Query 000143
Match_columns 2058
No_of_seqs 575 out of 3207
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 20:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 1.8E-55 3.8E-60 530.6 42.1 562 1201-1768 3-566 (569)
2 KOG2171 Karyopherin (importin) 100.0 1.9E-45 4E-50 467.0 78.6 854 1057-2046 4-1020(1075)
3 KOG2171 Karyopherin (importin) 100.0 3.4E-34 7.4E-39 364.8 80.8 809 1110-2012 101-1022(1075)
4 PF12074 DUF3554: Domain of un 100.0 3.7E-39 8.1E-44 397.3 28.1 318 346-692 1-339 (339)
5 KOG1241 Karyopherin (importin) 100.0 3.9E-35 8.4E-40 354.4 55.2 662 1058-1770 2-767 (859)
6 KOG2023 Nuclear transport rece 100.0 5.8E-35 1.3E-39 345.8 45.5 719 1133-2037 16-824 (885)
7 KOG2023 Nuclear transport rece 100.0 8.3E-31 1.8E-35 310.8 47.2 683 1057-1768 13-819 (885)
8 KOG1824 TATA-binding protein-i 100.0 1.1E-25 2.4E-30 276.2 70.1 887 1057-2042 4-1007(1233)
9 KOG0213 Splicing factor 3b, su 100.0 9.4E-26 2E-30 269.2 56.9 708 1017-1801 357-1104(1172)
10 COG5215 KAP95 Karyopherin (imp 100.0 2.4E-25 5.2E-30 259.9 55.6 696 1057-1803 4-808 (858)
11 KOG1241 Karyopherin (importin) 100.0 1.1E-24 2.3E-29 264.6 57.8 732 1135-2030 6-855 (859)
12 KOG1824 TATA-binding protein-i 100.0 8.1E-22 1.8E-26 242.6 82.7 923 960-1994 127-1186(1233)
13 KOG0213 Splicing factor 3b, su 99.9 7.3E-22 1.6E-26 236.3 58.8 757 1215-2048 364-1159(1172)
14 COG5181 HSH155 U2 snRNP splice 99.9 1E-22 2.2E-27 239.4 45.7 679 1019-1770 164-874 (975)
15 KOG0915 Uncharacterized conser 99.9 1.5E-20 3.4E-25 242.6 54.0 616 1253-1954 817-1471(1702)
16 COG5181 HSH155 U2 snRNP splice 99.9 1.6E-19 3.4E-24 212.9 47.1 725 1225-2053 177-936 (975)
17 KOG0211 Protein phosphatase 2A 99.9 8E-20 1.7E-24 234.9 44.6 555 1351-1996 95-666 (759)
18 PLN03200 cellulose synthase-in 99.9 1.1E-17 2.5E-22 231.3 62.1 686 1301-2031 59-812 (2102)
19 PLN03200 cellulose synthase-in 99.9 1.7E-17 3.6E-22 229.7 63.3 721 1255-2033 59-863 (2102)
20 KOG1242 Protein containing ada 99.8 2.4E-18 5.1E-23 209.8 37.5 450 1509-2033 27-486 (569)
21 COG5215 KAP95 Karyopherin (imp 99.8 2.7E-15 5.8E-20 176.7 59.1 610 1139-1771 14-716 (858)
22 KOG0211 Protein phosphatase 2A 99.8 2.8E-16 6E-21 202.5 39.3 530 1252-1802 119-662 (759)
23 KOG0915 Uncharacterized conser 99.8 1.8E-13 4E-18 178.3 62.5 461 1575-2040 817-1361(1702)
24 KOG0212 Uncharacterized conser 99.6 9.5E-12 2.1E-16 148.3 42.6 424 1425-1917 5-447 (675)
25 KOG0212 Uncharacterized conser 99.5 1.9E-11 4.2E-16 145.7 35.9 421 1307-1770 7-448 (675)
26 PF01602 Adaptin_N: Adaptin N 99.5 2E-10 4.4E-15 152.8 49.4 470 1378-1912 42-522 (526)
27 KOG1248 Uncharacterized conser 99.5 3.5E-08 7.7E-13 128.6 65.9 728 1282-2042 73-910 (1176)
28 PF01602 Adaptin_N: Adaptin N 99.5 3.8E-11 8.3E-16 159.7 41.3 479 1451-1992 35-522 (526)
29 KOG1943 Beta-tubulin folding c 99.5 3.6E-09 7.8E-14 135.8 50.3 625 1352-2032 189-883 (1133)
30 PTZ00429 beta-adaptin; Provisi 99.4 6.7E-09 1.4E-13 137.1 52.7 490 1351-1909 45-541 (746)
31 KOG1943 Beta-tubulin folding c 99.4 2.4E-07 5.1E-12 119.6 63.7 491 1297-1805 338-882 (1133)
32 PRK09687 putative lyase; Provi 99.4 1.5E-11 3.3E-16 146.0 22.7 251 1380-1682 25-277 (280)
33 PRK13800 putative oxidoreducta 99.4 2.4E-11 5.3E-16 168.2 28.1 274 1421-1763 622-896 (897)
34 KOG0166 Karyopherin (importin) 99.4 1.1E-10 2.4E-15 143.1 29.7 377 1423-1803 69-485 (514)
35 KOG1991 Nuclear transport rece 99.4 9.6E-08 2.1E-12 122.3 56.4 648 1056-1758 3-792 (1010)
36 PRK13800 putative oxidoreducta 99.4 5.1E-11 1.1E-15 165.0 29.0 274 1301-1645 622-896 (897)
37 PTZ00429 beta-adaptin; Provisi 99.4 4.5E-08 9.7E-13 129.4 54.7 496 1224-1764 40-544 (746)
38 KOG1248 Uncharacterized conser 99.4 8.1E-06 1.8E-10 107.3 73.4 549 1420-2007 312-911 (1176)
39 PRK09687 putative lyase; Provi 99.4 4.3E-11 9.4E-16 142.1 22.8 253 1420-1721 23-278 (280)
40 KOG1991 Nuclear transport rece 99.3 1.3E-05 2.8E-10 103.4 64.7 378 1228-1653 101-578 (1010)
41 KOG0166 Karyopherin (importin) 99.2 1.6E-09 3.4E-14 133.2 27.6 334 1352-1688 80-437 (514)
42 KOG2274 Predicted importin 9 [ 99.2 1.4E-06 3.1E-11 110.4 51.3 636 1057-1723 4-778 (1005)
43 PF10508 Proteasom_PSMB: Prote 99.0 6.8E-07 1.5E-11 116.1 39.1 402 1425-1914 43-462 (503)
44 KOG1992 Nuclear export recepto 98.9 0.00044 9.5E-09 87.8 55.8 501 1409-1979 223-777 (960)
45 KOG1992 Nuclear export recepto 98.9 1.4E-05 3E-10 100.7 42.1 628 1057-1750 5-776 (960)
46 KOG1060 Vesicle coat complex A 98.9 5.5E-06 1.2E-10 103.5 37.9 401 1332-1763 66-530 (968)
47 KOG2274 Predicted importin 9 [ 98.9 0.0013 2.7E-08 84.7 58.2 341 1632-2010 423-792 (1005)
48 PF10508 Proteasom_PSMB: Prote 98.8 3.8E-06 8.3E-11 109.1 35.5 385 1342-1765 43-461 (503)
49 KOG1060 Vesicle coat complex A 98.8 1.6E-05 3.5E-10 99.5 37.3 491 1382-1986 39-563 (968)
50 KOG1240 Protein kinase contain 98.8 3.2E-07 6.9E-12 118.9 23.3 295 1379-1729 423-729 (1431)
51 KOG0392 SNF2 family DNA-depend 98.8 1.2E-05 2.7E-10 104.9 37.4 237 1057-1331 77-327 (1549)
52 PF12348 CLASP_N: CLASP N term 98.8 1.9E-07 4.1E-12 109.5 19.8 182 1347-1532 16-210 (228)
53 PF12348 CLASP_N: CLASP N term 98.8 2.1E-07 4.5E-12 109.2 19.6 200 1775-1999 7-211 (228)
54 KOG4224 Armadillo repeat prote 98.8 4.9E-07 1.1E-11 103.0 21.3 344 1382-1767 89-447 (550)
55 COG5064 SRP1 Karyopherin (impo 98.8 4.7E-07 1E-11 102.2 20.7 309 1336-1648 70-398 (526)
56 KOG1967 DNA repair/transcripti 98.8 0.0032 6.9E-08 81.3 58.7 156 1838-1993 861-1023(1030)
57 KOG1020 Sister chromatid cohes 98.7 0.0056 1.2E-07 82.9 64.4 151 1396-1554 794-948 (1692)
58 KOG4224 Armadillo repeat prote 98.7 1.2E-06 2.7E-11 99.8 20.4 342 1457-1803 84-445 (550)
59 KOG0414 Chromosome condensatio 98.7 0.0045 9.7E-08 82.2 54.8 775 955-1787 190-1083(1251)
60 COG5064 SRP1 Karyopherin (impo 98.7 4.4E-07 9.4E-12 102.5 16.4 306 1457-1766 113-443 (526)
61 KOG1240 Protein kinase contain 98.7 1.6E-06 3.5E-11 112.5 23.6 299 1710-2053 437-753 (1431)
62 KOG1967 DNA repair/transcripti 98.6 0.0086 1.9E-07 77.6 57.8 121 1918-2038 862-991 (1030)
63 KOG1059 Vesicle coat complex A 98.6 0.0014 3.1E-08 82.1 44.5 307 1419-1766 143-460 (877)
64 KOG1062 Vesicle coat complex A 98.6 0.00067 1.5E-08 86.2 42.2 304 1421-1771 108-419 (866)
65 PF12460 MMS19_C: RNAPII trans 98.6 0.00011 2.5E-09 93.7 36.6 208 1334-1544 186-413 (415)
66 KOG1059 Vesicle coat complex A 98.5 0.0012 2.5E-08 82.8 41.9 236 1252-1549 142-383 (877)
67 KOG2259 Uncharacterized conser 98.5 1.4E-05 3E-10 98.4 24.8 273 1738-2042 199-523 (823)
68 KOG1020 Sister chromatid cohes 98.5 0.019 4.2E-07 78.0 53.2 148 1334-1488 813-961 (1692)
69 KOG1061 Vesicle coat complex A 98.5 5.4E-05 1.2E-09 96.2 28.8 390 1380-1797 88-521 (734)
70 KOG1062 Vesicle coat complex A 98.5 0.0013 2.9E-08 83.7 40.3 291 1378-1692 103-419 (866)
71 PF12460 MMS19_C: RNAPII trans 98.4 0.00018 4E-09 91.8 33.4 310 1392-1745 56-414 (415)
72 KOG2062 26S proteasome regulat 98.4 0.0097 2.1E-07 75.1 45.6 294 1636-1991 396-691 (929)
73 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.1E-06 4.5E-11 84.2 11.4 93 1395-1526 2-94 (97)
74 KOG1061 Vesicle coat complex A 98.4 0.00034 7.3E-09 89.3 32.8 361 1420-1803 86-452 (734)
75 COG5240 SEC21 Vesicle coat com 98.3 0.0055 1.2E-07 74.7 39.4 461 1499-1993 65-554 (898)
76 TIGR02270 conserved hypothetic 98.3 5E-05 1.1E-09 94.8 23.8 242 1337-1647 54-295 (410)
77 KOG2062 26S proteasome regulat 98.3 0.00048 1E-08 86.2 30.2 276 1236-1551 399-679 (929)
78 COG5240 SEC21 Vesicle coat com 98.3 0.003 6.5E-08 76.9 35.8 459 1061-1554 69-543 (898)
79 KOG2021 Nuclear mRNA export fa 98.3 0.042 9.2E-07 69.7 53.0 442 1276-1748 209-749 (980)
80 PF12755 Vac14_Fab1_bd: Vacuol 98.2 5.3E-06 1.1E-10 81.4 10.0 87 1474-1560 2-91 (97)
81 TIGR02270 conserved hypothetic 98.2 7.7E-05 1.7E-09 93.1 22.6 240 1378-1685 54-294 (410)
82 COG5656 SXM1 Importin, protein 98.2 0.05 1.1E-06 69.0 51.6 341 1357-1702 389-772 (970)
83 COG1413 FOG: HEAT repeat [Ener 98.2 0.00024 5.2E-09 88.7 26.6 274 1420-1761 43-330 (335)
84 COG1413 FOG: HEAT repeat [Ener 98.2 0.00027 5.8E-09 88.2 26.8 274 1378-1720 43-330 (335)
85 KOG0414 Chromosome condensatio 98.1 0.11 2.3E-06 69.9 54.5 160 1692-1889 915-1079(1251)
86 KOG2956 CLIP-associating prote 98.1 0.00015 3.2E-09 87.0 20.1 194 1335-1532 284-481 (516)
87 KOG2259 Uncharacterized conser 98.1 0.0018 3.9E-08 80.4 29.6 285 1463-1767 203-512 (823)
88 KOG1820 Microtubule-associated 98.1 9.1E-05 2E-09 98.1 20.2 340 1620-2008 99-457 (815)
89 KOG4535 HEAT and armadillo rep 98.1 0.00085 1.8E-08 79.9 25.2 496 1392-1917 9-606 (728)
90 KOG1993 Nuclear transport rece 98.1 0.11 2.3E-06 66.7 67.0 138 1059-1208 2-154 (978)
91 KOG0392 SNF2 family DNA-depend 98.0 0.075 1.6E-06 71.2 43.9 230 1297-1530 74-327 (1549)
92 PF05804 KAP: Kinesin-associat 98.0 0.031 6.6E-07 74.2 41.4 359 1477-1914 268-649 (708)
93 COG5096 Vesicle coat complex, 98.0 0.12 2.6E-06 68.3 45.4 145 1454-1649 51-196 (757)
94 KOG1820 Microtubule-associated 98.0 0.00021 4.6E-09 94.7 19.9 196 1341-1539 256-454 (815)
95 KOG0891 DNA-dependent protein 98.0 0.45 9.8E-06 70.5 60.1 503 1335-1887 478-1055(2341)
96 KOG0413 Uncharacterized conser 97.9 0.12 2.5E-06 67.1 41.2 136 1898-2039 944-1082(1529)
97 PF13513 HEAT_EZ: HEAT-like re 97.9 1.5E-05 3.2E-10 70.2 5.4 55 1472-1526 1-55 (55)
98 KOG4535 HEAT and armadillo rep 97.9 0.027 5.9E-07 67.7 31.9 456 1274-1763 10-600 (728)
99 COG5096 Vesicle coat complex, 97.8 0.062 1.3E-06 70.8 37.8 143 1332-1486 50-194 (757)
100 KOG2032 Uncharacterized conser 97.8 0.019 4.1E-07 70.1 29.0 264 1695-1994 257-531 (533)
101 PF05804 KAP: Kinesin-associat 97.7 0.036 7.7E-07 73.6 33.9 355 1398-1766 268-649 (708)
102 KOG1058 Vesicle coat complex C 97.7 0.035 7.7E-07 70.4 31.5 165 1223-1401 27-194 (948)
103 KOG1078 Vesicle coat complex C 97.7 0.14 3.1E-06 65.8 37.0 458 1383-1913 69-531 (865)
104 KOG1077 Vesicle coat complex A 97.7 0.29 6.2E-06 62.1 38.2 350 1348-1743 84-451 (938)
105 KOG1058 Vesicle coat complex C 97.7 0.043 9.3E-07 69.7 31.3 416 1199-1690 39-466 (948)
106 KOG2032 Uncharacterized conser 97.7 0.014 3E-07 71.1 26.2 232 1296-1528 254-531 (533)
107 KOG0891 DNA-dependent protein 97.6 1.2 2.6E-05 66.3 48.4 532 1463-2033 139-722 (2341)
108 PF12717 Cnd1: non-SMC mitotic 97.6 0.00083 1.8E-08 75.1 13.9 112 1898-2014 1-112 (178)
109 KOG0168 Putative ubiquitin fus 97.6 0.024 5.2E-07 72.8 27.6 196 1337-1532 167-368 (1051)
110 KOG2956 CLIP-associating prote 97.6 0.0023 4.9E-08 77.2 17.8 155 1839-1998 324-481 (516)
111 PF05004 IFRD: Interferon-rela 97.5 0.0081 1.8E-07 72.9 21.2 191 1460-1651 45-260 (309)
112 cd00020 ARM Armadillo/beta-cat 97.4 0.00091 2E-08 69.4 11.2 108 1421-1528 8-120 (120)
113 KOG0168 Putative ubiquitin fus 97.4 0.13 2.9E-06 66.3 31.5 154 1617-1770 209-368 (1051)
114 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00012 2.7E-09 64.3 3.9 55 1393-1447 1-55 (55)
115 KOG1078 Vesicle coat complex C 97.4 0.98 2.1E-05 58.6 38.2 94 1419-1520 63-156 (865)
116 PF13646 HEAT_2: HEAT repeats; 97.4 0.0011 2.4E-08 64.7 10.1 86 1422-1524 1-88 (88)
117 KOG1293 Proteins containing ar 97.3 0.7 1.5E-05 58.9 35.4 420 1398-1878 72-538 (678)
118 PF13646 HEAT_2: HEAT repeats; 97.3 0.00088 1.9E-08 65.4 8.4 87 1578-1683 1-88 (88)
119 KOG0413 Uncharacterized conser 97.3 1.3 2.9E-05 58.0 37.3 144 1858-2009 945-1089(1529)
120 PF12717 Cnd1: non-SMC mitotic 97.2 0.013 2.9E-07 65.5 17.8 99 1858-1960 2-100 (178)
121 KOG0567 HEAT repeat-containing 97.2 0.017 3.7E-07 65.3 17.4 216 1422-1683 38-276 (289)
122 cd00020 ARM Armadillo/beta-cat 97.1 0.0016 3.6E-08 67.4 9.1 108 1378-1486 7-119 (120)
123 KOG4653 Uncharacterized conser 97.1 0.063 1.4E-06 69.5 23.7 142 1621-1767 729-877 (982)
124 KOG1993 Nuclear transport rece 97.1 1.8 4E-05 56.2 38.3 285 1223-1509 404-709 (978)
125 KOG2025 Chromosome condensatio 97.1 1.7 3.8E-05 55.7 44.6 212 1416-1652 81-299 (892)
126 KOG4413 26S proteasome regulat 97.1 0.82 1.8E-05 53.0 29.5 96 1433-1528 53-157 (524)
127 KOG4653 Uncharacterized conser 97.0 0.038 8.3E-07 71.4 21.1 219 1698-1953 729-965 (982)
128 PF05004 IFRD: Interferon-rela 97.0 0.028 6.2E-07 68.3 19.5 186 1584-1769 51-260 (309)
129 KOG2025 Chromosome condensatio 97.0 0.19 4.1E-06 63.9 25.9 210 1573-1802 82-292 (892)
130 KOG4413 26S proteasome regulat 97.0 0.15 3.3E-06 58.7 22.9 251 1716-1996 63-335 (524)
131 KOG1525 Sister chromatid cohes 97.0 3.9 8.5E-05 57.9 47.5 360 1138-1516 58-441 (1266)
132 KOG0567 HEAT repeat-containing 97.0 0.041 8.8E-07 62.3 18.1 224 1464-1730 42-285 (289)
133 PF04826 Arm_2: Armadillo-like 97.0 0.057 1.2E-06 63.4 20.4 190 1459-1653 13-210 (254)
134 PF08506 Cse1: Cse1; InterPro 96.9 0.03 6.5E-07 69.6 18.9 231 1232-1481 112-369 (370)
135 COG5116 RPN2 26S proteasome re 96.9 0.033 7.2E-07 68.1 18.2 283 1196-1513 392-676 (926)
136 COG5116 RPN2 26S proteasome re 96.9 0.036 7.8E-07 67.8 17.7 268 1246-1550 403-675 (926)
137 KOG2933 Uncharacterized conser 96.8 0.023 5E-07 65.7 14.6 180 1458-1642 88-271 (334)
138 KOG1525 Sister chromatid cohes 96.8 5.4 0.00012 56.5 50.9 320 1275-1605 65-405 (1266)
139 KOG0946 ER-Golgi vesicle-tethe 96.8 3.4 7.3E-05 53.9 42.3 185 1335-1548 20-219 (970)
140 COG5218 YCG1 Chromosome conden 96.6 3.4 7.3E-05 51.9 43.7 213 1413-1645 42-263 (885)
141 KOG1077 Vesicle coat complex A 96.6 4.1 8.9E-05 52.4 41.7 319 1417-1771 108-438 (938)
142 KOG4524 Uncharacterized conser 96.5 5.6 0.00012 53.4 39.3 83 1852-1934 811-900 (1014)
143 PF04826 Arm_2: Armadillo-like 96.5 0.08 1.7E-06 62.2 17.2 192 1337-1533 12-210 (254)
144 KOG2022 Nuclear transport rece 96.4 5.7 0.00012 52.6 64.4 188 1435-1629 439-642 (982)
145 KOG1243 Protein kinase [Genera 96.4 0.045 9.8E-07 70.0 14.7 189 1573-1768 327-517 (690)
146 KOG1243 Protein kinase [Genera 96.3 0.047 1E-06 69.9 14.6 221 1299-1530 292-517 (690)
147 COG5098 Chromosome condensatio 96.2 5.8 0.00013 50.7 42.7 114 1896-2016 907-1021(1128)
148 PF02985 HEAT: HEAT repeat; I 96.2 0.0071 1.5E-07 46.0 4.3 30 1500-1529 1-30 (31)
149 KOG1949 Uncharacterized conser 96.2 0.11 2.3E-06 65.6 16.2 150 1575-1725 173-331 (1005)
150 PF12719 Cnd3: Nuclear condens 96.2 0.088 1.9E-06 64.3 15.9 103 1892-1995 34-144 (298)
151 PF14500 MMS19_N: Dos2-interac 96.1 0.61 1.3E-05 55.3 21.9 225 1275-1505 14-256 (262)
152 COG5656 SXM1 Importin, protein 96.1 7.2 0.00016 50.6 60.8 179 1355-1533 259-494 (970)
153 PF01347 Vitellogenin_N: Lipop 96.1 0.26 5.6E-06 67.2 21.4 194 1379-1595 396-612 (618)
154 PF02985 HEAT: HEAT repeat; I 96.1 0.0096 2.1E-07 45.3 4.2 30 1966-1995 1-30 (31)
155 PLN03076 ARF guanine nucleotid 96.0 17 0.00036 54.1 44.4 270 1275-1546 1152-1511(1780)
156 PF05918 API5: Apoptosis inhib 96.0 1 2.2E-05 58.1 24.3 125 1589-1722 35-159 (556)
157 PF12231 Rif1_N: Rap1-interact 96.0 4.6 9.9E-05 50.9 30.0 236 1392-1653 59-308 (372)
158 PF12054 DUF3535: Domain of un 96.0 0.4 8.6E-06 61.4 20.7 242 1434-1706 101-364 (441)
159 COG5218 YCG1 Chromosome conden 95.9 1.5 3.3E-05 54.7 24.1 215 1773-2036 89-303 (885)
160 PF08506 Cse1: Cse1; InterPro 95.9 0.42 9.1E-06 59.6 20.0 128 1857-1989 224-370 (370)
161 PF13001 Ecm29: Proteasome sta 95.9 1.9 4E-05 56.7 26.9 150 1843-1992 318-486 (501)
162 PF10274 ParcG: Parkin co-regu 95.8 0.1 2.2E-06 57.2 12.4 89 1921-2009 36-130 (183)
163 PF14500 MMS19_N: Dos2-interac 95.8 2.5 5.3E-05 50.3 25.0 241 1624-1892 4-257 (262)
164 PF12719 Cnd3: Nuclear condens 95.8 1.3 2.9E-05 54.1 23.7 144 1418-1562 24-181 (298)
165 PF05918 API5: Apoptosis inhib 95.8 3.7 8.1E-05 53.2 27.8 134 1662-1803 28-161 (556)
166 PF11865 DUF3385: Domain of un 95.7 0.096 2.1E-06 57.2 11.7 141 1617-1766 8-157 (160)
167 PF10274 ParcG: Parkin co-regu 95.4 0.16 3.4E-06 55.7 12.1 117 1654-1771 35-169 (183)
168 KOG1822 Uncharacterized conser 95.4 23 0.00051 51.1 42.6 224 1304-1529 880-1128(2067)
169 PF13001 Ecm29: Proteasome sta 95.4 2.7 5.8E-05 55.2 25.7 199 1829-2032 220-445 (501)
170 KOG2933 Uncharacterized conser 95.2 0.34 7.4E-06 56.4 14.5 134 1392-1531 101-237 (334)
171 PF13251 DUF4042: Domain of un 95.1 0.2 4.4E-06 55.4 11.7 124 1505-1649 46-175 (182)
172 PF08167 RIX1: rRNA processing 95.0 0.36 7.7E-06 53.2 13.5 119 1921-2039 23-152 (165)
173 PF03378 CAS_CSE1: CAS/CSE pro 94.9 1.8 3.9E-05 55.3 21.4 298 1610-1976 17-350 (435)
174 KOG2081 Nuclear transport regu 94.9 16 0.00035 46.5 36.8 272 1252-1535 151-465 (559)
175 PLN03076 ARF guanine nucleotid 94.8 10 0.00023 56.1 30.6 313 1420-1746 1137-1511(1780)
176 KOG1517 Guanine nucleotide bin 94.7 0.66 1.4E-05 61.6 16.5 216 1753-1993 486-731 (1387)
177 KOG0946 ER-Golgi vesicle-tethe 94.7 21 0.00046 47.0 37.8 199 1500-1726 23-242 (970)
178 PF12231 Rif1_N: Rap1-interact 94.6 18 0.00038 45.8 30.7 270 1512-1805 59-353 (372)
179 COG5095 TAF6 Transcription ini 94.6 0.69 1.5E-05 53.0 14.4 148 1333-1488 193-360 (450)
180 PF13251 DUF4042: Domain of un 94.6 0.42 9.1E-06 53.0 12.7 136 1394-1529 1-175 (182)
181 PF11865 DUF3385: Domain of un 94.5 0.32 6.8E-06 53.2 11.6 146 1497-1649 8-158 (160)
182 cd00256 VATPase_H VATPase_H, r 94.5 5.4 0.00012 50.4 23.4 297 1624-1952 106-425 (429)
183 KOG1851 Uncharacterized conser 94.3 26 0.00056 49.8 30.6 152 1378-1531 1526-1681(1710)
184 cd08050 TAF6 TATA Binding Prot 94.3 0.58 1.3E-05 58.0 14.5 151 1491-1685 174-338 (343)
185 smart00638 LPD_N Lipoprotein N 94.2 4.2 9E-05 54.9 23.9 195 1378-1595 357-568 (574)
186 KOG2549 Transcription initiati 93.9 0.54 1.2E-05 58.8 12.8 150 1492-1686 204-369 (576)
187 PF03378 CAS_CSE1: CAS/CSE pro 93.6 19 0.00041 46.2 26.4 188 1611-1802 59-270 (435)
188 KOG2137 Protein kinase [Signal 93.6 1.8 3.8E-05 56.4 17.0 182 1360-1549 295-481 (700)
189 smart00638 LPD_N Lipoprotein N 93.6 15 0.00032 49.6 27.4 171 1336-1525 356-542 (574)
190 PF08623 TIP120: TATA-binding 93.4 0.68 1.5E-05 50.4 11.2 95 1414-1509 3-116 (169)
191 KOG2137 Protein kinase [Signal 93.0 3.1 6.6E-05 54.3 17.8 130 1616-1747 386-518 (700)
192 KOG0889 Histone acetyltransfer 92.9 96 0.0021 48.3 51.5 285 1619-1914 984-1306(3550)
193 KOG1517 Guanine nucleotide bin 92.8 1.4 3E-05 58.8 14.4 148 1849-1996 517-673 (1387)
194 PF11864 DUF3384: Domain of un 92.4 45 0.00098 43.5 33.9 288 1352-1652 4-335 (464)
195 KOG1949 Uncharacterized conser 92.3 7.4 0.00016 50.1 19.2 142 1848-1992 178-329 (1005)
196 PF04118 Dopey_N: Dopey, N-ter 92.3 26 0.00056 42.6 23.6 193 1658-1870 55-251 (307)
197 PF08064 UME: UME (NUC010) dom 91.9 1.4 3E-05 44.6 10.6 85 1378-1464 11-98 (107)
198 KOG1851 Uncharacterized conser 91.8 83 0.0018 45.2 34.1 144 1619-1764 1526-1676(1710)
199 PF01347 Vitellogenin_N: Lipop 91.8 6 0.00013 54.0 20.2 153 1589-1761 448-617 (618)
200 KOG1822 Uncharacterized conser 91.7 94 0.002 45.5 58.4 126 1887-2012 878-1009(2067)
201 COG5095 TAF6 Transcription ini 91.4 3.3 7.2E-05 47.7 13.7 79 1870-1948 262-355 (450)
202 PF08064 UME: UME (NUC010) dom 91.4 2.3 5E-05 43.1 11.5 77 1896-1974 26-105 (107)
203 PF05536 Neurochondrin: Neuroc 91.2 65 0.0014 42.8 28.3 179 1473-1653 72-266 (543)
204 PF10521 DUF2454: Protein of u 91.2 2.8 6.2E-05 50.6 14.2 142 1609-1750 109-278 (282)
205 KOG2160 Armadillo/beta-catenin 91.1 8 0.00017 46.8 17.2 174 1858-2032 97-284 (342)
206 KOG2160 Armadillo/beta-catenin 90.9 4.1 8.8E-05 49.2 14.6 137 1391-1528 95-240 (342)
207 KOG1293 Proteins containing ar 90.8 64 0.0014 42.1 36.7 110 1843-1952 418-533 (678)
208 PF08167 RIX1: rRNA processing 90.8 2.7 5.8E-05 46.4 12.3 129 1616-1746 22-164 (165)
209 PF10363 DUF2435: Protein of u 90.6 1.6 3.6E-05 42.7 9.2 85 1460-1549 5-89 (92)
210 PF04118 Dopey_N: Dopey, N-ter 90.6 24 0.00053 42.8 21.0 178 1420-1602 54-251 (307)
211 smart00802 UME Domain in UVSB 90.1 2.6 5.5E-05 42.5 10.3 84 1378-1463 11-97 (107)
212 KOG2122 Beta-catenin-binding p 90.0 24 0.00052 49.5 21.5 74 1923-1996 530-603 (2195)
213 KOG2022 Nuclear transport rece 89.7 91 0.002 42.1 64.2 366 1617-1998 460-871 (982)
214 PF10521 DUF2454: Protein of u 89.6 3.7 8E-05 49.7 13.3 139 1412-1550 111-278 (282)
215 PF12530 DUF3730: Protein of u 89.5 30 0.00065 40.6 20.3 78 1753-1847 100-178 (234)
216 COG5098 Chromosome condensatio 89.4 81 0.0018 41.1 51.7 103 1502-1604 302-414 (1128)
217 PF10363 DUF2435: Protein of u 89.2 2.1 4.5E-05 42.0 8.7 83 1697-1784 4-86 (92)
218 PF08623 TIP120: TATA-binding 88.9 1.8 3.9E-05 47.2 8.8 77 1897-1975 39-116 (169)
219 KOG2549 Transcription initiati 88.6 15 0.00033 46.6 17.4 145 1335-1488 205-371 (576)
220 PF05536 Neurochondrin: Neuroc 88.5 1E+02 0.0022 41.1 28.9 151 1575-1730 97-266 (543)
221 cd08050 TAF6 TATA Binding Prot 88.1 2.4 5.2E-05 52.6 10.5 128 1414-1551 176-323 (343)
222 PF08389 Xpo1: Exportin 1-like 87.9 4.7 0.0001 43.3 11.6 124 1901-2025 4-148 (148)
223 PF08161 NUC173: NUC173 domain 87.8 8.4 0.00018 43.7 13.6 161 1865-2029 21-198 (198)
224 KOG4524 Uncharacterized conser 87.8 1.3E+02 0.0027 41.4 43.8 90 1924-2013 804-899 (1014)
225 KOG0889 Histone acetyltransfer 87.6 2.4E+02 0.0053 44.4 40.8 158 1577-1735 985-1165(3550)
226 KOG2005 26S proteasome regulat 87.3 1.1E+02 0.0023 40.0 28.3 72 1915-1993 631-703 (878)
227 cd00256 VATPase_H VATPase_H, r 87.1 1E+02 0.0022 39.5 26.3 286 1428-1723 109-423 (429)
228 smart00802 UME Domain in UVSB 86.7 9.5 0.00021 38.5 11.8 93 1880-1974 6-105 (107)
229 PF12530 DUF3730: Protein of u 85.4 52 0.0011 38.6 19.1 205 1422-1632 2-216 (234)
230 KOG1048 Neural adherens juncti 85.0 1.6E+02 0.0034 39.7 25.9 149 1378-1527 518-683 (717)
231 PF08569 Mo25: Mo25-like; Int 84.0 1.2E+02 0.0026 37.6 22.6 148 1378-1528 76-238 (335)
232 KOG2213 Apoptosis inhibitor 5/ 83.6 50 0.0011 40.4 17.3 55 1471-1529 37-91 (460)
233 KOG2122 Beta-catenin-binding p 82.5 1.6E+02 0.0034 42.2 23.1 55 1673-1729 366-427 (2195)
234 PF08161 NUC173: NUC173 domain 82.5 32 0.0007 39.1 15.1 166 1477-1646 19-197 (198)
235 KOG2973 Uncharacterized conser 82.3 89 0.0019 37.3 18.3 101 1503-1605 7-111 (353)
236 KOG2021 Nuclear mRNA export fa 81.9 1.9E+02 0.0042 38.5 66.9 91 1880-1973 694-784 (980)
237 COG5234 CIN1 Beta-tubulin fold 81.0 2E+02 0.0043 38.0 26.2 243 1275-1528 211-491 (993)
238 PF08389 Xpo1: Exportin 1-like 81.0 19 0.00041 38.6 12.5 123 1353-1481 3-147 (148)
239 PF12054 DUF3535: Domain of un 80.7 1.4E+02 0.0029 38.8 21.6 233 1191-1429 101-363 (441)
240 KOG2081 Nuclear transport regu 80.1 1.9E+02 0.0042 37.4 40.3 182 1842-2030 289-495 (559)
241 KOG1048 Neural adherens juncti 79.9 2.3E+02 0.0051 38.2 23.7 109 1887-1996 568-686 (717)
242 COG5234 CIN1 Beta-tubulin fold 79.7 2.2E+02 0.0047 37.7 24.6 117 1216-1347 387-508 (993)
243 PF03224 V-ATPase_H_N: V-ATPas 79.7 81 0.0017 38.9 18.8 151 1845-1997 106-272 (312)
244 PF14664 RICTOR_N: Rapamycin-i 79.6 1.6E+02 0.0034 37.2 21.2 116 1428-1549 34-159 (371)
245 PF00514 Arm: Armadillo/beta-c 79.2 3.3 7E-05 33.8 4.3 29 1499-1527 12-40 (41)
246 COG5657 CSE1 CAS/CSE protein i 79.0 2.6E+02 0.0057 38.3 37.8 108 1062-1177 9-133 (947)
247 PF12074 DUF3554: Domain of un 78.8 27 0.00058 43.6 14.4 86 1895-1980 33-122 (339)
248 KOG2149 Uncharacterized conser 78.8 46 0.001 41.1 15.4 117 1392-1508 71-191 (393)
249 KOG2149 Uncharacterized conser 78.6 19 0.00042 44.2 12.1 119 1894-2012 67-191 (393)
250 PF07539 DRIM: Down-regulated 78.4 17 0.00036 38.9 10.4 81 1499-1585 17-97 (141)
251 PF14225 MOR2-PAG1_C: Cell mor 78.3 1.6E+02 0.0034 35.2 20.7 167 1575-1749 63-240 (262)
252 PF14868 DUF4487: Domain of un 76.1 2.7E+02 0.0059 36.9 23.6 86 1565-1650 468-554 (559)
253 PF11698 V-ATPase_H_C: V-ATPas 76.1 9.1 0.0002 39.2 7.2 69 1924-1994 44-115 (119)
254 PF01603 B56: Protein phosphat 75.0 2.5E+02 0.0055 36.0 24.2 115 1844-1959 255-376 (409)
255 KOG2213 Apoptosis inhibitor 5/ 74.8 2.2E+02 0.0048 35.2 21.2 47 1736-1785 60-106 (460)
256 PF14664 RICTOR_N: Rapamycin-i 74.6 2.4E+02 0.0052 35.6 22.9 179 1856-2035 80-274 (371)
257 KOG3961 Uncharacterized conser 74.1 8 0.00017 42.9 6.6 86 1922-2008 113-204 (262)
258 KOG1848 Uncharacterized conser 73.7 1.4E+02 0.003 42.6 19.0 218 1310-1528 852-1132(1610)
259 KOG0803 Predicted E3 ubiquitin 73.6 1.5E+02 0.0032 43.1 20.2 109 1420-1528 41-153 (1312)
260 PF08767 CRM1_C: CRM1 C termin 73.4 1.5E+02 0.0033 36.6 18.5 156 1395-1550 43-227 (319)
261 KOG0803 Predicted E3 ubiquitin 73.2 1.2E+02 0.0026 44.0 19.2 192 1337-1532 41-267 (1312)
262 cd03572 ENTH_epsin_related ENT 72.0 37 0.0008 35.2 10.5 74 1692-1765 34-118 (122)
263 PF01603 B56: Protein phosphat 71.3 3E+02 0.0066 35.3 23.4 109 1923-2032 255-372 (409)
264 PF12830 Nipped-B_C: Sister ch 70.9 1.2E+02 0.0026 34.2 15.6 78 1844-1925 8-85 (187)
265 PF11864 DUF3384: Domain of un 70.7 3.4E+02 0.0073 35.5 36.5 281 1191-1486 4-329 (464)
266 KOG3961 Uncharacterized conser 70.2 10 0.00022 42.0 6.3 86 1457-1542 113-204 (262)
267 PF03224 V-ATPase_H_N: V-ATPas 69.6 1.2E+02 0.0027 37.2 16.8 172 1589-1765 70-268 (312)
268 PF08767 CRM1_C: CRM1 C termin 69.2 1.1E+02 0.0023 37.9 15.9 121 1392-1512 84-227 (319)
269 PF08713 DNA_alkylation: DNA a 67.6 56 0.0012 37.6 12.6 142 1341-1499 54-196 (213)
270 PF07571 DUF1546: Protein of u 66.5 21 0.00046 35.0 7.3 62 1141-1206 17-78 (92)
271 PF12765 Cohesin_HEAT: HEAT re 65.0 9.4 0.0002 31.4 3.7 41 1481-1523 2-42 (42)
272 PF12830 Nipped-B_C: Sister ch 63.2 1.6E+02 0.0034 33.3 14.6 128 1886-2014 9-141 (187)
273 PF00514 Arm: Armadillo/beta-c 61.9 14 0.0003 30.0 4.3 30 1964-1993 11-40 (41)
274 KOG2759 Vacuolar H+-ATPase V1 60.4 4.4E+02 0.0095 33.2 22.3 64 1889-1952 370-438 (442)
275 PF12726 SEN1_N: SEN1 N termin 60.3 6.5E+02 0.014 35.1 38.3 118 1575-1694 119-250 (727)
276 cd03568 VHS_STAM VHS domain fa 60.1 99 0.0021 33.3 11.5 74 1378-1452 37-113 (144)
277 cd03572 ENTH_epsin_related ENT 59.9 96 0.0021 32.2 10.8 73 1455-1527 35-118 (122)
278 PF14868 DUF4487: Domain of un 59.8 5.5E+02 0.012 34.2 26.5 90 1907-1996 463-554 (559)
279 KOG1848 Uncharacterized conser 59.1 7.9E+02 0.017 35.7 21.7 106 1848-1953 1001-1133(1610)
280 PF11698 V-ATPase_H_C: V-ATPas 58.9 36 0.00079 35.0 7.5 57 1471-1528 57-115 (119)
281 PF07571 DUF1546: Protein of u 57.8 29 0.00063 34.1 6.5 55 1896-1950 17-76 (92)
282 KOG1222 Kinesin associated pro 57.2 5E+02 0.011 32.9 30.4 93 1420-1512 304-399 (791)
283 KOG1837 Uncharacterized conser 57.0 5.6E+02 0.012 37.6 20.2 58 1392-1449 1554-1611(1621)
284 KOG2973 Uncharacterized conser 56.8 4.3E+02 0.0092 31.9 19.4 102 1699-1802 6-109 (353)
285 cd03568 VHS_STAM VHS domain fa 56.8 1.3E+02 0.0029 32.3 11.8 77 1694-1770 35-114 (144)
286 PF14676 FANCI_S2: FANCI solen 56.6 2E+02 0.0044 31.5 13.2 117 1864-1989 38-156 (158)
287 PF08569 Mo25: Mo25-like; Int 56.2 4.9E+02 0.011 32.4 24.6 183 1338-1529 77-284 (335)
288 cd03567 VHS_GGA VHS domain fam 54.7 1.8E+02 0.004 31.0 12.3 74 1458-1531 38-119 (139)
289 cd00197 VHS_ENTH_ANTH VHS, ENT 54.5 76 0.0016 32.6 9.4 69 1378-1447 37-113 (115)
290 PF11701 UNC45-central: Myosin 54.0 31 0.00066 37.7 6.6 118 1896-2014 16-139 (157)
291 PF04388 Hamartin: Hamartin pr 53.6 3.6E+02 0.0078 37.0 17.9 92 1248-1347 64-158 (668)
292 KOG2005 26S proteasome regulat 53.6 3.2E+02 0.0068 36.1 15.7 269 1348-1648 425-704 (878)
293 KOG2011 Sister chromatid cohes 53.0 7.4E+02 0.016 35.2 20.2 128 1414-1541 280-414 (1048)
294 KOG1877 Putative transmembrane 52.7 2.8E+02 0.006 38.0 15.9 71 1476-1546 74-149 (819)
295 cd03567 VHS_GGA VHS domain fam 52.2 1.7E+02 0.0036 31.3 11.5 74 1378-1452 38-119 (139)
296 cd03561 VHS VHS domain family; 52.1 1.5E+02 0.0032 31.4 11.3 77 1456-1532 35-116 (133)
297 cd03561 VHS VHS domain family; 51.9 1.6E+02 0.0035 31.2 11.5 75 1378-1453 37-116 (133)
298 PF11919 DUF3437: Domain of un 51.1 21 0.00045 34.9 4.1 58 1473-1531 4-61 (90)
299 PF12333 Ipi1_N: Rix1 complex 50.8 99 0.0022 31.1 9.1 58 282-339 5-65 (102)
300 PF14631 FancD2: Fanconi anaem 49.6 1.2E+03 0.026 35.0 29.0 166 1481-1651 417-586 (1426)
301 smart00185 ARM Armadillo/beta- 49.3 21 0.00045 28.5 3.4 29 1499-1527 12-40 (41)
302 cd00197 VHS_ENTH_ANTH VHS, ENT 48.1 1.8E+02 0.0039 29.8 10.9 72 1455-1526 34-113 (115)
303 cd03569 VHS_Hrs_Vps27p VHS dom 47.8 2.5E+02 0.0055 30.1 12.2 75 1378-1453 41-118 (142)
304 PF14225 MOR2-PAG1_C: Cell mor 47.8 5.6E+02 0.012 30.6 21.8 145 1881-2034 107-258 (262)
305 PF00790 VHS: VHS domain; Int 47.6 1.9E+02 0.0042 30.8 11.4 88 1681-1769 28-121 (140)
306 PF04510 DUF577: Family of unk 47.3 1.6E+02 0.0035 32.3 10.4 74 1955-2028 74-159 (174)
307 KOG2011 Sister chromatid cohes 47.2 1.1E+03 0.023 33.7 21.8 71 1457-1529 281-356 (1048)
308 KOG1837 Uncharacterized conser 46.9 1.2E+03 0.027 34.4 34.1 62 1883-1944 1539-1603(1621)
309 PF03542 Tuberin: Tuberin; In 46.8 5.7E+02 0.012 32.0 16.6 145 1378-1527 141-302 (356)
310 KOG4199 Uncharacterized conser 45.8 6.4E+02 0.014 30.7 24.6 297 1225-1529 116-445 (461)
311 PF00790 VHS: VHS domain; Int 45.2 2.6E+02 0.0056 29.9 11.9 88 1909-1997 29-121 (140)
312 smart00288 VHS Domain present 42.9 2.2E+02 0.0047 30.2 10.7 74 1378-1452 37-114 (133)
313 PF08713 DNA_alkylation: DNA a 42.8 1.7E+02 0.0036 33.7 10.9 129 1307-1452 58-187 (213)
314 cd03565 VHS_Tom1 VHS domain fa 42.4 3E+02 0.0065 29.5 11.7 75 1378-1452 38-118 (141)
315 cd07064 AlkD_like_1 A new stru 42.2 5.9E+02 0.013 29.3 15.5 142 1339-1497 47-189 (208)
316 PF12765 Cohesin_HEAT: HEAT re 42.1 28 0.00061 28.7 3.0 25 1964-1988 17-41 (42)
317 PF06685 DUF1186: Protein of u 41.0 6.8E+02 0.015 29.7 16.7 129 1895-2039 52-189 (249)
318 PF09324 DUF1981: Domain of un 39.7 1E+02 0.0022 30.0 6.9 69 1378-1446 17-85 (86)
319 PF06685 DUF1186: Protein of u 39.3 7.2E+02 0.016 29.5 15.4 68 1657-1728 73-145 (249)
320 cd03569 VHS_Hrs_Vps27p VHS dom 37.9 5.4E+02 0.012 27.6 13.1 77 1921-1997 39-117 (142)
321 KOG2199 Signal transducing ada 37.7 1.8E+02 0.004 35.7 9.9 73 1460-1532 47-122 (462)
322 PF14911 MMS22L_C: S-phase gen 37.1 9.5E+02 0.021 30.2 17.6 37 1654-1691 66-102 (373)
323 smart00288 VHS Domain present 36.7 3.4E+02 0.0073 28.8 11.0 77 1694-1770 35-115 (133)
324 PF12333 Ipi1_N: Rix1 complex 36.7 1.2E+02 0.0025 30.6 7.1 59 1956-2014 2-64 (102)
325 PF11701 UNC45-central: Myosin 36.2 1E+02 0.0022 33.7 7.3 127 1858-1990 19-155 (157)
326 PF09324 DUF1981: Domain of un 35.7 1.4E+02 0.0031 28.9 7.3 67 1696-1762 17-84 (86)
327 PF12397 U3snoRNP10: U3 small 35.1 2E+02 0.0043 29.8 8.9 87 1961-2047 2-93 (121)
328 smart00567 EZ_HEAT E-Z type HE 32.8 44 0.00095 25.0 2.6 28 1514-1548 2-29 (30)
329 PF11935 DUF3453: Domain of un 32.7 8.8E+02 0.019 28.5 15.6 73 1507-1606 1-73 (239)
330 smart00567 EZ_HEAT E-Z type HE 32.4 54 0.0012 24.5 3.0 29 1472-1510 1-29 (30)
331 PF11935 DUF3453: Domain of un 32.4 8.9E+02 0.019 28.5 15.8 60 1429-1488 2-73 (239)
332 PF03130 HEAT_PBS: PBS lyase H 32.0 21 0.00044 26.3 0.7 25 1515-1546 1-25 (27)
333 PF04078 Rcd1: Cell differenti 32.0 8.6E+02 0.019 28.9 13.9 95 1433-1528 109-218 (262)
334 KOG3915 Transcription regulato 30.5 13 0.00029 45.2 -0.8 18 842-859 561-578 (641)
335 PF04869 Uso1_p115_head: Uso1 30.0 5.1E+02 0.011 31.8 12.4 67 1463-1529 160-232 (312)
336 PF11919 DUF3437: Domain of un 30.0 78 0.0017 31.0 4.4 55 1394-1449 4-58 (90)
337 PF12612 TFCD_C: Tubulin foldi 30.0 4.4E+02 0.0095 29.9 11.3 126 1417-1548 4-138 (193)
338 PF14222 MOR2-PAG1_N: Cell mor 29.9 1.5E+03 0.032 30.3 26.9 51 1716-1768 452-502 (552)
339 COG5369 Uncharacterized conser 29.6 1.2E+03 0.025 30.5 15.0 233 1414-1646 287-543 (743)
340 PF14668 RICTOR_V: Rapamycin-i 28.7 84 0.0018 29.5 4.2 56 1354-1409 3-59 (73)
341 cd03565 VHS_Tom1 VHS domain fa 27.1 8E+02 0.017 26.3 11.9 76 1695-1770 37-119 (141)
342 PF12397 U3snoRNP10: U3 small 25.9 3.5E+02 0.0077 27.9 8.9 72 1919-1996 2-76 (121)
343 PF11841 DUF3361: Domain of un 25.5 3.9E+02 0.0084 29.3 9.0 61 1857-1917 73-134 (160)
344 PF14676 FANCI_S2: FANCI solen 24.6 3.9E+02 0.0084 29.3 9.1 103 208-312 51-156 (158)
345 smart00185 ARM Armadillo/beta- 24.3 1.1E+02 0.0024 24.2 3.8 28 1966-1993 13-40 (41)
346 COG5537 IRR1 Cohesin [Cell div 23.7 1.3E+03 0.028 30.5 14.3 149 1414-1562 268-422 (740)
347 KOG3067 Translin family protei 23.4 1.5E+02 0.0034 32.4 5.5 34 842-875 11-44 (226)
348 PF12783 Sec7_N: Guanine nucle 23.2 9.1E+02 0.02 26.5 12.1 96 1392-1487 35-146 (168)
349 PF11841 DUF3361: Domain of un 23.2 1E+03 0.022 26.1 12.9 94 1397-1492 35-136 (160)
350 PF10350 DUF2428: Putative dea 22.6 1.2E+03 0.027 27.6 13.8 79 1471-1549 60-154 (255)
351 PF09759 Atx10homo_assoc: Spin 21.5 3.8E+02 0.0081 27.1 7.4 65 1475-1542 3-71 (102)
352 KOG1823 DRIM (Down-regulated i 21.3 2.8E+03 0.061 30.7 46.1 162 1632-1802 864-1029(1364)
353 COG2854 Ttg2D ABC-type transpo 21.0 4.9E+02 0.011 29.6 9.0 99 256-359 3-102 (202)
354 cd03562 CID CID (CTD-Interacti 20.5 4.6E+02 0.01 26.7 8.4 70 1922-1991 36-105 (114)
355 PF04388 Hamartin: Hamartin pr 20.3 5.4E+02 0.012 35.3 11.2 67 344-410 80-146 (668)
356 PF12612 TFCD_C: Tubulin foldi 20.3 1.1E+03 0.024 26.7 12.2 32 1734-1765 4-35 (193)
357 PTZ00121 MAEBL; Provisional 20.1 99 0.0021 43.8 4.0 42 837-878 1776-1819(2084)
358 KOG2199 Signal transducing ada 20.0 9.8E+02 0.021 29.9 11.6 105 1909-2013 29-137 (462)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-55 Score=530.56 Aligned_cols=562 Identities=50% Similarity=0.759 Sum_probs=525.4
Q ss_pred HHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1201 l~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
++.+...+...+....+.|++..| +|+++.||..|++++..+++.+|.++...++|.|++.|... .++.+|++.
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhh
Confidence 344444444444444577777667 99999999999999999999999999999999999998772 256899999
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~ 1360 (2058)
+...|.++.|+...||+...++..++..+.+|++.||++++.|++++...........+..++..+++..+...|.++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887755555666666666666778999999999
Q ss_pred HHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 000143 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2058)
Q Consensus 1361 ~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA 1440 (2058)
++++++++.|...+.+..++..+...+.|+++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000143 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
..+.+.++..++.++++.++|.++..+.+..|+++.++++.+|.|+++.|++++.+++.++|.+.+.+.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000143 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2058)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l 1600 (2058)
.++.++++++.|++++.++|.|++++.||+.++.+|++.+++++|++++++|+++.++|++.+++.+++..++++++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHH
Q 000143 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2058)
Q Consensus 1601 ~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~ 1680 (2058)
+|||..+.|+.++.||++.++|.+...+.|+.|++|..+++|+|.+.+.+|+.+|++.+|++.+.+..+.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHH
Q 000143 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2058)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~ 1758 (2058)
.+++++.+.|.++..+++|.++...... ++.+|.+.++++..++..+|..|.+|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999888765 67799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHh
Q 000143 1759 GAGHVLVEHY 1768 (2058)
Q Consensus 1759 ~al~~lv~~~ 1768 (2058)
++...+..++
T Consensus 557 ~~~~~~~~~~ 566 (569)
T KOG1242|consen 557 EAGEVEVLNY 566 (569)
T ss_pred hhhhhhhccc
Confidence 8887765443
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-45 Score=466.97 Aligned_cols=854 Identities=20% Similarity=0.252 Sum_probs=582.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCCC
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~~ 1128 (2058)
..+.+|++.+++||+++|+.|+++|+..+... . .......+..+..++++|++|.. .|.....++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----P--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----c--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999999887222 1 12222334677888999888754 688877677
Q ss_pred CCCH-HhHHHHhc-CCCHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhh
Q 000143 1129 GTDY-SGLFKALS-HSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2058)
Q Consensus 1129 ~~~~-~~ll~~l~-~~~~~vR~aaa~aLa~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~ 1205 (2058)
++.+ ..|+..+. .+...||++.+++++.+++.. |+.|+++++.|++... +.+...|..+...|..+.
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7777 77887665 568899999999999999764 6689999999998742 233468999999888887
Q ss_pred hhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 000143 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTG 1285 (2058)
Q Consensus 1206 ~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg 1285 (2058)
..+++...+ ++..+.++|.+++.++. +.||..++.+++
T Consensus 147 ~~~~~~~~~------------------------------------~~~~l~~lf~q~~~d~s------~~vr~~a~rA~~ 184 (1075)
T KOG2171|consen 147 ETFGNTLQP------------------------------------HLDDLLRLFSQTMTDPS------SPVRVAAVRALG 184 (1075)
T ss_pred hhhccccch------------------------------------hHHHHHHHHHHhccCCc------chHHHHHHHHHH
Confidence 777665433 22333444444444310 124445555555
Q ss_pred HHHhHhccC---CcchHHHHHHHHhhhC----CCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1286 ALAKHLAKD---DPKVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2058)
Q Consensus 1286 ~La~~l~~~---~p~i~~iv~~Ll~~L~----~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~A 1358 (2058)
.++.+++.. .+++..++|.++..+. +.+......+.+++..++...+.-+..++.
T Consensus 185 a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~------------------ 246 (1075)
T KOG2171|consen 185 AFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS------------------ 246 (1075)
T ss_pred HHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH------------------
Confidence 555444310 1223344444443332 222222222233332222211111111111
Q ss_pred HHHHHHHHhhhCccccchhchHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHcCCCC-
Q 000143 1359 AFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQV- 1433 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~-~~~~~R~~al~al~~L~~~lg---~~~~p~l~~llp~Ll~~l~D~~- 1433 (2058)
.++.+..+...++ .+...|+.|+..+..+++..+ +...+|...+++.++..+.|..
T Consensus 247 -------------------~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 247 -------------------QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred -------------------HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc
Confidence 2333333333332 256677777777777777632 4455677788888887765321
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1434 ---------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1434 ---------------~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
......|.+++++++.+++++.+ ..+++.+-..+.+.+|+.|++++.+|+.++++|++.+...+
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23566789999999999998876 88888888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
+.|++.+++.++|+||+||.+||.|+|+++..+... +.+.+.|.|+..+.++
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~------------------------ 443 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST------------------------ 443 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc------------------------
Confidence 999999999999999999999999999999877531 1123333333333332
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH-HHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
.++++...|+.++.++.+- .+...+.||++.+|. .+..+.+.+.+.+++.+..+||+++...++
T Consensus 444 --------------~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 444 --------------QNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred --------------CchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 2356777777777777764 455778999999999 666677788999999999999999999998
Q ss_pred c---CccchHHHHHhhcccCCC---hHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHh---hccCChhHHHHHHHH
Q 000143 1653 E---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYF----EHILPDIIRN---CSHQRASVRDGYLTL 1719 (2058)
Q Consensus 1653 ~---~~~~llp~L~~~L~~d~~---~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~---l~~~~~~vR~~al~~ 1719 (2058)
. ||+.+||.|.+.|.+... ...|-.+..+++.+..++|++.+ ++++..++.. ..+.+...|+..+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 7 899999999999975442 34556678899999999998855 4566655555 344578899999999
Q ss_pred HHHhHHHhchhHHHhHHHHHHHHHHhcc--------CCCH---------------------HH-------HHHHHHHHHH
Q 000143 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLA--------DENE---------------------SV-------RDAALGAGHV 1763 (2058)
Q Consensus 1720 l~~la~~~g~~f~pyl~~ilp~Ll~~L~--------d~~~---------------------~V-------R~~a~~al~~ 1763 (2058)
++.+|+.+|++|.||++.++|++++..+ |+++ .| +..|+.++..
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~ 668 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGE 668 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHH
Confidence 9999999999999999999999997542 1110 01 3456666666
Q ss_pred HHHHhcccch---hchHH-hHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCc--cc------------ccccC-CCCCCCc
Q 000143 1764 LVEHYATTSL---PLLLP-AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS--GK------------ALLEG-GSDDEGA 1824 (2058)
Q Consensus 1764 lv~~~~~~~l---~~llp-~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~--~k------------~~~~~-~~e~~~~ 1824 (2058)
+....+..-. ...++ .+....+..+..+|.+++++++.++.+.-..+ ++ ..... ..|.+..
T Consensus 669 ~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~ 748 (1075)
T KOG2171|consen 669 YAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETE 748 (1075)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHH
Confidence 6555444321 22222 11122345678999999999999986542111 11 00101 1122222
Q ss_pred chHHHHH---HHHHHhCh-----hhHHHHHHHHH--------Hh--h------cC-----------CCHHHHHHHHHHHH
Q 000143 1825 STEAHGR---AIIEVLGR-----DKRNEVLAALY--------MV--R------SD-----------VSLSVRQAALHVWK 1869 (2058)
Q Consensus 1825 ~~e~~~~---~l~~~Lg~-----~~~~~vL~~L~--------~~--~------~D-----------~~~~VR~aA~~~l~ 1869 (2058)
..-...+ ..++..|. +.....+..+. .+ + .| .+..+-..+.+++.
T Consensus 749 vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~ 828 (1075)
T KOG2171|consen 749 VLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA 828 (1075)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111111 12233332 11111111111 10 0 11 11223344556777
Q ss_pred HHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHH
Q 000143 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIG 1946 (2058)
Q Consensus 1870 ~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~a 1946 (2058)
.++...+..+.+.+..+.+.++..+.+....-|+.|..++++++..+|+. +...++|.+..++.|.+++||++++++
T Consensus 829 ~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYG 908 (1075)
T KOG2171|consen 829 ALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYG 908 (1075)
T ss_pred HHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77777777888888888888888888777666999999999999999976 467899999999999999999999999
Q ss_pred HHHHHHhhChhhhHhHHhhHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHhcCC---Cc
Q 000143 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDS------ILEVRESAGLAFSTLFKSAGM-QAIDEIVPTLLHALED---DQ 2016 (2058)
Q Consensus 1947 L~eii~~~~~~~l~~~~~~ll~~L~~~L~D~------d~~VR~~Aa~a~~~l~~~~g~-~~~~~ilp~Ll~~L~~---~~ 2016 (2058)
+|-+.... ++.+.+.....+|.|...+..+ +..+++||..||++++.+... ..+++++|.|+.+|+- .+
T Consensus 909 iGvlaq~~-g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~e 987 (1075)
T KOG2171|consen 909 MGVLAQFG-GEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKE 987 (1075)
T ss_pred HHHHHHHc-CcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchh
Confidence 99665544 4456777778888888877544 345789999999999877653 2489999999999983 34
Q ss_pred chHHHHHHHHHHHhhcCCccch---hhhhhhcc
Q 000143 2017 TSDTALDGLKQILSVRTTAVLP---HILPKLVH 2046 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~~~~~~lp---~lip~L~~ 2046 (2058)
+....+..|+++++.+++.++. ..+|+++.
T Consensus 988 Ea~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~ 1020 (1075)
T KOG2171|consen 988 EAVPIYTFLSDLYESNHPIVLGPNNQNIPKILS 1020 (1075)
T ss_pred hhhhHHHHHHHHHHhCCCeeeCCCcccchHHHH
Confidence 5668999999999887665544 25666543
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-34 Score=364.80 Aligned_cols=809 Identities=19% Similarity=0.213 Sum_probs=555.0
Q ss_pred chHHHHHHHHHHhhcCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000143 1110 EKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2058)
Q Consensus 1110 ~~~~r~~a~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 1189 (2058)
.+.++++|+....+ .|++-++.|++...++++..|+.|...|..+.+..+....+++..+...+.+.+.++
T Consensus 101 ~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~------ 171 (1075)
T KOG2171|consen 101 ADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP------ 171 (1075)
T ss_pred HHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC------
Confidence 34444555543332 464333889999999999999999999999999999888888888888887776653
Q ss_pred CchhhHHHHHHHHHhhhhhCCC--Ch-------HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc---cchhhHHH
Q 000143 1190 GWLGRQGIALALHSAADVLRTK--DL-------PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFP 1257 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~--~~-------~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~---~~~~~Ll~ 1257 (2058)
+..+|.+++.|++.++...+.+ .+ |.++..+ +..+.+.+.+.-..++++..+++...++ .++.+++.
T Consensus 172 s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl-~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 172 SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL-QEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQ 250 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh-HhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 2239999999999999988632 22 3333333 3567778888888899999998887654 33444444
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC----CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc
Q 000143 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333 (2058)
Q Consensus 1258 ~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~----~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~ 1333 (2058)
+.... +.+.+-.+.+|..|++++..++++-+.. .++.+.+++.++..+.+-..+
T Consensus 251 ~~l~I----a~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D------------------ 308 (1075)
T KOG2171|consen 251 FSLEI----AKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD------------------ 308 (1075)
T ss_pred HHHHH----hhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc------------------
Confidence 44444 3444445579999999999999862211 234444554444443322111
Q ss_pred chHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1334 EAPTLVSRLLD--QLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1334 ~~~~~v~~Ll~--~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
+.-.+ .+.+++.....+.|.+++..++.++|++.+- +.+++.+.+.+++. +|..|++++++++.++++++
T Consensus 309 ------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~-p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 309 ------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL-PPLFEALEAMLQST-EWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred ------hhhccccccccccccCcHHHHHHHHHHHHhcCChhheh-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH
Confidence 00000 0111112345678899999999999998874 57899999999998 99999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHhccCC-ChHHHHHHHHHHHHHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la 1486 (2058)
+.+.+.++++++.+++.+.|++|.||.+|+.|++++...+.++.- ..+.|.+...+++. +.++..+|+.++-++.
T Consensus 381 ~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 381 DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988643 55677788888765 5788888888888877
Q ss_pred hhCh-hhHhhhhhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHH
Q 000143 1487 YCAP-QQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2058)
Q Consensus 1487 ~~~p-~~l~~~L~~Iip-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~ 1561 (2058)
+.++ +.+.+||+.++. .+..+++...+.||+.+..+++.++...++ ||++.++|.|...+...+..
T Consensus 461 E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~--------- 531 (1075)
T KOG2171|consen 461 EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK--------- 531 (1075)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch---------
Confidence 7665 569999999999 455556677899999999999999998775 67888888888877665421
Q ss_pred hccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh---hCCCCHHHHHH
Q 000143 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSV 1638 (2058)
Q Consensus 1562 ~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~---l~d~~~~vR~~ 1638 (2058)
.....|.+..++++.++..++. +.|.|+...++..+... ..|.+...|..
T Consensus 532 --------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 532 --------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred --------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 1125677778888888887765 67888998999988887 44556667999
Q ss_pred HHHHHHHHHHhhccc---CccchHHHHHhhcccCCC-----------------h------------------HHHhhHHH
Q 000143 1639 AARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNS-----------------N------------------VERSGAAQ 1680 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~-----------------~------------------~~R~~aa~ 1680 (2058)
.+.+++.+++.+|++ |++.+||.++.+.+.+++ + ..+..++.
T Consensus 585 ~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~ 664 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACE 664 (1075)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHH
Confidence 999999999999998 677888888876642110 0 12445677
Q ss_pred HHHHHHHHhchh---HHHHhhH-HHHHhhccCChhHHHHHHHHHHHhHHHhch-------hHHHhHHHHHHHHHHhccCC
Q 000143 1681 GLSEVLAALGTV---YFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGV-------QFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1681 ~L~~i~~~~g~~---~l~~llp-~Ll~~l~~~~~~vR~~al~~l~~la~~~g~-------~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
.|+.++...+.. |+++++. .+....-..+..||.+++.++..+..+... ...+....+.|.++..+.++
T Consensus 665 ~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E 744 (1075)
T KOG2171|consen 665 ALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEE 744 (1075)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcC
Confidence 788887776654 5555555 222222345789999999999887765422 23345566778888888765
Q ss_pred -CHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCC--c-ccccccCCCCC--CC
Q 000143 1750 -NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT--S-GKALLEGGSDD--EG 1823 (2058)
Q Consensus 1750 -~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~--~-~k~~~~~~~e~--~~ 1823 (2058)
+.+|-...++++...++.++...+.. ..++..-..+...++.+..+. . .+...+..+.+ +.
T Consensus 745 ~e~~vl~~vl~~f~~~i~~~G~~~L~~-------------~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~ 811 (1075)
T KOG2171|consen 745 PETEVLSEILESFAECIEVMGDNCLNE-------------DGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEED 811 (1075)
T ss_pred CcHHHHHHHHHHHHHHHHhcCcccCCc-------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 46777888888888888887553221 001111011111111111100 0 00000000000 00
Q ss_pred cc------hHHHHH---HHHHHhChh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 000143 1824 AS------TEAHGR---AIIEVLGRD---KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2058)
Q Consensus 1824 ~~------~e~~~~---~l~~~Lg~~---~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~ 1891 (2058)
.. .+.+.+ .+...++.. +++.+++.+..........-|+.|+.++..++..++.....+.+.+++.++
T Consensus 812 ~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~ 891 (1075)
T KOG2171|consen 812 LDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVL 891 (1075)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 00 111111 223333433 344555555555444444449999999999999998888899999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCCC------hhHHHHHHHHHHHHHHhhChhhhHhH
Q 000143 1892 SSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPS------ASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2058)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~~------~~vR~~a~~aL~eii~~~~~~~l~~~ 1962 (2058)
..+.|.++++|+.|+..+|.++...|..+ ....+|.|...+..+. ...+.++|.+++.++...+.. .+
T Consensus 892 ~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~--i~- 968 (1075)
T KOG2171|consen 892 EALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNR--IP- 968 (1075)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCcc--Cc-
Confidence 99999999999999999999999988763 4566777777665433 234578999999999876543 34
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHhChh---hHHHHHHHHHHhc
Q 000143 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLF---KSAGMQ---AIDEIVPTLLHAL 2012 (2058)
Q Consensus 1963 ~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~---~~~g~~---~~~~ilp~Ll~~L 2012 (2058)
+++++|.+...+- -.+=++.+...+.-++ +.-.+. +-++.+|.++..+
T Consensus 969 vdqvl~~~l~~LP--l~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen 969 VDQVLPAWLSWLP--LKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred HHHHHHHHHHhCC--CccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence 6889999988772 1111333444444443 332221 2234566665554
No 4
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=3.7e-39 Score=397.29 Aligned_cols=318 Identities=25% Similarity=0.344 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhcchh
Q 000143 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2058)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~s~~i~~~l~~~~~kE~~E~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2058)
||||+.+++||..++. . .+|.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred HH-HHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHHHHHHhhccccc-----hhHHHHHHHHHHHhhhhhhHHHhhhH
Q 000143 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2058)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~ 496 (2058)
++ +||+|+.+||.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++... ...+.+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~--~~~~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW--KLDKIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc--cchhhhh--hh
Confidence 87 99999999999999 55667888999999999999999999665 4455554441111 1112222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000143 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2058)
Q Consensus 497 ~~~~~~~~~~k~~f-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~~~~--~~~vr~~a~~ 572 (2058)
...|.++.++||+| +++|+|+| .++||.+|+++++++++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47888888999997 67999999 6688889999999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-cHHHHHHHHHHHHhhhhhhhhccCCCCCCcccCCCCCCCCChHHHHHHHHhhhhhhccC-------Cc
Q 000143 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALAR-------GP 644 (2058)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 644 (2058)
.+++++.++|+ ++..++.+||+|+.... ..++++. ...........+.+++ |........ .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~-------~~~~~s~--~~~~~~~~~~~v~~ai-~~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSE-------TGDKESS--AENSSDKNLSPVLSAI-CLAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcc-------ccccccc--cccccccccccchHHH-HhhhHhhhccccchhHHH
Confidence 99999999999 69999999999998662 2232221 1111112233455555 333322111 26
Q ss_pred chhhhHhhhcCCCccccccccccchhHHHHhHHhhCCChHHHHhhcHH
Q 000143 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2058)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~l~~~~~dp~~lv~~~~~ 692 (2058)
++++++|++||||+|+. +++|+++|++ +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~~~---~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLCQR---AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHHHH---cCCCHHHHHHhcCC
Confidence 78999999999999984 4799999533 99999999999964
No 5
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-35 Score=354.39 Aligned_cols=662 Identities=17% Similarity=0.225 Sum_probs=466.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHH-------------------H
Q 000143 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA-------------------E 1118 (2058)
Q Consensus 1058 ~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a-------------------~ 1118 (2058)
++.++|..++|||..+|..|...|.+.. ..+|+.++..+.+++ +........|..| .
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl-~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVL-ANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHH-hccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 3456677788888888888888887664 335555555555543 2222234444443 3
Q ss_pred HHHhhcCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhH
Q 000143 1119 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2058)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~ 1195 (2058)
+.|-....+.++.+ ..++..|+++.+..+..|++++++++.. .|. .|++++..|..... . ..+..+|+
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~----~-----~~~~~~k~ 148 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVG----E-----EQASMVKE 148 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcc----c-----ccchHHHH
Confidence 46887776666777 7788999999999999999999999753 453 67777777665422 1 12226899
Q ss_pred HHHHHHHHhhhhhCCCCh----HHHHHHHHHhh-ccCCCHHHHHHHHHHH---HHHHH-hhCcc-chhhHHHHHHHHhcc
Q 000143 1196 GIALALHSAADVLRTKDL----PVIMTFLISRA-LADTNADVRGRMLNAG---IMIID-KHGRD-NVSLLFPIFENYLNK 1265 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~~~~~----~~l~~~Li~~~-L~d~~~~VR~~al~a~---~~~i~-~~g~~-~~~~Ll~~l~~~L~~ 1265 (2058)
++..++|+++..+.++.+ +.++..++... -..++..||-++++|+ .++.. .+..+ ..+.+|.+..+.-
T Consensus 149 ~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-- 226 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-- 226 (859)
T ss_pred HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc--
Confidence 999999999999888754 45666666433 3467889999998885 44444 33333 4667887654431
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHh-HhccCCcchHH-HHHHHHhhhCCCCHHHHHHHHHhhHhhH--------------h
Q 000143 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLM--------------Q 1329 (2058)
Q Consensus 1266 ~~~~~e~~~~vR~~av~~Lg~La~-~l~~~~p~i~~-iv~~Ll~~L~~~~~~V~~av~~~L~~l~--------------~ 1329 (2058)
...+. .++.+|+.||.++.. |+....||+.+ ++...+.++.+++++|...+.+--++.. .
T Consensus 227 --q~~d~--~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 227 --QSPDE--EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred --cCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11223 799999999999985 55555677776 8888899999998888654443211111 0
Q ss_pred h--------c-ccchHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH
Q 000143 1330 S--------M-QDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2058)
Q Consensus 1330 ~--------~-~~~~~~~v~~Ll~~L~~~------~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~ 1394 (2058)
. + ....+..+|.+++.|.++ |+|..-++|..||..+++..|++.++ +++||+.+.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 0 0 122457889999998863 47999999999999999999999986 8999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhcc
Q 000143 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~ 1468 (2058)
.|++|.++||++.++.. ..+.|++.+.+|.++..+.|+.-.||+++.++++++++.++.... ..+++.+++++.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999876 467899999999999999999999999999999999987764332 233333444443
Q ss_pred CCChHHHHHHHHHHHHHHhhChhh---------HhhhhhhHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHhhcCchhH-
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQ---------LSQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEI- 1535 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~---------l~~~L~~Iip~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2058)
| .+|+-..+|.++..+++++++. ..++++.|+..|++.-+ | .....|.+|.++|+.+.+...+...
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 3555556666666666555442 12345555555555443 2 3355666666666666665543322
Q ss_pred --HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1536 --ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1536 --~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
..+.+.++..+. +++. .+ -..+.+. +.-.++...-|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl~-------q~i~--~~--~l~~~dr---------------~q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKLD-------QTIS--SQ--ILSLADR---------------AQLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHHH-------HHHH--HH--hccHhhH---------------HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 222222222111 1111 00 0000000 00123445556666666655443 78
Q ss_pred hhhHhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh
Q 000143 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~ 1689 (2058)
.++.+.+|..+.+.++. .+..+.+.|.-+++.++..+|.. |++.+.|+|...|++..+..+-..+..-.|++++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999987 45568899999999999999986 889999999999987776655555666669999999
Q ss_pred chh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc---cCC--------CHHH
Q 000143 1690 GTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL---ADE--------NESV 1753 (2058)
Q Consensus 1690 g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L---~d~--------~~~V 1753 (2058)
+.+ +.+.+|..+.+.++++ +..||..++++||+|+.++|.+|.+|++.++|.+.++- .|+ ..++
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 987 6789999999999987 78999999999999999999999999999999998764 122 1358
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000143 1754 RDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1754 R~~a~~al~~lv~~~~~ 1770 (2058)
|++++++...++..++.
T Consensus 751 Re~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 751 REGILEAYTGIIQGLKT 767 (859)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 89999999888877763
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-35 Score=345.83 Aligned_cols=719 Identities=17% Similarity=0.245 Sum_probs=504.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCC
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~ 1212 (2058)
..+++.-.+++..+|+++-..+-..-. +|+.-..++--|.+. + +..-..|.++.+.|++-...-.+..
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~~IL~~~-----~------~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLIYILIRA-----K------SEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHhc-ccchhceeeEEEecc-----c------ccchhHHHHhhhhHhccccccccCC
Confidence 445555668899999999887766543 565322222222211 1 2334579999999997654322222
Q ss_pred hHHHHHHHH---HhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh
Q 000143 1213 LPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2058)
Q Consensus 1213 ~~~l~~~Li---~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~ 1289 (2058)
-+....++- -++++|.++.+|.........++..+|..+|++++|.+.++|..++. ...+.|+.+|.++++
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICE 157 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHh
Confidence 223333331 26899999999987776677777888888999999999999987432 456889999999996
Q ss_pred H----hccC--CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1290 H----LAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1290 ~----l~~~--~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
. ++.+ ...+..++|++++.++++++.+|..+..|+..++......+ ..++..++. +.+++++.+|+..+
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC 236 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVC 236 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHH
Confidence 3 3322 23478899999999999999999999999988876544333 344445554 33677899999999
Q ss_pred HHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cccchhhHHHHHHHHHHHcC------
Q 000143 1360 FGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFS------ 1430 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l--g~~~~p~l~~llp~Ll~~l~------ 1430 (2058)
.++.-+......+.++ -..|++++.+..++. |..+--.|+..+-.+++.. ...+.||+.+++|.++..+.
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 9999998866544443 126888888888877 5667777777788888753 35688999999999887542
Q ss_pred -----CC---------------------------------------------CHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1431 -----DQ---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1431 -----D~---------------------------------------------~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
++ +...|++.+.+++.++..++.+.++.++
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 00 1468999999999999999988889999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2058)
|.+-+.|.+++|.+|.+++.++|+++++|-+.+-+|||.++|.++.+|+|..+-||.-+||+|++++.++-..
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~------- 468 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD------- 468 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred HHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1541 ~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
+.. ..+..++.-+.+.+-|.+..|+..||.++..+-+- ....+.||+..+
T Consensus 469 --------~~~--------------------~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~--A~~eLVp~l~~I 518 (885)
T KOG2023|consen 469 --------SRD--------------------EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE--AGEELVPYLEYI 518 (885)
T ss_pred --------ChH--------------------hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--ccchhHHHHHHH
Confidence 100 01111223333444566667788888887777663 345788999888
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHH
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2058)
+..+..++.--..+--.....|+|.++..+|.. |..-+||.|++....
T Consensus 519 L~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~--------------------------- 571 (885)
T KOG2023|consen 519 LDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL--------------------------- 571 (885)
T ss_pred HHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh---------------------------
Confidence 888887765322111224567888888887754 455566666554431
Q ss_pred HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhc
Q 000143 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ 1775 (2058)
+.|.+..+ --.+.|+..++.++|..|.||.+.+....+..+.+ ++..+.....+....
T Consensus 572 ---------lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~-----------t~q~~~~~~~~~~~~- 629 (885)
T KOG2023|consen 572 ---------LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK-----------TLQLLAKVQQDPTVE- 629 (885)
T ss_pred ---------cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH-----------HHHHHHhccCCcccc-
Confidence 11111111 12457888899999999999976655444433221 011111110000000
Q ss_pred hHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC
Q 000143 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2058)
Q Consensus 1776 llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D 1855 (2058)
.| |.| +
T Consensus 630 -~p-----------------------------------------dkd-f------------------------------- 635 (885)
T KOG2023|consen 630 -AP-----------------------------------------DKD-F------------------------------- 635 (885)
T ss_pred -CC-----------------------------------------Ccc-e-------------------------------
Confidence 00 000 0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhh
Q 000143 1856 VSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSR 1930 (2058)
Q Consensus 1856 ~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~ 1930 (2058)
. -.+++.+..++.+.+..+.+.+ ..++..+..++.|+.+++|+.+...+|++++.+.+.+ ...++|.+..
T Consensus 636 ---i--I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 636 ---I--IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA 710 (885)
T ss_pred ---E--EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 0 0112222222323333322222 1367778889999999999999999999999987665 4578888876
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhC---hhhHHHHH
Q 000143 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAG---MQAIDEIV 2005 (2058)
Q Consensus 1931 ~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~--D~d~~VR~~Aa~a~~~l~~~~g---~~~~~~il 2005 (2058)
-++.+...+-.+||+++||+...++.+ ..+|+..++..|...++ ..+..+-++.+-++|++....+ .++++.++
T Consensus 711 Nl~~~~isv~nNA~WAiGeia~k~g~~-~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 711 NLNPENISVCNNAIWAIGEIALKMGLK-MKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred cCChhhchHHHHHHHHHHHHHHHhchh-hhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHH
Confidence 666666778899999999999999875 46888888877777765 4467899999999999986554 36889999
Q ss_pred HHHHHhcC---CCcchHHHHHHHHHHHhhcCCccc
Q 000143 2006 PTLLHALE---DDQTSDTALDGLKQILSVRTTAVL 2037 (2058)
Q Consensus 2006 p~Ll~~L~---~~~~~~~al~aL~~i~~~~~~~~l 2037 (2058)
.++...|. |.+++++|++|+++++..+|..+.
T Consensus 790 ~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 790 RPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHheeeCchhhh
Confidence 99888765 456799999999999998876543
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-31 Score=310.79 Aligned_cols=683 Identities=18% Similarity=0.212 Sum_probs=490.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhc--C--CCCC---
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRY--G--YDFG--- 1129 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~--~--~~~~--- 1129 (2058)
.++.++|+..+||++++|..+.+.+.+.. .+|.+..|+.-+.+-....++..|.+|.-+...+ + ...+
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~-----~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFN-----LFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHh-----cccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 36778999999999999999999998875 2344456666666666667788898887765542 1 1111
Q ss_pred CCH--HhHHHHhcCCCHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1130 TDY--SGLFKALSHSNYNVRLAAAEALATALDEYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1130 ~~~--~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
.+| ..+++.+.+.++.+|.+..-.+.+++..+. ..|+++++.|.+.+. +.......++.-||..+++
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~----------s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLD----------SPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhc----------CCcccccchhHHHHHHHHh
Confidence 223 778999999999999999999998886543 467888888887753 1234567888999998875
Q ss_pred ----hhCCCC----hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHH
Q 000143 1207 ----VLRTKD----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278 (2058)
Q Consensus 1207 ----~~~~~~----~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~ 1278 (2058)
.++.+- ++.+++-++ +...++++.+|..++.|...+|-.........+=.+++.+..- +.+++. .||.
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl-~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFal-anD~~~--eVRk 233 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFL-QFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFAL-ANDEDP--EVRK 233 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHH-HHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHH-ccCCCH--HHHH
Confidence 233321 222333222 4567899999999999988877554433222222333333332 434333 8999
Q ss_pred HHHHHHHHHHh-HhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc------ccchHHHHHHHHHHHh----
Q 000143 1279 GVVIFTGALAK-HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRLLDQLM---- 1347 (2058)
Q Consensus 1279 ~av~~Lg~La~-~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~------~~~~~~~v~~Ll~~L~---- 1347 (2058)
.++.++..+-+ +.++..|++..+++.++..-+|.++.|...+++....+...- .+....++|.+++.+.
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999999886 456667999999999999999999999887777554444321 2223444454443321
Q ss_pred -----c------------------------------------CC----------CHHHHHHHHHHHHHHHhhhCccccch
Q 000143 1348 -----K------------------------------------SD----------KYGERRGAAFGLAGVVKGFGISSLKK 1376 (2058)
Q Consensus 1348 -----~------------------------------------~~----------~~~vR~~Aa~~L~~l~~~~g~~~l~~ 1376 (2058)
+ ++ +|+.|+-++.+|+.+++-+|.+.++
T Consensus 314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~- 392 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLP- 392 (885)
T ss_pred cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHH-
Confidence 1 00 2889999999999999999887775
Q ss_pred hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---
Q 000143 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--- 1453 (2058)
Q Consensus 1377 ~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--- 1453 (2058)
.++|.|.+.+.++ +|.+||+++.|+|.|++++-..|-||++.++|.++.++.|..+-||..+++++.+.+.....
T Consensus 393 -~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 393 -ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred -HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 7899999999886 99999999999999999999999999999999999999999999999999999998765443
Q ss_pred -hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhh
Q 000143 1454 -QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1454 -~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~---D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
+.++.++..++..+-|.+-+++.+||.++..+-+.+..++-+|+..|+..+...+. ..+-.+-. .|++.+++.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAds 547 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADS 547 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHH
Confidence 23467777788888899999999999999999999999999999999999887764 33333434 445555554
Q ss_pred c----Cch-hHHhHHHHHHh---ccCCCChhHH---HHHHHHHh---ccccccCChhhHhhHHHHHHHhh-------cC-
Q 000143 1530 I----KNP-EIASLVPTLLM---GLTDPNDHTK---YSLDILLQ---TTFVNTVDAPSLALLVPIVHRGL-------RE- 1587 (2058)
Q Consensus 1530 ~----~~~-~i~~lvp~Ll~---~l~d~~~~vr---~al~~L~~---~~f~~~~~~~~l~~llp~L~~~L-------~d- 1587 (2058)
+ .+| |++-++|.|++ .+.|.++..- +|+.++.. ..|.++.. |.....+.++.+.+ .+
T Consensus 548 vg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~-~Vy~Rc~~il~~t~q~~~~~~~~~ 626 (885)
T KOG2023|consen 548 VGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQ-PVYQRCFRILQKTLQLLAKVQQDP 626 (885)
T ss_pred HHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHHHHHhccCCc
Confidence 4 344 68889999876 4667766552 56665543 46777654 22333333333221 11
Q ss_pred ----CCHHHHHHHHHHHHHHHhhhCCCCchhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---Cccch
Q 000143 1588 ----RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDL 1658 (2058)
Q Consensus 1588 ----~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~l 1658 (2058)
++.+.-..+...+..+++.++.. +.+.+ ..++..+...+.|+.|+||..+..-+|.+++.+.+. +..++
T Consensus 627 ~~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~f 704 (885)
T KOG2023|consen 627 TVEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADF 704 (885)
T ss_pred cccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 11122233555666666655432 22222 347888999999999999999999999999988655 45678
Q ss_pred HHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1659 lp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+|.+...+..+.-+ +-..|.+++|+++..+|.+ ++..++..+...++.+ ...+-+...-.+|.++...++.++|
T Consensus 705 l~~lg~Nl~~~~is-v~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 705 LPILGANLNPENIS-VCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHHhhcCChhhch-HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 88887776644433 5667999999999999986 4566666666655544 5567777778889999999999999
Q ss_pred hHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHh
Q 000143 1734 YLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~ 1768 (2058)
+++.++.+-...++.- +.+-++.|.+.+..++..-
T Consensus 784 ~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vN 819 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVN 819 (885)
T ss_pred hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeC
Confidence 9999998887766532 2234678888887776543
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=1.1e-25 Score=276.23 Aligned_cols=887 Identities=18% Similarity=0.194 Sum_probs=599.2
Q ss_pred HHHH-HHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCH-Hh
Q 000143 1057 NEVA-SALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SG 1134 (2058)
Q Consensus 1057 ~~l~-~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~-~~ 1134 (2058)
++.. .|++...++|.+.|.+|...|...... + + +. .+.+..... ..
T Consensus 4 ~~~~i~LlekmtssDKDfRfMAtsDLm~eLqk-------d---s----i~------------------Ld~dSe~kvv~~ 51 (1233)
T KOG1824|consen 4 MQVGINLLEKMTSSDKDFRFMATSDLMTELQK-------D---S----IK------------------LDDDSERKVVKM 51 (1233)
T ss_pred hHHHHHHHHHccCCCcchhhhhHHHHHHHHHh-------h---h----hh------------------ccccchhHHHHH
Confidence 4445 889999999999999999999876511 0 0 01 111111234 77
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCC-
Q 000143 1135 LFKALSHSNYNVRLAAAEALATALDEYPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD- 1212 (2058)
Q Consensus 1135 ll~~l~~~~~~vR~aaa~aLa~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~- 1212 (2058)
+++.|+|.++.|++-|.+++|.++...++ .+..+...|...... ..-+.|.....+++.....+.+..
T Consensus 52 lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s----------~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 52 LLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLS----------GKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcc----------chhhhccHHHHHHHHHHhcCCCccc
Confidence 88999999999999999999999977665 566666666654321 122466666777776544443311
Q ss_pred ---hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh
Q 000143 1213 ---LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2058)
Q Consensus 1213 ---~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~ 1289 (2058)
.+.++ ..+.|.|...+.. . +..+.++-.++..++.+-.
T Consensus 122 ~~la~tV~-----------------------------------~~~t~~l~~~i~~---q-e~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 122 SFLAATVC-----------------------------------KRITPKLKQAISK---Q-EDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred cccccHHH-----------------------------------HHHHHHHHHHhhh---c-ccchhhHHHHHHHHHHHHH
Confidence 11111 2223333333221 0 1112355445555555444
Q ss_pred HhccCCcch-HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1290 HLAKDDPKV-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK 1367 (2058)
Q Consensus 1290 ~l~~~~p~i-~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~ 1367 (2058)
.+..-.|.+ ..+..-++..+..+-..||+.++.|++.+....+. ...+++..++..|.+......-+...++|+.+..
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 444333333 34566677788888899999999999999877644 3577888899888887777777788999999998
Q ss_pred hhCccccc-hhchHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CC-----------
Q 000143 1368 GFGISSLK-KYGIAATLREGLA--DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ----------- 1432 (2058)
Q Consensus 1368 ~~g~~~l~-~~~il~~L~~~l~--~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~----------- 1432 (2058)
..|-..-. -..++|.+.++.+ +.++.+.|+.++.+++.+...+++.+.||++.++..+++.+. |+
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 77643321 1267888888772 233678999999999999999999999999999999888653 10
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHhhhhh---hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 000143 1433 ----------------------VVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2058)
Q Consensus 1433 ----------------------~~~VR~aA~~al~~l~~~l~~~---~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~ 1487 (2058)
++.||++|+.|+..++..-... ....+-|.++.++.+.+..+|.....+.-.+..
T Consensus 323 ~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 323 AMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred hhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1479999999999987654432 226677888899988888888877776666654
Q ss_pred hCh---------------------hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHH
Q 000143 1488 CAP---------------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLL 1543 (2058)
Q Consensus 1488 ~~p---------------------~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll 1543 (2058)
..+ ..++...+.|+..+-+.+++.....|..+..-|..+....++ +++..++|.+.
T Consensus 403 qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 403 QTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred cCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 321 124445566777777777766666777788888888777664 57789999999
Q ss_pred hccCCCChhHH---HHHHHHHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC--C---Cch
Q 000143 1544 MGLTDPNDHTK---YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--P---KDM 1613 (2058)
Q Consensus 1544 ~~l~d~~~~vr---~al~~L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~--~---~~l 1613 (2058)
..+.|.+.... .++..+.. +...+..-.|.+..+.|.+.....|+-+.+-.+|..+.+.+++.+.. + -+.
T Consensus 483 ~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~ 562 (1233)
T KOG1824|consen 483 YSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA 562 (1233)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC
Confidence 99998764322 33333322 22333344567778889999999999999999998888888887643 1 456
Q ss_pred hhhHhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
.||...++....+.+. |.+.+||+.|+.|+|.+...+|+. .++.++|.+++.|+++. .|..++.++..++..
T Consensus 563 ~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 563 SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMS 639 (1233)
T ss_pred ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhc
Confidence 7888888887777654 788999999999999999999964 57889999999998643 799999999888754
Q ss_pred hc----hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH-HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1689 LG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1689 ~g----~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl-~~ilp~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
.- ...+.++++.+...++......|.+.+.++..+..+.+..+.+++ +.++..+...+.+.+-.+.+.+...+..
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 21 124578888888888888889999999999999998887776654 4566666667777776777777777777
Q ss_pred HHHHhccc---chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh--hCCccccc------ccCCCCC--CCcchHHHH
Q 000143 1764 LVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV--AGTSGKAL------LEGGSDD--EGASTEAHG 1830 (2058)
Q Consensus 1764 lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~--~g~~~k~~------~~~~~e~--~~~~~e~~~ 1830 (2058)
+...+... ....+++.+...+.++- +...+...+-.+.... ++..+... +.....+ .+....++.
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~ 797 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAY 797 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHH
Confidence 66554432 22346777766665432 1122222222221111 11111000 0000000 000122221
Q ss_pred H-------HHHHHhChhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHH
Q 000143 1831 R-------AIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1901 (2058)
Q Consensus 1831 ~-------~l~~~Lg~~~~~~vL~~L~~~~--~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~ 1901 (2058)
- ++....++... .+...+.... ...+..+|-.|+-.++.+..+.+..- -+.+...++++++++++++
T Consensus 798 ~siA~cvA~Lt~~~~~~s~-s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edv 873 (1233)
T KOG1824|consen 798 YSIAKCVAALTCACPQKSK-SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDV 873 (1233)
T ss_pred HHHHHHHHHHHHhccccch-hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHH
Confidence 1 12222232211 1222222222 23334566667777777665443222 2233446778899999999
Q ss_pred HHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHH
Q 000143 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2058)
Q Consensus 1902 R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~V 1981 (2058)
+.+|+.+||.+... .++.++|.+...+.+ .|..+.-...+|.+++...+.+.+.+|.+.++..|.+........+
T Consensus 874 ksAAs~ALGsl~vg----nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegt 948 (1233)
T KOG1824|consen 874 KSAASYALGSLAVG----NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGT 948 (1233)
T ss_pred HHHHHHHhhhhhcC----chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhh
Confidence 99999999998642 456777777666543 3444556677999999998888889999999999999998888999
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhh
Q 000143 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 1982 R~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
|...++|+|.++-.- -+..+|.|-..+.++. .|-.++++++..+..+++.+-|.+-+
T Consensus 949 R~vvAECLGkL~l~e----pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~ 1007 (1233)
T KOG1824|consen 949 RNVVAECLGKLVLIE----PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQ 1007 (1233)
T ss_pred HHHHHHHhhhHHhCC----hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHH
Confidence 999999999998532 3578999999888754 57788999988888877777666544
No 9
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.97 E-value=9.4e-26 Score=269.18 Aligned_cols=708 Identities=16% Similarity=0.204 Sum_probs=480.4
Q ss_pred CCCCcHHHHHHHHHHHHccccchHHHHHHHHHHHHhcCCh-HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCC
Q 000143 1017 LLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQP-NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLP 1093 (2058)
Q Consensus 1017 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~ 1093 (2058)
++......+++.|+.+.++.|.+++.+.+.|.+.++...+ +-+.++|-=+.++ +.+-|+-....|+.+.-... ++
T Consensus 357 ~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklD-dl- 434 (1172)
T KOG0213|consen 357 DEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLD-DL- 434 (1172)
T ss_pred cccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhc-cc-
Confidence 4566778999999999999999999999999999999866 5667777777776 56667777666665541110 11
Q ss_pred chhhhhhHhhh----hcCCCchHHHHHHHHHHhh----cCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCch
Q 000143 1094 ENIEVSTSLWI----AVHDPEKSVAEAAEDIWDR----YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSI 1165 (2058)
Q Consensus 1094 ~~~~~~~~~~~----a~~d~~~~~r~~a~~~w~~----~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~ 1165 (2058)
...|..+|.. ...|+|.-.|-...++..+ .|+. ..+..+-+++++.+..||+..+++++..+.... +
T Consensus 435 -vrpYVhkILvViepllided~yar~egreIisnLakaaGla--~mistmrpDidn~deYVRnttarafavvasalg--i 509 (1172)
T KOG0213|consen 435 -VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA--TMISTMRPDIDNKDEYVRNTTARAFAVVASALG--I 509 (1172)
T ss_pred -chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH--HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC--c
Confidence 0112222211 1234444444444444332 2322 122556678899999999999999999986542 2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHH---HHHHHHHhhccCCCHHHHHHHHHHHHH
Q 000143 1166 QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV---IMTFLISRALADTNADVRGRMLNAGIM 1242 (2058)
Q Consensus 1166 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~---l~~~Li~~~L~d~~~~VR~~al~a~~~ 1242 (2058)
+.++..|-..+. +..+|+.|+++..+...++..++...+++ ++..+ .+++.|....||.....+...
T Consensus 510 p~llpfLkavc~---------SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii-~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 510 PALLPFLKAVCG---------SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII-EHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHHHHHHHHHhc---------cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH-HHhhcccchhhhhHHHHHHHH
Confidence 334444433322 13589999999999999999888776665 34433 689999999999887776666
Q ss_pred HHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCCCCHHHH
Q 000143 1243 IIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ 1317 (2058)
Q Consensus 1243 ~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~~~~~V~ 1317 (2058)
+.+.. |.+.++.++..+++-+.+. .+. .-.+-+.++|.++..++.. .-+..+++-.++..+..|+++..
T Consensus 580 laeaa~Pygie~fDsVlkpLwkgir~h-rgk-----~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 580 LAEAATPYGIEQFDSVLKPLWKGIRQH-RGK-----ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHc-cCh-----HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 55544 4456777777777765541 111 1122244555554322221 12455677778888888888877
Q ss_pred HHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCH
Q 000143 1318 RAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2058)
Q Consensus 1318 ~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~ 1393 (2058)
+.+.+.+.......+-+- .+.++.+|... |. |+.|. | -.
T Consensus 654 kivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f-----w~-rrmA~-----------------------------d--rr 696 (1172)
T KOG0213|consen 654 KIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF-----WG-RRMAL-----------------------------D--RR 696 (1172)
T ss_pred HHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh-----hh-hhhhc-----------------------------c--cc
Confidence 655544333322211110 12222222211 11 11111 0 00
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhcc
Q 000143 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~ 1468 (2058)
..|+ .+..-..||...|. . .++.-++..+.|+.+..|....++...++..++..++ .+++..++..++
T Consensus 697 ~ykq-lv~ttv~ia~KvG~--~----~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 697 NYKQ-LVDTTVEIAAKVGS--D----PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred chhh-HHHHHHHHHHHhCc--h----HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 0111 12233456666663 2 3455566778899999999999999999998887554 566777777777
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHh
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLM 1544 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~ 1544 (2058)
++.-... .-+..+|.+.........+|+++|+..++..|+++.+.||+.|+..++.++.++... .+..+--.|.+
T Consensus 770 eqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyE 848 (1172)
T KOG0213|consen 770 EQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYE 848 (1172)
T ss_pred hcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHH
Confidence 6543332 335667777777777889999999999999999999999999999999999988753 34555566777
Q ss_pred ccCCCChhHH----HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1545 GLTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1545 ~l~d~~~~vr----~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
.+....+.+= .|+.++...-=.... .|....++|.|...|+++...+.......+|.+|..-.+.-....|+ .+
T Consensus 849 ylgeeypEvLgsILgAikaI~nvigm~km-~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RI 926 (1172)
T KOG0213|consen 849 YLGEEYPEVLGSILGAIKAIVNVIGMTKM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RI 926 (1172)
T ss_pred hcCcccHHHHHHHHHHHHHHHHhcccccc-CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HH
Confidence 7776665542 244443321101112 24456789999999999999999999999999998522211223343 35
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
.-.|+.+|...+.++|..|...||.+++.+|++ +++..|++.|+.++.. .|.++..+++-+++.+|+- .++|.
T Consensus 927 cfeLlelLkahkK~iRRaa~nTfG~IakaIGPq---dVLatLlnnLkvqeRq-~RvcTtvaIaIVaE~c~pF---tVLPa 999 (1172)
T KOG0213|consen 927 CFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ---DVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCGPF---TVLPA 999 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH---HHHHHHHhcchHHHHH-hchhhhhhhhhhhhhcCch---hhhHH
Confidence 556777777888899999999999999999996 7888999999865544 7888999999999999885 78999
Q ss_pred HHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-c---hhch
Q 000143 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-S---LPLL 1776 (2058)
Q Consensus 1701 Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-~---l~~l 1776 (2058)
+++....++..|+++++.++.++.+..|+.-..|+..+.|.+..+|.|.+..-|..++.+++.+.-+.... + +-.+
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHL 1079 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHL 1079 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999887654322 2 2224
Q ss_pred HHhHhhhcCCCCHHHHHHHHHHHHH
Q 000143 1777 LPAVEDGIFNDNWRIRQSSVELLGD 1801 (2058)
Q Consensus 1777 lp~L~~~l~d~~~~vR~sav~ll~~ 1801 (2058)
+..+...+.+..+.+.++..+.+..
T Consensus 1080 LN~iWpNIle~sPhviqa~~e~~eg 1104 (1172)
T KOG0213|consen 1080 LNLIWPNILETSPHVIQAFDEAMEG 1104 (1172)
T ss_pred HHHhhhhhcCCChHHHHHHHHHHHH
Confidence 4444444555666665554444433
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.4e-25 Score=259.85 Aligned_cols=696 Identities=15% Similarity=0.152 Sum_probs=461.4
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHH------------------
Q 000143 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA------------------ 1117 (2058)
Q Consensus 1057 ~~l~~ll~~-l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a------------------ 1117 (2058)
.++.+|.++ .++||+++|..++.+|.+.. ..+|.+++..+.+.+ +.....+..|-.|
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~---~~dF~qf~~ll~qvl-~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQ---SGDFEQFISLLVQVL-CDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhc---cccHHHHHHHHHHHH-hccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 456666665 68999999999999998875 234545555444443 2233345555443
Q ss_pred -HHHHhhcCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchh
Q 000143 1118 -EDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 1193 (2058)
Q Consensus 1118 -~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~ 1193 (2058)
...|-....+.++.+ ...+..|.++.+..-..|++++++++.. .|. .|+.++..+... ... +.+...
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~n----vg~-----eqp~~~ 150 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRN----VGD-----EQPVSG 150 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHh----ccc-----cCchHh
Confidence 346776655555566 5567899999999999999999999863 343 566665555543 222 233456
Q ss_pred hHHHHHHHHHhhhhhCCCChH----HHHHHHHHhhc-cCCCHHHHHHHHHHHHH---HH-HhhC-ccchhhHHHHHHHHh
Q 000143 1194 RQGIALALHSAADVLRTKDLP----VIMTFLISRAL-ADTNADVRGRMLNAGIM---II-DKHG-RDNVSLLFPIFENYL 1263 (2058)
Q Consensus 1194 R~~~~~al~~l~~~~~~~~~~----~l~~~Li~~~L-~d~~~~VR~~al~a~~~---~i-~~~g-~~~~~~Ll~~l~~~L 1263 (2058)
+..+..++++++....++++. .++..++..++ ..+...||-.++.|+.. ++ +.+. .+..+.+|++..+.-
T Consensus 151 k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat 230 (858)
T COG5215 151 KCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230 (858)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc
Confidence 778888999998877775442 23333333443 45678899999888543 22 2333 235778888754442
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHh-HhccCCcchHHHH-HHHHhhhCCCCHHHHHHHHHhhHhhHhh----------c
Q 000143 1264 NKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHAVV-DKLLDVLNTPSEAVQRAVSSCLSPLMQS----------M 1331 (2058)
Q Consensus 1264 ~~~~~~~e~~~~vR~~av~~Lg~La~-~l~~~~p~i~~iv-~~Ll~~L~~~~~~V~~av~~~L~~l~~~----------~ 1331 (2058)
+ +.+. ++..+++.||.++.. ++.-..+|++..+ ..+..++.++++.|...+.+--+.+..- .
T Consensus 231 q----~~d~--e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 231 Q----GNDE--ELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred c----CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 2 2222 688999999999885 3333346676544 3445677888888765444322211110 0
Q ss_pred c-----------cchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH
Q 000143 1332 Q-----------DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2058)
Q Consensus 1332 ~-----------~~~~~~v~~Ll~~L~~------~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~ 1394 (2058)
+ ....+.+|.++..|.+ +++|.+..+|..||..+++..|...+. +++.++.+.+.++ +|+
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~w~ 381 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-SWA 381 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-hhh
Confidence 1 1235678888888876 347999999999999999999988886 6999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----h-HHhHHHHHHHhcc
Q 000143 1395 RREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VKLVLPSLLKGLE 1468 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg~-~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~-v~~llp~Ll~~L~ 1468 (2058)
.|+++++|||.+.++... ...+|+.+.+|.+...+.|+.-.|...+.+|+++++.++..- + +.......+.++.
T Consensus 382 nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 382 NREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred hHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Confidence 999999999999998664 467889999999999999999999999999999998776542 1 1233334444444
Q ss_pred CCChHHHHHHHHHHHHHHhhC-------hhhHhhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhcCchhH---H
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCA-------PQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEI---A 1536 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~-------p~~l~~~L~~Iip~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i---~ 1536 (2058)
| .++.-..++...-.++.+. +..+.++.+.|+..|++.- .+.+...|.++..+|+.+.....+... .
T Consensus 462 D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 462 D-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA 540 (858)
T ss_pred c-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 3 2333333444444444443 3446677788888887653 356678899999999999887664321 2
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+.....+.+ .+++..+++.- ...|... -.++...-+..+..+.+ ..+.++.+.
T Consensus 541 ~~~~~~~~kl-------~~~isv~~q~l--~~eD~~~---------------~~elqSN~~~vl~aiir--~~~~~ie~v 594 (858)
T COG5215 541 GFYDYTSKKL-------DECISVLGQIL--ATEDQLL---------------VEELQSNYIGVLEAIIR--TRRRDIEDV 594 (858)
T ss_pred HHHHHHHHHH-------HHHHHHhhhhh--hhHHHHH---------------HHHHHHHHHHHHHHHHH--hcCCCcccH
Confidence 2222222221 23443333200 0000000 01333444444444444 245677888
Q ss_pred HhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1617 IGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+++|..+.+.++..++ .+......+++.+...+|+. |.+.++|+|...|+ +.+..+-..+..-+|++++.+|.+
T Consensus 595 ~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 595 EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhhh
Confidence 88899999999987644 45677888999999988875 78899999999995 454445556666779999999987
Q ss_pred ---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc-CC-C-----HH----HHHH
Q 000143 1693 ---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DE-N-----ES----VRDA 1756 (2058)
Q Consensus 1693 ---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~-d~-~-----~~----VR~~ 1756 (2058)
|.+.+|..+.+.++++ +..+|.+++++||.++..+|..|.+|++.++-.+.+.-. ++ + .+ ++..
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 5688999999999886 788999999999999999999999999999887776532 11 1 12 3333
Q ss_pred HHHHHHHHHHHhcccchhchHHhHhhhc-------CCCC--HHHHHHHHHHHHHHH
Q 000143 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGI-------FNDN--WRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~l~~llp~L~~~l-------~d~~--~~vR~sav~ll~~Ll 1803 (2058)
...++-.|..... ..++.++|.+...+ .|++ ...-++++.++|++.
T Consensus 754 v~~ayVgI~~~~~-nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla 808 (858)
T COG5215 754 VNCAYVGIGDSSK-NRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLA 808 (858)
T ss_pred HHHHHHHhhhhhh-hhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHH
Confidence 3344444443332 22445666554322 3332 233356788888875
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-24 Score=264.60 Aligned_cols=732 Identities=17% Similarity=0.249 Sum_probs=488.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC---
Q 000143 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK--- 1211 (2058)
Q Consensus 1135 ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~--- 1211 (2058)
++...-++|+.+|..|..-|..+...+ ++..+..|-+.+. +. ..+...|.++++.|++-...-+++
T Consensus 6 ~le~tlSpD~n~~~~Ae~~l~~~~~~n---f~~F~~~Ls~vl~----n~----~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 6 LLEKTLSPDQNVRKRAEKQLEQAQSQN---FPQFLVLLSEVLA----ND----NSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHhcc---HHHHHHHHHHHHh----cc----CCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444466889999999998888887654 3333333332221 11 234468999998888754322211
Q ss_pred -----------ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCccchhhHHHHHHHHhcccCCChhHHHHHHHH
Q 000143 1212 -----------DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279 (2058)
Q Consensus 1212 -----------~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~ 1279 (2058)
....-++..+.+.|+.+.+..+..+..|...+... .+...|+++++.+.....+ +++. .+|++
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~-~~k~~ 149 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQAS-MVKES 149 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccch-HHHHH
Confidence 01222333345788988888888887775555442 3456789999888776443 2232 69999
Q ss_pred HHHHHHHHHhHhccCC--cchHHHHHHHHhhhC--CCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCC
Q 000143 1280 VVIFTGALAKHLAKDD--PKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSD 1350 (2058)
Q Consensus 1280 av~~Lg~La~~l~~~~--p~i~~iv~~Ll~~L~--~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~ 1350 (2058)
+++++|.+|+++++.. .....++-.++...+ .++..||.++.+||..-+...+.. -..++-........++
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP 229 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC
Confidence 9999999999887653 123445555555554 357789999988887655443322 2344444444455667
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchh---chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-------hcccch----h
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKY---GIAATLREGLADRNSAKRREGALLAFECLCEK-------LGRLFE----P 1416 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~---~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-------lg~~~~----p 1416 (2058)
|..+|.+|..||..+..-+ .+.+..+ .+...-...+.++ +..+.-.++..+..+|+. .++.++ |
T Consensus 230 d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p 307 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP 307 (859)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 8999999999999998743 1111111 1222223344544 666666666666666552 121111 1
Q ss_pred --------hHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1417 --------YVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1417 --------~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
-+..++|.|++.+. |+++.+..+|..||..++...+.+.++.++|.+-+.+++++|+.|.+++.+
T Consensus 308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 13368888887764 245789999999999999998888899999999999999999999999999
Q ss_pred HHHHHhh-ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-----hHHhHHHHHHhccCCCChhHHH
Q 000143 1482 LGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1482 Lg~la~~-~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+|.+..+ ++..+.+..++.+|.++..+.|+.-.||..+.|+++++++.+..+ +.+.+++
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~--------------- 452 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLS--------------- 452 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHH---------------
Confidence 9999977 456788999999999999999999999999999999999876522 2233333
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC-------CCchhhhHhhhhHHHHHhh
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-------PKDMIPYIGLLLPEVKKVL 1628 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~-------~~~l~pyl~~ll~~L~~~l 1628 (2058)
.+..+++|. +++-..+|.++.++++...+ .....||++.++..|+..-
T Consensus 453 ------------------------~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~t 507 (859)
T KOG1241|consen 453 ------------------------ALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVT 507 (859)
T ss_pred ------------------------HHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhc
Confidence 344444442 34445555555555532211 1123467888888888775
Q ss_pred C--C-CCHHHHHHHHHHHHHHHHhhcccCccc---hHHHHHh----hccc-CCChHH-------HhhHHHHHHHHHHHhc
Q 000143 1629 V--D-PIPEVRSVAARAIGSLIRGMGEENFPD---LVSWLLD----ALKS-DNSNVE-------RSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1629 ~--d-~~~~vR~~a~~aLg~l~~~lg~~~~~~---llp~L~~----~L~~-d~~~~~-------R~~aa~~L~~i~~~~g 1690 (2058)
+ | ...+.|.+|.+||+.+++...+++++- +.+..+. ++.+ -.+..+ ...-+..|..+.+.+|
T Consensus 508 dr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 508 DRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred cccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4 3 457899999999999999887764432 2222333 2221 011112 2234456777778887
Q ss_pred hh---HHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1691 TV---YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1691 ~~---~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
.+ ..+.+|..+++.++++ +..+.+.++.+++.++..+|.+|..|++.+.|.+..+|.+..+
T Consensus 588 ~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e--------------- 652 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE--------------- 652 (859)
T ss_pred ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH---------------
Confidence 75 4578899999988884 6678889999999999999999999999999999988865432
Q ss_pred HhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHH
Q 000143 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2058)
Q Consensus 1767 ~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL 1846 (2058)
+.|-.+++.++|++. +
T Consensus 653 ----------------------~qVc~~aVglVgdl~-------------------------------r----------- 668 (859)
T KOG1241|consen 653 ----------------------YQVCAAAVGLVGDLA-------------------------------R----------- 668 (859)
T ss_pred ----------------------HHHHHHHHHHHHHHH-------------------------------H-----------
Confidence 122334555666652 1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCcch---h
Q 000143 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGERV---L 1921 (2058)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~--~~~R~~A~~~Lg~L~~~lg~~~---l 1921 (2058)
.....+.+|...++..++.+|++++ .+++-....++|+++..+|.++ +
T Consensus 669 ---------------------------aL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl 721 (859)
T KOG1241|consen 669 ---------------------------ALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL 721 (859)
T ss_pred ---------------------------HHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 1222344677777888888888874 5678888999999999999774 6
Q ss_pred hchHHHHhhhcC---CC---C-----hhHHHHHHHHHHHHHHhhC----hhhhHhHHhhHHHHHHHHhcCCC--HHHHHH
Q 000143 1922 PSIIPILSRGLK---DP---S-----ASRRQGVCIGLSEVMASAG----KSQLLSFMDELIPTIRTALCDSI--LEVRES 1984 (2058)
Q Consensus 1922 ~~llp~L~~~l~---d~---~-----~~vR~~a~~aL~eii~~~~----~~~l~~~~~~ll~~L~~~L~D~d--~~VR~~ 1984 (2058)
..++|.+.+.-+ |+ + ...|.++..+..-++..++ ...+.||++.++..+...-.|++ ..+...
T Consensus 722 ~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~ 801 (859)
T KOG1241|consen 722 EMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAA 801 (859)
T ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 778888877642 21 1 2578888888777777765 24566899999999988766553 567788
Q ss_pred HHHHHHHHHHHhChhhH----H-HHHHH-HHHhcCC--CcchHHHHHHHHHHHh
Q 000143 1985 AGLAFSTLFKSAGMQAI----D-EIVPT-LLHALED--DQTSDTALDGLKQILS 2030 (2058)
Q Consensus 1985 Aa~a~~~l~~~~g~~~~----~-~ilp~-Ll~~L~~--~~~~~~al~aL~~i~~ 2030 (2058)
|+.-+|.++...|+..+ + ..+.. |-+..++ ...++.|-.+..++=+
T Consensus 802 a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr 855 (859)
T KOG1241|consen 802 ALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 88999999988885322 2 23333 3333333 2345666565555443
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=8.1e-22 Score=242.64 Aligned_cols=923 Identities=19% Similarity=0.201 Sum_probs=550.0
Q ss_pred hHHHHHHhhhhhc-ccCCCCCccchHhhHHHHHHHHcCCCCC--CchhhHHHHHHhhcCC----------------CCCC
Q 000143 960 CLFERIVNGLTVS-CKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDP----------------LLPL 1020 (2058)
Q Consensus 960 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~~ 1020 (2058)
..+.|++-++..+ +.|.++++. .+-++-++..++.+-|.. .++..-+..+--|... .-..
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai-~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAI-KCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhh-HHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 4567777777766 556776654 455667777777663321 1111111111111111 0133
Q ss_pred cHH---HHHHHHHHHHccc--cchHHHHHHHHHHHHhcCCh-------HHHHHHHhhh---cCCChhHHHHHHHhhhcCC
Q 000143 1021 PRL---RMISVLYHVLGVV--PSYQAAIGSALNELCLGLQP-------NEVASALHGV---YTKDVHVRMACLNAVKCIP 1085 (2058)
Q Consensus 1021 ~~~---~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~l~~ll~~l---~~~~~~vR~~al~~L~~~~ 1085 (2058)
||. ++++.|++=++.. +...++--+||+.+|+.... .-+..+.+-+ ...|.+.|..++|+++.+.
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 443 3444444444432 33445567899999987432 2334444434 5679999999999999988
Q ss_pred ccccCCC-CchhhhhhHhh-hhcCCC-------chHHHHHHHHHHhhcCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1086 AVSTRSL-PENIEVSTSLW-IAVHDP-------EKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALAT 1156 (2058)
Q Consensus 1086 ~~~~~~~-~~~~~~~~~~~-~a~~d~-------~~~~r~~a~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~ 1156 (2058)
..++.++ +...++..... ...+|| +++..+.+.+ ..+.+...+ -.+-+|-+|.||++||+++..
T Consensus 286 ~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed---~eDde~~de----YsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 286 RRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLED---EEDDEQDDE----YSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhc---cccchhccc----cccccchhHHHHHHHHHHHHH
Confidence 7765444 21112211110 112333 2222222221 111111122 234456689999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhC------------------------CCC
Q 000143 1157 ALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR------------------------TKD 1212 (2058)
Q Consensus 1157 ~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~------------------------~~~ 1212 (2058)
++..+++.++...+.+-.....+.+..+. .+|.-+..++..+....+ .++
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREE------nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREE------NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhh------hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 99888887777777655444333332211 234333333333322110 112
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHH-HHHH
Q 000143 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT-GALA 1288 (2058)
Q Consensus 1213 ~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~L-g~La 1288 (2058)
.+.+++.+ .+-+.++...-|...+..+.+++... +.++...++|-+...+.+..+. +..+..++.++ +.++
T Consensus 433 ~~~iVkai-~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss----s~~ki~~L~fl~~~L~ 507 (1233)
T KOG1824|consen 433 VPLIVKAI-QKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS----SNLKIDALVFLYSALI 507 (1233)
T ss_pred hHHHHHHH-HHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch----HHHHHHHHHHHHHHHh
Confidence 34455554 33455555556666666667776654 3467888999988888874322 24555554444 4444
Q ss_pred hHhcc-CCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-----------ccchHHHHHHHHHHHhcC-CCHHHH
Q 000143 1289 KHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-----------QDEAPTLVSRLLDQLMKS-DKYGER 1355 (2058)
Q Consensus 1289 ~~l~~-~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-----------~~~~~~~v~~Ll~~L~~~-~~~~vR 1355 (2058)
.|-++ -.|+++.+.+.+..+..+|-..+...+......+++.+ .+.+..++...++.+... .|..+|
T Consensus 508 s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 508 SHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred cCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 44333 24778888888999999987776554443334444433 112345555666666644 478999
Q ss_pred HHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCC
Q 000143 1356 RGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQV 1433 (2058)
Q Consensus 1356 ~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~ 1433 (2058)
..|..|++.++..+|+..-. -..+++.+.+.+++ .-+|-.|+.|+..|+...- -...|.+..++|.+...+....
T Consensus 588 eraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLGNELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998843211 12577777777775 4689999999998887533 2356888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1434 VAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
...|.++..++..++.+++.. .+..++..+...+.+.+.++-..|+..+..++...|.-+...-..+++.++.+++
T Consensus 665 r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 665 RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh
Confidence 899999999999999887653 3355666666666778888888899999999988888777777788888888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhc---Cchh--HHhHHHHHHhccCCCCh--hHHH-------HHHHHHhccccccCChhhHh
Q 000143 1510 DTHPKVQSAGQTALQQVGSVI---KNPE--IASLVPTLLMGLTDPND--HTKY-------SLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~---~~~~--i~~lvp~Ll~~l~d~~~--~vr~-------al~~L~~~~f~~~~~~~~l~ 1575 (2058)
. |..+..|..++-.+-..+ +++. +..++..+.....++.. -.+. |+.++.. .+ +... -+
T Consensus 745 S--pllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~-~~-~~~s---~s 817 (1233)
T KOG1824|consen 745 S--PLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTC-AC-PQKS---KS 817 (1233)
T ss_pred C--ccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHH-hc-cccc---hh
Confidence 6 556666666655443322 2232 22233332222222211 0011 1111111 00 0000 11
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1576 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1576 ~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.....+...++ ..+..+|..|.-.+|.++. ..+.. +.+.+-..+.+.++.|+.+|+.+|..|+|+++.+-
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr----~~~~s-~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---- 888 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGR----RKDLS-PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---- 888 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhcc----CCCCC-cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----
Confidence 11111111111 1222334444333443332 12211 12223334444455555555555555555554311
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHH-HhHHHhchhHHH
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-YLPRSLGVQFQN 1733 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~-~la~~~g~~f~p 1733 (2058)
++.++|.+++.+.+++. | +.-.+..|. .+...--..+.|
T Consensus 889 l~~yLpfil~qi~sqpk---~-------------------------------------QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 889 LPKYLPFILEQIESQPK---R-------------------------------------QYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred hHhHHHHHHHHHhcchH---h-------------------------------------HHHHHHHHHHHHHHhccchhhh
Confidence 23344444444432211 1 111111111 111112225678
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~ 1813 (2058)
|.+.+...+.+.+....+..|....++++.++-.-.+ .++|.|...+..+....|.+++..+.-.+
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe----sLlpkL~~~~~S~a~~~rs~vvsavKfsi---------- 994 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE----SLLPKLKLLLRSEASNTRSSVVSAVKFSI---------- 994 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH----HHHHHHHHHhcCCCcchhhhhhheeeeee----------
Confidence 9999999999999988889999999999998754433 38999999998888888888776554332
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 000143 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893 (2058)
Q Consensus 1814 ~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~ 1893 (2058)
.|+..- .+ . ...+.+..++....|++..||+.|+.++...++|.|.-+++.+|.++|.++..
T Consensus 995 -----sd~p~~-id---~---------~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 995 -----SDQPQP-ID---P---------LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred -----cCCCCc-cC---H---------HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 111000 00 0 11133445666778999999999999999999999999999999999998842
Q ss_pred ------------------hcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000143 1894 ------------------LASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2058)
Q Consensus 1894 ------------------L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~ 1954 (2058)
.-|+.-++|+.|.+|+..+...+-+. ...+++..+..++.|. .++|.-....+..+...
T Consensus 1057 TkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~l- 1134 (1233)
T KOG1824|consen 1057 TKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADL- 1134 (1233)
T ss_pred hhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhh-
Confidence 23456789999999999999887655 3678888999999886 67887665566655544
Q ss_pred ChhhhHhHHhhHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHH
Q 000143 1955 GKSQLLSFMDELIPTIRTALC------------DSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1955 ~~~~l~~~~~~ll~~L~~~L~------------D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
.|..+.+-+++++..|++.+. |...+..+.|.+++..+.+
T Consensus 1135 cPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1135 CPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred CcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 456677788999999998663 3345677788888888743
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=7.3e-22 Score=236.33 Aligned_cols=757 Identities=15% Similarity=0.176 Sum_probs=515.9
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHH-HhcccCCChhHHHHHHHHHHHHHHHHHhHhc
Q 000143 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLA 1292 (2058)
Q Consensus 1215 ~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~-~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~ 1292 (2058)
.+++.|+ -..+..+..|..++..+..-...+|. .-+++++|++.. .|++ .-|+..+..+..+-..++
T Consensus 364 ~i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD---------qerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED---------QERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc---------hhhhhHHHHHHHHHHhhc
Confidence 4566554 25677788899888877665556654 357888887643 3322 457778888888876666
Q ss_pred cC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000143 1293 KD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2058)
Q Consensus 1293 ~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~ 1371 (2058)
.. .||++.|+-..-..+-+++...+..--+.++.|++..+ +...+..+-..+ ++.++-+|...+.+.+.+++.+|.
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCc
Confidence 54 36666554333334456665555433445555554432 122222222222 233678999999999999999986
Q ss_pred cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1372 ~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l 1451 (2058)
. .++|+|.....++++|+.|+.++.+...|+.-+|...-||+..++..+-.++.|++..||..++.++..++...
T Consensus 510 p-----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 510 P-----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred H-----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 4 56899999999999999999999999999999999899999999999999999999999999999999999998
Q ss_pred hhhhH---HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1452 SAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1452 ~~~~v---~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
.++++ +.++.+|++++...--..-.+-+.++|.++.........|+ ..++-.+..-.+.++.+.++..+..+.+.+
T Consensus 585 ~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 585 TPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred CCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHh
Confidence 88765 78899998888654444444455666666654444444433 466777777888899999999999999998
Q ss_pred hhcC-ch-hH-HhHHHHHHhccCC-------CChh--HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1528 SVIK-NP-EI-ASLVPTLLMGLTD-------PNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1528 ~~~~-~~-~i-~~lvp~Ll~~l~d-------~~~~--vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
..-+ +| ++ .+++|.++...-. ++.. +..++....+ +. ...++.-+..-++|+++.-|++
T Consensus 665 ~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K------vG---~~~~v~R~v~~lkde~e~yrkm 735 (1172)
T KOG0213|consen 665 ATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK------VG---SDPIVSRVVLDLKDEPEQYRKM 735 (1172)
T ss_pred cccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH------hC---chHHHHHHhhhhccccHHHHHH
Confidence 8655 33 44 6788887764321 1111 0111111110 00 1223444444567888889999
Q ss_pred HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCCh
Q 000143 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSN 1672 (2058)
Q Consensus 1596 A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~ 1672 (2058)
++..+..+...++...--......++.++..+++....+.- .....||.++..+|.. |+++++...+..|++ ++.
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn-ksa 813 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN-KSA 813 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC-CCh
Confidence 98888887766654322233445678888888775544433 5678999999999873 889999999899984 566
Q ss_pred HHHhhHHHHHHHHH---HHhchhH-HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch-hHHHhHHHHHHHHHHhcc
Q 000143 1673 VERSGAAQGLSEVL---AALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~---~~~g~~~-l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~-~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.+|..++..++.++ ..+|.+. +..+--.+++.+....++|-..++.++..+....|- ...|-+..++|.+...|.
T Consensus 814 ~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 814 KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 69999888776554 4555553 334444567778888899999999999999888875 345677889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccc----hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCC
Q 000143 1748 DENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~lv~~~~~~~----l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~ 1823 (2058)
+..+.|.++...-++.|+..-.+.. .-.+.=.|.+.+...+-.+|.+++..+|-+..
T Consensus 894 nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak------------------- 954 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK------------------- 954 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------------------
Confidence 9999999999999998876644321 11134456666666677899999988887632
Q ss_pred cchHHHHHHHHHHhChhhHHHHHHHHHHhhc--CCCHHHH-HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1824 ~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~--D~~~~VR-~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
..|+. ++|..|+..+. |....|. ..|+.+.+..+ +. -..+|.++ ....-++..
T Consensus 955 ------------aIGPq---dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c---~p--FtVLPalm----neYrtPe~n 1010 (1172)
T KOG0213|consen 955 ------------AIGPQ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC---GP--FTVLPALM----NEYRTPEAN 1010 (1172)
T ss_pred ------------hcCHH---HHHHHHHhcchHHHHHhchhhhhhhhhhhhhc---Cc--hhhhHHHH----hhccCchhH
Confidence 22221 23333333221 1101111 11222322222 11 13445544 445778999
Q ss_pred HHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1901 RRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
+++-...+++-+++..|+. +.-.+.|.|.+.+.|+|+..|+.++..+..+.-++..-...+.+-++++.+..-+-++
T Consensus 1011 VQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~ 1090 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILET 1090 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCC
Confidence 9999999999999998865 4668899999999999999999999988888766554444455567778888777899
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhhhhccCC
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip~L~~~p 2048 (2058)
.|.|.++...|+..+...+|+. .++.+.++.|--|. .|+ .+.-+-..|-+.++..+-...|..-..|
T Consensus 1091 sPhviqa~~e~~eg~r~~Lg~~---~~~~Y~~QGLFHParkVR~-~yw~vyn~my~~~~dalv~~ypv~ed~p 1159 (1172)
T KOG0213|consen 1091 SPHVIQAFDEAMEGLRVALGPQ---AMLKYCLQGLFHPARKVRK-RYWTVYNSMYHGSQDALVACYPVEEDDP 1159 (1172)
T ss_pred ChHHHHHHHHHHHHHHHHhchH---HHHHHHHHhccCcHHHHHH-HHHHHHHhHhhcccchhhhccccCCCCc
Confidence 9999999999999999888864 46778888886553 333 3333444444443433333344444333
No 14
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.94 E-value=1e-22 Score=239.37 Aligned_cols=679 Identities=16% Similarity=0.208 Sum_probs=440.3
Q ss_pred CCcHHHHHHHHHHHHccccchHHHHHHHHHHHHhcCCh-HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCch
Q 000143 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQP-NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPEN 1095 (2058)
Q Consensus 1019 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~ 1095 (2058)
..-...+...|+.+.++.+..++.+.+.|.+.+....+ +-+..+|--+.+. +.+-|+-....++.+.-... ++ .
T Consensus 164 e~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~ld-dl--~ 240 (975)
T COG5181 164 EGDERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLD-DL--K 240 (975)
T ss_pred ccchHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcc-cc--c
Confidence 44556788899999999999999999999999999876 3445555444442 45556666665555431110 11 0
Q ss_pred hhhhhHhhh----hcCCCchHHHHHHHHHHhh----cCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHH
Q 000143 1096 IEVSTSLWI----AVHDPEKSVAEAAEDIWDR----YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQG 1167 (2058)
Q Consensus 1096 ~~~~~~~~~----a~~d~~~~~r~~a~~~w~~----~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~ 1167 (2058)
..|..+|.. ...|++.-.|...+++-.. .|+.. .+..+-+++++.++.||+..+++.+..+.... +.+
T Consensus 241 ~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~--~vs~mrpDi~~~deYVRnvt~ra~~vva~alg--v~~ 316 (975)
T COG5181 241 VPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGF--SVSSMRPDITSKDEYVRNVTGRAVGVVADALG--VEE 316 (975)
T ss_pred ccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccce--eeeeccCCcccccHHHHHHHHHHHHHHHHhhC--cHH
Confidence 112222221 2346666666666554433 33321 11445578899999999999999999886542 233
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHH---HHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000143 1168 SLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV---IMTFLISRALADTNADVRGRMLNAGIMII 1244 (2058)
Q Consensus 1168 ~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~---l~~~Li~~~L~d~~~~VR~~al~a~~~~i 1244 (2058)
++..|-.... +..+|+.|+++..+...++..++...+++ ++..+ .+++.|+...||-....+...+.
T Consensus 317 llpfl~a~c~---------SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci-~~~l~D~~~~vRi~tA~alS~la 386 (975)
T COG5181 317 LLPFLEALCG---------SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCI-SKLLKDRSRFVRIDTANALSYLA 386 (975)
T ss_pred HHHHHHHHhc---------CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHH-HHHhhccceeeeehhHhHHHHHH
Confidence 3443333321 13589999999999999999888766554 44443 57899999999988877776666
Q ss_pred HhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCCCCHHHHHH
Q 000143 1245 DKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQRA 1319 (2058)
Q Consensus 1245 ~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~~~~~V~~a 1319 (2058)
+..++ +.++.++..+++-..+. .+.+ -.+-+.+.|.+..-+++. ..+..+....++..+++|+++....
T Consensus 387 e~~~Pygie~fd~vl~pLw~g~~~h-rgk~-----l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~ 460 (975)
T COG5181 387 ELVGPYGIEQFDEVLCPLWEGASQH-RGKE-----LVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKD 460 (975)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhc-CCch-----HHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchh
Confidence 65554 45566666665554331 1111 111123333333222211 0124566667777788887665432
Q ss_pred HHHhhHhhHhhcccchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHH
Q 000143 1320 VSSCLSPLMQSMQDEAPT-LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398 (2058)
Q Consensus 1320 v~~~L~~l~~~~~~~~~~-~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~ 1398 (2058)
+...... ....+...+. +..++...+++. .|. |+.|. +.... ..
T Consensus 461 ~l~v~~~-C~~v~~~tp~~lr~~v~pefF~~-fw~-rr~A~-----------dr~~~---------------------k~ 505 (975)
T COG5181 461 LLVVERI-CDKVGTDTPWKLRDQVSPEFFSP-FWR-RRSAG-----------DRRSY---------------------KQ 505 (975)
T ss_pred HHHHHHH-HhccCCCCHHHHHHhhcHHhhch-HHH-hhhcc-----------ccccc---------------------ce
Confidence 2111100 0111111111 111111111111 121 11111 00000 00
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhccCCChH
Q 000143 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWR 1473 (2058)
Q Consensus 1399 al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~~~~~~ 1473 (2058)
+..+-..+++..|. | ++...+++.+.|+.+-.|..++.+..+++..++.-++ ..++..++.++++++-.
T Consensus 506 v~~ttvilAk~~g~---~---~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t 579 (975)
T COG5181 506 VVLTTVILAKMGGD---P---RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT 579 (975)
T ss_pred eehhHHHHHHHcCC---h---HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc
Confidence 11222334444442 2 4556777889999888999999998888888776443 45666777777655433
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhccCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~ 1549 (2058)
+.. .+..++.......-...+|++.|+..+++.|+.+.|.||..|+...+.++.++.+ ..+..+-..|.+.+...
T Consensus 580 ~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ 658 (975)
T COG5181 580 VGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED 658 (975)
T ss_pred ccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc
Confidence 211 0111222221122235689999999999999999999999999999999988873 34566667778888766
Q ss_pred ChhHH-HHHHHHHhccccccCC--hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH
Q 000143 1550 NDHTK-YSLDILLQTTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626 (2058)
Q Consensus 1550 ~~~vr-~al~~L~~~~f~~~~~--~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~ 1626 (2058)
.+.+- ..+.++..+..++..+ .|....++|.+...|+++...+.......+|.+|..-.+......|+ .+.-.|..
T Consensus 659 ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd 737 (975)
T COG5181 659 YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVD 737 (975)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHH
Confidence 65542 2333333222222221 24456788888888888888888888899999998522222233343 34556677
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhc
Q 000143 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706 (2058)
Q Consensus 1627 ~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~ 1706 (2058)
.+...+.++|..|...+|.+++++|++ +++..|++.|+.++.. .|.++..+++-+++.+|+- .++|.++....
T Consensus 738 ~Lks~nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq-~RvctsvaI~iVae~cgpf---sVlP~lm~dY~ 810 (975)
T COG5181 738 SLKSWNKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQ-QRVCTSVAISIVAEYCGPF---SVLPTLMSDYE 810 (975)
T ss_pred HHHHhhHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHH-hhhhhhhhhhhhHhhcCch---hhHHHHHhccc
Confidence 777888999999999999999999996 7888999999865544 7889999999999999985 78999999999
Q ss_pred cCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1707 ~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
.++..|+++++.++.++.+..|+.-..|+..+.|.+-.++.|.++.-|..++..++.++-+...
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998876543
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.5e-20 Score=242.55 Aligned_cols=616 Identities=18% Similarity=0.288 Sum_probs=426.7
Q ss_pred hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCc---chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHh
Q 000143 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP---KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329 (2058)
Q Consensus 1253 ~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p---~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~ 1329 (2058)
..+...+...+.++ ....|++.+.+|-.+..|+....+ ..++|...+...|.|.++.+|..+++-++ +++
T Consensus 817 ~~~~~~l~~~~~s~------nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlg-lVY 889 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSP------NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLG-LVY 889 (1702)
T ss_pred HHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCce-EEE
Confidence 34455555554442 237899999999999999875432 35677788889999999999997777654 344
Q ss_pred hcccc--hHHHHHHHHHHHhcCCC---------------------HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHH
Q 000143 1330 SMQDE--APTLVSRLLDQLMKSDK---------------------YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386 (2058)
Q Consensus 1330 ~~~~~--~~~~v~~Ll~~L~~~~~---------------------~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~ 1386 (2058)
.+++. -.++++.++++|..+.. .+-.....+-|..++..+|.. +++=...+.
T Consensus 890 elgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP-----dLVYKFM~L 964 (1702)
T KOG0915|consen 890 ELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP-----DLVYKFMQL 964 (1702)
T ss_pred ecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh-----HHHHHHHHH
Confidence 44332 46788899988876431 011233445666777777633 333334455
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh---hhhhHHhHHHHH
Q 000143 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL---SAQGVKLVLPSL 1463 (2058)
Q Consensus 1387 l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l---~~~~v~~llp~L 1463 (2058)
.++.-.|..|.||.+.|+.|++..|..++||+.+++|.+...--|++..|+.+....++.++..- -.+..+.++..|
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 55555899999999999999999999999999999999999999999999999998888887442 223347889999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1464 l~~L~~~~~~~R~~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
+..+.+..||+|.++|.+|..+..+.| +++...+|++...++....|-+..||++|-.+...+++.+
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~------------ 1112 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC------------ 1112 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 999999999999999999999999876 4588899999999999999999999999988887777642
Q ss_pred HhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhh
Q 000143 1543 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH-RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2058)
Q Consensus 1543 l~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~-~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll 1621 (2058)
-.+.|+.+.+. ....++.++|.+. .++-..-.++|+.+...+..|++. .++.+.||.+.++
T Consensus 1113 -vr~~d~~~~~~---------------~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1113 -VRICDVTNGAK---------------GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLI 1174 (1702)
T ss_pred -hhhcccCCccc---------------HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHH
Confidence 23334432221 0122344666654 344466689999999888888874 5578999999999
Q ss_pred HHHHHhhCCCCHHHHHH-HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1622 PEVKKVLVDPIPEVRSV-AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1622 ~~L~~~l~d~~~~vR~~-a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
|.|.++...-.+.|-.. +.++.+.=. + .+++++- +...-.-..+++..++.......++++.|.
T Consensus 1175 p~ll~~~s~lE~~vLnYls~r~~~~e~---------e----alDt~R~--s~aksspmmeTi~~ci~~iD~~vLeelip~ 1239 (1702)
T KOG0915|consen 1175 PLLLNAYSELEPQVLNYLSLRLINIET---------E----ALDTLRA--SAAKSSPMMETINKCINYIDISVLEELIPR 1239 (1702)
T ss_pred HHHHHHccccchHHHHHHHHhhhhhHH---------H----HHHHHHH--hhhcCCcHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999988766665332 222211111 1 1122221 000112345677788888777788999999
Q ss_pred HHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHh
Q 000143 1701 IIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2058)
Q Consensus 1701 Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~ 1779 (2058)
+.+.++.. .-..|.++...+.-+..-+|.+..||...++..++.++.|.++.+|..-..|++.++..-+++....++..
T Consensus 1240 l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1240 LTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred HHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99998876 66778899999999999999999999999999999999999999999999999998876665443333333
Q ss_pred Hh-hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCH
Q 000143 1780 VE-DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2058)
Q Consensus 1780 L~-~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~ 1858 (2058)
+. ..+.+. ...+..++..+.++... ..+.|. ...+.+++.++...++...
T Consensus 1320 ~l~~~l~k~-es~~siscatis~Ian~---------------------------s~e~Lk-n~asaILPLiFLa~~ee~K 1370 (1702)
T KOG0915|consen 1320 LLADLLGKD-ESLKSISCATISNIANY---------------------------SQEMLK-NYASAILPLIFLAMHEEEK 1370 (1702)
T ss_pred HHHHHhccC-CCccchhHHHHHHHHHh---------------------------hHHHHH-hhHHHHHHHHHHHHhHHHH
Confidence 32 222221 11123333333332110 011111 2334667777776655422
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcc----hhhchHHHHhhhcC
Q 000143 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLK 1933 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l~~llp~L~~~l~ 1933 (2058)
....---++|.++++....+++-+.+.++..+... .++..+..|..++..+..++...... +.-.+.+.+...++
T Consensus 1371 a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1371 ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLN 1450 (1702)
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhh
Confidence 22233346777777665566666777666666544 55566999999999998888765533 34456677777777
Q ss_pred CCChhHHHHHHHHHHHHHHhh
Q 000143 1934 DPSASRRQGVCIGLSEVMASA 1954 (2058)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~ 1954 (2058)
.+..+.++-...++.+.+..+
T Consensus 1451 GRiwdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1451 GRIWDGKEEILKALASAFEAG 1471 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHh
Confidence 665555555555555444444
No 16
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.90 E-value=1.6e-19 Score=212.94 Aligned_cols=725 Identities=15% Similarity=0.166 Sum_probs=461.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhCcc-chhhHHHHHHH-HhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchHHH
Q 000143 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAV 1301 (2058)
Q Consensus 1225 L~d~~~~VR~~al~a~~~~i~~~g~~-~~~~Ll~~l~~-~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~~i 1301 (2058)
..+.++..|...+..+..-.-.+|.. -++.++|++.. .|++ .-|+..+..+..+-..++.. .||.+.|
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD---------qerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED---------QERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh---------hhhHhHHHHHHHHHHhcccccccceeeE
Confidence 45667778888877766555555554 47788887644 3333 45788888888887666654 3666654
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHH
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~ 1381 (2058)
+-..-..+-+++..++..--+.+..++...+-. ..+..+-..+ .+.++-+|...+.+.+.+++.+|.+ .++|
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llp 319 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLP 319 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHH
Confidence 433333445566555443334445555443211 1111111111 2346779999999999999999843 6789
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH---Hh
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KL 1458 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v---~~ 1458 (2058)
+|.....+.++|+.|+.++.+...||.-+|...-+|+..++..+-.++.|++..||..++.++..+++...++++ +.
T Consensus 320 fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 320 FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 999999999999999999999999999999989999999999999999999999999999999999999888765 77
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhh-ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC--ch--
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--NP-- 1533 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~~-- 1533 (2058)
++-+|+++.....-..-.+-+.+.|.+... .|+...-+-...+..+...++.++.+.......... .|...+ .|
T Consensus 400 vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~-~C~~v~~~tp~~ 478 (975)
T COG5181 400 VLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVER-ICDKVGTDTPWK 478 (975)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHH-HHhccCCCCHHH
Confidence 888888877543333333334455544433 223333333455555566666555444433222222 222111 11
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH-hhcCC-CHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR-GLRER-SAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~-~L~d~-s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+..++.|.++... -.+ ...|+ +.. ++..+-..+++..++
T Consensus 479 lr~~v~pefF~~f----------------------------------w~rr~A~dr~~~k---~v~~ttvilAk~~g~-- 519 (975)
T COG5181 479 LRDQVSPEFFSPF----------------------------------WRRRSAGDRRSYK---QVVLTTVILAKMGGD-- 519 (975)
T ss_pred HHHhhcHHhhchH----------------------------------HHhhhcccccccc---eeehhHHHHHHHcCC--
Confidence 1133333332211 000 00111 111 111122233343344
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc-----chHHHHHhhcccCCChHHHhhHHHHHHHHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~-----~llp~L~~~L~~d~~~~~R~~aa~~L~~i~ 1686 (2058)
+.+...+++.+.|+....|..++.+...+...+|.--++ .++..++..++.+... + .....|++.+.
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~ 591 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVL 591 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEeccccee
Confidence 235666777788887778888888888888877754332 2444444444432221 1 12233445444
Q ss_pred HHh---chhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh-HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000143 1687 AAL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2058)
Q Consensus 1687 ~~~---g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~ 1762 (2058)
..+ |+.++..++..++..++++.+.+|+.++.+++.++..+... =...+..+=-.+...+..+.++|-...+.|+.
T Consensus 592 vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 592 VSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred eehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 333 45588899999999999999999999999999988876421 01234455566778899999999999999999
Q ss_pred HHHHHhccc----chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhC
Q 000143 1763 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2058)
Q Consensus 1763 ~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg 1838 (2058)
.|.....-. -+..++|.|...+.+.+.+|..+.+.++|.+... ..+-.+..+..
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~--------------~peyi~~rEWM-------- 729 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN--------------SPEYIGVREWM-------- 729 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc--------------CcccCCHHHHH--------
Confidence 887765533 3556899999999999999999999999887311 11111111111
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000143 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~ 1918 (2058)
++-=.|...+...+..+|.+|...++-+....+.. +++..++ ..|...+...|....-+++-+++.+|.
T Consensus 730 -----RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--dvL~~Ll----nnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 730 -----RICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--DVLDILL----NNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred -----HHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--HHHHHHH----hcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 11111222234556789999999988877655432 4444444 445667777888888888888887774
Q ss_pred chhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1919 ~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
- .++|.+..-...+..++.+|+..+++.+++..+.. ..+|+-.+.|.+..++.|.|+.-|+.|+..+..+.-+...
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 3 57888888888899999999999999999998764 5689999999999999999999999999999888754322
Q ss_pred hhHHHHHHHHHHhcC------CCcch---HHHHHHHHHHHhhcCCccchhhhhhhccCCCchhh
Q 000143 1999 QAIDEIVPTLLHALE------DDQTS---DTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVS 2053 (2058)
Q Consensus 1999 ~~~~~ilp~Ll~~L~------~~~~~---~~al~aL~~i~~~~~~~~lp~lip~L~~~p~~~~~ 2053 (2058)
.--++..=.|++.|- +|... +..+.++.+.+. +..+..++..-|++|.-+..+
T Consensus 875 tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg--~g~~m~Yv~qGLFHPs~~VRk 936 (975)
T COG5181 875 TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG--SGAMMKYVQQGLFHPSSTVRK 936 (975)
T ss_pred cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc--cHHHHHHHHHhccCchHHHHH
Confidence 111222223333321 12221 223444444443 345666777777776555443
No 17
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.89 E-value=8e-20 Score=234.87 Aligned_cols=555 Identities=22% Similarity=0.262 Sum_probs=415.3
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~ 1430 (2058)
+-.-|..+..-+..+.-..|.+.. ...++|++.+.. ++ +..++..+..-++.+....|. ..|...++|.+.....
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~ 169 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLAT 169 (759)
T ss_pred hhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhH
Confidence 455566666667777767777665 458899999988 44 566777666666666554431 2334456777778888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHH-HHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHh
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~-R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L 1508 (2058)
++...||+.+.+++..++..++.......+-+++..+...+|+. |..+|.+++......++ .+.. ++.|......
T Consensus 170 ~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~lc 246 (759)
T KOG0211|consen 170 VEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQSLC 246 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHhhc
Confidence 88999999999999999998888777555556666666668876 55678888887766663 3443 5556667788
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d 1587 (2058)
+|..+.||.+++.-++.++..+..... ..++|.+... ..|
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~~D 287 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------LRD 287 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------hhc
Confidence 999999999999999999987754322 3334444444 444
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-CccchHHHHHhhc
Q 000143 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDAL 1666 (2058)
Q Consensus 1588 ~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~~~llp~L~~~L 1666 (2058)
....||..|.....++...+.++. +....+.+.+.+...|+.|.+|......+..+...+|++ ..++..+.....+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLL 364 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHh
Confidence 444566666666666666543322 345567888999999999999999999999999999986 4456777777777
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchh-----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+ ++.++.|...+.-..++...+..+ ..+.++|.+...+.+.+..+|.+.......+...+|. ..-++.++|.
T Consensus 365 ~-~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~ 441 (759)
T KOG0211|consen 365 K-DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPL 441 (759)
T ss_pred c-chhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChh
Confidence 6 666778888887777777666522 2356789999999999999999888777777666663 3456678899
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccc----chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccC
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~ 1817 (2058)
.+..+.|+.+.||....+-+..+....... ..+..+|.+.+...+.+||+|.+.++.+..++
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la-------------- 507 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA-------------- 507 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH--------------
Confidence 999999999999998886554443333222 22448899998888889999999998888774
Q ss_pred CCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhCh--hhHHHhHHHHHHHHHHHh
Q 000143 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSL 1894 (2058)
Q Consensus 1818 ~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~--~~l~~~l~~L~~~l~~~L 1894 (2058)
..+|.+++++.+..++.. ..|....+|.+|...++.++..+| +.....+|.+ +...
T Consensus 508 -----------------~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~----L~~~ 566 (759)
T KOG0211|consen 508 -----------------LQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKL----LAMD 566 (759)
T ss_pred -----------------HhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHH----HHHh
Confidence 234455666666666655 678888999999999999998777 4444555544 4445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHH
Q 000143 1895 ASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1895 ~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~ 1973 (2058)
.++++-.|.+.+.++..++..+|..+ ...++|.+.++..|+.+++|.++++.|..++..+...... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 67789999999999999999999886 5789999999999999999999999999998888765443 5677777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1974 LCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1974 L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
..|++.+||..|..|++.+....
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHHH
Confidence 78999999999999999986543
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.1e-17 Score=231.28 Aligned_cols=686 Identities=16% Similarity=0.163 Sum_probs=461.0
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc--cc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-c----
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ--DE--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-I---- 1371 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~--~~--~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g-~---- 1371 (2058)
.++.|+..|..++..++..++.++..+...-. .. ....++.+++.|... +...|..|+.+|..+..... .
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 67889999998889999887777766653210 00 134567777776544 68899999999999886421 1
Q ss_pred cccchhchHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcccchhh-H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1372 SSLKKYGIAATLREGLADRN--SAKRREGALLAFECLCEKLGRLFEPY-V-IQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1372 ~~l~~~~il~~L~~~l~~~~--~~~~R~~al~al~~L~~~lg~~~~p~-l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
........+|.|...+++.. +...++.+..++..++..-+. +... + ...+|.+...+.++++.++..|..++..+
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en-~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARL 216 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11223477888888887642 223445556777777754332 2222 2 24789999999999999999999988877
Q ss_pred HHhhhh--hhH--HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhh---HhhhhhhHHHHHHHHhcCCC-------
Q 000143 1448 MSQLSA--QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ---LSQCLPKIVPKLTEVLTDTH------- 1512 (2058)
Q Consensus 1448 ~~~l~~--~~v--~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~---l~~~L~~Iip~L~~~L~D~~------- 1512 (2058)
+...+. ..+ ...+|.+++.+.+ .+..+|..|+.+|+.++.+.++. +.. ...+|.|++.+..++
T Consensus 217 ass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~ 294 (2102)
T PLN03200 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD--AGGIPALINATVAPSKEFMQGE 294 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH--CCCHHHHHHHHhCcchhhhccc
Confidence 755332 222 4578999999975 45689999999999999876543 222 256788888776544
Q ss_pred --HHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH--HHHHHHHhc-cccccCChhh--H--hhHHHHHHH
Q 000143 1513 --PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK--YSLDILLQT-TFVNTVDAPS--L--ALLVPIVHR 1583 (2058)
Q Consensus 1513 --~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr--~al~~L~~~-~f~~~~~~~~--l--~~llp~L~~ 1583 (2058)
...++.|.|+|+.++... ..++|.|-+.+..+..... .++.++... ......+... + ..+.+.|.+
T Consensus 295 ~~~~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~ 369 (2102)
T PLN03200 295 FAQALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVK 369 (2102)
T ss_pred cchHHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHH
Confidence 345899999999998754 4567777666654432221 122222110 0000000000 0 134567777
Q ss_pred hhcCCCHH-HHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----Ccc
Q 000143 1584 GLRERSAE-TKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFP 1656 (2058)
Q Consensus 1584 ~L~d~s~~-vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~ 1656 (2058)
.++.+++. ++..+..++..+. +.+ .+.. +-...++.|..++...+.+++..++.++..++..-.+. .-.
T Consensus 370 Llr~k~p~~vqe~V~eALasl~---gN~-~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 370 LLKPRDTKLVQERIIEALASLY---GNA-YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HhCCCCCchhHHHHHHHHHHhc---CCh-HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 88766544 3555555543322 221 0000 11245677888888888999999999999998542211 123
Q ss_pred chHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1657 ~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
..+|.|++.|.++. ...+..++..++.+..+...... ...+|.+.+.+.+++..+|+.+++++++++.. ..+..
T Consensus 446 ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir 523 (2102)
T PLN03200 446 EGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIR 523 (2102)
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHH
Confidence 57899999998654 45788888888888653322211 45789999999999999999999999999873 43444
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCc
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~ 1810 (2058)
..+ ..++|+++..|.+.+..+++.+++++..+....... .++.+...+..++..++..+++.++.++...
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~---- 595 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVA---- 595 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhc----
Confidence 445 258999999999999999999999999887654333 3466777777777888888888888875211
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHH-hHHHHHHH
Q 000143 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNT 1889 (2058)
Q Consensus 1811 ~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~-~l~~L~~~ 1889 (2058)
+.++ . ...... .+..++.|...+...+..+++.|..++..++.+.+..... +....++.
T Consensus 596 --------~~~d-~-----~~~g~~------~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 596 --------SLED-L-----VREGSA------ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred --------chhH-H-----HHHhhh------ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 0000 0 000000 0123455555555667888999999998888765543322 23345666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-
Q 000143 1890 LISSLASSSSERRQVAGRALGELVRKLGER----V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM- 1963 (2058)
Q Consensus 1890 l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~- 1963 (2058)
++..+.+.+.+++..++.+|+.+.....++ + -...+|.|.+.+++.+.+++..++.+|..++...... ....
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~~ 733 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEALA 733 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHHh
Confidence 677789999999999999999999743322 1 2457889999999999999999999999887654221 2222
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh-------hHHHHHHHHHHhcCCCc--chHH--HHHHHHHHHhh
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-------AIDEIVPTLLHALEDDQ--TSDT--ALDGLKQILSV 2031 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~-------~~~~ilp~Ll~~L~~~~--~~~~--al~aL~~i~~~ 2031 (2058)
...++.|.+.+.+.++.+|++|+.++..+++..... ....++.+|+..|...+ ...+ ++.+|..+.+.
T Consensus 734 ~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 566899999999999999999999999999765422 22357788999998644 3344 88888888875
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=1.7e-17 Score=229.69 Aligned_cols=721 Identities=13% Similarity=0.106 Sum_probs=485.1
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc--hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc
Q 000143 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK--VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332 (2058)
Q Consensus 1255 Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~--i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~ 1332 (2058)
.+|.+...|... ...+|+.++..|..++.+- ..... ....++.|+..|++.+.+.++.++.+|..+.....
T Consensus 59 aIP~LV~lL~sg------~~~vk~nAaaaL~nLS~~e-~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~ 131 (2102)
T PLN03200 59 AMPLLVSLLRSG------TLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGL 131 (2102)
T ss_pred cHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCH-HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcc
Confidence 456666666541 1257888888888888641 11100 13467788899999899999999999888765321
Q ss_pred -cc-------hHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCcc--ccchhchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1333 -DE-------APTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1333 -~~-------~~~~v~~Ll~~L~~~~--~~~vR~~Aa~~L~~l~~~~g~~--~l~~~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
+. ....++.|+..+.... +..++..+..+|..+...-+.. .+-....+|.+...+.+. ++..+..|.
T Consensus 132 ~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa 210 (2102)
T PLN03200 132 SDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 11 1345777777776543 2334555667777777644322 112346888999999875 788888888
Q ss_pred HHHHHHHHHhcccchhhH-HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh--
Q 000143 1401 LAFECLCEKLGRLFEPYV-IQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-- 1472 (2058)
Q Consensus 1401 ~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D-~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-- 1472 (2058)
.++..++...++.....+ ...+|.++..+++ +++.+|+.|.+++..++...+.. .+ ...+|.+++.+..++.
T Consensus 211 ~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~ 290 (2102)
T PLN03200 211 SLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF 290 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhh
Confidence 888777755332111112 2468999999965 56799999999999998653332 12 3467888887764432
Q ss_pred -------HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCchh--H-----Hh
Q 000143 1473 -------RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPE--I-----AS 1537 (2058)
Q Consensus 1473 -------~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~--i-----~~ 1537 (2058)
..+..|+.+|++++.+. +.++|.|.+.++.. +..+...+++++..+...+.++. . ..
T Consensus 291 ~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~ 362 (2102)
T PLN03200 291 MQGEFAQALQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTV 362 (2102)
T ss_pred hccccchHHHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccc
Confidence 34788999999999764 45677777776543 45556677888888866555321 1 23
Q ss_pred HHHHHHhccCCCChhH-----HHHHHHHHh-ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1538 LVPTLLMGLTDPNDHT-----KYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~v-----r~al~~L~~-~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+.+.|.+.+..+++.. .+|+..+.. ......+ ......+.|...+...+.+++..++..+.+++.. + .
T Consensus 363 v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L---~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~--~-~ 436 (2102)
T PLN03200 363 IEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL---NHAEAKKVLVGLITMATADVQEELIRALSSLCCG--K-G 436 (2102)
T ss_pred cHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH---HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC--C-H
Confidence 4577888887665432 244433221 0000000 0122456677777777889999999999998852 2 1
Q ss_pred chhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1612 DMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1612 ~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
+....+ ...+|.|...+.+++..++..++.+++.++....+. .-...+|.|.+.|.+. +...+..++++|+.+
T Consensus 437 e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NL 515 (2102)
T PLN03200 437 GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNL 515 (2102)
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 222211 246899999999999999999999999998633222 1246899999999854 556899999999998
Q ss_pred HHHhchh---HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHH
Q 000143 1686 LAALGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGA 1760 (2058)
Q Consensus 1686 ~~~~g~~---~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~a 1760 (2058)
+.. ..+ .+ ...+|.+++.+++.++..|+.+++++.++...... ..++++...+..+++.++..++++
T Consensus 516 a~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~LLlsdd~~~~~~aL~v 587 (2102)
T PLN03200 516 CCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-------ATISQLTALLLGDLPESKVHVLDV 587 (2102)
T ss_pred hCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-------hHHHHHHHHhcCCChhHHHHHHHH
Confidence 753 221 12 35788999999999999999999999998664322 244777788888888899999999
Q ss_pred HHHHHHHhcccc-------hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHH
Q 000143 1761 GHVLVEHYATTS-------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2058)
Q Consensus 1761 l~~lv~~~~~~~-------l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l 1833 (2058)
++.++....... ....+|.|.+.+.+.+.+++..|+..+..+... . ......+
T Consensus 588 LgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-------------~-------~d~~~av 647 (2102)
T PLN03200 588 LGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS-------------R-------QDLCESL 647 (2102)
T ss_pred HHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-------------C-------hHHHHHH
Confidence 888765333221 124789999999999999999999999887410 0 0011111
Q ss_pred HHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-HHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LKEIMP-VLMNTLISSLASSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1834 ~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~-l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~ 1911 (2058)
+ ....+..+...+......+++.+...+..+....... ...++. ..++.+++.+.+.+.+++..|+.+|+.
T Consensus 648 v-------~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 648 A-------TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720 (2102)
T ss_pred H-------HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 1 1123455555566667778888888888887533222 122222 356667777899999999999999999
Q ss_pred HHHHhCcc--h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-hHhHH--hhHHHHHHHHhcCCCHHHHHH-
Q 000143 1912 LVRKLGER--V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFM--DELIPTIRTALCDSILEVRES- 1984 (2058)
Q Consensus 1912 L~~~lg~~--~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~-l~~~~--~~ll~~L~~~L~D~d~~VR~~- 1984 (2058)
+++..... + -...+|.|.+.+.+.++..|.+++.+|..+..+.+.++ +..+. ...+..|...|...|.+.-..
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 99864322 1 24678999999999999999999999999998877554 43443 345677778887666666665
Q ss_pred -HHHHHHHHHHHhCh-----hhH------HHHHHHHHHhcCC--CcchHHHHHHHHHHHhhcC
Q 000143 1985 -AGLAFSTLFKSAGM-----QAI------DEIVPTLLHALED--DQTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1985 -Aa~a~~~l~~~~g~-----~~~------~~ilp~Ll~~L~~--~~~~~~al~aL~~i~~~~~ 2033 (2058)
|..+++.+.+..+. +.. ..-+.+|.++|.. |...+.|++-|..+|+.+|
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 89999999875321 111 1345566666643 4567889999999888764
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-18 Score=209.84 Aligned_cols=450 Identities=22% Similarity=0.333 Sum_probs=332.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCC
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~ 1588 (2058)
.|+++.||..-..+.......-+++....+.|...+.++.. .
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~--------------------------------------~ 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL--------------------------------------H 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc--------------------------------------h
Confidence 67777888777776666554444444444444444443321 1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
+..+|....-..|.++..+ ...|..+ ..++..+.+.+..|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 2233433333344444432 2233333 35788888889999999999999999998876655544566676767776
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHH--HHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHh
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~ 1745 (2058)
......|.+++.+++.+..+.|.+.+ ..++..+.....+. +...|++++.++......+|..|.||+-.++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 45566899999999999999888755 45777888888776 4455667888888899999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcc
Q 000143 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2058)
Q Consensus 1746 L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~ 1825 (2058)
+.|....||..+..+.+.++..+...+++.++|.+...+.+..|+...++++++|.+.++..
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999988888899999999999998865421
Q ss_pred hHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCCCHHHHHH
Q 000143 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQV 1904 (2058)
Q Consensus 1826 ~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~~~~~R~~ 1904 (2058)
..+. .+...+++.+...+.|+...||+++..++..++.... ..+..+ .|.++.+++++...+..
T Consensus 287 -----~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~----ip~Lld~l~dp~~~~~e- 351 (569)
T KOG1242|consen 287 -----KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI----IPTLLDALADPSCYTPE- 351 (569)
T ss_pred -----HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH----HHHHHHHhcCcccchHH-
Confidence 1111 1233566667777889999999999998887765322 234444 45556667888744322
Q ss_pred HHHHHH--HHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhhHhHHhhHHHHHHHHhcCCCHHH
Q 000143 1905 AGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEV 1981 (2058)
Q Consensus 1905 A~~~Lg--~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~~~~ll~~L~~~L~D~d~~V 1981 (2058)
+...|+ .++..+.+..+.-++|.|.+++++++...+..++..++.+..-. .+..+.+|++.++|.+...+.|+.|+|
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 222222 22333334456788999999999998887777777788777666 566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhhcC
Q 000143 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1982 R~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~al~aL~~i~~~~~ 2033 (2058)
|..|+.|+|.+.+..|....+..+|.+.+.+.++. .+..+..+|.++++...
T Consensus 432 R~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~ 486 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG 486 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc
Confidence 99999999999999999888999999999997643 35556666666665443
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=2.7e-15 Score=176.69 Aligned_cols=610 Identities=14% Similarity=0.159 Sum_probs=378.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC-------
Q 000143 1139 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK------- 1211 (2058)
Q Consensus 1139 l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~------- 1211 (2058)
+-++|+.+|..+..-|-.+...+ |...+.-+.+.+-. .....+.|-.++.+|++-...-++.
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~d---F~qf~~ll~qvl~d--------~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGD---FEQFISLLVQVLCD--------LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred cCCCCCCccccHHHHHHHhcccc---HHHHHHHHHHHHhc--------cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 45678888888776666665433 33322222222111 1233468888888888754322211
Q ss_pred -------ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 000143 1212 -------DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283 (2058)
Q Consensus 1212 -------~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~ 1283 (2058)
....-++-+..++|+.+++..-..+.....++.+- .+...|+.+|..+.....+ +++ ..++..++..
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~----eqp-~~~k~~sl~~ 157 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGD----EQP-VSGKCESLGI 157 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccc----cCc-hHhHHHHHHH
Confidence 01122333334678888887776666554444432 2334688888776665332 222 3566666666
Q ss_pred HHHHHhHhccCCcc-h----HHH-HHHHHhhhCC-CCHHHHHHHHHhhHhhHhhc-----ccchHHHHHHHHHHHhcCCC
Q 000143 1284 TGALAKHLAKDDPK-V----HAV-VDKLLDVLNT-PSEAVQRAVSSCLSPLMQSM-----QDEAPTLVSRLLDQLMKSDK 1351 (2058)
Q Consensus 1284 Lg~La~~l~~~~p~-i----~~i-v~~Ll~~L~~-~~~~V~~av~~~L~~l~~~~-----~~~~~~~v~~Ll~~L~~~~~ 1351 (2058)
+|..|+ +.+|. + ..+ +......+++ ++..||.++.+||..-...+ .+.-..++-.......++++
T Consensus 158 ~gy~ce---s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 158 CGYHCE---SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred HHHHhh---ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 666554 44441 1 112 2222334443 56788888888887622222 12234455555555566778
Q ss_pred HHHHHHHHHHHHHHHhhhCccccc---hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cccc-hh----------
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLK---KYGIAATLREGLADRNSAKRREGALLAFECLCEKL-GRLF-EP---------- 1416 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~---~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l-g~~~-~p---------- 1416 (2058)
..+..+|..|+..+..-. .+.++ +..+.....+.+.+. +.++.-.++..+.++|+.- .-.+ ..
T Consensus 235 ~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~ 312 (858)
T COG5215 235 EELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH 312 (858)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence 888988989998887532 11111 001112222334455 6667777777777777641 1001 01
Q ss_pred -----hHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000143 1417 -----YVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1417 -----~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~ 1484 (2058)
-+..++|.+++.+. ++++.+..+|..|+..++...+...++.++..+.+.+++++|+.|.+++.++|.
T Consensus 313 ~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 313 GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 14568899888764 246789999999999999888888888899999999999999999999999999
Q ss_pred HHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---h--hHHhHHHHHHhccCCCChhHHH---
Q 000143 1485 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---P--EIASLVPTLLMGLTDPNDHTKY--- 1555 (2058)
Q Consensus 1485 la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~--~i~~lvp~Ll~~l~d~~~~vr~--- 1555 (2058)
+..+. ...+.++.++.+|.+....+|+.-.|+..++||++++++.+.. | ++...+...+..+.|-....-.
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 98774 3457889999999999999999999999999999999987652 2 3333344444444443221111
Q ss_pred HHHHHHh-----ccccccCChhhHhhHHHHHHHh--hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh----HhhhhHHH
Q 000143 1556 SLDILLQ-----TTFVNTVDAPSLALLVPIVHRG--LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY----IGLLLPEV 1624 (2058)
Q Consensus 1556 al~~L~~-----~~f~~~~~~~~l~~llp~L~~~--L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py----l~~ll~~L 1624 (2058)
....+.. +..+...-.+....++..|..+ +.+.....|..+..++|.|..... +.+.+. ++-++..+
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~--d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP--DAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHH
Confidence 1111111 1111111112122233333322 123445678888888998877532 233322 22222222
Q ss_pred HHhh-------C--C--CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1625 KKVL-------V--D--PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1625 ~~~l-------~--d--~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
-+.+ . | ...++...-...+.++....+.+ .-++++..+++.|.+.+....-.....+++.+...+|
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence 2221 1 1 12345666666777777777764 2345888888888765333333445667777777777
Q ss_pred hh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHH
Q 000143 1691 TV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1691 ~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~--~~VR~~a~~al~~lv 1765 (2058)
.. |.+.+.|.+...++..+..|-..++.+.|.++..+|.+|.+|...++..+.+.+..+. .+++-..+..++.|.
T Consensus 631 e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 631 ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 64 6788999999999888999999999999999999999999999999999999998764 467778888888887
Q ss_pred HHhccc
Q 000143 1766 EHYATT 1771 (2058)
Q Consensus 1766 ~~~~~~ 1771 (2058)
...+..
T Consensus 711 laiga~ 716 (858)
T COG5215 711 LAIGAN 716 (858)
T ss_pred HHHhhh
Confidence 766654
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.78 E-value=2.8e-16 Score=202.53 Aligned_cols=530 Identities=18% Similarity=0.217 Sum_probs=391.7
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhC-CCCHHHHHHHHHhhHhhHhh
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQS 1330 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~-~~~~~V~~av~~~L~~l~~~ 1330 (2058)
...++|.+.+.+ . ..+.+...+..-+|.+..+.. .|++..++...++.+. +....|+..+.+++......
T Consensus 119 r~~lipf~~e~~-~------~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAE-D------DEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhc-c------chhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 567889888875 2 234678888888888776432 2444444444444443 33456788888887776665
Q ss_pred ccc-chHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000143 1331 MQD-EAPTLVSRLLDQLMKSDKYGE-RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2058)
Q Consensus 1331 ~~~-~~~~~v~~Ll~~L~~~~~~~v-R~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~ 1408 (2058)
..+ ...+.+-.++..+..+ +|-. |..++..++.......++.++ ..+.+...+..+++ ++.+|.++..-++.++.
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~ 266 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAK 266 (759)
T ss_pred cChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHH
Confidence 533 2346666677777666 3444 444444444444444333332 35566666666666 89999999888888888
Q ss_pred HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-hH-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
..+. +.-...++|.+.....|+...||.+|.+++..+...+... .+ +.+.+.+++..+|.+|++|.........+.
T Consensus 267 ~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 267 VLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 7775 3334567888889999999999999999999999888776 44 788999999999999999998877777766
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hh--HHhHHHHHHhccCCCChhHHHHHHHHH
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~lvp~Ll~~l~d~~~~vr~al~~L~ 1561 (2058)
...+.+ ..-+..++.....++|...++|.++..-...++..... +. .+.++|.+.....|.+.++|.+.....
T Consensus 345 ~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 345 SAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 554442 23346778888899999999999999999999887763 22 256789999999999999986554332
Q ss_pred h-ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHH
Q 000143 1562 Q-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2058)
Q Consensus 1562 ~-~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~ 1640 (2058)
. ....-. .......+.|.+...++|..+.||......+..+-. +.+.....-+.+.++|.+..+..|..|++|.+..
T Consensus 423 ~~~~p~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 423 TGLSPILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred cccCccCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 1 100001 123456688999999999999999886655544333 3444455667788999999999999999999999
Q ss_pred HHHHHHHHhhcccCccchHH-HHHhhcccCCChHHHhhHHHHHHHHHHHhchh-HHHHhhHHHHHhhccCChhHHHHHHH
Q 000143 1641 RAIGSLIRGMGEENFPDLVS-WLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~~~~~llp-~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~Ll~~l~~~~~~vR~~al~ 1718 (2058)
+.+..++...|..++++.+. .++..+. +.....|.+++..+..++..+|.+ ....++|.++....++++.+|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 99999999998776654433 3333333 555679999999999999999966 45788899998888889999999999
Q ss_pred HHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchh-chHHhHhhhcCCCCHHHHHHHHH
Q 000143 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVE 1797 (2058)
Q Consensus 1719 ~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ 1797 (2058)
++..++..+|.++ +...++|.+..+..|++++||-++++.+..++........+ .++|.++....|.+..+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999987 78889999999999999999999999999998887766554 47788777777776666666666
Q ss_pred HHHHH
Q 000143 1798 LLGDL 1802 (2058)
Q Consensus 1798 ll~~L 1802 (2058)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 66655
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.8e-13 Score=178.26 Aligned_cols=461 Identities=17% Similarity=0.233 Sum_probs=319.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
..+...+.+++.+.++..|...|-.+-.+...++......-..+.+...+...+.|.+.-++..|.+.+|.+.+--+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34566677788889999999888777777666665566666778888999999999999999999999998776444444
Q ss_pred ccchHHHHHhhcccCCChHH---------------------HhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-ChhH
Q 000143 1655 FPDLVSWLLDALKSDNSNVE---------------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASV 1712 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~---------------------R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~v 1712 (2058)
-..++..|+++|........ ...+-+-|..++..+|+. +++-.+++..++. .|.-
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP---dLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP---DLVYKFMQLANHNATWNS 973 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh---HHHHHHHHHhhhhchhhc
Confidence 45678888887753211100 011222344444455543 4444555555554 7899
Q ss_pred HHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hcccchhchHHhHhhhcCCCCH
Q 000143 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNW 1789 (2058)
Q Consensus 1713 R~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~---~~~~~l~~llp~L~~~l~d~~~ 1789 (2058)
|.++...|+.++...|+..+||+.+++|.+...=-|++..|+.+.....+.++.. .-+.+...++..|...+.+..|
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEW 1053 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999999999999999999999999888888777643 1223455688888888999999
Q ss_pred HHHHHHHHHHHHHHHHhhCC--ccc------ccccCCCCCCCcchHHHHHHHHHHh---------------ChhhHHHHH
Q 000143 1790 RIRQSSVELLGDLLFKVAGT--SGK------ALLEGGSDDEGASTEAHGRAIIEVL---------------GRDKRNEVL 1846 (2058)
Q Consensus 1790 ~vR~sav~ll~~Ll~~~~g~--~~k------~~~~~~~e~~~~~~e~~~~~l~~~L---------------g~~~~~~vL 1846 (2058)
|||.+++-.+.+|+..-... ..+ +.+...+ |-..++..++....+.+ |.+..+.+|
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD-DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD-DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 99999999999997421000 000 0000000 00001111111111111 233444555
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCH-------------------HHHHHH-
Q 000143 1847 AALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS-------------------ERRQVA- 1905 (2058)
Q Consensus 1847 ~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~-------------------~~R~~A- 1905 (2058)
+.+... .......||..++.++-.++...|..+++++|.+++.++.....-++ ..|..+
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 555432 33567899999999999999999999999999999998876543221 234333
Q ss_pred -----HHHHHHHHHHhCcchhhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1906 -----GRALGELVRKLGERVLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1906 -----~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.++++.++......++.+++|.+.+.+... .-..|.+++..+.-+...++.+ ..||.+.++..+...+.|.++
T Consensus 1213 ksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~e-mtP~sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSE-MTPYSGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred cCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccc-cCcchhHHHHHHhhccccccH
Confidence 357777777777777889999998887655 3567888888777777888765 689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCC--cchHHHHH-------HHHHHHhhcCCccchhh
Q 000143 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALD-------GLKQILSVRTTAVLPHI 2040 (2058)
Q Consensus 1980 ~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~--~~~~~al~-------aL~~i~~~~~~~~lp~l 2040 (2058)
.||.+.+.|+|.+.+...+......+..++..+-.+ ..+..++. --.+++..+.+.++|..
T Consensus 1292 sv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 999999999999998876655555555555554321 11122222 22566677777888854
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=9.5e-12 Score=148.25 Aligned_cols=424 Identities=17% Similarity=0.225 Sum_probs=295.5
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
+.+.++|.--+-|++|+--+..+++.+-.. .++.++..+.. ...+.+-..|++++..+.+++-+.+..-.+|+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345667776777888888888877765442 35677775544 4456666677788888888887766665569999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHH---HHHHhccccccCChhh
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSL---DILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al---~~L~~~~f~~~~~~~~ 1573 (2058)
++|.++.+++|++.+||.-||+++-.++++.+. .++..+...+.+...|++..+|.+. +-+.+..-......-+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999999999998875 3678999999999999998887443 3333311111111345
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
++.++|.+...+-..++.+|......+..+-.. .+-++..|++.++++|.+.+.|+..+||..+-.+++.+...+..+
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 778999999988888999999877666665542 345778899999999999999999999999888888776554322
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+... ..++.++.+...+.++++.++..++.-+..+....|.++.+
T Consensus 243 ----------------P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 243 ----------------PSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred ----------------cccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 1110 11233344444555666666666666666677778888899
Q ss_pred hHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhccc----chh--chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1734 YLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~-~VR~~a~~al~~lv~~~~~~----~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~ 1806 (2058)
|++.++..++.++.+.++ .+++.+...-+.+...++.. .++ .++..+.+.+.++....|.+++..+..+..+.
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 999999999999998776 47766655444444433322 233 58888889999999999999999998875433
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHH
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPV 1885 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~ 1885 (2058)
.|.. . -+.+.+...+...++|.+..|-.-++.++..++.... ..+.+++..
T Consensus 368 p~ql-----------------------~-----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~s 419 (675)
T KOG0212|consen 368 PGQL-----------------------L-----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLS 419 (675)
T ss_pred cchh-----------------------h-----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 2211 0 1123455666777888888888888888888885322 255566666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1886 L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
++++.. .+.--.+.-+.-.+-.+|..+.
T Consensus 420 LL~~f~----e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 420 LLEMFK----EDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred HHHHHh----hhhHHHHhhhhHHHHHHHHHhC
Confidence 665543 2333333334444455555554
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.9e-11 Score=145.66 Aligned_cols=421 Identities=16% Similarity=0.187 Sum_probs=299.4
Q ss_pred hhhCCCCHHHHHHHHHhhHhhHhhc-c----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccch-hchH
Q 000143 1307 DVLNTPSEAVQRAVSSCLSPLMQSM-Q----DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIA 1380 (2058)
Q Consensus 1307 ~~L~~~~~~V~~av~~~L~~l~~~~-~----~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~-~~il 1380 (2058)
..|.|..-+-|++++--+..+++.+ . ++....+..+......+.+...|+|+..|++...-++|.+.... ..++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 3444444445555554455555433 1 12345555566666666667778899999999999999887541 1566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----hh
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QG 1455 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----~~ 1455 (2058)
+-+...+.|. +.++|--|+..+-.++......+-+|...+...+.+...|.+..||..| +.++++.+.... ..
T Consensus 87 ~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 87 PPVLNCFSDQ-DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFS 164 (675)
T ss_pred HHHHHhccCc-cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccC
Confidence 6677777777 8899999999999999998888899999999999999999999999866 455555544332 23
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
++.++|.+-+.+...++.+|...+.-+..+-...+-.+-.|+|.+++.|++.|.|++++||.-+-.+++.|-..+++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s--- 241 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS--- 241 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---
Confidence 58899999999999999999887777766655555679999999999999999999999999999999888765542
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
+|.. .. ...+++++..-+....+.++..|...+..+... .+.++.+
T Consensus 242 ------------~P~s--------------~d------~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~ 287 (675)
T KOG0212|consen 242 ------------SPSS--------------MD------YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLL 287 (675)
T ss_pred ------------Cccc--------------cC------cccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhh
Confidence 2210 00 112344455555666677888887777777764 4568899
Q ss_pred hHhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
|+..++..+..++.|... ..+..+...-+.+...++++ .+..++..+...+.++ ..+.|..+..++.-+-..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhh
Confidence 999999999999988766 46766666555555544433 2347888888888754 445888899888888777
Q ss_pred hchh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1689 LGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1689 ~g~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
.+.+ +.+.+.+.++..+.|++..|-..++..+..++..-.. +.+-+++..++..+..+..-++..+.-.+++++
T Consensus 367 ~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 7766 4478899999999999988888888888888775443 133344444555555444444444444555555
Q ss_pred HHhcc
Q 000143 1766 EHYAT 1770 (2058)
Q Consensus 1766 ~~~~~ 1770 (2058)
....+
T Consensus 444 ~lL~a 448 (675)
T KOG0212|consen 444 LLLNA 448 (675)
T ss_pred HHhCH
Confidence 44433
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=2e-10 Score=152.80 Aligned_cols=470 Identities=16% Similarity=0.184 Sum_probs=317.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
...+.+.+.+.++ +...|.-+..++..+...-+ ....-++..+.+.+.++++.+|-.|..++..+. .++..+
T Consensus 42 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAE 113 (526)
T ss_dssp STHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHH
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhh
Confidence 3455566666654 78888877666655543322 234557788888999999999999999988875 455568
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~ 1534 (2058)
.++|.+.+.+.+++|.+|+.|+.++..+....|+.+... +++.+.+++.|+++.|+.+|+.++..+ +.-.+ +.
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 899999999999999999999999999999888765442 688888899999999999999999998 21111 23
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l--~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+..++..+.+.+.++++..+ ..+..+.. +.. ...... ..+++.+...+.+.++.+...++.++..+.. .
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~-- 261 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---S-- 261 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---S--
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---c--
Confidence 45666666666678887665 55666543 211 111222 4577888888888788888888777765432 1
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
.+....+++.+...+.++++++|..+.+++..++....+..+.. ...+..+..+++..+|..+...+..++. .
T Consensus 262 --~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~--~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~ 334 (526)
T PF01602_consen 262 --PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQ--SLILFFLLYDDDPSIRKKALDLLYKLAN---E 334 (526)
T ss_dssp --HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTH--HHHHHHHHCSSSHHHHHHHHHHHHHH-----H
T ss_pred --hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhh--hhhhheecCCCChhHHHHHHHHHhhccc---c
Confidence 12567789999999999999999999999999887653332211 1223455545666688888887776664 3
Q ss_pred hHHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 VYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
.....+++.+...+.+. +..+|..++..++.++..+...+..|+ +.+++.+....+.+...+...+..++.....
T Consensus 335 ~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v----~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 335 SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYV----DTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHH----HHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHH----HHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 45667888888888554 888999999999999998876655554 5555556556666777778888887766543
Q ss_pred cchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH
Q 000143 1771 TSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2058)
Q Consensus 1771 ~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L 1849 (2058)
. -...+..+.+.+.+ .+..++..++..+|+....... .+....++..+
T Consensus 411 ~-~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~------------------------------~~~~~~~~~~l 459 (526)
T PF01602_consen 411 L-REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN------------------------------TESAPDILRSL 459 (526)
T ss_dssp T-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT------------------------------TTHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc------------------------------cccHHHHHHHH
Confidence 2 23355556655554 5678899999999997422110 00111233333
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000143 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1912 (2058)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~--~~~~~~R~~A~~~Lg~L 1912 (2058)
.....+....||...+..+..+....+. ... +.+.+.+..... +.+.++|+-|.+.+.-+
T Consensus 460 ~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 460 IENFIEESPEVKLQILTALAKLFKRNPENEVQ---NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHhhCCchhhH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3334455567888777777666655542 222 233344443344 77888888887766543
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=3.5e-08 Score=128.58 Aligned_cols=728 Identities=16% Similarity=0.151 Sum_probs=393.1
Q ss_pred HHHHHHHhHhccC--CcchHHHHHHHHhhhC--CCCHHHHHHHHHhhHhhHhhcccc------hHHHHHHHHHHHhcCCC
Q 000143 1282 IFTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE------APTLVSRLLDQLMKSDK 1351 (2058)
Q Consensus 1282 ~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~--~~~~~V~~av~~~L~~l~~~~~~~------~~~~v~~Ll~~L~~~~~ 1351 (2058)
.+|.-+..+.++. ..++.+++..|...+. ..+..|.+.+..||..+.+.-+-. ....+..++.-.. ++.
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~ 151 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKK 151 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCc
Confidence 4444444444331 1234555555655555 667889999999999998763211 2334444444333 456
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchh----chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKY----GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~----~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~ 1427 (2058)
+.+|..|..++..++.+..-.....+ .+..+..+.+...-.+..-...+..+.-|-..+...=.+.+..+-..++.
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 89999999999999885321111111 12233333333322222233333333333333332225667788888999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhhh----HHhHHHHHHHhccCC-ChHH--HH--HHHHHHHHHHhhChhhHhhhhh
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRT--KQ--SSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~~----v~~llp~Ll~~L~~~-~~~~--R~--~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
.+...+..|+-.+.+|+..+....+... ...++..+.+.--+. +... .. .-..+...++...++.....++
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 9999999999999999999987766522 133444443332221 1111 10 0112333344444555556778
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH-HHhccCCCChhH-HHHHHHHHh-ccccccCChhhHh
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT-LLMGLTDPNDHT-KYSLDILLQ-TTFVNTVDAPSLA 1575 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~-Ll~~l~d~~~~v-r~al~~L~~-~~f~~~~~~~~l~ 1575 (2058)
.+++.++.++...++++-+++-+++..+...... +.+.+-.. +...+.-+...+ |.++..+.. ..-..+..+|.+.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~ 390 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELT 390 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 8888888888888899999999999888764322 11111111 111121111111 223332221 0001112223322
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC--------------------------------CchhhhHhhhhHH
Q 000143 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--------------------------------KDMIPYIGLLLPE 1623 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~--------------------------------~~l~pyl~~ll~~ 1623 (2058)
..+..+...=.+++..-+.+.-++||.-...+|.. ..+.-|...++|.
T Consensus 391 ~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpl 470 (1176)
T KOG1248|consen 391 KTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPL 470 (1176)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHH
Confidence 22222222111111111222333333332222110 0011122223333
Q ss_pred HHHhh------CCC--CHHHHHHHHHHHHHHHHhhc---cc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh
Q 000143 1624 VKKVL------VDP--IPEVRSVAARAIGSLIRGMG---EE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2058)
Q Consensus 1624 L~~~l------~d~--~~~vR~~a~~aLg~l~~~lg---~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~ 1689 (2058)
...+. .+. ...+-.+....|-.+..++. -+ .|.++.|.+...+...+ +.|...+.+|-.+++..
T Consensus 471 a~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~--elr~~Ic~sL~~Lv~~n 548 (1176)
T KOG1248|consen 471 AMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP--ELRETICNSLRMLVEQN 548 (1176)
T ss_pred HHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--HhHHHHHHHHHHHHHcC
Confidence 22221 111 11122222222222222211 11 37778888888876433 57888888887777653
Q ss_pred c--------hh----HHHHhhHHHHHhhccCCh------hHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCH
Q 000143 1690 G--------TV----YFEHILPDIIRNCSHQRA------SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1690 g--------~~----~l~~llp~Ll~~l~~~~~------~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
- .+ +-..+||.+++....+.. ..|...+.... ...+...+......+...+-....+.++
T Consensus 549 ~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~--~~~~~~t~~dv~~~l~~s~~e~as~~~~ 626 (1176)
T KOG1248|consen 549 KPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIR--VDYFTVTPTDVVGSLKDSAGELASDLDE 626 (1176)
T ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHH--HHHhhcccHHHHHHHHHHHHhHhccchh
Confidence 1 11 335688888888776522 23333332222 1122222222223333333334444445
Q ss_pred HHHHHHHHHHH----HHHHHhcccchhchHHhHhh-hcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1752 SVRDAALGAGH----VLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1752 ~VR~~a~~al~----~lv~~~~~~~l~~llp~L~~-~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
.++..-...+- .+........+..++ .+.. .....+..++.-+.++++.++.. .++
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~--------------- 687 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS---PSG--------------- 687 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC---Cch---------------
Confidence 55443322222 222222223333333 2222 22334678888888888887521 000
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~ 1906 (2058)
+.+-..+.+.+...+....++.....+...+.+|+.+....+.....+++.+++-++-.+.+-+...|+.|.
T Consensus 688 --------~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af 759 (1176)
T KOG1248|consen 688 --------EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAF 759 (1176)
T ss_pred --------hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHH
Confidence 011112333445555556677888899999999999998888777788888888877777888999999999
Q ss_pred HHHHHHHH--Hh---C-cc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1907 RALGELVR--KL---G-ER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1907 ~~Lg~L~~--~l---g-~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
.||-.++. .. | +. .++.+++.+..++-.+...++...+.+++.++...+...-.+++..++..+.-.+...
T Consensus 760 ~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 760 ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 99988883 21 2 11 4678888888887655555554445677777766554334567788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCh----hhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhh
Q 000143 1978 ILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~----~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
.++++.+|...+..++...+. ++.++++|.++.++.+.. .+-.+-.-|..+++..+...+.-++|
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 999999999999999877764 578899999999887644 23334444455566665444444444
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=3.8e-11 Score=159.69 Aligned_cols=479 Identities=18% Similarity=0.193 Sum_probs=322.2
Q ss_pred hhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1451 LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1451 l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
..++.+....+.+.+.+.+++...|+.+..++..+....++. +.-+++.+.+-++++++.+|..|+++++.++.
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~----~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-- 108 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL----LILIINSLQKDLNSPNPYIRGLALRTLSNIRT-- 108 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH----HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--
Confidence 344566788899999999999999999999999888777663 23567788888999999999999999999873
Q ss_pred CchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC
Q 000143 1531 KNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1531 ~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~-llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
....+.++|.+.+.+.|+++++| .|+-++...-. .+...... +.+.+.+.+.|+++.++..|+.++..+ + .
T Consensus 109 -~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~---~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~--~ 181 (526)
T PF01602_consen 109 -PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR---KDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K--C 181 (526)
T ss_dssp -HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---HCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H--C
T ss_pred -cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c--c
Confidence 33458889999999999999998 46655554111 11222233 689999999999999999998888887 2 1
Q ss_pred CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc--cchHHHHHhhcccCCChHHHhhHHHHHHHHH
Q 000143 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1609 ~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~--~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~ 1686 (2058)
.++...+..+.++..+.+.+.+++|-.+..+++.+..++..-.. .. ..+++.+...+.+ .+..+...++..+..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~-~~~~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l- 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE-DADKNRIIEPLLNLLQS-SSPSVVYEAIRLIIKL- 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh-hhhHHHHHHHHHHHhhc-cccHHHHHHHHHHHHh-
Confidence 22222245666777777777889998888888888766542211 12 3567777676663 3333444444444432
Q ss_pred HHhchh-HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1687 AALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1687 ~~~g~~-~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
.... ....+++.+...+.++++.+|-.++.++..++......+ ......+.....+++..||..+++.+..++
T Consensus 259 --~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v----~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 259 --SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV----FNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH----GTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh----hhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 2222 357788889999999999999999999988877653222 111222333334888999999988887776
Q ss_pred HHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHH
Q 000143 1766 EHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2058)
Q Consensus 1766 ~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~ 1844 (2058)
. +..+..+++.+.+.+.+ .+..+|..++..++.+.....+. .+ .
T Consensus 333 ~---~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------~~----------------~ 377 (526)
T PF01602_consen 333 N---ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------AE----------------W 377 (526)
T ss_dssp ----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----------------HH----------------H
T ss_pred c---ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----------------HH----------------H
Confidence 4 33455578888887733 36678999999999886443110 11 1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc-chhhc
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPS 1923 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~-~~l~~ 1923 (2058)
.+..+..........+...+...+..++.+.+..-...+..+...+. .-.+++.+..++.++|+.+..... ...+.
T Consensus 378 ~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~---~~~~~~~~~~~~wilGEy~~~~~~~~~~~~ 454 (526)
T PF01602_consen 378 YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE---DISSPEALAAAIWILGEYGELIENTESAPD 454 (526)
T ss_dssp HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT---SSSSHHHHHHHHHHHHHHCHHHTTTTHHHH
T ss_pred HHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccCCcccccccHHH
Confidence 22222222222223344555566666666666554455555544432 236778899999999999888765 34566
Q ss_pred hHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000143 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1924 llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~--D~d~~VR~~Aa~a~~~l 1992 (2058)
++..+.+.+.+.++.+|..+..++..+....+.... .+.+++.+..... +.|++||+.|..-+.-+
T Consensus 455 ~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 455 ILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 777777777777788999999999888877654322 2467777777777 78999999998776654
No 29
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.6e-09 Score=135.80 Aligned_cols=625 Identities=19% Similarity=0.199 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHH----HHHHHHHHHHHHHhc-ccchhhHHHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRR----EGALLAFECLCEKLG-RLFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R----~~al~al~~L~~~lg-~~~~p~l~~llp~Ll 1426 (2058)
+..|+.|+..++.+...... . +.+..++...+..++.+..| -+.+.++..+..... +..-||....+..+-
T Consensus 189 ~~~r~~aalllsk~~sR~D~--~--~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~ 264 (1133)
T KOG1943|consen 189 GILRRSAALLLSKLFSRTDV--K--DLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLS 264 (1133)
T ss_pred chhHHHHHHHHHHHcccccH--H--HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhc
Confidence 47788888888887753211 1 12445555545444444444 566666666666555 345566666555554
Q ss_pred HHcCCCC--HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh---------------C
Q 000143 1427 VAFSDQV--VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC---------------A 1489 (2058)
Q Consensus 1427 ~~l~D~~--~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~---------------~ 1489 (2058)
.+-.+++ .-+|+.-.+...++.-.. -.-.+.+|+..++.-.+.+++-.. .
T Consensus 265 ~~~~~~d~~~llrKllvKl~QRiGlv~-------------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e 331 (1133)
T KOG1943|consen 265 VCRESNDGQSLLRKLLVKLVQRIGLVS-------------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDE 331 (1133)
T ss_pred ccccccccHhHHHHHHHHHHHHhhhee-------------cCCCCcchhhhcccchhhhccCccccccCccccccccccc
Confidence 3332222 233333333332221000 001356898876655444443211 1
Q ss_pred hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhH--HHHHHHHHhccccc
Q 000143 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVN 1567 (2058)
Q Consensus 1490 p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~v--r~al~~L~~~~f~~ 1567 (2058)
.++....+..++..|...++|.+..||..|++.++++....+..-..+++...+..+.--+++- -.++-+++......
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 2234556678888899999999999999999999999988763333555555555332111111 12222233211222
Q ss_pred cCChhhHhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH-hhCCCCHHHHHH
Q 000143 1568 TVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVDPIPEVRSV 1638 (2058)
Q Consensus 1568 ~~~~~~l~~llp~L~~~L~--------d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~-~l~d~~~~vR~~ 1638 (2058)
-.-...+..++|.+.+++. .....+|..||-++-.+++. ..+.++.|+++.+.+.|+. ++-|+.-+.|.+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 2223345678898888773 13467999999999999886 5778999999988887654 577999999999
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHh-hccCChhHHHHHH
Q 000143 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRASVRDGYL 1717 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~-l~~~~~~vR~~al 1717 (2058)
|..|+-..+...| .+|.-++.+ .... .-.-..|..+-..+...+..+. .|.+.++..++.. +.+.+..+|+.+.
T Consensus 491 AsAAlqE~VGR~~--n~p~Gi~Li-s~~d-y~sV~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 491 ASAALQENVGRQG--NFPHGISLI-STID-YFSVTNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred HHHHHHHHhccCC--CCCCchhhh-hhcc-hhhhhhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence 9888776553322 344444422 2211 2222245554455554444332 2556677666655 8888999999999
Q ss_pred HHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc----------hh---chHHhHhhhc
Q 000143 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS----------LP---LLLPAVEDGI 1784 (2058)
Q Consensus 1718 ~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~----------l~---~llp~L~~~l 1784 (2058)
.++..+.....+.+.. ..+|+++...-..+...|....-+.+.++.....-. +. .++|.+...-
T Consensus 566 ~aL~~Ls~~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~ 642 (1133)
T KOG1943|consen 566 YALHKLSLTEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRY 642 (1133)
T ss_pred HHHHHHHHhhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence 9999988876664432 467888887777788888888877777654432111 11 1222222111
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH-HhhcCCCHHHH
Q 000143 1785 FNDN--WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVR 1861 (2058)
Q Consensus 1785 ~d~~--~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~-~~~~D~~~~VR 1861 (2058)
.... .-+|.+.+..+..+- .++. ..+ +++.-.-+..+. ....+.+ .+|
T Consensus 643 ~~rg~~~lmr~~~~~~Ie~~s--------------~s~~-------------~~~-~~~v~e~~~~ll~~~l~~~n-~i~ 693 (1133)
T KOG1943|consen 643 FYRGQGTLMRQATLKFIEQLS--------------LSKD-------------RLF-QDFVIENWQMLLAQNLTLPN-QIR 693 (1133)
T ss_pred hccchHHHHHHHHHHHHHHhh--------------hccc-------------hhH-HHHHHHHHHHHHHHhhcchH-HHH
Confidence 1111 123333333322220 0000 000 011111111111 1112333 788
Q ss_pred HHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCcchh-hchHHHHhhhcCCC-Ch
Q 000143 1862 QAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDP-SA 1937 (2058)
Q Consensus 1862 ~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L~~~lg~~~l-~~llp~L~~~l~d~-~~ 1937 (2058)
++|...++.++...- .+-.... .++..++..+.++ +..+|....-++|.+...+-...+ ..+...+....... ++
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~~-~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a 772 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEEA-PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWA 772 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccH
Confidence 999888888875321 1111111 3444455555655 566777666666655533221122 22333333333333 67
Q ss_pred hHHHHHHHHHHHHHHhhC----hhhhHhHHhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhC-hhhHH-----H
Q 000143 1938 SRRQGVCIGLSEVMASAG----KSQLLSFMDELIPTIRTALCDSI----LEVRESAGLAFSTLFKSAG-MQAID-----E 2003 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~----~~~l~~~~~~ll~~L~~~L~D~d----~~VR~~Aa~a~~~l~~~~g-~~~~~-----~ 2003 (2058)
..|+..+.++..++...+ .+...++.+.++..+-+...|+. .-||++|..++-.+.-... ++.+| .
T Consensus 773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~ 852 (1133)
T KOG1943|consen 773 EARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINR 852 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHH
Confidence 889888888887776654 23445566666666666655543 4589999999988865443 22222 2
Q ss_pred HHHHHHHhcCC--CcchHHHHHHHHHHHhhc
Q 000143 2004 IVPTLLHALED--DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2004 ilp~Ll~~L~~--~~~~~~al~aL~~i~~~~ 2032 (2058)
++-.+++.--+ +..++.+.+++.+++.+.
T Consensus 853 ~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~ 883 (1133)
T KOG1943|consen 853 IIRYFVQQAVEKIDRLRELAASALNQIVVHS 883 (1133)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhceeecC
Confidence 22222222111 123688899998888773
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=6.7e-09 Score=137.09 Aligned_cols=490 Identities=13% Similarity=0.090 Sum_probs=309.7
Q ss_pred CHHHHHHHHHHH-HHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1351 KYGERRGAAFGL-AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L-~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
+...|+.+.+.+ +.+.. |.+.. .+.+.+...+.++ |...|.-+...+...++.- .....-.++.+.+.+
T Consensus 45 ~~~~kk~alKkvIa~mt~--G~DvS---~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl 114 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTM--GRDVS---YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDT 114 (746)
T ss_pred CHHHHHHHHHHHHHHHHC--CCCch---HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHc
Confidence 344455555433 33333 32221 4555566666666 7888887666555443321 122345678888999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1430 ~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
.|+++.+|-.|++++..+. .++.++.+++.+.+.+.|.+..+|+.|+.++..+....|+.+.. ..+++.+.++++
T Consensus 115 ~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~ 189 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLN 189 (746)
T ss_pred CCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhc
Confidence 9999999999988777652 33445778888899999999999999999999998877754322 256677888899
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchh--HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1510 DTHPKVQSAGQTALQQVGSVIKNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~--i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
|+++.|...|+.+|..+.+..++.. ....+..++..+.+-++-.+ ..++.+.. +.+. +......++..+...++
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~-~~~e~~~il~~l~~~Lq 266 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPS-DKESAETLLTRVLPRMS 266 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCC-CcHHHHHHHHHHHHHhc
Confidence 9999999999999999976543321 24445556666655444433 45555543 3322 22334567777788888
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L 1666 (2058)
..++.|...|+.++-.+.... ++.........+.+.++.+ ...++++|..+.+.+..+..... ..|..-+..++-.
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~- 342 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVR- 342 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcc-
Confidence 889999999888887765432 2122222233344555555 45678999999999988876442 2222222222222
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
.+|+.. +|......|..++ ..+..+.++.++...+.+.+...+..++.++|.++..+.. ....++..+++.+
T Consensus 343 ~~Dp~y-IK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll 414 (746)
T PTZ00429 343 YSDPPF-VKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIV 414 (746)
T ss_pred cCCcHH-HHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHh
Confidence 235544 5666666555543 4446678888899888888999999999999999876654 4566777777777
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc---CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCC
Q 000143 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823 (2058)
Q Consensus 1747 ~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l---~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~ 1823 (2058)
.+..+.+ ..++..++.++..+.... +++.+.+.+ .-.+...|.+.+.++|++...+
T Consensus 415 ~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I----------------- 473 (746)
T PTZ00429 415 DRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI----------------- 473 (746)
T ss_pred cCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------------
Confidence 7655544 356788888888776542 345444322 1135677888888888863211
Q ss_pred cchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHH
Q 000143 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903 (2058)
Q Consensus 1824 ~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~ 1903 (2058)
+.+ ..++..+.....+....||...+.....+....|...++.+..++.... -.+.++++|.
T Consensus 474 ---~~a-------------~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t--~~~~d~DVRD 535 (746)
T PTZ00429 474 ---ENG-------------KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVT--THSDDPDVRD 535 (746)
T ss_pred ---hhH-------------HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--hcCCChhHHH
Confidence 000 1223233333445567788777766666665566544554444443322 2357888888
Q ss_pred HHHHHH
Q 000143 1904 VAGRAL 1909 (2058)
Q Consensus 1904 ~A~~~L 1909 (2058)
-|..-.
T Consensus 536 RA~~Y~ 541 (746)
T PTZ00429 536 RAFAYW 541 (746)
T ss_pred HHHHHH
Confidence 776544
No 31
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.4e-07 Score=119.60 Aligned_cols=491 Identities=15% Similarity=0.203 Sum_probs=280.7
Q ss_pred chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-h-Cccc
Q 000143 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG-F-GISS 1373 (2058)
Q Consensus 1297 ~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~-~-g~~~ 1373 (2058)
.++.+++.|++.++|.+..||-++++.++.+....+... .+.+...++-+.-.+++..-.+|+-+|+.++.. + -+..
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 356788889999999999999999999998887665432 344555555333334567777999999998863 2 1222
Q ss_pred cchhchHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Q 000143 1374 LKKYGIAATLREGLADR-------NSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLL-VAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1374 l~~~~il~~L~~~l~~~-------~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll-~~l~D~~~~VR~aA~~al 1444 (2058)
+ .+++|.+...+.=+ ...++|++|+.....+++... ..++|++..+.+.++ ..+-|++-++|++|..|+
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 2 27888888776422 245789999999999988765 468999998887766 678999999999999999
Q ss_pred HHHHHhhhh--hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH-HhcCCCHHHHHHHHH
Q 000143 1445 RAMMSQLSA--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE-VLTDTHPKVQSAGQT 1521 (2058)
Q Consensus 1445 ~~l~~~l~~--~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~-~L~D~~~~VR~aA~~ 1521 (2058)
...+...+. ++++.+ ...+.-.-..|..+-..+..... ++..|...++..+.. -+..-++.+|+.+++
T Consensus 496 qE~VGR~~n~p~Gi~Li-----s~~dy~sV~~rsNcy~~l~~~ia----~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLI-----STIDYFSVTNRSNCYLDLCVSIA----EFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHhccCCCCCCchhhh-----hhcchhhhhhhhhHHHHHhHHHH----hhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 888766443 233211 11111011122222222222222 233344455554443 366777999999999
Q ss_pred HHHHHHhhcCchhH-HhHHHHHHhccCCCChhHHH----HH-HHHHh---ccc-cccCChhhHhh---HHHHH-HHhhc-
Q 000143 1522 ALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKY----SL-DILLQ---TTF-VNTVDAPSLAL---LVPIV-HRGLR- 1586 (2058)
Q Consensus 1522 aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr~----al-~~L~~---~~f-~~~~~~~~l~~---llp~L-~~~L~- 1586 (2058)
+|..+...-. +++ ...+|.++.....++...|. +. +.++. ... ....+...++. ++|.+ .+.+.
T Consensus 567 aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 567 ALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYR 645 (1133)
T ss_pred HHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhcc
Confidence 9999876432 233 35556666555545544442 11 11111 110 00111112222 12222 22111
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH----hhCCCCHHHHHHHHHHHHHHHHh--hcccCcc-chH
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK----VLVDPIPEVRSVAARAIGSLIRG--MGEENFP-DLV 1659 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~----~l~d~~~~vR~~a~~aLg~l~~~--lg~~~~~-~ll 1659 (2058)
....-.|...++.+..+.. .+..-+ ...+...... .+.+++ .+|..+..+++.++.. .+++... +++
T Consensus 646 g~~~lmr~~~~~~Ie~~s~--s~~~~~---~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li 719 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSL--SKDRLF---QDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLI 719 (1133)
T ss_pred chHHHHHHHHHHHHHHhhh--ccchhH---HHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHH
Confidence 1113345555555555432 121111 1112222222 223455 7899999999999874 3344333 377
Q ss_pred HHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH-HHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhch-hHHHhHH
Q 000143 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGV-QFQNYLQ 1736 (2058)
Q Consensus 1660 p~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~-l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~-~f~pyl~ 1736 (2058)
...+..+.++.+...|.+...+++.+....=.-+ .+.+...++...-.. .+.-|...+.++..++...+. .|..-..
T Consensus 720 ~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~ 799 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIE 799 (1133)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHH
Confidence 7777888766666678777766655432211112 233333333333333 667788888888888887762 2333445
Q ss_pred HHHHHHHHhccC----CC----HHHHHHHHHHHHHHHHHhcc-cch-----hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1737 QVLPAILDGLAD----EN----ESVRDAALGAGHVLVEHYAT-TSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d----~~----~~VR~~a~~al~~lv~~~~~-~~l-----~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
++...+++++.| .. .-||++|+.++..+...... +.+ ..++-.+.+-..++-.+.|..+..++..+
T Consensus 800 k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 800 KFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 555556665543 22 46999999999888766552 221 11222222222344456677777666666
Q ss_pred HHH
Q 000143 1803 LFK 1805 (2058)
Q Consensus 1803 l~~ 1805 (2058)
+++
T Consensus 880 ~~~ 882 (1133)
T KOG1943|consen 880 VVH 882 (1133)
T ss_pred eec
Confidence 543
No 32
>PRK09687 putative lyase; Provisional
Probab=99.40 E-value=1.5e-11 Score=145.96 Aligned_cols=251 Identities=19% Similarity=0.136 Sum_probs=151.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
++.|...+.++ +..+|..++.+|+.+.. ..+++.+...+.|+++.+|..|.++|+.+...- ......
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~a 91 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDNV 91 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHHH
Confidence 44555666665 78888888887765532 245666677778888888888888888874211 112345
Q ss_pred HHHHHHh-ccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~~-L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
+|.|... ++|++|.+|..++.+||.+....+ ...+.+++.+...+.|+++.||..+..+|+.++. ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHH
Confidence 6666655 567788888888888887743221 1134556666777788888888888888876642 235
Q ss_pred HHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
++.|+..+.|++..+| .|+.+|+...+ ....+.+.|...+.|.++.||..|...+|.+. +
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~-------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~-------- 221 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY-------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D-------- 221 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C--------
Confidence 5666667777766666 45556654211 01134555666666666666666666555432 1
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHH
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L 1682 (2058)
+..+|.|...+.+++ +|..++.|+|.+.. ++.+|.|.+.+..+.+..++..+..++
T Consensus 222 ~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 134555666666554 44455555555542 345666655555344444555444443
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=2.4e-11 Score=168.15 Aligned_cols=274 Identities=22% Similarity=0.252 Sum_probs=203.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
.++.|+..+.|+++.||..|..+|+.+.. +..+|.|...|.|+++.+|..|+.+|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45677788899999999999999987631 34678888899999999999999999887643221
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHH
Q 000143 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2058)
Q Consensus 1501 ip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp 1579 (2058)
.+.+...|+|+++.||.+|+.+|+.+.. ++ .+.++..+.|++..+| +++.+|+.. +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2356677888999999999999998752 11 2346678889998888 677777642 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchH
Q 000143 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2058)
Q Consensus 1580 ~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ll 1659 (2058)
.+...+.|.++.+|..++..++.+... + ...++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999888877541 1 1125677788889999999999999987742 1 2344
Q ss_pred HHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHH
Q 000143 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2058)
Q Consensus 1660 p~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~il 1739 (2058)
+.+...|. |+++.+|..++.+|+.+. . ++.++.|...+.|+++.||..++.+|+.+. +. +...
T Consensus 810 ~~l~~aL~-d~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALR-ASAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhc-CCChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 55667776 556779999999887642 2 245577778888899999999988888751 11 2456
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1740 PAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
+.+...+.|++++||..|.+++..
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Confidence 777788888899999988888753
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-10 Score=143.08 Aligned_cols=377 Identities=17% Similarity=0.156 Sum_probs=270.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----hH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
+..+..+..+++..+..+..++..+....... .+ ..++|.+.+.+. +.+...+..|..+|..++.+..++....
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34444444445666777777777776543321 12 578999999997 5668999999999999999877664433
Q ss_pred h-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCCh--hHHHHHHHHHhccccccC
Q 000143 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1497 L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~--~vr~al~~L~~~~f~~~~ 1569 (2058)
. ...+|.++.++.+++..|++.|.|||+.++..... .++ ..+++.|+..+..+.. ..|.+.-++.. +....
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcCC
Confidence 2 36789999999999999999999999999875432 122 4667778888777764 45644444333 11111
Q ss_pred -Ch---hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1570 -DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1570 -~~---~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
.. ..++.++|.|.+++.+.+.++...||.++..+... ..+.+.-.+ -.++|.|..++..+.+.++..|.+++|
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 11 24567899999999999999999999999998763 222222222 267899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++.+-+.. .-...+|.|...+........|..+++.++.|..+.... .-..++|.++..++..+...|..+
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 988754443 234688888888885555558999999999998854332 114689999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccch---hc---------hHHhHhh
Q 000143 1717 LTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL---PL---------LLPAVED 1782 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl~--~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l---~~---------llp~L~~ 1782 (2058)
++++++++..-..+-..|+- .+++++...|.-.+..+-..++.++..+.+....... .. -+..++.
T Consensus 385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~ 464 (514)
T KOG0166|consen 385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN 464 (514)
T ss_pred HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence 99999988766665556663 3899999999777777777778888776654221111 11 2333444
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 000143 1783 GIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1783 ~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+-.+++..|...|...+....
T Consensus 465 LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 465 LQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred hhccccHHHHHHHHHHHHHhc
Confidence 446678888888888888763
No 35
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.6e-08 Score=122.34 Aligned_cols=648 Identities=15% Similarity=0.188 Sum_probs=360.4
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHH-HHHHHH--------HHhhc--
Q 000143 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAED--------IWDRY-- 1124 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~-r~~a~~--------~w~~~-- 1124 (2058)
.+.+.+++.++.++|+..|.+|++.|.+.... |.+. ..-+-++..|+.+.+ |+.|.- -|+..
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv--~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~ 75 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFV--SSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA 75 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHH--HHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC
Confidence 35677889999999999999999999977511 2222 222334556666655 665542 37765
Q ss_pred -C--CCCCC----CH-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhH
Q 000143 1125 -G--YDFGT----DY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2058)
Q Consensus 1125 -~--~~~~~----~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~ 1195 (2058)
| +...+ -+ +.+++.+.+....+|-.-..++-.++. .+|+.|+.++...-..++. .....--
T Consensus 76 ~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs----------~~~~~vy 145 (1010)
T KOG1991|consen 76 PGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQS----------QDANHVY 145 (1010)
T ss_pred CCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcC----------cchhhHH
Confidence 2 11211 24 778888888889999999999977764 5688888888877665431 1112346
Q ss_pred HHHHHHHHhhhhhC--CC----Ch----HHHHHHHHH---hhccCCCHHHH---HHHHHHHHHHHHh-h-----Cccchh
Q 000143 1196 GIALALHSAADVLR--TK----DL----PVIMTFLIS---RALADTNADVR---GRMLNAGIMIIDK-H-----GRDNVS 1253 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~--~~----~~----~~l~~~Li~---~~L~d~~~~VR---~~al~a~~~~i~~-~-----g~~~~~ 1253 (2058)
+++.++..++.... .+ .+ ...++.+.+ +.+.+.+...- +.++.....++.. . ..+.+.
T Consensus 146 ~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 78888888887543 11 11 223333322 33444443322 2223322222211 1 124455
Q ss_pred hHHHHHHHHhcccCCChh-----------HHHHHHHHHHHHHHHHHhHhccCC---cc------------hHHHHHHHHh
Q 000143 1254 LLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKDD---PK------------VHAVVDKLLD 1307 (2058)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~e-----------~~~~vR~~av~~Lg~La~~l~~~~---p~------------i~~iv~~Ll~ 1307 (2058)
.-+.+|...++.+.+.+. .+-..++=|+..|.++.+.+.+.. ++ .+.+...+++
T Consensus 226 ~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666443211 122355667888888886554321 11 1222222222
Q ss_pred hhC---C---CCHHHHHHHH----HhhHh--hHhhcccchHHHHHH-HHHHHh---------cCC--------------C
Q 000143 1308 VLN---T---PSEAVQRAVS----SCLSP--LMQSMQDEAPTLVSR-LLDQLM---------KSD--------------K 1351 (2058)
Q Consensus 1308 ~L~---~---~~~~V~~av~----~~L~~--l~~~~~~~~~~~v~~-Ll~~L~---------~~~--------------~ 1351 (2058)
.+. . -++.|-.-+. .|... .-+.++++...++.. ++..+. +++ -
T Consensus 306 ~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 306 ILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 221 1 0111111111 11100 000011111111111 111111 111 1
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhhHHH-H
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ-M 1421 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-------~~~~~~~R~~al~al~~L~~~lg~--~~~p~l~~-l 1421 (2058)
+..+.+|..++-.++...|.+.++ .+++++.+.+. +.++++..+||+.+++.+++.+.+ .++..+.. +
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 233567788888888888888875 78888887765 335789999999999999987753 23333333 5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhhhhhH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhCh---hhHhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQGV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~-~~l~~~~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2058)
+++++..+.++--..|..|++.++.+. ..++.... ...+....++|. |.+-.+|..|+.+|..+...++ ..+++
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 688888999999999999999999998 45555543 677777788887 7789999999999999998876 34899
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHhhcCc--hh-HHhHHHHHHhccCC---CChhHH-HHHHHHHh---c-
Q 000143 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHTK-YSLDILLQ---T- 1563 (2058)
Q Consensus 1496 ~L~~Iip~L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~-i~~lvp~Ll~~l~d---~~~~vr-~al~~L~~---~- 1563 (2058)
++|.++..++.+.++.+-..-....+. +..|++.+.. .+ .+.+...+.+.+.+ .++... .++.+.|- +
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 999999999999987665544433333 3444444432 12 25556666666653 211111 22222221 0
Q ss_pred ccccc-CChh-----hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHH
Q 000143 1564 TFVNT-VDAP-----SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2058)
Q Consensus 1564 ~f~~~-~~~~-----~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~ 1637 (2058)
+.... .+.| .-..+.|++...++..-.++-..+++++..+.-. .+++.|-+=.+++.+.+++++
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~------- 693 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQD------- 693 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhh-------
Confidence 00000 0001 1122334444444443334444444444333211 122233222333333333322
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc--CChhHHHH
Q 000143 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDG 1715 (2058)
Q Consensus 1638 ~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~--~~~~vR~~ 1715 (2058)
-|-+||++++|.+-+.+.-+... ... .+.+...++..+...+++ ....-.+.
T Consensus 694 ------------~~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~~ 747 (1010)
T KOG1991|consen 694 ------------DGIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDCES 747 (1010)
T ss_pred ------------hhHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 23458888999887666544332 100 011222233333333333 23445667
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC--CCHHHHHHHH
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAAL 1758 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d--~~~~VR~~a~ 1758 (2058)
++.++..+...++.....|++.++...+..+.. +....|..++
T Consensus 748 a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~l 792 (1010)
T KOG1991|consen 748 ACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLL 792 (1010)
T ss_pred HHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 889999998888777778888888888887766 3344454443
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.38 E-value=5.1e-11 Score=165.04 Aligned_cols=274 Identities=21% Similarity=0.228 Sum_probs=181.4
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchH
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il 1380 (2058)
.++.|++.|.|+++.||+.++..|+.+. .+..++.|...| .++++.+|..|+.+|..+..... -.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~--------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP--------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC--------ch
Confidence 3467778888999999998888877653 134555555444 66678899988888877754321 12
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
+.+...+.++ ++.+|..++.+++.+.. +. .+.++..+.|+++.||.+|..+|+.+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 3455556654 88889888887776531 11 1234567888899999988888876511 1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2058)
+.+...+.|+++.+|.+++.+|+.+....+ ..++.|..+++|+++.||.+|+.+|+.++.. ..+.+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345667888888888888888887754321 2255677788888888998888888887541 12234
Q ss_pred HHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhh
Q 000143 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2058)
Q Consensus 1541 ~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ 1619 (2058)
.+...+.|+++.+| .|+.+|+... -...++.|...++|+++.||..|+..++.+. .+ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 46667777777777 4666665411 0123466667777777777777777766541 11 13
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHHHH
Q 000143 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2058)
Q Consensus 1620 ll~~L~~~l~d~~~~vR~~a~~aLg~ 1645 (2058)
..+.|..+++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 45666677777777777777777653
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=4.5e-08 Score=129.40 Aligned_cols=496 Identities=12% Similarity=0.076 Sum_probs=315.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc-hHHHH
Q 000143 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVV 1302 (2058)
Q Consensus 1224 ~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~-i~~iv 1302 (2058)
.|.+++..-|..++.-.+..+.. | ..+..+++-+.+.+... +. .+|.-+...+...+ +.+|. .--.+
T Consensus 40 ~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~----d~--elKKLvYLYL~~ya----~~~pelalLaI 107 (746)
T PTZ00429 40 DLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPST----DL--ELKKLVYLYVLSTA----RLQPEKALLAV 107 (746)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCC----CH--HHHHHHHHHHHHHc----ccChHHHHHHH
Confidence 34556666666666655555544 3 34455665555554431 12 56766666665554 33343 33457
Q ss_pred HHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHH
Q 000143 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2058)
Q Consensus 1303 ~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~ 1382 (2058)
+.+.+-+.++++.+|-.+..+++.+.. +..-+++..-+.....+.++-+|+.|+.|+..+....+ +.+....+++.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHH
Confidence 888889999999999877777665431 22333333334444456789999999999999987543 33333467788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hhHHhHH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLVL 1460 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~v~~ll 1460 (2058)
|.+.+.|. |+.+.-.|+.++..+.+..+..++ .....+..++..+.+-++.-+-...+.+.. ..+. .....++
T Consensus 184 L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il 258 (746)
T PTZ00429 184 LVELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLL 258 (746)
T ss_pred HHHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 88877766 899999999999888876554332 233445556667776666666655555532 2222 2235678
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
..+...+.+.+..+-.+|+.++-.+.... +..+...+..+.+.++.+ ..+.+.+|..++..+..+..... ..+..-+
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~ 336 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNL 336 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHH
Confidence 88888889889888888888888776543 233334444454555555 45678999999999988877432 2334446
Q ss_pred HHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1540 PTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1540 p~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
..++-...||.. ++ ..++.+..+. +......|+.-|.....+.+.+.++.+...+|.++.-+ ....+
T Consensus 337 ~~Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~------~~~a~ 404 (746)
T PTZ00429 337 DSFYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV------DSVAP 404 (746)
T ss_pred HhhhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC------hHHHH
Confidence 666667788864 55 5777665421 12334567777777778888999999999999998643 12345
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc--ccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L--~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
.++..|..++.+... +...++..+-.+.+.....+ +++.+...+ ..-.+...|.+.+|.+|+.+..... ...
T Consensus 405 ~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~ 478 (746)
T PTZ00429 405 DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKD 478 (746)
T ss_pred HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHH
Confidence 667777777766443 33345666767766544332 456665543 2224555788889999998775532 345
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc-c-CCCHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L-~-d~~~~VR~~a~~al~~l 1764 (2058)
++..++..+.+.++.||-.++.+...+......+.. ..+..+++.+ . +.+++||+.|.--.+.+
T Consensus 479 ~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 479 IIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 555556666667889999888888766655544333 3344444433 3 46789999887655543
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=8.1e-06 Score=107.27 Aligned_cols=549 Identities=13% Similarity=0.150 Sum_probs=314.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHH-HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS-LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~-Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
++++.++..+..+.+.+-.++.+++..+...... ..+.+-.. +...++-+.-.+=..+++++..+.+.|++...+++.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~ 390 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELT 390 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 4555555666666777777777777777654333 11111111 222232222122234678888888888887777666
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccC-ChhhHhhH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV-DAPSLALL 1577 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~-~~~~l~~l 1577 (2058)
..+..+..+-.+++..-+..--+|+|.....++...+-.++|.=+. .+....+|.-+--+++ .+.+.. -.-....+
T Consensus 391 ~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~--~~s~~~~RsWLLPvLR-~~i~~A~La~F~~~i 467 (1176)
T KOG1248|consen 391 KTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH--AESLSFTRSWLLPVLR-DYIIGASLAFFTEYI 467 (1176)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc--ccccccchhHhHHHHH-HhhccCcHHHHHHHH
Confidence 6666655544444544455777788888888876666666665441 1111222321111111 000000 00012234
Q ss_pred HHHHHHh------hcCCC--H-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000143 1578 VPIVHRG------LRERS--A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1578 lp~L~~~------L~d~s--~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~ 1648 (2058)
+|..... +++.. . ..+.-..++++.+-....-|-|+..-+..+-+.+...+... ++.|.+.+.+|..+++
T Consensus 468 vpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~ 546 (1176)
T KOG1248|consen 468 VPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVE 546 (1176)
T ss_pred HHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHH
Confidence 4443322 22211 1 34455566666665554566777666667777777766644 4999999999999987
Q ss_pred hh------cc------cCccchHHHHHhhcccCCCh-----HHHhhHHHHHH-HHHHHhchhHHHHhhHHHHHhhccCC-
Q 000143 1649 GM------GE------ENFPDLVSWLLDALKSDNSN-----VERSGAAQGLS-EVLAALGTVYFEHILPDIIRNCSHQR- 1709 (2058)
Q Consensus 1649 ~l------g~------~~~~~llp~L~~~L~~d~~~-----~~R~~aa~~L~-~i~~~~g~~~l~~llp~Ll~~l~~~~- 1709 (2058)
.. ++ .+-..++|.+++.-.+.... ..|......+. ......+.+....+...+.+...+.+
T Consensus 547 ~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~ 626 (1176)
T KOG1248|consen 547 QNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDE 626 (1176)
T ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchh
Confidence 53 11 13456888888776543222 11222222221 22223333322333333333333333
Q ss_pred ---hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-----hcccchhchHHhHh
Q 000143 1710 ---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVE 1781 (2058)
Q Consensus 1710 ---~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~-----~~~~~l~~llp~L~ 1781 (2058)
...+...+..+..++.+..+. ++..+....-...+.....++..+.+.+..+... +..+.++.+...+.
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~---~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ 703 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTES---QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLL 703 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccch---hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 233344455555555544432 2222232222223344677888888888877655 22334455566666
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhh---HHHHHHHHHHhhcCCCH
Q 000143 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK---RNEVLAALYMVRSDVSL 1858 (2058)
Q Consensus 1782 ~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~---~~~vL~~L~~~~~D~~~ 1858 (2058)
+.+++...-.|...+.++..++... +.+. ....++.+.....+.+.
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~-------------------------------~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLL-------------------------------SAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhc-------------------------------cHHHHHHHHHHHHHHHHhcccccH
Confidence 6666666666777777666664321 1111 11223333333467777
Q ss_pred HHHHHHHHHHHHHH--hhC---hhh-HHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----CcchhhchHHHH
Q 000143 1859 SVRQAALHVWKTIV--ANT---PKT-LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL----GERVLPSIIPIL 1928 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv--~~~---~~~-l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l----g~~~l~~llp~L 1928 (2058)
.-|+.|.+++..+. ... +.. ....+..++..|...+..+...++...+-+++.++... +...+++++..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 88888888887776 221 110 13344445555554444444444443344555555443 344678888888
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHH
Q 000143 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2058)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~ 2007 (2058)
.-.+.+..++++.+|+..+.-.+..++...+.+|.+.++|.+.....|....+|.....-|..+++..|...+..++|.
T Consensus 833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 8888999999999999999988888988889999999999999999999999999999999999999998877777774
No 39
>PRK09687 putative lyase; Provisional
Probab=99.36 E-value=4.3e-11 Score=142.14 Aligned_cols=253 Identities=12% Similarity=0.039 Sum_probs=192.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
.-++.+...+.|++..||..+..+|+.+.. ..+++.+...+.+++..+|..++.+||.+...... ...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~ 90 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDN 90 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHH
Confidence 345567778899999999999999887632 35566777778899999999999999998642110 235
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhH
Q 000143 1500 IVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 1577 (2058)
Q Consensus 1500 Iip~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~l 1577 (2058)
.++.|... ++|+++.||..|+.+|+.++..-.. .....++.+...+.|++..|| .++.+|+... -...
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~a 160 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAA 160 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHH
Confidence 66777766 7899999999999999998643221 124566677788889999998 5777776421 1236
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccc
Q 000143 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2058)
Q Consensus 1578 lp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ 1657 (2058)
++.|...++|+++.+|..|+..+|.+.. + .+...+.|...+.|+++.||..|+.+||.+. . +.
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~---~~ 223 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D---KR 223 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C---hh
Confidence 7889999999999999999999987722 1 2357788999999999999999999998854 2 47
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhc-cCChhHHHHHHHHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~-~~~~~vR~~al~~l~ 1721 (2058)
.+|.|++.|.++. +|..++.+||++. . +..+|.+...+. +++..++..+...+.
T Consensus 224 av~~Li~~L~~~~---~~~~a~~ALg~ig----~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 224 VLSVLIKELKKGT---VGDLIIEAAGELG----D---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHcCCc---hHHHHHHHHHhcC----C---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 8899999988533 5777888888753 3 367888888776 678889888777664
No 40
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.3e-05 Score=103.42 Aligned_cols=378 Identities=15% Similarity=0.168 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhc--cCC--cc----hH
Q 000143 1228 TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA--KDD--PK----VH 1299 (2058)
Q Consensus 1228 ~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~--~~~--p~----i~ 1299 (2058)
..+.+|.....|...++...-++.|+.+++....+|.... . ..--+++.+|-.+++.+. ..+ .. +.
T Consensus 101 ~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~----~--~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~ 174 (1010)
T KOG1991|consen 101 VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQD----A--NHVYGALLCLYQLFKTYEWKKDEERQPLGEAVE 174 (1010)
T ss_pred CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcc----h--hhHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 3566787777777788877667899999999999987631 1 233567888888887543 111 11 22
Q ss_pred HHHHHH----HhhhCCCCHH---HHHHHHHhhHhhHhhc-------ccchHHHHHHHHHHHhcC--------C-------
Q 000143 1300 AVVDKL----LDVLNTPSEA---VQRAVSSCLSPLMQSM-------QDEAPTLVSRLLDQLMKS--------D------- 1350 (2058)
Q Consensus 1300 ~iv~~L----l~~L~~~~~~---V~~av~~~L~~l~~~~-------~~~~~~~v~~Ll~~L~~~--------~------- 1350 (2058)
..+|.+ .+.+..++.. .++.+.+..-.++..- .+.+...+...+..+... +
T Consensus 175 ~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~ 254 (1010)
T KOG1991|consen 175 ELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSW 254 (1010)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccc
Confidence 333333 3344555533 3333444332222211 122334444444333211 0
Q ss_pred -CHHHHHHHHHHHHHHHhhhCccccch--h---------chHHHHHHH-HhCCCCHHH-----HHHHHHHHHHHHHHhc-
Q 000143 1351 -KYGERRGAAFGLAGVVKGFGISSLKK--Y---------GIAATLREG-LADRNSAKR-----REGALLAFECLCEKLG- 1411 (2058)
Q Consensus 1351 -~~~vR~~Aa~~L~~l~~~~g~~~l~~--~---------~il~~L~~~-l~~~~~~~~-----R~~al~al~~L~~~lg- 1411 (2058)
=|...+-|++.+.++.+..|...... + ...+.+.+. ++.-..|+. -+.-..++..+-....
T Consensus 255 ~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~ 334 (1010)
T KOG1991|consen 255 PWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSH 334 (1010)
T ss_pred cchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccH
Confidence 15577889999999999888654332 1 111111111 110001211 0111122223322221
Q ss_pred ----ccchhhHHHHHHHH-HH--HcCC---------CCHHHHH-------------HHHHHHHHHHHhhhhhhHHhHHHH
Q 000143 1412 ----RLFEPYVIQMLPLL-LV--AFSD---------QVVAVRE-------------AAECAARAMMSQLSAQGVKLVLPS 1462 (2058)
Q Consensus 1412 ----~~~~p~l~~llp~L-l~--~l~D---------~~~~VR~-------------aA~~al~~l~~~l~~~~v~~llp~ 1462 (2058)
+.++|++.-++..+ +. +++| +.+.+|+ +|...+..++++-+++.++.+++.
T Consensus 335 ~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 335 ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 35677776544322 22 2333 3445554 677777777777777777888888
Q ss_pred HHHhcc--------CCChHHHHHHHHHHHHHHhhChhh--Hhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hc
Q 000143 1463 LLKGLE--------DKAWRTKQSSVQLLGAMAYCAPQQ--LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS-VI 1530 (2058)
Q Consensus 1463 Ll~~L~--------~~~~~~R~~a~~~Lg~la~~~p~~--l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~-~~ 1530 (2058)
+.+.+. ..+.|.+.+|+..+|+++....+. ....+ .-+++.++..++++-...|..||+.++.+++ .+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df 494 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF 494 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC
Confidence 777665 246888999999999999643211 11111 1456777888899999999999999999994 34
Q ss_pred Cchh-HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhC
Q 000143 1531 KNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1531 ~~~~-i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
.++. +...+.... ++|. |.+-.||..|+-++..+.....
T Consensus 495 ~d~~~l~~ale~t~---------------------------------------~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 495 KDPNNLSEALELTH---------------------------------------NCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred CChHHHHHHHHHHH---------------------------------------HHhccCCcCchhhHHHHHHHHHHhcch
Confidence 4332 122222222 3333 4444566666666666655322
Q ss_pred CC-CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1609 EP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1609 ~~-~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.. ..+.++++.+|..++.+.++-+-+. ....+..++..++++
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseE 578 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEE 578 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHh
Confidence 21 2367888888888888776543332 233455555555555
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.6e-09 Score=133.17 Aligned_cols=334 Identities=18% Similarity=0.155 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLV 1427 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~ 1427 (2058)
...+..+.+.+..+...-. ...+....++|.+.+.+....++..+..|..++..|+.+-...-.-++. ..+|.+..
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 4445555555555443221 1111223678888888876668999999999999999865543333332 57899999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhh---hH-HhHHHHHHHhccCCCh-HHHHHHHHHHHHHHhhC-hhhHhhhhhhHH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-PQQLSQCLPKIV 1501 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~---~v-~~llp~Ll~~L~~~~~-~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ii 1501 (2058)
++..++..||+.|.+|++.++..-+.. .+ -.++++++..+...+. ...+.+..+|..++.+. |..-...+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 999999999999999999998665542 23 4678888888876553 66778899999999886 444445567899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--h-H-HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh--hH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP--SL 1574 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~-i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~--~l 1574 (2058)
|.|..++.+.+++|..-||||+..+.+...+. . + ..++|.|...+..++..++ .|+.++|.+......... .-
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999998754322 1 1 5678999999998887776 688888762111111100 11
Q ss_pred hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
...+|.|...+. .+...+|++||.+++|++. +.++.+...++ .++|.|..++...+..+|..|+.|++.+...-..
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 235788888777 4555699999999999987 55555544444 7899999999999999999999999998865443
Q ss_pred c---Cc--cchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1653 E---NF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1653 ~---~~--~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
+ |+ ..+++.+.+.|. ..+...-..+..++..+...
T Consensus 398 ~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHHH
Confidence 3 22 358888888885 34443455666777666543
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.21 E-value=1.4e-06 Score=110.42 Aligned_cols=636 Identities=17% Similarity=0.167 Sum_probs=339.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHH--------HHHhhcC--C
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~--------~~w~~~~--~ 1126 (2058)
+.+..+|.+.+|+|.++|.+|+.+|...... ..+-..+.++ .+.++..-..|+.|. ..|..+. +
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~-----~~f~~aL~~v-a~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELT-----EGFGVALAEV-AANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccc-----hHHHHHHHHH-HhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 4577889999999999999999999987511 1122233333 244556666777764 3475421 1
Q ss_pred C----CCCC----H-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHH
Q 000143 1127 D----FGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2058)
Q Consensus 1127 ~----~~~~----~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~ 1196 (2058)
. ...+ + ..+++.+.+++..+|.+++.++..++. .+|+.|++++..+.+++.. .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 1 1111 3 566677789999999999999999975 5899999999999987642 22346678
Q ss_pred HHHHHHHhhhhhCCC--------ChHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHHHhhCcc-------chhhHH
Q 000143 1197 IALALHSAADVLRTK--------DLPVIMTFLISRALADTNADVRGR-----MLNAGIMIIDKHGRD-------NVSLLF 1256 (2058)
Q Consensus 1197 ~~~al~~l~~~~~~~--------~~~~l~~~Li~~~L~d~~~~VR~~-----al~a~~~~i~~~g~~-------~~~~Ll 1256 (2058)
++.++..+..-...+ ..+.+..... .....+...|.. ....+...+..++.. .+..++
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~--~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l 225 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFA--LTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQIL 225 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhh--hccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888876543211 1222222221 112222222222 223344445444321 233344
Q ss_pred HH----HHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchHHHHHHHHhhhCC--------------------
Q 000143 1257 PI----FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNT-------------------- 1311 (2058)
Q Consensus 1257 ~~----l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~-------------------- 1311 (2058)
+. |+..++.+.. .+...|.....++..+.+.++.. .|++..+++...+.+..
T Consensus 226 ~~~~~~l~h~l~~~~g---~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~ 302 (1005)
T KOG2274|consen 226 NQFMDILEHPLQRNDG---SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDAR 302 (1005)
T ss_pred HHHHHHHhhhhccccc---chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccc
Confidence 44 4444433222 22256777777777777766543 23444333333322200
Q ss_pred -CCHHHHHHHHHh-------hHhhHh------hcccchHHHHHHHH--HHHh----------------cC-CCHHHHHHH
Q 000143 1312 -PSEAVQRAVSSC-------LSPLMQ------SMQDEAPTLVSRLL--DQLM----------------KS-DKYGERRGA 1358 (2058)
Q Consensus 1312 -~~~~V~~av~~~-------L~~l~~------~~~~~~~~~v~~Ll--~~L~----------------~~-~~~~vR~~A 1358 (2058)
.+...+..+-.| +..++. .+....++.+..+. .++. ++ +.+..|..+
T Consensus 303 ~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~ 382 (1005)
T KOG2274|consen 303 YDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISV 382 (1005)
T ss_pred cCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhH
Confidence 000011111111 111111 11111222221111 1111 11 124667777
Q ss_pred HHHHHHHHhhhCccccchhchHHHHHH---------HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1359 AFGLAGVVKGFGISSLKKYGIAATLRE---------GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~~~~il~~L~~---------~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
...+-.++..+|...+. .+...... .+.++..|...++.+.+-+... .++....++..+.-.+...+
T Consensus 383 rd~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 383 RDLLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhc
Confidence 66677777777765543 22222111 1223334556665555544443 23323444444444444444
Q ss_pred CC-CCHHHHHHHHHHHHHHHHhh--hhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000143 1430 SD-QVVAVREAAECAARAMMSQL--SAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2058)
Q Consensus 1430 ~D-~~~~VR~aA~~al~~l~~~l--~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~ 1505 (2058)
.- +.|..--.+..++..++... .+.-...++...+..+. +.....|..|+.++...+ .++-+.+.+|.|+..|.
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHH
Confidence 33 34444446666666655442 22222444555555555 455667888888777654 56678888999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcCc-------hhHHhHHHHHHhccCCCChh--HHHHHHHHHhccccccCChhhHhh
Q 000143 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~-------~~i~~lvp~Ll~~l~d~~~~--vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
.+..+...+|-....++|...++.-.. ...+.++..+.+..+||.-. ++.++..+.+ .....+|....
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q---~~~~~g~m~e~ 613 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ---IAANYGPMQER 613 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHhhcchHHH
Confidence 999999999999999999888875221 11134445556667788321 1345555554 11223455566
Q ss_pred HHHHHHHhhcCCC----HHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh-hCCCCHHHHHHHHHHHHHHHHhhc
Q 000143 1577 LVPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMG 1651 (2058)
Q Consensus 1577 llp~L~~~L~d~s----~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~-l~d~~~~vR~~a~~aLg~l~~~lg 1651 (2058)
.+|.+...+..+. ......+..++..+.+. +.+.--.......+|.+.++ +...+-++-..+-+||.++...--
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 7888888776544 45566677788777763 33222222444567777665 444556677788888888886522
Q ss_pred cc----------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC-ChhHHHHHH
Q 000143 1652 EE----------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ-RASVRDGYL 1717 (2058)
Q Consensus 1652 ~~----------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~-~~~vR~~al 1717 (2058)
++ .+-.+|..+-+.|..+.+...-..+..-+..++...|.+ .++.++..++..+... ...+-+..+
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi 772 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLI 772 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 21 122566666555543333211111122234444445544 3455666665555443 444444445
Q ss_pred HHHHHh
Q 000143 1718 TLFKYL 1723 (2058)
Q Consensus 1718 ~~l~~l 1723 (2058)
..|..+
T Consensus 773 ~VfahL 778 (1005)
T KOG2274|consen 773 MVFAHL 778 (1005)
T ss_pred HHHHHH
Confidence 544444
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.03 E-value=6.8e-07 Score=116.09 Aligned_cols=402 Identities=16% Similarity=0.196 Sum_probs=253.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHH
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 1502 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip 1502 (2058)
++.++.+.+...-..++++++.++....+..+ ..+.+.+..+|.+++..+|..++..++.++.+....... .=..+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 77788877776667888999999988887764 888899999999999999999999999998765432211 1147899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~ 1582 (2058)
.+..++.|++..|.+.|..+|..++.. .+.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhC--------c--------------------------chHHHHH
Confidence 999999999999999999999999873 122222110 0 0133344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh--hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh-cccCc--cc
Q 000143 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2058)
Q Consensus 1583 ~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~--~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l-g~~~~--~~ 1657 (2058)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+++.-++..+.+.++.++..- |-+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777788888887763 2 23333433 37888888888888889999999999998621 11122 23
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ 1737 (2058)
+++.+.+.+.+..+.. |..+. .-.+.+..++.++..-...+....+.
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~--------------------------------~l~g~~~f~g~la~~~~~~v~~~~p~ 290 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSL--------------------------------LLPGRMKFFGNLARVSPQEVLELYPA 290 (503)
T ss_pred HHHHHHHHHhccccCC-cccch--------------------------------hhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 4444444443221110 11111 11233355555555433344444566
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---------cchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhC
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYAT---------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---------~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g 1808 (2058)
++..+...+...++..+..|+++++.+.....+ ..++.++..+-....+....+|..+++.++.++..
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~--- 367 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS--- 367 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc---
Confidence 777777778888899999999999987643221 12233444444445556677899999999998632
Q ss_pred CcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH--HHH
Q 000143 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVL 1886 (2058)
Q Consensus 1809 ~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L 1886 (2058)
..+..........+...+.++...... .++.....+-+.+|.++.++|..++. .+|..+.+. |.+
T Consensus 368 ---------~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~-~~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 368 ---------GTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAA-QPWGQREICSSPGF 434 (503)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhc-CHHHHHHHHhCccH
Confidence 011000001122333345555444432 23333566668999999999999986 467666654 455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1887 MNTLISSLASSSSERRQVAGRALGELVR 1914 (2058)
Q Consensus 1887 ~~~l~~~L~~~~~~~R~~A~~~Lg~L~~ 1914 (2058)
++.++..-.+++.+.+..=.+++..+++
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 6655544444555555555555555553
No 44
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=0.00044 Score=87.76 Aligned_cols=501 Identities=15% Similarity=0.169 Sum_probs=258.9
Q ss_pred HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
.+++.|+.++..-++...+.+.-++|..+....++ + ++ -..|...|+.+.-.+..
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~-~-------------~l-----------~~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA-T-------------VL-----------DKLKAQICEIFNLYATK 277 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccc-c-------------HH-----------HHHHHHHHHHHHHHHHh
Confidence 34567788888888888877765554433210000 0 00 12355667777777777
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHH--HHHHHHHHHHHhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHH
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR--~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~vr~al~~L 1560 (2058)
.++.+.+++++++...-.++.+..+..| .-++.|+.-+..+.+-+++ +.++..+.+...=|+-..|+.-..+
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeEl 357 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEEL 357 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHH
Confidence 7888889999999888888876554444 3455666666666655443 3344444444433433333211111
Q ss_pred HhccccccCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH-hhCC--CCHHHH
Q 000143 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVR 1636 (2058)
Q Consensus 1561 ~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~v-r~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~-~l~d--~~~~vR 1636 (2058)
| -..-+..+.+-++..+.++ |+.||+.+..+++.. +. .+.+.+..-+..++. ...+ .+|.-.
T Consensus 358 ----F--------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~f-e~-~vt~v~~~~v~~~l~~y~~nPS~nWk~k 423 (960)
T KOG1992|consen 358 ----F--------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNF-EG-QVTGVFSSEVQRLLDQYSKNPSGNWKKK 423 (960)
T ss_pred ----h--------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHHHHHHHhccCCCcccccc
Confidence 0 0113445566666555444 566888999999865 32 222222223333332 2233 478888
Q ss_pred HHHHHHHHHHHHhhccc---------------Cc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1637 SVAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1637 ~~a~~aLg~l~~~lg~~---------------~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
..++.-+.+++...+.. +| ..++|.|...=. ...+..+..+..-+-.+-+.+|++++-.++|.
T Consensus 424 d~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~ 502 (960)
T KOG1992|consen 424 DRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIYTFRNQLGKEHLMALLPR 502 (960)
T ss_pred chhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc-ccccchhhcccceeeeecccCChHHHHHHHHH
Confidence 88887777777643321 11 234444422000 12232344444434444456777788889999
Q ss_pred HHHhhccCChhHHHHHHHHHHHhHHHhch---------hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1701 Ll~~l~~~~~~vR~~al~~l~~la~~~g~---------~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
+.+.+..+..-|-..+..++..+...-++ ...||...++..+.+.+.-+...--+..++|+-+++......
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~ 582 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSA 582 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHh
Confidence 99999999999999999988877654333 456777777777777665332211122333433333222222
Q ss_pred c---hhchHHhHhhhc----CCC-CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH
Q 000143 1772 S---LPLLLPAVEDGI----FND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2058)
Q Consensus 1772 ~---l~~llp~L~~~l----~d~-~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~ 1843 (2058)
. .+.+++.|.+.+ +++ ++..-..-.+.+|-++... +..++.. .......+..++
T Consensus 583 i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t-~~~~~~~-----------vs~~e~aL~p~f------ 644 (960)
T KOG1992|consen 583 IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT-CKANPSA-----------VSSLEEALFPVF------ 644 (960)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-hccCchH-----------HHHHHHHHHHHH------
Confidence 1 122333333222 222 2333444455556554332 1111100 000001111111
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh----hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 000143 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2058)
Q Consensus 1844 ~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~----~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~ 1919 (2058)
-..+.+.....--.+..+++.++.... ..+.+++|.+++.-+......- -+..+.+..+.+.....
T Consensus 645 ------q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNi----palvrLl~aflk~g~~~ 714 (960)
T KOG1992|consen 645 ------QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNI----PALVRLLQAFLKTGSQI 714 (960)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCc----HHHHHHHHHHHhcCchh
Confidence 111111112222334556666665433 3444444443322211111110 12333344444432221
Q ss_pred -----hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1920 -----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1920 -----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.++.++..+.+.+.++..+ .+| .+-+..++...+...+.||+.++...+.+.++.+..
T Consensus 715 ~~~~~~l~~iLGifqkLiaSka~D-h~G-F~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 715 VEAADKLSGILGIFQKLIASKAND-HHG-FYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKT 777 (960)
T ss_pred hcccccchhHHHHHHHHhcCcccc-hhH-HHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCc
Confidence 2456777777777655432 333 344777888888888889999999999999876643
No 45
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.4e-05 Score=100.71 Aligned_cols=628 Identities=18% Similarity=0.204 Sum_probs=313.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC-
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD- 1127 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~- 1127 (2058)
+.+...|....+||+.+|..++++|+.....+ .+ ...++..+ +...-|+.+|-.|.. -|...+..
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~--~y--~l~lL~Lv--~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQQ--NY--PLLLLNLV--ANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccCC--Cc--hHHHHHHH--hccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 46777888899999999999999999875221 11 12222222 222336666655432 46543322
Q ss_pred --CC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhh-----------c----C--C
Q 000143 1128 --FG----TDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRD-----------I----G--L 1182 (2058)
Q Consensus 1128 --~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~-----------l----~--~ 1182 (2058)
.. +.+ ..++...-+....++....+++.-+++. .|+.|+.+++.|.+.+... + + .
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 11 223 3344444566788999999999988854 5777777777776554310 0 0 0
Q ss_pred CCCCCCCCchh-----------------------------------hHHHHHHHHHhhhhhCCCChHHH--------HHH
Q 000143 1183 GGDNVDAGWLG-----------------------------------RQGIALALHSAADVLRTKDLPVI--------MTF 1219 (2058)
Q Consensus 1183 ~~~~~~~~~~~-----------------------------------R~~~~~al~~l~~~~~~~~~~~l--------~~~ 1219 (2058)
....++.-|.. --++...+..+...+..+++|.+ +..
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 00000111110 00111111122222333333322 111
Q ss_pred HH---H---hhccCC--C----HHHHHHHHHHHHHHHHhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 000143 1220 LI---S---RALADT--N----ADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT 1284 (2058)
Q Consensus 1220 Li---~---~~L~d~--~----~~VR~~al~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~L 1284 (2058)
+. . ..+.+. + ..+|..+++........+.. ..+++++...+++|.. .+.+..+|.+..+|+.+|
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~-~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVS-TSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHH
Confidence 11 0 112221 1 13444555554444444432 3466777778888887 455567788989999999
Q ss_pred HHHHh--HhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhh------cccchHHHHHHHHHHHhcCCCHHHHH
Q 000143 1285 GALAK--HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLMKSDKYGERR 1356 (2058)
Q Consensus 1285 g~La~--~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~------~~~~~~~~v~~Ll~~L~~~~~~~vR~ 1356 (2058)
..+++ |+...- .-+.++..+.+.. |++.+.-. +.++-.+|++.-+ ..+|-..-|+
T Consensus 318 t~V~~r~~y~~~F-~~~~vl~~i~e~V-------------vlpN~~lR~eDeElFED~pleYiRRDl---EGsDvdTRRR 380 (960)
T KOG1992|consen 318 TSVSRRPHYAELF-EGENVLAQICEKV-------------VLPNLILREEDEELFEDNPLEYIRRDL---EGSDVDTRRR 380 (960)
T ss_pred HHHHhhhhhHhhh-cchHHHHHHHHhh-------------cccccccchhhHHHhccCHHHHHHHhc---ccCCcchhHH
Confidence 99985 332100 0112222222211 22222111 1112233444333 2333334466
Q ss_pred HHHHHHHHHHhhhCccccchhchHHH-----HHHHHhC-CCCHHHHHHHHHHHHHHHHHh-----c-----c--cchh-h
Q 000143 1357 GAAFGLAGVVKGFGISSLKKYGIAAT-----LREGLAD-RNSAKRREGALLAFECLCEKL-----G-----R--LFEP-Y 1417 (2058)
Q Consensus 1357 ~Aa~~L~~l~~~~g~~~l~~~~il~~-----L~~~l~~-~~~~~~R~~al~al~~L~~~l-----g-----~--~~~p-~ 1417 (2058)
+|+.-+.++.+.+..... .++.. +.+...+ ..||+..+.++..+..++-.- | . .... +
T Consensus 381 ~a~dlvrgL~~~fe~~vt---~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff 457 (960)
T KOG1992|consen 381 AAIDLVRGLCKNFEGQVT---GVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF 457 (960)
T ss_pred HHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence 677777778777633222 22222 2223333 458999999998888887542 1 0 1222 3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh---------
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--------- 1488 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~--------- 1488 (2058)
..+++|.|...-..+.|.++..+.+=+-.+-..+++...-..+|.+...+..+..-+-.-|+.++..+...
T Consensus 458 ~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if 537 (960)
T KOG1992|consen 458 ANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIF 537 (960)
T ss_pred HHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcccccc
Confidence 45677887765556678888777665555556667777788899999999887655444444444443322
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f 1565 (2058)
.+..+.++...++..+.+.++-+...=-+-..+|+.++....++ |+...+++.|.
T Consensus 538 ~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lt---------------------- 595 (960)
T KOG1992|consen 538 GAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLT---------------------- 595 (960)
T ss_pred chhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHH----------------------
Confidence 12345555555555555544433221112222333333322221 11111111111
Q ss_pred cccCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhh--CCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLV--TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~-s~~vr~~A~~~l~~L~~~l--~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.++....+++ ++.--..-.+.+|.+.... .++..+..+...++|.+...+..+..+.--.+..-
T Consensus 596 -------------eiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQl 662 (960)
T KOG1992|consen 596 -------------EIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQL 662 (960)
T ss_pred -------------HHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111122222222222211 12233445566777888877777666667777778
Q ss_pred HHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh---chh------HHHHhhHHHHHhhccCChhHH
Q 000143 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV------YFEHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1643 Lg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~---g~~------~l~~llp~Ll~~l~~~~~~vR 1713 (2058)
++.+++..+...-+.++| ++..|-+..-| .|.+-.-++-.+..++ |.. .+..++..+...+.++...
T Consensus 663 la~lve~~~~~ip~~~~~-l~~~lLsp~lW-~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D-- 738 (960)
T KOG1992|consen 663 LAVLVEHSSGTIPDSYSP-LFPPLLSPNLW-KRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND-- 738 (960)
T ss_pred HHHHHHhcCCCCchhHHH-HHHHhcCHHHH-hhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--
Confidence 888887665532222333 33334334444 4555444443333332 222 2233444333333333111
Q ss_pred HHHHHHHHHhHHHhch-hHHHhHHHHHHHHHHhccCCC
Q 000143 1714 DGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLADEN 1750 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g~-~f~pyl~~ilp~Ll~~L~d~~ 1750 (2058)
...+.++..+...+.. ...||+.++.-.+++.++...
T Consensus 739 h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 739 HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSK 776 (960)
T ss_pred hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccC
Confidence 2344556655555543 467899999999999987754
No 46
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.5e-06 Score=103.49 Aligned_cols=401 Identities=17% Similarity=0.136 Sum_probs=235.6
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
+.+...+++.+..+.... +..+++-.---|-+.++.-....+ --+.+++..+.|+ |+-.|..|+.++..|-
T Consensus 66 G~dvS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLAL---LSIntfQk~L~Dp-N~LiRasALRvlSsIR---- 136 (968)
T KOG1060|consen 66 GKDVSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLAL---LSINTFQKALKDP-NQLIRASALRVLSSIR---- 136 (968)
T ss_pred CCcHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCcee---eeHHHHHhhhcCC-cHHHHHHHHHHHHhcc----
Confidence 455778888888887655 466776655555555554333222 2367788889888 8999998888775541
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~ 1491 (2058)
+.-..+-++-.+-++..|..+.||..|+.|+..+-+ +.++.-.+++..+-..|.|.+.-+--+|+.++..++..--+
T Consensus 137 --vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld 213 (968)
T KOG1060|consen 137 --VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD 213 (968)
T ss_pred --hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH
Confidence 222233345556678899999999999999988853 44444456666666677788887777777766654422222
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-cCch-------------------------------hHHhHH
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-------------------------------EIASLV 1539 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~-~~~~-------------------------------~i~~lv 1539 (2058)
-+.+++.. ++..+-|-+..=+.-.+..|-+.+.. +.+| ++.-++
T Consensus 214 LIHknyrk----lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL 289 (968)
T KOG1060|consen 214 LIHKNYRK----LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL 289 (968)
T ss_pred HhhHHHHH----HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH
Confidence 23444333 44445554444444455555555542 1111 111111
Q ss_pred HHHHhccCCCChhHHHHHHHHHhccccccCChh-hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1540 p~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~-~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
...-..+...+..+--|.. + .|. ++..+ ....+...|.+.|.+.. +++....+.|..|+. ..+.-|.||+.
T Consensus 290 ~stkpLl~S~n~sVVmA~a---q-l~y-~lAP~~~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~--~~~~lF~P~lK 361 (968)
T KOG1060|consen 290 QSTKPLLQSRNPSVVMAVA---Q-LFY-HLAPKNQVTKIAKALVRLLRSNR-EVQYVVLQNIATISI--KRPTLFEPHLK 361 (968)
T ss_pred HhccHHHhcCCcHHHHHHH---h-HHH-hhCCHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHh--cchhhhhhhhh
Confidence 1111111111221110110 0 011 11111 34455666666665533 566666666666665 24444444443
Q ss_pred ------------------------------hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1619 ------------------------------LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1619 ------------------------------~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
.+++.++....+++.++-..+.+|+|..+...+.- -+.++.+|+..+.+
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-TDTCLNGLVQLLSS 440 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-hhHHHHHHHHHHhc
Confidence 24555556666777778889999999999877653 46799999999987
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
..+. +-..++..+-.++..-..++. +++..+...+..- -+.-|.++++++|..+..... ..+.++..+.+.+.
T Consensus 441 hde~-Vv~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs 514 (968)
T KOG1060|consen 441 HDEL-VVAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFS 514 (968)
T ss_pred ccch-hHHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhc
Confidence 6544 445555566555544333321 2344444444322 566788889999888775432 45667778888889
Q ss_pred CCCHHHHHHHHHHHHH
Q 000143 1748 DENESVRDAALGAGHV 1763 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~ 1763 (2058)
++.+.||-.++.-...
T Consensus 515 ~E~~evKlQILnL~aK 530 (968)
T KOG1060|consen 515 DEGDEVKLQILNLSAK 530 (968)
T ss_pred cccchhhHHHHHhhhh
Confidence 9999998877655443
No 47
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.89 E-value=0.0013 Score=84.72 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH--hchhHHHHhhHHHHHhhc
Q 000143 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCS 1706 (2058)
Q Consensus 1632 ~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~--~g~~~l~~llp~Ll~~l~ 1706 (2058)
.|....+...+...+. .|+. ++..++..+...+.....+..-..+...++.+... ..+..+..++......+.
T Consensus 423 ~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~ 500 (1005)
T KOG2274|consen 423 WWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALT 500 (1005)
T ss_pred HHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Confidence 3555555555554444 2221 33444444555555555554555667777766665 334445566665555544
Q ss_pred -cCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc---hhchHHhHhh
Q 000143 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS---LPLLLPAVED 1782 (2058)
Q Consensus 1707 -~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~---l~~llp~L~~ 1782 (2058)
+..+.+|.+++..+...+. ..-..++++.++..+++...+..++|-...++++..+++.-.+.. -..+.|.+..
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred cCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 4477888888888877662 223457888899999999998888898888999988775322211 1235555444
Q ss_pred hcC--CCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC----
Q 000143 1783 GIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV---- 1856 (2058)
Q Consensus 1783 ~l~--d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~---- 1856 (2058)
.+. .+++.+-..+-+++.+++... ...|+ .....++.+...+.-.
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~----------------------------~~~g~-m~e~~iPslisil~~~~~~~ 629 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIA----------------------------ANYGP-MQERLIPSLISVLQLNADKA 629 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHH----------------------------Hhhcc-hHHHHHHHHHHHHcCccccc
Confidence 331 122344444444444443210 11111 1112233333222111
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHH-HhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCc--------c--hhhch
Q 000143 1857 SLSVRQAALHVWKTIVANTPKTLK-EIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGE--------R--VLPSI 1924 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~~~l~-~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~--------~--~l~~l 1924 (2058)
.......|++++..++.++|..+. .+....++.+.++ +.+++.+.-+.+-+||..++....+ . .+-.+
T Consensus 630 ~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yI 709 (1005)
T KOG2274|consen 630 PAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYI 709 (1005)
T ss_pred CchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHH
Confidence 134556688899888888775543 3455666666665 4566778888899999988876221 1 13477
Q ss_pred HHHHhhhcCCCChh-HHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000143 1925 IPILSRGLKDPSAS-RRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2058)
Q Consensus 1925 lp~L~~~l~d~~~~-vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L-~D~d~~VR~~Aa~a~~~l~~~~g~~~~~ 2002 (2058)
+..+.+.|+-+..+ .-..+-.-+..++...|.+ +.+-+++++..+...+ .-....|-++-...|+.+... ..+
T Consensus 710 mqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e-l~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t----~~~ 784 (1005)
T KOG2274|consen 710 MQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE-LGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT----DLD 784 (1005)
T ss_pred HHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC----CHH
Confidence 77777777532221 1112222233455556543 5666677776666555 456788889999999888642 344
Q ss_pred HHHHHHHH
Q 000143 2003 EIVPTLLH 2010 (2058)
Q Consensus 2003 ~ilp~Ll~ 2010 (2058)
+++..|..
T Consensus 785 ~~l~FL~S 792 (1005)
T KOG2274|consen 785 QLLNFLSS 792 (1005)
T ss_pred HHHHHHHh
Confidence 55555554
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.84 E-value=3.8e-06 Score=109.15 Aligned_cols=385 Identities=18% Similarity=0.190 Sum_probs=238.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQ 1420 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~ 1420 (2058)
+++.+...+ ...-..++..|..+.....+..+ ...+.+++...+.++ ++.+|..++..++.+.+.-....+... ..
T Consensus 43 lf~~L~~~~-~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSN-REQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcC-hHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 555554443 22334555667777766554443 246788888888887 889999999988777654322111111 35
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+++.++.++.|++..|...|..++..++..-.... + ...++.+...+...+..+|.-+.+++..++...++.+....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999999999999999999999986533221 1 22266666666665667777788999999887776654432
Q ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhH--HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 -~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i--~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
..+++.+...+.+.+..||..|++.+..++..-.. .++ ..+++.+...+.+.....| .
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~------------------~ 261 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPR------------------L 261 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCc------------------c
Confidence 25899999999999999999999999999983211 233 3455555555544322110 0
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh-cc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l-g~ 1652 (2058)
...++|... ...|+++.. .+..+...++.++..+...+.+.++..+..|+.++|.++... |.
T Consensus 262 ~~~~l~g~~---------------~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 262 SSLLLPGRM---------------KFFGNLARV--SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred cchhhhhHH---------------HHHHHHHhc--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 111222211 356666663 444454556778888888888999999999999999998643 22
Q ss_pred cC--------ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH------------HHhhH-HHHHhhccC
Q 000143 1653 EN--------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF------------EHILP-DIIRNCSHQ 1708 (2058)
Q Consensus 1653 ~~--------~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l------------~~llp-~Ll~~l~~~ 1708 (2058)
.. +..++..+.....+ ...+.|..+..+++.+....... .+ ..-+. .++..++.|
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP 403 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP 403 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 21 12233333333332 33457888999999886543321 11 01111 456666677
Q ss_pred ChhHHHHHHHHHHHhHHHh-chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1709 RASVRDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1709 ~~~vR~~al~~l~~la~~~-g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
=+.+|.+++..+..++... |...---.+.++..++..-.+.+.+.++.=...++.+.
T Consensus 404 F~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 404 FPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999998888777642 11111111234444444444445555444444444444
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.6e-05 Score=99.55 Aligned_cols=491 Identities=15% Similarity=0.156 Sum_probs=262.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp 1461 (2058)
-|.+.+.+.++...+++--..++.++.+-. +..+.|.+.+.....+..|++-..-=|-+.+..-+.-.+ .-+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 355666666677777766666666766433 345556666677777788877654434333332221110 1134
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2058)
.+-+.|.|++.-+|..|+..+..|-- ....|-++-.+.++..|+.+.||+.|+.|+..+-..- ..+..+++..
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~ 184 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEV 184 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHH
Confidence 55667888888899888888876531 1112233334557778999999999999988886643 2334477777
Q ss_pred HHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHH---HHHhhcCC-CHHHHHHHHHHHHHHHhh-hCCCCc---
Q 000143 1542 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI---VHRGLRER-SAETKKKAAQIVGNMCSL-VTEPKD--- 1612 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~---L~~~L~d~-s~~vr~~A~~~l~~L~~~-l~~~~~--- 1612 (2058)
+-..+.|.+..|- .|+-++-. +....+..|-+. +.+++.|- +|. +......+...|+. +.+|..
T Consensus 185 I~~LLaD~splVvgsAv~AF~e------vCPerldLIHknyrklC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~ 257 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEE------VCPERLDLIHKNYRKLCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDS 257 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHH------hchhHHHHhhHHHHHHHhhccchhhhh-HHHHHHHHHHHHHhcCCCcccccc
Confidence 7778888776553 22222211 111223333332 22333332 222 11222222222221 001100
Q ss_pred ------------------hhh-----hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC
Q 000143 1613 ------------------MIP-----YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2058)
Q Consensus 1613 ------------------l~p-----yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d 1669 (2058)
-.| -+..++.....++...++.
T Consensus 258 ~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s----------------------------------- 302 (968)
T KOG1060|consen 258 SLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS----------------------------------- 302 (968)
T ss_pred ccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH-----------------------------------
Confidence 001 0111222222222223333
Q ss_pred CChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC
Q 000143 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
+-.++++.+-.++. ......+...+++.+. .++.+|..+++.+..++..-..-|.||+..+. +...
T Consensus 303 ----VVmA~aql~y~lAP---~~~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf------v~ss 368 (968)
T KOG1060|consen 303 ----VVMAVAQLFYHLAP---KNQVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFF------VRSS 368 (968)
T ss_pred ----HHHHHHhHHHhhCC---HHHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceE------eecC
Confidence 33333333222211 1122333444444333 24556666677777776666666777764321 1222
Q ss_pred CH-HHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHH
Q 000143 1750 NE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2058)
Q Consensus 1750 ~~-~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~ 1828 (2058)
++ .++.-=++.+..+ ..+..+..+++++...+.+.+.++...+++.+|.....+.
T Consensus 369 Dp~~vk~lKleiLs~L---a~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------------------- 424 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNL---ANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------------------- 424 (968)
T ss_pred CHHHHHHHHHHHHHHH---hhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---------------------
Confidence 22 2222222223333 2345677789999988888777888888999998753211
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~ 1908 (2058)
...+.++..|...+...+..|-..++.+++.++..-|....+++..+...+- .-..+.-|...+..
T Consensus 425 -----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lld---ti~vp~ARA~IiWL 490 (968)
T KOG1060|consen 425 -----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLD---TILVPAARAGIIWL 490 (968)
T ss_pred -----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh---hhhhhhhhceeeee
Confidence 1223445555554444456677778888999998777655556555554431 11234556666777
Q ss_pred HHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh-cCCCHHHHHHHH
Q 000143 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAG 1986 (2058)
Q Consensus 1909 Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L-~D~d~~VR~~Aa 1986 (2058)
+|+.|.. -.++.|+++-.+.+.+.++.+.+|..+...-..+... ..++ ...+...+.... -|.+-++|+.+-
T Consensus 491 ige~~e~-vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~-~~~~----~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 491 IGEYCEI-VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT-NIDQ----TKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred ehhhhhh-cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEe-chhh----HHHHHHHHHHHhccCCCcchhHHHH
Confidence 8887765 2345677777788888888888998766532223221 1222 234444455433 488888888774
No 50
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.81 E-value=3.2e-07 Score=118.88 Aligned_cols=295 Identities=19% Similarity=0.215 Sum_probs=206.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+++.+...+..=+....+-+|+..+..++..... +.-++.++|.++.++.|+...||..|..++..+.....+
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~----- 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD----- 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC-----
Confidence 4566666665544566777888877777776654 666788999999999999999999998888776432211
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
..+.+..-+-.-|+|.|..++.| ....||-+-+.+|+.+|...- .+..
T Consensus 496 -----------------------------~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 496 -----------------------------IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -----------------------------CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 11111111223578888999999 778899999999999997532 1111
Q ss_pred HHHHHHh--ccCCCChhHH------HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1538 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1538 lvp~Ll~--~l~d~~~~vr------~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
+...+-. .+++|+..+. .-+.+| ...+-..+..++.|.++-||+.-.+.|..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2455543210 111111 111233455667888889999999999999988765
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
.+. -+.+++.|...|+|.+|.+|.+-++.+..++--+|... -+-++|.|.+.|. |.+..+-..+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT-DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHh
Confidence 322 34588999999999999999999999888877778763 3458888888888 55555777888888877653
Q ss_pred --hchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1689 --LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1689 --~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
+.+.++.+++..+.-.+..|+..+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 22335667778888888999999999999999998888765
No 51
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.81 E-value=1.2e-05 Score=104.92 Aligned_cols=237 Identities=17% Similarity=0.181 Sum_probs=136.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCHHhHH
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLF 1136 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~~~ll 1136 (2058)
..+..|+..+.+|.|++|+.+--+|.++......+.. + +. =++-.+|.+.....+ .+-
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~----~--~~-----led~~~rll~v~~Ld-----------rf~ 134 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLS----Y--EL-----LEDLLIRLLCVLALD-----------RFG 134 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhh----H--HH-----HHHHHHHHHHHHHHH-----------Hhc
Confidence 3677888999999999999999999887633322221 1 00 011112222222111 122
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCCh-
Q 000143 1137 KALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDL- 1213 (2058)
Q Consensus 1137 ~~l~-~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~- 1213 (2058)
+++. +-...||++.+++|++..+. .++.+...+.-+..... .+.|+.|+|.+.++++..... .+..
T Consensus 135 dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~----------q~~w~ir~Ggll~iky~~air-~d~l~ 203 (1549)
T KOG0392|consen 135 DFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLR----------QPNWEIRHGGLLGIKYNVAIR-QDLLF 203 (1549)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHc----------CcchhheechHHHHHHHHHHH-HHHHH
Confidence 3333 34679999999999999875 34455555555555432 247999999999999886632 2222
Q ss_pred ---HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 000143 1214 ---PVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2058)
Q Consensus 1214 ---~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~L 1287 (2058)
+.++++.+ .++.|.+.+||..+......+.... ....+..+...++..+..-+. ... -...-+..+..+
T Consensus 204 ~~~~~vl~~~i-~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~---s~~si~~ll~~l 278 (1549)
T KOG0392|consen 204 QLLNLVLDFVI-EGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSS---STASIMHLLDEL 278 (1549)
T ss_pred HHHHHHHHHHH-hhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cch---hhHHHHHHHHHH
Confidence 34455554 6899999999999987755444333 122344444444443332100 000 011123333344
Q ss_pred HhHh-----ccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc
Q 000143 1288 AKHL-----AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2058)
Q Consensus 1288 a~~l-----~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~ 1331 (2058)
+.+. ......-..++++++..+++.-..|+.++.+.+..|...-
T Consensus 279 ~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 279 CIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3222 1100111356788888888877788888887777776543
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.80 E-value=1.9e-07 Score=109.54 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=131.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHH-------HHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR-------EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~-------~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
..+.+|..|..|...|..++.+...... ...+++.+. ..+.|. ...+-..|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4567899999999999999987621111 113333333 333333 4456677889999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH-HHHHHHhccCCChHHHHHHHHHHHHHHhhCh---hhHhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l-lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2058)
.++|.++..++|....+|.+|..++..++...+ ....+ ++.+...+.++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998776 11234 6777788899999999999999999988777 34433
Q ss_pred --hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1496 --~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
.++.+++.+.++++|+++.||.+|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877653
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.79 E-value=2.1e-07 Score=109.17 Aligned_cols=200 Identities=24% Similarity=0.328 Sum_probs=137.9
Q ss_pred chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhc
Q 000143 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2058)
Q Consensus 1775 ~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~ 1854 (2058)
.+.+.+...-.+.+|..|..++.-+..++... .. ......+.+.+. .++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~----------------~~~~~~~~~~l~-----~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--AP----------------EDFPPDFVECLR-----QLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHHH--------HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--Cc----------------cccHHHHHHHHH-----HhHHHHHHHHh
Confidence 34555544457789999999999998886421 00 000011111111 33345555666
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhch-HHHHhhhcC
Q 000143 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2058)
Q Consensus 1855 D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~l-lp~L~~~l~ 1933 (2058)
|....|-..|+.+++.++...+..+.++++.+++.+++.+++++..+|..|..||..++..++ +.+.+ .+.+..+.+
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 766778888999999999999989999999999999999999999999999999999999776 33455 777788889
Q ss_pred CCChhHHHHHHHHHHHHHHhhC--hhhhHh--HHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh
Q 000143 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2058)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~~--~~~l~~--~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~ 1999 (2058)
+.++.+|..++..+..++...+ ...+.. +++.+.+.+.+.+.|++++||++|..+|..+.+..|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999998887 233332 34789999999999999999999999999999988764
No 54
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4.9e-07 Score=103.01 Aligned_cols=344 Identities=17% Similarity=0.128 Sum_probs=221.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh--H--
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V-- 1456 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~--v-- 1456 (2058)
.+...+++. ++....++..++|.++-..+.. +---+..+=+.+.+.++| ...||..+..|+..++.. +... +
T Consensus 89 pvl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~ 165 (550)
T KOG4224|consen 89 PVLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIAR 165 (550)
T ss_pred HHHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhh
Confidence 333444554 5666666777777776555421 111122333456666766 456777778888777654 3222 2
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
...+.++...-++++-++|..+..+|.+|-......-.-....-+|.|..++...++.||..|+.+++.++-.-.+
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~---- 241 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA---- 241 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH----
Confidence 2334555554457788899988888888875432221111235678889999999999999999999999753211
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
| ..|.+ +-..++|.+...+.+.++.++-+|.-++++++. +.+...+.
T Consensus 242 -----------------R---k~Laq----------aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas---dt~Yq~ei 288 (550)
T KOG4224|consen 242 -----------------R---KILAQ----------AEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS---DTEYQREI 288 (550)
T ss_pred -----------------H---HHHHh----------cccchHHHHHHHHhCCChHHHHHHHHHHhhhcc---cchhhhHH
Confidence 1 01111 112366777777788888888888888888875 22222333
Q ss_pred Hh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1617 IG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1617 l~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+ .-+|.+.++++++.-..-.....|+-.+.-+-+.+ .-..++..|...|...++.+.+..+...|-.++......
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 22 45788999999887666566666776665544443 113467778888876556657777777776666533222
Q ss_pred ---HH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1693 ---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1693 ---~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
.. ..-+|.+...+.|..-.+|+..-.|+..++.. +.+..|+ ..++|.++....+++++||..+..|+..+..
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 11 34677888888888888888887777776543 3333333 3488999999999999999999999987754
Q ss_pred H
Q 000143 1767 H 1767 (2058)
Q Consensus 1767 ~ 1767 (2058)
.
T Consensus 447 ~ 447 (550)
T KOG4224|consen 447 D 447 (550)
T ss_pred h
Confidence 3
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.78 E-value=4.7e-07 Score=102.24 Aligned_cols=309 Identities=15% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---hCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~---~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
..-+|.+.+.+..+ |......|.+-+..++.. .++..+....++|.+.+.+.+....-..-.|..++..++.+...
T Consensus 70 ~~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 70 YSELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hhhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence 33456666666554 344455555555444432 11222223366777777774332333344566778788765442
Q ss_pred cchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hH-HhHHHHHHHhccCCCh--HHHHHHHHHHHHH
Q 000143 1413 LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGAM 1485 (2058)
Q Consensus 1413 ~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v-~~llp~Ll~~L~~~~~--~~R~~a~~~Lg~l 1485 (2058)
.-.-.+ ...+|.++..+.+.+..||+.+.++|+.++..-+.. .+ -..+.+++..+.+... ..-+.+...|+.+
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 111111 247899999999999999999999999997554432 12 3456677776665443 4445688899999
Q ss_pred HhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-----HhHHHHHHhccCCCChhHH-HHHH
Q 000143 1486 AYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTK-YSLD 1558 (2058)
Q Consensus 1486 a~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~lvp~Ll~~l~d~~~~vr-~al~ 1558 (2058)
+.+- |..-...+...+|.|.+++...+++|-.-||||+.-+...-. +.+ ..+.+.|++++..|+..++ .++.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 9873 332344566888999999998899999999999999987432 222 2345668888888876665 5777
Q ss_pred HHHhccccccCChhh--HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh-hhhHHHHHhhCCCCHHH
Q 000143 1559 ILLQTTFVNTVDAPS--LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEV 1635 (2058)
Q Consensus 1559 ~L~~~~f~~~~~~~~--l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~v 1635 (2058)
..+.+--....+... -.-.++.+...|..+...+|+++|..+.++.. +..+.+....+ .++|.|..++...+..+
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 776521111111000 01245666666777777999999999999865 33333333332 68899999999888999
Q ss_pred HHHHHHHHHHHHH
Q 000143 1636 RSVAARAIGSLIR 1648 (2058)
Q Consensus 1636 R~~a~~aLg~l~~ 1648 (2058)
|..|..|+.....
T Consensus 386 kKEACWAisNats 398 (526)
T COG5064 386 KKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887664
No 56
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.76 E-value=0.0032 Score=81.35 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL 1916 (2058)
Q Consensus 1838 g~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l 1916 (2058)
.+.+|.++.+.+..........+|..-+..+..+..+.|. .+.+.+|.++|.+++++.-++.++|..+.+++..+....
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 4556677777777665544556677777778888888884 567899999999999999999999999999999988876
Q ss_pred Cc---chhhchHHHHhhhcCCCC---hhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1917 GE---RVLPSIIPILSRGLKDPS---ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2058)
Q Consensus 1917 g~---~~l~~llp~L~~~l~d~~---~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~ 1990 (2058)
+. ..+..++|.+...-.|.+ ..+|..+..+|+.+.+..+...+.+|.+.++..+.+.|.|+..-||..|..+=+
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 63 357889998887666554 569999999999888888888889999999999999999999999999988755
Q ss_pred HHH
Q 000143 1991 TLF 1993 (2058)
Q Consensus 1991 ~l~ 1993 (2058)
...
T Consensus 1021 ~W~ 1023 (1030)
T KOG1967|consen 1021 NWY 1023 (1030)
T ss_pred hhh
Confidence 543
No 57
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.74 E-value=0.0056 Score=82.88 Aligned_cols=151 Identities=18% Similarity=0.277 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCCh
Q 000143 1396 REGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAW 1472 (2058)
Q Consensus 1396 R~~al~al~~L~~~--lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~ 1472 (2058)
+..+...+-.++.. +...|++|+. .++..++.+...+|-.|..|+..++..-+.--. +.+...+..++.|..-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk----~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLK----LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchh
Confidence 44444444444432 2234555554 455667788899999999999999754332111 5667777888999999
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhHHHHHHhccCCCCh
Q 000143 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
.+|.+|++++|.+.-+.|+-..+|... +.+...|+...||+.+++-+..+++..++ +.+..+.-.++....|...
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qyY~~----i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQYYDQ----IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchh
Confidence 999999999999998877766666555 44567899999999999999999986543 2233444445556667655
Q ss_pred hHH
Q 000143 1552 HTK 1554 (2058)
Q Consensus 1552 ~vr 1554 (2058)
.+.
T Consensus 946 ~I~ 948 (1692)
T KOG1020|consen 946 NIK 948 (1692)
T ss_pred HHH
Confidence 444
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.2e-06 Score=99.84 Aligned_cols=342 Identities=15% Similarity=0.097 Sum_probs=222.2
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh-
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE- 1534 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~- 1534 (2058)
+....+++..+.+.+.....++..++|.++-.... .+...+..+=+.+.++..| +..||..+..|+-.++..-.+..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence 44556667777888889999999999998865432 2333344544556666666 67889988899888887643321
Q ss_pred H---HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1535 I---ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1535 i---~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
+ ..+.| +.+.-...+..+| .+..+|...+...+-- .-..+--+|++...++..+.++++.++..+++++---..
T Consensus 163 iA~sGaL~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 163 IARSGALEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhhccchhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 1 22333 2332222233343 5666665422211100 001122468899999999999999999999999742112
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-----cchHHHHHhhcccCCChHHHhhHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-----~~llp~L~~~L~~d~~~~~R~~aa~~L~~ 1684 (2058)
.+.+..--|.++|.|..++.|+++.++-.|..|++.++.. .+|. ..-+|.+++.++++..+ .-.....|+-.
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrn 318 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRN 318 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhh
Confidence 2334444567999999999999999999999999998752 2222 34678888888754443 44444555544
Q ss_pred HHHHhchhHH---HHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhH-HHHHHHHHHhccCCCHHHHHHHHH
Q 000143 1685 VLAALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALG 1759 (2058)
Q Consensus 1685 i~~~~g~~~l---~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl-~~ilp~Ll~~L~d~~~~VR~~a~~ 1759 (2058)
+.-.-+.+.+ ..++..+...+.-. +.+.+-.+...+.+++.........+. ...+|.+...+-|..-+||.....
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 4333333311 23555566666544 556888889999999876554433333 347888888888888889988777
Q ss_pred HHHHHHHH--hcccchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1760 AGHVLVEH--YATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1760 al~~lv~~--~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
++..+.-+ ......+ .++|.|.....+.+..+|-.+...++.+-
T Consensus 399 c~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 399 CIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 77765422 2222222 27788888888999999999999998873
No 59
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=0.0045 Score=82.15 Aligned_cols=775 Identities=16% Similarity=0.161 Sum_probs=370.2
Q ss_pred ccchHhHHHHHHhhhhhcccCCCCCccchHhhHHHHHHHHcCCC-CCCchhhHHHHH------HhhcCC-----CCCCcH
Q 000143 955 NKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPK-RTGLHDDVLQML------YKHMDP-----LLPLPR 1022 (2058)
Q Consensus 955 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-----~~~~~~ 1022 (2058)
.|.+..++.+-.||+..- +..-=++.++..++=++..-..+-. ..+....-|+.+ +.|... -..+--
T Consensus 190 ~e~flsl~~~~~yrllEn-~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~ 268 (1251)
T KOG0414|consen 190 DEDFLSLIVDPIYRLLEN-EHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGS 268 (1251)
T ss_pred HHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456788889999988876 2223355666666655554443311 111122223333 233311 123333
Q ss_pred HHHHHHHHHHHcc------ccchHHHHHHHHHHHHhcCC---hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccc--cCC
Q 000143 1023 LRMISVLYHVLGV------VPSYQAAIGSALNELCLGLQ---PNEVASALHGVYTKDVHVRMACLNAVKCIPAVS--TRS 1091 (2058)
Q Consensus 1023 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~--~~~ 1091 (2058)
..++..++.-++. ++..-+.....|.+++.-+. ..++..++.-+-+..-..|.+.++.+.+..... +.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 4555666655542 34556667778888776533 357777777556678889999999987764221 111
Q ss_pred C-----CchhhhhhHhhhhcCCCchHHHHHHHHHHhhcC--CCCC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1092 L-----PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYG--YDFG----TDY-SGLFKALSHSNYNVRLAAAEALATALD 1159 (2058)
Q Consensus 1092 ~-----~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~--~~~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~ 1159 (2058)
. .....+...+.--.+|-..-+|--+-++|...- ...+ .++ ...+.-+.|.+..||+.|.+.+..+..
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 1 001124444444567888888888888997721 1122 233 455567789999999999999999998
Q ss_pred hCCCch---HHHHHHHHHHHHhhcC----CCCC-CCCCCchhhHHHHHHH---HHhhhhhCCC-------ChHHHHHHHH
Q 000143 1160 EYPDSI---QGSLSTLFSLYIRDIG----LGGD-NVDAGWLGRQGIALAL---HSAADVLRTK-------DLPVIMTFLI 1221 (2058)
Q Consensus 1160 ~~~~~~---~~~l~~L~~~~~~~l~----~~~~-~~~~~~~~R~~~~~al---~~l~~~~~~~-------~~~~l~~~Li 1221 (2058)
.+|=.- ...+..-.+.+.+++. +... ..++....|......+ +.....-... ..+..- .+-
T Consensus 429 ~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~-~~~ 507 (1251)
T KOG0414|consen 429 RHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC-LLE 507 (1251)
T ss_pred cCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhhh-hhh
Confidence 887311 1111111222222211 1100 0001111121110000 0000000000 001111 110
Q ss_pred HhhccCC--CHHHHHHHHHHHHHHHH-hhC-ccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc
Q 000143 1222 SRALADT--NADVRGRMLNAGIMIID-KHG-RDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2058)
Q Consensus 1222 ~~~L~d~--~~~VR~~al~a~~~~i~-~~g-~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~ 1297 (2058)
..-...+ +..++..+ ...+.. ... ...+...+|++.++|-.. .. + .|.+ ++.++. .|..+.-+.
T Consensus 508 ~~~~s~~~~~~i~q~~~---~vq~l~d~~sf~~~ms~~~~ii~~ll~s~-t~--t--eV~E-~Idfl~-~c~~F~I~g-- 575 (1251)
T KOG0414|consen 508 NEVESVPAENEIMQLKA---LVQFLEDAISFSDEMSEAIPIISQLLFSK-TT--T--EVKE-AIDFLV-RCKQFGIDG-- 575 (1251)
T ss_pred hhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ch--H--HHHH-HHHHHH-HHHHhCCCc--
Confidence 0001111 11122211 111111 110 123566778888877652 11 1 3433 455443 344443222
Q ss_pred hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc
Q 000143 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS 1372 (2058)
Q Consensus 1298 i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~ 1372 (2058)
-..-+.+|+...-.++.+++.++..|.-.+.-..++. ....+..++..+.. .+.+.+-+--+.+..++..-.++
T Consensus 576 ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~-~s~~d~~slE~vl~~lv~~~~Id 654 (1251)
T KOG0414|consen 576 AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLID-ASIGDLTSLEEVLCELVARGYID 654 (1251)
T ss_pred HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHhCCCcc
Confidence 2344566666666666678998888877766443221 12334444444333 23444444444555555432221
Q ss_pred ccchhchHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1373 SLKKYGIAATLREGL--ADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1373 ~l~~~~il~~L~~~l--~~~~-~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
..++..|-+.. +-.. ....+.+++..++.++.+-.......+..++. ..+++ +..-.-++....-++.
T Consensus 655 ----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~---iglg~--p~l~~~~L~~~s~i~~ 725 (1251)
T KOG0414|consen 655 ----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQ---IGLGE--PRLAVDVLARYSNIVD 725 (1251)
T ss_pred ----HHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHH---hccCc--HHHHHHHHHHHHHhhc
Confidence 13344443322 1111 22344667777777766543322222222221 13333 2221112111111110
Q ss_pred -hhh------------h-hhHHhHHHHHHHh--cc-CCChH-HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH----H
Q 000143 1450 -QLS------------A-QGVKLVLPSLLKG--LE-DKAWR-TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE----V 1507 (2058)
Q Consensus 1450 -~l~------------~-~~v~~llp~Ll~~--L~-~~~~~-~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~----~ 1507 (2058)
+.+ . +.+-..+..++.. +. +.+|. +...|+.++..++. .|+.+.. .|+..+.. .
T Consensus 726 ~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~Pe~la~---~li~~~~~~~f~~ 801 (1251)
T KOG0414|consen 726 PRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-LPEVLAT---QLIRKLLKQDFES 801 (1251)
T ss_pred ccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-ChHHHHH---HHHHHHHHHHhhh
Confidence 111 0 1112233333322 22 34564 56667888888776 3544332 12222111 1
Q ss_pred h--------cCCC-----HHHHHHHHHHHHHHHhhc-C-chhHHhHHHHHHh---------ccCCCChhHHHHHHHHHh-
Q 000143 1508 L--------TDTH-----PKVQSAGQTALQQVGSVI-K-NPEIASLVPTLLM---------GLTDPNDHTKYSLDILLQ- 1562 (2058)
Q Consensus 1508 L--------~D~~-----~~VR~aA~~aL~~l~~~~-~-~~~i~~lvp~Ll~---------~l~d~~~~vr~al~~L~~- 1562 (2058)
+ .|++ ..+|.....-+.-+|.+. . .-|++.-++.-++ .-.|.+ .++-+....+
T Consensus 802 ~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e~k~~N--~~e~~s~t~~~ 879 (1251)
T KOG0414|consen 802 LECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEEKKDKN--QRENLSNTQRE 879 (1251)
T ss_pred hhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--chhhhcccccc
Confidence 1 1111 111111111111111110 0 1122222221110 000000 0000000000
Q ss_pred ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh---hCCCCchhhhHhhhhHHHHHhhC----CCCHHH
Q 000143 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL---VTEPKDMIPYIGLLLPEVKKVLV----DPIPEV 1635 (2058)
Q Consensus 1563 ~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~---l~~~~~l~pyl~~ll~~L~~~l~----d~~~~v 1635 (2058)
+.+-... ....+.+.+.- .+.+..+|+. .++ ...+..+.|.+.+.+. -.+|++
T Consensus 880 ~~~~~e~-------------dlig~tseDd~---~d~i~~icE~eLl~ge----k~lLg~f~piv~e~c~n~~~~sdp~L 939 (1251)
T KOG0414|consen 880 TQFTVEL-------------DLIGGTSEDDL---ADLISGICEKELLYGE----KSLLGRFAPIVVEGCRNPGLFSDPEL 939 (1251)
T ss_pred ccCCccc-------------cccCCCcchhH---HHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHhcCCCcCCCHHH
Confidence 0010000 00111111111 1222333321 111 1234455666666664 346899
Q ss_pred HHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
+.+|.-|+|.+.. +..++...-+|.|+..+...+.+.+|..+..++|+++-.+.. .++..-+.+++.+.|.++.||..
T Consensus 940 q~AAtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn-lie~~T~~Ly~rL~D~~~~vRkt 1017 (1251)
T KOG0414|consen 940 QAAATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN-LIEPWTEHLYRRLRDESPSVRKT 1017 (1251)
T ss_pred HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-ccchhhHHHHHHhcCccHHHHHH
Confidence 9999999998874 334456677888999998778888999999999988755432 46777788999999999999999
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCC
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~ 1787 (2058)
++..+.++...---. ....++-+-.++.|+++.||+-|-.-++.+.... ..+-.++|.+...+.|.
T Consensus 1018 a~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1018 ALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 998888775532111 1223566777899999999998877666664332 34555788887777665
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.67 E-value=4.4e-07 Score=102.51 Aligned_cols=306 Identities=15% Similarity=0.153 Sum_probs=200.2
Q ss_pred HhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--
Q 000143 1457 KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 1532 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-- 1532 (2058)
..++|.+.+.+++. .--.+..|..+|..++.+...+..-.. ...+|.++++|.+++..||+++.|||+.++.....
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 35678888888543 344567899999999988766533211 25789999999999999999999999999865331
Q ss_pred hhH--HhHHHHHHhccCCCCh---hHHHH---HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1533 PEI--ASLVPTLLMGLTDPND---HTKYS---LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1533 ~~i--~~lvp~Ll~~l~d~~~---~vr~a---l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
.++ ...+..++..+..... .+|.+ +..+...+ -+.-+-..+...+|+|.+++-.+++++-..||.++..+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 122 1223333333332222 23533 33333211 122233456778999999999999999999999998886
Q ss_pred hhhCCCCchhhhHh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHH
Q 000143 1605 SLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa 1679 (2058)
.. ..+.+...++ .+.+.|.+++..++..+..-+.+++|.++.+-..+ .--.+++.+...|.+.. ...|..++
T Consensus 272 Dg--~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaC 348 (526)
T COG5064 272 DG--PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEAC 348 (526)
T ss_pred cC--cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhh
Confidence 52 2222222333 46778999999999999999999999998754333 11245566655566444 46899999
Q ss_pred HHHHHHHHHhchh--H-H-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh-c-hhHHHhH--HHHHHHHHHhccCCCH
Q 000143 1680 QGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-G-VQFQNYL--QQVLPAILDGLADENE 1751 (2058)
Q Consensus 1680 ~~L~~i~~~~g~~--~-l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~-g-~~f~pyl--~~ilp~Ll~~L~d~~~ 1751 (2058)
+.++.+..+-... . + ..++|.++..+...+..+|..+++++.+..... + ++...|+ ..++.++...|.-.+-
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 9999886554332 1 1 357899999999889999999999987764422 1 2333444 2356666666654333
Q ss_pred HHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~ 1766 (2058)
.+-+.+++++..+.+
T Consensus 429 kiiev~LD~~eniLk 443 (526)
T COG5064 429 KIIEVALDAIENILK 443 (526)
T ss_pred cchhhhHHHHHHHHh
Confidence 345555666665543
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.67 E-value=1.6e-06 Score=112.54 Aligned_cols=299 Identities=19% Similarity=0.155 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-------chhchHHhHhh
Q 000143 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-------SLPLLLPAVED 1782 (2058)
Q Consensus 1710 ~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-------~l~~llp~L~~ 1782 (2058)
...|..++.++..++.....+ .-++.++|.++.++.|+...||-.|+.++..++....+- ..+.++|.|..
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 456778888888888877664 478899999999999999999999999999887765432 23568999999
Q ss_pred hcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHH
Q 000143 1783 GIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2058)
Q Consensus 1783 ~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR 1861 (2058)
++.| ....+|.+-...++.|.....+ -+. ++.+.++ .. +.+|.+..
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~r-----------------------Fle--~~q~~~~---~g---~~n~~nse-- 561 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYR-----------------------FLE--LTQELRQ---AG---MLNDPNSE-- 561 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHH-----------------------HHH--HHHHHHh---cc---cccCcccc--
Confidence 9988 6778888888888887522110 000 0000000 00 01111110
Q ss_pred HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHH
Q 000143 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRR 1940 (2058)
Q Consensus 1862 ~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR 1940 (2058)
...-.+....+.....++-+.....+.|+...+|++-.+.++.||..+|.. .-.-++++|...|+|++...|
T Consensus 562 -------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 562 -------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred -------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
Confidence 000001112223333334444445578888899999999999999999855 456788999999999999899
Q ss_pred HHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHhcCCCc--
Q 000143 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQ-- 2016 (2058)
Q Consensus 1941 ~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g--~~~~~~ilp~Ll~~L~~~~-- 2016 (2058)
......+..+....|...+. +.++|.|.+++.|+++.|-..|.++|..+++..- +.++-+++...+..|--|+
T Consensus 635 ~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~W 711 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLW 711 (1431)
T ss_pred HHHHhhccceEEEEeeeeHH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHH
Confidence 87666555454555655444 4578999999999999999999999999987532 4566677776666666666
Q ss_pred chHHHHHHHHHHHhhcC-----CccchhhhhhhccCCCchhh
Q 000143 2017 TSDTALDGLKQILSVRT-----TAVLPHILPKLVHLPLSYVS 2053 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~~~-----~~~lp~lip~L~~~p~~~~~ 2053 (2058)
.|..++.-+..+.+.-+ -.+.|.+=|=|.+++++.+.
T Consensus 712 IR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s 753 (1431)
T KOG1240|consen 712 IRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIES 753 (1431)
T ss_pred HHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcc
Confidence 46667776666654332 25677766666666666554
No 62
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.60 E-value=0.0086 Score=77.57 Aligned_cols=121 Identities=25% Similarity=0.346 Sum_probs=101.4
Q ss_pred cchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2058)
Q Consensus 1918 ~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g 1997 (2058)
++++.++.|.+.+.+.......|.+-..+|..++.+.+.+.+.|.++.++|.+.+++.-+|..||-.+..+|..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 34678899999999986667789999999999999999999999999999999999999999999999999988876655
Q ss_pred ---hhhHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHhh-cCCccch
Q 000143 1998 ---MQAIDEIVPTLLHALEDDQ-----TSDTALDGLKQILSV-RTTAVLP 2038 (2058)
Q Consensus 1998 ---~~~~~~ilp~Ll~~L~~~~-----~~~~al~aL~~i~~~-~~~~~lp 2038 (2058)
..+++.++|.++..=.|++ .|+.|+.+|..+.+. .....+|
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 3689999999997655544 478999999999883 3344444
No 63
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.0014 Score=82.07 Aligned_cols=307 Identities=16% Similarity=0.212 Sum_probs=192.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
..+-+-++..++...+.||..|.-.+-.+.-.++ +.++.-+|.+.+.|+|+++.+..+|+..+..++...|+..-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 4677888889999999999999999888887765 45777889999999999999999999999999988886433
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhcC-chhH-HhHHHHHHhccCCCChhH--HHHHHHHHhcccccc--CC
Q 000143 1499 KIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVNT--VD 1570 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~-~~~i-~~lvp~Ll~~l~d~~~~v--r~al~~L~~~~f~~~--~~ 1570 (2058)
++-|.+++++.++ ++.. +..+.-|+.... +|-+ +.++|.+...+....... =+|+++++....... ..
T Consensus 218 ~LAP~ffkllttSsNNWmL----IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVL----IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred cccHHHHHHHhccCCCeeh----HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 4556677776543 3332 334444444332 3443 677777777765443211 267777765422222 23
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
..+....+.-|.-.+.|.+++.|+-++-+++.++. +.|..+..+ -..++.++.|.++.+|-.|..-+..++
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmV--- 364 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMV--- 364 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHh---
Confidence 34455566667777889999999999988888887 344443333 345677889999999988777766665
Q ss_pred cccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhH---HHHHHHHHHHhHHHh
Q 000143 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV---RDGYLTLFKYLPRSL 1727 (2058)
Q Consensus 1651 g~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~v---R~~al~~l~~la~~~ 1727 (2058)
.++.+-+++..||..+...+...-| ++++..++..+...++.. =+..+..+..++...
T Consensus 365 skkNl~eIVk~LM~~~~~ae~t~yr-------------------dell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~ 425 (877)
T KOG1059|consen 365 SKKNLMEIVKTLMKHVEKAEGTNYR-------------------DELLTRIISICSQSNYQYITDFEWYLSVLVELARLE 425 (877)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHH-------------------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhcc
Confidence 3445566777777766532222222 333333333332221111 134455666666655
Q ss_pred chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1728 GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1728 g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
|.+ +-..+-..++. +.-..+.+|..+...+..++.
T Consensus 426 ~~~---~G~~I~eQi~D-v~iRV~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 426 GTR---HGSLIAEQIID-VAIRVPSIRPFSVSQMSALLD 460 (877)
T ss_pred ccc---hhhHHHHHHHH-HheechhhhHhHHHHHHHHHh
Confidence 532 11222222222 222356677777666665554
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00067 Score=86.22 Aligned_cols=304 Identities=16% Similarity=0.207 Sum_probs=194.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+...+-+.++.++..|--.|..+++.+ .+++-.+.+.|.+.+.++..+..+|+-|+.+...+....|+.++. +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----F 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----h
Confidence 344555566667777777777777666 456666788888888888888888888888888888888776653 4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccc-----cccCChhh
Q 000143 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF-----VNTVDAPS 1573 (2058)
Q Consensus 1501 ip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f-----~~~~~~~~ 1573 (2058)
++...+.|.|.|+-|-.++..-+-.+++.-.+ .++..++|.++..+.+ +....+ ++.+..|.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~-----------l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQ-----------LTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-----------HhcCCCCCccCccCCCchH
Confidence 55566778888888888888877777775332 2456666666654432 111111 22344455
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+..-+=.+.+.+...+.+....-..+++.++..-...+... + -.+.+++...+. ++++..|..|+.+||.+...-..
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G-n-AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG-N-AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch-h-HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcc
Confidence 54333344555655555566666667777765321111111 1 135556655554 67888999999999988753222
Q ss_pred cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1653 ~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
...---+..|+..++.|+....|. -..+++.++|++..+|..++.+.-.+...-
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~~----- 381 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNES----- 381 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhccc-----
Confidence 111123445555556555543332 235677889999999999999887765532
Q ss_pred HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
-+..++.-++..|...+++.|.....-+..+++.|+++
T Consensus 382 -Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 382 -NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 23446667777777778889988888888888888765
No 65
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.57 E-value=0.00011 Score=93.66 Aligned_cols=208 Identities=21% Similarity=0.229 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
+..+++..+++...+.+++..|.+++++++.+++.+..... -..++..+.....+..+...|..++..+..+++++-.+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 45668888888888888899999999999999998643321 12455555554433336678888999999999987655
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----------------hHHhHHHHHHHhccCCChHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----------------GVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----------------~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
-.|...+++..++..++| +.+...+.++++.++...+.. -+..++|.+++...+.+-..|..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 567778888889999988 778889999999988663321 12568899999988776668888
Q ss_pred HHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHh
Q 000143 1478 SVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLM 1544 (2058)
Q Consensus 1478 a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~ 1544 (2058)
.+.+|..+..+.|.. +.++++.++|.+++.|+-+++.|+.++..+|..+.+.-. .++++.++|.+++
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 899999999999976 678999999999999998899999999999999987542 1355667776664
No 66
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.0012 Score=82.83 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~ 1331 (2058)
...|-+-+..+|... .+ .+|..|+-++-.+.-.++. .++..+++|.+-|.||++.|+.++...+-.|.+..
T Consensus 142 ARDLa~Dv~tLL~ss----kp--YvRKkAIl~lykvFLkYPe---Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSS----KP--YVRKKAILLLYKVFLKYPE---ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred hHHHHHHHHHHHhcC----ch--HHHHHHHHHHHHHHHhhhH---hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 345555555665541 23 6999999999888865543 36788999999999999999999888888888877
Q ss_pred ccchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCccccc----hhchHHHHHHHHhCCCCHHHHHHHHH-HHHH
Q 000143 1332 QDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLK----KYGIAATLREGLADRNSAKRREGALL-AFEC 1405 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~-~~~vR~~Aa~~L~~l~~~~g~~~l~----~~~il~~L~~~l~~~~~~~~R~~al~-al~~ 1405 (2058)
+...-++.|.++..|..+. +|. |-.+++-+|.-..- ...+++-|.+.+.+. .|+. .+++
T Consensus 213 PknyL~LAP~ffkllttSsNNWm--------LIKiiKLF~aLtplEPRLgKKLieplt~li~sT-------~AmSLlYEC 277 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSSNNWV--------LIKLLKLFAALTPLEPRLGKKLIEPITELMEST-------VAMSLLYEC 277 (877)
T ss_pred CcccccccHHHHHHHhccCCCee--------hHHHHHHHhhccccCchhhhhhhhHHHHHHHhh-------HHHHHHHHH
Confidence 6666677788888777654 453 22233333211100 114555566555443 1111 1111
Q ss_pred HHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000143 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485 (2058)
Q Consensus 1406 L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~l 1485 (2058)
+-....- .+...+.|....+.-+ +..|-..+.|.+...|+.++.+++.+
T Consensus 278 vNTVVa~-----------s~s~g~~d~~asiqLC--------------------vqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 278 VNTVVAV-----------SMSSGMSDHSASIQLC--------------------VQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred HHHheee-----------hhccCCCCcHHHHHHH--------------------HHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 1110000 1111122222211111 11122234455666666666666666
Q ss_pred HhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCC
Q 000143 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1486 a~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~ 1549 (2058)
+..-|+.++.+.. .++++|.|.++.+|-.|+.-+..+.. ...+.+|+..|+..+.+.
T Consensus 327 ~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 327 LKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVS---KKNLMEIVKTLMKHVEKA 383 (877)
T ss_pred hhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhc
Confidence 6666655554422 23456666667777666666555543 334555555555554433
No 67
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-05 Score=98.36 Aligned_cols=273 Identities=18% Similarity=0.179 Sum_probs=180.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccC
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~ 1817 (2058)
+...+.....|.+..||..|.+++-.+-+.+. .-..+.....+.+.|++..||.+|++++.-+.....+.
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~-------- 268 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP-------- 268 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc--ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc--------
Confidence 33446677788899999999999877765332 11235666778889999999999999887764322110
Q ss_pred CCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHH--------
Q 000143 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN-------- 1888 (2058)
Q Consensus 1818 ~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~-------- 1888 (2058)
.+.++. .....+..+..++....|.+..||-.|...++.+-.....-+...+ ..++.
T Consensus 269 -~e~e~~-------------e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 269 -LERESE-------------EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred -ccchhh-------------hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 000000 0112344555666666677777776666555544321111111110 01111
Q ss_pred ------------------------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHH
Q 000143 1889 ------------------------------------------TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2058)
Q Consensus 1889 ------------------------------------------~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp 1926 (2058)
.++..+.|+-+++|.+|...++.|+.. .+.+....+.
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~ald 413 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVRALD 413 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 122334455679999999999998853 2345567788
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHH
Q 000143 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2058)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp 2006 (2058)
.|.++++|+..++|..+..+|..|.....- -+..++.+.+.+.|.+++||++.-.-++... .....-++-.+.
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i------~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLAI------REEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDMCVA 486 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhee------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 899999999999999999999987766422 1456788888899999999999987776652 222234667777
Q ss_pred HHHHhcCC-CcchHHHHHHHHHHHhhcCCccchhhhh
Q 000143 2007 TLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 2007 ~Ll~~L~~-~~~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
.|+..|.- |..++..+.+++.|=++++..++.+.-.
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~r 523 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGR 523 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHHH
Confidence 88888864 6778899999999998887777665443
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.47 E-value=0.019 Score=78.01 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
.+..++..++..+. ++...+|..|..||..++..- +..+...++-..+...+.|. ...+|++|+..+|...-...
T Consensus 813 sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~D-p~vL~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~-- 887 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEAD-PSVLSRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIP-- 887 (1692)
T ss_pred hhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcC-hHhhcCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccH--
Confidence 34566666666554 556889999999999998753 23333335555555566665 78899999998886654433
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
.++.+.-..+.....|+...||+.++..++.+....+... +..+.-.++.+..|.+-.++..+++.+-.+...
T Consensus 888 --e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 888 --ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred --HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 3444555666778889999999999999999988777643 356677777888888888888888888887754
No 69
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=5.4e-05 Score=96.24 Aligned_cols=390 Identities=18% Similarity=0.192 Sum_probs=218.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-Hh
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL 1458 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~ 1458 (2058)
+.++..-..++ +|..|.-|+...+.+ .+......+...+..+++|.++.||.++.-+...+...-..... ..
T Consensus 88 vnt~~kD~~d~-np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 88 VNTFLKDCEDP-NPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhccCCCC-CHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc
Confidence 33333334444 888888776655433 35566667788888999999999999998888777543333222 45
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--hH
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI 1535 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i 1535 (2058)
+++.+...+.|.++.+-..|+.++..+.+..+. ......+.++..++..+++-+. ..-+..|..++....++ +.
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea 237 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA 237 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH
Confidence 677777778888888888888888888877653 2222223444445554443222 22233344444433332 23
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhc-cc----------------------cccCChhhHhhHHHHHHHh---h---
Q 000143 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQT-TF----------------------VNTVDAPSLALLVPIVHRG---L--- 1585 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr-~al~~L~~~-~f----------------------~~~~~~~~l~~llp~L~~~---L--- 1585 (2058)
..++..+...+...+..+. .++..+... .+ ......-++..+--++.+. +
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhH
Confidence 3444444443333332211 111111110 00 0000000111111111110 0
Q ss_pred --------cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccc
Q 000143 1586 --------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2058)
Q Consensus 1586 --------~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ 1657 (2058)
.|+ --++..-.+++..++. ..-+++++..+.....+-+.+.-..+++|+|.++....+. .+
T Consensus 318 ~~~Ff~kynDP-iYvK~eKleil~~la~--------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~ 386 (734)
T KOG1061|consen 318 IKVFFCKYNDP-IYVKLEKLEILIELAN--------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--ND 386 (734)
T ss_pred hHeeeeecCCc-hhhHHHHHHHHHHHhh--------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hh
Confidence 111 1233333333333322 1134456677777777777777788999999999877665 78
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc-CChhHHHHHHHHHHHhHHHhchhHHHhHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~-~~~~vR~~al~~l~~la~~~g~~f~pyl~ 1736 (2058)
++..|++.++...++ +.+.+...+-.+.+.+... .+.+.+.+.....+ .+|..|.+.++.+|..+..+.+ ..
T Consensus 387 cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~-~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~ 459 (734)
T KOG1061|consen 387 CVSILLELLETKVDY-VVQEAIVVIRDILRKYPNK-YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----AL 459 (734)
T ss_pred hHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCc-hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HH
Confidence 999999999865555 3344455555665555443 36666666655554 3788999999999998888765 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHH
Q 000143 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVE 1797 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ 1797 (2058)
.++..+++...|+...|+..-+.|.-.+.-..+...-+.+-..|..+..| ++..+|-.++-
T Consensus 460 elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~ 521 (734)
T KOG1061|consen 460 ELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLI 521 (734)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHH
Confidence 57788888899998888877666554443333322222222233333333 34456655543
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0013 Score=83.69 Aligned_cols=291 Identities=17% Similarity=0.203 Sum_probs=188.7
Q ss_pred chHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
+++-.+...++++= +.-+--.|+.++|.+ ++. .....+.|.+-+.+...++.||+.|.-|+-++....+ +
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i---~s~---EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~ 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNI---CSP---EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-D 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhcc---CCH---HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-h
Confidence 45555555555432 222333344444444 332 3345678888888889999999999999998876644 4
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC---------------CCHHHHHHH
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---------------THPKVQSAG 1519 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D---------------~~~~VR~aA 1519 (2058)
.+..+++..-+.|.+.+..+-.+++..+-.|+...|+.+. |+..++|.++..|.+ ++|-.+-..
T Consensus 176 l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 5677888888899998888888889999999988775543 445566666555431 347788888
Q ss_pred HHHHHHHHhhcCchhHHhHHHHHHhcc-C--CCChhH-----HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHH
Q 000143 1520 QTALQQVGSVIKNPEIASLVPTLLMGL-T--DPNDHT-----KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2058)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~--d~~~~v-----r~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~ 1591 (2058)
++.|+-++.. ++...+.+..++.-+ . |.+..+ =+|+.++.. -+...+-...-+.+|.+.+..++.+
T Consensus 255 LrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~----I~~~~~LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 255 LRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD----IRSNSGLRVLAINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHhcCCccc
Confidence 8888888774 444444444333322 1 112211 145555433 1222222334466777888877778
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCC
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~ 1671 (2058)
+|+.|...+..... .++..+..|- ..+..+++|++..+|..|.+-.-.++. +.....++..|+++|.+. +
T Consensus 329 irYvaLn~L~r~V~--~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn---~~Nv~~mv~eLl~fL~~~-d 398 (866)
T KOG1062|consen 329 IRYVALNMLLRVVQ--QDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN---ESNVRVMVKELLEFLESS-D 398 (866)
T ss_pred eeeeehhhHHhhhc--CCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHhc-c
Confidence 88888777776655 3544444443 345667789999999988887777764 334556777788888755 4
Q ss_pred hHHHhhHHHHHHHHHHHhchh
Q 000143 1672 NVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+.+...+..+.++++.+.++
T Consensus 399 ~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCc
Confidence 557777888888888777665
No 71
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.44 E-value=0.00018 Score=91.79 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHHHHHHhccc-----chhhHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1392 SAKRREGALLAFECLCEKLGRL-----FEPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~-----~~p~l~~-llp~Ll~~l~-----D~--~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+.......+.++..+.+..... ..-|... ++|.+++..- +. ++.+=..+...++.++..++.+.-..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555566666666666554322 2334443 6777665542 12 35677777888888888888876555
Q ss_pred HHHHHHHhcc----------CCC---hHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHH
Q 000143 1459 VLPSLLKGLE----------DKA---WRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1459 llp~Ll~~L~----------~~~---~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL 1523 (2058)
++..+...+. +.. +..+. .+..+..+..+.++. ..+....++..+..... ..++..|.++++++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSR-LVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHHHHccccccCCCCcccccccccccc-HHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5555554432 122 12222 233333333333332 22355566777666643 34589999999999
Q ss_pred HHHHhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1524 QQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1524 ~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
+.+..-+.+. .+..++..+...+.. ......+..+.+++.+
T Consensus 215 a~LvNK~~~~~~l~~~l~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 215 ASLVNKWPDDDDLDEFLDSLLQSISS--------------------------------------SEDSELRPQALEILIW 256 (415)
T ss_pred HHHHcCCCChhhHHHHHHHHHhhhcc--------------------------------------cCCcchhHHHHHHHHH
Confidence 9998765432 345555544443300 0111223333334433
Q ss_pred HHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc----------------ccCccchHHHHHhhc
Q 000143 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG----------------EENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg----------------~~~~~~llp~L~~~L 1666 (2058)
+++.+--.. .|....++..+..++.| +++...++++++.+..-.. ..+|..++|.+++..
T Consensus 257 i~KaLv~R~--~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 257 ITKALVMRG--HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF 332 (415)
T ss_pred HHHHHHHcC--CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence 333211000 12334456666666666 6677888888888775311 115677999999988
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~L 1742 (2058)
+...+. .|.....+|+.+++.+..+ ++++++|-+++.+.-+++.++.+++.++..+.....+-+.+|+..++|.+
T Consensus 333 ~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 333 KEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred hhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 754433 7888899999999988876 56889999999999999999999999999998888888899999999999
Q ss_pred HHh
Q 000143 1743 LDG 1745 (2058)
Q Consensus 1743 l~~ 1745 (2058)
++.
T Consensus 412 L~l 414 (415)
T PF12460_consen 412 LKL 414 (415)
T ss_pred Hhc
Confidence 863
No 72
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0097 Score=75.11 Aligned_cols=294 Identities=20% Similarity=0.211 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
-..|.-|+|.+-..-|. .+...|.+.|++.+...+|.+++-+||-...+.... ++...+...+...+.-.-++
T Consensus 396 EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~---eiYe~lKevLy~D~AvsGEA 468 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE---EIYEKLKEVLYNDSAVSGEA 468 (929)
T ss_pred ccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH---HHHHHHHHHHhccchhhhhH
Confidence 45677788877665554 377778888887777778999888887544332222 33333444444444333344
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHH
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQS 1794 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~s 1794 (2058)
+--.+|-+...... ...+.-++..-.+ ..+.+.....-.+. +..|+.. ...=|.+.+.+.|.++-.|.+
T Consensus 469 Agi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGia--L~~ygrq--e~Ad~lI~el~~dkdpilR~~ 538 (929)
T KOG2062|consen 469 AGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGIA--LVVYGRQ--EDADPLIKELLRDKDPILRYG 538 (929)
T ss_pred HHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhHH--HHHhhhh--hhhHHHHHHHhcCCchhhhhh
Confidence 44444433221111 1223333333222 12333222211111 1223322 123355666677788888887
Q ss_pred HHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHHh
Q 000143 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTIVA 1873 (2058)
Q Consensus 1795 av~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~-~~~D~~~~VR~aA~~~l~~lv~ 1873 (2058)
.+-.++. .|+ |.. .+..+..|+. ..+|.+..||++|...++-++-
T Consensus 539 Gm~t~al-Ay~--GTg-------------------------------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 539 GMYTLAL-AYV--GTG-------------------------------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hHHHHHH-HHh--ccC-------------------------------chhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 6544432 122 111 0122222322 3679999999999988877665
Q ss_pred hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000143 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1874 ~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2058)
..| +.+|..++.+. .+-|+.+|..++-+||-.|...|.. ..+..|..+.+|+..-|||++|++++-|+.+
T Consensus 585 ~dp----~~~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 585 RDP----EQLPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred cCh----hhchHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 444 34455555542 3458999999999999988766644 4444555556677788999999999988777
Q ss_pred hChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2058)
Q Consensus 1954 ~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~ 1991 (2058)
..+ ++.|-+..+...+.+.+.|.+.++---.-..++.
T Consensus 655 ~t~-~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 655 QTE-QLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred ccc-ccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 654 4556667778888888888877654433333333
No 73
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.41 E-value=2.1e-06 Score=84.16 Aligned_cols=93 Identities=26% Similarity=0.350 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHH
Q 000143 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
.|.+++.++..++..++..+.+|+..++|.++.++.|++..||..|++++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL------------------------------ 51 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEAL------------------------------ 51 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH------------------------------
Confidence 58889999999999888878888888888888887777666666555554
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
..++......+-+++++|++.|.+.+.|+++.||.+| +.|.++
T Consensus 52 --------~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 52 --------YNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4455555556667889999999999999999999987 444443
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00034 Score=89.25 Aligned_cols=361 Identities=13% Similarity=0.156 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.+++.++|+++.+|..|.+.++.+- -+..+..+..++...+.|.+.-+|+.+......+-...++.... ..
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~--~g 160 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED--SG 160 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--cc
Confidence 46678888999999999999988776541 12234678888999999999999999888887776655554443 37
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-h---hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P---EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~---~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l 1574 (2058)
+++.|...+.|++|.|-..|..+|..+.+.-.+ . ....++..++.++.+-++--+ ..++.+.. +.+... ...
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~--y~p~d~-~ea 237 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE--YVPKDS-REA 237 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh--cCCCCc-hhH
Confidence 788888889999999999999999999886542 1 125566666666665544333 34444443 333222 223
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
..++..+...+...+..+...+.+.+-.+...+.+ -...++..+-+.+..++..+. ++...+.+-++.+.....+ +
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~ 313 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-I 313 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH--HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-H
Confidence 34555555555555554544444444443332111 111233344455555554444 8888888888777765433 2
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHh
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~py 1734 (2058)
+..-+..++-. .+|+-+ +...-.+++..++. .+.+.+++.++.....+-+...-..++.++|.++.-..+.
T Consensus 314 ~~~~~~~Ff~k-ynDPiY-vK~eKleil~~la~---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---- 384 (734)
T KOG1061|consen 314 LKVEIKVFFCK-YNDPIY-VKLEKLEILIELAN---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---- 384 (734)
T ss_pred HHhHhHeeeee-cCCchh-hHHHHHHHHHHHhh---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh----
Confidence 22111111100 023333 33333444443332 2345567777777777777777777889999988766543
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHH
Q 000143 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll 1803 (2058)
+..++.++.++.-....|...+...++.+...|.... +.+.+.+...+.. .+++.|.+-+.++|...
T Consensus 385 -~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 385 -NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred -hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhh
Confidence 5678888888886666677777777787777776542 4455555544433 35677887777787764
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.0055 Score=74.75 Aligned_cols=461 Identities=14% Similarity=0.142 Sum_probs=209.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh-hHH-HHHHHHHhccccccCChhhHhh
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~vr-~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
.+.=.+.++.+..++..|+....++..+.....+--+ ....+++-++...+ .++ .|+..|.. -+++...-.
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm--~tssiMkD~~~g~~~~~kp~AiRsL~~-----Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM--GTSSIMKDLNGGVPDDVKPMAIRSLFS-----VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH--HHHHHHHhhccCCccccccHHHHHHHH-----hcCcchhhh
Confidence 4555677888999999999999999888765432211 11223332222211 222 45555543 122222223
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhhHhhhhHHHHHhhCCCCH--------H-HHHHHHHHHHHH
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEVKKVLVDPIP--------E-VRSVAARAIGSL 1646 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~-~~l~pyl~~ll~~L~~~l~d~~~--------~-vR~~a~~aLg~l 1646 (2058)
+-.++..++-++++.++..|.-.- .+++... .....|....-.....+-+-|+. + .--.-..++|.+
T Consensus 138 ~er~l~~a~Vs~~~a~~saalv~a---YhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlL 214 (898)
T COG5240 138 FERYLNQAFVSTSMARRSAALVVA---YHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLL 214 (898)
T ss_pred HHHHhhhhccccchhhhhhHHHHh---hhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHH
Confidence 334444555566666655443211 1111111 12333444444444333222110 0 011224456665
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhH---HHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHh
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGA---AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~a---a~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~l 1723 (2058)
...-..+.+ .+-.+++.+.....-....+. .....+++.. ..+.+..+.|.+-.-+.+.-..|.-.+..++..+
T Consensus 215 yq~kr~dkm--a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 215 YQSKRTDKM--AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred HHHhcccHH--HHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 543222211 112222333211111001111 1111222111 1224455666666666665556666666666665
Q ss_pred HHH-hchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1724 PRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1724 a~~-~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+.. .|.+ ++.+.+..+-..|.......|-.|++.+.++...+... +...-|.++..+.|.|..|-..|+. .|
T Consensus 292 ~~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~evEsLIsd~Nr~IstyAIT---tL 364 (898)
T COG5240 292 SEENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNKEVESLISDENRTISTYAIT---TL 364 (898)
T ss_pred HHhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecChhHHHHhhcccccchHHHHH---HH
Confidence 543 3665 45666777777777777778889999998887665433 4445677888888777666555443 33
Q ss_pred HHHhhCCccc---------ccccCCCCCCCc--chHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHH
Q 000143 1803 LFKVAGTSGK---------ALLEGGSDDEGA--STEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKT 1870 (2058)
Q Consensus 1803 l~~~~g~~~k---------~~~~~~~e~~~~--~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~ 1870 (2058)
+.. |.... ..+.+.+ |++ ..-.+.+.+.-.+... ....+.-|-.. .++.....+..+++++..
T Consensus 365 LKT--Gt~e~idrLv~~I~sfvhD~S--D~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 365 LKT--GTEETIDRLVNLIPSFVHDMS--DGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHc--CchhhHHHHHHHHHHHHHhhc--cCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 211 11000 0000000 011 0111111221111111 11122222111 122233344444444444
Q ss_pred HHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchh-hchHHHHhhhcCCCChhHHHHHHHHHHH
Q 000143 1871 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2058)
Q Consensus 1871 lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l-~~llp~L~~~l~d~~~~vR~~a~~aL~e 1949 (2058)
++.+.|..-...+.. +.....|..+ -+.+.+.||-+.+.....-- ..++-.+.+.+-=++.-+|.++..||..
T Consensus 440 ~~~~~p~skEraLe~----LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLsk 513 (898)
T COG5240 440 AMENDPDSKERALEV----LCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSK 513 (898)
T ss_pred HHhhCchHHHHHHHH----HHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444332222222 2222232222 23344444444333221111 1222222222222345588888888876
Q ss_pred HHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1950 ii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
..-..... +. ...+...+..+++|.|.+||+.|..++..+-
T Consensus 514 f~ln~~d~-~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 514 FALNISDV-VS--PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hccCcccc-cc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 55443321 11 1567788888999999999999999887764
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.33 E-value=5e-05 Score=94.80 Aligned_cols=242 Identities=18% Similarity=0.079 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p 1416 (2058)
..++.++..+..+++..++..++.++... - ....++.+.+.+.+. +..+|.++..+++.+..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~~-------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---E------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLGG-------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---C------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCc--------
Confidence 34556666665555666666655555311 0 112367777777776 67788888887765432
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
....+.+...+.++++.||.++..+++.... .-.+.+...+++.+..+|..|+.++|.+..
T Consensus 116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------DPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred --hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 2455677777888899999888877765311 124566677788899999999999987753
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000143 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1497 L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
...+|.|...+.|.++.||.+|+.++..++. + .-++.+.....++...++..+..+.... . ...
T Consensus 177 -~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal~-----~---~~~ 240 (410)
T TIGR02270 177 -RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAVA-----G---GPD 240 (410)
T ss_pred -ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHhC-----C---chh
Confidence 2455566778999999999999999988764 1 2233444433444444432222211100 0 113
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
.++.|...+++.. +|..++.++|.+. ++ ..++.|+..+.|+. ++..|.+++..|.
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 5666667777654 7888777777653 32 25666777776653 7788888887776
No 77
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00048 Score=86.22 Aligned_cols=276 Identities=21% Similarity=0.215 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHH
Q 000143 1236 MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 1315 (2058)
Q Consensus 1236 al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~ 1315 (2058)
++.+...+-..||.. .+..+.+.|.. . ..+.||..++-.+|-.+ +...+ +++.+.+-..|...+..
T Consensus 399 alyAlGLIhA~hG~~----~~~yL~~~Lk~-~----~~e~v~hG~cLGlGLa~--mGSa~---~eiYe~lKevLy~D~Av 464 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG----ITDYLLQQLKT-A----ENEVVRHGACLGLGLAG--MGSAN---EEIYEKLKEVLYNDSAV 464 (929)
T ss_pred hhhhhhccccCcCcc----HHHHHHHHHHh-c----cchhhhhhhhhhccchh--ccccc---HHHHHHHHHHHhccchh
Confidence 344433333444544 44444445444 1 12368999988777655 33333 56667776666554433
Q ss_pred HHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHH
Q 000143 1316 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKR 1395 (2058)
Q Consensus 1316 V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~ 1395 (2058)
.-+++.-.++-++ ++....+.+..++.--.+.....+.|+-+.+++.++-+.- .+.=+++.+.+.++ |+-.
T Consensus 465 sGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq------e~Ad~lI~el~~dk-dpil 535 (929)
T KOG2062|consen 465 SGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ------EDADPLIKELLRDK-DPIL 535 (929)
T ss_pred hhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh------hhhHHHHHHHhcCC-chhh
Confidence 3333333333322 2334566777777665554556777888888877765431 23345566677776 8999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChH
Q 000143 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473 (2058)
Q Consensus 1396 R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~ 1473 (2058)
|.+.+.+++.---+-|. .. ++..++. ..+|.+++||++|..+++.+.-.- +..+|..++.|. +-++.
T Consensus 536 R~~Gm~t~alAy~GTgn--nk----air~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 536 RYGGMYTLALAYVGTGN--NK----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPH 604 (929)
T ss_pred hhhhHHHHHHHHhccCc--hh----hHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcChh
Confidence 99988766543333332 22 3333333 478999999999999999775332 234566666666 45899
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~ 1550 (2058)
+|.++..+||-.+.+.+.. ..+..|-.+..|+..-||+.|+-+++-+.-... +|.+..+-..+.+.+.|..
T Consensus 605 VRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 605 VRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred hhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhh
Confidence 9999999999877665432 344455566779999999999999988764433 3455566666666666654
Q ss_pred h
Q 000143 1551 D 1551 (2058)
Q Consensus 1551 ~ 1551 (2058)
+
T Consensus 679 E 679 (929)
T KOG2062|consen 679 E 679 (929)
T ss_pred h
Confidence 4
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.003 Score=76.90 Aligned_cols=459 Identities=15% Similarity=0.128 Sum_probs=238.1
Q ss_pred HHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCch-HHHHHHHH-HHhhcCCCCCCCHHhHH-H
Q 000143 1061 SALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEK-SVAEAAED-IWDRYGYDFGTDYSGLF-K 1137 (2058)
Q Consensus 1061 ~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~-~~r~~a~~-~w~~~~~~~~~~~~~ll-~ 1137 (2058)
.+++..++.|...|.++--++.++..... +. +....-+..-...+.+ .++-.|-. +..-.+.+....+..++ +
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dv---lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~ 144 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTE-DV---LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQ 144 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcch-hh---hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhh
Confidence 45677889999999999888887752211 11 1111111111111111 22222211 11222222223444444 5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCC---CCCCCchhhHHHHHHHHHhhhhhCCCCh-
Q 000143 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGD---NVDAGWLGRQGIALALHSAADVLRTKDL- 1213 (2058)
Q Consensus 1138 ~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~---~~~~~~~~R~~~~~al~~l~~~~~~~~~- 1213 (2058)
++-++...+|.+|.-.--++.-...+..........+....-...+-. ..-.+...-..--.++|-+.+.-..+..
T Consensus 145 a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma 224 (898)
T COG5240 145 AFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMA 224 (898)
T ss_pred hccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHH
Confidence 777888888777654333333221122233333333332211111100 0001111122333455555443322211
Q ss_pred -HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh-Hh
Q 000143 1214 -PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK-HL 1291 (2058)
Q Consensus 1214 -~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~-~l 1291 (2058)
..+++.+.. -..-.|..-....+++....+... .+.+.++-|++..++.++ .+.|.-.+...+.+++. +.
T Consensus 225 ~lklv~hf~~-n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k------~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 225 QLKLVEHFRG-NASMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDK------FEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHhhc-ccccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCc------chhhhHHHHHHHHHHHHhcc
Confidence 112222210 011111111112233344444432 244567778888887762 23566666777777764 33
Q ss_pred ccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2058)
Q Consensus 1292 ~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~ 1368 (2058)
.++. +.+.+..|-..|+.+....|-++...+..+.-..++.. ..-++. |..+ ..|.-+.+++..+++.
T Consensus 297 ~~~~--~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs----LIsd---~Nr~IstyAITtLLKT 367 (898)
T COG5240 297 GSQF--VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES----LISD---ENRTISTYAITTLLKT 367 (898)
T ss_pred CHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH----Hhhc---ccccchHHHHHHHHHc
Confidence 3333 66777777778888877777777777777765433221 112222 2222 2466788899999886
Q ss_pred hCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Q 000143 1369 FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1369 ~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~~~~VR~aA~~al~~l 1447 (2058)
-..+.+. .++..+...+.|- +..-+.-++.++..++-.+++.-..|+ ..+...+. ...-....++.+++..+
T Consensus 368 Gt~e~id--rLv~~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k~~s~l----~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 368 GTEETID--RLVNLIPSFVHDM-SDGFKIIAIDALRSLSLLFPSKKLSYL----DFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred CchhhHH--HHHHHHHHHHHhh-ccCceEEeHHHHHHHHhhCcHHHHHHH----HHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5444443 4566666555543 222334566777777776654334444 33333333 33456788888888888
Q ss_pred HHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1448 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1448 ~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~--l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2058)
++..+. .-...+..|...++|-++. +-++..||-+.+..|.. -..|...|...++ =.+..||.+|..||..
T Consensus 441 ~~~~p~-skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLsk 513 (898)
T COG5240 441 MENDPD-SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSK 513 (898)
T ss_pred HhhCch-HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHH
Confidence 776543 2355667777777765543 23566777777766653 3334444444432 2367899999999999
Q ss_pred HHhhcCchhH-HhHHHHHHhccCCCChhHH
Q 000143 1526 VGSVIKNPEI-ASLVPTLLMGLTDPNDHTK 1554 (2058)
Q Consensus 1526 l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr 1554 (2058)
|+-...++.. +.+...+..+++|.++.+|
T Consensus 514 f~ln~~d~~~~~sv~~~lkRclnD~DdeVR 543 (898)
T COG5240 514 FALNISDVVSPQSVENALKRCLNDQDDEVR 543 (898)
T ss_pred hccCccccccHHHHHHHHHHHhhcccHHHH
Confidence 9987777655 3444455556677776666
No 79
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=0.042 Score=69.70 Aligned_cols=442 Identities=15% Similarity=0.237 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHhHhc----cCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccc-hHHHHHHHHHH--Hh
Q 000143 1276 VREGVVIFTGALAKHLA----KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-APTLVSRLLDQ--LM 1347 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~----~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~-~~~~v~~Ll~~--L~ 1347 (2058)
+-..+++++|+...-++ ..+++ ++.|.+.+. .+++|.+++.|+..++..- ++. --.++..+-+. +.
T Consensus 209 l~~~cLdc~g~fVSWIdInLIaNd~f----~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lf 282 (980)
T KOG2021|consen 209 LINSCLDCIGSFVSWIDINLIANDYF----LNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELF 282 (980)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhH----HHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 44566777777765433 23333 344455554 6889999999998888643 222 12233322111 11
Q ss_pred --cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 000143 1348 --KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2058)
Q Consensus 1348 --~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~L 1425 (2058)
.+.+..+-..--..++.++.+.|.+.+. +... +.++.+....+.++..+ -.++|.+
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~gvel~~---i~s~----lnseld~~~kqn~l~~l---------------l~~vpyl 340 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGFGVELTI---IISQ----LNSELDTLYKQNVLSIL---------------LEIVPYL 340 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhcceeeeh---hHhh----hhhccCHHHHHHHHHHH---------------HHHHHHH
Confidence 1111111112223455667777765542 1111 11223455555443322 2356666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH---Hhh---hhh---hHHhHHHHHHHhcc-------CCC----------hHHHHHHH
Q 000143 1426 LVAFSDQVVAVREAAECAARAMM---SQL---SAQ---GVKLVLPSLLKGLE-------DKA----------WRTKQSSV 1479 (2058)
Q Consensus 1426 l~~l~D~~~~VR~aA~~al~~l~---~~l---~~~---~v~~llp~Ll~~L~-------~~~----------~~~R~~a~ 1479 (2058)
+..+.|+.++.......-+.... +.+ +.. .+..++..+...+. +++ ...|+---
T Consensus 341 lq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk 420 (980)
T KOG2021|consen 341 LQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK 420 (980)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 66666655544333322111111 111 111 12334444333221 111 12344444
Q ss_pred HHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-------------HhHHHHHHhc-
Q 000143 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------------ASLVPTLLMG- 1545 (2058)
Q Consensus 1480 ~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-------------~~lvp~Ll~~- 1545 (2058)
..+..+..-+|+-+...+..-+..-.......++..-+.|+.-+-.+++.+++++. ..+++.++..
T Consensus 421 ~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq 500 (980)
T KOG2021|consen 421 NFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ 500 (980)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc
Confidence 45555555566555444444443333334455677788999999999998876542 2344444432
Q ss_pred -cCCCChhHH-HHHHHHHh-ccccccCChhhHhhHHHHHH--HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1546 -LTDPNDHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVH--RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1546 -l~d~~~~vr-~al~~L~~-~~f~~~~~~~~l~~llp~L~--~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
...+++.++ .-++.+.+ ..|..+ .......++..+. +++...+..||..|......+.+.+. +.+.||.+.+
T Consensus 501 v~~h~h~lVqLlfmE~ivRY~kff~~-esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~i 577 (980)
T KOG2021|consen 501 VLAHDHELVQLLFMELIVRYNKFFST-ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEI 577 (980)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhc-chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 233444333 22223332 112211 1112222333222 46677788999999988888887653 4678888888
Q ss_pred hHHHHHhhCCCCHHH------------HHHHHHHHHHHHHh--hccc----Ccc---------chHHHHHhhcccCCChH
Q 000143 1621 LPEVKKVLVDPIPEV------------RSVAARAIGSLIRG--MGEE----NFP---------DLVSWLLDALKSDNSNV 1673 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~v------------R~~a~~aLg~l~~~--lg~~----~~~---------~llp~L~~~L~~d~~~~ 1673 (2058)
+..+..++..+.+.. .-...+++|.+... ...+ |.. ..+-.+...|.+|.+..
T Consensus 578 ln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~p 657 (980)
T KOG2021|consen 578 LNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASP 657 (980)
T ss_pred HHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhcccccc
Confidence 888887774222211 11223344433311 0000 211 12222222333443321
Q ss_pred ----HHhhHHHHHHHHHHHhch-----------hHHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHH
Q 000143 1674 ----ERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2058)
Q Consensus 1674 ----~R~~aa~~L~~i~~~~g~-----------~~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~ 1736 (2058)
.-..++.++|.+++++.. ..+...+..++..+.. ....+|.++-..++.+..++|++.-||++
T Consensus 658 v~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfip 737 (980)
T KOG2021|consen 658 VVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIP 737 (980)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchH
Confidence 223577888888776532 1455555555544443 35678888889999999999999999999
Q ss_pred HHHHHHHHhccC
Q 000143 1737 QVLPAILDGLAD 1748 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d 1748 (2058)
+.+..+++...-
T Consensus 738 klie~lL~s~d~ 749 (980)
T KOG2021|consen 738 KLIELLLSSTDL 749 (980)
T ss_pred HHHHHHHhcCCH
Confidence 999999986543
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.25 E-value=5.3e-06 Score=81.38 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhccCCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~ 1550 (2058)
.|++++..|.+++...++.+.+|++.|+|.++.++.|++++||..||++|..++++.++. ++.++.+.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999999999999999999999999999999999999999999999988763 56888999999999999
Q ss_pred hhHHHHHHHH
Q 000143 1551 DHTKYSLDIL 1560 (2058)
Q Consensus 1551 ~~vr~al~~L 1560 (2058)
+.||.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888654443
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.24 E-value=7.7e-05 Score=93.12 Aligned_cols=240 Identities=18% Similarity=0.126 Sum_probs=160.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
..++.+...+..+.+..++..+..++.... .+ ..+..++..+.|.++.||..+.++|+.+- -.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-------~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------~~ 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE-------DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------GR 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC-------Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------ch
Confidence 345666677754446777766655442111 11 13677888999999999999999998652 23
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
...+.|...+.+.++.+|..++.+++..-. .-.+.+...++|.++.||.+|+.+|+.+... .
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~ 178 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-------L 178 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------c
Confidence 556778888899999999998888876321 2245667788899999999999999998752 3
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+|.|...+.|+++.+| .|+..++...- ..-.+.+.....+....++..+..++... ++
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~lG~---------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~------- 238 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLAGS---------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG------- 238 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc-------
Confidence 55667778999999998 56666654110 11223333333444444444443344322 22
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
+..++.|..+++|+. +|..++.++|.+.. +..++.|++.+.++. .+..+..++..|
T Consensus 239 -~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 -PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred -hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777888888865 89999999987753 578888988887433 566677766654
No 82
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.05 Score=69.01 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhhhCccccchhchHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhhHHH-HHHHHH
Q 000143 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVIQ-MLPLLL 1426 (2058)
Q Consensus 1357 ~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-------~~~~~~~R~~al~al~~L~~~lg--~~~~p~l~~-llp~Ll 1426 (2058)
+|+.++-.+....+...+. ++++++...+. +-+++...++|+..+..+..-+. ..+...... +++.++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555555555555544443 78888887772 22467888999999988887332 233333333 678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC--hhhHhhhhhhHHHH
Q 000143 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVPK 1503 (2058)
Q Consensus 1427 ~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~--p~~l~~~L~~Iip~ 1503 (2058)
..+.++.-..|..|++.+..+...++..++ ..+.....+.+.+.+-.++..|..++..+..+. ...++.|.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999999999999999998777777665 667777788888888889999999999888653 34578899999999
Q ss_pred HHHHhcCCCHHHHHHHHHH-HHHHHhhcCc--hhH-HhHHH----HHHhccCCCC---hhHH----HHHHHHHh-ccccc
Q 000143 1504 LTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PEI-ASLVP----TLLMGLTDPN---DHTK----YSLDILLQ-TTFVN 1567 (2058)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~i-~~lvp----~Ll~~l~d~~---~~vr----~al~~L~~-~~f~~ 1567 (2058)
++.+-++-+..+-..+.+. .++|++.+.+ +++ ..++. .....+.+++ ..+. .|...|.. ++.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 9988887666555544443 2444444331 121 23333 2233333331 1111 12221111 11111
Q ss_pred cCC-hh-----hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCH-HHHHHHH
Q 000143 1568 TVD-AP-----SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2058)
Q Consensus 1568 ~~~-~~-----~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~-~vR~~a~ 1640 (2058)
..+ .| ....+.|.+.-.+++.-.+.-++|++++....-.. +++.|....+.+.+.+++.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 11 22335566666666666678888898887655432 34556666777777777777764 4455667
Q ss_pred HHHHHHHHhhccc------CccchHHHHHhhcccCCC-hHHHhhHHHHHHHHHHHhchhHHHHhhHHHH
Q 000143 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDII 1702 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~------~~~~llp~L~~~L~~d~~-~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll 1702 (2058)
-++..+..--|.+ |..-+.......+.++.+ -.++.++++-+-.++-..+.+.+++.+|.+.
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi 772 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFI 772 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHH
Confidence 7777777543333 233355555555655433 2466667766666666666655555555443
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.22 E-value=0.00024 Score=88.67 Aligned_cols=274 Identities=24% Similarity=0.250 Sum_probs=170.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.+...+.|++..+|..+...++.+ +....+|.+...+.+.++.+|..++.+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4566777889999999999998886554 345788999999999999999999998887643 35
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC------------hhHH-HHHHHHHhccc
Q 000143 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2058)
Q Consensus 1500 Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~------------~~vr-~al~~L~~~~f 1565 (2058)
.++.+.+.+. |.+..||..|..+|+.+...- -++.++..+.|+. ..+| .++..++...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~- 177 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG- 177 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-
Confidence 5666777777 799999999999999987632 2444555555543 1234 3444444210
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~ 1645 (2058)
.....+.+...+.+....+|..|...++.+.... ..+.+.+...+.|+++.+|..++.++|.
T Consensus 178 --------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 178 --------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred --------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 1124566677777777788888887777665421 2356777777888888888888777776
Q ss_pred HHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHH
Q 000143 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2058)
Q Consensus 1646 l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~ 1725 (2058)
+. ..+..+.+...+..+ ++..+......++ ........+.+...+.+.+..+|......++.+..
T Consensus 240 ~~-------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 240 IG-------DEEAVDALAKALEDE-DVILALLAAAALG-------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred cC-------cchhHHHHHHHHhcc-chHHHHHHHHHhc-------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 54 234455565666533 3334444333332 11111223334444555666666666555554433
Q ss_pred HhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 000143 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 1761 (2058)
Q Consensus 1726 ~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al 1761 (2058)
.. .....+....+....+|..+....
T Consensus 305 ~~----------~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 305 EK----------AVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred cc----------hHHHHHHHhcCCchhhHHHHHHHH
Confidence 22 122333444555555665554443
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.21 E-value=0.00027 Score=88.23 Aligned_cols=274 Identities=25% Similarity=0.254 Sum_probs=183.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
...+.+.+.+.++ ++.+|..+...++.+. ....+|.+...+.|.++.||..|..+++.+. .+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~~ 104 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------DP 104 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------Ch
Confidence 3466677777777 8889998877654433 2367899999999999999999999777652 24
Q ss_pred hHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCC------------HHHHHHHHHHHH
Q 000143 1458 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH------------PKVQSAGQTALQ 1524 (2058)
Q Consensus 1458 ~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~------------~~VR~aA~~aL~ 1524 (2058)
..+|.+...+. +.++.+|..+..+|+.+... ..+..++..++|.. ..+|.++..+++
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 56777777777 79999999999999987542 22445556666644 268998998888
Q ss_pred HHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000143 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2058)
Q Consensus 1525 ~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L 1603 (2058)
.++. ....+.+...+.++...+| .+..+++.+.... ..+.+.+...+.+.++.+|..++..++.+
T Consensus 175 ~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 175 ELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 8875 3456677778888888887 5666776532211 24667888899999999999988877764
Q ss_pred HhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1604 ~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
.. ....+.+...+.+.++.++..+..+.+ +. ......+.+...+. +....+|..++..++
T Consensus 241 ~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~------~~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~ 300 (335)
T COG1413 241 GD------------EEAVDALAKALEDEDVILALLAAAALG------AL-DLAEAALPLLLLLI-DEANAVRLEAALALG 300 (335)
T ss_pred Cc------------chhHHHHHHHHhccchHHHHHHHHHhc------cc-CchhhHHHHHHHhh-cchhhHHHHHHHHHH
Confidence 32 124566667777888888877776666 11 11222333444444 444557777777766
Q ss_pred HHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHH
Q 000143 1684 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2058)
Q Consensus 1684 ~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l 1720 (2058)
.+..... ....+....+.+..+|.......
T Consensus 301 ~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 301 QIGQEKA-------VAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hhcccch-------HHHHHHHhcCCchhhHHHHHHHH
Confidence 5543322 12233334445556665554443
No 85
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.11 Score=69.88 Aligned_cols=160 Identities=13% Similarity=0.246 Sum_probs=118.4
Q ss_pred hHHHHhhHHHHHhhccC----ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 000143 1692 VYFEHILPDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~----~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+..+.|.+...++++ +|.++.++.-+++.+...- . .|.+.-+|.++..+. .+++-||.++.-+++.+.-
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a---~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-A---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-H---HHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 35577888888888664 7899999988888775432 2 366777888888887 7889999999999988876
Q ss_pred HhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHH
Q 000143 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2058)
Q Consensus 1767 ~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL 1846 (2058)
.|. ..++..-+.+.+.+.|++..+|..|+-.+..|+-+ .++++=| .+
T Consensus 991 ~fp-nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--------------------------dmiKVKG------ql 1037 (1251)
T KOG0414|consen 991 RFP-NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--------------------------DMIKVKG------QL 1037 (1251)
T ss_pred hcc-cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--------------------------hhhHhcc------cH
Confidence 663 34666778888889999999999999999888521 1122222 24
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 000143 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889 (2058)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~ 1889 (2058)
+.+..|+.|++..+|..|-..++.+.+. +.++-..+|.++..
T Consensus 1038 ~eMA~cl~D~~~~IsdlAk~FF~Els~k-~n~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1038 SEMALCLEDPNAEISDLAKSFFKELSSK-GNTIYNLLPDILSR 1079 (1251)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhc-ccchhhhchHHHHh
Confidence 4556678899999999998899888763 35666666666554
No 86
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.12 E-value=0.00015 Score=86.97 Aligned_cols=194 Identities=20% Similarity=0.163 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccch--hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~--~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
...++..++..+..++....|.+|..-|-.+...-+...+.+ ..++..+.+.+.+.++...|..|+..++.+++.-..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 356778888888777777788888887777665433333332 257777788888866889999999999999998888
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVAV-REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~V-R~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p- 1490 (2058)
.|..+....+..++..-.|.++.| |.++.+|+..+....+-..+..+-|.++. .+...-.+++..+..+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 888898888889999999987655 66667777777777776777777777765 445555567777888887765
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+.+...++++.|.+++..+.....||+.|..||-.+...++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 458889999999999999999999999999999999888773
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0018 Score=80.44 Aligned_cols=285 Identities=18% Similarity=0.146 Sum_probs=172.3
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---------
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--------- 1533 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--------- 1533 (2058)
+.....+.+.++|..|++.+-.+.++. ++. ..+.....+.+.|.+..||.+|.+.+.-.+....-|
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--ccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 555667889999999999888777632 222 245566778899999999999999998888876311
Q ss_pred hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHh-hc-CCCHHHHHHHHHHHHHHHhh----
Q 000143 1534 EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG-LR-ERSAETKKKAAQIVGNMCSL---- 1606 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~-L~-d~s~~vr~~A~~~l~~L~~~---- 1606 (2058)
........+...+.|-+..+| +|...+|...- -+-..|...|.+. +. ++-|....+..+.+-.=++.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~------vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ------VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHH------hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 235667777888888888887 67777764111 1111122222221 11 12222222222222111100
Q ss_pred -hCC--C-Cc-----hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhh
Q 000143 1607 -VTE--P-KD-----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1607 -l~~--~-~~-----l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
.++ | +. ..-.-......+...+.|.-.+||.+|..+++.++..- +.+-...+..|++.++ |+-.++|..
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~aldfLvDMfN-DE~~~VRL~ 429 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVRALDFLVDMFN-DEIEVVRLK 429 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhc-cHHHHHHHH
Confidence 000 0 00 00000122345666677888999999999999998543 3344567777888776 666679999
Q ss_pred HHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHH
Q 000143 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a 1757 (2058)
+..+|..++..+... ++.++.++..+.|.+..+|++.-.+++..--.-- ..+...+..+++.|.. .|.=|+..
T Consensus 430 ai~aL~~Is~~l~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~----~~i~m~v~~lL~~L~k-yPqDrd~i 502 (823)
T KOG2259|consen 430 AIFALTMISVHLAIR--EEQLRQILESLEDRSVDVREALRELLKNARVSDL----ECIDMCVAHLLKNLGK-YPQDRDEI 502 (823)
T ss_pred HHHHHHHHHHHheec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHhhh-CCCCcHHH
Confidence 999999888764322 6788888999999999999998877764321111 2334444555555532 12224455
Q ss_pred HHHHHHHHHH
Q 000143 1758 LGAGHVLVEH 1767 (2058)
Q Consensus 1758 ~~al~~lv~~ 1767 (2058)
..++..|.++
T Consensus 503 ~~cm~~iGqn 512 (823)
T KOG2259|consen 503 LRCMGRIGQN 512 (823)
T ss_pred HHHHHHHhcc
Confidence 6666666544
No 88
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.11 E-value=9.1e-05 Score=98.13 Aligned_cols=340 Identities=17% Similarity=0.225 Sum_probs=218.1
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-c-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHh
Q 000143 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2058)
Q Consensus 1620 ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2058)
.+..+...+.-..+..-..++.++..++...|... . ..++| .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666667778888888888777542 1 12222 223333 344789999999999888887522111
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC-HHHHHH--HHHHH-HHHHHHh-----
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRDA--ALGAG-HVLVEHY----- 1768 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~-~~VR~~--a~~al-~~lv~~~----- 1768 (2058)
.+......++.+..+.|.....+...--|.......++. +++.+. ..... +.-....
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 144444555555555554322222222222223332221 111110 00000 0000000
Q ss_pred ------cccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhH
Q 000143 1769 ------ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2058)
Q Consensus 1769 ------~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~ 1842 (2058)
..+..+.+-|.+...+.+++|.-|..+++-+...+....+. . ...+
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----------~------------------~~~~ 292 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----------I------------------VKGY 292 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----------c------------------ccCc
Confidence 01233456677888889999999999999888876321100 0 0001
Q ss_pred HHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchh
Q 000143 1843 NEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921 (2058)
Q Consensus 1843 ~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l 1921 (2058)
...+.. +-....|.+-.|-..|..++..++...+..+..+...+++.++..+.+....+|..+..++-.++. ...+
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l 369 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPL 369 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccH
Confidence 111111 222357888888888999999999888888899999999999999999999999988888887776 3346
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhh
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~-l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~ 2000 (2058)
..+.+.+..++.+.+|..|......+...+...++.. ...-...++|.+....+|.+.+||.+|..+++.+.+..|...
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 7888889999999999999998888888888877322 223448899999999999999999999999999999998765
Q ss_pred HHHHHHHH
Q 000143 2001 IDEIVPTL 2008 (2058)
Q Consensus 2001 ~~~ilp~L 2008 (2058)
+..+|-.+
T Consensus 450 ~~k~L~~~ 457 (815)
T KOG1820|consen 450 FKKLLKDL 457 (815)
T ss_pred HHHHHHhh
Confidence 54444333
No 89
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00085 Score=79.93 Aligned_cols=496 Identities=18% Similarity=0.166 Sum_probs=261.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHH--------H-HHHHcCCCCHHHHHHHHHHHHHHHHh----------h
Q 000143 1392 SAKRREGALLAFECLCEKLGR-LFEPYVIQMLP--------L-LLVAFSDQVVAVREAAECAARAMMSQ----------L 1451 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~-~~~p~l~~llp--------~-Ll~~l~D~~~~VR~aA~~al~~l~~~----------l 1451 (2058)
..++|.+|+.+|..+...+.+ .|-.|...++| . ++-.++|+++..|..|.+.+.++..- +
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 467899999999988887763 45566544433 2 23468899999999998888777521 1
Q ss_pred hhh-----hH------HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChh-hHh-hhhhhHHHHHHHHhcCCCHHHHH
Q 000143 1452 SAQ-----GV------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLS-QCLPKIVPKLTEVLTDTHPKVQS 1517 (2058)
Q Consensus 1452 ~~~-----~v------~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~-~l~-~~L~~Iip~L~~~L~D~~~~VR~ 1517 (2058)
+++ .+ ...-.-++-.+. +....+-...+..|..+....|- ++. ..+-+++..+.+....+++.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 111 11 111111222222 33344444566667777666663 222 24456777778888889999999
Q ss_pred HHHHHHHHHHhhcC-chhHHhHHHHHHh-------ccCCCChhHH----HHHHHHHhccccccCChhhH-----------
Q 000143 1518 AGQTALQQVGSVIK-NPEIASLVPTLLM-------GLTDPNDHTK----YSLDILLQTTFVNTVDAPSL----------- 1574 (2058)
Q Consensus 1518 aA~~aL~~l~~~~~-~~~i~~lvp~Ll~-------~l~d~~~~vr----~al~~L~~~~f~~~~~~~~l----------- 1574 (2058)
.+...++.+...-. -|+++..+..-.. .+..|+.+.. .+...+.. ......++-
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~---~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSV---SSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhcc---CCccCCCCCcceeeeeeeee
Confidence 99999998876533 2444322211000 0000111100 01111110 000000000
Q ss_pred ------hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1575 ------ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1575 ------~~llp~L~~~L~d--~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
.-......+.+.. ....+|.++.+++..|+..++ ....|.-++...+-..+.++.+.+...+++++..+
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~l 322 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEEL 322 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHH
Confidence 0011112222221 123688999999988887543 23446556666666667899999999999999999
Q ss_pred HHhhcccCccc------hHHHHHhhccc--------CC-ChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC
Q 000143 1647 IRGMGEENFPD------LVSWLLDALKS--------DN-SNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ 1708 (2058)
Q Consensus 1647 ~~~lg~~~~~~------llp~L~~~L~~--------d~-~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~ 1708 (2058)
...++.++.|+ ....+...+-. |. ........+.++..+...--.. .-....+.++..+.|.
T Consensus 323 g~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 323 GTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDS 402 (728)
T ss_pred HHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccch
Confidence 99888654432 11111111110 00 0001223334444432211000 0124555666666643
Q ss_pred -ChhHHHHHHHHHHHhHHHhchh-HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------chhch
Q 000143 1709 -RASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2058)
Q Consensus 1709 -~~~vR~~al~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~l~~l 1776 (2058)
+.-+|.+++..++.+....|.. -..+.......++..+.|..-++|..+..+++.|-...-.. ....+
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l 482 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL 482 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence 6677888887776655443331 12355566677777777777778888888887765443211 11111
Q ss_pred HHhHhhhc---CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH-HHh
Q 000143 1777 LPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL-YMV 1852 (2058)
Q Consensus 1777 lp~L~~~l---~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L-~~~ 1852 (2058)
+..+.... .-++++||..+++.+|.+++-+-..... .++ +..+.-...+ ...
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~-----------------------~~~-e~~~~~~~~l~~~v 538 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP-----------------------TFA-EIIEESIQALISTV 538 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc-----------------------cHH-HHHHHHHHhcccce
Confidence 11111111 2246788888888888886322100000 000 0000111111 111
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChh--hHHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1853 RSDVSLSVRQAALHVWKTIVANTPK--TLKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~lv~~~~~--~l~~~l~~L~~~l~~~L-~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
.......||-.+..+++.++.|..- .-.+..+.+++.+...+ ...|..+|..|+.+|..-.+..|
T Consensus 539 ~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 539 LTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 2234456888888999999876321 11133344444443333 34689999999999876655544
No 90
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.11 Score=66.73 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHH--------HHHhhcC-CCCC
Q 000143 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG-YDFG 1129 (2058)
Q Consensus 1059 l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~--------~~w~~~~-~~~~ 1129 (2058)
+.+.|+...+||+.|++-|+++|++.... |.+-..+..++ ..++.|-.+|-+|. ..|+.+. ...+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq-----PGF~~~L~sI~-l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ-----PGFFSKLYSIF-LSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC-----CcHHHHHHHHH-hccccceeeeeehhhhHhcchhHHhhcCCcccCC
Confidence 45678889999999999999999976511 23334445554 55666677777764 4788643 2333
Q ss_pred C----CH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHH
Q 000143 1130 T----DY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2058)
Q Consensus 1130 ~----~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~ 1203 (2058)
+ .+ ..++...+.+++.+-...|.+++.++.. +|..|++++..|.+.....+..+ | ...-+-+...+.+
T Consensus 76 ~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~g-----D-~~~~~RiLi~l~~ 149 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTG-----D-SLVQHRILITLHH 149 (978)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccc-----h-HHHHHHHHHHHHH
Confidence 2 24 6788888888999999999999999974 46666666666666554433221 1 1233445555555
Q ss_pred hhhhh
Q 000143 1204 AADVL 1208 (2058)
Q Consensus 1204 l~~~~ 1208 (2058)
+...+
T Consensus 150 ilK~L 154 (978)
T KOG1993|consen 150 ILKAL 154 (978)
T ss_pred HHHHH
Confidence 44433
No 91
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.05 E-value=0.075 Score=71.21 Aligned_cols=230 Identities=20% Similarity=0.182 Sum_probs=147.8
Q ss_pred chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-HHHHHHHHHHHhc-------------CCCHHHHHHHHHHH
Q 000143 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMK-------------SDKYGERRGAAFGL 1362 (2058)
Q Consensus 1297 ~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-~~~v~~Ll~~L~~-------------~~~~~vR~~Aa~~L 1362 (2058)
.+..++..|+.-+-+|.+++|..++-++..+....+... ...++.++-.+.. .--..+|.+.+++|
T Consensus 74 ~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 74 PFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred cHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 367788889999999999999877666666555433221 1223333222211 11247899999999
Q ss_pred HHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000143 1363 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442 (2058)
Q Consensus 1363 ~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~ 1442 (2058)
+.+.+...+.... ..++.+.+++... +|+.|++.+.++.+......+.+...+..+++.++..+.|.+..||..|..
T Consensus 154 ~~~l~~~~~s~~~--~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 154 GAYLKHMDESLIK--ETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHHHhhhhHhhH--HHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 9999987655543 6677777777766 899999999988777664444455667788999999999999999999988
Q ss_pred HHHHHHHhhhh---hhHHhHHHHHHHhc---cCCChHHHHHHHHHHHHHHhhCh-hhH--hhhh-hhHHHHHHHHhcCCC
Q 000143 1443 AARAMMSQLSA---QGVKLVLPSLLKGL---EDKAWRTKQSSVQLLGAMAYCAP-QQL--SQCL-PKIVPKLTEVLTDTH 1512 (2058)
Q Consensus 1443 al~~l~~~l~~---~~v~~llp~Ll~~L---~~~~~~~R~~a~~~Lg~la~~~p-~~l--~~~L-~~Iip~L~~~L~D~~ 1512 (2058)
.+-.+...... ..+..++..++..+ .+-.|.+-. -...+..++-... .++ ...+ ..++|.+...+...-
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~s-i~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTAS-IMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHH-HHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 88877766522 22334444444333 233333211 1111222211110 000 1111 367777777888777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 000143 1513 PKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~ 1530 (2058)
..||.+++..+..|.+.-
T Consensus 310 ~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 889999999999998753
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.05 E-value=0.031 Score=74.23 Aligned_cols=359 Identities=17% Similarity=0.173 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHH
Q 000143 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~a 1556 (2058)
.++.+|.++++...-.....-..+++.|+++|...+.++...+...|..++-.-.+...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~--------------------- 326 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDE--------------------- 326 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH---------------------
Confidence 56778888888766555445568999999999888888888888888888643222110
Q ss_pred HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH--hhhhHHHHHhhCCCCHH
Q 000143 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPE 1634 (2058)
Q Consensus 1557 l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~ 1634 (2058)
+. -..++|.|.+.+...+.+.+..+..++.|++. + .+.++.+ ..++|.|..++.|++
T Consensus 327 ---m~------------~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf---d-~~~R~~mV~~GlIPkLv~LL~d~~-- 385 (708)
T PF05804_consen 327 ---MA------------ESGIVEKLLKLLPSENEDLVNVALRLLFNLSF---D-PELRSQMVSLGLIPKLVELLKDPN-- 385 (708)
T ss_pred ---HH------------HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc---C-HHHHHHHHHCCCcHHHHHHhCCCc--
Confidence 00 01244445555555555666666666666653 2 1222222 247888888888754
Q ss_pred HHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc--hhHH-HHhhHHHHHhhccC
Q 000143 1635 VRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVYF-EHILPDIIRNCSHQ 1708 (2058)
Q Consensus 1635 vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g--~~~l-~~llp~Ll~~l~~~ 1708 (2058)
.|..+...|..++..-... ...+++|.+++.+...++..+....+..+-.++..-. ...+ ...++.++......
T Consensus 386 ~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~ 465 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT 465 (708)
T ss_pred hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc
Confidence 4555666665555311111 2346889888877654433232222111111110000 0000 12233344333222
Q ss_pred ChhHHHHHHHHHHHhHHHhch---hHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhccc-----chh--chH
Q 000143 1709 RASVRDGYLTLFKYLPRSLGV---QFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATT-----SLP--LLL 1777 (2058)
Q Consensus 1709 ~~~vR~~al~~l~~la~~~g~---~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~-----~l~--~ll 1777 (2058)
.. .-.+.++.+++..-|. .|.+|+.. +...+..+ ++ +...++++.+.+..-+. .+. .++
T Consensus 466 ~D---~lLlKlIRNiS~h~~~~k~~f~~~i~~----L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~ll 535 (708)
T PF05804_consen 466 RD---PLLLKLIRNISQHDGPLKELFVDFIGD----LAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLL 535 (708)
T ss_pred cc---HHHHHHHHHHHhcCchHHHHHHHHHHH----HHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHH
Confidence 11 2245677777766543 34445444 33444433 33 34555555544322111 111 377
Q ss_pred HhHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC
Q 000143 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2058)
Q Consensus 1778 p~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D 1855 (2058)
|.+.+.+... ...+...++-++|.+... + ..+..+.....-..+-.++...++
T Consensus 536 p~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---------------~----------~~A~lL~~sgli~~Li~LL~~kqe 590 (708)
T PF05804_consen 536 PWLKDLLKPGASEDDLLLEVVILLGTLASD---------------P----------ECAPLLAKSGLIPTLIELLNAKQE 590 (708)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHCC---------------H----------HHHHHHHhCChHHHHHHHHHhhCc
Confidence 7777777432 346777777777776310 0 001111111122233344445555
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1856 VSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVR 1914 (2058)
Q Consensus 1856 ~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~ 1914 (2058)
.++.|-|... ++..+..+ +.+...++ ..+...++..+.|.|.++|.+|-.||.-++.
T Consensus 591 DdE~VlQil~-~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 591 DDEIVLQILY-VFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hHHHHHHHHH-HHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566655443 33333322 22222222 2455666777899999999999888876665
No 93
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.12 Score=68.29 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1454 ~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
+.+..++|.+++.....+...|+..-.-+-..++..|+.+. -.++.+.+-++|+++.+|..|+++++.+.. +
T Consensus 51 ~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~ls~l~~----~ 122 (757)
T COG5096 51 EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRTLSLLRV----K 122 (757)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHHHHhcCh----H
Confidence 34556666666666655666665555555555555453322 233444555666666666666665555422 1
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.-+..+++.+.+.++|+++.||+.|+-++..+.+. +++.
T Consensus 123 --------------------------------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l- 161 (757)
T COG5096 123 --------------------------------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDL- 161 (757)
T ss_pred --------------------------------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhh-
Confidence 11234556666777777788888888888888774 3221
Q ss_pred hhhHhh-hhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1614 IPYIGL-LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1614 ~pyl~~-ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
|.+. +...+..++.|.+|.|...|..++..+...
T Consensus 162 --~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 --YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2233 566677778899999988888887777654
No 94
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.98 E-value=0.00021 Score=94.72 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=155.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
.-++.-+.+.+|..|..|...+..++..-+..... ...++-.+......+.|..+-..++..++.|+..++..|.+|..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 33444445567999999999998888766522211 22455555555444447778888899999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh--hHhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ--QLSQCL 1497 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~--~l~~~L 1497 (2058)
.+.|.++..++|....+|+++..+++.+.. ...+..+.+.+...+.+.+++.|..+..+++......+. .....+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN---STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 999999999999999999999999999976 334577889999999999999999988888887765442 123456
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
..++|.++...+|.+..||.+|..+++.+...++.+.+..++
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 689999999999999999999999999999988866554433
No 95
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.96 E-value=0.45 Score=70.52 Aligned_cols=503 Identities=22% Similarity=0.261 Sum_probs=271.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc------ccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS------SLK-KYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~------~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~ 1407 (2058)
....++.++......++...|..++.++..+++..... .+. ...++..+......+.++..|...+..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l---- 553 (2341)
T KOG0891|consen 478 LTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSL---- 553 (2341)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhh----
Confidence 45667777777788888999999999888888754320 010 0123333333322333666776654433
Q ss_pred HHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH---HHHHHHhcc-CCChHHHHHHHHH
Q 000143 1408 EKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV---LPSLLKGLE-DKAWRTKQSSVQL 1481 (2058)
Q Consensus 1408 ~~lg~~~~p~l~--~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l---lp~Ll~~L~-~~~~~~R~~a~~~ 1481 (2058)
++.|.+.+. ..+..++..+.|+.-.++.++...++.++...+.+.++.+ .+...+.+. +...+++..+...
T Consensus 554 ---~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 554 ---NERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKL 630 (2341)
T ss_pred ---ccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHH
Confidence 234555442 3566677888899899999998888877665444333222 222222222 3344666667777
Q ss_pred HHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhccCCCChhHH--HH
Q 000143 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTK--YS 1556 (2058)
Q Consensus 1482 Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~~~vr--~a 1556 (2058)
+..+....+.-+.++...++-.+...+.|..+.|-.++..+++.++...++. ..+..++.+.+.+.|.....| .+
T Consensus 631 ~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~as 710 (2341)
T KOG0891|consen 631 LCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAA 710 (2341)
T ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHH
Confidence 7777777777788888888888899999999999999999999999987732 336777777777776655443 45
Q ss_pred HHHHHh----ccc--cccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHH-----
Q 000143 1557 LDILLQ----TTF--VNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV----- 1624 (2058)
Q Consensus 1557 l~~L~~----~~f--~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L----- 1624 (2058)
+..+++ ..+ .++.+.|. ++..+...++ .....+|+.+.+.+|+.+.. + ||........
T Consensus 711 lk~l~~l~s~~~~~v~p~~~~P~---ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~--d-----~~~~~~~~~~~~~~~ 780 (2341)
T KOG0891|consen 711 LKALGQLESSTGYVVDPYLDYPE---LLDILINILKTEQSSTIRREAIRLLGLLGAL--D-----PYKHKVTEGTSASKI 780 (2341)
T ss_pred HHHhhhhhcccceEecccccChH---HHHHHHHHHhHhhhhHHHHHHHHHhhhhccc--c-----hhHHHHHhhhhhHhh
Confidence 665554 222 23444443 2333333222 23446777777777755432 2 1211111111
Q ss_pred ----------------------------------HHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhc
Q 000143 1625 ----------------------------------KKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL 1666 (2058)
Q Consensus 1625 ----------------------------------~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L 1666 (2058)
...+.|+.- .-....+.+.-.+....|-+ +.++++|.++...
T Consensus 781 ~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~ 860 (2341)
T KOG0891|consen 781 SSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVM 860 (2341)
T ss_pred hhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHH
Confidence 111111100 00111111222222222221 3344444444433
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCC---hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~---~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll 1743 (2058)
+.. .+..+....+-++....... .+...+++.+.....+.+ ..+...+......+...++..|..|++..++.++
T Consensus 861 r~~-~~~~~~f~~~q~~~~~~~~~-~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l 938 (2341)
T KOG0891|consen 861 RSC-PPNLREFYFQQLTSLVAIVR-QHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTML 938 (2341)
T ss_pred Hhc-CcchhHHHHHhhhhhhhccc-hhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchh
Confidence 311 11122222222222211111 122334555554444433 3444455667778888899999999999999988
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhc--ccchhchHHhHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCC
Q 000143 1744 DGLADENESVRDAALGAGHVLVEHYA--TTSLPLLLPAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2058)
Q Consensus 1744 ~~L~d~~~~VR~~a~~al~~lv~~~~--~~~l~~llp~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~ 1819 (2058)
..+.......|.........+...-. ........|.+.+.+.+. ...+|..+...++.+...
T Consensus 939 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~-------------- 1004 (2341)
T KOG0891|consen 939 TVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQ-------------- 1004 (2341)
T ss_pred eeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHh--------------
Confidence 87743333333333333332221111 112334566666666554 345555555555544211
Q ss_pred CCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 000143 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2058)
Q Consensus 1820 e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~ 1887 (2058)
.-..+...++...++..+.-. ..++...+..+..+....+..+..+.|.+-
T Consensus 1005 ----------------~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1005 ----------------VDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred ----------------hHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 001122233444445554444 778888888888888776666555555544
No 96
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.93 E-value=0.12 Score=67.12 Aligned_cols=136 Identities=18% Similarity=0.343 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC
Q 000143 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
...+|..++-+||.+|-.. ++....++|.+.+-|. .+...+|.+++.+++++..+... ..+.-+|.+...|+|
T Consensus 944 ~~~vra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASLCD 1017 (1529)
T ss_pred chHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHhcC
Confidence 3568999999999998753 3445678898888776 44578999999999988866532 236678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhhcCCccchh
Q 000143 1977 SILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPH 2039 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~~-~~~~ilp~Ll~~L~~-~~~~~~al~aL~~i~~~~~~~~lp~ 2039 (2058)
+++-||..+.--+.++.+..--. .-.-++..++..+.. ++.+.-+=-.+.+++....+..+|+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~ 1082 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPL 1082 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHH
Confidence 99999999999999987642111 123466777777764 4556667777888888777776663
No 97
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.93 E-value=1.5e-05 Score=70.16 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
|++|..|+.+||.++...++.+.++++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
No 98
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.027 Score=67.69 Aligned_cols=456 Identities=18% Similarity=0.147 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHhHhccCC--cchHHHH--------H-HHHhhhCCCCHHHHHHHHHhhHhhHhhc----------c
Q 000143 1274 DLVREGVVIFTGALAKHLAKDD--PKVHAVV--------D-KLLDVLNTPSEAVQRAVSSCLSPLMQSM----------Q 1332 (2058)
Q Consensus 1274 ~~vR~~av~~Lg~La~~l~~~~--p~i~~iv--------~-~Ll~~L~~~~~~V~~av~~~L~~l~~~~----------~ 1332 (2058)
..||..++.++..+.+.+++.. -|...++ | .|.-.|+|++...|.-+...+..+.+.. +
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 3789999999988887654321 0111000 1 2334678888776654444433333221 1
Q ss_pred c------------chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc---hhchHHHHHHHHhCCCCHHHHH
Q 000143 1333 D------------EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK---KYGIAATLREGLADRNSAKRRE 1397 (2058)
Q Consensus 1333 ~------------~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~---~~~il~~L~~~l~~~~~~~~R~ 1397 (2058)
+ ...+.-+.++-.|..+..+.+-....+||+.+++....+.++ .+.+...+...++++ |+.+|.
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~-d~~v~v 168 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHK-DVNVRV 168 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcC-CCChhh
Confidence 1 123344455555655555667778889999999876655543 124556666777776 899999
Q ss_pred HHHHHHHHHHHHhcccchhhHH------------------------HH--------------------------------
Q 000143 1398 GALLAFECLCEKLGRLFEPYVI------------------------QM-------------------------------- 1421 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~------------------------~l-------------------------------- 1421 (2058)
.++..++.+...-.. .|-+. ++
T Consensus 169 s~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~ 246 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVV 246 (728)
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeee
Confidence 999999888653210 11110 00
Q ss_pred --------HHHHHHHcCC--CCHHHHHHHHHHHHHHHHhhhhhh--HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC
Q 000143 1422 --------LPLLLVAFSD--QVVAVREAAECAARAMMSQLSAQG--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2058)
Q Consensus 1422 --------lp~Ll~~l~D--~~~~VR~aA~~al~~l~~~l~~~~--v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~ 1489 (2058)
......+++. .-..||-.|.+.+..++..++-.. ..++...+..++.+....++..+..++..+.+..
T Consensus 247 ~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l 326 (728)
T KOG4535|consen 247 LPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL 326 (728)
T ss_pred cCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence 0000111110 012477788888888877766432 2556666677778877777777777777666553
Q ss_pred hhhHhh----------hhhhHHH--HHHHHhcC-CCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCChhH
Q 000143 1490 PQQLSQ----------CLPKIVP--KLTEVLTD-THPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPNDHT 1553 (2058)
Q Consensus 1490 p~~l~~----------~L~~Iip--~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~~~v 1553 (2058)
..+..+ .+-.++- ......-| .++..+.++|.++.+++..-- +..-+...+.++....|..+..
T Consensus 327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRL 406 (728)
T ss_pred hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHH
Confidence 321111 0111110 11112223 356677888888888865321 1122455666666666554433
Q ss_pred -H-HHHHHHHhcc--ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC
Q 000143 1554 -K-YSLDILLQTT--FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2058)
Q Consensus 1554 -r-~al~~L~~~~--f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~ 1629 (2058)
+ +|+..++-.- ..-..+......-...+.+.+.|..-.+|.+++-.+|++...+ .
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL---------------------~ 465 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL---------------------I 465 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH---------------------H
Confidence 3 5665544200 0001111112222333444556666667777776666665432 2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch---hHHHHhhHHHHHhh-
Q 000143 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNC- 1705 (2058)
Q Consensus 1630 d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~---~~l~~llp~Ll~~l- 1705 (2058)
+..|.+|..+.++.|.+...+ +.. ....+-....+|..+..+|+...+.+.. -.+.+++..-+..+
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~--------~~~--A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~ 535 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKM--------LRS--AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALI 535 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHH--------HHH--HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcc
Confidence 344555555555555554322 000 1111112233666667777666555431 11222322222222
Q ss_pred ----ccCChhHHHHHHHHHHHhHHHhchhH--HHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Q 000143 1706 ----SHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILDGLAD-ENESVRDAALGAGHV 1763 (2058)
Q Consensus 1706 ----~~~~~~vR~~al~~l~~la~~~g~~f--~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~ 1763 (2058)
......||-.++.+++++.+.-.-.| .++.+.++|.+...+.+ .+-.||..|+.++..
T Consensus 536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 22367888889999998876432222 25667788888887754 455678777776653
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.062 Score=70.81 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
|++...+++.++.... ..+.+.++---.-|-...+.-+...+ ..++++..-++++ |+..|..|+.+++.+-
T Consensus 50 G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---LavNti~kDl~d~-N~~iR~~AlR~ls~l~---- 120 (757)
T COG5096 50 GEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---LAVNTIQKDLQDP-NEEIRGFALRTLSLLR---- 120 (757)
T ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---HHHHHHHhhccCC-CHHHHHHHHHHHHhcC----
Confidence 5667888888888877 55666766665556555555432221 3466677777777 8999999988877662
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-Hh-HHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL-VLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~-llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
....++.+++.+.+++.|+++.||+.|+-|+..+.+. +++.+ .. ..-.+...+.|.++.+...|+.++..+-
T Consensus 121 --~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 121 --VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred --hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 4567778999999999999999999999999988643 33333 22 3333444556888888877766665543
No 100
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.019 Score=70.10 Aligned_cols=264 Identities=20% Similarity=0.150 Sum_probs=159.1
Q ss_pred HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhcccch
Q 000143 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSL 1773 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~~l 1773 (2058)
..++-.+.+...|++..+|..++.++++.+...+.....|...++..++.+|-|. +.+|.-.++.++..+........+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 4555566667778899999999999999999888888889999999999988765 477888888888877766554443
Q ss_pred hc-hHH---hHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH
Q 000143 1774 PL-LLP---AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2058)
Q Consensus 1774 ~~-llp---~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L 1849 (2058)
.. +++ .+..++++++...|.++..++|.|.. ++|...+ +.+ +++.. .-+..+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~-l~g~~~e---------~~F-te~v~-------------k~~~~l 392 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK-LAGGGWE---------EFF-TEQVK-------------KRLAPL 392 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH-HcCCCch---------hhh-HHHHH-------------hccccc
Confidence 32 222 34456678899999999999999863 2222111 111 11110 012234
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---cchhhchH
Q 000143 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG---ERVLPSII 1925 (2058)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg---~~~l~~ll 1925 (2058)
...++|..+.|-.++-..+..+..|... ....+++...+. ... |..+. ....|..+. .+.+..+.
T Consensus 393 llhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~--------~~~-~~q~F--yn~~c~~L~~i~~d~l~~~~ 461 (533)
T KOG2032|consen 393 LLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDT--------DMA-RFQAF--YNQWCIQLNHIHPDILMLLL 461 (533)
T ss_pred eeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHH--------hHH-HHHHH--HHHHHHHHhhhCHHHHHHHH
Confidence 4456787777766655555444443331 122222221111 110 11111 111122221 11122222
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhH--HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF--MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1926 p~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~--~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
....-.+++..+.+|..+..-.+....+..++. .++ ..++...+.....|+-++|+..|..|++.+..
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~-c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAA-CSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHH-HHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 333334566677888887776666655554432 222 25666777777899999999999999998753
No 101
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.72 E-value=0.036 Score=73.62 Aligned_cols=355 Identities=14% Similarity=0.159 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-hH--HhHHHHHHHhccCCChHH
Q 000143 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-~v--~~llp~Ll~~L~~~~~~~ 1474 (2058)
.++..+..+++...-...-.-..+++.|.+.+..++..+.-.+...+..++-..... .+ ..++|.+.+.+.+++...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 344556666654432222223467888888888888888888888888876322221 12 568999999999888888
Q ss_pred HHHHHHHHHHHHhhChh--hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-h--HHhHHHHHHhccC-C
Q 000143 1475 KQSSVQLLGAMAYCAPQ--QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E--IASLVPTLLMGLT-D 1548 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~--~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~--i~~lvp~Ll~~l~-d 1548 (2058)
+..++.+|.+++....- ++.. ..++|.+...+.|++ .|..+...|..++..-... . ..+.+|.+++.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 99999999999875332 2322 368899999998754 4556777777776532111 1 1345666666533 3
Q ss_pred CChhHH-HHHHHHHhccccc-cCChh-hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHH
Q 000143 1549 PNDHTK-YSLDILLQTTFVN-TVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625 (2058)
Q Consensus 1549 ~~~~vr-~al~~L~~~~f~~-~~~~~-~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~ 1625 (2058)
+++.+. +.+..+....... +...- .-..+-..+.+.++.+++- ..+.+-|++.. ++. ....+...+..+.
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h--~~~-~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH--DGP-LKELFVDFIGDLA 496 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc--Cch-HHHHHHHHHHHHH
Confidence 444333 2333322211100 00000 0011222333444544432 33467777663 321 1222222333344
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhhcc--c---Cc--cchHHHHHhhcccCCC-hHHHhhHHHHHHHHHHHhchh-HH--
Q 000143 1626 KVLVDPIPEVRSVAARAIGSLIRGMGE--E---NF--PDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTV-YF-- 1694 (2058)
Q Consensus 1626 ~~l~d~~~~vR~~a~~aLg~l~~~lg~--~---~~--~~llp~L~~~L~~d~~-~~~R~~aa~~L~~i~~~~g~~-~l-- 1694 (2058)
..+..++. .+..++++|.++.---+ + .+ ..++|++.+.|..... .+....+...+|.++..-... .+
T Consensus 497 ~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~ 574 (708)
T PF05804_consen 497 KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK 574 (708)
T ss_pred HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 44444332 25677888888763212 2 12 3699999999974432 224445555556554321111 11
Q ss_pred HHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHh--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1695 EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNY--LQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~py--l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+++.+...+... +.+.--.++.+|..+... +...... -..+...++..+.|.++.||..+-.++..+.+
T Consensus 575 sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 575 SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35666666666543 344444455555555433 2211111 14577888999999999999998888877654
No 102
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.035 Score=70.43 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=87.4
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchH---
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH--- 1299 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~--- 1299 (2058)
+.|...+..++-+++.-.+..+-. |...-.-+|.++...|-. .+ + .++. .+-.+..++.....+..-++
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mln-Ge~~p~Llm~IiRfvlps--~~-~---elKK-Lly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLN-GEDLPSLLMTIIRFVLPS--RN-H---ELKK-LLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHc-CCCchHHHHHHhheeecc--Cc-h---HHHH-HHHHHHHHccccCCCcccHHHHH
Confidence 456667777887776655544433 333333344444444322 11 1 2333 34444445443333222223
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhch
Q 000143 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~i 1379 (2058)
-+....-+-|++|++.+|-.....+..+-. ++-..+++|.+.+.|.+. ..-+|+.|..++..+.+.. ...++ +.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckLkE--~ELlepl~p~IracleHr-hsYVRrNAilaifsIyk~~-~~L~p--Da 172 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKLKE--PELLEPLMPSIRACLEHR-HSYVRRNAILAIFSIYKNF-EHLIP--DA 172 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhcCc--HHHhhhhHHHHHHHHhCc-chhhhhhhheeehhHHhhh-hhhcC--Ch
Confidence 234556677899999998755444332211 112345566666655443 4679999999999988763 22222 34
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 000143 1380 AATLREGLADRNSAKRREGALL 1401 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~ 1401 (2058)
-+.+...+..+.|+.....|..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFL 194 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHH
Confidence 4445555555556666555544
No 103
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.14 Score=65.80 Aligned_cols=458 Identities=16% Similarity=0.141 Sum_probs=227.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~ 1462 (2058)
+.+..+++ |...|...-.+++.++.... -+.-+...+.+.....++.+|-.|+++|-.+....--.++.+.
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~ise-----dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery--- 139 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISE-----DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERY--- 139 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccch-----hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHH---
Confidence 33444444 56666666555554433211 1223344555555556777888888877776533222222222
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
+-+++-+.+..++-+|+-.=-.+............ ..+.+..++.+..|+..|..-|.++-+.-+ -.+..++..+
T Consensus 140 ~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~----neiqea~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~ 214 (865)
T KOG1078|consen 140 MKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA----NEVQEAVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKF 214 (865)
T ss_pred HHhHeeccccccchHHHHHHhhhhcccHHHHHHHH----HhhhhccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 22334455554444333222222222222232222 222334444455777766666666543211 0112222222
Q ss_pred Hh-ccCCCChh---HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1543 LM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1543 l~-~l~d~~~~---vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
.. .+.+|-.. +|.+.+.+-+ +......+.|.+...+..+..-+-.+|+..+..+... .+..+.|
T Consensus 215 ~~~~~~~~~A~~~lir~~~~~l~~-------~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--- 282 (865)
T KOG1078|consen 215 TRGSLKSPLAVCMLIRIASELLKE-------NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--- 282 (865)
T ss_pred ccccccchhHHHHHHHHHHHHhhh-------cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch---
Confidence 22 22333221 1222222211 1233445788888999888888888898888877653 2234443
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhh
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ll 1698 (2058)
.+..+...+..+.+.+|.+|.+.|..++....... .-+=+-| +.|-+|. .|..+.-++..+...-.....+.+|
T Consensus 283 -avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm 356 (865)
T KOG1078|consen 283 -AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-TVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLM 356 (865)
T ss_pred -HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-cccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHH
Confidence 56677777888999999999999999987654320 0011111 2222222 4677777777777654445666777
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhcccchhchH
Q 000143 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2058)
Q Consensus 1699 p~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~~l~~ll 1777 (2058)
..+-..+.+-+..-+..+..++..++..+...-.- +++.+...|.++ .-+-+....+++-.++...... -...+
T Consensus 357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~----~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-Ke~~L 431 (865)
T KOG1078|consen 357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV----MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-KERGL 431 (865)
T ss_pred HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-hhHHH
Confidence 76666666555555555556666666655443222 233333333332 1223444455554444322111 11122
Q ss_pred HhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCC
Q 000143 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2058)
Q Consensus 1778 p~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~ 1857 (2058)
..|.+.+.|... +.-+...++-+ |..++... .+. ..+..+|....=.+
T Consensus 432 ~~LCefIEDce~--~~i~~rILhlL-----G~EgP~a~----~Ps---------------------kyir~iyNRviLEn 479 (865)
T KOG1078|consen 432 EHLCEFIEDCEF--TQIAVRILHLL-----GKEGPKAP----NPS---------------------KYIRFIYNRVILEN 479 (865)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHH-----hccCCCCC----Ccc---------------------hhhHHHhhhhhhhh
Confidence 233333322211 11122222222 22221100 000 01111121111123
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~ 1913 (2058)
..||.+|..++..+..+.+ ...|.+...+.+++.|++.++|..|...+..+-
T Consensus 480 ~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5789999888877763322 344566667788899999999998888776665
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.29 Score=62.15 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=191.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcccc-hhhHHHHH
Q 000143 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQML 1422 (2058)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l----~~~~~~~~R~~al~al~~L~~~lg~~~-~p~l~~ll 1422 (2058)
.+..+..+.-+.-.+.-+++.. .+++..+...+ .+. |+..-.-|+.+++.++ ++.+ +.|..++
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-------~dl~klvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~DI- 151 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-------SDLMKLVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADDI- 151 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-------hHHHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhhh-
Confidence 4445555554544555554432 13444443333 333 4555555555555443 2322 3333333
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
|.++ .-++..+.||+.|+-|+-++.+..++-. .......+...|+|.+.++-.++..++..++..-|+....+++..+
T Consensus 152 ~KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 152 PKLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HHHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 2222 3466788999999999988887754322 2456677788889998888888999999999888888777776666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L 1581 (2058)
..|........... ..-.-..++.|.+..=+=.+++...-| .|.+..+.+...+
T Consensus 231 s~L~riv~~~~t~~-------qdYTyy~vP~PWL~vKl~rlLq~~p~~-------------------~D~~~r~~l~evl 284 (938)
T KOG1077|consen 231 SRLSRIVVVVGTSL-------QDYTYYFVPAPWLQVKLLRLLQIYPTP-------------------EDPSTRARLNEVL 284 (938)
T ss_pred HHHHHHHhhcccch-------hhceeecCCChHHHHHHHHHHHhCCCC-------------------CCchHHHHHHHHH
Confidence 55544322110000 000001122333321111122222111 1111122222222
Q ss_pred HHhhcC-----CCHHHH----HH--HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1582 HRGLRE-----RSAETK----KK--AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1582 ~~~L~d-----~s~~vr----~~--A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
.+.|+. .+.++. .. -.++|.-... + |++ ...+...+..|-..+.+...++|.-+.+.+..++..-
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h-~-D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~ 360 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH-L-DSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE 360 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHH-c-CCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc
Confidence 222211 000110 00 1122222222 2 211 1234455666777777888889988888888877541
Q ss_pred cc-cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1651 GE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1651 g~-~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
.. +....-...++..|+.+.+..+|..+..-|-.++. .+..+.++..+++.+...++.+|+....=..-+++.+..
T Consensus 361 ~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 361 FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 10 11222345566778878888899988887766654 334567888888888889999999988877888887777
Q ss_pred hHHHhHHHHHHHHH
Q 000143 1730 QFQNYLQQVLPAIL 1743 (2058)
Q Consensus 1730 ~f~pyl~~ilp~Ll 1743 (2058)
++.=|+.-++..+-
T Consensus 438 Dy~WyVdviLqLir 451 (938)
T KOG1077|consen 438 DYSWYVDVILQLIR 451 (938)
T ss_pred CcchhHHHHHHHHH
Confidence 77667766666554
No 105
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.043 Score=69.72 Aligned_cols=416 Identities=13% Similarity=0.121 Sum_probs=198.0
Q ss_pred HHHHHhhh-hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC--ccchhhHHHHH---HHHhcccCCChhH
Q 000143 1199 LALHSAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDNVSLLFPIF---ENYLNKKASDEEK 1272 (2058)
Q Consensus 1199 ~al~~l~~-~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g--~~~~~~Ll~~l---~~~L~~~~~~~e~ 1272 (2058)
.+++.+.. .+..+..|.++-.++.-.+-.++...++ .+....+++.... .+..++++-++ .+-|++ +
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH------P 111 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH------P 111 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccC------c
Confidence 34444332 3344555655444443345455554443 2233344443322 12344444333 233333 3
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc---ccchHHHHHHHHHHHhcC
Q 000143 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLMKS 1349 (2058)
Q Consensus 1273 ~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~---~~~~~~~v~~Ll~~L~~~ 1349 (2058)
+..+|...+.+|.++-+ ..-+++++|.+.+.|.+++..||+.+.-|+..+.... -++.++++...+ ..+
T Consensus 112 NEyiRG~TLRFLckLkE-----~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL---~~e 183 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLKE-----PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFL---LTE 183 (948)
T ss_pred hHhhcchhhhhhhhcCc-----HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHH---Hhc
Confidence 44799999999888743 1235678888889999999999999988887776553 223455544443 345
Q ss_pred CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000143 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK--RREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2058)
Q Consensus 1350 ~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~--~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~ 1427 (2058)
.|+...|.|...|...-. ...+.++...+.+-.+|. ..-..+..+-..+..-+. --...+..++.
T Consensus 184 ~DpsCkRNAFi~L~~~D~---------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~ 250 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTTDP---------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYN 250 (948)
T ss_pred cCchhHHHHHHHHHhcCH---------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHH
Confidence 567777777665543321 122333333332211111 111111111111111000 01233445555
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~ 1506 (2058)
.+...++.|+..|..++-.+.. .+..++.....+++.+. .++-+++.-.+..|..+..... ..+.+++--++.
T Consensus 251 lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il~~l~mDvLr 324 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KILQGLIMDVLR 324 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence 6666677777766555544421 12223333333333332 3344555444555555542222 223344445566
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
+|+.++-.||..+..-.-.++. ...+.+++..|.+-+.+.... -.
T Consensus 325 vLss~dldvr~Ktldi~ldLvs---srNvediv~~Lkke~~kT~~~--------------------------------e~ 369 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIALDLVS---SRNVEDIVQFLKKEVMKTHNE--------------------------------ES 369 (948)
T ss_pred HcCcccccHHHHHHHHHHhhhh---hccHHHHHHHHHHHHHhcccc--------------------------------cc
Confidence 7788888888877665544443 233445555554433222110 01
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L 1666 (2058)
|.+..-|..-.+.+...+. .+..+...+++.++..+.|.++..-......+....+.+.. ....++..|++.+
T Consensus 370 d~~~~yRqlLiktih~cav------~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAV------KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETF 442 (948)
T ss_pred ccchHHHHHHHHHHHHHhh------cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhh
Confidence 1122233333333333322 12334556677777777776655333333333322222211 1123444455554
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
..-.+...-.+++|.+|+.+.+.+
T Consensus 443 ~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 443 PQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhcccccchhHHHHHHHHHhhhH
Confidence 432233334467777777766554
No 106
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.014 Score=71.14 Aligned_cols=232 Identities=19% Similarity=0.220 Sum_probs=154.6
Q ss_pred cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000143 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2058)
Q Consensus 1296 p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~ 1371 (2058)
+-+..++..+.+...+|+..++..++.||+......++.. +..+..++-.|.+..+..+.-.+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 4577888889999999999999999999988877654433 445666667777777788999999999888775544
Q ss_pred cccchh--chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHH---HHHHHHcCCCCHHHHHHHHHHHH
Q 000143 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQML---PLLLVAFSDQVVAVREAAECAAR 1445 (2058)
Q Consensus 1372 ~~l~~~--~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~ll---p~Ll~~l~D~~~~VR~aA~~al~ 1445 (2058)
..+..+ ++.-.+.+...+. +++.|-++..+||.++.-.|+.-+.+. .++. ..++--+.|+++.|-.++...+.
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 333222 3444455555665 889999999999999998886544432 2332 23444678999988877766665
Q ss_pred HHHHhhhhhhH--------------------------HhHHHHHHHhc-------cCCCh-HHHHHHHHHHHHHHhhChh
Q 000143 1446 AMMSQLSAQGV--------------------------KLVLPSLLKGL-------EDKAW-RTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1446 ~l~~~l~~~~v--------------------------~~llp~Ll~~L-------~~~~~-~~R~~a~~~Lg~la~~~p~ 1491 (2058)
.+..++..+.+ +.+.|.++-.+ -+..| .+|.++...-+.+......
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 54433322211 12222222221 23467 6777777766666655444
Q ss_pred hHhhh--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1492 ~l~~~--L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..++ ...+...+..+..|+-|+|+..|..|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 43332 23566677778889999999999999987653
No 107
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.59 E-value=1.2 Score=66.34 Aligned_cols=532 Identities=18% Similarity=0.197 Sum_probs=254.4
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh-------H
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-------I 1535 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-------i 1535 (2058)
+++.+.+..-..|.+|+..+..++...|..+-+++..++..+.....|+++.+|..||.++........+.. +
T Consensus 139 ~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~ 218 (2341)
T KOG0891|consen 139 LIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWY 218 (2341)
T ss_pred HHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHH
Confidence 333334444556778889999999999999999999999999999999999999999999998877665544 2
Q ss_pred HhHHHHHHhccCCCChhHHH---HHHHHHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000143 1536 ASLVPTLLMGLTDPNDHTKY---SLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~---al~~L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~ 1610 (2058)
+..+...-..+..+...... ..+.+.. ..|....+ ...+-.....++++. .++.......+.++......
T Consensus 219 ~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~lk~~--~i~~~l~~~~~~~~~~~~~~ 293 (2341)
T KOG0891|consen 219 QRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYD---STCVRQAKGKLLKSI--VIRMTLSQILPLLAAFNPAK 293 (2341)
T ss_pred HHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHhccc--cHHHHHHhccHHHhhhhhhh
Confidence 22222111111111100000 0000000 00000000 000000011111221 11111111112222211111
Q ss_pred CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC---ccchHHHHHhhcccCCChHH-H-hhHHHHHHHH
Q 000143 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVE-R-SGAAQGLSEV 1685 (2058)
Q Consensus 1611 ~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~---~~~llp~L~~~L~~d~~~~~-R-~~aa~~L~~i 1685 (2058)
... .|+...|..++..+... ...+...++.++-+++..+ ...+...+.+.+....-... + .....+++.+
T Consensus 294 ~~~-~~l~~~~~~~l~~~~~~----~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (2341)
T KOG0891|consen 294 FQV-KYLHTEMDHLLSILRKE----KTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLL 368 (2341)
T ss_pred hHH-HHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHH
Confidence 111 45555555555554411 1567778888888777652 22222333333322111101 1 1344566777
Q ss_pred HHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHH--------------hccCC
Q 000143 1686 LAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD--------------GLADE 1749 (2058)
Q Consensus 1686 ~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~--------------~L~d~ 1749 (2058)
+..+|+..+..+...++..+... ....++........++.-.+.-+ +++-..+..++. .++.+
T Consensus 369 ~~a~~~~~~~~~~~~il~~~~~~~~~~~l~e~l~~l~~rl~~l~~~i~-~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p 447 (2341)
T KOG0891|consen 369 ASALGPADQKDLNKDILEQMFKCTLSDSLLERLFILSQRIPKLGQSIQ-DRLLNMTSQVLSGKAFIQPGQFTVLPKLAIP 447 (2341)
T ss_pred hhccCHHHHHhHHHHHHHHHhcCCchHHHHHHHHHHHHhccchhhHHH-HHHHHHHHHHHhCccccCccccCccchhccc
Confidence 77777776666666666665543 34444444444444433222211 111111111111 00000
Q ss_pred C------HHHHHHHHHHHHHHHHH-hcccchhchHHh-HhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCC
Q 000143 1750 N------ESVRDAALGAGHVLVEH-YATTSLPLLLPA-VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1821 (2058)
Q Consensus 1750 ~------~~VR~~a~~al~~lv~~-~~~~~l~~llp~-L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~ 1821 (2058)
. ..+-..+..++..+-.. +........+.. +......++..+|..+...+..++......+.+
T Consensus 448 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~--------- 518 (2341)
T KOG0891|consen 448 KAILQKTGDSTDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQT--------- 518 (2341)
T ss_pred chhhhhcccccHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcc---------
Confidence 0 00001122233322111 111111112222 223345567788888766666654321110000
Q ss_pred CCcchHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1822 EGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1822 ~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
..+ . . ..+..++..+..+ ..|.+..+|......+. ....-.---|..+......+.+....
T Consensus 519 --~~~--~----~-----~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~ 580 (2341)
T KOG0891|consen 519 --SPH--A----L-----QVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFA 580 (2341)
T ss_pred --cch--H----H-----HHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhh
Confidence 000 0 0 1222334444333 56666666654433322 00000011123333344556777777
Q ss_pred HHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCC----CChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC
Q 000143 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKD----PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d----~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
.+..+...+|.++..-..-+++.+--.....++. ....+......-+.+++... +.-..+|++.++..+...+.|
T Consensus 581 ~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~-~~~i~~~v~~~l~~~~~~~~~ 659 (2341)
T KOG0891|consen 581 IQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS-PVLISPYVGPILLVLLPKLQD 659 (2341)
T ss_pred hHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH-HHHHHhhcCchHHHHHHHHhc
Confidence 7887777777665432211233332222222221 11111112222223333222 345678888999889889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhhcC
Q 000143 1977 SILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~---~~~~~ilp~Ll~~L~~~---~~~~~al~aL~~i~~~~~ 2033 (2058)
++..+-.++..+++.++...|. ...++.++.+.+.+.+. ..+.+++..+..+.+...
T Consensus 660 ~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 660 PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 9999999999999999998883 24567777777777653 357889999988887653
No 108
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.00083 Score=75.12 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
++.+|..+..++|+++...+ ..+...+|.+...+.|+++.+|..+...+..++..- ...+-+.++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----MIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ceeehhhhhHHHHHHHcCC
Confidence 46799999999999998864 566788899999999999999999999999888542 1123356667777888999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCC
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~ 2014 (2058)
|++||..|...|..+....++..+...+|.++..|.+
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999876666778888888888875
No 109
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.024 Score=72.82 Aligned_cols=196 Identities=15% Similarity=0.111 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
.-+..+++.+..+.|+.....|..-|..++.-...+ .++...++|.|...++++.+...--.|+.|+.++++.+++.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 356677777777766777777777776665422222 22333688999999999989999999999999999999875
Q ss_pred chhhHH-HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh
Q 000143 1414 FEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2058)
Q Consensus 1414 ~~p~l~-~llp~Ll~~l-~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p 1490 (2058)
..-.+. ..+|.++..+ .-+--+|.+.+.+++..|.+..+...+ ..-+...+.+++==.-..++.|+....+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 544443 3778777544 345567899999999999887776554 2334444455432233455667777777777666
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
.+-..++-+.+|.|...|+..+.++-+.+|-|+.++++.+.+
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 555566778899999999988889999999999999987763
No 110
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.57 E-value=0.0023 Score=77.21 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHh
Q 000143 1839 RDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG-RALGELVRKL 1916 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~-~~Lg~L~~~l 1916 (2058)
+++|+++|..++..+.| .+...|.-|+.++..++.+-+..+.+.....+..++..-.|+..++-..|. .|+..+....
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 35677888888888888 778889999999999999999888888887777777777777665555555 4555555555
Q ss_pred CcchhhchHHHHhhhcCCCChhHHHHHHH-HHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1917 GERVLPSIIPILSRGLKDPSASRRQGVCI-GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1917 g~~~l~~llp~L~~~l~d~~~~vR~~a~~-aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+......+-|.+.. . + +-|..+|. .+.++++..+.+.+.+.++.+.|.+.++....+..||..|.+|+-.+...
T Consensus 404 P~~~I~~i~~~Ilt---~-D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 404 PLQCIVNISPLILT---A-D-EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred chhHHHHHhhHHhc---C-c-chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 55555566666554 2 2 23444444 89999999999999999999999999999999999999999999999999
Q ss_pred hCh
Q 000143 1996 AGM 1998 (2058)
Q Consensus 1996 ~g~ 1998 (2058)
+|.
T Consensus 479 vG~ 481 (516)
T KOG2956|consen 479 VGM 481 (516)
T ss_pred HhH
Confidence 984
No 111
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.46 E-value=0.0081 Score=72.94 Aligned_cols=191 Identities=19% Similarity=0.184 Sum_probs=138.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhh--ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-----c
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----N 1532 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~--~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-----~ 1532 (2058)
+...+..+.++.-..|.+++..+..+... .++.+..+...++..+.+.++-...+-+..|+++++-++-.++ +
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33445556667778888888877776643 4566777778899999999987777777788898988887765 2
Q ss_pred hhHHhHHHHHHhccCCCChh--HH-HHHHHHHhccccccCChhhHhhHHHHHHHh-----hc-C---------CCHHHHH
Q 000143 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG-----LR-E---------RSAETKK 1594 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~--vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~-----L~-d---------~s~~vr~ 1594 (2058)
..+..+.|.|.+.+.|.... .| .|+.+|+-..|+...+......++..+... .+ + +++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 34688999999999988653 45 567777766676655544444333443311 11 1 2356888
Q ss_pred HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc
Q 000143 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2058)
Q Consensus 1595 ~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg 1651 (2058)
.|...++-+...+ +...+..++...+|.|..+|..++.+||.+|.++|+.+.+...
T Consensus 205 aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999888764 3344667778889999999999999999999999999988665
No 112
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.44 E-value=0.00091 Score=69.36 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhHH-hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v~-~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
+++.+...+.|.++.+|..+..++..++...+. ..++ .++|.+.+.+.+++++++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888999999999999999999865332 2233 789999999999999999999999999998765433332
Q ss_pred h-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1497 L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
. ..+++.+.+.+++.+..+|+.++++|..+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2 3589999999999999999999999998863
No 113
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.13 Score=66.34 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=109.5
Q ss_pred HhhhhHHHHHhhCCC-CHHHHHHHHHHHHHHHHhhccc--C--ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1617 IGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l~~~lg~~--~--~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
++.++|.|..++++. ++++...|++|+..+++.+.+. . -...+|.|.+.|..=.--++-..+.++|..+.+.-+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 457899999999875 7899999999999999998765 2 2358898888886433344556677777776665554
Q ss_pred hHHH-HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 VYFE-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~~l~-~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
..+. .-+...+..+.--.-.++..++....++|..+..+=-.|+-..+|.|...|...+..+-+.++-++..++..+..
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 4221 111112222222244567778888888888886654467778999999999998888888888888888887653
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.44 E-value=0.00012 Score=64.28 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1393 ~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.+...+.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999988888889999999999999999999999999999998754
No 115
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.98 Score=58.62 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
..+.=.+.+++...+...|+...-+++.+... .+++-.+...+..-....+...|..|+..|-.+..+..- .
T Consensus 63 te~ff~~tKlfQskd~~LRr~vYl~Ikels~i--sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~------~ 134 (865)
T KOG1078|consen 63 TELFFAITKLFQSKDVSLRRMVYLAIKELSKI--SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTML------Q 134 (865)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc--chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchh------H
Confidence 34444566677777888888877777766321 122223334444445555666777777776666543211 1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
.+-..+.+..-|.++.|+.+|.
T Consensus 135 ~iery~kqaivd~~~avSsaal 156 (865)
T KOG1078|consen 135 AIERYMKQAIVDKNPAVSSAAL 156 (865)
T ss_pred HHHHHHHhHeeccccccchHHH
Confidence 2222233455677777666554
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.37 E-value=0.0011 Score=64.66 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=70.2
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~~l-~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+|.+++.+ +|+++.||..+..+++.+ +-...+|.+.+.+.|++|.+|..|+.+||.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46777777 899999999999988844 224678889999999999999999999998742 467
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000143 1501 VPKLTEVLTD-THPKVQSAGQTALQ 1524 (2058)
Q Consensus 1501 ip~L~~~L~D-~~~~VR~aA~~aL~ 1524 (2058)
++.|.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 46778999999885
No 117
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.32 E-value=0.7 Score=58.91 Aligned_cols=420 Identities=15% Similarity=0.118 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhhhh------hHHhHHHHHHHhcc-
Q 000143 1398 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 1468 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~-~~VR~aA~~al~~l~~~l~~~------~v~~llp~Ll~~L~- 1468 (2058)
+....++..+.+-...+...+. ..++.++..+.+++ ..+++.+.++++.+...-+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4445566666554444555554 46788999999988 899999999999998654321 12455555544443
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhcc
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGL 1546 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l 1546 (2058)
+.+...+..+. .....+.....+.--+-..+...+.-++.-.+..+|.+|..++.+-...+.|+.. ..++.. +
T Consensus 152 ~lk~~~~l~~~-~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~----L 226 (678)
T KOG1293|consen 152 ELKYISRLDVS-RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL----L 226 (678)
T ss_pred hhhhhhhhhhh-hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH----H
Confidence 22222222111 1111111111122222223333333334444788999999998874444433221 111111 1
Q ss_pred CCCChhHHHHHHHHHhccccccCChhhHhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH--
Q 000143 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-- 1622 (2058)
Q Consensus 1547 ~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp--~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-- 1622 (2058)
.|. .+.+ .+.+.+++++...|-.++.++..++.. +...+-.++.....+
T Consensus 227 ~d~--------------------------~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~~dmg 279 (678)
T KOG1293|consen 227 KDK--------------------------GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIFFDMG 279 (678)
T ss_pred hcc--------------------------ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceeeccCc
Confidence 111 0111 234455666666667777777777663 211121111111111
Q ss_pred -------HHHHhhCCCCHHHHHHHHHHHHH---HHHhhcc-cCccchHHHHHhhccc-----CCChHHHhhHHHH---HH
Q 000143 1623 -------EVKKVLVDPIPEVRSVAARAIGS---LIRGMGE-ENFPDLVSWLLDALKS-----DNSNVERSGAAQG---LS 1683 (2058)
Q Consensus 1623 -------~L~~~l~d~~~~vR~~a~~aLg~---l~~~lg~-~~~~~llp~L~~~L~~-----d~~~~~R~~aa~~---L~ 1683 (2058)
.......||.+..-..+..-+.. ++..+.. +|-....|...+.+.. ......|.-++.. +.
T Consensus 280 d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~ 359 (678)
T KOG1293|consen 280 DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILN 359 (678)
T ss_pred hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhh
Confidence 11223445554432222222222 2222221 1222223333232221 0111122222111 11
Q ss_pred HHHHHhchh---HHH--HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc---hhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1684 EVLAALGTV---YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1684 ~i~~~~g~~---~l~--~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g---~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
..+...|.. ++. .++..+.......+..++.+++.++-.++.... .. +--..++.++++.+.|++..|..
T Consensus 360 ~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~ 437 (678)
T KOG1293|consen 360 HLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMG 437 (678)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHH
Confidence 112222211 111 122222222223467788888888877666432 22 23356888899999999999999
Q ss_pred HHHHHHHHHHHHhccc---ch-hchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHH
Q 000143 1756 AALGAGHVLVEHYATT---SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~---~l-~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~ 1831 (2058)
.++.++..++-.|+.- -+ ...+..+.+...+.+..+|..++..+.++.|.. ++. ...
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~-----~k~ 498 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE-----EKF 498 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH-----HHH
Confidence 9999999998887643 12 125677888888999999999999999987531 100 000
Q ss_pred HHHHHhChhhHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhh
Q 000143 1832 AIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~ 1878 (2058)
. ...++-.. +....+|+++.|.+.+..++..+.-+....
T Consensus 499 ~--------~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 499 Q--------LLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred H--------HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 1 11122222 223368999999999999988887554433
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.00088 Score=65.37 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=69.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc
Q 000143 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2058)
Q Consensus 1578 lp~L~~~L-~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~ 1656 (2058)
+|.|.+.+ +++++.+|..++.+++.+.. +..+|.+...+.|+++.||..++.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35566666 88899999999888884321 2578889999999999999999999998752 4
Q ss_pred chHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1657 ~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
+.++.|.+.+.++.+..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 688889898888777777888888875
No 119
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.27 E-value=1.3 Score=58.02 Aligned_cols=144 Identities=20% Similarity=0.276 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCCh
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~ 1937 (2058)
..+|..+.-+++.++-..++-.+.++|.+...+- .+....+|...+-++|++|..+.. .....+|.+...|.|+++
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe---~~~~~aiRnNiV~am~D~C~~YTa-m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELE---YNTAHAIRNNIVLAMGDICSSYTA-MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhHHHHhcceeeeehhhHHHHHH-HHHHhhHHHHHHhcCchH
Confidence 4678888888888877666666666666655542 345677888888899999876431 246788999999999999
Q ss_pred hHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHH
Q 000143 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLL 2009 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~-~~~~ilp~Ll 2009 (2058)
-+|..+.+-|..++..- +-.|-..++=-+.-.+-|.++++|.-|-..|+.+.+.-.+. ....++.+++
T Consensus 1021 iVRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 99988888788777431 22333444444445667999999999999999998754432 2334455444
No 120
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.21 E-value=0.013 Score=65.46 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCCh
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~ 1937 (2058)
+.||..++.+++.++...|..+.+++|.+. .+|.|+++.+|..|..++..|+..---..-+.++..+...+.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~----~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLY----KCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 578999999999999888877667766655 5579999999999999999998753233456676777788899999
Q ss_pred hHHHHHHHHHHHHHHhhChhhhH
Q 000143 1938 SRRQGVCIGLSEVMASAGKSQLL 1960 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~ 1960 (2058)
++|..+...+.++.....+..+.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~ 100 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIY 100 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHH
Confidence 99999999999998875554443
No 121
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.017 Score=65.27 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=114.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
+..+.+.+.|++........-+++++. ...-+|.+..-+.+ ..+-+|..|.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ-------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc-------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 455566677765555555555665542 23456777776664 457788899999998762 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC--c-----hhHH---------hHHHHHHhccCCCChhH--H-HHHHHH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N-----PEIA---------SLVPTLLMGLTDPNDHT--K-YSLDIL 1560 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~-----~~i~---------~lvp~Ll~~l~d~~~~v--r-~al~~L 1560 (2058)
+.+.+.+..+|+...||..+.-|+.++--.-. . |+.. .-+..+-..+.|++... | .++-.|
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~L 180 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYL 180 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHh
Confidence 55666666789999999988888877732110 0 1110 00111111111211110 1 011000
Q ss_pred HhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHH
Q 000143 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSV 1638 (2058)
Q Consensus 1561 ~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~ 1638 (2058)
- +.. -..-+..+..++.+.|.-.|..++-++|.|-+ +.-+|.|.+.|.| .++-||..
T Consensus 181 R------n~g---~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~~E~pMVRhE 239 (289)
T KOG0567|consen 181 R------NIG---TEEAINALIDGLADDSALFRHEVAFVFGQLQS------------PAAIPSLIKVLLDETEHPMVRHE 239 (289)
T ss_pred h------ccC---cHHHHHHHHHhcccchHHHHHHHHHHHhhccc------------hhhhHHHHHHHHhhhcchHHHHH
Confidence 0 000 01123444555666666666666666665432 1234445555443 35667777
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
|++|||.++. ++.++.|.+.+. |+...+|..+..+|.
T Consensus 240 aAeALGaIa~-------e~~~~vL~e~~~-D~~~vv~esc~vald 276 (289)
T KOG0567|consen 240 AAEALGAIAD-------EDCVEVLKEYLG-DEERVVRESCEVALD 276 (289)
T ss_pred HHHHHHhhcC-------HHHHHHHHHHcC-CcHHHHHHHHHHHHH
Confidence 7777777662 345666655555 444446666555554
No 122
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.14 E-value=0.0016 Score=67.43 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=87.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG- 1455 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~- 1455 (2058)
++++.+.+.+.+. ++..|..++.+++.++.........++. .++|.+++.+.|+++.|+..+..++..++...+...
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 5677888888876 7999999999999998764333334444 788999999999999999999999999987654321
Q ss_pred --H-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1456 --V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1456 --v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
+ ..+++.+.+.+.+.+..+|..++.+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 347899999999999999999999998875
No 123
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.063 Score=69.51 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=103.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHh
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2058)
+......+.|+.+.+|..+...+..+.+.-... .-..++...++.|+++++. +-..+.+++..++... -+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy----~e~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVY----PEDI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhc----chhh
Confidence 344555677888899999999999998843222 2346888888999966655 6677777777766553 3467
Q ss_pred hHHHHHhhccC----ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1698 LPDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1698 lp~Ll~~l~~~----~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
+|.+.+...+. ....|--+-.+++.+....|+-+..|...++..++.+..|++...|..++.+++.++..
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 77777655432 12333334488999999999999999999999999999988877788887777776643
No 124
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=1.8 Score=56.15 Aligned_cols=285 Identities=18% Similarity=0.159 Sum_probs=153.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccC--CChhHHHHH-HHHHHHHHHHHHhHhccCCcchH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA--SDEEKYDLV-REGVVIFTGALAKHLAKDDPKVH 1299 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~--~~~e~~~~v-R~~av~~Lg~La~~l~~~~p~i~ 1299 (2058)
+.-+|-...+|-.+=.....+.+.++.-..+.++.++.+..+... ..+.-.+.+ +.++..+.|.-+.++...-+.-+
T Consensus 404 q~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~ 483 (978)
T KOG1993|consen 404 QSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDK 483 (978)
T ss_pred cccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 344454555565444444555565554445555555544333211 111122233 45555666666666654322111
Q ss_pred HHHHHHHhhhCC---CCHHHHHHHHHhhHhhHhhc-ccchHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhC--cc
Q 000143 1300 AVVDKLLDVLNT---PSEAVQRAVSSCLSPLMQSM-QDEAPTLVSR-LLDQLMKSDKYGERRGAAFGLAGVVKGFG--IS 1372 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~---~~~~V~~av~~~L~~l~~~~-~~~~~~~v~~-Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g--~~ 1372 (2058)
=+...++..+.. ...-.|+.++-.++..+..- ..+....+-. +++-+..++|..+|.+++..+...+.... .+
T Consensus 484 Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 484 WLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 122233333332 12456777887787776532 2233333333 33334445588999999999999988543 22
Q ss_pred ccchh--chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHH---HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1373 SLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM---LPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1373 ~l~~~--~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~l---lp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
.+..+ .+...+...+..-..-+.|...+..++.+.+..++.+.||..++ +|.+-+.- .+++-.|.+-..++..+
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNL 642 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHH
Confidence 22111 12222233344333566788899999999999998888997654 45544333 36788899999999999
Q ss_pred HHhhhhhh--HHhHHHHHHHhccCC-ChHH---HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1448 MSQLSAQG--VKLVLPSLLKGLEDK-AWRT---KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1448 ~~~l~~~~--v~~llp~Ll~~L~~~-~~~~---R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
+..++... ...++-++++.-.|. ++.. -..+.++-+......+ .+.+.+-.++|.+...+.
T Consensus 643 V~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIE 709 (978)
T ss_pred HHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHH
Confidence 98887643 233443444433332 2221 2335555555554432 233334455555555443
No 125
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=1.7 Score=55.68 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~ 1492 (2058)
.++.+++..++....-++..||...+..+..++..... ++ .+.+...++.++.|..+.+|..|+.+|..+-....+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 46778888999999999999999999999999874332 33 3788899999999999999999999998875322111
Q ss_pred HhhhhhhHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHH-HHHHhccccccCC
Q 000143 1493 LSQCLPKIVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVD 1570 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al-~~L~~~~f~~~~~ 1570 (2058)
-. .+...+... -+|++++||.+|...+..= ..-.|.++....|.+...|..+ +-+.. -+ ...
T Consensus 161 e~----~v~n~l~~liqnDpS~EVRRaaLsnI~vd---------nsTlp~IveRarDV~~anRrlvY~r~lp--ki-d~r 224 (892)
T KOG2025|consen 161 EC----PVVNLLKDLIQNDPSDEVRRAALSNISVD---------NSTLPCIVERARDVSGANRRLVYERCLP--KI-DLR 224 (892)
T ss_pred cc----cHHHHHHHHHhcCCcHHHHHHHHHhhccC---------cccchhHHHHhhhhhHHHHHHHHHHhhh--hh-hhh
Confidence 10 233333333 3799999999988766331 2345667777777776666322 22221 00 111
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHH-HHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LIR 1648 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~-L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~-l~~ 1648 (2058)
.-+...-+-.+..++.|++..+|..+...+.. .... .+ ..+++.|..+=...+.+|+..+.+|+=. +..
T Consensus 225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~-~d--------gni~ElL~~ldvsnss~vavk~lealf~~v~e 295 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF-SD--------GNILELLERLDVSNSSEVAVKALEALFSGVRE 295 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh-cc--------ccHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 12234456678889999999998877665532 1111 11 1244444444344555777777777655 333
Q ss_pred hhcc
Q 000143 1649 GMGE 1652 (2058)
Q Consensus 1649 ~lg~ 1652 (2058)
..|.
T Consensus 296 ~v~~ 299 (892)
T KOG2025|consen 296 DVGS 299 (892)
T ss_pred Hhhh
Confidence 3443
No 126
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.82 Score=53.00 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=74.6
Q ss_pred CHHHHHH---HHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhh----hhhHHHH
Q 000143 1433 VVAVREA---AECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQC----LPKIVPK 1503 (2058)
Q Consensus 1433 ~~~VR~a---A~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~----L~~Iip~ 1503 (2058)
++.-|+. +..|+.++.+..-+.. .++++|.+-.++..++-.+|..+|..+|.+.+.+.. ..+.. -..|+|.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3344554 6788888876554433 488899999999999999999999999999988763 22221 2468888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1504 LTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
++.+....+..|.++|.+++++++.
T Consensus 133 ildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 8889988999999999999999975
No 127
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.038 Score=71.36 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=145.6
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchH
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ll 1777 (2058)
+...+..+.|+...+|.+++..+..+.+.-...-.-....++...+..++|+++.|--++.+++..+++.|.++ ++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il 804 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----IL 804 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hH
Confidence 34445566788889999999999888874333222355679999999999999999999999888888888766 55
Q ss_pred HhHhhhcCCC------CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChh---hHHHHHHH
Q 000143 1778 PAVEDGIFND------NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD---KRNEVLAA 1848 (2058)
Q Consensus 1778 p~L~~~l~d~------~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~---~~~~vL~~ 1848 (2058)
|.+.+...+. +.+++.. +.++.+ +..+|+- +++.+...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~-------------------------------~qa~Gel~~~y~~~Li~t 851 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKV-------------------------------AQALGELVFKYKAVLINT 851 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHH-------------------------------HHHhccHHHHHHHHHHHH
Confidence 5554422111 1122211 222222 3334432 34445555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcchhh-----
Q 000143 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLP----- 1922 (2058)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~----- 1922 (2058)
++.+..|++..-|..++..++.++..+.....+++..++..++.. ..|...-+|.+|+..+.++....|.+.+|
T Consensus 852 fl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 852 FLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 555666888889999999999998766555556666666655543 45778899999999999999998876544
Q ss_pred --chHHHHhhhcC-CCChhHHHHHHHHHHHHHHh
Q 000143 1923 --SIIPILSRGLK-DPSASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1923 --~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~ 1953 (2058)
+....+..... +++...|..+|.++.++-..
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 22233333333 34455788888877765443
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.03 E-value=0.028 Score=68.28 Aligned_cols=186 Identities=25% Similarity=0.217 Sum_probs=131.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc--c---cCccch
Q 000143 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--E---ENFPDL 1658 (2058)
Q Consensus 1584 ~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg--~---~~~~~l 1658 (2058)
.+.+++..+|..+...+-.+...---++.+..+...+++.+...+.....+-+..|+++++.++-.+| + +.+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34566678888877766655432112234445566788888888887776777789999999998877 3 267889
Q ss_pred HHHHHhhcccCC-ChHHHhhHHHHHHHHHHHhchh--HHH---HhhHHHHHhh--c----------cCChhHHHHHHHHH
Q 000143 1659 VSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV--YFE---HILPDIIRNC--S----------HQRASVRDGYLTLF 1720 (2058)
Q Consensus 1659 lp~L~~~L~~d~-~~~~R~~aa~~L~~i~~~~g~~--~l~---~llp~Ll~~l--~----------~~~~~vR~~al~~l 1720 (2058)
.|.|...+.+.. ....|..++.+|+-+.-..|.+ ... +.|..++... + .+++.+..+++.++
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 999988887543 3456777888887665544433 333 3444332211 1 12467999999999
Q ss_pred HHhHHHhch-hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1721 KYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1721 ~~la~~~g~-~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~ 1769 (2058)
+.+....+. .+..++...+|.+...|..++.+||.+|-+++..+.+...
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999987765 5677888899999999999999999999999988876544
No 129
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.19 Score=63.89 Aligned_cols=210 Identities=18% Similarity=0.114 Sum_probs=140.9
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
-++.++..+.++...++..||..+++++..+........ ...+..+...+...+.|..|.||..|..||..+-..-++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid--d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID--DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC--HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 456677778888888999999999999988765322211 234566777788888899999999999999988743333
Q ss_pred cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1653 ~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
+. -++...+...+++|++.++|..+...++. -...+|.++....|-+..+|..+..-+ ...+...+
T Consensus 160 ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v---------dnsTlp~IveRarDV~~anRrlvY~r~---lpkid~r~- 225 (892)
T KOG2025|consen 160 EE-CPVVNLLKDLIQNDPSDEVRRAALSNISV---------DNSTLPCIVERARDVSGANRRLVYERC---LPKIDLRS- 225 (892)
T ss_pred Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc---------CcccchhHHHHhhhhhHHHHHHHHHHh---hhhhhhhh-
Confidence 32 35677788888899999999987766542 135677888888888777777554322 11111111
Q ss_pred HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~L 1802 (2058)
--..+-+-.+-.++.|.+..|+.++.+++..=+-.+.... ++++.+.++- .+.+++..+++.+-..
T Consensus 226 lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgn----i~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGN----ILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcccc----HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1233556677789999999999998888765443333321 3344444433 3447777777766553
No 130
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.15 Score=58.67 Aligned_cols=251 Identities=15% Similarity=0.151 Sum_probs=147.4
Q ss_pred HHHHHHHhHHHh-chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccch--------hchHHhHhhhcCC
Q 000143 1716 YLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL--------PLLLPAVEDGIFN 1786 (2058)
Q Consensus 1716 al~~l~~la~~~-g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l--------~~llp~L~~~l~d 1786 (2058)
++.++..+.+.. |.+ ..+..+|-+..+|..++..|+.-+++.+..+++.....++ ..++|.+..++..
T Consensus 63 cVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 566777666654 333 3456788899999999999999999999988887764432 2377888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH-HHHHHHHHhhcCCCHHHHHHHH
Q 000143 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAAL 1865 (2058)
Q Consensus 1787 ~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~-~vL~~L~~~~~D~~~~VR~aA~ 1865 (2058)
++..|..++++.+..+..-- . .+...+..+..| -.+..+.. ..+..+|.-.+
T Consensus 140 eddeVAkAAiesikrialfp---------------------a---aleaiFeSellDdlhlrnlaa---kcndiaRvRVl 192 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFP---------------------A---ALEAIFESELLDDLHLRNLAA---KCNDIARVRVL 192 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcH---------------------H---HHHHhcccccCChHHHhHHHh---hhhhHHHHHHH
Confidence 88888888888887763100 0 000011111110 01111111 11223444444
Q ss_pred HHHHHHHhhChhhHHHh-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCc-chhh--chHHHHhhhcC--CCChh
Q 000143 1866 HVWKTIVANTPKTLKEI-MPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGE-RVLP--SIIPILSRGLK--DPSAS 1938 (2058)
Q Consensus 1866 ~~l~~lv~~~~~~l~~~-l~~L~~~l~~~L~~-~~~~~R~~A~~~Lg~L~~~lg~-~~l~--~llp~L~~~l~--d~~~~ 1938 (2058)
..+-.+.+..|....+. -..++..+...+.. .+.-++..+++...+++..-.. .+++ .++..+-+.+. |.+|-
T Consensus 193 eLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPf 272 (524)
T KOG4413|consen 193 ELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPF 272 (524)
T ss_pred HHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcH
Confidence 55545544444333222 12455556555655 6677888888888888876543 3433 34444444332 44555
Q ss_pred HHHHHHHHHHHHHHh-----hChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1939 RRQGVCIGLSEVMAS-----AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~-----~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.+..+..+++.++.. .++++.-.-+...+....+.+...|++..++|..++|.+..+.
T Consensus 273 ekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 273 EKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 555444555544432 2333333334555566666777889999999999999876443
No 131
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=3.9 Score=57.88 Aligned_cols=360 Identities=15% Similarity=0.121 Sum_probs=181.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh--hhCCCC
Q 000143 1138 ALSHSNYNVRLAAAEALATALDE-YPD--SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--VLRTKD 1212 (2058)
Q Consensus 1138 ~l~~~~~~vR~aaa~aLa~~~~~-~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~--~~~~~~ 1212 (2058)
.|.|+|.+||--.+-|++.+..- .|+ .-...+..++..+........+..++...-|-.....+..... .+.-.+
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 67899999999999999999864 344 2223555555544332222122222333333333334433321 122222
Q ss_pred ----hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHH-HHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 000143 1213 ----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI-FENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2058)
Q Consensus 1213 ----~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~-l~~~L~~~~~~~e~~~~vR~~av~~Lg~L 1287 (2058)
+..+++.+. ..+.++.+.--..+++....++.....- -.+++.+ |.+++.. ..+. ...-+..+-.++-.+
T Consensus 138 ~~e~~~~~f~~f~-d~~~~~~~~~v~~~~~i~~~li~e~d~v-~~e~L~~ll~~lv~~-~~~~--~~~a~~la~~li~~~ 212 (1266)
T KOG1525|consen 138 CQELVHELFRTFF-DLARKGHPKKVFNMLDIAIMLITEEDTV-QSELLDVLLENLVKP-GRDT--IKEADKLASDLIERC 212 (1266)
T ss_pred hHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhccC-CCCc--cHHHHHHHHHHHHHh
Confidence 233444332 2333444433333777777776654322 2345554 5555543 2221 113344555666666
Q ss_pred HhHhccCCcchHHHHHHHHhhhCC---CCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1288 AKHLAKDDPKVHAVVDKLLDVLNT---PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364 (2058)
Q Consensus 1288 a~~l~~~~p~i~~iv~~Ll~~L~~---~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~ 1364 (2058)
+.++.+. +. ..+...+.- .-..++...-+.+..+.+...+.+-..+|.+...|..+ +..+|..|...++.
T Consensus 213 a~~~~~~---i~---~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se-~~~~Rl~a~~lvg~ 285 (1266)
T KOG1525|consen 213 ADNLEDT---IA---NFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE-QEEVRLKAVKLVGR 285 (1266)
T ss_pred hhhhchh---HH---HHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 6555422 22 222222211 11112222233333443333334456677777777655 57899999999999
Q ss_pred HHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHH-HHHHHcCCCCHHHHHHHHH
Q 000143 1365 VVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP-LLLVAFSDQVVAVREAAEC 1442 (2058)
Q Consensus 1365 l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp-~Ll~~l~D~~~~VR~aA~~ 1442 (2058)
+....+..... ..++.......+.|. +..+|.+++.....+.-. .|....-.. .+.-...|.++.+|....-
T Consensus 286 ~~~~~~~~l~~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~D~~~rir~~v 359 (1266)
T KOG1525|consen 286 MFSDKDSQLSETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLN-----NPSIAKASTILLALRERDLDEDVRVRTQV 359 (1266)
T ss_pred HHhcchhhhcccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhc-----CchhhhHHHHHHHHHhhcCChhhhheeeE
Confidence 88755433222 123444444455555 788998887755444332 222222121 2222334555555543221
Q ss_pred HHHHH--HHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh-------ChhhHhhhhhhHHHHHHHHhcCCCH
Q 000143 1443 AARAM--MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVLTDTHP 1513 (2058)
Q Consensus 1443 al~~l--~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-------~p~~l~~~L~~Iip~L~~~L~D~~~ 1513 (2058)
.+..+ +... -..+..++..+.+++.|+.|++|..|+.-|..+... ..+...+.+..|-..++.++.+.+-
T Consensus 360 ~i~~~~v~~~~-l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~ 438 (1266)
T KOG1525|consen 360 VIVACDVMKFK-LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDL 438 (1266)
T ss_pred EEEEeehhHhh-hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccc
Confidence 11111 1100 011222677778889999999999999999988863 1233444445555566666665544
Q ss_pred HHH
Q 000143 1514 KVQ 1516 (2058)
Q Consensus 1514 ~VR 1516 (2058)
.-|
T Consensus 439 ~~r 441 (1266)
T KOG1525|consen 439 DDR 441 (1266)
T ss_pred cHH
Confidence 444
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.041 Score=62.31 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=132.0
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000143 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2058)
Q Consensus 1464 l~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D--~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2058)
.+.+.+++---+....-.||.+.. ..-+|.+...+.| ..|.||..|..||++++. ...++.
T Consensus 42 ~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------~~~~~~ 104 (289)
T KOG0567|consen 42 TKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------PESLEI 104 (289)
T ss_pred HHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------hhhHHH
Confidence 334444444444555556665542 3567788888876 469999999999999983 245666
Q ss_pred HHhccCCCChhHHH-HHHHHHhccccccCCh-----------hhHh-h--HHHHHHHhhcCCCH--HHHHHHHHHHHHHH
Q 000143 1542 LLMGLTDPNDHTKY-SLDILLQTTFVNTVDA-----------PSLA-L--LVPIVHRGLRERSA--ETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~-----------~~l~-~--llp~L~~~L~d~s~--~vr~~A~~~l~~L~ 1604 (2058)
+-+..+||...+++ |.-++.+..+.+..+. |... . -++-+...+.|.+. --|+.|.-.+-+++
T Consensus 105 l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g 184 (289)
T KOG0567|consen 105 LTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG 184 (289)
T ss_pred HHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC
Confidence 66777899888775 4334433222221111 1100 1 12223333333211 11222221222111
Q ss_pred hhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC-CChHHHhhHHHHHH
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLS 1683 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d-~~~~~R~~aa~~L~ 1683 (2058)
. +.-+..+...+.+++.-.|..++-+||.+-. +.-+|.|.+.|... +.+-+|..++.+||
T Consensus 185 ~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 185 T------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred c------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 0 1235556666777777888888888887753 45678887777643 34568999999998
Q ss_pred HHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1684 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1684 ~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
.++. ++.++.|.+.+.|+.+-||+.+..+|.-.--.-|..
T Consensus 246 aIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 246 AIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred hhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7653 356667778888999999999887775443333333
No 133
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.96 E-value=0.057 Score=63.40 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=124.2
Q ss_pred HHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hH
Q 000143 1459 VLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2058)
Q Consensus 1459 llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i 1535 (2058)
-+..++..|+ ..++..+..++.++|..+.....+ +... -..++.+...++++++.||..|++++..++....+. .+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3455666666 456778888888888876543222 2222 267788899999999999999999999998776653 34
Q ss_pred HhHHHHHHhc-cCCC-ChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1536 ASLVPTLLMG-LTDP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1536 ~~lvp~Ll~~-l~d~-~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
+..++.+++. ..++ +..++ .++..|...+..... ...+...+|.+.+.+...+..+|.++..++.+|+. .+..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~~ 167 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPDM 167 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHHH
Confidence 5556665553 3333 33443 677777763222211 23345567777888888888999999999999876 2222
Q ss_pred hhhhH-hhhhHHHHHhhCCC-CHHHHHHHHHHHHHHHHhhccc
Q 000143 1613 MIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1613 l~pyl-~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
....+ .+.++.+..+++.. ..++...+...+..+.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 22222 25667777777754 5566667777777777766554
No 134
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.94 E-value=0.03 Score=69.61 Aligned_cols=231 Identities=18% Similarity=0.233 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHh--c---cCCcchHHHHH
Q 000143 1232 VRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL--A---KDDPKVHAVVD 1303 (2058)
Q Consensus 1232 VR~~al~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l--~---~~~p~i~~iv~ 1303 (2058)
|+..+++........++. .+++.++..+++.|.. .+....+|.+-..++.+|..+++.. . ...|.++.++.
T Consensus 112 vK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 112 VKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 333444444444444332 2345566666777766 3334455677778888888877521 1 11233344433
Q ss_pred HH-HhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHH
Q 000143 1304 KL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2058)
Q Consensus 1304 ~L-l~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~ 1382 (2058)
.+ +..+.=..+++ +...++-.++++.=++ .++....|++|...+..+.+..+..... .++.+
T Consensus 191 ~VI~Pnl~~~e~D~------------ElfEddP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~ 253 (370)
T PF08506_consen 191 KVIFPNLCLREEDE------------ELFEDDPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQY 253 (370)
T ss_dssp HTHHHHHS--HHHH------------HHHHHSHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HhccCccCCCHHHH------------HHHccCHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHH
Confidence 22 11221111111 0112233466665333 3344566778888888888776543322 23344
Q ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHHHHHhc-------c-----cchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHH
Q 000143 1383 LREGLA-----DRNSAKRREGALLAFECLCEKLG-------R-----LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1383 L~~~l~-----~~~~~~~R~~al~al~~L~~~lg-------~-----~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al 1444 (2058)
+.+.++ ...+|+.+++|+..++.++.... . .+..++. .++|-+. .-.+..|.+|..|++.+
T Consensus 254 i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~ 332 (370)
T PF08506_consen 254 IQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFL 332 (370)
T ss_dssp HHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHH
Confidence 444443 34589999999999999986431 1 2344444 4566665 44456788999999999
Q ss_pred HHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1445 ~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
..+-..++++.+..++|.+...|.+++.-++.-|+.+
T Consensus 333 ~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 333 YTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 9998888888889999999999999988887666544
No 135
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.033 Score=68.10 Aligned_cols=283 Identities=17% Similarity=0.209 Sum_probs=163.6
Q ss_pred HHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1196 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
++..+++-+-..++.++.+.+...+. --+|....+-.-.+-.++-++..+. . -.++...+.+.+.. + .. .
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~MgS-a-n~eiye~lKe~l~n-D---~a--~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMGS-A-NREIYEKLKELLKN-D---RA--L 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhccc-c-cHHHHHHHHHHHhc-c---hh--h
Confidence 55667777655676666666554431 1223322232222223333333221 1 12444445444432 1 11 2
Q ss_pred HHHHHHHHHHHHHhHhccCCcchHHHHHHHHhh-hCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHH
Q 000143 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDV-LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~-L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~v 1354 (2058)
.-++++..+|-+. +.... .+.+..|..- -.+..+.+.+...-.+.-++.. -++....+++.|..+.++-.
T Consensus 462 ~geAa~~gMGl~m--Lgt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~yg----rqe~add~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLM--LGTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYG----RQEMADDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceee--ecCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhh----hHHHHHHHHHHHhcCchHHh
Confidence 3355555555543 11111 2222333222 1233344444433322222221 13455567777777888889
Q ss_pred HHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC-CC
Q 000143 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QV 1433 (2058)
Q Consensus 1355 R~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D-~~ 1433 (2058)
|.+.+.+++....+-|.. .++..+....-++.|..+|.+|+.|+|.+|-.-. ..++..++.+.+ .+
T Consensus 533 Ry~G~fs~alAy~GTgn~-----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN 599 (926)
T COG5116 533 RYNGVFSLALAYVGTGNL-----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHN 599 (926)
T ss_pred hhccHHHHHHHHhcCCcc-----hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccc
Confidence 998888887766665532 4566666664445588999999999988763211 244455555555 47
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCH
Q 000143 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~ 1513 (2058)
+.||....-+++......+. +..+..+-..+.|.+-.+|++|+-+++.+.-.+.+++.+....|...+..+..|.|.
T Consensus 600 ~hVR~g~AvaLGiacag~G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGD---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hhhhhhhHHHhhhhhcCCcc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 89999888888876544332 222333333456788899999999999999989899999999999999999988764
No 136
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.036 Score=67.84 Aligned_cols=268 Identities=16% Similarity=0.203 Sum_probs=155.0
Q ss_pred hhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhH
Q 000143 1246 KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325 (2058)
Q Consensus 1246 ~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~ 1325 (2058)
.+|.+..+.|.. ..+.. .++.-+.+...++-.+|-++ +.+.+ .++.+.+-+.+...+...-+++.-..+
T Consensus 403 gfgr~~TeYL~e---~~~~t---eDe~~~~l~yG~~LGiGL~~--MgSan---~eiye~lKe~l~nD~a~~geAa~~gMG 471 (926)
T COG5116 403 GFGREDTEYLLE---YFLDT---EDELTPELAYGVCLGIGLIN--MGSAN---REIYEKLKELLKNDRALLGEAAVYGMG 471 (926)
T ss_pred CcCcccHHHHHH---HhCcc---cccccHHHHHHHHhhhcchh--ccccc---HHHHHHHHHHHhcchhhhhhhhhhccc
Confidence 456555555552 22221 12222345555554444433 33333 456666666665443222222221111
Q ss_pred hhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000143 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405 (2058)
Q Consensus 1326 ~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~ 1405 (2058)
-+ .++....+.+..+++--.+.+...+.++-..+++.+.-+. .. ..-.++.+.+.++ ++..|-+.+++++.
T Consensus 472 l~--mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe----~add~I~ell~d~-ds~lRy~G~fs~al 542 (926)
T COG5116 472 LL--MLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QE----MADDYINELLYDK-DSILRYNGVFSLAL 542 (926)
T ss_pred ee--eecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HH----HHHHHHHHHhcCc-hHHhhhccHHHHHH
Confidence 11 1233345677777765444444566667666666665432 11 1223445555555 88899888877654
Q ss_pred HHHHhcccchhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHH
Q 000143 1406 LCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLG 1483 (2058)
Q Consensus 1406 L~~~lg~~~~p~l~~llp~Ll~~-l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg 1483 (2058)
---+.|. . .++..++.. .+|.++.||++|.-+++.+.-.- ...++..++.|. +.+..+|.+..-+||
T Consensus 543 Ay~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLG 611 (926)
T COG5116 543 AYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALG 611 (926)
T ss_pred HHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhh
Confidence 4433332 1 234444443 78999999999999998764221 234555556665 458999999999999
Q ss_pred HHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCC
Q 000143 1484 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1484 ~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~ 1550 (2058)
-.+.+.+.+.. +..|-.+..|++.-||++|+-+++-+-.... +|.+..|...+.+.+.|..
T Consensus 612 iacag~G~~~a------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 612 IACAGTGDKVA------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hhhcCCccHHH------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 88877665432 3344556789999999999999998876544 3455666666666665543
No 137
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.023 Score=65.70 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=124.7
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---h
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---E 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~ 1534 (2058)
..+...+..|.+++|..+..++..+..++..-++.+...+..++..+.+-++.....|-++||.+++.+.+...+. .
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778899999999999999999988888899999999999999999999999999999999999887653 3
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.+.++-.|+..-.+.+..+| .|-.+|.. ++.. ..-..+++.|...++..++.+|..++.+..+....++-+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~---vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVA--MVNH---VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHH--HHhc---cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 34444444444444455565 23333332 1111 123457888888888888999999887665544433322223
Q ss_pred hhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.+|...+.+.+.+-+.|.-+..|+.+-..
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHH
Confidence 44555666666666667766666554333
No 138
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=5.4 Score=56.54 Aligned_cols=320 Identities=16% Similarity=0.167 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHhHhccCCcc----hHHHHHHHHhhh---CCC-CHH-HHH-HHHHhhHhhH---hhcccchHHHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAKDDPK----VHAVVDKLLDVL---NTP-SEA-VQR-AVSSCLSPLM---QSMQDEAPTLVSR 1341 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~p~----i~~iv~~Ll~~L---~~~-~~~-V~~-av~~~L~~l~---~~~~~~~~~~v~~ 1341 (2058)
.||--+.-|+..+-+-+.++.|| +.+|+..++..+ .|. ++. -|+ ...+.+.... -..-++..+++..
T Consensus 65 dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~ 144 (1266)
T KOG1525|consen 65 DVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHE 144 (1266)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHH
Confidence 47777777888887777776554 566666666544 333 221 121 1111111111 0112233444444
Q ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000143 1342 LLDQLM----KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2058)
Q Consensus 1342 Ll~~L~----~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~ 1417 (2058)
++..+. .+....+- -...+...+-.. .+.+ ...++..+...+-.. ....+.+|...-..+.+.++...+++
T Consensus 145 ~f~~f~d~~~~~~~~~v~--~~~~i~~~li~e-~d~v-~~e~L~~ll~~lv~~-~~~~~~~a~~la~~li~~~a~~~~~~ 219 (1266)
T KOG1525|consen 145 LFRTFFDLARKGHPKKVF--NMLDIAIMLITE-EDTV-QSELLDVLLENLVKP-GRDTIKEADKLASDLIERCADNLEDT 219 (1266)
T ss_pred HHHHHHHHHhccccHHHH--HHHHHHHHHHHh-hccc-hHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHhhhhhchh
Confidence 444332 22211111 122222111111 1122 224555555444333 23334444444444555555556666
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+...+..-+..-...-..++..--+.+-.+. ...+..+-.++|.|...|..++-.+|..|+.++|.|...-..++....
T Consensus 220 i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~ 298 (1266)
T KOG1525|consen 220 IANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETY 298 (1266)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccc
Confidence 5554433332211111222222222232322 223344567899999999999999999999999999877666676777
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH---hHHHHHHhccCCCChhHHHHHHHHH-hccccccCChhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA---SLVPTLLMGLTDPNDHTKYSLDILL-QTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~---~lvp~Ll~~l~d~~~~vr~al~~L~-~~~f~~~~~~~~ 1573 (2058)
+.+....+..++|.++.||.++.+...++--. +|.+. .+.-.+.....|++..+|. ..+. .+.+. ...-..
T Consensus 299 ~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~-~~~l~~ 373 (1266)
T KOG1525|consen 299 DDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVRVRT--QVVIVACDVM-KFKLVY 373 (1266)
T ss_pred hHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhhhee--eEEEEEeehh-Hhhhhh
Confidence 88999999999999999999999988887543 55442 2222333344455444431 0000 00000 000011
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
...++..+...+.|+-+.||..|..-+..+.+
T Consensus 374 ~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 374 IPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 12256666677889999999999888877766
No 139
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=3.4 Score=53.87 Aligned_cols=185 Identities=19% Similarity=0.222 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
..+.|+.+.+...++.-...|+.|+.||..+.+.+...... .-|+.+.+.++ |-.|+..-..++..+..+
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il------- 90 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLIL------- 90 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHH-------
Confidence 56788888888888877889999999999998865221111 11333344443 222343333332222111
Q ss_pred chhhHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVA-------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~-------VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
...|+.+. +-+...+....+..+ +..+..++..++..++.+|..+++++.++.
T Consensus 91 --------------~~~dd~~~v~dds~qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsall 150 (970)
T KOG0946|consen 91 --------------TSHDDSPEVMDDSTQSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALL 150 (970)
T ss_pred --------------HhcCcchhhcccchhhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHH
Confidence 11222222 222333333333221 356777888889999999999999999999
Q ss_pred hhChhhHhh---hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhccCC
Q 000143 1487 YCAPQQLSQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1487 ~~~p~~l~~---~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d 1548 (2058)
.+.|.++.. .+|.-+..++..|.|++..+|..++--|..+....++- .+..+...|+..+..
T Consensus 151 s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 151 SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 999877654 45777888999999999999999999998887753321 123444555555543
No 140
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.60 E-value=3.4 Score=51.86 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=132.6
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-h--hh---hHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-S--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l-~--~~---~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
.|...+..++..++.+-+.+. +-+....-+.+++... + ++ -+..++..++.++++++..+|.-+++.+..+.
T Consensus 42 ~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 42 EFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred hhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 456666667777776655432 2222333444444411 1 12 24777888899999999999999999999998
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCChhHHH-HHHHHHhcc
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTT 1564 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~vr~-al~~L~~~~ 1564 (2058)
.+..+.-......++..+.+.+-|..+.||..|..+|..+-+.-.|++- .+...+...+ .||+..+|. ++-.+..
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v-- 196 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV-- 196 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence 8766543334457777888888999999999999999999876666643 2233333333 588888873 4433321
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~-~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
+ ....|.+.....|-+...|+..- .++..|+..-. .++.+. +. .+.-.+.|.+..|+.++..++
T Consensus 197 -----d----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~--lsi~kr---i~-l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 197 -----D----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKS--LSIDKR---IL-LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred -----C----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh--ccccce---eh-hhhhcchhhhhhHHHHHHHHH
Confidence 1 11346666666676666665532 34444433211 122222 11 444557788888998888877
Q ss_pred HH
Q 000143 1644 GS 1645 (2058)
Q Consensus 1644 g~ 1645 (2058)
..
T Consensus 262 a~ 263 (885)
T COG5218 262 AS 263 (885)
T ss_pred HH
Confidence 65
No 141
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=4.1 Score=52.36 Aligned_cols=319 Identities=17% Similarity=0.154 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~--~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
....++..+.+.+...++.--.-|..+++.+...--.+.+..=+| +.|.+. ..-+|+.|+.++-.+....|+...
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 344566666666767777777778888777754433333322233 333332 234566666666667766776554
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
+ ......+..+|+|.|-.|-.++..-+..++....+ ++..-+|.-+..+.. .++..-..+...+|.. +-.|=+
T Consensus 185 ~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~avs~L~r---iv~~~~t~~qdYTyy~-vP~PWL 257 (938)
T KOG1077|consen 185 P--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPLAVSRLSR---IVVVVGTSLQDYTYYF-VPAPWL 257 (938)
T ss_pred h--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHHHHHHHHH---HHhhcccchhhceeec-CCChHH
Confidence 4 25677788999999999999998888888875433 333333332222110 0000000000000100 011111
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hH----hhhhHHHHHh-hCCCCHHHHHHHHHHHHHH
Q 000143 1575 -ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YI----GLLLPEVKKV-LVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1575 -~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl----~~ll~~L~~~-l~d~~~~vR~~a~~aLg~l 1646 (2058)
-.++..|...=..+++.+|....+++..+.....++..... +. ..+.+.+.-+ .-|+.++.-..+..+||
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg-- 335 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLG-- 335 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--
Confidence 11222222222335566777666666665443222111000 00 0011111111 11444444333333333
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh-chhHHHHhhHHHHHhhc-cCChhHHHHHHHHHHHhH
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~-g~~~l~~llp~Ll~~l~-~~~~~vR~~al~~l~~la 1724 (2058)
+.+. +.+...|--+...+..++..- ..+.+..-...++..++ +.+..+|+.++.++-.+|
T Consensus 336 -----------------~fls-~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 336 -----------------QFLS-HRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred -----------------HHhh-cccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 3333 344556777777776665441 12234444666777777 678999999999998887
Q ss_pred HHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1725 ~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
..-. ...++.-+++.|...+..+|+...--...+.+.|+.+
T Consensus 398 D~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 398 DVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred chhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 6433 3457777778787778889988766666677777654
No 142
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=5.6 Score=53.36 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=67.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHh---hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----hhhch
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSI 1924 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~---~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l~~l 1924 (2058)
.+.+.+..+|-.+++++..... ..+..+-+.+.+.++.++.++.+.++-+-..|..|+..++...|+- +..++
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dv 890 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDV 890 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3567777888888888865543 3456677888899999999999999999999999999999998864 57788
Q ss_pred HHHHhhhcCC
Q 000143 1925 IPILSRGLKD 1934 (2058)
Q Consensus 1925 lp~L~~~l~d 1934 (2058)
+|.+...+.+
T Consensus 891 lP~l~~~~~~ 900 (1014)
T KOG4524|consen 891 LPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHH
Confidence 9988866643
No 143
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.51 E-value=0.08 Score=62.23 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~-g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--~~ 1413 (2058)
+.++.++..|...+++.++..+..+++..+... .-+.+...+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 445666776766677888887777777654311 111222346677788888876 89999999998887765432 23
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh--
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-- 1490 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p-- 1490 (2058)
++.|+.+++..+... .-+..++.++.++|..+.-.... +.+...+|.++..+...+-.+|..++..|..++....
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~ 168 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMT 168 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHH
Confidence 556666666655432 23667888888888887432211 2346678889999998899999999999999986522
Q ss_pred hhHhhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCch
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
..+-. .+..+.++.+++.. +..+-..++.-+..+.+.++.+
T Consensus 169 ~~Ll~--~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLS--AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHh--ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 14455666666654 5777778888888887776643
No 144
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=5.7 Score=52.62 Aligned_cols=188 Identities=15% Similarity=0.235 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC-----hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh-
Q 000143 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL- 1508 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~-----~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L- 1508 (2058)
..|..-.+++...-..++..-.+.+...+-+.+.+.+ |..-.+++-.+..+++..+...... +|.+++..
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~a 514 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSA 514 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhcc
Confidence 3455555555555555554434555555555555443 7777778888888887766555544 44444443
Q ss_pred ----cCCCHHHHHHHHHHHHHHHhhcCc-h-hHHhHHHHHHhccCCCChhHH--HHHHHHHhccccccCChhhHhhHHHH
Q 000143 1509 ----TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVDAPSLALLVPI 1580 (2058)
Q Consensus 1509 ----~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr--~al~~L~~~~f~~~~~~~~l~~llp~ 1580 (2058)
.-.++..-..+...++.++..+++ | ++...+|.|++.+..+....+ ..+..+..+ ..+.-.|+...++..
T Consensus 515 sik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~ 592 (982)
T KOG2022|consen 515 SIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCET--CPESLDPYADQFSAV 592 (982)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHh--hhhhCchHHHHHHHH
Confidence 234788888899999999998874 4 678899999999987765543 234444431 111122344444444
Q ss_pred HHHhhcC--CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC
Q 000143 1581 VHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2058)
Q Consensus 1581 L~~~L~d--~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~ 1629 (2058)
....+.. -...+|......+|.+.+.. .++....|+..++..+..-++
T Consensus 593 ~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 593 CYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHH
Confidence 4444432 23456777888899888765 367778888888877766544
No 145
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.36 E-value=0.045 Score=70.00 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=141.3
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+...++|.+.+.++..+..+|..-.+-+......+.+ ..+.++++|.+...+.|.++.+|+...+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4456899999999998889998877777777665543 235567899999999999999999999999999999998
Q ss_pred cCc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH-HHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD-IIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1653 ~~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~-Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
..+ .+++..+ ..++.|+....|.....+++++...+.......++.. ....+.|+-+.-|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~-ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYL-ARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHH-HhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 844 3566655 4444577777899999999888766544433334332 33346677777788877777665555443
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~ 1768 (2058)
...-.+++|.+....-|++..||+.+..++..+....
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2355678899999999999999999999988776543
No 146
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.33 E-value=0.047 Score=69.87 Aligned_cols=221 Identities=23% Similarity=0.224 Sum_probs=155.8
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc----ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccc
Q 000143 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM----QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2058)
Q Consensus 1299 ~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~----~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l 1374 (2058)
..+++.|+..+.-.+ ++...+.++.... .+.++..+..++-.|+...|-.+|..-.+.+...+..+....+
T Consensus 292 ~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~ 366 (690)
T KOG1243|consen 292 SKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL 366 (690)
T ss_pred HHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh
Confidence 345566666654332 3334444544332 2223444444555566777788998888888888887766655
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
. ..|.|.+...+.|. |+..|+..+.++..++..++.. ..=.+++..+-..-.|++..+|-...-|++.+...+.+.
T Consensus 367 ~-d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~ 442 (690)
T KOG1243|consen 367 N-DQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS 442 (690)
T ss_pred c-chhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh
Confidence 3 47899999999887 8999999999999999988853 233467777777777999999999999999998877665
Q ss_pred hHHhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1455 GVKLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1455 ~v~~llp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
..+.+++.-+. .+.|+-...|.+++..+.......+. ...-..|+|.+....-|+++.||..|..++..+-..+
T Consensus 443 ~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 443 VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 55555554443 47788888898888777665544332 2223478888888888999999999999988876544
No 147
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.25 E-value=5.8 Score=50.73 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh
Q 000143 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L 1974 (2058)
-++++.+.+|.-||..+.- +..++..+=+|.+...+. .++|.+|.+++.++|++.-+... +.+..-..+...+
T Consensus 907 ~sd~~lq~aA~l~L~klMC-lS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-----~~de~t~yLyrrL 980 (1128)
T COG5098 907 FSDEELQVAAYLSLYKLMC-LSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-----TADEHTHYLYRRL 980 (1128)
T ss_pred cCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh-----hhHHHHHHHHHHh
Confidence 3688899999999988763 344455666777777775 78899999999999998866532 3456667788899
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc
Q 000143 1975 CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2058)
Q Consensus 1975 ~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2058)
.|.+.+||..+.-++.-+.- .|.-.+..-+|.+...|.|++
T Consensus 981 ~De~~~V~rtclmti~fLil-agq~KVKGqlg~ma~~L~ded 1021 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLIL-AGQLKVKGQLGKMALLLTDED 1021 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHH-ccceeeccchhhhHhhccCCc
Confidence 99999999999999888864 344445567888888898876
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.23 E-value=0.0071 Score=45.97 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
|+|.+.+.++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 149
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.11 Score=65.64 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=113.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc----hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh-
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG- 1649 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~----l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~- 1649 (2058)
.+.-|++-++++-++..||..|+..+-++... .+|+. ....++.-...+..++.|+.|.||..|...+..+...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999998887764 34432 3334444455678889999999999998887766643
Q ss_pred ---hcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc-hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHH
Q 000143 1650 ---MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2058)
Q Consensus 1650 ---lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g-~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~ 1725 (2058)
+++....+++..+.+.+..|+..++|.....+|..++..-- ...++.++|.+-..+.|....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33334557777788888888888899999999988865322 12568888988888889999999999888766543
No 150
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.17 E-value=0.088 Score=64.28 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--------
Q 000143 1892 SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-------- 1963 (2058)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-------- 1963 (2058)
-.+.+++..+|..|.+|+|-.+- ++.+...+.++.+...++..+..+|..++.++.+++...|.+.+....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 45788999999999999998775 344555666777777776568889999999999999888776554433
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
..++..+.+.+.+.++++|..|+++|..+.-+
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 36888899999989999999999999998743
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.13 E-value=0.61 Score=55.31 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHhHhccCC---cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc---ccchHHHHHHHHHHHhc
Q 000143 1275 LVREGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLMK 1348 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~---p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~---~~~~~~~v~~Ll~~L~~ 1348 (2058)
.+|..++.+|+.+...+++.. ..++.++.-+...|.|. ..+.. +..++..+++.. ++....++..+++....
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~ 91 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPESAVKILRSLFQNVDV 91 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhhHHHHHHHHHHhCCh
Confidence 789999999999998887542 23555666666667543 23333 366666666332 22234445555543322
Q ss_pred C-CCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 000143 1349 S-DKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1349 ~-~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll 1426 (2058)
+ -....|....+.+..++.......-. ..+++..+.+.+..++||+.=.-+...+..+..... +.++..++...+.
T Consensus 92 q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~ 169 (262)
T PF14500_consen 92 QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFS 169 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhh
Confidence 1 13567888888888887754321100 125677778888999999877666666666666655 3666777766665
Q ss_pred HHc--------CCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-hhHhhh
Q 000143 1427 VAF--------SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQC 1496 (2058)
Q Consensus 1427 ~~l--------~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p-~~l~~~ 1496 (2058)
..+ +|+...-|+.-..++..++... ..+ +..+|.+++.|.+....+|..+++.|...+...+ +.+.+|
T Consensus 170 cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 170 CYFPITFRPPPNDPYGITREDLKRALRNCLSST--PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred heeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 543 2433333444444555544322 222 6789999999999999999999999998876654 457788
Q ss_pred hhhHHHHHH
Q 000143 1497 LPKIVPKLT 1505 (2058)
Q Consensus 1497 L~~Iip~L~ 1505 (2058)
+..|...+.
T Consensus 248 ~~~iw~~lk 256 (262)
T PF14500_consen 248 WSTIWNALK 256 (262)
T ss_pred HHHHHHHHH
Confidence 777777654
No 152
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=7.2 Score=50.64 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhhCccccch-h--------chHHHHHH-HHhCCCCHHH-----HHHHHHHHHHHHHHhc------cc
Q 000143 1355 RRGAAFGLAGVVKGFGISSLKK-Y--------GIAATLRE-GLADRNSAKR-----REGALLAFECLCEKLG------RL 1413 (2058)
Q Consensus 1355 R~~Aa~~L~~l~~~~g~~~l~~-~--------~il~~L~~-~l~~~~~~~~-----R~~al~al~~L~~~lg------~~ 1413 (2058)
.+-|++.|-++.+..+...... + .++|.+.+ .++.-..|.. -...+..+..+.+.+. +.
T Consensus 259 kKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l 338 (970)
T COG5656 259 KKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRL 338 (970)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhh
Confidence 4557788888887766433221 1 12333222 1211111211 2334555666555443 35
Q ss_pred chhhHHHHHHHH-HHHc-----------CCCCHHHHH-------------HHHHHHHHHHHhhhhhhHHhHHHHHHHhcc
Q 000143 1414 FEPYVIQMLPLL-LVAF-----------SDQVVAVRE-------------AAECAARAMMSQLSAQGVKLVLPSLLKGLE 1468 (2058)
Q Consensus 1414 ~~p~l~~llp~L-l~~l-----------~D~~~~VR~-------------aA~~al~~l~~~l~~~~v~~llp~Ll~~L~ 1468 (2058)
++|++.-++... +.++ .|++..+|+ +|..++-.+..+-+.+.+..+++.+...+.
T Consensus 339 ~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~ 418 (970)
T COG5656 339 MEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILG 418 (970)
T ss_pred hccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHh
Confidence 678776444322 1221 244555554 345555555555555667888888888773
Q ss_pred -C-------CChHHHHHHHHHHHHHHhh--ChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1469 -D-------KAWRTKQSSVQLLGAMAYC--APQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1469 -~-------~~~~~R~~a~~~Lg~la~~--~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
. ++.+...+|+..++++... -+......+ .-|++.++..++++..-.|..||..+..+.+.+.++
T Consensus 419 qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~ 494 (970)
T COG5656 419 QSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN 494 (970)
T ss_pred cccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc
Confidence 1 3467778899999888762 122222222 246777888889998999999999999997766654
No 153
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.07 E-value=0.26 Score=67.18 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=100.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---- 1454 (2058)
-+.++.+.+.+.+-. ..+ +...+..+.......-..++..+.+.+.......++.++.+|+-+++.++...-..
T Consensus 396 av~~i~~~I~~~~~~-~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT-DDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S--HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCC-HHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 345556666554221 112 22334444433322223344444443332222356789999999998887654332
Q ss_pred ---------hHHhHHHHHHHhc----cCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCC---CHHHHHH
Q 000143 1455 ---------GVKLVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2058)
Q Consensus 1455 ---------~v~~llp~Ll~~L----~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~---~~~VR~a 1518 (2058)
..+.+++.+...+ ...+...+..++.+||++.. +.+++.+...+.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1234455554444 45567788899999998853 46677777777665 6899999
Q ss_pred HHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh--hHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~--~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
|++||.+++....+ .+.+.++..+.|+.+ .+| .|+..+... .|+...+..+....-.+++..|+..
T Consensus 544 Ai~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 544 AIQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhCchHHHHHH
Confidence 99999988665433 333444444444433 467 566665431 2444444444333345566665543
No 154
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.05 E-value=0.0096 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1966 ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
++|.+.+.++|++++||++|+.+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999864
No 155
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.04 E-value=17 Score=54.09 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHh-HhccCC---cchH-HHHHHHHhhhC-CCCHHHHHHHHHhhHhhHhhcccchH---HHHHHHHHH
Q 000143 1275 LVREGVVIFTGALAK-HLAKDD---PKVH-AVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSMQDEAP---TLVSRLLDQ 1345 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~-~l~~~~---p~i~-~iv~~Ll~~L~-~~~~~V~~av~~~L~~l~~~~~~~~~---~~v~~Ll~~ 1345 (2058)
.++.-|+..|..++- .++..+ .+++ .++..+...+. ..+.+|+..+..|+..++....+.+. ..|-.++..
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~ 1231 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTT 1231 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 477778888888875 333322 1222 45555544443 45678999999999988876543332 223334443
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCc-------cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-----c-
Q 000143 1346 LMKSDKYGERRGAAFGLAGVVKGFGI-------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-----R- 1412 (2058)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~l~~~~g~-------~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-----~- 1412 (2058)
...++....-+.|...+..++...-. ..+ .+++..+.+...+..+.+.--.|+..|..++..+- .
T Consensus 1232 aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1232 AAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 33444455555666667666653211 111 14555555555444333333333333333322210 0
Q ss_pred ---------------------------cch---hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----h---
Q 000143 1413 ---------------------------LFE---PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G--- 1455 (2058)
Q Consensus 1413 ---------------------------~~~---p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~--- 1455 (2058)
.-+ .+.-.++-.+.....|+.+.||..|.+.+-.++...+.. .
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 000 122233344445567999999999999888877665542 2
Q ss_pred -HHhHHHHHHHhccC------------------------CChH--HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1456 -VKLVLPSLLKGLED------------------------KAWR--TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1456 -v~~llp~Ll~~L~~------------------------~~~~--~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
+..++.+++..+.. ..|- +-..|+..+..+....-+.+...|+.++..|..+.
T Consensus 1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076 1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566666655421 1252 23334444444444444556778888888888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcC----chhHHhHHHHHHhcc
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGL 1546 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~----~~~i~~lvp~Ll~~l 1546 (2058)
..++..+...++.||.++....+ +.++..++..+.+.+
T Consensus 1470 ~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1470 KRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 88899999999999999987654 345566666655543
No 156
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.99 E-value=1 Score=58.09 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
+..+++.|++.|..+... |....+..+..++.++.|.+..||..|++.|..+++.- +++.+.+...|.+.|.+
T Consensus 35 ~~k~K~Laaq~I~kffk~------FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH------FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQT 107 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHhh------ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhc
Confidence 568899999999887653 34456678999999999999999999999999999753 45678888888898886
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
|+.. .+..+-.+|..+...-....+..++..+... .+.+..+|+.++..+..
T Consensus 108 dd~~-E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 108 DDPV-ELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLRE 159 (556)
T ss_dssp --HH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHH
Confidence 6544 5666667776666543333333443333321 24577899988877643
No 157
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.96 E-value=4.6 Score=50.95 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc--ccc-hhhHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhhhhhH-----HhHHH
Q 000143 1392 SAKRREGALLAFECLCEKLG--RLF-EPYVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQGV-----KLVLP 1461 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg--~~~-~p~l~~llp~Ll~~l~D~~--~~VR~aA~~al~~l~~~l~~~~v-----~~llp 1461 (2058)
+.+.-..|+.+++.+..... ..+ ..+..-++...+..+.+++ ..+......++.. .+++++.+ ..++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~- 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL- 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH-
Confidence 34555677777777653211 111 1222235566666665543 3455555555543 34444322 2222
Q ss_pred HHHHhccC--CChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhH
Q 000143 1462 SLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASL 1538 (2058)
Q Consensus 1462 ~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~l 1538 (2058)
..+..+.+ +.-.+-.+.+.++-.+....|..|..+....+|.++..+-+....+|..|...+..+...++. ..+...
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 22233332 233444556778888888899999999988999999988888999999987777666655542 222222
Q ss_pred HHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~-~~l~pyl 1617 (2058)
+...++....+. .....+.+.+...+.++. .-..|.++++.+..+++.+ -+--+|+
T Consensus 216 ~~~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~ 272 (372)
T PF12231_consen 216 VLEDLQRSLENG---------------------KLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHL 272 (372)
T ss_pred HHHHhccccccc---------------------cHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhH
Confidence 222222111111 122334555555555521 1234556777766666554 3445678
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
...+......++++++.+|..|..|+..++.....+
T Consensus 273 n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 273 NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888999999999999999999999855543
No 158
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.95 E-value=0.4 Score=61.37 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHH-HHHHhccCCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhcCC
Q 000143 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT 1511 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~~v~~llp-~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~D~ 1511 (2058)
-.-|-.|..+++.++..++......+.. .+..+|++..--.|..+...+..++......-. +..+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 3558899999999999998877766665 588999999999999999999999987653311 11345556666666643
Q ss_pred C-----------HHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccC---C--CCh-hHHHHHHHHHhccccccCChhhH
Q 000143 1512 H-----------PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT---D--PND-HTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1512 ~-----------~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~---d--~~~-~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
. ..+|..|..-+..|...-.=+ ..-+|.|-...+ + |+. .+..|-....
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~--~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~------------- 245 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDVGKVP--PSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVG------------- 245 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hhhccccccccccccccCCccCCHHHHHHHHH-------------
Confidence 2 334555555444444322100 111111111111 0 000 0001111000
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.....+.+.+... .|..+.+.+..- +.-+...+..+...-..-+-.|+..++.|+-.+. .+ ++.
T Consensus 246 -~~~~~l~~~l~~~---~k~~a~~~Le~~----------r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~-~l-P~K 309 (441)
T PF12054_consen 246 -EDFEKLKKSLSPS---QKLSALQALEDR----------RQRLQAAIEEAKEVQTSRDVRVLAAAASALVALG-GL-PKK 309 (441)
T ss_pred -HHHHHHHHhcCCc---ccchHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC-CCC
Confidence 0011111111110 000011111000 0001111111111111123345555555554442 23 345
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhc
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS 1706 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~ 1706 (2058)
++.+|..||+.++.+++...+..++.+++.++..+-.. --++++..|...++
T Consensus 310 LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC 364 (441)
T PF12054_consen 310 LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLC 364 (441)
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhc
Confidence 88899999999999999989999999999998877522 12566666666654
No 159
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.95 E-value=1.5 Score=54.69 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=124.3
Q ss_pred hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHh
Q 000143 1773 LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV 1852 (2058)
Q Consensus 1773 l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~ 1852 (2058)
++.++-.+.++...++..||..+++.+..+..++.. . .+..++..+..+...
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--------------------I--------De~l~N~L~ekl~~R 140 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--------------------I--------DEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--------------------H--------HHHHHHHHHHHHHHH
Confidence 445677788888889999999999988877533210 0 011223333444444
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhc
Q 000143 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2058)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l 1932 (2058)
.-|....||..|+.+++.+-.-... -+...-.++..++ -.||+.++|..|.--+. +-+...|.+.+..
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~n-een~~~n~l~~~v--qnDPS~EVRr~allni~---------vdnsT~p~IlERa 208 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELN-EENRIVNLLKDIV--QNDPSDEVRRLALLNIS---------VDNSTYPCILERA 208 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHH--hcCcHHHHHHHHHHHee---------eCCCcchhHHHHh
Confidence 5588889999999888776543221 1122222333232 36889999987754332 2345566666655
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhc
Q 000143 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL 2012 (2058)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L 2012 (2058)
.|-+...|..+- ..++...|.-.....-+.+. .+...+.|.+..||.+++.+++.-|.... |.=+-.|++.|
T Consensus 209 rDv~~anRr~vY---~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~~----d~~lveLle~l 280 (885)
T COG5218 209 RDVSGANRRMVY---ERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDAIASAWRIPE----DLRLVELLEFL 280 (885)
T ss_pred hhhhHHHHHHHH---HHHhhhhcchhhccccceeh-hhhhcchhhhhhHHHHHHHHHHHHhcccc----cccHHHHHHHH
Confidence 555544443322 23334443321111113333 56668899999999999999998876432 22222344444
Q ss_pred CCCcchHHHHHHHHHHHhhcCCcc
Q 000143 2013 EDDQTSDTALDGLKQILSVRTTAV 2036 (2058)
Q Consensus 2013 ~~~~~~~~al~aL~~i~~~~~~~~ 2036 (2058)
.-. .+..+..|++.+...++++.
T Consensus 281 DvS-r~sv~v~aik~~F~~R~D~l 303 (885)
T COG5218 281 DVS-RRSVLVAAIKGVFEKRPDVL 303 (885)
T ss_pred hhh-hHHHHHHHHHHHHhhccccc
Confidence 322 23477788888887776543
No 160
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.89 E-value=0.42 Score=59.59 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhCcc--------------
Q 000143 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSSSERRQVAGRALGELVRKLGER-------------- 1919 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~---L~~~~~~~R~~A~~~Lg~L~~~lg~~-------------- 1919 (2058)
....|.+|.+.+..++...+....+++...++.++.. -.+.++..+..|...++.++.+....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 3567899999999999887777666666555555432 23457888999999999998765311
Q ss_pred -h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000143 1920 -V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2058)
Q Consensus 1920 -~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~ 1989 (2058)
+ ...++|-|. .-.+..|-.|..+|..+...-..+++ +.+..++|.+...|.+++.-|+.-||.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 0 134556655 22244577888888877655555544 34578999999999999999999999875
No 161
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.88 E-value=1.9 Score=56.67 Aligned_cols=150 Identities=18% Similarity=0.111 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCC--CHHHHHHHHHHH---HHHHhhCh-hhHHHhHHHHHHHHHHHhc--------CCCHHHHHHHHHH
Q 000143 1843 NEVLAALYMVRSDV--SLSVRQAALHVW---KTIVANTP-KTLKEIMPVLMNTLISSLA--------SSSSERRQVAGRA 1908 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~--~~~VR~aA~~~l---~~lv~~~~-~~l~~~l~~L~~~l~~~L~--------~~~~~~R~~A~~~ 1908 (2058)
+.++.-++.++... ...+|..++..+ .....+.+ ..+..+-+.+...+...+. ..+...|..++++
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 34444555554444 556777777776 55554443 3334444444444444442 3467899999999
Q ss_pred HHHHHHHhCcchh--hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhh---HhHHhhHHHHHHHHhcCCCHHHHH
Q 000143 1909 LGELVRKLGERVL--PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL---LSFMDELIPTIRTALCDSILEVRE 1983 (2058)
Q Consensus 1909 Lg~L~~~lg~~~l--~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l---~~~~~~ll~~L~~~L~D~d~~VR~ 1983 (2058)
||.++++...-+. -.++..|.+.+.++.+++|..+-.||+.++.......- ..-...+.-.+.....+....+|.
T Consensus 398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~ 477 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY 477 (501)
T ss_pred HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence 9999998776543 35667777778888899999998899988877643211 000111112222333456677787
Q ss_pred HHHHHHHHH
Q 000143 1984 SAGLAFSTL 1992 (2058)
Q Consensus 1984 ~Aa~a~~~l 1992 (2058)
.|..-...+
T Consensus 478 ~avk~an~~ 486 (501)
T PF13001_consen 478 AAVKYANAC 486 (501)
T ss_pred HHHHHHHHh
Confidence 776554444
No 162
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.82 E-value=0.1 Score=57.19 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=75.2
Q ss_pred hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHhC
Q 000143 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL---FKSAG 1997 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l---~~~~g 1997 (2058)
+..++|.+.+++.+.+..-|.-|..++.+++...+.+.+.|.+++++..++.+|+..|++|..++..++-.+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467899999999887767788888899999988667788999999999999999999999999999999999 55556
Q ss_pred h---hhHHHHHHHHH
Q 000143 1998 M---QAIDEIVPTLL 2009 (2058)
Q Consensus 1998 ~---~~~~~ilp~Ll 2009 (2058)
. +++.+++|.+-
T Consensus 116 ~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 46666666654
No 163
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.81 E-value=2.5 Score=50.28 Aligned_cols=241 Identities=16% Similarity=0.136 Sum_probs=143.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc-----chHHHHHhhcccCCChHHHhhHHHHHHHHHHH--hchhHHHH
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEH 1696 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~-----~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~--~g~~~l~~ 1696 (2058)
|...+.++++.+|..|...|+.+...+..+.+. -++..+.+.+. |. . .-..+..++..+... ++.+....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~-~-~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DH-A-CVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cH-h-hHHHHHHHHHHHHhCcCCChhhHHH
Confidence 445567899999999999999999988866443 24455555553 22 1 223346666666522 23334455
Q ss_pred hhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1697 ILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL 1773 (2058)
Q Consensus 1697 llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~~~l 1773 (2058)
++..+.+...- -....|..++..+..+...........-..++..+++.+.. .+|.--..+.+.+..+...+.-
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 66666554432 25678888898888887776555444445566666666643 3454333344444444444331
Q ss_pred hchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhCh--hhHHHHHHHHHH
Q 000143 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR--DKRNEVLAALYM 1851 (2058)
Q Consensus 1774 ~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~--~~~~~vL~~L~~ 1851 (2058)
+. -.+-+-+.+++.-.++-+. ..+|+.+.+.++....+.+.+.. .+....++.+..
T Consensus 158 ----~~---------------~~e~lFd~~~cYFPI~F~p---p~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 158 ----SE---------------FAEDLFDVFSCYFPITFRP---PPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLE 215 (262)
T ss_pred ----ch---------------hHHHHHHHhhheeeeeeeC---CCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHH
Confidence 10 1111222223332222111 01233445566666666666642 333456777777
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHH
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLIS 1892 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~ 1892 (2058)
.+......++..++.++..++..++ ..+.+++..+++.+..
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 7878888899999999999998776 5688888888887653
No 164
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.80 E-value=1.3 Score=54.07 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=97.6
Q ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh-Hhh
Q 000143 1418 VIQMLPLLL-VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQ 1495 (2058)
Q Consensus 1418 l~~llp~Ll-~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-l~~ 1495 (2058)
+..++..++ ..+..+++.||+.|.+|++.++- +..+.-...++.+...+..++..+|..|++++..+.-..+.. +..
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 336665444 77888899999999999998863 333334667788888887678899999999999888553322 211
Q ss_pred --------hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCc-hh-HHhHHHHHHhccCCCChhHHHHHHHHHh
Q 000143 1496 --------CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKN-PE-IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2058)
Q Consensus 1496 --------~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~-~~-i~~lvp~Ll~~l~d~~~~vr~al~~L~~ 1562 (2058)
.-..++..+.+.+.+.++.+|..|++++..+.-. +.+ +. +..++-..+.--..++...|.++..+..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 2246788888899988999999999999987542 334 32 2333333333333334566777766543
No 165
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.76 E-value=3.7 Score=53.17 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred HHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1662 L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+++..+. +...+.-+++-+..+...+.. .-++.+..++..+.|.+..||..++..+-.+|..-++ |+..+...
T Consensus 28 il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDv 100 (556)
T PF05918_consen 28 ILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADV 100 (556)
T ss_dssp HHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHH
T ss_pred HHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHH
Confidence 3344442 344666777777776654432 3466788888999999999999999988888876554 78899999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
|.++|..+++..+..+-.++..++..-....+..++..+... ...+..+|..++..+..=+
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHH
Confidence 999999888888888888888877665554444444444421 1245678888888776544
No 166
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.68 E-value=0.096 Score=57.21 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred HhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCC---hHHHhhHHHHHHHHHHHh---
Q 000143 1617 IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAAL--- 1689 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~---~~~R~~aa~~L~~i~~~~--- 1689 (2058)
.|.+++.|...+.. .+|.+|..+.+.+|.++. +.+- -.+......+ ...-............+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~--------~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPY--------KHKSIQKSLDSKSSENSNDESTDISLPMMGISPS 78 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcH--------HHhcccccCCccccccccccchhhHHhhccCCCc
Confidence 35788888888764 469999999999999873 2221 1111110000 000000000111111111
Q ss_pred chh-HHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1690 GTV-YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1690 g~~-~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+ +..-.+..++..++|+ -...+..++.++.++....|....||+++++|.++..+....+..|+....-+..++.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 122 2344666777777776 3445557888888888889988899999999999999998777888888887777664
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.43 E-value=0.16 Score=55.69 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=89.3
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH----HHHhhHHHHHhhccCChhHHHHHHHHHHHh---HHH
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYL---PRS 1726 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~Ll~~l~~~~~~vR~~al~~l~~l---a~~ 1726 (2058)
.++.++|.+++.|...+.+ -|..|.+++.+++...|.+. +..+++.+...++..++.|...++.++..+ ...
T Consensus 35 dy~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3567999999999854444 78889999999998855553 456666777788888999999999999999 778
Q ss_pred hchhHHHhHHHHHHHHHHhcc------C-----CCHHHHHHHHHHHHHHHHHhccc
Q 000143 1727 LGVQFQNYLQQVLPAILDGLA------D-----ENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~------d-----~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
.|+.+.||+.+++|.+-.... | ...++++...++++.+-..-+++
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 899999999999999873221 1 23456777777777765555554
No 168
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=23 Score=51.13 Aligned_cols=224 Identities=19% Similarity=0.199 Sum_probs=151.5
Q ss_pred HHHhhhCCCCHHHHHHHHHhhHhhHhhcccc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc--hhch
Q 000143 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGI 1379 (2058)
Q Consensus 1304 ~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~--~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~--~~~i 1379 (2058)
.+...+..+++..+-.++++++.+....++. .....+..++++....|+-.|.+...+++.+-+..|.-.-. ...-
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 3445666777777777888888888776554 36788899999999888999999999999998876632211 1133
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CC--CHHHHHHHHHHHH------HHHHh
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ--VVAVREAAECAAR------AMMSQ 1450 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~--~~~VR~aA~~al~------~l~~~ 1450 (2058)
+..+....+|..++.++.-++.++..+.+..+..+..|+...+..+...+- ++ ...|+.+--+++. .+...
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alitt 1039 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITT 1039 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHh
Confidence 456667777887889999999999999998888788888877777766543 32 3344443333333 44443
Q ss_pred hhhh----h----HHhHHHH----HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHH
Q 000143 1451 LSAQ----G----VKLVLPS----LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518 (2058)
Q Consensus 1451 l~~~----~----v~~llp~----Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~a 1518 (2058)
++++ + ...+-.. ..=.+..++.-+..+++..+-++.-..|.+ -++..+++.+...+..++-..|.+
T Consensus 1040 lgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~--~n~~~lV~~L~~~l~s~~~i~r~~ 1117 (2067)
T KOG1822|consen 1040 LGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH--VNLDSLVLQLCSLLSSSYLILRRA 1117 (2067)
T ss_pred cccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh--ccHHHHHHHHHHHhcchhhhhhhh
Confidence 3332 1 1111111 111223446666677777777766666663 355688888888888888888899
Q ss_pred HHHHHHHHHhh
Q 000143 1519 GQTALQQVGSV 1529 (2058)
Q Consensus 1519 A~~aL~~l~~~ 1529 (2058)
...++.+++..
T Consensus 1118 ~~~clrql~~R 1128 (2067)
T KOG1822|consen 1118 SFSCLRQLVQR 1128 (2067)
T ss_pred HHhhhhHHhHH
Confidence 99999888763
No 169
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.38 E-value=2.7 Score=55.18 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=123.7
Q ss_pred HHHHHHHHhChhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH-H-h----c-CCCH
Q 000143 1829 HGRAIIEVLGRDKRN--EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS-S-L----A-SSSS 1899 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~--~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~-~-L----~-~~~~ 1899 (2058)
....+.+.+....++ +.+..+..+-.|+...|-..|.+.++.+..... =..++..++..... . - . --+.
T Consensus 220 ~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~e--d~~~V~~L~~Ly~G~~~~~~~~~~pa~~ 297 (501)
T PF13001_consen 220 RKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLE--DPDLVDRLFDLYLGKGIPPENGRPPASP 297 (501)
T ss_pred HHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhcCCchhcCCCCCCH
Confidence 334455666555552 344555556688888999999999998765422 22455555555441 0 0 0 1133
Q ss_pred HHHHHHHHHHHHHHHHhCc-chhhchHHHHhhhcCCC--ChhHHHHHHHHH---HHHHHhhChhhhHhHHhhHHHHHHHH
Q 000143 1900 ERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDP--SASRRQGVCIGL---SEVMASAGKSQLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~-~~l~~llp~L~~~l~d~--~~~vR~~a~~aL---~eii~~~~~~~l~~~~~~ll~~L~~~ 1973 (2058)
..|. +.|+-+++.... ...+.++..+..++.++ +...|..+...+ ..++..+++..+...-+.+...+.+.
T Consensus 298 ~lq~---kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~ 374 (501)
T PF13001_consen 298 RLQE---KILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPL 374 (501)
T ss_pred HHHH---HHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccc
Confidence 4443 455566665432 35788888888998877 456666666666 66667776665555445555555555
Q ss_pred hc--------CCCHHHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHhcCCC--cchHHHHHHHHHHHhhc
Q 000143 1974 LC--------DSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDD--QTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1974 L~--------D~d~~VR~~Aa~a~~~l~~~~g~~~~--~~ilp~Ll~~L~~~--~~~~~al~aL~~i~~~~ 2032 (2058)
+. ..+...|..|-+++|.+.+....... -.++..|++.|.++ +.+-++-+||..++.+.
T Consensus 375 ~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 375 IQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 52 24678999999999999987654221 26788899999653 34556666666555543
No 170
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.34 Score=56.42 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHhcc
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLE 1468 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v---~~llp~Ll~~L~ 1468 (2058)
+|...-.++..+..++..-.+.+.+.+..++..+.+.++.....|..+|+.+++.++..+..... +..+-.|+..-.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~ 180 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS 180 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89888888888888888777777888888999999999999999999999999999988887543 444445554445
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
.++-.+|..|-.+|.+|.++...+ .+++.|...+...++.+|..++.+.......++
T Consensus 181 ~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 181 QDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred ccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 667788999999999999875433 456667777888899999999988877766554
No 171
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.06 E-value=0.2 Score=55.41 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=73.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH-
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR- 1583 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~- 1583 (2058)
.-.+.|++++||.+|+.++..+-+.. .+++. . -++..... ..|... ...++.++-.+++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~-------~-Ae~~~~~~---------~sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGS-KPFLA-------Q-AEESKGPS---------GSFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHcc-HHHHH-------H-HHhcCCCC---------CCcccH--HHHHHHHHHHHHHH
Confidence 34678999999999999999998753 22221 1 11111000 011110 0122223333333
Q ss_pred ---hh-cCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1584 ---GL-RERSAETKKKAAQIVGNMCSLVTEPKD-MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1584 ---~L-~d~s~~vr~~A~~~l~~L~~~l~~~~~-l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
.+ .+.+..+-.+..+++..+... +.... -..+++.++..+...+.+.++++|..+..++|.+...
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~-tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQA-TPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHcc-CChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 33 345566777777788777663 22111 1335666777777778888999999999999998754
No 172
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.98 E-value=0.36 Score=53.22 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=92.0
Q ss_pred hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCh-
Q 000143 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGM- 1998 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D-~d~~VR~~Aa~a~~~l~~~~g~- 1998 (2058)
+..+...+...++++++..|...+.-++.++..++.+.+..+....+..+.+.++. ..+.+++.|..++..+....+.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556777888888888877777888888887887767777778888887765 4567899999999999877652
Q ss_pred ---------hhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcCCccchh
Q 000143 1999 ---------QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2058)
Q Consensus 1999 ---------~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~~~~~lp~ 2039 (2058)
+.+..+++.+++.++++...+.++.+|..+|.++|...=|+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccch
Confidence 34667888888888876678899999999999987765553
No 173
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.93 E-value=1.8 Score=55.33 Aligned_cols=298 Identities=16% Similarity=0.240 Sum_probs=141.8
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhc----ccCCChHHHhhHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL----KSDNSNVERSGAAQGL 1682 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L----~~d~~~~~R~~aa~~L 1682 (2058)
..++.|+.+.++..|...+.-+...--+..++|+..+....+++ +...+++.|...+ ++..++.--.....++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 36788899999999988876432121234455555555555544 2334444444443 3444554555677788
Q ss_pred HHHHHHhchh------HH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1683 SEVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1683 ~~i~~~~g~~------~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
+.+++..... .+ +.++|.+.. +-..--.+|.||.-+++..++..-..+ .+
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~-------------------ILq~dV~EF~PYvfQIla~Lle~~~~~--~~-- 153 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQE-------------------ILQQDVQEFIPYVFQILAQLLELRPSS--PL-- 153 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHH-------------------HHHTT-TTTHHHHHHHHHHHHHHSS----S---
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHcCCCC--CC--
Confidence 8777764432 11 223333333 223333467777777777777654411 00
Q ss_pred HHHHHHHHHHHHhcccchhchHHhHhh-hcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH
Q 000143 1756 AALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~~l~~llp~L~~-~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~ 1834 (2058)
.+ ....++|.|.. .+-+..-.+ -+.+.++..++.+.+... . ..+.+.
T Consensus 154 -------------p~-~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i----~-------------~~~~l~ 201 (435)
T PF03378_consen 154 -------------PD-AYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI----V-------------ANNQLE 201 (435)
T ss_dssp --------------T-TTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG---------------------S-CH
T ss_pred -------------cH-HHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh----c-------------chhhHH
Confidence 01 11112222221 111111111 233445555554322110 0 000111
Q ss_pred HHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000143 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-SSERRQVAGRALGEL 1912 (2058)
Q Consensus 1835 ~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L 1912 (2058)
.+|| +.+.+...... -..+..++..++.+.|. .+.+|++.++..+...+++. .......-+..++-+
T Consensus 202 ~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 202 PILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 1222 11122222111 13466788888888885 67899999999999888754 333344444445555
Q ss_pred HHHhCcch------------hh-----chHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh--hhHhHHhhHHHHHHHH
Q 000143 1913 VRKLGERV------------LP-----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--QLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1913 ~~~lg~~~------------l~-----~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~--~l~~~~~~ll~~L~~~ 1973 (2058)
+-+.|.+. +. -++|.+.+. ..+..|-.++.++..++.....- .....+..++..+.+.
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~---~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~l 347 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV---SGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKL 347 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG-----SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc---CCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHH
Confidence 55555442 11 123333322 23456777777888888554321 1123445666666666
Q ss_pred hcC
Q 000143 1974 LCD 1976 (2058)
Q Consensus 1974 L~D 1976 (2058)
+..
T Consensus 348 l~~ 350 (435)
T PF03378_consen 348 LER 350 (435)
T ss_dssp HHT
T ss_pred HcC
Confidence 643
No 174
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=16 Score=46.54 Aligned_cols=272 Identities=13% Similarity=0.223 Sum_probs=143.2
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh--HhccCCc-chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhH
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK--HLAKDDP-KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM 1328 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~--~l~~~~p-~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~ 1328 (2058)
...++..+..+++..+.+++ ..=+.++.++|+=-+ +++++.- ....++...+..++ +...-.++.+|+..+.
T Consensus 151 ~~~~L~~l~~lLe~~~l~~~---~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll 225 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKSS---DDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALL 225 (559)
T ss_pred HHHHHHHHHHHHhhcCCChh---hHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHH
Confidence 44556666666666444322 233556666665443 2322210 01234445555555 2233445666665555
Q ss_pred hhccc-----ch-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh------CccccchhchHHHHHHHHhCC
Q 000143 1329 QSMQD-----EA-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF------GISSLKKYGIAATLREGLADR 1390 (2058)
Q Consensus 1329 ~~~~~-----~~-------~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~------g~~~l~~~~il~~L~~~l~~~ 1390 (2058)
+.... .. ...++..+..-...++...+.+-+.-+..+.+.. +++.. ..++..+.-.....
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~--l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF--LRIVELLLLVAGHN 303 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc--hhHHHHHHHhccCC
Confidence 43211 01 1223334444444556665555444444443321 11110 12333333333333
Q ss_pred CCHHHHHHHHHHHHHHHHHhc--------ccchhhHHHHHHHHHHHcCCC---------C---HHHHHHHHHHHHHHHHh
Q 000143 1391 NSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ---------V---VAVREAAECAARAMMSQ 1450 (2058)
Q Consensus 1391 ~~~~~R~~al~al~~L~~~lg--------~~~~p~l~~llp~Ll~~l~D~---------~---~~VR~aA~~al~~l~~~ 1450 (2058)
++++-+..+..+-.+.+.+- ..|.||..+++..+.....=+ + ..-|....+.+.-+.-.
T Consensus 304 -~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~i 382 (559)
T KOG2081|consen 304 -DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFI 382 (559)
T ss_pred -chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555431 258899999998888755421 1 24577777777666555
Q ss_pred hhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1451 LSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1451 l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.+... ++...-.+.+ ....|+.-.+++..+..++...+..-...+|.++..+.++ +....+|..++--+|.+.++
T Consensus 383 igs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew 458 (559)
T KOG2081|consen 383 IGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEW 458 (559)
T ss_pred hCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHH
Confidence 54432 2333222222 3567999999999999999876654444444444443322 12234999999999999998
Q ss_pred cC-chhH
Q 000143 1530 IK-NPEI 1535 (2058)
Q Consensus 1530 ~~-~~~i 1535 (2058)
+. +|..
T Consensus 459 ~~~~p~~ 465 (559)
T KOG2081|consen 459 VEQHPEL 465 (559)
T ss_pred HHhCcHH
Confidence 75 3443
No 175
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.80 E-value=10 Score=56.07 Aligned_cols=313 Identities=12% Similarity=0.132 Sum_probs=167.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh------hH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ------GV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~------~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~ 1491 (2058)
.+-+.+...-..++..|+.-|.+.|++++..+-.. .+ +.++.++...+. ..+..+|...++.+..|......
T Consensus 1137 ~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1137 VLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 34444444444556779999999999887654432 12 567777766665 45678999999999999988888
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-C------chhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-K------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
.+..-.+.|+..+.....|.++.+-..|.+++..+.... + ...+..++..+.+...... ...-++.++..
T Consensus 1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~l-- 1293 (1780)
T PLN03076 1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAF-- 1293 (1780)
T ss_pred hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHH--
Confidence 888888899988888888989888888888888776421 1 0122333333322221110 00011111110
Q ss_pred ccccCChhhHhhHHHHHHHhh-cC--C--CHHHH----HHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGL-RE--R--SAETK----KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L-~d--~--s~~vr----~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~v 1635 (2058)
+..+...+.+.- .. . ..... ............ +.+..+...+.=.++..|..+..|+.++|
T Consensus 1294 ---------L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~lW~pLL~~Ls~l~~D~RlEV 1363 (1780)
T PLN03076 1294 ---------LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGE-FTDKDDHLYFWFPLLAGLSELSFDPRPEI 1363 (1780)
T ss_pred ---------HHHHHHHHHhccccccccccccccccccccccccccccccc-cccchhHHHHHHHHHHHHHHHhcCCcHHH
Confidence 111112221110 00 0 00000 000000000000 01111212222235555666677999999
Q ss_pred HHHHHHHHHHHHHhhcccC--------ccchHHHHHhhcccC-----------------C------ChHHHhhHHHHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEEN--------FPDLVSWLLDALKSD-----------------N------SNVERSGAAQGLSE 1684 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~--------~~~llp~L~~~L~~d-----------------~------~~~~R~~aa~~L~~ 1684 (2058)
|..|...|=.+....|..+ +..++-.+++.++.. . .| .......+|..
T Consensus 1364 R~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W-l~eT~~~AL~~ 1442 (1780)
T PLN03076 1364 RKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW-LYETCTLALQL 1442 (1780)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH-HHHHHHHHHHH
Confidence 9999999888887777652 334454555555321 0 01 12333344444
Q ss_pred HHHHhchh------HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH-hHHHHHHHHHHhc
Q 000143 1685 VLAALGTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGL 1746 (2058)
Q Consensus 1685 i~~~~g~~------~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p-yl~~ilp~Ll~~L 1746 (2058)
++.-+..- .++.++..+...++.++..+-.....||..+....|..|.+ ....++..+.+.+
T Consensus 1443 lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1443 VVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 44333321 22333334444455667777777788888888888877643 3444555554443
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.71 E-value=0.66 Score=61.57 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhc-----hHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1753 VRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1753 VR~~a~~al~~lv~~~~~~~l~~-----llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
.|-.|+.-+..+.. +++=++++ ++|.+.+.++......|..-+-....++ . .+.
T Consensus 486 HRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKIL-----------A--vD~------- 544 (1387)
T KOG1517|consen 486 HRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKIL-----------A--VDP------- 544 (1387)
T ss_pred HHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHH-----------h--cCc-------
Confidence 45556666666543 23323322 8999999998877666665443333332 0 000
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcCC-CHHHHHHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS-SSERRQVA 1905 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~~-~~~~R~~A 1905 (2058)
.....|++--|..+|-+++.. -......-|..|.-++..++.+++..-+..+ +.++......+.++ .+-.|+..
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~----~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~ 620 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDP----SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL 620 (1387)
T ss_pred hhHHHHHhccCceeEEEEecC----cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence 000112222222222222211 0112345677788899999988775544433 46677777778884 78999999
Q ss_pred HHHHHHHHHHhCcch----hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---hhhH------------hHHhhH
Q 000143 1906 GRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLL------------SFMDEL 1966 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~~----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---~~l~------------~~~~~l 1966 (2058)
+-|||.|-....+.- -...-..|...+.|+.++||..++.|||.++...+. ++.. --.+..
T Consensus 621 ~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~ 700 (1387)
T KOG1517|consen 621 CICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL 700 (1387)
T ss_pred HHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence 999999987665331 122334455667889999999999999999876311 1100 012233
Q ss_pred HH----HHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1967 IP----TIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1967 l~----~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
+. .+..+++|..+-||...+.++..+.
T Consensus 701 i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 701 IIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33 5666789999999999888888775
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=21 Score=46.95 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=115.7
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC---hhHHHHHHHHHhccccccCChhhHh
Q 000143 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1500 Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~---~~vr~al~~L~~~~f~~~~~~~~l~ 1575 (2058)
-++.|+..+.. +-.+=|+.|+.+|+.|+...+......-++.++..+.... +.+..+++++.-. +.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il-~~--------- 92 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL-TS--------- 92 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH-Hh---------
Confidence 34444443332 3356699999999999987664443444455555554321 2233445544320 00
Q ss_pred hHHHHHHHhhcCCCHHHHH---HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1576 LLVPIVHRGLRERSAETKK---KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~~vr~---~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
.|.++.+-. .+.+.=..++..+... +..+..++..+...+..||..++.-+.++...-|.
T Consensus 93 ----------~dd~~~v~dds~qsdd~g~~iae~fik~-------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 93 ----------HDDSPEVMDDSTQSDDLGLWIAEQFIKN-------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT 155 (970)
T ss_pred ----------cCcchhhcccchhhhHHHHHHHHHHHcC-------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH
Confidence 111111111 1222222333322221 23566777777778889999999999999988776
Q ss_pred c------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccC----ChhHHHHHHH
Q 000143 1653 E------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQ----RASVRDGYLT 1718 (2058)
Q Consensus 1653 ~------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~----~~~vR~~al~ 1718 (2058)
+ .+|.-+..+|+.|. |....+|..+.--|.++.+..+.- .++..+..++..+... ..-|-+-++.
T Consensus 156 e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 5 46778888888887 444458988888888888776642 3455555566555442 3355566666
Q ss_pred HHHHhHHH
Q 000143 1719 LFKYLPRS 1726 (2058)
Q Consensus 1719 ~l~~la~~ 1726 (2058)
.+.++-+.
T Consensus 235 ll~NLLK~ 242 (970)
T KOG0946|consen 235 LLNNLLKN 242 (970)
T ss_pred HHHHHHhh
Confidence 66666553
No 178
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.63 E-value=18 Score=45.78 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHHHh------hcCchhHHhHHHHHHhccCCCCh--h-HHHHHHHHHhccccccCChhh-HhhHHHHH
Q 000143 1512 HPKVQSAGQTALQQVGS------VIKNPEIASLVPTLLMGLTDPND--H-TKYSLDILLQTTFVNTVDAPS-LALLVPIV 1581 (2058)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~------~~~~~~i~~lvp~Ll~~l~d~~~--~-vr~al~~L~~~~f~~~~~~~~-l~~llp~L 1581 (2058)
+.++-.+|.++++.|.. .+.+....-++...+..+.+++. . ++.++..+...+|....-... ...++..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 45666777777776653 22233334477777788877753 2 245677776666665443222 22233333
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHH
Q 000143 1582 HRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2058)
Q Consensus 1582 ~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp 1660 (2058)
...-+ =.+..+-.+...++.++... .|..+..+.+..+|.+...+.+....+|..|....-.+...+|++. .+..
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~--~~s~ 214 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQ--FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK--ELSK 214 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH--HHHH
Confidence 33222 24455666666677776652 3445556666667777777777788889886666655555666431 1122
Q ss_pred HHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh---HHHhHHH
Q 000143 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ---FQNYLQQ 1737 (2058)
Q Consensus 1661 ~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~---f~pyl~~ 1737 (2058)
.+.+.+....... .+.+.+.+.+...+.+.+.. ..++..++.+..-+|.. -.+|+..
T Consensus 215 ~~~~~~~~~~~~~------------------~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 215 SVLEDLQRSLENG------------------KLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHHHHhccccccc------------------cHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222222111110 01122333333333331111 12344455444444532 2368889
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc------chhchHHhHhhhcCCC-----CHHHHHHHHHHHHHHHHH
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATT------SLPLLLPAVEDGIFND-----NWRIRQSSVELLGDLLFK 1805 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~------~l~~llp~L~~~l~d~-----~~~vR~sav~ll~~Ll~~ 1805 (2058)
.+.....++.+.++.+|..|..|.+.++...... .+..+.-.+...+..+ ...+|...+..++.++|.
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 9999999999999999999999999998754332 1222223333323211 125666666666666653
No 179
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.60 E-value=0.69 Score=52.98 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH-----hCCCCHHHHHHHHHHHHHHH
Q 000143 1333 DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLC 1407 (2058)
Q Consensus 1333 ~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l-----~~~~~~~~R~~al~al~~L~ 1407 (2058)
.+..-|++.+...|.++.+...|.+|..+|. ...|.. .++|+....+ ++-+|-..-...++.+..+.
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlh-----QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESLR---NDSGLH-----QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3456678888888877777888888877763 233332 3444444333 22233334444445455555
Q ss_pred HHhcccchhhHHHHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhhhhh--H-HhHHHHHHHhccC--CCh
Q 000143 1408 EKLGRLFEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLED--KAW 1472 (2058)
Q Consensus 1408 ~~lg~~~~p~l~~llp~Ll~~l------~D~~~----~VR~aA~~al~~l~~~l~~~~--v-~~llp~Ll~~L~~--~~~ 1472 (2058)
..-.-.++||+.+++|.++.|+ ++++. .+|+-|+..++.+.++++... + +++...+++.+-| .-.
T Consensus 265 ~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~ 344 (450)
T COG5095 265 KNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTE 344 (450)
T ss_pred cCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccccc
Confidence 4444567999999999988764 22322 489999999999998888632 2 5666666666544 346
Q ss_pred HHHHHHHHHHHHHHhh
Q 000143 1473 RTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~ 1488 (2058)
.+..+|+..+..+...
T Consensus 345 sT~YGalkgls~l~ke 360 (450)
T COG5095 345 STQYGALKGLSILSKE 360 (450)
T ss_pred chhhhhhhhhhhhchh
Confidence 6778888877776543
No 180
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.59 E-value=0.42 Score=52.96 Aligned_cols=136 Identities=24% Similarity=0.277 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHH-hcccchhhHHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-----
Q 000143 1394 KRREGALLAFECLCEK-LGRLFEPYVIQMLPLL------------LVAFSDQVVAVREAAECAARAMMSQLSAQG----- 1455 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~-lg~~~~p~l~~llp~L------------l~~l~D~~~~VR~aA~~al~~l~~~l~~~~----- 1455 (2058)
++|.+|+.++..+++. -++.|-.|...++|.- --.+.|+++.||.+|..++..+.....++-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 4567888888777754 235679999999999999998876543210
Q ss_pred --------------HHhHHH----HHHHhcc-CCChHHHHHHHHHHHHHHhhChhh-H-hhhhhhHHHHHHHHhcCCCHH
Q 000143 1456 --------------VKLVLP----SLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-L-SQCLPKIVPKLTEVLTDTHPK 1514 (2058)
Q Consensus 1456 --------------v~~llp----~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~-l-~~~L~~Iip~L~~~L~D~~~~ 1514 (2058)
+-.++- .++..+. +.+...-...++.+..+....|-. + ...++.++..+...+.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 111222 2333344 345566667788888888777632 2 345667777778888888899
Q ss_pred HHHHHHHHHHHHHhh
Q 000143 1515 VQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~ 1529 (2058)
||.++..+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.54 E-value=0.32 Score=53.21 Aligned_cols=146 Identities=15% Similarity=0.230 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC--hhHHHHHHHHH-hccccccCChh
Q 000143 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILL-QTTFVNTVDAP 1572 (2058)
Q Consensus 1497 L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~vr~al~~L~-~~~f~~~~~~~ 1572 (2058)
.|++++.+.+.++. .++.+|..+.+++|.+|.. +|+.-..+ .....+.. .....+.+... ........++-
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSI---QKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcc---cccCCccccccccccchhhHHhhccCCCchHHH
Confidence 47788888888864 4699999999999999875 44432110 00011000 00000111111 00111112222
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
.....+..+.+.++|.+- .-...+.+++..+.+.++. ...||+++++|.+...+.......|+.....++.++..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~--~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL--KCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc--CchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334466777778888653 3344577777777765443 35899999999999999987779999999898888754
No 182
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.47 E-value=5.4 Score=50.45 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=137.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--HH-H
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF-E 1695 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~l-~ 1695 (2058)
+...+..+++.+...+...+..++.. |.. ..+.++.++.+.+++..+...+..++++++.++..-.-. +. .
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACF-GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhc-CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 33456667888888999888888742 222 223355666666664333334556677887776432211 11 2
Q ss_pred HhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhcc
Q 000143 1696 HILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADEN-ESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~-~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+.++.+...++.. +.+..-.++-|+.-+ +|.++....+ ..++|.+...+.+.. +.|-..++.++..++..-..
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLL--TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHH--hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 2445555544432 223333333222222 2222222222 458888888877643 44555566666665543211
Q ss_pred cchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhCh-----hhHHH
Q 000143 1771 TSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR-----DKRNE 1844 (2058)
Q Consensus 1771 ~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~-----~~~~~ 1844 (2058)
.... .+.+.+... .....+..|-. +. -.|+| . . +-...+.+.|.+ ..||+
T Consensus 263 ~~~~~~~~~~mv~~----------~l~~~l~~L~~-------rk----~~Ded-L-~-edl~~L~e~L~~~~k~ltsfD~ 318 (429)
T cd00256 263 REVKKTAALQMVQC----------KVLKTLQSLEQ-------RK----YDDED-L-T-DDLKFLTEELKNSVQDLSSFDE 318 (429)
T ss_pred cchhhhHHHHHHHc----------ChHHHHHHHhc-------CC----CCcHH-H-H-HHHHHHHHHHHHHHHHcCCHHH
Confidence 1000 011111100 00001111100 00 00110 0 0 000111111111 12333
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc--chhh
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLP 1922 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~--~~l~ 1922 (2058)
....+..+.-+-++. ......|+.=+..+...--+.+..+...+ -.+.++.+-..|+.=+|++++..+. .++.
T Consensus 319 Y~~El~sg~L~WSp~--H~se~FW~EN~~kf~~~~~~llk~L~~iL---~~s~d~~~laVAc~Dige~vr~~P~gr~i~~ 393 (429)
T cd00256 319 YKSELRSGRLHWSPV--HKSEKFWRENADRLNEKNYELLKILIHLL---ETSVDPIILAVACHDIGEYVRHYPRGKDVVE 393 (429)
T ss_pred HHHHHhcCCccCCCC--CCCchHHHHHHHHHHhcchHHHHHHHHHH---hcCCCcceeehhhhhHHHHHHHCccHHHHHH
Confidence 333333221010000 00123455444333222223344444333 1355677778899999999999753 2333
Q ss_pred c--hHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1923 S--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1923 ~--llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
+ .-..+.+.++++++++|..|..|+..++.
T Consensus 394 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 394 QLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 33456677889999999999999987764
No 183
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=26 Score=49.77 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=103.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~--~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~ 1455 (2058)
.++..+.....++..|++|-+++..+....= ..+ .++.....+--.+...+.|.+-.||+.|..++.-++..--...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 6666666656666789999998776654432 233 4566677788888899999999999999999988864322222
Q ss_pred HHhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1456 v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
+............ ..+.-..++|+..+|+++-..|-.+-..+|..+..+....+|+ ..+++++-+++..|-..-.
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 2212222222222 2344567789999999998888776666666666666666665 6788888888888866443
No 184
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.26 E-value=0.58 Score=57.99 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=88.6
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCC
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~ 1570 (2058)
+++..|+..|.. .+.+.+...|..|+..|. .++.++.++|.+...+.+.- +..+
T Consensus 174 ~Elq~yf~~It~----a~~~~~~~~r~~aL~sL~------tD~gl~~LlPyf~~fI~~~v---~~n~------------- 227 (343)
T cd08050 174 KELQLYFEEITE----ALVGSNEEKRREALQSLR------TDPGLQQLLPYFVRFIAEGV---TVNL------------- 227 (343)
T ss_pred HHHHHHHHHHHH----HHhCCCHHHHHHHHHHhc------cCCCchhhhhHHHHHHHHHH---Hhhh-------------
Confidence 444455555444 444456677776665543 26778888888887664321 1000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhh----------CCCCHHHHHHHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL----------VDPIPEVRSVAA 1640 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l----------~d~~~~vR~~a~ 1640 (2058)
.+ +...-....+++..|.. +..-.+.+|+..++|.++.++ .+..|.+|+.|+
T Consensus 228 ---------------~~-nl~~L~~lm~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 228 ---------------DQ-NLALLIYLMRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred ---------------cc-cHHHHHHHHHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 00 11112222233333333 233567899999999999876 246799999999
Q ss_pred HHHHHHHHhhcccC---ccchHHHHHhhcccCC-ChHHHhhHHHHHHHH
Q 000143 1641 RAIGSLIRGMGEEN---FPDLVSWLLDALKSDN-SNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~~---~~~llp~L~~~L~~d~-~~~~R~~aa~~L~~i 1685 (2058)
+.++.+++.++..| .+.++..+.+.+.+.. .....-|+..+|+.+
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999998873 2334444444444332 222366777777654
No 185
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.21 E-value=4.2 Score=54.89 Aligned_cols=195 Identities=16% Similarity=0.104 Sum_probs=104.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh----
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---- 1453 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---- 1453 (2058)
..+.++.+.+.+++-. ..+ +..++..+.......-..++..+.+.+-.....+++.+|..|.-+++.++...-.
T Consensus 357 ~a~~~i~~~i~~~~~~-~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKKIT-PLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666654321 112 2223333333332222344444444433222334778999999999888763321
Q ss_pred ---hhHHhHHHHHHHhcc----CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc---CCCHHHHHHHHHHH
Q 000143 1454 ---QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1454 ---~~v~~llp~Ll~~L~----~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~---D~~~~VR~aA~~aL 1523 (2058)
..+..+++.+.+.+. +.+...+...+.+||++.. +..++.+...+. +....+|.+|++||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 113556666665553 3455567788999998764 233344444443 34578999999999
Q ss_pred HHHHhhcCchhHHhHHHHHHhccCCCC--hhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1524 QQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1524 ~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
..++...... +.+.++....|+. ..+| .|+..+..+ .|+...+-.+....-.|++..|+..
T Consensus 505 r~~a~~~p~~----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 505 RNLAKRDPRK----VQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHhCchH----HHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHHH
Confidence 9998754433 3333444444443 3467 566555431 1444434444444445566666543
No 186
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.89 E-value=0.54 Score=58.80 Aligned_cols=150 Identities=20% Similarity=0.292 Sum_probs=92.5
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChh--HHHHHHHHHhccccccC
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~--vr~al~~L~~~~f~~~~ 1569 (2058)
++.-|+.+|+.. +.+.++.-|+.|+++|.. ++-++.++|.+...+.+.-.. +...+..|.
T Consensus 204 ElQlYy~~It~a----~~g~~~~~r~eAL~sL~T------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~-------- 265 (576)
T KOG2549|consen 204 ELQLYYKEITEA----CTGSDEPLRQEALQSLET------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLI-------- 265 (576)
T ss_pred HHHHHHHHHHHH----HhcCCHHHHHHHHHhhcc------CccHHHHHHHHHHHHhhheeeccccccHHHHH--------
Confidence 344455555544 444678889988887743 677888999988877654211 011111111
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC----------CCCHHHHHHH
Q 000143 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVA 1639 (2058)
Q Consensus 1570 ~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~----------d~~~~vR~~a 1639 (2058)
.++. ++-.|.. +..-.+.||+..+||.++.++. |..|.+|.-|
T Consensus 266 ------~lm~-------------------m~rSLl~--Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 266 ------YLMR-------------------MVRSLLD--NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred ------HHHH-------------------HHHHHhc--CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 1111 1122221 1224678999999999988754 6789999999
Q ss_pred HHHHHHHHHhhcccCcc---chHHHHHhhcccC-CChHHHhhHHHHHHHHH
Q 000143 1640 ARAIGSLIRGMGEENFP---DLVSWLLDALKSD-NSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1640 ~~aLg~l~~~lg~~~~~---~llp~L~~~L~~d-~~~~~R~~aa~~L~~i~ 1686 (2058)
++.+..+++.++..|.. .+...+...+.+. ......-|+..+|.++.
T Consensus 319 A~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 99999999999887533 3444444444433 34445667777776653
No 187
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.60 E-value=19 Score=46.25 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=109.9
Q ss_pred CchhhhHhhhhHHHHHhh----CC-CCHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhhH
Q 000143 1611 KDMIPYIGLLLPEVKKVL----VD-PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2058)
Q Consensus 1611 ~~l~pyl~~ll~~L~~~l----~d-~~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~a 1678 (2058)
+++.|+...+++.|...+ .+ .+|.--....+++|.+.+...+. +-+.++|.+...|.+|-.. .--.+
T Consensus 59 e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~E-F~PYv 137 (435)
T PF03378_consen 59 EDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQE-FIPYV 137 (435)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TT-THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456777776666665554 33 47888889999999999865532 2345788887888765433 45677
Q ss_pred HHHHHHHHHHhchh----HHHHhhHHHHHhhcc-CChhHHHHHHHHHHHhHHHhchhHH--HhHHHHHHHHHHhccCCCH
Q 000143 1679 AQGLSEVLAALGTV----YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQ--NYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~----~l~~llp~Ll~~l~~-~~~~vR~~al~~l~~la~~~g~~f~--pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
.+-++.+++..... ....++|.++...-- ....+ .+...++..+....+..+. +++..++..+-+++.....
T Consensus 138 fQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~ 216 (435)
T PF03378_consen 138 FQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN 216 (435)
T ss_dssp HHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc
Confidence 88888888766522 334555655533211 11122 4445555554444444443 5778888888888876542
Q ss_pred HHHHHHHHHHHHHHHHhcccchhchHHhHhhhc-----CCCCHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-----FNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-----~d~~~~vR~sav~ll~~L 1802 (2058)
+ ..+.+-+..++..+..+.++..++.+...+ ....++.+...+..+.-+
T Consensus 217 D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 217 D--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp H--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred c--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 2 346777888888888777777666665444 344555555555555544
No 188
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.60 E-value=1.8 Score=56.40 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=117.6
Q ss_pred HHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CCCHHHHH
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVRE 1438 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~~~~VR~ 1438 (2058)
.+|..++.++....+ .+.++|.+.+.+.+.+ .--..+-.+-.|+++.. -..|...++|.+...++ -....++-
T Consensus 295 k~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s--~~~~~~~~~p~l~pi~~~~~~~~~~l 368 (700)
T KOG2137|consen 295 KGLSKLIPTFPARVL-FQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLS--QNEFGPKMLPALKPIYSASDPKQALL 368 (700)
T ss_pred HHHHHhhccCCHHHH-HHhhhhHHHHHhcccc---ccccccchhhhhhhccc--hhhhhhhhhHHHHHHhccCCcccchh
Confidence 344444444432222 3466666666554432 00011112233444433 24566677888877776 33455666
Q ss_pred HHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHH-hcCCCHHHH
Q 000143 1439 AAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKVQ 1516 (2058)
Q Consensus 1439 aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~-L~D~~~~VR 1516 (2058)
.-.+-++.|.+.++++.+ ..++|.|...+++.+-+....++..+..+++..+-.... ..|+|.+.++ +...+..|+
T Consensus 369 ~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred hHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHH
Confidence 667778888888888776 889999999999999999999999999999887644333 3677877765 345678999
Q ss_pred HHHHHHHHHHHhhcCchhH-HhHHHHHHhc-cCCC
Q 000143 1517 SAGQTALQQVGSVIKNPEI-ASLVPTLLMG-LTDP 1549 (2058)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~-l~d~ 1549 (2058)
..++-|++.+.+.+....+ +.+.|.+... ..||
T Consensus 447 vn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp 481 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDP 481 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 9999999999976654433 4444444433 3444
No 189
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.60 E-value=15 Score=49.64 Aligned_cols=171 Identities=19% Similarity=0.092 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhc-
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLG- 1411 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~---~~~~~R~~al~al~~L~~~lg- 1411 (2058)
...+..+.+.+...+-.. ..++..+..+..... -+...++..+...+.++ .++..|..|+.+++.+.....
T Consensus 356 ~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~---~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 356 PPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR---YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh---cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555543211 233344443333221 01225666676666543 356789999999999987432
Q ss_pred cc-------chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc---CCChHHHHHHHHH
Q 000143 1412 RL-------FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE---DKAWRTKQSSVQL 1481 (2058)
Q Consensus 1412 ~~-------~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~---~~~~~~R~~a~~~ 1481 (2058)
.. .+.++..+...+-.+..+.+...+...+.+|+.+. .+..++.+...+. ......|..|+.+
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 11 12233333333334444555666677777777553 2233333333333 3356899999999
Q ss_pred HHHHHhhChhhHhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 000143 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1482 Lg~la~~~p~~l~~~L~~Iip~L~~~L~D--~~~~VR~aA~~aL~~ 1525 (2058)
|..++..+|....+. +...+.| .+++||.+|+..|-.
T Consensus 504 lr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 504 LRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHHHHHHHHh
Confidence 999998887765543 3334433 578999999887754
No 190
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.39 E-value=0.68 Score=50.41 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhhhh-hHHhHHHHHHHhccCCChHH
Q 000143 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~------------------D~~~~VR~aA~~al~~l~~~l~~~-~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
+.|++.+++|.++.-.. |+.-.+|.+|.+++..+....... .+..++..+..++.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888886443 445689999999999998865543 357788899999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
|..+...+..++..+|..+...+..+++.+...++
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888874
No 191
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.00 E-value=3.1 Score=54.29 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=92.6
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2058)
+.+.++|.|...++|.+..+++.+.+.++.+++.+.... -..++|.+...........++..++.|++.+++.+..-..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 466789999999999999999999999999998876442 3468888877655556666888899999999877665544
Q ss_pred HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh--chhHHHhHHHHHHHHHHhcc
Q 000143 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL--GVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~--g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
-+.++.+....+..++.+..+.+.++..++... |.++ ....++|.+.....
T Consensus 466 ~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev--~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 466 LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV--MAENVLPLLIPLSV 518 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee--ehhhhhhhhhhhhh
Confidence 344445666666778888877777776665433 2222 33456666665443
No 192
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.86 E-value=96 Score=48.35 Aligned_cols=285 Identities=16% Similarity=0.196 Sum_probs=147.8
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh----hccc-------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG----MGEE-------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~----lg~~-------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
.+++++...+...+.+++..+..++..+-.. +|.. .+..+++.+.+... ++.+-.|.+...+++-++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy-~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCY-DSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhc-cHhHHHHcCCCceeeeehh
Confidence 3678888889888999999999999887764 3422 23344444444333 4556567777777666555
Q ss_pred HhchhH----HHHhhHHHHHhhccC-----C---hhHHHHHHHHHHHhHHHhch--hHHHhHHHHHHHHHHhccCCCHHH
Q 000143 1688 ALGTVY----FEHILPDIIRNCSHQ-----R---ASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESV 1753 (2058)
Q Consensus 1688 ~~g~~~----l~~llp~Ll~~l~~~-----~---~~vR~~al~~l~~la~~~g~--~f~pyl~~ilp~Ll~~L~d~~~~V 1753 (2058)
.+.... ...++..++..+.+. + ..++...+..+.......+. .=......++.++...+.++++.|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 544221 133444444444432 1 12233333333222222111 111344567788888899999999
Q ss_pred HHHHHHHHHHHHHHhcccchhchHHhHhhhc----C-CCC-HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGI----F-NDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1754 R~~a~~al~~lv~~~~~~~l~~llp~L~~~l----~-d~~-~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
|+.+...+..+.+..+....+.+.| +.+.+ + .+. -.-|...+..+...-|+..-. +..++ -+++.+...
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p-~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~--p~~f~--~~~~l~~l~ 1217 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEP-FKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG--PCLFD--FTEELYRLK 1217 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC--CcccC--chHHHHHHH
Confidence 9999999999998886554443333 22222 1 010 001111222222222332210 00000 000000000
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhCh---hhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVR----SDVSLSVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~----~D~~~~VR~aA~~~l~~lv~~~~---~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
. .+....+.+..+ ...+.... .....-.|.++.+.+.......+ ....++-+.++..+.+.+..+..+
T Consensus 1218 ~---~~~~La~~~~~~--~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~E 1292 (3550)
T KOG0889|consen 1218 R---FLIALADAEEDE--LATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSE 1292 (3550)
T ss_pred H---HHHHhhhhhhhh--hhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHH
Confidence 0 111111111111 11122221 11133457888888777665433 244567788888888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000143 1901 RRQVAGRALGELVR 1914 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~ 1914 (2058)
.-..+..++-.+..
T Consensus 1293 i~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1293 LIEVALEGLRKVLA 1306 (3550)
T ss_pred HHHHHHHHHHhhhh
Confidence 98888888765543
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.82 E-value=1.4 Score=58.78 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=96.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHH-HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhC--cc-h-
Q 000143 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLAS---SSSERRQVAGRALGELVRKLG--ER-V- 1920 (2058)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~-L~~~l~~~L~~---~~~~~R~~A~~~Lg~L~~~lg--~~-~- 1920 (2058)
.++.++.+...+|..-+-+|..+...-+..-.+.+.. .-...+..+.+ -+.+.|.+|+..|+.+++.+. .. .
T Consensus 517 VLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl 596 (1387)
T KOG1517|consen 517 VLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL 596 (1387)
T ss_pred HHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc
Confidence 3344556666677777777777765333221121111 00000011222 246999999999999998754 22 2
Q ss_pred hhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1921 LPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
-..++.+....++|+ .+-.||-+|++||.+-+......+...-+..-..|...+.|+-++||-+|..|+|.+..+.
T Consensus 597 ~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 357777777888874 6889999999999988776554333222344556777889999999999999999998753
No 194
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.43 E-value=45 Score=43.53 Aligned_cols=288 Identities=15% Similarity=0.096 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D 1431 (2058)
-..|..|+..+...++.+....+. .+-......+..++....|++++..+..+.+.-+.....-=......+...-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 456777777777777766554332 344444455555556677888888777777654321111111111112111222
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC---------------------------ChHHHHHHHHHHHH
Q 000143 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1432 ~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~---------------------------~~~~R~~a~~~Lg~ 1484 (2058)
++-..|-.|..+|..=++.+.. ....+.|.+...+..- +.+.=..-+..+..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2333344444433322222211 0123333333222110 00000112233333
Q ss_pred HHhhChhhH-hhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh--cCchhHHhHHHHHHhccCCC--ChhHHHHHH
Q 000143 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSV--IKNPEIASLVPTLLMGLTDP--NDHTKYSLD 1558 (2058)
Q Consensus 1485 la~~~p~~l-~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~--~~~~~i~~lvp~Ll~~l~d~--~~~vr~al~ 1558 (2058)
+.+.....+ ...+..++..+...+..+ ++..=++++..+..+... +++..+..++..|.....-. .+..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332221111 123345555555554332 333336677777776552 34455667777776654332 112223455
Q ss_pred HHHhccccccCChhhHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHHhhhCCCCchhhh--Hh--hhhHHHHHhh
Q 000143 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IG--LLLPEVKKVL 1628 (2058)
Q Consensus 1559 ~L~~~~f~~~~~~~~l~~llp~L~~~L~------d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~--~ll~~L~~~l 1628 (2058)
.|..... -...+..+...+. .++..+-+.|..+++.+.-. ..++-.|- .. .++|.+..++
T Consensus 241 nL~~S~~--------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~--~~~~~~~~l~~~~~~vl~sl~~al 310 (464)
T PF11864_consen 241 NLLKSHL--------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG--SGEQGYPSLPFSPSSVLPSLLNAL 310 (464)
T ss_pred HHHcCcc--------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc--cccCCcceecccHHHHHHHHHHHH
Confidence 5443111 1123334444441 24556667788888776542 21111111 22 3889999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-Hhhcc
Q 000143 1629 VDPIPEVRSVAARAIGSLI-RGMGE 1652 (2058)
Q Consensus 1629 ~d~~~~vR~~a~~aLg~l~-~~lg~ 1652 (2058)
...++.|-......+..+. ..+|.
T Consensus 311 ~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 311 KSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred hCCCCeehHHHHHHHHHHHhHhhhh
Confidence 8776666555555555555 44443
No 195
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=7.4 Score=50.06 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=102.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhCh-----hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---
Q 000143 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTP-----KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--- 1919 (2058)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-----~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~--- 1919 (2058)
-+|+.+.-.+..||..|..++-.+.+-.+ .....++..-+..+...|.|+.+.+|..|...+..+....-+-
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 45666788889999999988876654322 2233445555555667789999999999999888877665433
Q ss_pred -hhhchHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1920 -VLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1920 -~l~~llp~L~~~l-~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l 1992 (2058)
++.+++..+..-+ .|...++|..+..++.+++.. + +-.+.++.++|.+...+.|+...||-++...+-.+
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p-~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--P-LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--c-cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 3444554444433 356679999999999987753 2 23456788999999999999999999987776554
No 196
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.32 E-value=26 Score=42.63 Aligned_cols=193 Identities=18% Similarity=0.165 Sum_probs=131.0
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+-..|-+.|...-...+-..|......+.+.+|.+.+ .-+.|.++..+....-.||...+..+...-..+|..+.|
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 4445666666444455677788888888888888754 335677777777778899999999998777788889999
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~ 1813 (2058)
.+..++..++.++.|+..++.+.+...+..+...++.+. +...+...+- .+..+|..++..+..-+.+..+
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~----- 205 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRLPKFQN----- 205 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhCCcccc-----
Confidence 999999999999999998899989888888877776652 3344433332 3567888887766554311100
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2058)
Q Consensus 1814 ~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~ 1870 (2058)
+...... ......+|++. .-++.++..++.|.+..|++.+++.+-.
T Consensus 206 ------~~~~~~~----~~~~~~~~~~~-~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 206 ------DELSLSS----EEQEYCLGPDP-GLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred ------cccccch----HHHHHhcCCCc-cHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 0000000 11122333221 2456677788889988898888877644
No 197
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.88 E-value=1.4 Score=44.61 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=65.6
Q ss_pred chHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++..+...+.| +++...|..++.+++.+.+..|..+.++.++++..+...+..+ .+|..|.+++..++..++.+
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455566666665 5577889999999999999666667777777777777777664 89999999999999999988
Q ss_pred hHHhHHHHHH
Q 000143 1455 GVKLVLPSLL 1464 (2058)
Q Consensus 1455 ~v~~llp~Ll 1464 (2058)
.+..+++..+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T PF08064_consen 89 DLGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766655543
No 198
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=83 Score=45.18 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=81.2
Q ss_pred hhhHHHHH-hhCCCCHHHHHHHHHHHHHHHH--hhc--ccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH
Q 000143 1619 LLLPEVKK-VLVDPIPEVRSVAARAIGSLIR--GMG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2058)
Q Consensus 1619 ~ll~~L~~-~l~d~~~~vR~~a~~aLg~l~~--~lg--~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2058)
.++..+.. ...+..|.+|.++.+-+..++- .++ +...+++-..+...+. |.+..+|..++.+|+.+..+--...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhcccccc
Confidence 44455553 3446789999998887776653 222 2234566665655555 5555699999999998876532221
Q ss_pred HHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1694 FEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.............. .+....-+++..+|.+...++-.+--++++.+-.+-....++ ..++.++.+++..+
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseF 1676 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEF 1676 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHH
Confidence 11111111111111 133445677888888888876544334444444444444444 45677666666554
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.78 E-value=6 Score=53.97 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCC------------CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEP------------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~------------~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~ 1656 (2058)
+..++..|.-.++.+....... .....|.+.+...+.......+.+.+..+++|||.++. +
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------~ 520 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------P 520 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------G
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------c
Confidence 4566666666666665432221 22233455555555555667777888999999998863 5
Q ss_pred chHHHHHhhcccC--CChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1657 DLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1657 ~llp~L~~~L~~d--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
..++.+...+..+ ....+|..|+++|..+...+. +.+.+.++..+.+. +.++|.+++..+-.--
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-------- 588 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMRCN-------- 588 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---------
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--------
Confidence 6777777777644 356688888888876533322 23344444444443 6789988876664321
Q ss_pred HhHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGL-ADENESVRDAALGAG 1761 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L-~d~~~~VR~~a~~al 1761 (2058)
|- ..++..+...+ .+++..|+......+
T Consensus 589 P~-~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 589 PS-PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp ---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 11 12334444444 455667766555443
No 200
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=94 Score=45.54 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHh
Q 000143 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2058)
Q Consensus 1887 ~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~ 1964 (2058)
...+...+..+++..|..+.++++.++...+... ...+...+.+-+. .+++..|.+...++|.+.+..|.-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 3445566788999999999999999999988763 4555555555554 4578899999999998888776544456677
Q ss_pred hHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHhc
Q 000143 1965 ELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHAL 2012 (2058)
Q Consensus 1965 ~ll~~L~~~L~D~d~-~VR~~Aa~a~~~l~~~~g~~---~~~~ilp~Ll~~L 2012 (2058)
+-+..+.....|+.+ .|+..+..++..+....|+- +++..+--++..|
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL 1009 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL 1009 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc
Confidence 777788888888765 99999999999988776653 3444444444444
No 201
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.41 E-value=3.3 Score=47.68 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=48.8
Q ss_pred HHHhhChhhHHHhHHHHHHHHHHH-----hcCC-----CHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCC-
Q 000143 1870 TIVANTPKTLKEIMPVLMNTLISS-----LASS-----SSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDP- 1935 (2058)
Q Consensus 1870 ~lv~~~~~~l~~~l~~L~~~l~~~-----L~~~-----~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~- 1935 (2058)
.+..|..-.+.+|+.+++|.++.+ +++. .+.+|..|+..++.++..++..+ -|.+..++.+.+-|.
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 334444333445555555555543 3333 24589999999999999988653 366666666554333
Q ss_pred -ChhHHHHHHHHHH
Q 000143 1936 -SASRRQGVCIGLS 1948 (2058)
Q Consensus 1936 -~~~vR~~a~~aL~ 1948 (2058)
......|+..++.
T Consensus 342 k~~sT~YGalkgls 355 (450)
T COG5095 342 KTESTQYGALKGLS 355 (450)
T ss_pred cccchhhhhhhhhh
Confidence 2346678888776
No 202
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.37 E-value=2.3 Score=43.07 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHH
Q 000143 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~ 1972 (2058)
......|..+.++++++++..|+. +.|+++-.|...+..+ +.|..++.+...++..++.+.+.+++++++..+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 367888999999999999944433 3566766676666544 78999999999999999999899888888887776
Q ss_pred Hh
Q 000143 1973 AL 1974 (2058)
Q Consensus 1973 ~L 1974 (2058)
..
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 54
No 203
>PF05536 Neurochondrin: Neurochondrin
Probab=91.22 E-value=65 Score=42.83 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhhChhhH--hhhhhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhcc
Q 000143 1473 RTKQSSVQLLGAMAYCAPQQL--SQCLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGL 1546 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l--~~~L~~Iip~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~~~-~i--~~lvp~Ll~~l 1546 (2058)
..+..|+..|..++. ++++ .+.+-.-+|.+.+.+..... .+-..|.++|..++..-..+ .+ ...++.+.+.+
T Consensus 72 ~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHH
Confidence 345567888887775 3333 35556778888888876665 88889999999998432211 22 34667777766
Q ss_pred CCCChhHHHHHHHHHhc--ccc--c-cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC-C---CchhhhH
Q 000143 1547 TDPNDHTKYSLDILLQT--TFV--N-TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYI 1617 (2058)
Q Consensus 1547 ~d~~~~vr~al~~L~~~--~f~--~-~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~-~---~~l~pyl 1617 (2058)
.+.......++..+... ... . ......+..+++.+.+.+.......+-..+..++.+-..... + ..-..+.
T Consensus 150 ~~~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 150 PNQSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred HhCcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 65333333455544431 111 0 112233445667777777665556777888888887654310 0 1123366
Q ss_pred hhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhccc
Q 000143 1618 GLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
+.+..++..++.+ ..+.-|..+....+.+.+..|.+
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 7778888888775 46788999999999999999876
No 204
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.17 E-value=2.8 Score=50.63 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=98.2
Q ss_pred CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC---------ccchHHHHHhhcc-------cCCCh
Q 000143 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK-------SDNSN 1672 (2058)
Q Consensus 1609 ~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~---------~~~llp~L~~~L~-------~d~~~ 1672 (2058)
+...+..+.+-++|.++.+++|.++.+|..++.++..+...++... .+-+-+.+...+. .+++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 4456778899999999999999999999999999999998766443 2223333333332 12222
Q ss_pred HHHhhHHHHHHHHHHHhc---h----hHHHHhhHH-HHHhhcc----CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHH
Q 000143 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g---~----~~l~~llp~-Ll~~l~~----~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp 1740 (2058)
..-..+..++-.++.... . ..+.+++.. ++..+.. +.+.++...+..+..+...+|.....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344455555544321 1 123444433 5555543 248899999999999999999999999999999
Q ss_pred HHHHhccCCC
Q 000143 1741 AILDGLADEN 1750 (2058)
Q Consensus 1741 ~Ll~~L~d~~ 1750 (2058)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888765
No 205
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=8 Score=46.78 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---hh-hchHHHHhhhcC
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VL-PSIIPILSRGLK 1933 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---~l-~~llp~L~~~l~ 1933 (2058)
..-+..|.+-+..++++......-+--..+..++..+.+++.++|..|++.+|..++.-... ++ ...++.|...++
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 34455666666666665432221111122334445789999999999999999999764321 22 246667777676
Q ss_pred CCC-hhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhChh---hHHHHHH
Q 000143 1934 DPS-ASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVP 2006 (2058)
Q Consensus 1934 d~~-~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~D--~d~~VR~~Aa~a~~~l~~~~g~~---~~~~ilp 2006 (2058)
.++ ..+|..+.+|++.++....+.. ..|. -.=+..|++++.+ .+...+.-|..-++.+.+..... .-+...+
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 444 4577899999999998876532 2222 1125678888877 45556667777777776543211 1112233
Q ss_pred HHHHhcCC---CcchHHHHHHHHHHHhhc
Q 000143 2007 TLLHALED---DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2007 ~Ll~~L~~---~~~~~~al~aL~~i~~~~ 2032 (2058)
..+..+.+ .+.++.++.++...+...
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 33333322 234677888877766543
No 206
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=4.1 Score=49.16 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHh
Q 000143 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKG 1466 (2058)
Q Consensus 1391 ~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~ 1466 (2058)
.+...|+.|+.-+..+++.+.....=.--.-+..++..+++.+..+|..|++.++.++.+.+..+. ...++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 477889999999999988766311111112334444599999999999999999999999887542 4578888888
Q ss_pred ccCC-ChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHh
Q 000143 1467 LEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD--THPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1467 L~~~-~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D--~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..+ .-.+|..|+-+++.+....+......+ .. ...|..++++ .+.+.+..+..-++.+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 8744 456778899999999987665433321 22 4456677776 456666666666666654
No 207
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=90.84 E-value=64 Score=42.13 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-
Q 000143 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGERV- 1920 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~- 1920 (2058)
+.+...+.....|+...|..++++++..+|-.++.--..++. ..++.+.+.+.++++..|+.+.+.|-.++-...+..
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 345566666678999999999999999998765533223332 456667777899999999999999998875544332
Q ss_pred ---hhch-HHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1921 ---LPSI-IPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1921 ---l~~l-lp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
+..+ ...+....+|+++.+..++..-+..+.-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 1222 2335556789999998887776665543
No 208
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.77 E-value=2.7 Score=46.37 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=95.2
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc----cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~----~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
-++.++..+..++.+++++-|-.+..-++.+++..|.+.| ...+..++..|+..+....+..+..+++.+....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566777888889999999999999999999988776633 456666777777766666788888888888766543
Q ss_pred h----------HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1692 ~----------~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
. .+..+++.++...++ ....+.++.++..+...+...|.||..++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 234455555555544 5677788888888888888888888887776666543
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.61 E-value=1.6 Score=42.66 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
+...+..+.|+...+|..++..|..+..... ......+.++..+...+.|+++-|--+|+++|..++...++ .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHH
Confidence 3445566777778888888888888887654 23345678888899999999999999999999999987653 455
Q ss_pred HHHHhccCCC
Q 000143 1540 PTLLMGLTDP 1549 (2058)
Q Consensus 1540 p~Ll~~l~d~ 1549 (2058)
|.|++...|+
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 6666555444
No 210
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.58 E-value=24 Score=42.82 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=125.0
Q ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1420 QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
.+-..+-.|++-. -..|-..|.+.-..+.+.++++.+ ....|-++..+....-.+|..-+..+....-..+..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 4445555566543 347899999999999999998876 45567778888888888998888888877766667899
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhccCCCChhHH-HHHHHHHhc--ccc----
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQT--TFV---- 1566 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~--~f~---- 1566 (2058)
+.++.++..+...+.|.+.++...+...+..+...+++.++ +.+.-.++ ..| ..| .|+.-+... .+.
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii---~sp--~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII---TSP--SRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh---cCc--chhHHHHHHHHHhCCccccccc
Confidence 99999999999999999999999999999999998887633 44333333 222 334 344433320 111
Q ss_pred -------ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1567 -------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1567 -------~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
...-.+....++..+..+++|.+.-|++.+.+.+-.
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 001123345577778888888888888876665543
No 211
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=90.10 E-value=2.6 Score=42.54 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=64.2
Q ss_pred chHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++..+...+.|.+ +...|..++.+++.+.+..|..+..+.++++..|...+.. +..|..|.+|+..++..++.+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHH
Confidence 45555666665543 5677899999999999988877777777887777777764 569999999999999999887
Q ss_pred hHHhHHHHH
Q 000143 1455 GVKLVLPSL 1463 (2058)
Q Consensus 1455 ~v~~llp~L 1463 (2058)
.+..++...
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 765544433
No 212
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.02 E-value=24 Score=49.51 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred chHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.++.+|.+.|++.+-.+-.++|.+|..+......++-.-+-..-++.++.++...+..+-.-++.|+-.+..+-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 45667777788877778889999999988877655321222567889999999999998888888888876443
No 213
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=91 Score=42.14 Aligned_cols=366 Identities=14% Similarity=0.137 Sum_probs=195.3
Q ss_pred HhhhhHHHHHhhCCCC-----HHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC----CChHHHhhHHHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLVDPI-----PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD----NSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~-----~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d----~~~~~R~~aa~~L~~i~~ 1687 (2058)
+..++..+-+++.|.+ |..-+++.-++..+++.+|..+ ...+|.+++...+- .+...-..+...+|..+.
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHH
Confidence 4455666666666554 7778888999999999998763 34577777776432 123233445667787777
Q ss_pred Hhchh--HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC--HHHHHHHHHHHHH
Q 000143 1688 ALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESVRDAALGAGHV 1763 (2058)
Q Consensus 1688 ~~g~~--~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~--~~VR~~a~~al~~ 1763 (2058)
.+|.+ ++...+|.+++.+..+.. -..+...+..+++....++.||...++..+...+...+ +..|...+++++.
T Consensus 539 ~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGy 616 (982)
T KOG2022|consen 539 WLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGY 616 (982)
T ss_pred HHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 77765 778889999998865433 33455668899999999999999999988888776533 5678888898888
Q ss_pred HHHHhccc----ch----hchHHhHhhhc----CCCCHHHHHHHHH-HHHHHHHHhhCCccccc-ccCC-CCCCCcchHH
Q 000143 1764 LVEHYATT----SL----PLLLPAVEDGI----FNDNWRIRQSSVE-LLGDLLFKVAGTSGKAL-LEGG-SDDEGASTEA 1828 (2058)
Q Consensus 1764 lv~~~~~~----~l----~~llp~L~~~l----~d~~~~vR~sav~-ll~~Ll~~~~g~~~k~~-~~~~-~e~~~~~~e~ 1828 (2058)
++.....+ .+ ..++..++..+ .+...+.|....- ++..|... ..++.. .+.+ .+.+.....+
T Consensus 617 vls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftS---L~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 617 VLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTS---LINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred HHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---cCCCCccccccchhhhcccccc
Confidence 87766532 22 22333344332 2222233322211 22222111 111110 0000 0000000000
Q ss_pred HHHHHHHHhCh--hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhH-HHhHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1829 HGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL-KEIMPVLMNTLISSLASSSSERRQVA 1905 (2058)
Q Consensus 1829 ~~~~l~~~Lg~--~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l-~~~l~~L~~~l~~~L~~~~~~~R~~A 1905 (2058)
. .++..+.+ ..++.+++ .+....| |-.++..+++.-+.+....+ .+++|.+.+.+.+....+....-...
T Consensus 694 ~--~il~v~~k~i~~~~kv~s-~~~~~s~----vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~ 766 (982)
T KOG2022|consen 694 F--PILQVLQKAIPVFEKVLS-MWLGLSD----VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLI 766 (982)
T ss_pred C--CHHHHHHHHHHHHHHHHH-HHhcchh----HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHH
Confidence 0 11111110 11222222 1111222 33333333333333333445 88999999999886555433322222
Q ss_pred HHHHHHHHHHhCcc-----h-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---hhhHhHHhhHHHHH
Q 000143 1906 GRALGELVRKLGER-----V-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLSFMDELIPTI 1970 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~-----~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---~~l~~~~~~ll~~L 1970 (2058)
..++- ...+.. + +...+-.+.+..-.++++.-......+..++...+. .....|..-+++..
T Consensus 767 ~~~l~---~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a 843 (982)
T KOG2022|consen 767 AACLL---AKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICA 843 (982)
T ss_pred HHHHH---hhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHH
Confidence 22211 112211 1 122222222222234567777766677766665432 11233445556677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1971 RTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1971 ~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
..++..+.+..-.+|+.-+..+....+.
T Consensus 844 ~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 844 FILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 7788888887777777777777655443
No 214
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.60 E-value=3.7 Score=49.68 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=91.3
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh---H------HhHHHHHHHhcc--------CCChHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V------KLVLPSLLKGLE--------DKAWRT 1474 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~---v------~~llp~Ll~~L~--------~~~~~~ 1474 (2058)
..++.++.-++|.++..+.|.++.+|..++.++..+..+.+... + +.+-+.+...+. +++...
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45778888999999999999999999999999999998776554 2 333344444443 344444
Q ss_pred HHHHHHHHHHHHhhC---hh-hHhhhhhhHHHH-HHHHh----cCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHH
Q 000143 1475 KQSSVQLLGAMAYCA---PQ-QLSQCLPKIVPK-LTEVL----TDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTL 1542 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~---p~-~l~~~L~~Iip~-L~~~L----~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~L 1542 (2058)
=..+..++-.++... +. .-...+..++.. ++..+ +-+++.++...++.+..+...++- .+++.++|.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555554321 11 111122222211 22222 224688999999999988888774 4678999999
Q ss_pred HhccCCCC
Q 000143 1543 LMGLTDPN 1550 (2058)
Q Consensus 1543 l~~l~d~~ 1550 (2058)
.+.+.+|.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 88888874
No 215
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.46 E-value=30 Score=40.61 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhchHHhHhhhc-CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHH
Q 000143 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2058)
Q Consensus 1753 VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~ 1831 (2058)
..-+...+++.++..... .-..+++.+...+ .+.+..++..+++.+..+... +....-.+++
T Consensus 100 ~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~----------------~vvd~~s~w~ 162 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA----------------EVVDFYSAWK 162 (234)
T ss_pred HHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----------------hhccHHHHHH
Confidence 334444566666665554 3344788888888 788889999999999988521 1111334566
Q ss_pred HHHHHhChhhHHHHHH
Q 000143 1832 AIIEVLGRDKRNEVLA 1847 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~ 1847 (2058)
.+...++.+.+..++.
T Consensus 163 vl~~~l~~~~rp~v~~ 178 (234)
T PF12530_consen 163 VLQKKLSLDYRPLVLK 178 (234)
T ss_pred HHHHhcCCccchHHHH
Confidence 6666666555554443
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.40 E-value=81 Score=41.11 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-ch--------hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCCh
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP--------EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDA 1571 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~--------~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~ 1571 (2058)
..+.++|+..+-..|-+..++.+.+..... ++ .++.++..+.+.+.|..+++| .|++.+..+--.+....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 345667888888899988888888887654 23 346788888889999999998 57777665211111222
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1572 ~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
...+.+.....+.+.|++.-||+.|...+..+.
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345667888889999999999999998887764
No 217
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.24 E-value=2.1 Score=41.96 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=65.2
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhch
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~l 1776 (2058)
.+...+..++|+.+.+|..++..+..+...-. .-....+.++..++..+.|+++.|-.+|++++..++..+... +
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----v 78 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----V 78 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----H
Confidence 34456677889999999999999988877655 223467889999999999999999999999999998887665 4
Q ss_pred HHhHhhhc
Q 000143 1777 LPAVEDGI 1784 (2058)
Q Consensus 1777 lp~L~~~l 1784 (2058)
+|.|.+..
T Consensus 79 l~~L~~~y 86 (92)
T PF10363_consen 79 LPILLDEY 86 (92)
T ss_pred HHHHHHHH
Confidence 55554433
No 218
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.91 E-value=1.8 Score=47.19 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc
Q 000143 1897 SSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2058)
Q Consensus 1897 ~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~ 1975 (2058)
+.-+.|..|.+|+..+...+..+. ...++..+..+++| +.++|.-++..+..++... +..+.+.++.+++.+...+.
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~-p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA-PEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS--HHHHHHCCTTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999877664 67889999999999 8899999888888887555 55667778899999988773
No 219
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.58 E-value=15 Score=46.56 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH-------HHHHHHHHHHHHH
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK-------RREGALLAFECLC 1407 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~-------~R~~al~al~~L~ 1407 (2058)
..-|+..+.+.+..+ +...|..|.++|.. .-|. ..++|++...+.+....+ .-...+.....|.
T Consensus 205 lQlYy~~It~a~~g~-~~~~r~eAL~sL~T---DsGL-----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTGS-DEPLRQEALQSLET---DSGL-----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHhhcc---CccH-----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 445666677666664 56778888877642 2232 245677666665432222 1222233333344
Q ss_pred HHhcccchhhHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHhhhhhh--H-HhHHHHHHHhccCC--Ch
Q 000143 1408 EKLGRLFEPYVIQMLPLLLVAFS----------DQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLEDK--AW 1472 (2058)
Q Consensus 1408 ~~lg~~~~p~l~~llp~Ll~~l~----------D~~~~VR~aA~~al~~l~~~l~~~~--v-~~llp~Ll~~L~~~--~~ 1472 (2058)
+...-.++||+-+++|.++.|+- |+++.+|+-|+..+..++.+++... + .+++..+.+.+.|. .|
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44445689999999999998753 5678899999999999999887632 3 56777777777654 68
Q ss_pred HHHHHHHHHHHHHHhh
Q 000143 1473 RTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~ 1488 (2058)
...++++..|..+...
T Consensus 356 st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 356 STHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhHHHHHHHhhhh
Confidence 9999999888887753
No 220
>PF05536 Neurochondrin: Neurochondrin
Probab=88.52 E-value=1e+02 Score=41.06 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=81.7
Q ss_pred hhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
-.-+|.+...+...+. .+-..+.+++..++. .++.....+ ...++.|.+.+.+ .+...+.+...+..+....+.
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias---~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIAS---SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc---CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 3345666665554443 555666666666653 112212221 2345555555554 556677888888887776663
Q ss_pred cC-------ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc---------hhHHHHhhHHHHHhhccC-ChhHHHH
Q 000143 1653 EN-------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG---------TVYFEHILPDIIRNCSHQ-RASVRDG 1715 (2058)
Q Consensus 1653 ~~-------~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g---------~~~l~~llp~Ll~~l~~~-~~~vR~~ 1715 (2058)
+. +..+++.+-..+....+. .+...+.-|+.+....+ ......+...+...+++. .+.-|..
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~-~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGE-DKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 31 223444443333322222 34445555555554442 113345555555555553 7788888
Q ss_pred HHHHHHHhHHHhchh
Q 000143 1716 YLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1716 al~~l~~la~~~g~~ 1730 (2058)
++.+...+...+|.+
T Consensus 252 al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 252 ALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhChH
Confidence 888888888887764
No 221
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.15 E-value=2.4 Score=52.62 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=87.4
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC-------ChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-------AWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~-------~~~~R~~a~~~Lg~la 1486 (2058)
..-|+..+...+. +++...|..|...|. ...++..++|.+...+.+. ++..-...+..+.++.
T Consensus 176 lq~yf~~It~a~~----~~~~~~r~~aL~sL~------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 176 LQLYFEEITEALV----GSNEEKRREALQSLR------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHhc------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 3445555544443 356777877766554 2345667777777766432 4544444556666666
Q ss_pred hhChhhHhhhhhhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhcCchh--H-HhHHHHHHhccCCCCh
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVL----------TDTHPKVQSAGQTALQQVGSVIKNPE--I-ASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L----------~D~~~~VR~aA~~aL~~l~~~~~~~~--i-~~lvp~Ll~~l~d~~~ 1551 (2058)
....-.+.+|+..++|.++.++ .+.|+.+|..|+..|+.++..+++.+ + ..+...+.+.+.||..
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK 323 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 5555568899999999998877 35678999999999999999887543 3 5666677777777754
No 222
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.91 E-value=4.7 Score=43.32 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---------------hhhHhHHhh
Q 000143 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------SQLLSFMDE 1965 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---------------~~l~~~~~~ 1965 (2058)
+|...+.+++.++.+-.+...+++++.+.+.+++ ++.........|..+.+.... +.+....+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~ 82 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPD 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHH
Confidence 4555667777777776555566666666666554 344443433333322222210 123334466
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHhcCCCcchHHHHHHH
Q 000143 1966 LIPTIRTALCDSI----LEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTALDGL 2025 (2058)
Q Consensus 1966 ll~~L~~~L~D~d----~~VR~~Aa~a~~~l~~~~g~~~~--~~ilp~Ll~~L~~~~~~~~al~aL 2025 (2058)
+++.+.+.+.... .++...+..+++.+........+ ..+++.+++.|.+++.++.|+++|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 6666666664332 78889999999988775554333 258999999999888888888875
No 223
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=87.84 E-value=8.4 Score=43.70 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=86.7
Q ss_pred HHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHH
Q 000143 1865 LHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVC 1944 (2058)
Q Consensus 1865 ~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~ 1944 (2058)
..++..+....++...+++..++..+.+.-.+++...|..+-.|+|..++.+|.+.+=+++|.-... .+.....|.-..
T Consensus 21 l~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~raWLL 99 (198)
T PF08161_consen 21 LNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRAWLL 99 (198)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccchhH
Confidence 3344444444454445666667777766677788899999999999999999988665666642221 122222333222
Q ss_pred HHHHHHHHhhChhhhHhHHhhHHHHHHHHh---cC----CCHHHHHHHHHHHHHHHHHhCh---------hhHHHHHHHH
Q 000143 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTAL---CD----SILEVRESAGLAFSTLFKSAGM---------QAIDEIVPTL 2008 (2058)
Q Consensus 1945 ~aL~eii~~~~~~~l~~~~~~ll~~L~~~L---~D----~d~~VR~~Aa~a~~~l~~~~g~---------~~~~~ilp~L 2008 (2058)
=-|.+-+. ...+.-|.+.++|.....- .+ .+..-..........+|...+. ..+.++-..|
T Consensus 100 PlLr~~i~---~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L 176 (198)
T PF08161_consen 100 PLLRDHIR---NASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLL 176 (198)
T ss_pred HHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHH
Confidence 22333222 2234445566666555421 11 1111111111223444443321 2334555556
Q ss_pred HHhcCC-CcchHHHHHHHHHHH
Q 000143 2009 LHALED-DQTSDTALDGLKQIL 2029 (2058)
Q Consensus 2009 l~~L~~-~~~~~~al~aL~~i~ 2029 (2058)
.+.|.+ ++-|..++.||+.++
T Consensus 177 ~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 177 GNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred HHHHhcCcchHHHHHHHHHHHC
Confidence 666665 556788888887653
No 224
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.83 E-value=1.3e+02 Score=41.39 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=66.0
Q ss_pred hHHHHhhhcCCCChhHHHHHHHHHHHHH--HhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh---
Q 000143 1924 IIPILSRGLKDPSASRRQGVCIGLSEVM--ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--- 1998 (2058)
Q Consensus 1924 llp~L~~~l~d~~~~vR~~a~~aL~eii--~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~--- 1998 (2058)
++..-...+++++-..|..+...|...+ -..-++.+-|.+.+..|.+...+.+.|+-+-+.|..++-.+..+.|+
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333445567777777877766554322 12224556777788888899999999999999999999999999885
Q ss_pred -hhHHHHHHHHHHhcC
Q 000143 1999 -QAIDEIVPTLLHALE 2013 (2058)
Q Consensus 1999 -~~~~~ilp~Ll~~L~ 2013 (2058)
+.+.+++|.+...+.
T Consensus 884 sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567788888876554
No 225
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=2.4e+02 Score=44.43 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHh----hhCCC--CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCS----LVTEP--KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~----~l~~~--~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
.++.+...+...+..++.....++..+-. .++++ ....|..+.+++.+..++.|+.|.-|.....+|+.+.+.+
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 45555556665556666665555544432 23322 2346777889999999999999999999999999888877
Q ss_pred ccc----CccchHHHHHhhcccCCChHHHh----hHHHHHHHHHHHhc---------hhHHHHhhHHHHHhhccCChhHH
Q 000143 1651 GEE----NFPDLVSWLLDALKSDNSNVERS----GAAQGLSEVLAALG---------TVYFEHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1651 g~~----~~~~llp~L~~~L~~d~~~~~R~----~aa~~L~~i~~~~g---------~~~l~~llp~Ll~~l~~~~~~vR 1713 (2058)
... +..+++..++..++. ...++-. .+-..+-.+.+.+- ......++..+...+.+++..||
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d-~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKD-TESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcC-CccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 643 223455555555542 1111111 12222222222221 11235566777788889999999
Q ss_pred HHHHHHHHHhHHHhchhHHHhH
Q 000143 1714 DGYLTLFKYLPRSLGVQFQNYL 1735 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g~~f~pyl 1735 (2058)
+.+..++..+....|......+
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~ 1165 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLL 1165 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999998876544333
No 226
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=1.1e+02 Score=40.04 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=49.0
Q ss_pred HhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1915 KLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1915 ~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
.+|+++ ..-.+-.+...+.=..+.+|..+=.|++ ++.-..|+ -.++.+|.+...|.|.+|--+|..++|-+.
T Consensus 631 AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~-llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 631 AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALG-LLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 345553 2233444445555557889998888888 33333232 357888999999999999999999998764
No 227
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.13 E-value=1e+02 Score=39.45 Aligned_cols=286 Identities=14% Similarity=0.100 Sum_probs=133.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhh--HhhhhhhH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKI 1500 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~--l~~~L~~I 1500 (2058)
.+..++..+...|...+..++..-+.. ....++..+.+.+... +.+....++..+..+....+-. +.. ...
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~ 186 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADG 186 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccC
Confidence 445667888898888888887532221 1123344444455433 3556666778888877654322 111 124
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhcC-chhH--HhHHHHHHhccCCCC--hhHHHHHHHHHhcccccc---CC
Q 000143 1501 VPKLTEVLTDT--HPKVQSAGQTALQQVGSVIK-NPEI--ASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNT---VD 1570 (2058)
Q Consensus 1501 ip~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~-~~~i--~~lvp~Ll~~l~d~~--~~vr~al~~L~~~~f~~~---~~ 1570 (2058)
++.|...++.. .......++-|+=.+.-.-. .+.. ..++|.+.+.+.+.. +.+|-++.++-..--... ..
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 45555555432 23445554444322221100 0111 457777777776653 345755555443100000 00
Q ss_pred hhhH----h-hHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1571 APSL----A-LLVPIVHRGLRE---RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1571 ~~~l----~-~llp~L~~~L~d---~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.... . .+.+.+ ..|.. .++++.......-..+-+.+..-..+..|...+..+-+.= .|--+. -..
T Consensus 267 ~~~~~~mv~~~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W----Sp~H~s--e~F 339 (429)
T cd00256 267 KTAALQMVQCKVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW----SPVHKS--EKF 339 (429)
T ss_pred hhHHHHHHHcChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC----CCCCCC--chH
Confidence 0000 0 122222 22222 2233332222222222222222223444544433322210 010000 011
Q ss_pred HHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh--chhHHHH--hhHHHHHhhccCChhHHHHHHH
Q 000143 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEH--ILPDIIRNCSHQRASVRDGYLT 1718 (2058)
Q Consensus 1643 Lg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~--g~~~l~~--llp~Ll~~l~~~~~~vR~~al~ 1718 (2058)
+..=+..+.++. -+++..|.+.|....++..-..|+.-+|++++.. |...+++ .=..+++.+.++++.||..++.
T Consensus 340 W~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 340 WRENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 111222232322 2466777777754334434556777889998886 4433332 2345778888999999999999
Q ss_pred HHHHh
Q 000143 1719 LFKYL 1723 (2058)
Q Consensus 1719 ~l~~l 1723 (2058)
++..+
T Consensus 419 avQkl 423 (429)
T cd00256 419 AVQKL 423 (429)
T ss_pred HHHHH
Confidence 88765
No 228
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.73 E-value=9.5 Score=38.54 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=67.3
Q ss_pred HHhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1880 KEIMPVLMNTLISSLASS----SSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~----~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
++++=.++..+-..+.|. ....|..+.++++.+++.+|.. +.|++.-.|...++ .++.|..++.+...++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHH
Confidence 334434444444444443 4567889999999999977744 36777777777775 45689999999999999
Q ss_pred hhChhhhHhHHhhHHHHHHHHh
Q 000143 1953 SAGKSQLLSFMDELIPTIRTAL 1974 (2058)
Q Consensus 1953 ~~~~~~l~~~~~~ll~~L~~~L 1974 (2058)
.++.+.+.+.+++++..+....
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHhc
Confidence 9998888888787777776543
No 229
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.39 E-value=52 Score=38.60 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1422 LPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+|.++. .-+..++.+.....+++..++.+-. .....++..+......+.-..+..+..++..+....+..+ +++..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~ 79 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPL 79 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence 344444 4556678888888888888775543 3334444444444455555555566677777666554333 333333
Q ss_pred HHH-HHH---Hh--cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCChhHH-HHHHHHHhccccccCChh
Q 000143 1501 VPK-LTE---VL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2058)
Q Consensus 1501 ip~-L~~---~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~vr-~al~~L~~~~f~~~~~~~ 1572 (2058)
+.. ..+ .. .+...++..+...++..++...++ .-.++++.+...+ .+.++.++ -+++.+...--..-++
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-- 156 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-- 156 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc--
Confidence 222 111 11 233466666767788888887655 5567888888888 45555554 2444433200000001
Q ss_pred hHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCC
Q 000143 1573 SLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 1632 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~ 1632 (2058)
.......+.+.+. +..+.+-+..+..+..+...-.+.+....+...++..+-+.....+
T Consensus 157 -~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 157 -FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred -HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 1112233333332 3345555544444444433222333334445556666666655544
No 230
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=85.04 E-value=1.6e+02 Score=39.73 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=91.8
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-------~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~ 1450 (2058)
.++..-...+...++..+-+++.-++..++-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 34333233444445677777777777777655442 333433 3568899999988899988888899888766
Q ss_pred hhhhhH--HhHHHHHHHhccCC------ChHHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHHhc-CCCHHHHHHHH
Q 000143 1451 LSAQGV--KLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT-DTHPKVQSAGQ 1520 (2058)
Q Consensus 1451 l~~~~v--~~llp~Ll~~L~~~------~~~~R~~a~~~Lg~la~~~p~~l~~~L~-~Iip~L~~~L~-D~~~~VR~aA~ 1520 (2058)
.....+ +..+|.|...|.+. +|.+-..+|..|-.|....+..-...+. .=++.|+.... -.++++-++|+
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 555443 67889999988643 4677777777777777543332221110 12333333333 23467777777
Q ss_pred HHHHHHH
Q 000143 1521 TALQQVG 1527 (2058)
Q Consensus 1521 ~aL~~l~ 1527 (2058)
.-|..+-
T Consensus 677 ~vL~~lW 683 (717)
T KOG1048|consen 677 SVLDVLW 683 (717)
T ss_pred HHHHHHH
Confidence 7666654
No 231
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.96 E-value=1.2e+02 Score=37.56 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=89.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccc---hhhH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEK-LGRLF---EPYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~~---~p~l----~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
+++..|...+..- +.+.|..+...+..+... .+..+ ..|+ .+++..++.+.++++... .+..-++.+++
T Consensus 76 dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIK 152 (335)
T ss_dssp THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTT
T ss_pred CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHh
Confidence 4555566655544 678888888877777654 33323 2243 467888888888765321 22222222221
Q ss_pred hhh--hhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1450 QLS--AQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2058)
Q Consensus 1450 ~l~--~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p----~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~a 1522 (2058)
.-. ...+ ...+-.+++.++.++..+-..|...+..+...-+ +.+..+....+....+++..++--+|..+.+-
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 100 0000 2233446677778888888888887777665433 33556677888888888999999999998888
Q ss_pred HHHHHh
Q 000143 1523 LQQVGS 1528 (2058)
Q Consensus 1523 L~~l~~ 1528 (2058)
|+.+..
T Consensus 233 L~elll 238 (335)
T PF08569_consen 233 LGELLL 238 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888864
No 232
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.56 E-value=50 Score=40.37 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
....++.|.+.++.+..+.|.-- ...+..-+.++.|.+..||.+|+..|..||..
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la----~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLA----DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhh----hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 34566677788888777666432 23445556678888899999999999888874
No 233
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=82.54 E-value=1.6e+02 Score=42.24 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHhhHHHHHHHHHHHhchh----H---HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1673 VERSGAAQGLSEVLAALGTV----Y---FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~----~---l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
..|..+..+|..+- +|.. + .+.+|..+...+.+....+.+.+...|.+|......
T Consensus 366 aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~ 427 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS 427 (2195)
T ss_pred HHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc
Confidence 35666666665442 2221 1 245676777766666556666666666666654433
No 234
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=82.50 E-value=32 Score=39.05 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-
Q 000143 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY- 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~- 1555 (2058)
..+..++.+....+....+.+..++..+.++-.+.+...|+++-.+++.....++.+.+=.++|.-+.. .+.....|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~raW 97 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRAW 97 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccch
Confidence 345666666666555556677788888888888877889999999999999999876665666644332 111111121
Q ss_pred HHHHHHhcccccc-CChhhHhhHHHHHHHhh----c----CCCHHHH---HHHHHHHHHHHhhhCCCCchhhhHhhhhHH
Q 000143 1556 SLDILLQTTFVNT-VDAPSLALLVPIVHRGL----R----ERSAETK---KKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2058)
Q Consensus 1556 al~~L~~~~f~~~-~~~~~l~~llp~L~~~L----~----d~s~~vr---~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~ 1623 (2058)
-+-.+-+ ++.. .-.-....++|.....- + .++.+.| .-..++++.+-.....|.|+...++.+-+.
T Consensus 98 LLPlLr~--~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~ 175 (198)
T PF08161_consen 98 LLPLLRD--HIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKL 175 (198)
T ss_pred hHHHHHH--hccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHH
Confidence 1111111 0000 00012234555444321 1 1111222 223344444444444556665555666666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
|.+++.|. +++|....++|-.+
T Consensus 176 L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 176 LGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHhcC-cchHHHHHHHHHHH
Confidence 66666553 56676666666543
No 235
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=89 Score=37.28 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
.+.+++.+.+|.||++|...+-.+... +- .+-...++.+.+.+.++.. .+.|..+++...-.......-++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877666543 21 1234567778888877765 33344444331100000001112233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
..+...+.|+.+..-...|..+.|+++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 333344455545555667777777765
No 236
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=81.89 E-value=1.9e+02 Score=38.48 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhh
Q 000143 1880 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l 1959 (2058)
...+..++..+... ...+..|...-.++++++..+|++++|.+=..+...++|.++..-.+...-+..++.... ...
T Consensus 694 ~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk-~~~ 770 (980)
T KOG2021|consen 694 SNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFK-TDC 770 (980)
T ss_pred HHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444444443322 235678988889999999999999888776666777888887766666666777776554 345
Q ss_pred HhHHhhHHHHHHHH
Q 000143 1960 LSFMDELIPTIRTA 1973 (2058)
Q Consensus 1960 ~~~~~~ll~~L~~~ 1973 (2058)
.+.+.+++|++...
T Consensus 771 ~~ilnqmlppll~r 784 (980)
T KOG2021|consen 771 YQILNQMLPPLLNR 784 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777766654
No 237
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=80.98 E-value=2e+02 Score=37.98 Aligned_cols=243 Identities=17% Similarity=0.138 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhHhcc-----C-C----cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAK-----D-D----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVS 1340 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~-----~-~----p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~ 1340 (2058)
.+|.-.+.+|..++..+.+ + + .+++.+++-+...+++.+..++-.++..+.......+... -++++
T Consensus 211 ~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~ 290 (993)
T COG5234 211 ALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIE 290 (993)
T ss_pred HHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHH
Confidence 4555555556665543322 1 1 2456677777777888888898878776666555543322 22222
Q ss_pred HHHHH-----HhcC-----CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhC-------CCCHHHHHHHHHHH
Q 000143 1341 RLLDQ-----LMKS-----DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-------RNSAKRREGALLAF 1403 (2058)
Q Consensus 1341 ~Ll~~-----L~~~-----~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~-------~~~~~~R~~al~al 1403 (2058)
-..+. +.+. .++-+..++..-++ ++...|.+... --+.+.+...+.- -+...+|+.+++.+
T Consensus 291 ~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d-~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~v 368 (993)
T COG5234 291 LMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSD-CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFV 368 (993)
T ss_pred hcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhh-hhhhhheccccceeehheeeeccceeecccceee
Confidence 22222 1110 13445555555444 44333333321 1144444443321 12345788888777
Q ss_pred HHHHHHhcccchhhHHHHHHH-HHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChH--HHHHH
Q 000143 1404 ECLCEKLGRLFEPYVIQMLPL-LLV-AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWR--TKQSS 1478 (2058)
Q Consensus 1404 ~~L~~~lg~~~~p~l~~llp~-Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~--~R~~a 1478 (2058)
..+.......+.+-+...+-+ ++. .+-|++-.||.+|..++-.......+... ...+. ++ +|. .|...
T Consensus 369 Ws~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIs-lI------N~~sv~r~s~ 441 (993)
T COG5234 369 WSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLIS-LI------NYVSVTRISN 441 (993)
T ss_pred eeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhh-hc------cceecchhhh
Confidence 777665444444444444433 333 78899999999998888776654222111 11111 11 332 12221
Q ss_pred H-HHHHHHHhhChhhHhhhhhhHHHH-HHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1479 V-QLLGAMAYCAPQQLSQCLPKIVPK-LTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1479 ~-~~Lg~la~~~p~~l~~~L~~Iip~-L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
| ..+.....+.| ....+. +++.. |.+-|.+-+++|+.....+|.++.+
T Consensus 442 csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 442 CSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred cchHHHHHhcCcc-ccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence 1 12222222222 222221 22222 4555566678888888888888854
No 238
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=80.95 E-value=19 Score=38.57 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc----------------chh
Q 000143 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FEP 1416 (2058)
Q Consensus 1353 ~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~----------------~~p 1416 (2058)
.+|...+.+++.++....+..++ ++++.+.+.+.+ ++...+..+..+..+.+.+.+. +..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 46777888888888877666654 678888877765 4677788888888888766420 111
Q ss_pred hHHHHHHHHHHHcCCC---C-HHHHHHHHHHHHHHHHhhhhhhH--HhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1417 YVIQMLPLLLVAFSDQ---V-VAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~---~-~~VR~aA~~al~~l~~~l~~~~v--~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
....++..+...+... . ..+...+.++++..+...+.+.+ ..+++.+++.+.+++- +..|++.
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 2233444444444332 2 77888888898888876665554 3578888888865544 5555554
No 239
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=80.72 E-value=1.4e+02 Score=38.76 Aligned_cols=233 Identities=15% Similarity=0.040 Sum_probs=114.9
Q ss_pred chhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCcc--c--hhhHHHHHHHHhccc
Q 000143 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD--N--VSLLFPIFENYLNKK 1266 (2058)
Q Consensus 1191 ~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~--~--~~~Ll~~l~~~L~~~ 1266 (2058)
+..|..++.+||.+..++..+....++.-++..+|.++...-|..+.-...+........ . ...+.+.+...|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 468999999999999999777777777643347888887777766655555554433221 1 245556666666632
Q ss_pred CC--Chh---HHHHHHHHHHHHHHHHHhH--hccCC-cchHHHHHHHHhhhC--CCC----HHHHHHHHHhhHhhHhhcc
Q 000143 1267 AS--DEE---KYDLVREGVVIFTGALAKH--LAKDD-PKVHAVVDKLLDVLN--TPS----EAVQRAVSSCLSPLMQSMQ 1332 (2058)
Q Consensus 1267 ~~--~~e---~~~~vR~~av~~Lg~La~~--l~~~~-p~i~~iv~~Ll~~L~--~~~----~~V~~av~~~L~~l~~~~~ 1332 (2058)
.. =.| ....+|..+-.++..+..+ ++... |.+..++ +.-. .|+ +.....+..+...+...++
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v----~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVV----QGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhcccccccc----ccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 10 011 1223444444455554432 11110 1111111 1000 111 1122222222222322221
Q ss_pred cc--------hH---HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1333 DE--------AP---TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1333 ~~--------~~---~~v~~Ll~~L~~-~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
.. +. .-+...++.... .....+|..|+.+-+.+.-+.=++.+ .+++.-|.+.++.+.+...+..+.
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KL--nPiIrpLMdSIK~Een~~LQ~rsA 334 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKL--NPIIRPLMDSIKREENELLQQRSA 334 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--cHHHHHHHHHhhccccHHHHHHHH
Confidence 11 11 111111111111 12345566666555544433223333 378888888888888888777777
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1401 LAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1401 ~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
.++..+.+.+...-..-.+.|+..|...+
T Consensus 335 ~slA~Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 335 ESLARLIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHhhhh
Confidence 77777776654211222345666666554
No 240
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=1.9e+02 Score=37.37 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-----h---hhHHHhHHHHHHHHHHHhcCCC------------HHH
Q 000143 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SER 1901 (2058)
Q Consensus 1842 ~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~-----~---~~l~~~l~~L~~~l~~~L~~~~------------~~~ 1901 (2058)
+-..+..+..+.......|-.+....|-.+.... . .-+++|...++..+....+-+. .+.
T Consensus 289 ~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 289 FLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEF 368 (559)
T ss_pred chhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHH
Confidence 3345555666655555677777777776665321 1 2467888888888887655332 356
Q ss_pred HHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC--CC
Q 000143 1902 RQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--SI 1978 (2058)
Q Consensus 1902 R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D--~d 1978 (2058)
|....+.+.+++--.|.+ .+.++.-.+.. +..+.+.-+++...+..++...+++. .+++|.+.+.+.+ .-
T Consensus 369 R~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q 441 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQ 441 (559)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccc
Confidence 788888888888888865 45555444443 34455677788888888887776543 6788888887653 23
Q ss_pred HHHHHHHHHHHHHHHHHhCh-h-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 000143 1979 LEVRESAGLAFSTLFKSAGM-Q-AIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2058)
Q Consensus 1979 ~~VR~~Aa~a~~~l~~~~g~-~-~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~ 2030 (2058)
..+|..+..-+|.+.+.+.. + -++-++..+...+....-...+-.++..++.
T Consensus 442 ~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 442 APLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICS 495 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 34999999999999877653 2 3344455555555543322333333444443
No 241
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=79.91 E-value=2.3e+02 Score=38.16 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc--hhhchHHHHhhhcCCC------ChhHHHHHHHHHHHHHHhhChhh
Q 000143 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKDP------SASRRQGVCIGLSEVMASAGKSQ 1958 (2058)
Q Consensus 1887 ~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~--~l~~llp~L~~~l~d~------~~~vR~~a~~aL~eii~~~~~~~ 1958 (2058)
++.++..+..++..+-..++..|..+....--. +-...+|-|.+.+-+. +.++-..+|..+.+++..... .
T Consensus 568 l~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~-n 646 (717)
T KOG1048|consen 568 LPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVL-N 646 (717)
T ss_pred ccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHH-H
Confidence 344555678888888888888888887643211 2245666666666432 346677889999999854322 1
Q ss_pred hHhHH-hhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Q 000143 1959 LLSFM-DELIPTIRTAL-CDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1959 l~~~~-~~ll~~L~~~L-~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
-.+++ ..=++.++... .-.++.+-++|..-+..+|.+-
T Consensus 647 Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 647 AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 22222 23345555433 3456788888989999998764
No 242
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=79.75 E-value=2.2e+02 Score=37.66 Aligned_cols=117 Identities=26% Similarity=0.374 Sum_probs=70.5
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccch-hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC
Q 000143 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2058)
Q Consensus 1216 l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~-~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~ 1294 (2058)
++..++..++-|++-.||+.+..+..+++..+....+ .+++..+ ++... .| --.+-|.+++.+.+.
T Consensus 387 L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N~~sv----------~r--~s~csg~~~r~~~~~ 453 (993)
T COG5234 387 LIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-NYVSV----------TR--ISNCSGDLCRKVAHF 453 (993)
T ss_pred HHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-cceec----------ch--hhhcchHHHHHhcCc
Confidence 4444455688899999999999999999887543322 2233322 22111 01 223445555443322
Q ss_pred Ccch---HHHHHH-HHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHh
Q 000143 1295 DPKV---HAVVDK-LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347 (2058)
Q Consensus 1295 ~p~i---~~iv~~-Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~ 1347 (2058)
|++ .++++. |+.-|.+-+..++...+-|+.++++. +...+-+++.+++.+.
T Consensus 454 -~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~-~~~~p~yl~~Il~k~~ 508 (993)
T COG5234 454 -PKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY-PKELPIYLPPILDKLS 508 (993)
T ss_pred -cccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcC-cccCchhhhHHhhhCc
Confidence 222 234444 77777777888888888889888654 3345667777776654
No 243
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.67 E-value=81 Score=38.86 Aligned_cols=151 Identities=21% Similarity=0.169 Sum_probs=84.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-H---HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L---KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER- 1919 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~-l---~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~- 1919 (2058)
.+..++......+..+...|..++..+....+.. . .+.++.+++.+...+.+++.+.+..++.+++.+.+.=.-+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 3445555545556788888888888887644322 2 3677777777766666666777899999999998542221
Q ss_pred -h-hhchHHHHhhhc-----CCC--ChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhcC-CCHHHHHHHHHH
Q 000143 1920 -V-LPSIIPILSRGL-----KDP--SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLA 1988 (2058)
Q Consensus 1920 -~-l~~llp~L~~~l-----~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~D-~d~~VR~~Aa~a 1988 (2058)
+ -...++.+.+.+ .+. .......++.++ |+-+..++...... ..+++.+.+.+.+ ..+.|-+.+..+
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l--WlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL--WLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHH--HHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH--HHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 1 134444444444 122 234445565555 44445444333322 3478888887754 455677777777
Q ss_pred HHHHHHHhC
Q 000143 1989 FSTLFKSAG 1997 (2058)
Q Consensus 1989 ~~~l~~~~g 1997 (2058)
|-.+.....
T Consensus 264 l~Nl~~~~~ 272 (312)
T PF03224_consen 264 LRNLLSKAP 272 (312)
T ss_dssp HHHTTSSSS
T ss_pred HHHHHhccH
Confidence 777765433
No 244
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=79.59 E-value=1.6e+02 Score=37.16 Aligned_cols=116 Identities=21% Similarity=0.309 Sum_probs=77.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhhh-H-HhHHH-HHHHhcc--CCChHHHHHHHHHHHHHHhh--ChhhHhhhhhhH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-V-KLVLP-SLLKGLE--DKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKI 1500 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~~-v-~~llp-~Ll~~L~--~~~~~~R~~a~~~Lg~la~~--~p~~l~~~L~~I 1500 (2058)
.+.|+ ..||.++.+.++.+......-. + +.-++ .+...+. .++--.|..|+.++..+.+. .++.+. ..+
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~v 109 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGV 109 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHH
Confidence 45554 9999999999998875543211 1 11122 2333443 23456899999999999877 444443 367
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH---HhHHHHHHhccCCC
Q 000143 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1501 ip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i---~~lvp~Ll~~l~d~ 1549 (2058)
+..++.+..+++...|..|..+|..++- .+|++ ..-+..+.+.+.|+
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhc
Confidence 7888888888889999999999999874 35543 23345555555554
No 245
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.20 E-value=3.3 Score=33.75 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
..+|.|+.++.+.++.|++.|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999986
No 246
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=79.02 E-value=2.6e+02 Score=38.26 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=71.2
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhh-hhcCC-CchHHHHHH--------HHHHhh-cCCCCC-
Q 000143 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEAA--------EDIWDR-YGYDFG- 1129 (2058)
Q Consensus 1062 ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~-~a~~d-~~~~~r~~a--------~~~w~~-~~~~~~- 1129 (2058)
.++..+++++..+..|++.|+..... ..|...+. +...+ .+-..|..| ...|.+ ++....
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~q--------~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEKQ--------HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhcc--------ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 45677899999999999999987522 12222221 12222 234455444 347976 333222
Q ss_pred ---CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHH
Q 000143 1130 ---TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYI 1177 (2058)
Q Consensus 1130 ---~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~ 1177 (2058)
..+ ..++..+.+.+....-+.+.|++.++. .+|+.|+.+++.|....+
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls 133 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLS 133 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhc
Confidence 123 778887777777777788999999986 468999999888887654
No 247
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.84 E-value=27 Score=43.65 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=63.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHH----hhChhhhHhHHhhHHHHH
Q 000143 1895 ASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQLLSFMDELIPTI 1970 (2058)
Q Consensus 1895 ~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~----~~~~~~l~~~~~~ll~~L 1970 (2058)
++.++.....+..+++.-+..++...-+.++..+.+++++..+.+|..-+.++++++. ........++++.++..+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 4568888899999999888888667778999999999999988899999999998886 222233444555555555
Q ss_pred HHHhcCCCHH
Q 000143 1971 RTALCDSILE 1980 (2058)
Q Consensus 1971 ~~~L~D~d~~ 1980 (2058)
.+....+-+.
T Consensus 113 ~~~~~~p~~~ 122 (339)
T PF12074_consen 113 KEASANPLQS 122 (339)
T ss_pred HHHHhCCCCc
Confidence 5555555444
No 248
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.80 E-value=46 Score=41.10 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHhc
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGL 1467 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~L 1467 (2058)
+..+|..|+..+-.+...-......+...+++.+....-|++..||.+..+.+..++....++.+ ..++|.+..++
T Consensus 71 NakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AM 150 (393)
T KOG2149|consen 71 NAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAM 150 (393)
T ss_pred hHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHH
Confidence 78899999888877766533344556667888888899999999999999999998766666553 45666777778
Q ss_pred cCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1468 ~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
......+|..+...+.-++..+|+.+..+...+++.+...+
T Consensus 151 Thit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 151 THITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred hhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999888776665555555544443
No 249
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=19 Score=44.24 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=94.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHH
Q 000143 1894 LASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2058)
Q Consensus 1894 L~~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L 1970 (2058)
+..-+..+|+.|...+-++....... .+..+++.+.....|++..+|......+..++....++...++..-+++-+
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 58889999999999999999873322 245667777777889999999999988888787777777888888899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhChhh---HHHHHHHHHHhc
Q 000143 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHAL 2012 (2058)
Q Consensus 1971 ~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~---~~~ilp~Ll~~L 2012 (2058)
..++...-+++|.-+..-+..+....++.. ...+++.+...+
T Consensus 147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887532 223444444433
No 250
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=78.44 E-value=17 Score=38.88 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=53.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
.+-..+..+|.++++.|++.|.+|+-.. ++|++...-+.|...++|. ..|+.+..+....-...++..+...++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~----k~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTW----KDPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 4445567889999999999999999875 3456655556666666653 345444444322222225566777899
Q ss_pred HHHHHhh
Q 000143 1579 PIVHRGL 1585 (2058)
Q Consensus 1579 p~L~~~L 1585 (2058)
|++.+.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 9988866
No 251
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.32 E-value=1.6e+02 Score=35.24 Aligned_cols=167 Identities=18% Similarity=0.180 Sum_probs=85.6
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC-----C-CchhhhHhhhhHHHHHhhCCCC-----HHHHHHHHHHH
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-----P-KDMIPYIGLLLPEVKKVLVDPI-----PEVRSVAARAI 1643 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~-----~-~~l~pyl~~ll~~L~~~l~d~~-----~~vR~~a~~aL 1643 (2058)
..+.+.+.+|+.... .-..+.+++..+.....+ . ..+.-.+-..+|.+...+.++. +.++ .++.+|
T Consensus 63 ~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~~L 139 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAEAL 139 (262)
T ss_pred hhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHHHH
Confidence 347777888886643 334455666666654221 1 1111122345677777777666 3343 455777
Q ss_pred HHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHh
Q 000143 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2058)
Q Consensus 1644 g~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~l 1723 (2058)
+.+++.-|...+..++..+...=. ........+....+.+.+.+++--+++-.++..+.+.-+.+|...+.++..+
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~f----r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~l 215 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRF----RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVL 215 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 777755444333333332221111 1011222333344444444444445555666666666667777777777666
Q ss_pred HHHhchhHHHhHHHHHHHHHHhccCC
Q 000143 1724 PRSLGVQFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1724 a~~~g~~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
-....-. .|+.++++.++++.+..+
T Consensus 216 l~~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 216 LPHVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred hccccCC-CCcchHHHHHHHHHhCCc
Confidence 5544332 235555666666666554
No 252
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=76.10 E-value=2.7e+02 Score=36.90 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=61.3
Q ss_pred ccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
|.+..+...+..++-.+...+. ++...+|-..++.++.+++....+.+-.+-.+.+-..+-.++.|.+|-++..|.+|+
T Consensus 468 ~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF 547 (559)
T PF14868_consen 468 FIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAF 547 (559)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3444555556666666666663 444568888999999998864333333355666666666778999999999999999
Q ss_pred HHHHHhh
Q 000143 1644 GSLIRGM 1650 (2058)
Q Consensus 1644 g~l~~~l 1650 (2058)
|.+++.-
T Consensus 548 ~~FAe~T 554 (559)
T PF14868_consen 548 GQFAERT 554 (559)
T ss_pred HHHhccC
Confidence 9999743
No 253
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.09 E-value=9.1 Score=39.21 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=44.1
Q ss_pred hHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1924 IIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1924 llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
++..|.+.+. +.++.+-..+|.=+|+++...+.. ...+ -..-..++.++.++|++||..|..|+..+.-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444444452 335666667788888888776431 1122 2345678888999999999999999988753
No 254
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.03 E-value=2.5e+02 Score=35.99 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-hhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HHHHHhC
Q 000143 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG-----ELVRKLG 1917 (2058)
Q Consensus 1844 ~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~-~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg-----~L~~~lg 1917 (2058)
.++..++....-++..-.-..+..+..+.... +..+..+...++..+.+++.+++..+-..|...+. .++....
T Consensus 255 ~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 255 PVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 34444444433332222223445555665544 46788899999999999999999998777765443 2222222
Q ss_pred cchhhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhh
Q 000143 1918 ERVLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQL 1959 (2058)
Q Consensus 1918 ~~~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l 1959 (2058)
..++|-+.|.+.+..+.- +..+|..++.++. ++..++++.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~-~l~~~d~~lf 376 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLK-ILMEMDPKLF 376 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHH-HHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHhCHHHH
Confidence 234566666665544433 4678888888776 5555655433
No 255
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=74.76 E-value=2.2e+02 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcC
Q 000143 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2058)
Q Consensus 1736 ~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~ 1785 (2058)
...+..-+..+.|.+-.||..|++.+..++.. +.+..+.|.+.+++.
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH
Confidence 34555566778888899999999988877654 444555555555543
No 256
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.64 E-value=2.4e+02 Score=35.57 Aligned_cols=179 Identities=22% Similarity=0.174 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCC
Q 000143 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKD 1934 (2058)
Q Consensus 1856 ~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d 1934 (2058)
....-|..|+.....+.... ....++-..++..++....+++...|..+.+++.+++-.-.+-+ ...-+..+.+.+.|
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 34566888888888877642 22334445677777777788899999999999999987543322 12233445555555
Q ss_pred CChhHHHHHHHHHHHHHHhhChhh-hHhH--HhhHHHHHHHH----hcCCCH-HHHHHHHHHHHHHHHHhCh----hhHH
Q 000143 1935 PSASRRQGVCIGLSEVMASAGKSQ-LLSF--MDELIPTIRTA----LCDSIL-EVRESAGLAFSTLFKSAGM----QAID 2002 (2058)
Q Consensus 1935 ~~~~vR~~a~~aL~eii~~~~~~~-l~~~--~~~ll~~L~~~----L~D~d~-~VR~~Aa~a~~~l~~~~g~----~~~~ 2002 (2058)
...+.-..++.++-.++..-.... +.+. ++.++.++... ..+... +--+++..++..+.+.... ..-+
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 444455555556555554322211 1111 13333333332 111121 4567778888888765421 0111
Q ss_pred -HHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCc
Q 000143 2003 -EIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTA 2035 (2058)
Q Consensus 2003 -~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~ 2035 (2058)
.-+..|+..|.-|. .++..++-+.++++.+++.
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~ 274 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPS 274 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 56777888876554 7899999999999876543
No 257
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=8 Score=42.86 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=68.7
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---h
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---M 1998 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g---~ 1998 (2058)
..++|.+.+++.+.+-.-|..+-.++.+++...+ +.+.|.+++++..+..++...|.+|...+..++..+....| +
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 4678999999987776677777778888888776 56778999999999999999999999999999988876655 2
Q ss_pred ---hhHHHHHHHH
Q 000143 1999 ---QAIDEIVPTL 2008 (2058)
Q Consensus 1999 ---~~~~~ilp~L 2008 (2058)
++..+++|.+
T Consensus 192 aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 192 ALVPFYRQLLPVL 204 (262)
T ss_pred hhhhHHHHhhhhh
Confidence 3445566553
No 258
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.70 E-value=1.4e+02 Score=42.57 Aligned_cols=218 Identities=16% Similarity=0.104 Sum_probs=124.4
Q ss_pred CCCCHHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCccccch---hchH
Q 000143 1310 NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKGFGISSLKK---YGIA 1380 (2058)
Q Consensus 1310 ~~~~~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L~~~~---~~~vR~~Aa~~L~~l~~~~g~~~l~~---~~il 1380 (2058)
..+.-+|+....+|+..++...++.. -..|-.++..+.+.. ...+-+.+..+|..+... +-..++. ..++
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssD-fLqSLp~sci~~li 930 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSD-FLQSLPTSCILDLI 930 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhc-chhcCChHHHHHHH
Confidence 34445566666677777776665432 233444444444433 222333455555444432 2233322 1456
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------cch--------------------hhHHHHHHHHHHHcCCCC
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGR-------LFE--------------------PYVIQMLPLLLVAFSDQV 1433 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~-------~~~--------------------p~l~~llp~Ll~~l~D~~ 1433 (2058)
+.+......+.|.++--.|+-.|..+++.+.. .-. ....-++..+.++..|+-
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 66666555554655555565555555554321 111 112245667778889999
Q ss_pred HHHHHHHHHHHHHHHHhhhh----hhH----HhHHHHHHHhcc---CCChHHHH-------HHHHHHHHHHhhChhhHh-
Q 000143 1434 VAVREAAECAARAMMSQLSA----QGV----KLVLPSLLKGLE---DKAWRTKQ-------SSVQLLGAMAYCAPQQLS- 1494 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~----~~v----~~llp~Ll~~L~---~~~~~~R~-------~a~~~Lg~la~~~p~~l~- 1494 (2058)
..||..|++++=++....+. ... -.++-+++..-. -++|..+. ..+..++.++...++++.
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999888754432 222 233444443222 13454432 367788888877665533
Q ss_pred --------hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1495 --------QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1495 --------~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
.....++..+.....|.++++.-+|+.++..+..
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2334556666667789999999999999887754
No 259
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.62 E-value=1.5e+02 Score=43.11 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH----hccCCChHHHHHHHHHHHHHHhhChhhHhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK----GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~----~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2058)
.-+..+++.+...|+..+..|...+..+......+....++|.... ...|.+..+|......+..+.....+.+++
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445566667777888898898888888776665555555554433 335788999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1496 ~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
++..++|.....-.|....|..+|-.++.....
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 999999999988899999998888887766654
No 260
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=73.37 E-value=1.5e+02 Score=36.57 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHHHhhhhh---hH----HhHHHHH
Q 000143 1395 RREGALLAFECLCEKLGR---LFEPYVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMSQLSAQ---GV----KLVLPSL 1463 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg~---~~~p~l~~llp~Ll~~l~D~~~~VR~aA-~~al~~l~~~l~~~---~v----~~llp~L 1463 (2058)
+|.+.+..++...+.... ..+.+++.++..++....+..|..|+.- ..++..++.+++.. .+ +.++...
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344455555555544331 1223344555555555555666666654 56666666666552 23 3444444
Q ss_pred HHhccC---CChHHHHHHHHHHHHHHhhChhhHh----hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--h-
Q 000143 1464 LKGLED---KAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P- 1533 (2058)
Q Consensus 1464 l~~L~~---~~~~~R~~a~~~Lg~la~~~p~~l~----~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~- 1533 (2058)
+..+.+ +-+..|..-..++..+...++..+. ..+..++..+.-.+++++..|...++.++..+.+.+.+ +
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 455543 3478899999999999988766543 34667888888889999999999999999999887654 2
Q ss_pred --------hHHhHHHHHHhccCCCC
Q 000143 1534 --------EIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1534 --------~i~~lvp~Ll~~l~d~~ 1550 (2058)
++-.++..++..+.|+.
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 22345555566666664
No 261
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.17 E-value=1.2e+02 Score=43.95 Aligned_cols=192 Identities=20% Similarity=0.166 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHH----HHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR----EGLADRNSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~----~~l~~~~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
.-+..++..+.+- |...+..|.+.+..++.....+... .|+|... +.+-|. +.++|......+..+...+++
T Consensus 41 sel~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~~~e~~~--~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 41 SELDIIVKKLLKR-DETTKIKALQELSELIDTSDTEELK--GILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred HHHHHHHHHHhcc-ChHHHHHHHHhHHHhcccccchHHh--hhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666654 4788888999999888765444333 2343332 334454 899999999999999999999
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-hhH----HhHHHHHHHhc--------cC----------
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGV----KLVLPSLLKGL--------ED---------- 1469 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~~v----~~llp~Ll~~L--------~~---------- 1469 (2058)
.+.||+..++|..+-...|....|..+|-.........-.. +.. ..+.+.+.+.+ .+
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E 196 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELE 196 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHH
Confidence 99999999999999999999988988888777765431111 111 22333332221 11
Q ss_pred -CChHHHHHHHHHHHHHHhhChh--hHh---hhhhhHH--HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1470 -KAWRTKQSSVQLLGAMAYCAPQ--QLS---QCLPKIV--PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1470 -~~~~~R~~a~~~Lg~la~~~p~--~l~---~~L~~Ii--p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
...|+-..++.++..+..+... .+. ..+..+. ..+-+.+.+..|.++.+..+.+..+.+.+.+
T Consensus 197 ~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 197 SKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 1233444566666665543221 111 2222222 3456678899999999999999888876653
No 262
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=72.02 E-value=37 Score=35.19 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=52.3
Q ss_pred hHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc---c--C------CCHHHHHHHHHH
Q 000143 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL---A--D------ENESVRDAALGA 1760 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L---~--d------~~~~VR~~a~~a 1760 (2058)
..+.+++..|...+++.++.|+--++.++.+++...++.|...+..=...+-.+. . | ....||..|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 3577899999999999999999999999999999888888776654443333221 1 1 123566666666
Q ss_pred HHHHH
Q 000143 1761 GHVLV 1765 (2058)
Q Consensus 1761 l~~lv 1765 (2058)
+..+.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 65543
No 263
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=71.26 E-value=3e+02 Score=35.26 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred chHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhChhh
Q 000143 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL--FKSAGMQA 2000 (2058)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l--~~~~g~~~ 2000 (2058)
.++..+.+.---.++........-+.+++..++++.+......+...+..+++.++..|-+.|..-+..= .... ..+
T Consensus 255 ~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-~~~ 333 (409)
T PF01603_consen 255 PVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-SQN 333 (409)
T ss_dssp HHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-HCT
T ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-HhC
Confidence 3334444433223333333344457778888888888888888888899999999999999998665442 2111 234
Q ss_pred HHHHHHHHHHhcCC-------CcchHHHHHHHHHHHhhc
Q 000143 2001 IDEIVPTLLHALED-------DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2001 ~~~ilp~Ll~~L~~-------~~~~~~al~aL~~i~~~~ 2032 (2058)
...++|.++..|.. +..+..+..+++.++..+
T Consensus 334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 56778888877753 345778888888888755
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=70.92 E-value=1.2e+02 Score=34.18 Aligned_cols=78 Identities=27% Similarity=0.190 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhc
Q 000143 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923 (2058)
Q Consensus 1844 ~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~ 1923 (2058)
+.+..+....-+.+..+|..|+++++.+...---.-...+|.+ +....|++..+|..|...+.++.++.+.-+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~l----IAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTL----IALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHh----hhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344445555567789999999999887753111223445554 445689999999999999999998876544333
Q ss_pred hH
Q 000143 1924 II 1925 (2058)
Q Consensus 1924 ll 1925 (2058)
+.
T Consensus 84 ~~ 85 (187)
T PF12830_consen 84 YS 85 (187)
T ss_pred HH
Confidence 33
No 265
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.71 E-value=3.4e+02 Score=35.55 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=133.8
Q ss_pred chhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCC
Q 000143 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2058)
Q Consensus 1191 ~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d-~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~ 1269 (2058)
-..|..++..+......+.-+.++.+.... ...+.. ...++|+.+.+...+.+...... ....-..|-..+..+..+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~~~-~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEIWYAA-KDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHhcCCCc
Confidence 346777777777776666655555544433 223333 34679999998888888754321 111112333444443333
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHh-hh---CC-------------CCH-----HHH--HHHHHhhH
Q 000143 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD-VL---NT-------------PSE-----AVQ--RAVSSCLS 1325 (2058)
Q Consensus 1270 ~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~-~L---~~-------------~~~-----~V~--~av~~~L~ 1325 (2058)
++- ..|-.++..|..=++.+..-...+...+...+. .+ .. ... +.+ .....-+.
T Consensus 82 ~d~--~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 82 DDF--DLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred hhH--HHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 222 345444444444333332222222222222221 11 00 000 000 00111112
Q ss_pred hhHhhc-----ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hhCccccchhchHHHHHHHHhCCCCHHHHHH
Q 000143 1326 PLMQSM-----QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK--GFGISSLKKYGIAATLREGLADRNSAKRREG 1398 (2058)
Q Consensus 1326 ~l~~~~-----~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~--~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~ 1398 (2058)
.+++.. .+....++..++...........=+.+...+..++. .++.+.+. .++..|....... ...+.
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~~~---~l~~~ 234 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVNSV---SLCKP 234 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhccc---ccchh
Confidence 222211 122344555555543333344444566777777765 22233332 5566665554322 23344
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHc--CC----CCHHHHHHHHHHHHHHHHhhhhhhH-----H--hHHHHHHH
Q 000143 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAF--SD----QVVAVREAAECAARAMMSQLSAQGV-----K--LVLPSLLK 1465 (2058)
Q Consensus 1399 al~al~~L~~~lg~~~~p~l~~llp~Ll~~l--~D----~~~~VR~aA~~al~~l~~~l~~~~v-----~--~llp~Ll~ 1465 (2058)
+..++..|+.. .. -...+..+...+ .| ++..+-.-|...++.+....+.+++ . .++|.+..
T Consensus 235 ~w~~m~nL~~S---~~---g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~ 308 (464)
T PF11864_consen 235 SWRTMRNLLKS---HL---GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLN 308 (464)
T ss_pred HHHHHHHHHcC---cc---HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHH
Confidence 44445445431 11 123444444444 22 2344555677777777655544433 2 38899999
Q ss_pred hccCCChHHHHHHHHHHHHHH
Q 000143 1466 GLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1466 ~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
.+...+.++-...+..+..+.
T Consensus 309 al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 309 ALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHhCCCCeehHHHHHHHHHHH
Confidence 998777777666676666666
No 266
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.25 E-value=10 Score=42.04 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=70.7
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-----
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK----- 1531 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~----- 1531 (2058)
...+|.+.++|.+.+...|..|-+-+..+....++.+.+.+|+++..|...|...+.+|-..++++|.++....+
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 467888889998888888888888888888778888889999999999999999999999999999999876543
Q ss_pred -chhHHhHHHHH
Q 000143 1532 -NPEIASLVPTL 1542 (2058)
Q Consensus 1532 -~~~i~~lvp~L 1542 (2058)
-|++.+++|.+
T Consensus 193 LVPfYRQlLp~~ 204 (262)
T KOG3961|consen 193 LVPFYRQLLPVL 204 (262)
T ss_pred hhhHHHHhhhhh
Confidence 15666666665
No 267
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.57 E-value=1.2e+02 Score=37.20 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhhHh--------hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc---c
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIG--------LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP---D 1657 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~--------~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~---~ 1657 (2058)
+.++.+.....++.|... ++ ...+.+. .....+.+.+..+++.+...++..++.+....+..... +
T Consensus 70 ~~d~v~yvL~li~dll~~--~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSD--DP-SRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp -HHHHHHHHHHHHHHHH---SS-SSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--CH-HHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 445666666666666552 22 1111110 13445556788889999999999999998765544333 6
Q ss_pred hHHHHHhhcccCCCh---HHHhhHHHHHHHHHHHhchh--HH-HHhhHHHHHhh-----ccC--ChhHHHHHHHHHHHhH
Q 000143 1658 LVSWLLDALKSDNSN---VERSGAAQGLSEVLAALGTV--YF-EHILPDIIRNC-----SHQ--RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~---~~R~~aa~~L~~i~~~~g~~--~l-~~llp~Ll~~l-----~~~--~~~vR~~al~~l~~la 1724 (2058)
+++.+++.+++.... ..+..++++++.++..-.-. +. ...++.+...+ .+. +..+.-.++.|+.-+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL- 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL- 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-
Confidence 777777777653322 23466778888776432211 11 34455555555 122 333333333333222
Q ss_pred HHhchhHHHhH--HHHHHHHHHhccCC-CHHHHHHHHHHHHHHH
Q 000143 1725 RSLGVQFQNYL--QQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1725 ~~~g~~f~pyl--~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv 1765 (2058)
+|.+.....+ ..++|.+...+.+. -+.|-..++.+++.++
T Consensus 226 -SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 226 -SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp -TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred -hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2222221111 11777777766543 3444444555555444
No 268
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=69.21 E-value=1.1e+02 Score=37.86 Aligned_cols=121 Identities=22% Similarity=0.297 Sum_probs=85.8
Q ss_pred CHHHHHH-HHHHHHHHHHHhcccchhhHHHHHHHHHHH----cCC---CCHHHHHHHHHHHHHHHHh-------hhhhhH
Q 000143 1392 SAKRREG-ALLAFECLCEKLGRLFEPYVIQMLPLLLVA----FSD---QVVAVREAAECAARAMMSQ-------LSAQGV 1456 (2058)
Q Consensus 1392 ~~~~R~~-al~al~~L~~~lg~~~~p~l~~llp~Ll~~----l~D---~~~~VR~aA~~al~~l~~~-------l~~~~v 1456 (2058)
.+..|+. ++..+..+...++..+.+++..++..++.+ +.+ +-|..|..-...++.+... ++++..
T Consensus 84 ~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f 163 (319)
T PF08767_consen 84 VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF 163 (319)
T ss_dssp -GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH
T ss_pred CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 3444544 577788888988887888887776666543 333 3478888877777777654 345566
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh--------hHhhhhhhHHHHHHHHhcCCC
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ--------QLSQCLPKIVPKLTEVLTDTH 1512 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~--------~l~~~L~~Iip~L~~~L~D~~ 1512 (2058)
+.++..+.-++.+.+..+...++.++..+...... ....++-.++..+..++.|+.
T Consensus 164 ~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 164 KLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 78888888889999999999999999888865433 245566677778888888864
No 269
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=67.58 E-value=56 Score=37.60 Aligned_cols=142 Identities=19% Similarity=0.083 Sum_probs=85.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHhcccchhhHH
Q 000143 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL-AFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~-al~~L~~~lg~~~~p~l~ 1419 (2058)
.+...|..++..+.|..|...+....... ....++.+...+..-.+|.+.+..+. .++.+.. .+ .
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~------~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~-------~~-~ 119 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKL------TEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLK-------KH-P 119 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH-------HH-G
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhh------hHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHH-------hh-H
Confidence 44555556666666766665554322221 11345666777766668876665422 1222111 11 3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
...+.+.....++++.+|.++..++-..... ...+.++..+...+.++++.+|.+...+|..++...|+...+++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4667777788888999988886665433322 4456677777777788889999998888988888777766655443
No 270
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=66.49 E-value=21 Score=35.04 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1141 ~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
+.++.+|+.||+.++.++..+.+....+...+...+.+.+.++ ..++..+-|+..+|..+.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~----~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP----KKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHH
Confidence 5689999999999999998877665555566666555554432 3467889999999988854
No 271
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=64.98 E-value=9.4 Score=31.42 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=30.0
Q ss_pred HHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000143 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1481 ~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL 1523 (2058)
+++.+....|.-+.. +.+...+...+.|+++.||++|.+.+
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 355566655554433 37788888999999999999998753
No 272
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=63.23 E-value=1.6e+02 Score=33.26 Aligned_cols=128 Identities=17% Similarity=0.140 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhh
Q 000143 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2058)
Q Consensus 1886 L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ 1965 (2058)
.++.+++..-+++..+|..|.+.++.+.+ .|--.-.+.+|.+.....|+++.+|..|...+.++.+..+.--...|.+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEG 87 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444445688999999999999988776 35334458899999988999999999998888877766533211222222
Q ss_pred HHHHHH--HHh-cCCCHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHhcCC
Q 000143 1966 LIPTIR--TAL-CDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALED 2014 (2058)
Q Consensus 1966 ll~~L~--~~L-~D~d~~VR~~Aa~a~~~l~~~~g--~~~~~~ilp~Ll~~L~~ 2014 (2058)
+--... ..+ .|.....+......++.+...+. ......++..++..+..
T Consensus 88 i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 88 IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 111111 111 22222222224455566665554 34566788888877764
No 273
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=61.94 E-value=14 Score=30.04 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
...+|.|.+++.+++++|++.|+.|++.+.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999875
No 274
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=60.43 E-value=4.4e+02 Score=33.17 Aligned_cols=64 Identities=23% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHhCcc--hhhc--hHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1889 TLISSLASS-SSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1889 ~l~~~L~~~-~~~~R~~A~~~Lg~L~~~lg~~--~l~~--llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
.+++.|..+ ++.+-..|+.=+|++++...+. ++.+ --..+.+.++.+++++|..|..|+..++.
T Consensus 370 iL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 370 ILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 333334443 5778888999999999988754 2322 23456778899999999999999887764
No 275
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.35 E-value=6.5e+02 Score=35.12 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=69.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh---hCCCCchh-hhHhhhhHHHHHh-hCCCCHHHHHHHHHHHHHHHHh
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL---VTEPKDMI-PYIGLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~---l~~~~~l~-pyl~~ll~~L~~~-l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
...+|.+...+-+.+++.|.=|...+..+... ++. +++. .+.+.+...+..+ -...++..-..--..+..+...
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~-~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD-EEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch-hhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHH
Confidence 45778888888888999999999999887652 111 3333 2334455555544 1122333333344566666665
Q ss_pred hcccC----c-----cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH
Q 000143 1650 MGEEN----F-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2058)
Q Consensus 1650 lg~~~----~-----~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2058)
+.++. + +.++..+++.|....+. .-.....++..+++..|.++.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~-~l~~lL~~l~~lL~k~~~~FW 250 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSP-PLPILLRCLSILLEKLGSDFW 250 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccch-hHHHHHHHHHHHHHhCHHHHh
Confidence 55541 1 12556667777654322 334567888888888877633
No 276
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.14 E-value=99 Score=33.27 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=57.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~D-~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.+..|...+.+. ++++--.|+..++.+.+.+|..|...+. ..+..+...+.+ .++.|+..+...+......+.
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5677777777765 8888888999999999999987766553 466666666766 688899988888887776655
No 277
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=59.93 E-value=96 Score=32.23 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=44.9
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh---hHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP---KIVPKLTEVL--------TDTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~---~Iip~L~~~L--------~D~~~~VR~aA~~aL 1523 (2058)
....++..|.+.|++++..+|.-++..|-.++...+..+...+. .+|..+.+.- .+.+..||.+|-+++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 34566777777777777777777777777777766654433322 2333332222 123467888888887
Q ss_pred HHHH
Q 000143 1524 QQVG 1527 (2058)
Q Consensus 1524 ~~l~ 1527 (2058)
..+-
T Consensus 115 ~~if 118 (122)
T cd03572 115 KAIF 118 (122)
T ss_pred HHHh
Confidence 7664
No 278
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=59.83 E-value=5.5e+02 Score=34.17 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCcchhhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhhH-hHHhhHHHHHHHHhcCCCHHHHHH
Q 000143 1907 RALGELVRKLGERVLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALCDSILEVRES 1984 (2058)
Q Consensus 1907 ~~Lg~L~~~lg~~~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~-~~~~~ll~~L~~~L~D~d~~VR~~ 1984 (2058)
..++.+...+..+.+.+++-.+...+... ...+|..++.-++.+....-++..+ +-.+.+.......|.|.++-+++.
T Consensus 463 ~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ 542 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQH 542 (559)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHH
Confidence 33444544455556667777777776433 3346776666555444333222222 223444444445679999999999
Q ss_pred HHHHHHHHHHHh
Q 000143 1985 AGLAFSTLFKSA 1996 (2058)
Q Consensus 1985 Aa~a~~~l~~~~ 1996 (2058)
|.+||+.+++..
T Consensus 543 ALeAF~~FAe~T 554 (559)
T PF14868_consen 543 ALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHhccC
Confidence 999999998754
No 279
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.13 E-value=7.9e+02 Score=35.72 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=62.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHH--hHHHHHHHHHHHhcC---------CCHH----HHHHHHHHHHHH
Q 000143 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE--IMPVLMNTLISSLAS---------SSSE----RRQVAGRALGEL 1912 (2058)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~--~l~~L~~~l~~~L~~---------~~~~----~R~~A~~~Lg~L 1912 (2058)
.+..+..|.-..||..|.+++=.++...+..+.. +-..++..+...|.+ .+.+ .-+...-+++.+
T Consensus 1001 ~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgI 1080 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGI 1080 (1610)
T ss_pred HHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHH
Confidence 3334457778899999999887777543322222 111122222222220 1111 124455666666
Q ss_pred HHHhCcc------------hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000143 1913 VRKLGER------------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1913 ~~~lg~~------------~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2058)
++-+.+. ....++..+.+...+.++++...+..++.+++.+
T Consensus 1081 aklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1081 AKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 6655443 2456777788888888999999999998887654
No 280
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.88 E-value=36 Score=34.97 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~~--l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..+-..||.=||.++...|.. +...+ ..-..+++++++++++||..|+.|+..+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4455556777788888776642 21111 344567889999999999999999988753
No 281
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=57.80 E-value=29 Score=34.12 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCC--hhHHHHHHHHHHHH
Q 000143 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS--ASRRQGVCIGLSEV 1950 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~--~~vR~~a~~aL~ei 1950 (2058)
++++..|..|+..++.++++.+.. ..+.+...+.+.+.|+. ...+.|+..+|.++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999865 35788888888887654 56788999888755
No 282
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.20 E-value=5e+02 Score=32.85 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v---~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
.++..+.+++.-++...-.....-+..++-......+ ..++..+.+.+.......|...+.++-.+....+-.-...
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence 4556666666555544444444444433211111111 3566777777777888888888888888876644322222
Q ss_pred hhhHHHHHHHHhcCCC
Q 000143 1497 LPKIVPKLTEVLTDTH 1512 (2058)
Q Consensus 1497 L~~Iip~L~~~L~D~~ 1512 (2058)
-..++|.+..++++.+
T Consensus 384 ~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDT 399 (791)
T ss_pred hccchHHHHHHhCCcc
Confidence 2467888888887643
No 283
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.02 E-value=5.6e+02 Score=37.56 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
+.+.|-.|+..+..+.+.+|+..-+.+.+.+|.+-+.+.|++..|-..+...++++=.
T Consensus 1554 ~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~ 1611 (1621)
T KOG1837|consen 1554 SRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEE 1611 (1621)
T ss_pred cHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998999999999999999999999998888776665533
No 284
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.82 E-value=4.3e+02 Score=31.92 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--cccchhch
Q 000143 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPLL 1776 (2058)
Q Consensus 1699 p~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~--~~~~l~~l 1776 (2058)
-.+...+.+.+|.||..++..+..+...-+..|..|-...++.+.+.+.+..+ .+. |..|+..+...- ....++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~-a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEP-AATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 34566778889999999998776666655556777888899999999988776 222 223332222111 11112224
Q ss_pred HHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1777 LPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1777 lp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+..+...+.|+.|..-...+.++.++
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHh
Confidence 44445555666565555555555554
No 285
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.81 E-value=1.3e+02 Score=32.29 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhcc
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
-.+.+..|...+.+.++.+...++.++..+..+.|..|...+ ..++..+.+.+.+ .++.|+..++..+......|..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 356777778888889999999999999999999999886544 4467777777776 6788999888888887777653
No 286
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=56.60 E-value=2e+02 Score=31.46 Aligned_cols=117 Identities=26% Similarity=0.243 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhh--chHHHHhhhcCCCChhHHH
Q 000143 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP--SIIPILSRGLKDPSASRRQ 1941 (2058)
Q Consensus 1864 A~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~--~llp~L~~~l~d~~~~vR~ 1941 (2058)
+..++..+....+..-.+++..+.+.++..-.++.. .-.+||+.++++..-.... .-+..+.+.+..-..++-.
T Consensus 38 G~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~----~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~ 113 (158)
T PF14676_consen 38 GIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSS----QYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAI 113 (158)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--H----HHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchh----HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344555555545555557777777777654433222 2469999999876533221 1111222333333445555
Q ss_pred HHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000143 1942 GVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2058)
Q Consensus 1942 ~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~ 1989 (2058)
+...|+-=++... . ...+.++-.+++++-..+.++|..|..+|
T Consensus 114 ~ll~Al~PLi~~s-~----~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 114 GLLRALLPLIKFS-P----SLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHTT--H----HHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-H----HHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 5555665555432 2 23478899999999999999999999887
No 287
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.20 E-value=4.9e+02 Score=32.38 Aligned_cols=183 Identities=16% Similarity=0.185 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCccc------c-ch-hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG-FGISS------L-KK-YGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~-~g~~~------l-~~-~~il~~L~~~l~~~~~~~~R~~al~al~~L~~ 1408 (2058)
.+..++..|..- +.+.|+.++.....+... .|... + .. ++++..|...-++.+ .|+. .|.+..
T Consensus 77 ll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d------ial~-~g~mlR 148 (335)
T PF08569_consen 77 LLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD------IALN-CGDMLR 148 (335)
T ss_dssp HHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT------THHH-HHHHHH
T ss_pred HHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc------ccch-HHHHHH
Confidence 344444444333 477788888777777764 23221 1 11 356666666555442 1211 223333
Q ss_pred HhcccchhhHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---h----hHHhHHHHHHHhccCCChHHHH
Q 000143 1409 KLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---Q----GVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1409 ~lg~~~~p~l~~-----llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~----~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
.+-+ .++.... .+-.+++....++-+|...|..++..+...... + ..+.+.......+.++++-+|+
T Consensus 149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 2221 1222211 223355667778888888888888887654332 1 2356666677778899999999
Q ss_pred HHHHHHHHHHhhCh--hhHhhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1477 SSVQLLGAMAYCAP--QQLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p--~~l~~~L--~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.++.+||.+..... ..+..|+ +.-+..++.+|+|+...+|-.|...++-|+..
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999985433 2344444 34566788899999999999999999988763
No 288
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.75 E-value=1.8e+02 Score=31.02 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=54.8
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D------~~~~VR~aA~~aL~~l~~~ 1529 (2058)
..+..+.+.+.+.+.++..-|+.+|..+...|+..+...+ ...+..+.+++.+ .++.|+...+..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445556677888888888899999999999887654432 2455556666642 5789999999999988877
Q ss_pred cC
Q 000143 1530 IK 1531 (2058)
Q Consensus 1530 ~~ 1531 (2058)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 64
No 289
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.53 E-value=76 Score=32.56 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=49.1
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH--HHHHHHH-----Hc-CCCCHHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ--MLPLLLV-----AF-SDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~--llp~Ll~-----~l-~D~~~~VR~aA~~al~~l 1447 (2058)
.++..|...+.+. +|++.--|+..+..+...+|..|..++.. .+..++. .. .+.+..||+.+...+...
T Consensus 37 ~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 6788888888877 99999999999999999999877766543 2222221 11 234678888877666543
No 290
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=54.02 E-value=31 Score=37.75 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHh-HH-hhHHHHHHHH
Q 000143 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS-FM-DELIPTIRTA 1973 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~-~~-~~ll~~L~~~ 1973 (2058)
....++|..+.-++..+....++.+...+-..+...+.+.+.+....++.++..++... ++.-.+ |. +.+++.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHH
Confidence 34677899999999888766666555556666666665544445666666676665443 222111 11 5677777777
Q ss_pred hc--CCCHHHHHHHHHHHHHHHHHhCh--hhHHHHHHHHHHhcCC
Q 000143 1974 LC--DSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTLLHALED 2014 (2058)
Q Consensus 1974 L~--D~d~~VR~~Aa~a~~~l~~~~g~--~~~~~ilp~Ll~~L~~ 2014 (2058)
+. .++..+..++++++..-+..-.- .-....++.|.+.+.+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKN 139 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTT
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc
Confidence 76 67888999999888776522111 1234566666666643
No 291
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.62 E-value=3.6e+02 Score=36.98 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcch--HHHHHHHHhhhC-CCCHHHHHHHHHhh
Q 000143 1248 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLN-TPSEAVQRAVSSCL 1324 (2058)
Q Consensus 1248 g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i--~~iv~~Ll~~L~-~~~~~V~~av~~~L 1324 (2058)
...+-..++..+..++..+ .-|..++.+||.+.+.=+..-.++ ..++..|+..|. |.+..+-..+..||
T Consensus 64 ~~P~~K~~~~~l~~~~~~~--------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~L 135 (668)
T PF04388_consen 64 QEPHDKHLFDKLNDYFVKP--------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVL 135 (668)
T ss_pred CCccHHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3456678888888888763 458888999999886322211111 246677777775 55666666777888
Q ss_pred HhhHhhcccchHHHHHHHHHHHh
Q 000143 1325 SPLMQSMQDEAPTLVSRLLDQLM 1347 (2058)
Q Consensus 1325 ~~l~~~~~~~~~~~v~~Ll~~L~ 1347 (2058)
..+++.+......+++.+|..+.
T Consensus 136 imlLP~ip~~l~~~L~~Lf~If~ 158 (668)
T PF04388_consen 136 IMLLPHIPSSLGPHLPDLFNIFG 158 (668)
T ss_pred HHHhccccchhhHHHHHHHHHHH
Confidence 88888777777777777776543
No 292
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=3.2e+02 Score=36.13 Aligned_cols=269 Identities=17% Similarity=0.135 Sum_probs=125.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000143 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2058)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~ 1427 (2058)
..++..+.-+|.-+++.. +.|... ...+.+..|...++++ +...|-++++.+|....+-.+ + +++..+..
T Consensus 425 ys~~~~ikaGaLLgigi~--~~gv~n-e~dpalALLsdyv~~~-~s~~ri~aIlGLglayaGsq~--e----~V~~lL~P 494 (878)
T KOG2005|consen 425 YSDESYIKAGALLGIGIS--NSGVFN-ECDPALALLSDYLQSS-SSIHRIGAILGLGLAYAGSQR--E----EVLELLSP 494 (878)
T ss_pred hcCCchhhhccceeeeee--cccccc-ccCHHHHHHHHhccCC-CceeehHHhhhhHHhhcCCch--H----HHHHHHhH
Confidence 334444555555555433 333222 1236777788888877 778899999888765443322 2 33334445
Q ss_pred HcCCCCHH--HHHHHHHHHHHH-HHhhhhhhHHhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000143 1428 AFSDQVVA--VREAAECAARAM-MSQLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2058)
Q Consensus 1428 ~l~D~~~~--VR~aA~~al~~l-~~~l~~~~v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip 1502 (2058)
.+.|.+.. |---|.-+++.+ +.....+.-..++..+.+.-. ..+...|..++ .||.+..+-.+. +.
T Consensus 495 i~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~L-GL~llflgkqe~--------~d 565 (878)
T KOG2005|consen 495 IMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLAL-GLALLFLGKQES--------VD 565 (878)
T ss_pred HhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHH-HHHHHHhcccch--------HH
Confidence 55665544 333333333333 222222323555666655433 12333444332 223332222211 11
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhcC-ch-hHHhHHHHHHhccCCCChh--HHHHHHHHHh--ccccccCChhhHhh
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP-EIASLVPTLLMGLTDPNDH--TKYSLDILLQ--TTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~-~i~~lvp~Ll~~l~d~~~~--vr~al~~L~~--~~f~~~~~~~~l~~ 1576 (2058)
...+.+..-....|+.+-..+...+..-. |- .++. ..++....++... ..+-+..|+- +.+...+ ...-
T Consensus 566 ~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeei---g~eM 640 (878)
T KOG2005|consen 566 AVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEI---GSEM 640 (878)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhh---hhHH
Confidence 11222222223344444333333332211 10 1111 1112222222111 1000111111 1111111 1222
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~ 1648 (2058)
.+..+...+.-.++.+|+..--+++-++- .+|+- .++..|-+...|.+.+|-..++-++|.++.
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 45556666666677888887777776664 34321 467888888889999998888888887654
No 293
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.01 E-value=7.4e+02 Score=35.22 Aligned_cols=128 Identities=11% Similarity=0.107 Sum_probs=80.1
Q ss_pred chhhHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh
Q 000143 1414 FEPYVIQMLPLL-LVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1414 ~~p~l~~llp~L-l~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~ 1491 (2058)
++.++..+...+ +....|-.+.+|..|.+.++..+..+|..-+ +..+.-+-=.|.|.+-.+|..++.+|-.+.+....
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~ 359 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDED 359 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcccc
Confidence 333444444333 2457899999999999999999999987655 33333333345688899999999999999876321
Q ss_pred --hHhhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHH--HhhcCchhHHhHHHH
Q 000143 1492 --QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQV--GSVIKNPEIASLVPT 1541 (2058)
Q Consensus 1492 --~l~~~L~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l--~~~~~~~~i~~lvp~ 1541 (2058)
.+.......=..++++. .|-+..||...+..+-.. ...+.+.++..+.+.
T Consensus 360 ~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~L 414 (1048)
T KOG2011|consen 360 KDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSL 414 (1048)
T ss_pred chHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHH
Confidence 12222222223444444 677888888777665544 233444444443333
No 294
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=52.71 E-value=2.8e+02 Score=38.05 Aligned_cols=71 Identities=6% Similarity=0.151 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hh---HHhHHHHHHhcc
Q 000143 1476 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE---IASLVPTLLMGL 1546 (2058)
Q Consensus 1476 ~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~---i~~lvp~Ll~~l 1546 (2058)
.-++++...+...|.+++.......+..+.++|.+.+++++..+++++-.|+..-.+ +| ++.+++.+.+..
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~ 149 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLC 149 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHh
Confidence 347788888888888888777778888888999999999999999999999976543 23 255555555443
No 295
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.21 E-value=1.7e+02 Score=31.35 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=52.0
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC------CCCHHHHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS------DQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~------D~~~~VR~aA~~al~~l~~ 1449 (2058)
+.+..|...+.+. ++++---|+..+..+.+.+|..|...+. ..+.-+.+.+. ..++.|+......+.....
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566677777766 7888888999999999999987765543 34445555553 2467888888777777665
Q ss_pred hhh
Q 000143 1450 QLS 1452 (2058)
Q Consensus 1450 ~l~ 1452 (2058)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 443
No 296
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=52.12 E-value=1.5e+02 Score=31.41 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=58.3
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh--hHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhc
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLTD---THPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~--~Iip~L~~~L~D---~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
-+..+..+.+.+.+++..+...|+.+|..+...|+..+...+. ..+..+.+++.+ .++.||..+...+...+..+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556667777888889999999999999999999876543322 344446666654 47899999999999998877
Q ss_pred Cc
Q 000143 1531 KN 1532 (2058)
Q Consensus 1531 ~~ 1532 (2058)
++
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 64
No 297
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.88 E-value=1.6e+02 Score=31.16 Aligned_cols=75 Identities=21% Similarity=0.146 Sum_probs=55.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD---QVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~D---~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.+..|...+.+. ++++.-.|+..+..+...+|..|...+. ..+..+...+.. .++.||..+.+.+......++
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5677788888876 8999999999999999999987755443 334445555543 477899888888887776655
Q ss_pred h
Q 000143 1453 A 1453 (2058)
Q Consensus 1453 ~ 1453 (2058)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 298
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=51.10 E-value=21 Score=34.89 Aligned_cols=58 Identities=16% Similarity=0.321 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
..|.+++..|+++....|-.+-+++|.++..|....+| ...|+..+-++|..|-..-+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 56888999999999999988888999999999998887 66789999999999876543
No 299
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=50.76 E-value=99 Score=31.08 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCC
Q 000143 282 LSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP---DALEAMFYAIKAVIGGS 339 (2058)
Q Consensus 282 ls~~~~~l~~~l~s~lkS~~~~vR~~a~~~~~~l~~~~~d~---~~~~~~~~~i~~~l~~~ 339 (2058)
+..++..++--+.+.+-+-.+.||..|+.++..|...|.+. ....+++++.++.++..
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 44466778888999999999999999999999999998776 34558999999888874
No 300
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.58 E-value=1.2e+03 Score=35.04 Aligned_cols=166 Identities=15% Similarity=0.169 Sum_probs=90.4
Q ss_pred HHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCC-ChhHHHHHHH
Q 000143 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP-NDHTKYSLDI 1559 (2058)
Q Consensus 1481 ~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~-~~~vr~al~~ 1559 (2058)
.+.....+.+..+..|++.++...-.++..+++.|+.-+......+-..+..-+-++++..|+..+.+. +..+..|++.
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~v 496 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDV 496 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344444444566788889998888888999999999999999888887774323367888887776433 3355567777
Q ss_pred HHhccccccCChhhHhhHHHHHHHh---hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHH
Q 000143 1560 LLQTTFVNTVDAPSLALLVPIVHRG---LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2058)
Q Consensus 1560 L~~~~f~~~~~~~~l~~llp~L~~~---L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR 1636 (2058)
|......+ ...+......+... +.+-+..--+....++..++-. +...-...-+.+.-.+.+.+..++...+
T Consensus 497 L~~L~~~~---~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~--~~~~~s~i~del~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 497 LCELAEKN---PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFS--DSSSSSSIQDELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp HHHHHHH----HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHH--HSS---HHHHHHHHHHHHHHT-SSHHHH
T ss_pred HHHHHhcc---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--CcccchhhHHHHHHHHHHhhcCCcHHHH
Confidence 76421111 11111111122222 2333333334456777777642 2222222334455556666777777766
Q ss_pred HHHHHHHHHHHHhhc
Q 000143 1637 SVAARAIGSLIRGMG 1651 (2058)
Q Consensus 1637 ~~a~~aLg~l~~~lg 1651 (2058)
...+-+.-.++..++
T Consensus 572 ~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 572 RIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHH
Confidence 544433333344444
No 301
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=49.32 E-value=21 Score=28.55 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
..+|.|.+++++.++.++..++++|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888888889999999999999875
No 302
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=48.06 E-value=1.8e+02 Score=29.77 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=49.8
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh--HHHHHHH------HhcCCCHHHHHHHHHHHHHH
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK--IVPKLTE------VLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~--Iip~L~~------~L~D~~~~VR~aA~~aL~~l 1526 (2058)
+.+.++..+.+++.+.+|++..-|+.+|..+...+++.+..++.. .+..++. .-.+.+..||..+.+.+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345677778888999999999999999999999988766554322 1112211 01245788888887776554
No 303
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.81 E-value=2.5e+02 Score=30.10 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=54.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSA 1453 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~-D~~~~VR~aA~~al~~l~~~l~~ 1453 (2058)
+.+..|...+.+. ++++--.|+..++.+...+|..|...+. .++..+...+. ..++.|++.+...+......+..
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 5677777777775 8888888999999999999976665442 34555555444 46778888888877777665543
No 304
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.77 E-value=5.6e+02 Score=30.64 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=93.9
Q ss_pred HhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCcchhhchHHHHhhh-cCCCChhHHHHHHHHHHHHHHhhC
Q 000143 1881 EIMPVLMNTLISSLASSS----SERRQVAGRALGELVRKLGERVLPSIIPILSRG-LKDPSASRRQGVCIGLSEVMASAG 1955 (2058)
Q Consensus 1881 ~~l~~L~~~l~~~L~~~~----~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~-l~d~~~~vR~~a~~aL~eii~~~~ 1955 (2058)
-.+-..+|.++..+.+++ ...-...++.|+.+++..|...+..++..+.+. +++.+.-.++.+ ..+. ....
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~-~~l~---~~f~ 182 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVV-SYLR---EAFF 182 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHH-HHHH---HHhC
Confidence 334455666777777776 133345668888998776666566666555432 222223333322 2232 2222
Q ss_pred hhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcC
Q 000143 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1956 ~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~~ 2033 (2058)
-+|..+++..+...+.+.-+.+|......+..+.++.. .+...+++-++++.|+.+- ...|+.-|..++...+
T Consensus 183 ----P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~-~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 183 ----PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDL-WMEALEVLDEIVTRSG 257 (262)
T ss_pred ----chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCcc-HHHHHHHHHHHHhhcc
Confidence 23446677888888989999999999999999987765 2456689999999997653 4567777788877654
Q ss_pred C
Q 000143 2034 T 2034 (2058)
Q Consensus 2034 ~ 2034 (2058)
.
T Consensus 258 s 258 (262)
T PF14225_consen 258 S 258 (262)
T ss_pred c
Confidence 3
No 305
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.56 E-value=1.9e+02 Score=30.83 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=62.5
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCC-C-HH--HH
Q 000143 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE-N-ES--VR 1754 (2058)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~-~-~~--VR 1754 (2058)
.+.+.++.- .....+.+..|...+.+.++.+...++.++..+....|..|...+ ..++..+.+.+.+. . +. ||
T Consensus 28 ~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk 106 (140)
T PF00790_consen 28 EICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVK 106 (140)
T ss_dssp HHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHH
T ss_pred HHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHH
Confidence 344444332 224467777888888999999999999999999999999886544 34666666655432 2 22 88
Q ss_pred HHHHHHHHHHHHHhc
Q 000143 1755 DAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1755 ~~a~~al~~lv~~~~ 1769 (2058)
+.++..+......|.
T Consensus 107 ~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 107 EKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 888888877777764
No 306
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=47.32 E-value=1.6e+02 Score=32.30 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=43.8
Q ss_pred ChhhhHhHHhhHHHHHHHHhcCCC-HHH--HHHHH-HHHHHHHHHhCh----hhHHHHHHHHHHhcCC----CcchHHHH
Q 000143 1955 GKSQLLSFMDELIPTIRTALCDSI-LEV--RESAG-LAFSTLFKSAGM----QAIDEIVPTLLHALED----DQTSDTAL 2022 (2058)
Q Consensus 1955 ~~~~l~~~~~~ll~~L~~~L~D~d-~~V--R~~Aa-~a~~~l~~~~g~----~~~~~ilp~Ll~~L~~----~~~~~~al 2022 (2058)
.++.+.|+++.+++.+.+.|.+|. .++ .-.|. .+|...++.... ..+.+++|.+.+.+.+ +.+.+.+.
T Consensus 74 ~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~ 153 (174)
T PF04510_consen 74 YGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLR 153 (174)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 456677888999999999887773 233 34444 333333333321 3456777877776653 33445666
Q ss_pred HHHHHH
Q 000143 2023 DGLKQI 2028 (2058)
Q Consensus 2023 ~aL~~i 2028 (2058)
+||+.+
T Consensus 154 rgl~~~ 159 (174)
T PF04510_consen 154 RGLRDF 159 (174)
T ss_pred HHHHHH
Confidence 666543
No 307
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.24 E-value=1.1e+03 Score=33.75 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=55.6
Q ss_pred HhHHHHHHHh-----ccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1457 KLVLPSLLKG-----LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1457 ~~llp~Ll~~-----L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
..++..++.. ..|-....|..+++.||.+....|..+-.- ..+..+.-.|+|.+..||..+..+|..+.+.
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~d--sYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSD--SYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcc--hHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4455555443 457789999999999999999988765432 4455566689999999999999999999875
No 308
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.88 E-value=1.2e+03 Score=34.38 Aligned_cols=62 Identities=29% Similarity=0.309 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCCChhHHHHHH
Q 000143 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVC 1944 (2058)
Q Consensus 1883 l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~~~~vR~~a~ 1944 (2058)
++.+...++....+++...|..|+..+..+....|+.+ +|+.+|++.+.+.|.+..+-..+.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q 1603 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQ 1603 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHH
Confidence 44444555556788889999999999999999999985 689999999999988766655443
No 309
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=46.75 E-value=5.7e+02 Score=32.00 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=84.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCC--------------CHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ--------------VVAVREAAECA 1443 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~--------------~~~VR~aA~~a 1443 (2058)
..+..+.+.++.+.||++=.-.+.-+......-.-...+.+..+...+.+.+.|+ ..++......+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 4566677777777788765544433332222110001111445555555544442 23556666777
Q ss_pred HHHHHHh---hhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000143 1444 ARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1444 l~~l~~~---l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
|..++.. +++..-+.++..+..++.+ ++-..++.+|.-.+...|..+.+.++.|+..+.+...- +.+....+
T Consensus 221 Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt--~~~Ai~IL 295 (356)
T PF03542_consen 221 LSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT--PNMAIHIL 295 (356)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc--hhhHHHHH
Confidence 7776643 3334447788888888866 34456788888888888999999999988777655443 33444444
Q ss_pred HHHHHHH
Q 000143 1521 TALQQVG 1527 (2058)
Q Consensus 1521 ~aL~~l~ 1527 (2058)
+-|..++
T Consensus 296 EFLs~L~ 302 (356)
T PF03542_consen 296 EFLSSLS 302 (356)
T ss_pred HHHHHHh
Confidence 4444444
No 310
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=6.4e+02 Score=30.74 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=149.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh-H-hccCCcchH-HH
Q 000143 1225 LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK-H-LAKDDPKVH-AV 1301 (2058)
Q Consensus 1225 L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~-~-l~~~~p~i~-~i 1301 (2058)
-..++..+-...+++........+.-.--+-+.++..+|..+..++ .+-...+.++..-|- | .... ..++ .+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~----dlt~~~~~~v~~Ac~~hE~nrQ-~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESE----EVTLLTLQWLQKACIMHEVNRQ-LFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchH----HHHHHHHHHHHHHHHHhHHHHH-HHHHhhH
Confidence 3456666666666665554433221111234566667776633221 344555555555442 1 0000 0112 23
Q ss_pred HHHHHhhhCCCC--HHHHHHHHHhhHhhHhh-----c-cc---chH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1302 VDKLLDVLNTPS--EAVQRAVSSCLSPLMQS-----M-QD---EAP-----TLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365 (2058)
Q Consensus 1302 v~~Ll~~L~~~~--~~V~~av~~~L~~l~~~-----~-~~---~~~-----~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l 1365 (2058)
.+.+.+.|.... ..||. ...++..+... . +. ... ..+..+.+.+...-++.+-..+...|..+
T Consensus 191 l~Li~~~l~~~gk~~~VRe-l~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRE-LYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHcccCccHHHHH-HHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 444444554332 23443 43333333211 0 00 001 12233334333333344444444444444
Q ss_pred HhhhCc-cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-cchhhHH------HHHHHHHHHcCCCCHHHH
Q 000143 1366 VKGFGI-SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVI------QMLPLLLVAFSDQVVAVR 1437 (2058)
Q Consensus 1366 ~~~~g~-~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~-~~~p~l~------~llp~Ll~~l~D~~~~VR 1437 (2058)
+-.-.. ..+.+..=++.+...+.|..+...|+.+-.++..+..-.|. ..+..+. .++...+ ...| +|.|-
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~-~h~~-~p~Vi 347 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLAL-RHSD-DPLVI 347 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHH-HcCC-ChHHH
Confidence 321100 00001122556667777655667787777777666665563 3344332 2333333 2333 57777
Q ss_pred HHHHHHHHHHHHhhhhhh---HH-hHHHHHHHhcc-CC-ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCC
Q 000143 1438 EAAECAARAMMSQLSAQG---VK-LVLPSLLKGLE-DK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2058)
Q Consensus 1438 ~aA~~al~~l~~~l~~~~---v~-~llp~Ll~~L~-~~-~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~ 1511 (2058)
+.+..++..+.-..+.+. ++ ..-...++.+. .+ .-.+.+.+|+.+.+|+.....+-...+..=+..|+..-...
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~ 427 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN 427 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc
Confidence 777777777765555442 21 12223344454 22 34677889999999998766655555556666777777778
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 000143 1512 HPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~ 1529 (2058)
|+.++.+|-.+|..++-.
T Consensus 428 h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 428 HETCEAAAKAALRDLGCD 445 (461)
T ss_pred CccHHHHHHHHHHhcCcc
Confidence 899999999999888753
No 311
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.21 E-value=2.6e+02 Score=29.89 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=59.4
Q ss_pred HHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhcCC--CHH--HHH
Q 000143 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDS--ILE--VRE 1983 (2058)
Q Consensus 1909 Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~D~--d~~--VR~ 1983 (2058)
+.++++.- .....+.+..|.+-+...++++...+...+..++.++|......+. ..++..+.+.+.++ ++. ||+
T Consensus 29 icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~ 107 (140)
T PF00790_consen 29 ICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKE 107 (140)
T ss_dssp HHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHH
T ss_pred HHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHH
Confidence 44444432 2334567777888888899999998888888888888764322221 45667777765432 233 999
Q ss_pred HHHHHHHHHHHHhC
Q 000143 1984 SAGLAFSTLFKSAG 1997 (2058)
Q Consensus 1984 ~Aa~a~~~l~~~~g 1997 (2058)
.+...+.......+
T Consensus 108 k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 108 KILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99988888877764
No 312
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.87 E-value=2.2e+02 Score=30.22 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=53.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQ--VVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~D~--~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.+..|...+.+. ++.+-..|+..++.+...+|..|...+. ..+..+...+.+. .+.|++.+...+......+.
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 6677788888875 8888888999999999999987765543 3566666665553 23488888777777665553
No 313
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.76 E-value=1.7e+02 Score=33.67 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=75.5
Q ss_pred hhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHhhhCccccchhchHHHHHH
Q 000143 1307 DVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA-AFGLAGVVKGFGISSLKKYGIAATLRE 1385 (2058)
Q Consensus 1307 ~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~A-a~~L~~l~~~~g~~~l~~~~il~~L~~ 1385 (2058)
....++..+.+..+..++.+...... ...++.+-.-+..-++|.+.... ...++.+.... ....+.+.+
T Consensus 58 ~L~~~~~~E~~~la~~il~~~~~~~~---~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-------~~~~~~~~~ 127 (213)
T PF08713_consen 58 ELWESGYREERYLALLILDKRRKKLT---EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH-------PEALELLEK 127 (213)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCGGG-----HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------GGHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHhHHHhhhhh---HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------HHHHHHHHH
Confidence 34455666666655555544332211 12233333333345678776665 44445544332 256788888
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1386 ~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
.+.++..|..|-+.+..+. . .. ..+...++..+...+.|++..||.+...+|..++...+
T Consensus 128 W~~s~~~w~rR~~~v~~~~-~---~~---~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 128 WAKSDNEWVRRAAIVMLLR-Y---IR---KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHCSSHHHHHHHHHCTTT-H---GG---GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHhCCcHHHHHHHHHHHHH-H---HH---hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 8988855655554433221 1 11 25667788888888999999999999999999876544
No 314
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=42.43 E-value=3e+02 Score=29.50 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=52.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHH-HHHHcCC---CCHHHHHHHHHHHHHHHHhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFSD---QVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~-Ll~~l~D---~~~~VR~aA~~al~~l~~~l 1451 (2058)
+.+..|...+...+++++-.-|+..++.+.+.+|..|...+. ..+.- +...+.+ ....|+......+......+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 567777777765447887777899999999999987765543 34543 4455442 34578888877777776555
Q ss_pred h
Q 000143 1452 S 1452 (2058)
Q Consensus 1452 ~ 1452 (2058)
.
T Consensus 118 ~ 118 (141)
T cd03565 118 R 118 (141)
T ss_pred C
Confidence 4
No 315
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=42.23 E-value=5.9e+02 Score=29.28 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHhcccchhh
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLA-FECLCEKLGRLFEPY 1417 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~a-l~~L~~~lg~~~~p~ 1417 (2058)
...+...|.++.-.+.|..|..-+....+... ..-++.+...+.+..+|..-+....- ++.+. -.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~--------~~ 112 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLT------PEDLPLLEELITTKSWWDTVDSLAKVVGGILL--------AD 112 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHHH--------hC
Confidence 33444445544433445555443433222221 12355566666666678765543221 11111 11
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
-....+.+..-..|++.-+|.+|+-+.-..... ...+.+...+...+.|+++-++++.-.+|..++...|+.+..++
T Consensus 113 ~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 113 YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 123356677778899999999887653333222 22345555666677888999999999999999888777665554
No 316
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.07 E-value=28 Score=28.68 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLA 1988 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a 1988 (2058)
+.+...+...+.|+++.||++|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788889999999999999999764
No 317
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.95 E-value=6.8e+02 Score=29.65 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=65.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCCh--hHHH--HHHHHHHHHHHhhChhhhHhHHhhHHHHH
Q 000143 1895 ASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA--SRRQ--GVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2058)
Q Consensus 1895 ~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~--~vR~--~a~~aL~eii~~~~~~~l~~~~~~ll~~L 1970 (2058)
.++++..-..|...|+++-. ...+|.+.+.++-++. ..-. .+..-++.++.+.+.. =+..+
T Consensus 52 ~~~~~~~~~~a~~LLaq~re-------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G--------~~~~L 116 (249)
T PF06685_consen 52 DDEEYNLHFYALYLLAQFRE-------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDG--------DIEPL 116 (249)
T ss_pred cCcchHHHHHHHHHHHHHhh-------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCC--------CHHHH
Confidence 34455545566667766632 3455556665542221 1111 1222344444444322 23456
Q ss_pred HHHhcCCC--HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCC--CcchHHHHHHH-HHHHhhcCCccchh
Q 000143 1971 RTALCDSI--LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGL-KQILSVRTTAVLPH 2039 (2058)
Q Consensus 1971 ~~~L~D~d--~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~--~~~~~~al~aL-~~i~~~~~~~~lp~ 2039 (2058)
.+.+.|++ .-||.+|..|+..+... |+...++++..+-..+.. ....+.+...| ..++.-++...+|.
T Consensus 117 ~~li~~~~~~~yvR~aa~~aL~~l~~~-~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~ 189 (249)
T PF06685_consen 117 KELIEDPDADEYVRMAAISALAFLVHE-GPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPE 189 (249)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHH
Confidence 66676664 55999999999999864 443344444444433332 11122333333 45555566666664
No 318
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=39.66 E-value=1e+02 Score=29.99 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=52.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~ 1446 (2058)
+++.-+...+.+..+..+|+..+.++..+....|..+..-...++..+-....|+++.+-..|.+++..
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 344444555555558899999999999999988877777777888888888888888887777776653
No 319
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=39.28 E-value=7.2e+02 Score=29.46 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred chHHHHHhhcccCCChHHHh---hHHHHHHHHHHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhc
Q 000143 1657 DLVSWLLDALKSDNSNVERS---GAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG 1728 (2058)
Q Consensus 1657 ~llp~L~~~L~~d~~~~~R~---~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g 1728 (2058)
+.+|.+++.++.+.+..... .....++.+...+|....+. +.+.+.++ +..+|.+++.++..+...-.
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~----L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEP----LKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHH----HHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 46677777776544331111 23444555555555433332 33445555 68899999999998876543
No 320
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.85 E-value=5.4e+02 Score=27.61 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=55.7
Q ss_pred hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC
Q 000143 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALC-DSILEVRESAGLAFSTLFKSAG 1997 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~-D~d~~VR~~Aa~a~~~l~~~~g 1997 (2058)
-.+.+-.|.+-++++++.+..-+...|..++.++|......+. ..++..+.+.+. ..++.|++.+...+.......+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3456667777788888888888888888888888764322222 456666666664 5788999999988888876654
No 321
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=37.74 E-value=1.8e+02 Score=35.70 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh--hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~--L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+..+.++++..+..+-.-|+.++++++..|++.+... -......+..++. ..|+.|++.....+...++.+.+
T Consensus 47 lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 47 LKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 3444456666666666677777777777777654332 2345555666666 56899999988888888887764
No 322
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=37.07 E-value=9.5e+02 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=21.0
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
|+.++..|+-..++ ..+.+.....-..+|.++..+++
T Consensus 66 Y~g~~~k~i~p~l~-~~~se~l~~~Y~~lg~lvk~c~~ 102 (373)
T PF14911_consen 66 YFGDFEKWIKPYLK-SKSSEGLQRIYRVLGILVKHCSP 102 (373)
T ss_pred HHHHHHHHcCCccc-cCCHHHHHHHHHHHHHHHHhcch
Confidence 55566666655553 23333444555667777777765
No 323
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.65 E-value=3.4e+02 Score=28.78 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhc
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADEN--ESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~--~~VR~~a~~al~~lv~~~~ 1769 (2058)
-.+.+..|...+.++++.+...++.++..+....|..|...+ ..++..+...+.+.. +.|++.++..+......|.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 346677778888899999999999999999999999886544 346777777666543 3488888887777766664
Q ss_pred c
Q 000143 1770 T 1770 (2058)
Q Consensus 1770 ~ 1770 (2058)
.
T Consensus 115 ~ 115 (133)
T smart00288 115 N 115 (133)
T ss_pred C
Confidence 3
No 324
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=36.65 E-value=1.2e+02 Score=30.57 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=49.5
Q ss_pred hhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHhcCC
Q 000143 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALED 2014 (2058)
Q Consensus 1956 ~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~----~~~~ilp~Ll~~L~~ 2014 (2058)
++.+.||.+.++..+..++..-.++||.-|...++.+.++.|.. +...+++.++..|..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999999988754 345778887777764
No 325
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=36.23 E-value=1e+02 Score=33.65 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---cch--hhchHHHHhhhc
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG---ERV--LPSIIPILSRGL 1932 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg---~~~--l~~llp~L~~~l 1932 (2058)
..+|..+.-++..+....+..+.+.+..++..++ .+.+.+....+..++..+..... ... -+.+++.+....
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~---~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREEFKEKISDFIESLL---DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 3467777666666654445555555555554443 33333345556666665543221 111 245556555555
Q ss_pred C--CCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhc-CCCHH-HHHHHHHHHH
Q 000143 1933 K--DPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALC-DSILE-VRESAGLAFS 1990 (2058)
Q Consensus 1933 ~--d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~-D~d~~-VR~~Aa~a~~ 1990 (2058)
. .++......++..+ ...+..+....+. ..-++.|.+... +++.. +|..|+-++.
T Consensus 96 ~~~~~~~~~~~~~lell---~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELL---SAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp H-CTS-HHHHHHHHHHH---HHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHH---HHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4 33444444454433 2344444434433 666778888884 55555 7888876654
No 326
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=35.69 E-value=1.4e+02 Score=28.92 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=49.4
Q ss_pred HhhHHHHHhh-ccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000143 1696 HILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2058)
Q Consensus 1696 ~llp~Ll~~l-~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~ 1762 (2058)
.++..+...+ ..++..+|+..+.|+..+....|.....=.+.++..+-....|.++.+-..|..++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444444443 345889999999999999998888777767777888877788877777777766554
No 327
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.14 E-value=2e+02 Score=29.83 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=56.4
Q ss_pred hHHhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-CCcc
Q 000143 1961 SFMDELIPTIRTALC-DSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR-TTAV 2036 (2058)
Q Consensus 1961 ~~~~~ll~~L~~~L~-D~d~~VR~~Aa~a~~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~-~~~~ 2036 (2058)
.++..++|.+.+.+. ...+|.|-++--.++.+..... +..++.++..++...........++-+|..++..+ +...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVDS 81 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHccccccc
Confidence 466889999999998 7788888888888888876553 23444555555544444332256888888888776 4444
Q ss_pred ch-hhhhhhccC
Q 000143 2037 LP-HILPKLVHL 2047 (2058)
Q Consensus 2037 lp-~lip~L~~~ 2047 (2058)
+| ..+..|...
T Consensus 82 lp~~~~~~l~~~ 93 (121)
T PF12397_consen 82 LPRKVFKALLKL 93 (121)
T ss_pred CCHHHHHHHHcC
Confidence 44 244444443
No 328
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.81 E-value=44 Score=24.99 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCC
Q 000143 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1514 ~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d 1548 (2058)
.||..|..+|++++. +..++.|.+.+.|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 689999999999854 2345556666655
No 329
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.68 E-value=8.8e+02 Score=28.53 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=40.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
+++|.++.|.+.++.|...+-. .+++.+ ..+.......+.+. .+-..+...+.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~------------~~~~~i-~~~~~~~~~W~~~~--------------~lK~~Il~~~~ 53 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYP------------LVFRWI-CVNPSDEQLWESMN--------------ELKDRILSLWD 53 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHH------------HHHHHH-S--HHHHHHHHHHH--------------HHHHHHHHGGG
T ss_pred CCCCCcHHHHHHHHHHHHHHHH------------HHHHHH-cCCchHHHHHHHHH--------------HHHHHHHHHhc
Confidence 4688899999999988877643 333333 11111222222221 12233444466
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 000143 1587 ERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
+.++.+|..+.+.+..+.-.
T Consensus 54 ~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHh
Confidence 66778888888887776553
No 330
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.42 E-value=54 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D 1510 (2058)
|.+|..++.+||.+.. +..++.|.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 6789999999998732 3556677777776
No 331
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.35 E-value=8.9e+02 Score=28.49 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhh-----h-------hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1429 FSDQVVAVREAAECAARAMMSQLSA-----Q-------GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1429 l~D~~~~VR~aA~~al~~l~~~l~~-----~-------~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
++|+++.|.+.++.|...+....=. . .+..+-..++..+++.++.+|..++..+..+.-.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 5677888877777777665433111 0 1233445566777888899999999998887743
No 332
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.05 E-value=21 Score=26.26 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc
Q 000143 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l 1546 (2058)
||.+|.++|++++. +.-+|.|++.+
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHh
Confidence 78999999999876 33455555444
No 333
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=31.99 E-value=8.6e+02 Score=28.91 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC---------hhhHhhhhh
Q 000143 1433 VVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA---------PQQLSQCLP 1498 (2058)
Q Consensus 1433 ~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~---------p~~l~~~L~ 1498 (2058)
-+.+|-+....++.+++.-+++.+ ..++|.++..++..+.-.|..|...+..+.... ++.+. .+.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHH
Confidence 467899999999999876666654 478999999999888888988888888776431 12222 112
Q ss_pred hHHHHH-HHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1499 KIVPKL-TEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1499 ~Iip~L-~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
.++..+ ..+..++++++=+..+.|.-++++
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 222222 223445566666666666666554
No 334
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=30.46 E-value=13 Score=45.18 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000143 842 RELLLNEEASIREKVQGV 859 (2058)
Q Consensus 842 ~~~QL~kE~~IR~~v~~~ 859 (2058)
++++++||..+|.+.++.
T Consensus 561 ~qkr~kkEkk~k~k~qe~ 578 (641)
T KOG3915|consen 561 VQKRLKKEKKAKRKLQEA 578 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777777654
No 335
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=29.99 E-value=5.1e+02 Score=31.82 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhh--HHHHHHHHh---cCCCHHHHHHHHHHHHHHHhh
Q 000143 1463 LLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK--IVPKLTEVL---TDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1463 Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~--Iip~L~~~L---~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
+...+. +.+.|++.+-+.+|..+.+.+|......|.. .++.|+... .+.++.||.-++--||-..+.
T Consensus 160 L~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 160 LIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp TTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 334444 5679999999999999999999876665533 555555543 345688888777777766553
No 336
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=29.99 E-value=78 Score=31.01 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
..|++++.+++.+....+-.+-+|+..++..|-....| ...|+..+-+++..+-+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 57899999999999988877888999999998888886 66788888888877743
No 337
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=29.96 E-value=4.4e+02 Score=29.89 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hHHhHHHHHHHhccC-----CChHHHHHHHHHHHHHHhhC
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCA 1489 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v~~llp~Ll~~L~~-----~~~~~R~~a~~~Lg~la~~~ 1489 (2058)
++.+++..+++...+.=+.||..|..++..+.....+. .++ -.+.+.+.+.. .+|..-..+...+..+...
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~- 81 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL- 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc-
Confidence 44556666666666666889999999999998333221 111 22344443332 2366554444444444321
Q ss_pred hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc--CchhHHhHHHHHHhccCC
Q 000143 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1490 p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~--~~~~i~~lvp~Ll~~l~d 1548 (2058)
..|...++..++-.....+..+.+.+..+|-.+.... .......++..++..+.+
T Consensus 82 ----~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 82 ----PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred ----HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 1344455555555566667777788888887777532 223445666666665544
No 338
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=29.88 E-value=1.5e+03 Score=30.34 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~ 1768 (2058)
...++..++.++.... -...++..+..+.-+.++.||..|..+++.++...
T Consensus 452 f~t~i~aiPrcL~~~i--~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 452 FRTCIQAIPRCLPSSI--PFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred HHHHHHHccccCCCCC--cHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 4455566666666533 23678899999999999999999999999998765
No 339
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=29.60 E-value=1.2e+03 Score=30.47 Aligned_cols=233 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-----hhhhhHHhHHHHHHHhccCCChHHHHH---HHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-----LSAQGVKLVLPSLLKGLEDKAWRTKQS---SVQLLGAM 1485 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~-----l~~~~v~~llp~Ll~~L~~~~~~~R~~---a~~~Lg~l 1485 (2058)
|.|+.+.++........-.+|.++--+.-|+...... -..+.--.+.|.++..+.+.....|.. -..++...
T Consensus 287 f~p~lDeli~~~~e~tpmnnPvl~lL~Ifcv~~~~~acLSlpQ~~e~~~~~t~k~I~~F~eS~e~~rllll~~~ll~n~~ 366 (743)
T COG5369 287 FYPLLDELIQYRKESTPMNNPVLVLLGIFCVQDDVQACLSLPQLFEKDIELTSKIIDRFHESKESERLLLLTPELLFNMY 366 (743)
T ss_pred hcccHHHHHHHHHhhccccCchheehhHHHHHHHHHHHhccchhcchheeehHHHHHHHHhcChhhhhhhcCHHHHHhHH
Q ss_pred HhhChhhHhhhhhhHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHhhcC--chhH--HhHHHHHHhccCCCChh
Q 000143 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTH---------PKVQSAGQTALQQVGSVIK--NPEI--ASLVPTLLMGLTDPNDH 1552 (2058)
Q Consensus 1486 a~~~p~~l~~~L~~Iip~L~~~L~D~~---------~~VR~aA~~aL~~l~~~~~--~~~i--~~lvp~Ll~~l~d~~~~ 1552 (2058)
-........+.+-..-..+.+....++ ..--.+++.+|..+...+. ...+ ..++..|++++.+|+-.
T Consensus 367 e~~~~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peim 446 (743)
T COG5369 367 ELTAGLEENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIM 446 (743)
T ss_pred HHhhhhhhhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccce
Q ss_pred HH-HHHHHHHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC
Q 000143 1553 TK-YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2058)
Q Consensus 1553 vr-~al~~L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~ 1629 (2058)
+. .+...+.. ..|.+--..--...++.++...+...+...|......+-.+.-.......+.+....=+..+....+
T Consensus 447 i~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N 526 (743)
T COG5369 447 IEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN 526 (743)
T ss_pred eeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc
Q ss_pred CCCHHHHHHHHHHHHHH
Q 000143 1630 DPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1630 d~~~~vR~~a~~aLg~l 1646 (2058)
||.|.|.+.....+-.+
T Consensus 527 Dpc~~vq~q~lQilrNf 543 (743)
T COG5369 527 DPCFKVQHQVLQILRNF 543 (743)
T ss_pred CcccccHHHHHHHHHhc
No 340
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=28.67 E-value=84 Score=29.46 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhh-hCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000143 1354 ERRGAAFGLAGVVKG-FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2058)
Q Consensus 1354 vR~~Aa~~L~~l~~~-~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~ 1409 (2058)
..++|..+++.+... .|...+...++++.+.+...+...+..|-.+..+++.++.+
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 357888999988764 56666666689999999988877899999999999998864
No 341
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.07 E-value=8e+02 Score=26.28 Aligned_cols=76 Identities=8% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHhhHHHHHhhc-cCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHH-HHHhccC---CCHHHHHHHHHHHHHHHHH
Q 000143 1695 EHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPA-ILDGLAD---ENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1695 ~~llp~Ll~~l~-~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~-Ll~~L~d---~~~~VR~~a~~al~~lv~~ 1767 (2058)
.+.+..|...+. +.++.+...++.++..+.+..|..|...+ ..++.. |.+.+.+ ....|+..++..+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 456666667776 46888888899999999999999886544 245554 5666542 3457888888877777666
Q ss_pred hcc
Q 000143 1768 YAT 1770 (2058)
Q Consensus 1768 ~~~ 1770 (2058)
|..
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 643
No 342
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.88 E-value=3.5e+02 Score=27.93 Aligned_cols=72 Identities=24% Similarity=0.363 Sum_probs=39.5
Q ss_pred chhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh-cCCCHH-HHHHHHHHHHHHHHH
Q 000143 1919 RVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILE-VRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1919 ~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L-~D~d~~-VR~~Aa~a~~~l~~~ 1995 (2058)
++++.++|.+.+++. +..++.|.++..-++.+....+- -+.++..+.+.+ .+..+. ....+..++..+++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL------SDEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 356778888888887 55677777666556655544321 133333333322 222221 135566777777755
Q ss_pred h
Q 000143 1996 A 1996 (2058)
Q Consensus 1996 ~ 1996 (2058)
-
T Consensus 76 q 76 (121)
T PF12397_consen 76 Q 76 (121)
T ss_pred c
Confidence 4
No 343
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=25.55 E-value=3.9e+02 Score=29.29 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVL-MNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L-~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
+..+-+.|+.++..++.+.+.....+-..+ ++.++..+.+++.+++..|...+-.+..+.+
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 456778899999999987765444443333 5667777888999998888877777665544
No 344
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.61 E-value=3.9e+02 Score=29.30 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=67.0
Q ss_pred hhhhhHHHHHHHHHHhcCCCCChhhHhhhhhhhhc--cChhhhhhcchhhhhHhhhcChHHHHHHHHHhhhcCCCChHHH
Q 000143 208 KCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTH--MSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKY 285 (2058)
Q Consensus 208 ~~k~~~~~~y~k~vl~sK~~~~~~~~~~~~~~~~~--~t~~df~~~ilP~leKalLRsPE~~l~~~~~l~~~~~~dls~~ 285 (2058)
...+.|++--.+.+++.+..|..+..+.+....+. ++-.|..+.|-..++-...-.++++...+..+++=+++. .-
T Consensus 51 ~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s--~~ 128 (158)
T PF14676_consen 51 MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS--PS 128 (158)
T ss_dssp GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--HH
Confidence 34567888888889998888888889999998885 466677888888888887788888766655555433222 22
Q ss_pred H-HHHHHHHHhhhccCcHHHHHHHHHHH
Q 000143 286 A-TEILSVVLSQVRHADEGRKTGALTII 312 (2058)
Q Consensus 286 ~-~~l~~~l~s~lkS~~~~vR~~a~~~~ 312 (2058)
. ..++..+=..+.|.+...|.-|+.-|
T Consensus 129 lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 129 LRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 2 33666666677788888888887754
No 345
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=24.26 E-value=1.1e+02 Score=24.21 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1966 LIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1966 ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
.++.|.+++..++++++..|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888888889999999999998764
No 346
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.72 E-value=1.3e+03 Score=30.53 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-
Q 000143 1414 FEPYVIQMLPLLL-VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll-~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p- 1490 (2058)
+..++..+...++ ..+.|-++.+|..+...++.....+|.+-. -..+...-=.|.|.+-.+|......+..++...|
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~ 347 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPH 347 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCc
Q ss_pred -hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hcCchhHHhHHHHHHhccCCCChhHHHHHHHHHh
Q 000143 1491 -QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2058)
Q Consensus 1491 -~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~--~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~ 1562 (2058)
+.+...+......+++.+.-...-||..+.+.+..+.. .+.+.++.-+...++...-|+....++++..+..
T Consensus 348 ~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 348 TDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred chHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
No 347
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=23.39 E-value=1.5e+02 Score=32.39 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000143 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAI 875 (2058)
Q Consensus 842 ~~~QL~kE~~IR~~v~~~~~~l~~~~~~i~~l~~ 875 (2058)
.+.+++||.+||++++.+...++.....|+.+-.
T Consensus 11 ~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~ 44 (226)
T KOG3067|consen 11 LQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQ 44 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999888888764
No 348
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.24 E-value=9.1e+02 Score=26.50 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcccch------hhH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hHHh
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFE------PYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~------p~l----~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v~~ 1458 (2058)
+...|.-++..+..+.+..|..|. .+. ..+.+.++..+..+++.+-..+.+.+..+...+..+ .+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888776555 222 357788887776666888888888888888777654 2356
Q ss_pred HHHHHHH-hccCC--ChHHHHHHHHHHHHHHh
Q 000143 1459 VLPSLLK-GLEDK--AWRTKQSSVQLLGAMAY 1487 (2058)
Q Consensus 1459 llp~Ll~-~L~~~--~~~~R~~a~~~Lg~la~ 1487 (2058)
+++.+.. .++.+ .+..|..+++.+..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6676666 44433 34588889999998885
No 349
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.18 E-value=1e+03 Score=26.15 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHH----hcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-hh-H--HhHHHHHHHhcc
Q 000143 1397 EGALLAFECLCEK----LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QG-V--KLVLPSLLKGLE 1468 (2058)
Q Consensus 1397 ~~al~al~~L~~~----lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~~-v--~~llp~Ll~~L~ 1468 (2058)
.-++.+|..+++. +...-.+|+.++...+-... .+..+-..|...+..++.+-+. +. | +.-++.++..|+
T Consensus 35 a~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~--~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq 112 (160)
T PF11841_consen 35 AYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSA--MDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQ 112 (160)
T ss_pred HHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccc--ccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHH
Confidence 3456666666663 11223456666666554222 2577888888888888876544 32 2 345788888898
Q ss_pred CCChHHHHHHHHHHHHHHhhChhh
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~ 1492 (2058)
..+...+..++.++.++...+++.
T Consensus 113 ~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 113 VSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cCCHHHHHHHHHHHHHHHhcCChH
Confidence 888999999999999888777654
No 350
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=22.56 E-value=1.2e+03 Score=27.58 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHhhChh-------h-HhhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhcC---chhH---
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQ-------Q-LSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK---NPEI--- 1535 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~-------~-l~~~L~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~---~~~i--- 1535 (2058)
.|+.=+.+..+++.++...+. . -...+..+-..++..| +=.|.-+=.++..++..++..+. ++.+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 377777777778877754321 0 1123334444444443 33566666777777887777654 3333
Q ss_pred -HhHHHHHHhccCCC
Q 000143 1536 -ASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1536 -~~lvp~Ll~~l~d~ 1549 (2058)
...+..++..+...
T Consensus 140 P~~WL~~~l~~i~~~ 154 (255)
T PF10350_consen 140 PEEWLDELLEAIESK 154 (255)
T ss_pred HHHHHHHHHHHHhcc
Confidence 33455555555555
No 351
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.50 E-value=3.8e+02 Score=27.06 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1475 KQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~--l~~~L~~Iip~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
|...+.++|.+++..+.. ....+.. +|.++... .|.+|-+|+-|+.|+..+++. +++-+.++..|
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~--n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEG--NPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhC--CHHHHHHHHhc
Confidence 566788899999877642 1222233 55555543 467899999999999999874 44444444433
No 352
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=21.30 E-value=2.8e+03 Score=30.65 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHHHHhhccc-CccchHHHHHhhcccCCChHHHhhHHHHHHH--HHHHhchhHHHHhhHHHHHhhc-c
Q 000143 1632 IPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAAQGLSE--VLAALGTVYFEHILPDIIRNCS-H 1707 (2058)
Q Consensus 1632 ~~~vR~~a~~aLg~l~~~lg~~-~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~--i~~~~g~~~l~~llp~Ll~~l~-~ 1707 (2058)
+.+.-....+++..+....|.. ..++.+..+...+.+|.....|++.+-++.. +.+......+.++|..+-+.+. +
T Consensus 864 ~~el~q~~~k~~t~lI~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r~i~~~eL~~imd~v~e~~v~~ 943 (1364)
T KOG1823|consen 864 NFELCQDSFKGFTALIAQVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSRKIMLPELYEIMDKVRETMVRN 943 (1364)
T ss_pred cHHHHHHHHHHHHHHHHHhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhc
Confidence 3456677788888888887774 4467888888888877666678877665532 2222222234455555444332 2
Q ss_pred CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCC
Q 000143 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2058)
Q Consensus 1708 ~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~ 1787 (2058)
.....|..+-..+-..-. .+....|++...+..++-......+.||....- +.+.+... .+|-..-.+.|+
T Consensus 944 ~~~~~r~qcre~~~~~~~-s~s~~~k~~~~~V~~l~~~~esg~esvr~~~al----l~e~~~~f----fIal~~~~~nDd 1014 (1364)
T KOG1823|consen 944 HSKEIRLQCREVFYSFLG-SKSKLEKQMEFMVDNLLYEVESGRESVRFSPAL----LFEILSNF----FIALVLVKINDD 1014 (1364)
T ss_pred ccchHHHHHHHHHHHHHh-hcchhhHHHHHHHHHhhhhhhcccchhcccHHH----HHHHhhcc----chhhcccccccc
Confidence 233334433332211111 344566777777777777666666777722211 11222222 233222334555
Q ss_pred CHHHHHHHHHHHHHH
Q 000143 1788 NWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1788 ~~~vR~sav~ll~~L 1802 (2058)
....|..+...+..+
T Consensus 1015 ~~~~r~ma~~~i~~~ 1029 (1364)
T KOG1823|consen 1015 EPVCREMASMLIKVL 1029 (1364)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666677666555544
No 353
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.98 E-value=4.9e+02 Score=29.56 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred hhHhhhcChHHHHHHHHHhhhcCCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 000143 256 SIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP-DALEAMFYAIKA 334 (2058)
Q Consensus 256 leKalLRsPE~~l~~~~~l~~~~~~dls~~~~~l~~~l~s~lkS~~~~vR~~a~~~~~~l~~~~~d~-~~~~~~~~~i~~ 334 (2058)
+.|.+++.+=.++....++-...+=+...+..+....+++.||+..+.++. .-..++.++.+--+| -+.+-+.+ -
T Consensus 3 m~k~l~~~~ll~~a~a~~~~~~~~~~~~~~v~~~a~~~ls~lk~~~~~~k~-dp~~l~~~v~~~l~p~vd~~~~a~---~ 78 (202)
T COG2854 3 MKKSLTILALLVIAFASSLAAAAPANPYSLVQEAADKVLSILKNNQAKIKQ-DPQYLRQIVDQELLPYVDFKYAAK---L 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHhccchhhcc-CHHHHHHHHHHHhhhhhcHHHHHH---H
Confidence 345666655444433333334446677777888999999999999765554 222233333321111 01111211 2
Q ss_pred hcCCCCCccccHHHHHHHHHHHHhh
Q 000143 335 VIGGSEGRLAFPYQRIGMVNALQEL 359 (2058)
Q Consensus 335 ~l~~~~gkl~~~~~R~~~~~~l~~l 359 (2058)
+|+ +|=|.++|+||-....+.+..
T Consensus 79 vLG-k~~k~aspeQ~~~F~~aF~~y 102 (202)
T COG2854 79 VLG-KYYKTASPEQRQAFFKAFRTY 102 (202)
T ss_pred Hhc-cccccCCHHHHHHHHHHHHHH
Confidence 343 778899999999998888543
No 354
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.45 E-value=4.6e+02 Score=26.69 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=47.4
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~ 1991 (2058)
+.+...+.+.+....+..|..+.+.+..++.+++...-..+...+.+.+.......++.+|+.....++.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~i 105 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555556666666667888999999999998887654333334446666667777788888766555544
No 355
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.30 E-value=5.4e+02 Score=35.34 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHhccCcc
Q 000143 344 AFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410 (2058)
Q Consensus 344 ~~~~~R~~~~~~l~~l~~~~~~~~~~~~s~~i~~~l~~~~~kE~~E~~l~~~l~al~~~~~~~~~~~ 410 (2058)
..+++|...+..++.+-..-+..-..-+...+...+..++..+.+..++..++.+|...+-.....+
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 4467899999999777654332222233446888899999999999999999998877666544333
No 356
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.29 E-value=1.1e+03 Score=26.68 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
+...++..+++...+.-+.||..|..++..+.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777889999999999887
No 357
>PTZ00121 MAEBL; Provisional
Probab=20.06 E-value=99 Score=43.82 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCc
Q 000143 837 AKEEARELLLNEEASIRE--KVQGVQRNLSLMLSALGEMAIANP 878 (2058)
Q Consensus 837 ~k~~~~~~QL~kE~~IR~--~v~~~~~~l~~~~~~i~~l~~~~~ 878 (2058)
+||.+++.+|+.|++=|. +-+.+...+.+--.|+.+.+..|.
T Consensus 1776 QQEAaLedgLeaE~e~rs~aR~QqV~dEVdkY~AIIeqrIQqNL 1819 (2084)
T PTZ00121 1776 EKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819 (2084)
T ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 444556667777774443 445566667777777777776553
No 358
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.01 E-value=9.8e+02 Score=29.87 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=69.3
Q ss_pred HHHHHHHhCcch--hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhc-CCCHHHHHH
Q 000143 1909 LGELVRKLGERV--LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALC-DSILEVRES 1984 (2058)
Q Consensus 1909 Lg~L~~~lg~~~--l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~-D~d~~VR~~ 1984 (2058)
+-++|..+|.+. -...+..+.+.++..++.+-.-+..-++.+..+||.......- ..+...|+..+. ...+.|++.
T Consensus 29 IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 29 ILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHH
Confidence 446666666543 3567778888888889988888888888888888764322221 455666777776 567888888
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhcC
Q 000143 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013 (2058)
Q Consensus 1985 Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~ 2013 (2058)
-...+..+...+-.+.-=.+++.|...|.
T Consensus 109 ~~~lv~eWsee~K~Dp~lsLi~~l~~klk 137 (462)
T KOG2199|consen 109 MRDLVKEWSEEFKKDPSLSLISALYKKLK 137 (462)
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 87777777665543322245566665553
Done!