Query 000142
Match_columns 2058
No_of_seqs 347 out of 628
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 7.6E-26 2.6E-30 212.5 4.9 72 112-183 3-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 6.4E-25 2.2E-29 209.1 6.1 73 111-183 6-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 7E-10 2.4E-14 108.5 6.0 82 867-952 13-97 (100)
4 2doa_A RNA polymerase II elong 98.8 1.8E-09 6.1E-14 106.5 5.5 81 867-951 12-95 (104)
5 2ct0_A Non-SMC element 1 homol 88.0 0.08 2.7E-06 50.1 -0.6 38 1428-1485 33-70 (74)
6 2kiz_A E3 ubiquitin-protein li 82.2 0.63 2.1E-05 42.7 2.5 37 1425-1483 31-67 (69)
7 1v87_A Deltex protein 2; ring- 81.0 0.36 1.2E-05 49.0 0.4 38 1426-1480 58-95 (114)
8 2ecm_A Ring finger and CHY zin 79.7 0.44 1.5E-05 41.6 0.5 18 1426-1443 24-41 (55)
9 2ct2_A Tripartite motif protei 78.3 0.64 2.2E-05 44.6 1.2 32 1426-1476 34-65 (88)
10 1bby_A RAP30; average structur 78.3 0.5 1.7E-05 43.9 0.4 32 896-928 35-66 (69)
11 2xeu_A Ring finger protein 4; 78.2 0.48 1.6E-05 42.5 0.3 18 1426-1443 25-42 (64)
12 3ng2_A RNF4, snurf, ring finge 76.7 0.76 2.6E-05 42.2 1.2 18 1426-1443 32-49 (71)
13 2ea6_A Ring finger protein 4; 76.7 0.74 2.5E-05 41.9 1.1 19 1425-1443 36-54 (69)
14 2ecv_A Tripartite motif-contai 76.4 0.86 2.9E-05 43.2 1.5 37 1426-1478 34-70 (85)
15 1chc_A Equine herpes virus-1 r 75.7 0.88 3E-05 41.5 1.3 38 1425-1484 20-57 (68)
16 1x4j_A Ring finger protein 38; 75.5 0.43 1.5E-05 44.7 -0.8 18 1426-1443 41-58 (75)
17 2ep4_A Ring finger protein 24; 75.0 1.2 3.9E-05 41.5 2.0 18 1426-1443 33-50 (74)
18 2ysl_A Tripartite motif-contai 73.2 0.79 2.7E-05 42.4 0.4 32 1426-1476 35-66 (73)
19 1iym_A EL5; ring-H2 finger, ub 72.2 0.65 2.2E-05 40.5 -0.5 17 1426-1442 24-40 (55)
20 2ecw_A Tripartite motif-contai 72.2 1.1 3.9E-05 42.4 1.2 35 1426-1476 34-68 (85)
21 1g25_A CDK-activating kinase a 72.0 1.4 5E-05 39.8 1.8 18 1426-1443 23-40 (65)
22 2ecy_A TNF receptor-associated 70.6 1.4 4.7E-05 40.1 1.3 18 1426-1443 30-47 (66)
23 2csy_A Zinc finger protein 183 69.9 1.8 6.3E-05 40.9 2.1 31 1426-1478 30-60 (81)
24 2dip_A Zinc finger SWIM domain 69.3 1.4 4.7E-05 43.9 1.1 42 115-160 36-77 (98)
25 2yur_A Retinoblastoma-binding 68.4 1.7 5.8E-05 40.6 1.5 30 1426-1475 31-60 (74)
26 2l0b_A E3 ubiquitin-protein li 68.1 1.6 5.6E-05 42.5 1.3 17 1426-1442 58-74 (91)
27 2ect_A Ring finger protein 126 67.4 0.47 1.6E-05 44.7 -2.6 17 1426-1442 33-49 (78)
28 2fc7_A ZZZ3 protein; structure 66.4 4.7 0.00016 38.8 4.1 44 115-159 26-74 (82)
29 1e4u_A Transcriptional repress 66.0 1.3 4.5E-05 42.2 0.1 30 1428-1478 32-61 (78)
30 2ecl_A Ring-box protein 2; RNF 65.0 1.9 6.4E-05 41.2 1.0 17 1426-1442 45-61 (81)
31 3fl2_A E3 ubiquitin-protein li 62.7 2.5 8.7E-05 43.4 1.6 30 1426-1476 67-96 (124)
32 2djb_A Polycomb group ring fin 62.6 2.9 0.0001 38.6 1.9 18 1426-1443 31-48 (72)
33 3ztg_A E3 ubiquitin-protein li 61.7 3.6 0.00012 39.8 2.4 31 1426-1476 29-59 (92)
34 3dpl_R Ring-box protein 1; ubi 61.4 2.1 7.3E-05 43.2 0.7 21 1423-1443 67-87 (106)
35 3lrq_A E3 ubiquitin-protein li 61.3 2.2 7.4E-05 42.4 0.7 29 1427-1476 39-67 (100)
36 3j20_W 30S ribosomal protein S 60.6 1.7 5.8E-05 39.4 -0.1 38 1914-1957 4-47 (63)
37 3nw0_A Non-structural maintena 58.1 3.1 0.00011 48.0 1.4 37 1428-1484 198-234 (238)
38 2e5r_A Dystrobrevin alpha; ZZ 57.6 4.8 0.00017 36.7 2.3 41 115-159 16-61 (63)
39 1tot_A CREB-binding protein; z 57.2 3.2 0.00011 36.5 1.0 37 115-158 11-47 (52)
40 1fre_A Nuclear factor XNF7; zi 56.7 4.9 0.00017 33.2 2.0 36 114-155 4-39 (42)
41 2d8t_A Dactylidin, ring finger 56.0 1.3 4.6E-05 40.8 -1.7 17 1426-1442 30-46 (71)
42 2ckl_B Ubiquitin ligase protei 55.6 3.9 0.00013 44.2 1.6 18 1426-1443 70-87 (165)
43 1jm7_A BRCA1, breast cancer ty 54.8 3.7 0.00013 41.1 1.2 31 1426-1475 36-66 (112)
44 2egp_A Tripartite motif-contai 54.5 0.9 3.1E-05 42.7 -3.3 37 1426-1477 27-63 (79)
45 2ecn_A Ring finger protein 141 54.4 1.3 4.5E-05 40.6 -2.0 18 1426-1443 29-46 (70)
46 2y43_A E3 ubiquitin-protein li 54.2 3.1 0.00011 40.9 0.5 18 1426-1443 38-55 (99)
47 2did_A Tripartite motif protei 52.2 9.4 0.00032 33.2 3.2 41 113-159 8-48 (53)
48 4ayc_A E3 ubiquitin-protein li 50.2 3.9 0.00014 42.9 0.5 17 1426-1442 68-84 (138)
49 2ecj_A Tripartite motif-contai 49.1 2.4 8.3E-05 37.1 -1.1 18 1426-1443 30-47 (58)
50 1qxf_A GR2, 30S ribosomal prot 49.0 3.7 0.00013 37.5 0.1 29 1929-1957 5-39 (66)
51 4a0k_B E3 ubiquitin-protein li 48.5 3.7 0.00013 42.2 0.0 19 1426-1444 81-99 (117)
52 3l11_A E3 ubiquitin-protein li 47.6 2 6.8E-05 43.6 -2.2 32 1426-1478 30-61 (115)
53 1t1h_A Gspef-atpub14, armadill 47.4 4.7 0.00016 37.7 0.5 18 1426-1443 23-40 (78)
54 1z6u_A NP95-like ring finger p 47.0 5.6 0.00019 42.5 1.1 30 1426-1476 93-122 (150)
55 4ap4_A E3 ubiquitin ligase RNF 46.9 6.5 0.00022 40.3 1.6 18 1426-1443 94-111 (133)
56 3u5c_b RP61, YS20, 40S ribosom 46.0 4.1 0.00014 38.8 -0.2 38 1914-1957 23-66 (82)
57 2csv_A Tripartite motif protei 44.3 9.6 0.00033 35.4 2.1 38 113-157 18-55 (72)
58 2ckl_A Polycomb group ring fin 44.2 5.2 0.00018 40.0 0.3 30 1426-1477 31-60 (108)
59 2yvr_A Transcription intermedi 43.8 7.3 0.00025 33.4 1.1 40 112-157 5-44 (50)
60 4ap4_A E3 ubiquitin ligase RNF 43.6 6.5 0.00022 40.3 0.9 18 1426-1443 29-46 (133)
61 2ysj_A Tripartite motif-contai 43.4 7.4 0.00025 34.7 1.2 18 1426-1443 35-52 (63)
62 2dja_A Midline-2; tripartite m 42.0 6.9 0.00024 37.4 0.8 39 114-157 19-57 (84)
63 2yrg_A Tripartite motif-contai 41.6 9 0.00031 34.3 1.4 40 114-159 15-54 (59)
64 2d8s_A Cellular modulator of i 38.5 13 0.00045 35.4 2.1 29 1430-1478 41-69 (80)
65 2d8u_A Ubiquitin ligase TRIM63 35.5 11 0.00037 34.0 0.9 41 112-157 7-47 (64)
66 4b6d_A RAC GTPase-activating p 33.2 20 0.00067 32.5 2.2 21 114-134 23-43 (61)
67 2xzm_6 RPS27E; ribosome, trans 32.7 9.8 0.00033 36.2 0.2 37 1914-1956 21-63 (81)
68 3ddt_A E3 ubiquitin-protein li 32.6 12 0.0004 31.9 0.6 40 113-157 6-45 (48)
69 3iz6_X 40S ribosomal protein S 32.5 11 0.00038 36.2 0.5 38 1914-1957 25-68 (86)
70 3hct_A TNF receptor-associated 32.3 12 0.0004 38.1 0.7 18 1426-1443 33-50 (118)
71 4ic3_A E3 ubiquitin-protein li 31.3 10 0.00035 35.3 0.0 32 1426-1483 39-71 (74)
72 1wim_A KIAA0161 protein; ring 30.6 24 0.00082 34.2 2.6 37 1427-1477 24-62 (94)
73 3mjh_B Early endosome antigen 30.3 12 0.00042 30.0 0.3 8 1468-1475 6-13 (34)
74 1rmd_A RAG1; V(D)J recombinati 29.7 19 0.00063 36.4 1.6 19 1426-1444 38-56 (116)
75 2egm_A Tripartite motif-contai 26.6 11 0.00037 33.5 -0.7 39 112-156 17-55 (57)
76 2y1n_A E3 ubiquitin-protein li 26.0 27 0.00094 42.9 2.5 37 1426-1483 347-383 (389)
77 1jm7_B BARD1, BRCA1-associated 25.7 8.2 0.00028 39.2 -1.9 26 1427-1476 39-64 (117)
78 2d8v_A Zinc finger FYVE domain 24.1 42 0.0014 30.8 2.6 35 121-158 14-52 (67)
79 2ecg_A Baculoviral IAP repeat- 24.1 24 0.00081 32.8 1.1 33 1426-1484 40-73 (75)
80 3k1l_B Fancl; UBC, ring, RWD, 23.1 20 0.00069 43.2 0.5 39 1426-1475 331-369 (381)
81 3knv_A TNF receptor-associated 20.6 16 0.00056 38.5 -0.8 29 1426-1475 46-74 (141)
82 1bor_A Transcription factor PM 20.3 9.1 0.00031 33.6 -2.4 15 1426-1440 21-35 (56)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.91 E-value=7.6e-26 Score=212.47 Aligned_cols=72 Identities=42% Similarity=1.112 Sum_probs=66.9
Q ss_pred CCCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000142 112 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK 183 (2058)
Q Consensus 112 ~~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~ 183 (2058)
..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||+||||+++||++|.
T Consensus 3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 4679999999999999999999999999999999999999999999874 78999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.90 E-value=6.4e-25 Score=209.13 Aligned_cols=73 Identities=32% Similarity=0.769 Sum_probs=68.9
Q ss_pred CCCCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEEec---CCccccCCCcccccccCCCCcCC
Q 000142 111 GQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT---GGGCCDCGDVTAWKREGFCSRHK 183 (2058)
Q Consensus 111 ~~~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~---~gG~CDCGd~~awk~~~fC~~H~ 183 (2058)
-..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|..+ +||+|||||++|||+++||++|.
T Consensus 6 h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 6 HTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred cCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 45689999999999999999999999999999999999999999999864 68999999999999999999884
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7e-10 Score=108.46 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000142 867 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 943 (2058)
Q Consensus 867 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 943 (2058)
-+|+.|||.||++|.+.+||...|..+... ...|+.||+|||++.++ +|.|+||+++|.|+++.+++|+..|+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~----~~~y~Lk~~~~~eVq~dWp~Yte~er 88 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSK----DLSYTLKDYVFKELQRDWPGYSEIDR 88 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT----TTEEEECSTHHHHSCTTCTTCCTTHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc----CCeeehhHHHHHHhccCCCCCCHHHH
Confidence 499999999999999999999999887644 45799999999999874 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000142 944 QVAEERYLR 952 (2058)
Q Consensus 944 q~aeer~~r 952 (2058)
|..+.++.+
T Consensus 89 q~v~r~L~~ 97 (100)
T 2e5n_A 89 RSLESVLSR 97 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988666543
No 4
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.85 E-value=1.8e-09 Score=106.54 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000142 867 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 943 (2058)
Q Consensus 867 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 943 (2058)
-+|+.|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|.|+|+.+++|+..|+
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~----~~~y~Lk~~~y~eVq~dWp~Yte~er 87 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ 87 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----CCeeeehHHHHHHhcCCCCCCCHHHH
Confidence 399999999999999999999999887644 45799999999999864 48999999999999999999999999
Q ss_pred HHHHHHHH
Q 000142 944 QVAEERYL 951 (2058)
Q Consensus 944 q~aeer~~ 951 (2058)
|..+.+..
T Consensus 88 q~v~r~l~ 95 (104)
T 2doa_A 88 QLLKRVLV 95 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98866654
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.99 E-value=0.08 Score=50.06 Aligned_cols=38 Identities=29% Similarity=0.659 Sum_probs=27.3
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecCCC
Q 000142 1428 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALP 1485 (2058)
Q Consensus 1428 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPilp 1485 (2058)
.|||.+|..|..+|+++ + +.=.||+||+--..-+|-+|
T Consensus 33 ~C~h~fH~~Ci~kWl~~---~-----------------~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQS---N-----------------AEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSCCEECHHHHHHHSTT---C-----------------SSCCCTTTCSCCCSCCCCCC
T ss_pred CCCchhhHHHHHHHHHh---c-----------------CCCCCCCCcCcCCCCCCCCC
Confidence 89999999999999842 1 01149999977555555443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.16 E-value=0.63 Score=42.69 Aligned_cols=37 Identities=32% Similarity=0.743 Sum_probs=27.5
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecC
Q 000142 1425 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1483 (2058)
Q Consensus 1425 h~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPi 1483 (2058)
....|||..|..|+..+++. + + .||+||.--+..+|.
T Consensus 31 ~~~~C~H~fc~~Ci~~~~~~-------~----~-----------~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 31 RRLPCMHLFHQVCVDQWLIT-------N----K-----------KCPICRVDIEAQLPS 67 (69)
T ss_dssp EECTTSCEEEHHHHHHHHHH-------C----S-----------BCTTTCSBSCSCCCC
T ss_pred EEeCCCCHHHHHHHHHHHHc-------C----C-----------CCcCcCccccCcCCC
Confidence 35679999999999998753 0 0 299999876666553
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.97 E-value=0.36 Score=49.02 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=27.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccce
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSV 1480 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~ 1480 (2058)
+..|||..|..|+..++..-. ..+...||+||+.-...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----------------~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----------------KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----------------CSSCCBCTTTCCBSSSC
T ss_pred cCCCCCcccHHHHHHHHHccc-----------------CCCCCcCCCCCCccCCC
Confidence 677999999999999973210 02346799999865443
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.68 E-value=0.44 Score=41.56 Aligned_cols=18 Identities=28% Similarity=0.879 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|++++++
T Consensus 24 ~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 24 VLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp ECTTSCEEETTHHHHHHH
T ss_pred ecCCCCcccHHHHHHHHH
Confidence 567999999999999865
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.33 E-value=0.64 Score=44.62 Aligned_cols=32 Identities=31% Similarity=0.864 Sum_probs=25.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||..|..|++++++.- .+...||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASS-------------------INGVRCPFCSKI 65 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHC-------------------SSCBCCTTTCCC
T ss_pred ECCCCChhhHHHHHHHHHcC-------------------CCCcCCCCCCCc
Confidence 55799999999999997531 135789999975
No 10
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=78.29 E-value=0.5 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHccccCCCCCCcceEEeehhhh
Q 000142 896 KFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYW 928 (2058)
Q Consensus 896 ~~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~ 928 (2058)
.+.-+-+||++||+|.. +|...|+|+|||||-
T Consensus 35 P~~yLKeiL~~Ia~~~k-~g~~~~~weLKpEyr 66 (69)
T 1bby_A 35 PVVYLKEILKEIGVQNV-KGIHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHHHHHCCCBC-CTTCCCBBCCCCSSC
T ss_pred cHHHHHHHHHHHHHHHc-CCCCCCeeeCcHHHh
Confidence 34568999999999986 356789999999974
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.23 E-value=0.48 Score=42.51 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|.+|++++++
T Consensus 25 ~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 25 STECGHVFCSQCLRDSLK 42 (64)
T ss_dssp EETTSCEEEHHHHHHHHH
T ss_pred eCCCCCchhHHHHHHHHH
Confidence 678999999999999975
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.69 E-value=0.76 Score=42.21 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|++++++
T Consensus 32 ~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLK 49 (71)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred eCCCCChHhHHHHHHHHH
Confidence 678999999999999974
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.67 E-value=0.74 Score=41.93 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccChHhhHHHHHHHHH
Q 000142 1425 HLSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1425 h~ssCGH~MH~~C~~~Y~~ 1443 (2058)
.+..|||..|..|++++++
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp EECSSSCEEEHHHHHHHHH
T ss_pred EeCCCCChhcHHHHHHHHH
Confidence 3678999999999999975
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.38 E-value=0.86 Score=43.20 Aligned_cols=37 Identities=35% Similarity=0.618 Sum_probs=27.7
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1478 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~N 1478 (2058)
+..|||..|..|+..|++.-... .+.+.||+||.--.
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~----------------~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSMLD----------------KGESSCPVCRISYQ 70 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHHT----------------TSCCCCTTTCCSSC
T ss_pred eCCCCCHHHHHHHHHHHHHhhcC----------------CCCCcCCCCCCccC
Confidence 44799999999999998763321 24678999997543
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.70 E-value=0.88 Score=41.52 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=29.3
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecCC
Q 000142 1425 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1484 (2058)
Q Consensus 1425 h~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPil 1484 (2058)
.+..|||..|..|..++++. + ..||+||+--+.+++.+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ------------N----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH------------S----------CSTTTTCCCCCCEECCC
T ss_pred EecCCCCeeHHHHHHHHHhC------------c----------CcCcCCChhhHhhhhcc
Confidence 36679999999999998731 0 26999998877776665
No 16
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.47 E-value=0.43 Score=44.66 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=15.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
...|||..|..|..++++
T Consensus 41 ~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp EETTTEEEETTHHHHHHH
T ss_pred EECCCCHhHHHHHHHHHH
Confidence 446999999999999863
No 17
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.96 E-value=1.2 Score=41.48 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+-.|||..|..|+.++++
T Consensus 33 ~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp EETTTEEEEHHHHHHHHH
T ss_pred EcCCCCEecHHHHHHHHH
Confidence 336999999999999873
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.23 E-value=0.79 Score=42.38 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.6
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||..|..|+.++++. ..+...||+||.-
T Consensus 35 ~~~CgH~fC~~Ci~~~~~~-------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 35 TIDCGHNFCLKCITQIGET-------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp ECTTCCEEEHHHHHHHCSS-------------------SCSCCCCSSSCCC
T ss_pred EcCCCChhhHHHHHHHHHc-------------------CCCCCCCCCCCCc
Confidence 4489999999999998650 0245689999974
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.23 E-value=0.65 Score=40.48 Aligned_cols=17 Identities=41% Similarity=1.099 Sum_probs=14.4
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
+..|||..|.+|.++++
T Consensus 24 ~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 24 LPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CSSSCCEECTTHHHHTT
T ss_pred CCCCCCcccHHHHHHHH
Confidence 33599999999998875
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.18 E-value=1.1 Score=42.35 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=26.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||..|..|+.+|++... .+.+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~----------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNR----------------NTDGKGNCPVCRVP 68 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSB----------------CTTSCBCCTTTCCC
T ss_pred eCCCCCHHHHHHHHHHHHhcc----------------CCCCCCCCCCCCCc
Confidence 556999999999999975421 12356889999974
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.99 E-value=1.4 Score=39.79 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.7
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|.++++.
T Consensus 23 ~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp ECTTCCCEEHHHHHHHHH
T ss_pred cCCCCCHhHHHHHHHHHH
Confidence 568999999999998864
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.65 E-value=1.4 Score=40.08 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 30 QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCSSSCCCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999975
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.85 E-value=1.8 Score=40.94 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1478 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~N 1478 (2058)
+..|||..|..|+.++++. ...||+||.--+
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 30 VTKCRHYFCESCALEHFRA----------------------TPRCYICDQPTG 60 (81)
T ss_dssp ECTTSCEEEHHHHHHHHHH----------------------CSBCSSSCCBCC
T ss_pred EccCCCHhHHHHHHHHHHC----------------------CCcCCCcCcccc
Confidence 5689999999999999752 125999998665
No 24
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=69.31 E-value=1.4 Score=43.90 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=32.1
Q ss_pred cccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEEec
Q 000142 115 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT 160 (2058)
Q Consensus 115 ~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~ 160 (2058)
.|+..--.| .-|+|..|. ..-+|..||..+.|.+|.|..+..
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 466543333 679999994 367999999999999999976544
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=68.42 E-value=1.7 Score=40.57 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=23.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1475 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1475 (2058)
+..|||..|..|.+++++.. +.+.||+||.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~--------------------~~~~CP~Cr~ 60 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLES--------------------DEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHS--------------------SSSCCSSSCC
T ss_pred cCCCCCHHHHHHHHHHHHhc--------------------CCCcCCCCCC
Confidence 44599999999999997630 2357999999
No 26
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.09 E-value=1.6 Score=42.47 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=14.7
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
...|||..|..|...++
T Consensus 58 ~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 58 ELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EETTTEEEEHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHH
Confidence 44599999999999886
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.40 E-value=0.47 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
+..|||..|..|..+++
T Consensus 33 ~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp ECTTSCEEETTTTHHHH
T ss_pred EeCCCCeecHHHHHHHH
Confidence 44699999999999986
No 28
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=66.40 E-value=4.7 Score=38.81 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.2
Q ss_pred cccccccCCCeeEEeccCCCCCCccccccccCC----CCC-CCceeEEEe
Q 000142 115 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQN----GNH-KEHDYSIIY 159 (2058)
Q Consensus 115 ~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~----~~H-~~H~~~~~~ 159 (2058)
.|+..--.| +-|+|.+|.-+...-||..||.. ..| ..|.+..+.
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 466532223 67999999765567899999975 578 589998775
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=65.98 E-value=1.3 Score=42.16 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=22.9
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccccc
Q 000142 1428 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1478 (2058)
Q Consensus 1428 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~N 1478 (2058)
.|||..+..|+.++.+ .+.+.||+||.--.
T Consensus 32 ~CGH~fC~~Cl~~~~~---------------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT---------------------DENGLCPACRKPYP 61 (78)
T ss_dssp TTSCCCCHHHHHHHTT---------------------SSCSBCTTTCCBCS
T ss_pred CCCCCcCHHHHHHHHh---------------------cCCCCCCCCCCccC
Confidence 4999999999987632 13578999998543
No 30
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.97 E-value=1.9 Score=41.18 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.1
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
+..|||..|.+|..+++
T Consensus 45 ~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred eCCCCCccChHHHHHHH
Confidence 55699999999999986
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=62.74 E-value=2.5 Score=43.44 Aligned_cols=30 Identities=40% Similarity=0.812 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||..|..|+..++. . +.+.||+||.-
T Consensus 67 ~~~CgH~fC~~Ci~~~~~----~-----------------~~~~CP~Cr~~ 96 (124)
T 3fl2_A 67 TTVCQHNVCKDCLDRSFR----A-----------------QVFSCPACRYD 96 (124)
T ss_dssp ECTTSCEEEHHHHHHHHH----T-----------------TCCBCTTTCCB
T ss_pred EeeCCCcccHHHHHHHHh----H-----------------CcCCCCCCCcc
Confidence 458999999999999876 0 23579999974
No 32
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.63 E-value=2.9 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|..++++
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp CSSSCCEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999985
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=61.72 E-value=3.6 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=23.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||..+..|+..++.. .+.+.||+||.-
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQN 59 (92)
T ss_dssp CTTTCCEECHHHHHHHHHH--------------------CTTCCCTTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHh--------------------cCCCcCcCCCCc
Confidence 4449999999999998751 123689999963
No 34
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=61.36 E-value=2.1 Score=43.16 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=17.2
Q ss_pred CccccccChHhhHHHHHHHHH
Q 000142 1423 GIHLSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1423 gvh~ssCGH~MH~~C~~~Y~~ 1443 (2058)
.+....|||..|..|...++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT
T ss_pred eEeecccCcEECHHHHHHHHH
Confidence 344678999999999999854
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=61.30 E-value=2.2 Score=42.36 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=23.8
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1427 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1427 ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
..|||.-|..|..++++.- .+.||+||.-
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~---------------------~~~CP~Cr~~ 67 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQ---------------------RAQCPHCRAP 67 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHT---------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHHC---------------------cCCCCCCCCc
Confidence 7899999999999987531 1679999974
No 36
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.59 E-value=1.7 Score=39.42 Aligned_cols=38 Identities=21% Similarity=0.573 Sum_probs=29.5
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000142 1914 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1957 (2058)
Q Consensus 1914 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1957 (2058)
+||+-|+.| +...+||.|++. ...++.|..||+++|.-
T Consensus 4 rLv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 4 PIIPMPRSR------FLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp GGCCCCSCC------EEEEECSSSCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ccccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccCcCCEEecC
Confidence 466666554 567899999874 67899999999988773
No 37
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.09 E-value=3.1 Score=47.98 Aligned_cols=37 Identities=30% Similarity=0.730 Sum_probs=26.6
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecCC
Q 000142 1428 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1484 (2058)
Q Consensus 1428 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPil 1484 (2058)
+|||.+|..|+.+|+++ +++-.||.|+....-=.|-+
T Consensus 198 ~C~~~~H~~C~~~~~~~--------------------~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQS--------------------NAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp SSCCEECHHHHHHHTTT--------------------CSSCBCTTTCCBCCSCCCCC
T ss_pred ccChHHHHHHHHHHHHh--------------------CCCCCCCCCCCCCCCCCCCC
Confidence 49999999999999742 13456999988544444443
No 38
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.60 E-value=4.8 Score=36.75 Aligned_cols=41 Identities=27% Similarity=0.671 Sum_probs=29.2
Q ss_pred cccccccCCCeeEEeccCCCCCCccccccccCCCC----CC-CceeEEEe
Q 000142 115 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN----HK-EHDYSIIY 159 (2058)
Q Consensus 115 ~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~----H~-~H~~~~~~ 159 (2058)
.|+..--.| .-|+|.+|. ..-||..||..+. |+ .|.+..+.
T Consensus 16 ~C~~~pi~G-~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMMG-FRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSCS-CEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCcceec-ceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 466652333 789999994 4679999998775 74 78776653
No 39
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=57.23 E-value=3.2 Score=36.49 Aligned_cols=37 Identities=22% Similarity=0.688 Sum_probs=28.5
Q ss_pred cccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEE
Q 000142 115 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 158 (2058)
Q Consensus 115 ~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~ 158 (2058)
.|++.. ..-|+|..|. ..-+|..||..+.| +|....+
T Consensus 11 ~C~~~i---g~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV---ETRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE---SSEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC---cceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 466653 3679999995 46699999999999 7887654
No 40
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=56.67 E-value=4.9 Score=33.17 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=26.3
Q ss_pred CcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCcee
Q 000142 114 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDY 155 (2058)
Q Consensus 114 ~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~ 155 (2058)
..|+.-- ....|-|.+|+ ..+|..|+..+.|+||++
T Consensus 4 ~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~ 39 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDG----TLSCVICRDSLKHASHNF 39 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSS----SSSCCTTSSCSSCTTCCC
T ss_pred ccchhhC--CeeeEEeCCCC----eEEeccCCCCCCCCCCcE
Confidence 4576653 34556677654 359999999999999986
No 41
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.03 E-value=1.3 Score=40.80 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.2
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
+..|||..|..|+.+++
T Consensus 30 ~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp EETTTEEEEHHHHHHCT
T ss_pred EccCCCHHHHHHHHHHH
Confidence 34699999999998774
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=55.59 E-value=3.9 Score=44.24 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.8
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|+.+++.
T Consensus 70 ~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 70 TKECLHRFCADCIITALR 87 (165)
T ss_dssp ETTTCCEEEHHHHHHHHH
T ss_pred eCCCCChhHHHHHHHHHH
Confidence 448999999999999975
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.76 E-value=3.7 Score=41.09 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1475 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1475 (2058)
+..|||..|..|..++++.- .+.+.||+||.
T Consensus 36 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 36 STKCDHIFCKFCMLKLLNQK-------------------KGPSQCPLCKN 66 (112)
T ss_dssp BCTTSCCCCSHHHHHHHHSS-------------------SSSCCCTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHhC-------------------CCCCCCcCCCC
Confidence 45799999999999987520 13478999997
No 44
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=54.47 E-value=0.9 Score=42.66 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1477 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~ 1477 (2058)
+..|||..|..|+.+|++.-. ....+...||+||.--
T Consensus 27 ~l~CgH~fC~~Ci~~~~~~~~---------------~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 27 SLDCGHSLCRACITVSNKEAV---------------TSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCSSSCCCCHHHHSCCCCCCS---------------SSCCCCCCCSSSCCCC
T ss_pred ECCCCCHHHHHHHHHHHHhcc---------------cCCCCCCcCCCCCCcC
Confidence 347999999999998753210 0123578899999753
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.43 E-value=1.3 Score=40.59 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=15.2
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|..+++.
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 29 ILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp EETTTEEECHHHHHHSSC
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 667999999999988653
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=54.20 E-value=3.1 Score=40.94 Aligned_cols=18 Identities=22% Similarity=0.744 Sum_probs=15.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|+.++++
T Consensus 38 ~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 38 IPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp CTTTCCEEEHHHHHHHHT
T ss_pred ECCCCCHhhHHHHHHHHH
Confidence 347999999999999974
No 47
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=52.21 E-value=9.4 Score=33.20 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=31.3
Q ss_pred CCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000142 113 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 159 (2058)
Q Consensus 113 ~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 159 (2058)
...|..-- ...-|-|.+|+ ..+|..|+..+.|++|++.-..
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQ----EAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSC----SEECHHHHTSSTTTTSCEEECC
T ss_pred CCcChhhC--CeeeEEeCCCC----eEEeccccCCCCCCCCcEeeHH
Confidence 45787664 45677788875 3699999999999999986543
No 48
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.16 E-value=3.9 Score=42.90 Aligned_cols=17 Identities=18% Similarity=0.671 Sum_probs=14.8
Q ss_pred ccccChHhhHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYV 1442 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~ 1442 (2058)
+-.|||..|..|...++
T Consensus 68 ~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 68 TLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred ECCCCCCccHHHHHHHH
Confidence 56799999999998875
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.11 E-value=2.4 Score=37.08 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 30 IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCSSCCCCCHHHHHHHTT
T ss_pred eCCCCCccCHHHHHHHHH
Confidence 457999999999999864
No 50
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=49.04 E-value=3.7 Score=37.54 Aligned_cols=29 Identities=28% Similarity=0.775 Sum_probs=24.1
Q ss_pred HhhcccCCCCCC------CCCceEeeccCccccCC
Q 000142 1929 YIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1957 (2058)
Q Consensus 1929 ~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1957 (2058)
+.+.+||.|++. ...++.|..||+++|+-
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 456799999874 68899999999988873
No 51
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=48.49 E-value=3.7 Score=42.17 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=0.0
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVSS 1444 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~S 1444 (2058)
...|||.-|..|...+++.
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------
T ss_pred cCCcCceEcHHHHHHHHHc
Confidence 4589999999999998654
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=47.55 E-value=2 Score=43.57 Aligned_cols=32 Identities=25% Similarity=0.731 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1478 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~N 1478 (2058)
+..|||..+..|+.++++ .+.+.||+||.--.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 30 TLPCNHTLCKPCFQSTVE---------------------KASLCCPFCRRRVS 61 (115)
T ss_dssp ECTTSCEECHHHHCCCCC---------------------TTTSBCTTTCCBCH
T ss_pred EcCCCCHHhHHHHHHHHh---------------------HCcCCCCCCCcccC
Confidence 447999999999976642 13478999998543
No 53
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=47.35 E-value=4.7 Score=37.67 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||.-+..|..++++
T Consensus 23 ~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp EETTTEEEEHHHHHHHHT
T ss_pred EcCCCCeecHHHHHHHHH
Confidence 557999999999999974
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.03 E-value=5.6 Score=42.50 Aligned_cols=30 Identities=37% Similarity=0.791 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
+..|||.-+..|...++.. +.+.||+||.-
T Consensus 93 ~~~CgH~fC~~Ci~~~~~~---------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 93 TTECFHNVCKDCLQRSFKA---------------------QVFSCPACRHD 122 (150)
T ss_dssp ECTTSCEEEHHHHHHHHHT---------------------TCCBCTTTCCB
T ss_pred EcCCCCchhHHHHHHHHHh---------------------CCCcCCCCCcc
Confidence 4689999999999999752 23579999974
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.91 E-value=6.5 Score=40.26 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
...|||..|..|.+++++
T Consensus 94 ~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLK 111 (133)
T ss_dssp EETTSBEEEHHHHHHHHH
T ss_pred eCCCCChhhHHHHHHHHH
Confidence 568999999999999874
No 56
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=45.98 E-value=4.1 Score=38.80 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=30.6
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000142 1914 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1957 (2058)
Q Consensus 1914 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1957 (2058)
+||+-|+.| +...+|+.|++. ...++.|..||+++|+-
T Consensus 23 ~Lv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 23 TLVQGPRSY------FLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp SSSCCCCCC------EEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred eeccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 577777654 567899999975 67899999999988873
No 57
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=44.30 E-value=9.6 Score=35.36 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=29.7
Q ss_pred CCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000142 113 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 157 (2058)
Q Consensus 113 ~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 157 (2058)
...|..-- ...-|-|.+|+. .+|..|+. +.|++|++.-
T Consensus 18 ~~~C~~H~--e~l~lfC~~d~~----~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVHG--KTMELFCQTDQT----CICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTTC--CBCCEEESSSCC----EECHHHHH-TTTSSSCEEE
T ss_pred cCcCcccC--CceEEEeCCCCe----EEccccCC-CCCCCCCEec
Confidence 46787772 467788998864 68999998 9999999864
No 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=44.19 E-value=5.2 Score=40.00 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1477 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~ 1477 (2058)
+..|||.-|..|+..+++. ...||+||.--
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 31 IIECLHSFCKTCIVRYLET----------------------SKYCPICDVQV 60 (108)
T ss_dssp ETTTCCEEEHHHHHHHHTS----------------------CSBCTTTCCBS
T ss_pred eCCCCChhhHHHHHHHHHh----------------------CCcCcCCCccc
Confidence 3489999999999988642 04699999843
No 59
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=43.78 E-value=7.3 Score=33.41 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.4
Q ss_pred CCCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000142 112 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 157 (2058)
Q Consensus 112 ~~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 157 (2058)
....|+.--. ....|-|.+|+ ..+|..|.. +.|+||++.-
T Consensus 5 ~~~~C~~H~~-e~l~lfC~~~~----~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 5 RTVYCNVHKH-EPLVLFCESCD----TLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp CSCBCSSSTT-CBCCEEETTTT----EEECHHHHH-TTTTTCCEEE
T ss_pred CCCcCcCCCC-CCEEEEeCCCC----EEEecccCC-CcCCCCceec
Confidence 3456764422 34667899986 468999988 6999999854
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=43.55 E-value=6.5 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..|.+|+.++++
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 29 STECGHVFCSQCLRDSLK 46 (133)
T ss_dssp EETTCCEEEHHHHHHHHT
T ss_pred ecCCCChhhHHHHHHHHH
Confidence 678999999999999974
No 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.41 E-value=7.4 Score=34.72 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||.-|..|++++++
T Consensus 35 ~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 35 TIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp ECTTSSEECHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHH
Confidence 448999999999999986
No 62
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=41.96 E-value=6.9 Score=37.37 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=28.9
Q ss_pred CcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000142 114 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 157 (2058)
Q Consensus 114 ~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 157 (2058)
..|..-=. ...-|-|.+|+ ..+|..|+..+.|+||++.-
T Consensus 19 ~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHEN-EKVNMYCVSDD----QLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCSS-SCCCEEETTTT----EEECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcCC-ccccEEcCCCC----ceEcccCcCCCCCCCCCccC
Confidence 45754311 23678899987 46999999999999999754
No 63
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.64 E-value=9 Score=34.30 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=30.4
Q ss_pred CcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000142 114 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 159 (2058)
Q Consensus 114 ~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 159 (2058)
..|..-- ...-|-|.+|+. .+|..|+..+.|++|++.-..
T Consensus 15 ~~C~~H~--e~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTC--CBCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhC--ceeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence 5687664 346677887754 689999999999999986543
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.54 E-value=13 Score=35.43 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.5
Q ss_pred ChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccccc
Q 000142 1430 GHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1478 (2058)
Q Consensus 1430 GH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~N 1478 (2058)
+|..|.+|.++.+..- +...||+||.--+
T Consensus 41 ~h~fH~~Cl~~Wl~~~--------------------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--------------------DTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHH--------------------CCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhC--------------------CCCCCCCCCCeee
Confidence 4999999999998641 1347999998643
No 65
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=35.51 E-value=11 Score=34.01 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=28.8
Q ss_pred CCCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000142 112 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 157 (2058)
Q Consensus 112 ~~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 157 (2058)
....|..--. ....|-|.+|+ ..+|..|...+.|++|++.-
T Consensus 7 ~~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 7 GHPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCCSSCTT-CCCCSEESSSC----CCCCSHHHHSSSTTSSCEEC
T ss_pred CCCcCcCcCC-CccceEcCcCC----ceeCccccCCCcCCCCCeeC
Confidence 3456765422 23556788886 35899999999999999854
No 66
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=33.22 E-value=20 Score=32.53 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.8
Q ss_pred CcccccccCCCeeEEeccCCC
Q 000142 114 GVCGAVWGNNDIAYRCRTCEH 134 (2058)
Q Consensus 114 ~~C~~v~~~ge~~y~C~~C~~ 134 (2058)
.+||+.|+-|-..|+|++|.+
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 478999988999999999986
No 67
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=32.72 E-value=9.8 Score=36.22 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=29.7
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccC
Q 000142 1914 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1956 (2058)
Q Consensus 1914 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1956 (2058)
+||+=|+.| +...+||.|++. ...++.|..||+++|+
T Consensus 21 ~Lv~~PnS~------Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 21 RLIQAPNSY------FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp SSSCCCSCC------EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeCCCCc------EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 567777654 467899999874 6789999999998887
No 68
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=32.57 E-value=12 Score=31.90 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=28.4
Q ss_pred CCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000142 113 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 157 (2058)
Q Consensus 113 ~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 157 (2058)
...|..--+ ....+-|.+|. ..+|..|...+.|++|++..
T Consensus 6 ~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 6 HPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp SCBCSSSTT-SBCCEEETTTT----EEECHHHHHHSTTTTSCEEE
T ss_pred CCcCCCCCC-ccccEEcCCCC----eeEcccccCCCcCCCCcEEe
Confidence 345764321 23567899886 46999999888999999754
No 69
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.51 E-value=11 Score=36.22 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=25.0
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceEeeccCccccCC
Q 000142 1914 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1957 (2058)
Q Consensus 1914 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1957 (2058)
+||+-|+.| +...+|+.|++. ....+.|..||+++|+-
T Consensus 25 ~Lv~~PnS~------Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 25 RLVQSPNSF------FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------C------EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred eeccCCCCc------EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 466666543 466899999874 67899999999998874
No 70
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.28 E-value=12 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVS 1443 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~ 1443 (2058)
+..|||..+..|+..+++
T Consensus 33 ~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 33 QTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred ECCcCChhhHHHHHHHHh
Confidence 457999999999999875
No 71
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.25 E-value=10 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.548 Sum_probs=24.8
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecC
Q 000142 1426 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1483 (2058)
Q Consensus 1426 ~ssCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPi 1483 (2058)
+--|||. ....|..+. ..||+||.--...+.+
T Consensus 39 ~~pCgH~~~C~~C~~~~--------------------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 39 FVPCGHLVTCKQCAEAV--------------------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp EETTCCBCCCHHHHTTC--------------------------SBCTTTCCBCSEEEEC
T ss_pred EcCCCChhHHHHhhhcC--------------------------ccCCCcCcCccCcEEE
Confidence 4579999 999996532 6799999876666655
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.63 E-value=24 Score=34.21 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=27.6
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccc--ccccc
Q 000142 1427 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPV--CRQLA 1477 (2058)
Q Consensus 1427 ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPL--CKsL~ 1477 (2058)
..|||.--.+||..|+++.-.. |. ...+.||. |+..+
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~--------g~------~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKE--------GL------ETAISCPDAACPKQG 62 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHH--------CS------CCCEECSCTTCSSCC
T ss_pred CCCCCcccHHHHHHHHHHHhhc--------CC------cccccCccccCCCCC
Confidence 4699999999999999874321 11 14578999 99764
No 73
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.32 E-value=12 Score=29.96 Aligned_cols=8 Identities=50% Similarity=1.609 Sum_probs=7.0
Q ss_pred cccccccc
Q 000142 1468 FLCPVCRQ 1475 (2058)
Q Consensus 1468 FLCPLCKs 1475 (2058)
|+||+|+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 99999963
No 74
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=29.72 E-value=19 Score=36.38 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.4
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDRYVSS 1444 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~S 1444 (2058)
+..|||.-|..|+.++++.
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHH
T ss_pred EcCCCCcccHHHHHHHHhH
Confidence 4579999999999998764
No 75
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.62 E-value=11 Score=33.54 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCcccccccCCCeeEEeccCCCCCCccccccccCCCCCCCceeE
Q 000142 112 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 156 (2058)
Q Consensus 112 ~~~~C~~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~ 156 (2058)
....|..-- ....|-|.+|+ ..+|..|+..+.|++|++.
T Consensus 17 ~~~~C~~H~--e~L~lfC~~d~----~~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKHQ--EALKLFCEVDE----EAICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTTC--CBCCEEETTTT----EEECHHHHHSHHHHSSCEE
T ss_pred ccCcChhhC--ceeeEEcCCCC----cEEecccCCCCCCCCCcEe
Confidence 345687773 45667788765 4699999999999999874
No 76
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.01 E-value=27 Score=42.89 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=27.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecC
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1483 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPi 1483 (2058)
...|||..|..|...++++ + .-.||+||+--....++
T Consensus 347 ~lpCGH~FC~~Ci~~wl~~---~------------------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTSWQES---E------------------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp EETTCCEECHHHHHHHHHH---T------------------CSBCTTTCCBCCEEEEC
T ss_pred EeCCCChhhHHHHHHHHhc---C------------------CCCCCCCCCccCCceeE
Confidence 6789999999999888653 0 12599999876665544
No 77
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.68 E-value=8.2 Score=39.22 Aligned_cols=26 Identities=27% Similarity=0.717 Sum_probs=21.5
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCcccccccccc
Q 000142 1427 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1476 (2058)
Q Consensus 1427 ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL 1476 (2058)
..|||.-+..|..++++ ..||+||.-
T Consensus 39 ~~CgH~fC~~Ci~~~~~------------------------~~CP~Cr~~ 64 (117)
T 1jm7_B 39 GGCEHIFCSNCVSDCIG------------------------TGCPVCYTP 64 (117)
T ss_dssp CSSSCCBCTTTGGGGTT------------------------TBCSSSCCB
T ss_pred CCCCCHHHHHHHHHHhc------------------------CCCcCCCCc
Confidence 38999999999977643 569999986
No 78
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.08 E-value=42 Score=30.78 Aligned_cols=35 Identities=40% Similarity=0.824 Sum_probs=25.1
Q ss_pred cCCCeeEEeccCCCCCCccccccccCCC----CCCCceeEEE
Q 000142 121 GNNDIAYRCRTCEHDPTCAICVPCFQNG----NHKEHDYSII 158 (2058)
Q Consensus 121 ~~ge~~y~C~~C~~d~t~~lC~~CF~~~----~H~~H~~~~~ 158 (2058)
-+.+.++||..|.-| ..|..||+.. +-++|+..-+
T Consensus 14 CneDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 14 CNEDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp TCSCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred eCCCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 345788999999866 7899999642 2356776544
No 79
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=24 Score=32.81 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=24.5
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccccccceecCC
Q 000142 1426 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1484 (2058)
Q Consensus 1426 ~ssCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKsL~Ns~LPil 1484 (2058)
+.-|||. ....|.++ -..||+||.--...+++.
T Consensus 40 ~~pCgH~~~C~~C~~~--------------------------~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 40 FVPCGHLVTCKQCAEA--------------------------VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp CSSSCCCCBCHHHHHH--------------------------CSBCTTTCCBCCCCCBCC
T ss_pred EecCCCHHHHHHHhhC--------------------------CCCCccCCceecCcEEEe
Confidence 4579999 99999831 046999998776666653
No 80
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=23.06 E-value=20 Score=43.15 Aligned_cols=39 Identities=23% Similarity=0.660 Sum_probs=28.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1475 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1475 (2058)
...|||.-|..|..+.+++.... |. .++.-.| .||+||.
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~s---Rq------SFnvi~G--~CPyCr~ 369 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDG---KT------FLEVSFG--QCPFCKA 369 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSS---SC------TTTCCEE--ECTTTCC
T ss_pred CCccCCccchHHHHHHHHhCCCc---cc------cccccCC--CCCCCCC
Confidence 35899999999999999997632 21 2333333 5999998
No 81
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=20.61 E-value=16 Score=38.47 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCCccccccccc
Q 000142 1426 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1475 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~~r~h~~d~e~gEFLCPLCKs 1475 (2058)
...|||.-+..|+.++++ + +.+.||+||.
T Consensus 46 ~~~CgH~FC~~Ci~~~~~----~-----------------~~~~CP~Cr~ 74 (141)
T 3knv_A 46 QAQCGHRYCSFCLASILS----S-----------------GPQNCAACVH 74 (141)
T ss_dssp ECTTSCEEEHHHHHHHGG----G-----------------SCEECHHHHH
T ss_pred ECCCCCccCHHHHHHHHh----c-----------------CCCCCCCCCC
Confidence 568999999999999863 0 2267999997
No 82
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.28 E-value=9.1 Score=33.60 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=12.1
Q ss_pred ccccChHhhHHHHHH
Q 000142 1426 LSSCGHAVHQGCLDR 1440 (2058)
Q Consensus 1426 ~ssCGH~MH~~C~~~ 1440 (2058)
+..|||..+..|..+
T Consensus 21 ~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 21 LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSTTSCCSBTTTCSS
T ss_pred EcCCCCcccHHHHcc
Confidence 456999999999655
Done!