773 45667788765 5699999999999999874
No 76
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.82 E-value=7.6 Score=39.47 Aligned_cols=26 Identities=27% Similarity=0.717 Sum_probs=21.6
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000140 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2060)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1478 (2060)
..|||.-+..|..++++ ..||+||.-
T Consensus 39 ~~CgH~fC~~Ci~~~~~------------------------~~CP~Cr~~ 64 (117)
T 1jm7_B 39 GGCEHIFCSNCVSDCIG------------------------TGCPVCYTP 64 (117)
T ss_dssp CSSSCCBCTTTGGGGTT------------------------TBCSSSCCB
T ss_pred CCCCCHHHHHHHHHHhc------------------------CCCcCCCCc
Confidence 38999999999987743 569999986
No 77
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.72 E-value=65 Score=30.20 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHhcCCchhhhchh---------hHHHHhhhCCC
Q 000140 2 EIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYS---------GIVNFAKNDKS 46 (2060)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 46 (2060)
|||.|..++...+-+..+++|+..|++++...+- .++.|+-+|++
T Consensus 16 d~d~pl~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 16 DIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCCSCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CccCCCCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4566654434446677889999999999886543 46777777664
No 78
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.48 E-value=26 Score=43.02 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=27.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecC
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPi 1485 (2060)
...|||..|..|...++++ + .-.||+||+--....++
T Consensus 347 ~lpCGH~FC~~Ci~~wl~~---~------------------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTSWQES---E------------------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp EETTCCEECHHHHHHHHHH---T------------------CSBCTTTCCBCCEEEEC
T ss_pred EeCCCChhhHHHHHHHHhc---C------------------CCCCCCCCCccCCceeE
Confidence 6789999999999888653 0 12599999876665544
No 79
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.61 E-value=23 Score=32.92 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=24.5
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000140 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2060)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsLsNs~LPil 1486 (2060)
+.-|||. ....|.++ -..||+||.--...+++.
T Consensus 40 ~~pCgH~~~C~~C~~~--------------------------~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 40 FVPCGHLVTCKQCAEA--------------------------VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp CSSSCCCCBCHHHHHH--------------------------CSBCTTTCCBCCCCCBCC
T ss_pred EecCCCHHHHHHHhhC--------------------------CCCCccCCceecCcEEEe
Confidence 4579999 99999831 046999998776666653
No 80
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=23.07 E-value=20 Score=43.16 Aligned_cols=39 Identities=23% Similarity=0.660 Sum_probs=28.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1477 (2060)
...|||.-|..|..+.+++.... |. .++.-.| .||+||.
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~s---Rq------SFnvi~G--~CPyCr~ 369 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDG---KT------FLEVSFG--QCPFCKA 369 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSS---SC------TTTCCEE--ECTTTCC
T ss_pred CCccCCccchHHHHHHHHhCCCc---cc------cccccCC--CCCCCCC
Confidence 35899999999999999997632 21 2333334 5999998
No 81
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.98 E-value=44 Score=30.63 Aligned_cols=35 Identities=40% Similarity=0.824 Sum_probs=24.9
Q ss_pred cCCceeEEeccCCCCCCccccccccCCC----CCCCceeEEE
Q 000140 123 GNNDIAYRCRTCEHDPTCAICVPCFQNG----NHKEHDYSII 160 (2060)
Q Consensus 123 ~~~e~~y~C~~C~~d~t~~lC~~CF~~~----~H~~H~~~~~ 160 (2060)
-+.+.++||..|.-| ..|..||+.. +-++|+..-+
T Consensus 14 CneDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 14 CNEDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp TCSCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred eCCCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 345788999999866 7899999642 2356776543
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=21.19 E-value=16 Score=38.65 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000140 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1477 (2060)
...|||.-+..|+.++++ + +.+.||+||.
T Consensus 46 ~~~CgH~FC~~Ci~~~~~----~-----------------~~~~CP~Cr~ 74 (141)
T 3knv_A 46 QAQCGHRYCSFCLASILS----S-----------------GPQNCAACVH 74 (141)
T ss_dssp ECTTSCEEEHHHHHHHGG----G-----------------SCEECHHHHH
T ss_pred ECCCCCccCHHHHHHHHh----c-----------------CCCCCCCCCC
Confidence 568999999999999863 0 2267999997
No 83
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.74 E-value=8.7 Score=33.72 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=12.2
Q ss_pred ccccChHhhHHHHHH
Q 000140 1428 LSSCGHAVHQGCLDR 1442 (2060)
Q Consensus 1428 ~SsCGH~MH~~C~~~ 1442 (2060)
+..|||.-+..|..+
T Consensus 21 ~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 21 LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSTTSCCSBTTTCSS
T ss_pred EcCCCCcccHHHHcc
Confidence 556999999999655
Done!