Query 000143
Match_columns 2058
No_of_seqs 575 out of 3207
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 1.7E-39 5.7E-44 472.6 74.7 888 1132-2046 8-1111(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1.2E-37 4.2E-42 453.0 74.3 955 1056-2038 5-1140(1230)
3 2bpt_A Importin beta-1 subunit 100.0 8.8E-37 3E-41 429.3 76.5 743 1133-1995 7-858 (861)
4 4fdd_A Transportin-1; heat rep 100.0 8E-36 2.8E-40 417.5 73.9 725 1133-1945 16-817 (852)
5 2bpt_A Importin beta-1 subunit 100.0 2.5E-36 8.6E-41 424.7 68.1 753 1055-1916 2-859 (861)
6 4fdd_A Transportin-1; heat rep 100.0 1.1E-35 3.8E-40 416.1 73.6 719 1251-2041 11-795 (852)
7 1qgr_A Protein (importin beta 100.0 3.8E-35 1.3E-39 413.5 73.6 745 1133-1995 4-872 (876)
8 1b3u_A Protein (protein phosph 100.0 2.5E-35 8.6E-40 395.7 52.1 564 1339-1993 12-586 (588)
9 1qgr_A Protein (importin beta 100.0 1.3E-32 4.5E-37 387.6 73.6 714 1275-2032 16-873 (876)
10 1b3u_A Protein (protein phosph 100.0 1E-32 3.6E-37 370.2 52.1 556 1223-1802 17-585 (588)
11 2iw3_A Elongation factor 3A; a 99.9 2.8E-22 9.7E-27 268.4 30.4 310 1338-1652 15-328 (986)
12 1wa5_C Importin alpha RE-expor 99.9 1.8E-18 6.3E-23 244.1 60.7 649 1057-1769 5-794 (960)
13 2x1g_F Cadmus; transport prote 99.9 5.2E-19 1.8E-23 250.9 54.2 720 1057-1915 7-859 (971)
14 2x19_B Importin-13; nuclear tr 99.9 6E-18 2E-22 240.2 63.0 714 1057-1917 24-849 (963)
15 1wa5_C Importin alpha RE-expor 99.9 1.7E-18 5.7E-23 244.5 56.8 707 1134-1976 9-869 (960)
16 1ibr_B P95, importin beta-1 su 99.9 2.9E-19 9.8E-24 231.7 37.2 396 1133-1547 4-461 (462)
17 1ibr_B P95, importin beta-1 su 99.8 1.9E-18 6.6E-23 223.9 36.4 390 1585-2013 10-461 (462)
18 3m1i_C Exportin-1; heat repeat 99.8 2.5E-15 8.7E-20 213.8 60.8 789 1052-1993 11-928 (1049)
19 3now_A UNC-45 protein, SD10334 99.8 4.1E-15 1.4E-19 197.5 54.7 513 1314-1873 218-782 (810)
20 2x1g_F Cadmus; transport prote 99.8 6.3E-15 2.2E-19 209.0 60.6 743 1191-2044 54-920 (971)
21 2x19_B Importin-13; nuclear tr 99.8 2E-13 6.8E-18 193.7 72.8 766 1133-2038 27-902 (963)
22 2vgl_B AP-2 complex subunit be 99.8 1.1E-15 3.9E-20 203.2 45.8 473 1379-1912 50-530 (591)
23 3now_A UNC-45 protein, SD10334 99.8 1.8E-14 6.1E-19 191.5 56.5 658 1337-2031 6-783 (810)
24 4hat_C Exportin-1; heat repeat 99.8 2.8E-13 9.4E-18 188.1 66.0 783 1048-1979 7-913 (1023)
25 3ibv_A Exportin-T; karyopherin 99.8 2.3E-13 7.8E-18 189.0 65.1 621 1056-1771 5-773 (980)
26 2vgl_B AP-2 complex subunit be 99.8 1.6E-15 5.6E-20 201.8 42.0 503 1223-1764 20-530 (591)
27 2jdq_A Importin alpha-1 subuni 99.7 5.3E-15 1.8E-19 190.9 35.4 344 1380-1727 22-392 (450)
28 2z6g_A B-catenin; FULL-length, 99.7 2.1E-14 7.2E-19 196.7 42.5 506 1422-1998 117-667 (780)
29 2jdq_A Importin alpha-1 subuni 99.7 5.5E-15 1.9E-19 190.7 34.6 379 1422-1803 22-442 (450)
30 2z6g_A B-catenin; FULL-length, 99.7 2.9E-14 9.8E-19 195.3 40.7 492 1302-1803 117-662 (780)
31 1wa5_B Importin alpha subunit; 99.7 8.8E-15 3E-19 193.0 33.9 381 1420-1803 87-509 (530)
32 4b8j_A Importin subunit alpha- 99.7 4.3E-14 1.5E-18 186.4 37.8 388 1338-1764 75-494 (528)
33 4b8j_A Importin subunit alpha- 99.7 3.5E-14 1.2E-18 187.2 36.5 381 1420-1802 74-494 (528)
34 3gjx_A Exportin-1; transport, 99.6 5E-11 1.7E-15 164.2 65.6 779 1049-1978 20-936 (1073)
35 1wa5_B Importin alpha subunit; 99.6 6.1E-14 2.1E-18 184.9 35.3 384 1378-1765 87-509 (530)
36 2z6h_A Catenin beta-1, beta-ca 99.6 4.4E-13 1.5E-17 180.8 43.5 477 1458-2002 14-535 (644)
37 1w63_A Adapter-related protein 99.6 2.5E-13 8.7E-18 181.2 39.7 539 1425-2034 39-609 (618)
38 1jdh_A Beta-catenin; beta-cate 99.6 1.8E-13 6.1E-18 180.6 37.9 460 1300-1802 17-528 (529)
39 2z6h_A Catenin beta-1, beta-ca 99.6 2.4E-13 8.3E-18 183.4 39.4 462 1301-1803 15-526 (644)
40 3m1i_C Exportin-1; heat repeat 99.6 1.2E-10 4E-15 165.9 68.2 787 1133-2030 19-929 (1049)
41 1jdh_A Beta-catenin; beta-cate 99.6 8.7E-13 3E-17 174.0 39.1 467 1459-1992 18-528 (529)
42 3ibv_A Exportin-T; karyopherin 99.6 3.6E-10 1.2E-14 157.0 66.5 586 1142-1782 20-745 (980)
43 4hat_C Exportin-1; heat repeat 99.6 1E-09 3.5E-14 152.4 66.0 767 1133-2016 19-912 (1023)
44 1w63_A Adapter-related protein 99.6 4E-12 1.4E-16 169.6 40.5 476 1380-1912 72-575 (618)
45 2qk2_A LP04448P; mini spindles 99.6 1E-13 3.6E-18 162.6 22.2 193 1342-1539 20-216 (242)
46 2qk1_A Protein STU2; STU2P, XM 99.5 1.8E-13 6.2E-18 160.0 22.2 196 1347-1542 25-234 (249)
47 3ul1_B Importin subunit alpha- 99.5 5.1E-12 1.8E-16 165.0 36.5 377 1422-1802 59-476 (510)
48 3tpo_A Importin subunit alpha- 99.5 1.3E-11 4.4E-16 162.2 37.8 378 1421-1802 77-495 (529)
49 2vgl_A Adaptor protein complex 99.5 1.3E-11 4.3E-16 164.0 34.9 480 1453-1992 69-587 (621)
50 2qk2_A LP04448P; mini spindles 99.5 4.9E-13 1.7E-17 156.8 18.2 199 1457-1660 14-217 (242)
51 3ul1_B Importin subunit alpha- 99.5 2E-11 6.9E-16 159.4 35.2 387 1339-1764 59-476 (510)
52 3tpo_A Importin subunit alpha- 99.4 8.1E-11 2.8E-15 154.6 38.6 386 1340-1764 79-495 (529)
53 2vgl_A Adaptor protein complex 99.4 2.7E-09 9.3E-14 141.7 46.6 498 1351-1911 51-586 (621)
54 2qk1_A Protein STU2; STU2P, XM 99.4 1E-11 3.5E-16 145.2 19.5 199 1462-1662 20-234 (249)
55 1oyz_A Hypothetical protein YI 99.4 3E-11 1E-15 145.0 24.1 248 1380-1679 25-274 (280)
56 1oyz_A Hypothetical protein YI 99.3 1E-10 3.5E-15 140.3 25.4 251 1421-1720 24-277 (280)
57 4ady_A RPN2, 26S proteasome re 99.3 1.2E-07 4.2E-12 125.8 55.1 362 1592-2032 374-751 (963)
58 4ady_A RPN2, 26S proteasome re 99.3 8E-08 2.7E-12 127.6 51.4 307 1422-1764 394-717 (963)
59 3gjx_A Exportin-1; transport, 99.3 3.2E-07 1.1E-11 126.7 59.1 371 1617-2016 475-936 (1073)
60 3a6p_A Exportin-5; exportin-5, 99.2 1.2E-08 4E-13 145.9 40.9 522 1058-1668 12-682 (1204)
61 3oc3_A Helicase MOT1, MOT1; re 99.2 3.3E-10 1.1E-14 135.9 16.7 256 1059-1363 176-432 (800)
62 3ltm_A Alpha-REP4; protein eng 99.1 9.7E-10 3.3E-14 125.7 19.4 186 1420-1650 19-205 (211)
63 3ltj_A Alpharep-4; protein eng 99.1 9.4E-10 3.2E-14 124.7 19.0 189 1414-1647 8-197 (201)
64 4hxt_A De novo protein OR329; 99.0 1.6E-08 5.5E-13 118.6 25.3 237 1379-1653 3-246 (252)
65 1xm9_A Plakophilin 1; armadill 99.0 1.3E-08 4.6E-13 130.6 25.7 345 1422-1802 4-447 (457)
66 3ltm_A Alpha-REP4; protein eng 99.0 5.6E-09 1.9E-13 119.3 19.1 87 1458-1561 19-106 (211)
67 2iw3_A Elongation factor 3A; a 99.0 7.4E-09 2.5E-13 139.5 23.0 302 1674-2014 30-356 (986)
68 3opb_A SWI5-dependent HO expre 99.0 7.4E-07 2.5E-11 116.3 40.7 479 1310-1803 180-727 (778)
69 3ltj_A Alpharep-4; protein eng 99.0 1.2E-08 4.2E-13 115.5 21.0 152 1457-1646 13-165 (201)
70 3opb_A SWI5-dependent HO expre 99.0 7.8E-06 2.7E-10 106.8 49.4 555 1378-1995 132-729 (778)
71 4db8_A Armadillo-repeat protei 99.0 9.8E-09 3.4E-13 120.8 18.4 223 1423-1647 15-250 (252)
72 4hxt_A De novo protein OR329; 99.0 3.1E-08 1.1E-12 116.1 22.6 237 1460-1734 4-250 (252)
73 3l6x_A Catenin delta-1; cateni 98.9 1.3E-07 4.3E-12 122.1 28.7 342 1458-1803 48-475 (584)
74 1xm9_A Plakophilin 1; armadill 98.9 2.1E-07 7.3E-12 119.3 29.1 339 1380-1724 4-448 (457)
75 3nmz_A APC variant protein; pr 98.9 3E-07 1E-11 116.1 28.9 212 1589-1803 213-449 (458)
76 3l6x_A Catenin delta-1; cateni 98.9 6.7E-07 2.3E-11 115.4 32.4 344 1301-1648 49-476 (584)
77 4db8_A Armadillo-repeat protei 98.8 2.7E-08 9.2E-13 117.0 16.6 225 1302-1528 14-251 (252)
78 3a6p_A Exportin-5; exportin-5, 98.8 3.7E-05 1.3E-09 109.9 51.5 140 1854-1997 542-700 (1204)
79 3nmz_A APC variant protein; pr 98.8 5.3E-07 1.8E-11 113.9 26.6 313 1378-1728 70-453 (458)
80 4db6_A Armadillo repeat protei 98.7 4.3E-07 1.5E-11 103.4 19.8 191 1420-1647 12-208 (210)
81 4db6_A Armadillo repeat protei 98.7 2.2E-07 7.4E-12 105.8 16.5 188 1340-1528 14-209 (210)
82 2db0_A 253AA long hypothetical 98.6 2.3E-05 7.9E-10 81.4 25.6 192 1349-1554 43-234 (253)
83 2of3_A ZYG-9; multifunctional 98.6 1.8E-06 6.2E-11 99.4 19.6 173 1350-1533 58-241 (266)
84 2db0_A 253AA long hypothetical 98.5 2.6E-05 8.8E-10 81.0 24.6 216 1299-1528 31-246 (253)
85 1vsy_5 Proteasome activator BL 98.5 5.4E-05 1.9E-09 103.9 36.0 463 1522-1996 452-968 (997)
86 4ffb_C Protein STU2; tubulin f 98.5 2.3E-06 7.9E-11 102.0 18.6 187 1463-1653 14-217 (278)
87 1vsy_5 Proteasome activator BL 98.4 0.00019 6.5E-09 98.6 37.4 656 1336-2043 132-938 (997)
88 3oc3_A Helicase MOT1, MOT1; re 98.4 1.3E-06 4.5E-11 105.4 13.6 211 1301-1527 175-403 (800)
89 3nmw_A APC variant protein; AR 98.4 9.7E-06 3.3E-10 99.3 21.7 227 1392-1654 97-340 (354)
90 4ffb_C Protein STU2; tubulin f 98.4 4.2E-06 1.4E-10 99.8 18.1 196 1777-1998 12-216 (278)
91 2of3_A ZYG-9; multifunctional 98.4 1.4E-05 4.9E-10 92.0 21.4 182 1462-1653 50-241 (266)
92 1xqr_A HSPBP1 protein; armadil 98.4 1E-05 3.5E-10 96.4 20.0 168 1394-1562 55-235 (296)
93 3nmw_A APC variant protein; AR 98.3 1.7E-05 5.8E-10 97.2 20.2 218 1313-1531 97-337 (354)
94 1xqr_A HSPBP1 protein; armadil 98.2 1.3E-05 4.5E-10 95.5 16.5 175 1353-1529 55-239 (296)
95 3b2a_A TON_1937, putative unch 98.0 0.00039 1.3E-08 76.1 20.8 219 1737-1990 33-257 (265)
96 3b2a_A TON_1937, putative unch 97.9 0.00088 3E-08 73.3 22.2 178 1378-1562 33-215 (265)
97 3tjz_B Coatomer subunit gamma; 97.9 8.3E-05 2.8E-09 89.9 15.1 282 1456-1798 66-347 (355)
98 1te4_A Conserved protein MTH18 97.8 3.5E-06 1.2E-10 87.9 1.4 119 1418-1561 10-129 (131)
99 1lrv_A LRV, leucine-rich repea 97.8 3.4E-06 1.2E-10 96.9 1.4 188 1342-1644 54-242 (244)
100 3tjz_B Coatomer subunit gamma; 97.7 0.00046 1.6E-08 83.4 18.0 248 1379-1650 69-318 (355)
101 1lrv_A LRV, leucine-rich repea 97.7 1.3E-05 4.5E-10 92.0 4.2 185 1506-1800 57-242 (244)
102 1te4_A Conserved protein MTH18 97.7 2.3E-06 8E-11 89.2 -1.9 119 1378-1525 12-130 (131)
103 3grl_A General vesicular trans 97.5 0.02 6.7E-07 73.2 29.1 185 1334-1549 18-220 (651)
104 4gmo_A Putative uncharacterize 97.5 0.048 1.6E-06 73.1 34.3 148 1378-1529 35-215 (684)
105 3l9t_A Putative uncharacterize 97.4 0.0034 1.1E-07 69.8 16.8 145 1336-1494 69-214 (240)
106 3grl_A General vesicular trans 97.3 0.46 1.6E-05 60.8 36.5 478 1499-2028 21-584 (651)
107 3tt9_A Plakophilin-2; cell adh 96.8 0.018 6.2E-07 65.4 16.6 198 1422-1647 10-228 (233)
108 3tt9_A Plakophilin-2; cell adh 96.7 0.067 2.3E-06 60.7 20.1 153 1458-1648 8-180 (233)
109 3l9t_A Putative uncharacterize 96.5 0.013 4.4E-07 65.2 12.0 140 1617-1767 69-208 (240)
110 4gmo_A Putative uncharacterize 95.7 0.012 4.1E-07 79.0 8.1 91 1922-2013 34-129 (684)
111 3u0r_A Apoptosis inhibitor 5; 94.7 2.8 9.5E-05 51.4 23.3 121 1672-1803 42-162 (507)
112 3u0r_A Apoptosis inhibitor 5; 94.4 13 0.00045 45.6 28.1 144 1392-1550 41-190 (507)
113 3gs3_A Symplekin, LD45768P; he 93.3 14 0.00047 42.2 28.2 141 1435-1605 30-173 (257)
114 1lsh_A Lipovitellin (LV-1N, LV 92.7 2.2 7.5E-05 59.8 20.4 153 1432-1605 407-576 (1056)
115 4atg_A TAF6; transcription, TF 92.6 2.2 7.5E-05 46.4 15.6 106 1591-1702 61-174 (196)
116 3gs3_A Symplekin, LD45768P; he 91.6 22 0.00076 40.5 23.5 178 1860-2043 31-255 (257)
117 4atg_A TAF6; transcription, TF 91.5 5.9 0.0002 43.1 17.4 142 1334-1487 8-162 (196)
118 1vsy_4 Proteasome activator BL 90.3 22 0.00076 47.6 25.1 272 1494-1766 334-687 (799)
119 1lsh_A Lipovitellin (LV-1N, LV 88.7 26 0.00091 48.9 25.2 168 1337-1524 356-539 (1056)
120 1vsy_4 Proteasome activator BL 80.8 44 0.0015 44.7 20.5 200 1845-2045 340-606 (799)
121 2b6c_A Hypothetical protein EF 80.2 17 0.00059 40.6 14.0 141 1341-1497 58-198 (220)
122 3o2t_A Symplekin; heat repeat, 76.8 1.4E+02 0.0047 36.1 29.9 200 1337-1545 25-272 (386)
123 1upk_A MO25 protein; transfera 76.6 1.2E+02 0.0043 35.5 24.8 170 1351-1528 91-283 (341)
124 1w9c_A CRM1 protein, exportin 69.2 89 0.003 36.6 16.4 157 1860-2016 45-228 (321)
125 3o2t_A Symplekin; heat repeat, 68.0 2.1E+02 0.0073 34.5 29.9 221 1753-2010 41-318 (386)
126 1upk_A MO25 protein; transfera 67.0 2E+02 0.0069 33.8 21.6 145 1378-1529 78-239 (341)
127 1w9c_A CRM1 protein, exportin 66.5 1.3E+02 0.0045 35.2 17.1 115 1417-1531 70-199 (321)
128 3fga_B Serine/threonine-protei 65.3 2.4E+02 0.0083 34.1 22.4 256 1468-1766 94-366 (403)
129 3g2s_A C-terminal fragment of 62.8 87 0.003 32.4 13.2 75 1457-1531 47-129 (149)
130 3ldz_A STAM-1, signal transduc 62.7 61 0.0021 33.2 12.0 75 1457-1531 41-117 (140)
131 1mhq_A ADP-ribosylation factor 60.0 1.1E+02 0.0038 31.5 13.5 75 1457-1531 37-119 (148)
132 3jxy_A Alkylpurine DNA glycosy 58.5 58 0.002 36.6 12.1 110 1379-1498 96-206 (232)
133 1x5b_A Signal transducing adap 55.1 1E+02 0.0035 32.4 12.4 75 1457-1531 51-128 (163)
134 1vdy_A Hypothetical protein (R 53.3 47 0.0016 34.0 8.9 46 1692-1737 45-90 (140)
135 3ut4_A CTHE_2751, putative unc 52.2 83 0.0028 31.7 10.3 87 1450-1550 23-109 (134)
136 1juq_A ADP-ribosylation factor 51.7 1.6E+02 0.0054 31.2 13.3 76 1456-1531 48-131 (171)
137 1ho8_A Vacuolar ATP synthase s 51.7 4.3E+02 0.015 32.7 26.5 70 1923-1994 395-476 (480)
138 3ldz_A STAM-1, signal transduc 50.5 63 0.0022 33.1 9.7 74 1378-1452 42-117 (140)
139 1mhq_A ADP-ribosylation factor 49.6 1.8E+02 0.0061 30.0 13.0 76 1694-1769 36-119 (148)
140 1vdy_A Hypothetical protein (R 49.4 73 0.0025 32.5 9.7 73 1456-1528 47-130 (140)
141 1ho8_A Vacuolar ATP synthase s 49.1 4.6E+02 0.016 32.4 21.7 88 1866-1953 380-477 (480)
142 1x5b_A Signal transducing adap 48.1 1.1E+02 0.0036 32.3 11.2 78 1693-1770 49-129 (163)
143 3s4w_B Protein FACD2, fanconi 45.6 8.3E+02 0.029 34.3 25.3 342 1299-1653 156-554 (1323)
144 3jxy_A Alkylpurine DNA glycosy 45.0 2.5E+02 0.0084 31.3 14.5 127 1310-1452 71-198 (232)
145 3g2s_A C-terminal fragment of 42.2 1.9E+02 0.0066 29.8 11.8 77 1694-1770 46-130 (149)
146 2npp_B PP2A, B subunit, serine 41.5 5.8E+02 0.02 31.3 18.8 62 1469-1530 128-193 (449)
147 1juq_A ADP-ribosylation factor 41.1 1.1E+02 0.0038 32.4 10.1 74 1378-1452 50-131 (171)
148 2b6c_A Hypothetical protein EF 41.0 1.7E+02 0.0059 32.3 12.3 91 1349-1452 101-191 (220)
149 1elk_A Target of MYB1; superhe 40.4 1.4E+02 0.0047 31.2 10.6 75 1378-1452 53-133 (157)
150 3fga_B Serine/threonine-protei 39.2 5.9E+02 0.02 30.7 20.5 43 1600-1643 275-317 (403)
151 3ut4_A CTHE_2751, putative unc 36.1 1.9E+02 0.0065 29.2 10.0 84 1688-1785 23-106 (134)
152 1elk_A Target of MYB1; superhe 30.3 4.8E+02 0.016 27.0 12.8 77 1693-1769 50-133 (157)
153 2kw3_C Regulatory factor X-ass 30.2 15 0.00053 30.3 0.9 18 252-269 20-37 (62)
154 2npp_B PP2A, B subunit, serine 28.7 8.9E+02 0.031 29.7 20.7 125 1906-2032 268-401 (449)
155 3zyq_A Hepatocyte growth facto 28.5 2.2E+02 0.0076 31.6 10.4 73 1378-1451 45-120 (226)
156 3zyq_A Hepatocyte growth facto 27.8 3E+02 0.01 30.4 11.4 77 1694-1770 43-122 (226)
157 3dad_A FH1/FH2 domain-containi 25.4 8.8E+02 0.03 28.4 20.3 110 1422-1531 162-289 (339)
158 1sz9_A PCF11 protein; RNA poly 25.0 5.2E+02 0.018 26.3 11.6 74 1920-1993 40-113 (144)
159 1dvp_A HRS, hepatocyte growth 23.3 5.2E+02 0.018 28.3 12.2 75 1457-1531 41-118 (220)
160 4flb_A Regulation of nuclear P 22.1 4.5E+02 0.015 26.1 10.4 95 1892-1992 15-110 (132)
161 1dvp_A HRS, hepatocyte growth 21.3 4.8E+02 0.017 28.6 11.4 77 1694-1770 40-119 (220)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.7e-39 Score=472.63 Aligned_cols=888 Identities=17% Similarity=0.180 Sum_probs=631.8
Q ss_pred HHhHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1132 YSGLFKALSHSNYNVRLAAAEALATALDEY-----PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1132 ~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
+..+++.+.++|..+|..|...|....... ++....++..+++.+ . +.+|.+|.+++.+++.++.
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L----~------d~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----E------DKNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----T------CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh----c------CCCHHHHHHHHHHHHHHHH
Confidence 377888999999999999988888766432 123445555555542 2 4679999999999999988
Q ss_pred hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCcc---------chhhHHHHHHHHhcccCCChhHHHHHH
Q 000143 1207 VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---------NVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2058)
Q Consensus 1207 ~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~---------~~~~Ll~~l~~~L~~~~~~~e~~~~vR 1277 (2058)
..++...+.+++.++ .++.|+++.||..+..+...++...+.. +++.++|.+...+.+ .. + ..+|
T Consensus 78 ~~~~~~~~~i~~~Ll-~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~--~--~~~~ 151 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QE--D--VSVQ 151 (1230)
T ss_dssp TSCHHHHHHHHHHHH-HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CS--C--HHHH
T ss_pred hCCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CC--c--hHHH
Confidence 776655667777775 5788999999999999888888776654 588999999888864 11 1 2689
Q ss_pred HHHHHHHHHHHhHhcc-CCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHH
Q 000143 1278 EGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGER 1355 (2058)
Q Consensus 1278 ~~av~~Lg~La~~l~~-~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR 1355 (2058)
..++.+++.+++..++ ..|+++.+++.++..|.+++..||..+..|++.++...++. +..+++.+++.+...+++..|
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHH
Confidence 9999999999986654 34789999999999999999999999999999998776543 355688888888776556788
Q ss_pred HHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC---
Q 000143 1356 RGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD--- 1431 (2058)
Q Consensus 1356 ~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D--- 1431 (2058)
..++.+++.++...|....+ -..+++.+.+.+.++ ++.+|+.++.+++.+++.++..+.||+..++|.++..+.+
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~ 310 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 310 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCC
Confidence 99999999999987753221 127999999999876 7889999999999999999999999999999999876631
Q ss_pred ----------------------------------CCHHHHHHHHHHHHHHHHhhhh---hhHHhHHHHHHHhccCCChHH
Q 000143 1432 ----------------------------------QVVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1432 ----------------------------------~~~~VR~aA~~al~~l~~~l~~---~~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
..+.||.+|..+++.++...+. ..+..++|.+...+.+.+..+
T Consensus 311 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 311 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 390 (1230)
T ss_dssp ----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHH
T ss_pred CCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHH
Confidence 1246899999999999876553 234677888989999999999
Q ss_pred HHHHHHHHHHHHhhC-------------------hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1475 KQSSVQLLGAMAYCA-------------------PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~-------------------p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
|..++.+++.+.... ...+..+++.++|.+.+.++|+++.+|.+++.+++.++...++
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~ 470 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 470 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH
Confidence 999999999887642 2356778899999999999999999999999999999987653
Q ss_pred hhHHhHHHHHHhccCCCCh--hHH-HHHHHHHhc--cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGLTDPND--HTK-YSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~--~vr-~al~~L~~~--~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+++..++|.++..+.|+.. .++ +++..+... .+....-.+.+..++|.+...++|+++.++..+..+++.+++.+
T Consensus 471 ~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~ 550 (1230)
T 1u6g_C 471 QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 550 (1230)
T ss_dssp GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHh
Confidence 6789999999999999875 555 455555431 11122223567789999999999999999999999999998776
Q ss_pred CC-----CCchhhhHhhhhHHHHHhh--CCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TE-----PKDMIPYIGLLLPEVKKVL--VDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~-----~~~l~pyl~~ll~~L~~~l--~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
+. +..+.||++.++|.+...+ .|.++++|..++.++|.++...|+. +++.+++.+.+.+.++. .|..
T Consensus 551 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~---~r~~ 627 (1230)
T 1u6g_C 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI---TRLT 627 (1230)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS---HHHH
T ss_pred cCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch---hHHH
Confidence 54 3578899999999999999 7889999999999999999999876 45677777777765322 3444
Q ss_pred HHHHHHHHHHHhc----hhHHHHhhHHHHHhhccCChhHHHHHHHHHHH-------------------------------
Q 000143 1678 AAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKY------------------------------- 1722 (2058)
Q Consensus 1678 aa~~L~~i~~~~g----~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~------------------------------- 1722 (2058)
+..+++.++...+ ..++..++|.+...+.+.++.+|..++.+++.
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~ 707 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHH
Confidence 4444444433211 11334444444444444444455554444444
Q ss_pred -----------hHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc-----cchhchHHhHhhhcCC
Q 000143 1723 -----------LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFN 1786 (2058)
Q Consensus 1723 -----------la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~-----~~l~~llp~L~~~l~d 1786 (2058)
+....+..+.++.+.++|.++..+.++. ++..+..++..++..... ..++.+++.+...+..
T Consensus 708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~ 785 (1230)
T 1u6g_C 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 785 (1230)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC
Confidence 4444444444455555666666555432 122233333333333222 1234455555443321
Q ss_pred -----CCHHHHHHHHHHHHHHHHHhhCCcc---cccccCCCCCCCcchHHHHH-HHHHHhCh----hhHHHHHHHHHHhh
Q 000143 1787 -----DNWRIRQSSVELLGDLLFKVAGTSG---KALLEGGSDDEGASTEAHGR-AIIEVLGR----DKRNEVLAALYMVR 1853 (2058)
Q Consensus 1787 -----~~~~vR~sav~ll~~Ll~~~~g~~~---k~~~~~~~e~~~~~~e~~~~-~l~~~Lg~----~~~~~vL~~L~~~~ 1853 (2058)
.++.++..+...++.++.......+ +.+......+.......... .....+|. ....++...+...+
T Consensus 786 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l 865 (1230)
T 1u6g_C 786 QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF 865 (1230)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGG
T ss_pred CCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHh
Confidence 3566778888888887643221111 11111111000000000000 00111111 01124556666677
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC----------------------------------hhhHHHhHHHHHHHHHHHhcCCCH
Q 000143 1854 SDVSLSVRQAALHVWKTIVANT----------------------------------PKTLKEIMPVLMNTLISSLASSSS 1899 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~----------------------------------~~~l~~~l~~L~~~l~~~L~~~~~ 1899 (2058)
.|.+..||.+|...++.++... ...+.++.+.+++.+.+.+.+.+.
T Consensus 866 ~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~ 945 (1230)
T 1u6g_C 866 SSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE 945 (1230)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST
T ss_pred CCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch
Confidence 8888888888877777654321 123445556777777777777788
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.+|..+++|+|.++.... ..++|.+.+.+.++++.+|..++.+++.++...+.. ..+|++.+++.+...+.|+++
T Consensus 946 ~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~~~~ll~~l~d~~~ 1020 (1230)
T 1u6g_C 946 GTRNVVAECLGKLTLIDP----ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDL 1020 (1230)
T ss_dssp THHHHHHHHHHHHHHSSG----GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCT-HHHHHHHHSTTTHHHHSSSST
T ss_pred hhHHHHHHHHhhhhccCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchh-hHHHHHHHHHHHHHhcCCCcH
Confidence 899999999999987632 578899999999999999998888888877766543 467888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHhcCC--C------------------cchHHHHHHHHHHHhhcCCc-
Q 000143 1980 EVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALED--D------------------QTSDTALDGLKQILSVRTTA- 2035 (2058)
Q Consensus 1980 ~VR~~Aa~a~~~l~~~~g~---~~~~~ilp~Ll~~L~~--~------------------~~~~~al~aL~~i~~~~~~~- 2035 (2058)
+||++|+++++.+.++.+. +++++++|.|++.+.- + +.|++|++++..++.++.+.
T Consensus 1021 ~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i 1100 (1230)
T 1u6g_C 1021 NVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988764 4778999999988742 1 35899999999999887443
Q ss_pred cchhhhhhhcc
Q 000143 2036 VLPHILPKLVH 2046 (2058)
Q Consensus 2036 ~lp~lip~L~~ 2046 (2058)
-+..+++.++.
T Consensus 1101 ~~~~~~~~~~~ 1111 (1230)
T 1u6g_C 1101 DIFEFLNHVED 1111 (1230)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 34445555554
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.2e-37 Score=452.96 Aligned_cols=955 Identities=15% Similarity=0.140 Sum_probs=661.2
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCC--CchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCC----
Q 000143 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSL--PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFG---- 1129 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~--~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~---- 1129 (2058)
+.++..+|+++.+||+++|.+|++.|.+......... .....+...++-...|+++.+|..|............
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3578999999999999999999999987653321111 1123466677777778999999887654333111111
Q ss_pred CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCc----------hHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHH
Q 000143 1130 TDY-SGLFKALSHSNYNVRLAAAEALATALDEYPDS----------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2058)
Q Consensus 1130 ~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~----------~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~ 1198 (2058)
+.+ +.+++.+.+++..+|.+++.+++.++...+.. ++.+++.|++.+ .+ ++.|.+|.+++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l----~~-----~~~~~~~~~al 155 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI----AK-----QEDVSVQLEAL 155 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH----SC-----CSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH----cC-----CCchHHHHHHH
Confidence 234 67778888999999999999999998776542 556666666554 21 24688999999
Q ss_pred HHHHHhhhhhCCC---ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1199 LALHSAADVLRTK---DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1199 ~al~~l~~~~~~~---~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
.++..++..++.. ..+.++..++ ..+.|+++.||..++.+...++...+...++.+++.+...+.... + ..
T Consensus 156 ~~l~~~~~~~~~~l~~~~~~ll~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-~----~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFHPSILTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-S----MS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC-S----SC
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC-c----hh
Confidence 9999998766543 3456666664 678899999999999998888876666667778888877776521 1 14
Q ss_pred HHHHHHHHHHHHHhHhccC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhc------
Q 000143 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK------ 1348 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~------ 1348 (2058)
+|..++.+++.++...++. .|++..+++.++..+.++++.||..+..++..++...++.+..+++.++..+..
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCC
Confidence 6788999999999876542 478899999999999999999999999999988887766655555544443321
Q ss_pred ----------------------------------CCCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCH
Q 000143 1349 ----------------------------------SDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSA 1393 (2058)
Q Consensus 1349 ----------------------------------~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~ 1393 (2058)
+..|.+|+.|+.++..++...|....+ ...++|.+...+.+. ++
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~-~~ 388 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKER-EE 388 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCS-SS
T ss_pred CCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCC-ch
Confidence 012667999999999999865531111 125677777777665 78
Q ss_pred HHHHHHHHHHHHHHHHhcc-------------------cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-
Q 000143 1394 KRREGALLAFECLCEKLGR-------------------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA- 1453 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~-------------------~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~- 1453 (2058)
.+|..++.++..+....+. .+.+++..++|.+...+.|+++.+|.+++.+++.++...+.
T Consensus 389 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~ 468 (1230)
T 1u6g_C 389 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh
Confidence 9999999999988876542 34567778888888889999999999999999999887543
Q ss_pred --hhHHhHHHHHHHhccCCCh--HHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 --QGVKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 --~~v~~llp~Ll~~L~~~~~--~~R~~a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
..++.++|.+++.+.+.++ .+|..++..++.+.... ++.+.++++.++|.+...++|.++.||..|+.+++.+++
T Consensus 469 l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~ 548 (1230)
T 1u6g_C 469 LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVK 548 (1230)
T ss_dssp TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 2358899999999998876 88999999999988644 555889999999999999999999999999999999998
Q ss_pred hcCc----------hhHHhHHHHHHhcc--CCCChhHH-HHHHHHHhc-cccccCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000143 1529 VIKN----------PEIASLVPTLLMGL--TDPNDHTK-YSLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2058)
Q Consensus 1529 ~~~~----------~~i~~lvp~Ll~~l--~d~~~~vr-~al~~L~~~-~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~ 1594 (2058)
.++. |+++.++|.++..+ .|++..+| .++.+++.. ......-.+.+..++|.+...+.+.. +|.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~ 626 (1230)
T 1u6g_C 549 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRL 626 (1230)
T ss_dssp HHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHH
T ss_pred HhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHH
Confidence 7765 68899999999998 67777787 455665541 22222223556778888888777653 677
Q ss_pred HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcc--cCCC
Q 000143 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALK--SDNS 1671 (2058)
Q Consensus 1595 ~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~--~d~~ 1671 (2058)
.++.+++.++... .+.++.+|++.++|.+...+.++++.+|..++.+++.++...+.... +.+.|.+...+. ++.+
T Consensus 627 ~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D 705 (1230)
T 1u6g_C 627 TTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705 (1230)
T ss_dssp HHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC
T ss_pred HHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcch
Confidence 8888898887643 23467899999999999999999999999999999999998876432 233333322211 2455
Q ss_pred hHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhc--hhHHHhHHH-------
Q 000143 1672 NVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLG--VQFQNYLQQ------- 1737 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g--~~f~pyl~~------- 1737 (2058)
..++..+..+++.++...+.. +.+.++|.++..+.++. .......+.++..+..... ..|.++++.
T Consensus 706 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~ 785 (1230)
T 1u6g_C 706 MHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 785 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC
Confidence 656777778888777655433 34566666666555432 1122222222222221110 012222211
Q ss_pred -------------------------------HHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc
Q 000143 1738 -------------------------------VLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1784 (2058)
Q Consensus 1738 -------------------------------ilp~Ll~~L~d--~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l 1784 (2058)
+++.+...+.+ ..+.++..++.+++.+.....-...+.+.+.+.+.+
T Consensus 786 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l 865 (1230)
T 1u6g_C 786 QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF 865 (1230)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGG
T ss_pred CCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHh
Confidence 12222222222 234455555555555433211111234567777888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHH---hChh----hHHHHHHHHHHhhcCCC
Q 000143 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEV---LGRD----KRNEVLAALYMVRSDVS 1857 (2058)
Q Consensus 1785 ~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~---Lg~~----~~~~vL~~L~~~~~D~~ 1857 (2058)
.+.+..||.++..++|.+.........+.++.....+.. .......++.+. .+.+ +...+++.|+....+.+
T Consensus 866 ~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~-~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~ 944 (1230)
T 1u6g_C 866 SSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK-RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAE 944 (1230)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGG-GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSS
T ss_pred CCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccch-hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcc
Confidence 888999999999999887532100000111110000000 011111222222 2222 23456666666666667
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCC
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKD 1934 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d 1934 (2058)
..+|..+..+++.+....+. . ++|.+.+.+.+++...|..++.+++.++...+..+ ++.++|.+...++|
T Consensus 945 ~~~r~~~a~~lg~l~~~~~~---~----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d 1017 (1230)
T 1u6g_C 945 EGTRNVVAECLGKLTLIDPE---T----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1017 (1230)
T ss_dssp TTHHHHHHHHHHHHHHSSGG---G----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSS
T ss_pred hhhHHHHHHHHhhhhccChH---H----HHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCC
Confidence 78999999999998876552 3 34445556789999999999988888776665443 55666777778899
Q ss_pred CChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHh
Q 000143 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC------------------DSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1935 ~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~------------------D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
+++++|+.++.+++.++... ++.+.++++.++|.|.+.+. |..-++|++|..|+..+.++.
T Consensus 1018 ~~~~vr~~a~~~l~~~~~~~-~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1018 PDLNVRRVALVTFNSAAHNK-PSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp SSTHHHHHHHHHHHHHHHHC-GGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHHhcC-hHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888654 56778899999999988663 444599999999999999875
Q ss_pred Ch-hhHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcCCccch
Q 000143 1997 GM-QAIDEIVPTLLHALEDDQ-TSDTALDGLKQILSVRTTAVLP 2038 (2058)
Q Consensus 1997 g~-~~~~~ilp~Ll~~L~~~~-~~~~al~aL~~i~~~~~~~~lp 2038 (2058)
.. -.+.++++.++..|+|++ .+.-++..|..++..+|..+++
T Consensus 1097 ~~~i~~~~~~~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~ 1140 (1230)
T 1u6g_C 1097 LDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQ 1140 (1230)
T ss_dssp CSSSCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHT
T ss_pred HHhCCHHHHHHHHHcccCchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 43 357899999999999853 4567888888888887765554
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=8.8e-37 Score=429.34 Aligned_cols=743 Identities=13% Similarity=0.153 Sum_probs=567.2
Q ss_pred HhHHHHh-cCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh-----
Q 000143 1133 SGLFKAL-SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD----- 1206 (2058)
Q Consensus 1133 ~~ll~~l-~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~----- 1206 (2058)
..++... .++|..+|+.|.+.|..+.+.. .+..+..|...+.. .+.+..+|..++..|++...
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---~~~~~~~l~~il~~--------~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN---FLQFAGLSSQVLID--------ENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTC--------TTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHhhccCcChH
Confidence 4566666 7889999999999998866542 12233334333211 02346789999998888642
Q ss_pred ----------h-hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHH
Q 000143 1207 ----------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2058)
Q Consensus 1207 ----------~-~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~ 1274 (2058)
. ++.+....+...++ ..+.++++.+|..+..+...+.....+ ..|++++|.+...+.+. + ..
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~----~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q----PE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----CH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----CH
Confidence 1 33333445556665 568888999999998888777766544 47999999998887541 1 12
Q ss_pred HHHHHHHHHHHHHHhHhccC----CcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccch-----HH-HHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRL 1342 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~----~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~~-----~~-~v~~L 1342 (2058)
.+|+.++.+++.+++.+... .++...+++.+...+.++ +..||.++.+|+..++...+... .. +++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 68999999999999876543 357888999999999988 89999999999988765443221 12 34444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---------
Q 000143 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG--------- 1411 (2058)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--------- 1411 (2058)
. .+..++++.+|..+..++..++...+....+ .. .+++.+...+.+. +..+|..++.++..+++...
T Consensus 230 ~-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 230 C-EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp H-HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3 4456678999999999999999877533221 11 5666666666665 78999999999999887631
Q ss_pred --------ccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1412 --------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1412 --------~~~~p~l~~llp~Ll~~l~D-------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
..+.+++..++|.++..+.+ ++..+|.++..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 23467788899999988874 346899999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+++.++|.++.++. +.+.++++.++|.+...+.|+++.||.++++++++++..++... .
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------------~------- 447 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI-------------D------- 447 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------C-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------C-------
Confidence 99999999998874 77889999999999999999999999999999999998654210 0
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC--CCchhhhHhhhhHHHHHhhC--CC
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--DP 1631 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~--~~~l~pyl~~ll~~L~~~l~--d~ 1631 (2058)
..+.+..++|.+...++|. +.+|..++.++++++..+++ +..+.||++.+++.+...+. |.
T Consensus 448 --------------~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 448 --------------PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp --------------TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred --------------CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc
Confidence 0112334555566666665 78888999999999886542 46688999999999999998 44
Q ss_pred CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccC--------------CChHHHhhHHHHHHHHHHHhchh--
Q 000143 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV-- 1692 (2058)
Q Consensus 1632 ~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d--------------~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2058)
++.+|..++++++.++...|++ +++.++|.+++.+... ....+|..++.+++.++..+|..
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5899999999999999998876 5667888887777531 13346778899999999999874
Q ss_pred -HHHHhhHHHHHhhccCCh-hHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1693 -YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1693 -~l~~llp~Ll~~l~~~~~-~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+++.+++.++..+++.++ .+|+.++.+++.++...|.+|.||++.++|.++..+.++++.+|..++.++..++...+.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch
Confidence 678899999998888877 899999999999999999999999999999999999888888998888888877766543
Q ss_pred cchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH
Q 000143 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2058)
Q Consensus 1771 ~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~ 1850 (2058)
. +.|.+. .+++.++
T Consensus 673 ~----~~~~~~--------------------------------------------------------------~l~~~l~ 686 (861)
T 2bpt_A 673 D----FRRYSD--------------------------------------------------------------AMMNVLA 686 (861)
T ss_dssp G----GHHHHH--------------------------------------------------------------HHHHHHH
T ss_pred h----ccchHH--------------------------------------------------------------HHHHHHH
Confidence 2 111110 1111111
Q ss_pred HhhcC--CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHHhC
Q 000143 1851 MVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1851 ~~~~D--~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-----------~~~R~~A~~~Lg~L~~~lg 1917 (2058)
..+.+ .+..+|..+..+++.++...+..+.+|++.+++.+...+.... ..+|..+.++++.++..+|
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11112 1246788888899998888888899999999999988877432 4689999999999999988
Q ss_pred c--c----hhhchHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhChhhhHhHHh-hHHHHHHHHhc---CCCHHHHH
Q 000143 1918 E--R----VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEVRE 1983 (2058)
Q Consensus 1918 ~--~----~l~~llp~L~~~l~d~----~~~vR~~a~~aL~eii~~~~~~~l~~~~~-~ll~~L~~~L~---D~d~~VR~ 1983 (2058)
+ . +++.+++.+...+.|. +..+|..++.+++.++..+++..+.+|.+ .+++.+.+.+. +.+..+++
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 846 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKD 846 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHH
Confidence 3 2 3466777777777663 78899999999999999884446788888 89999888775 57789999
Q ss_pred HHHHHHHHHHHH
Q 000143 1984 SAGLAFSTLFKS 1995 (2058)
Q Consensus 1984 ~Aa~a~~~l~~~ 1995 (2058)
+|..|.+.+.+.
T Consensus 847 ~~~wa~~~~~~~ 858 (861)
T 2bpt_A 847 TARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8e-36 Score=417.47 Aligned_cols=725 Identities=15% Similarity=0.194 Sum_probs=553.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-h---
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~-~--- 1208 (2058)
..++....++|..+|+.|.+.|..+ +..|+.. ..+..+.. . . .+.+..+|..++..|++.... .
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~-~~l~~il~---~-~------~~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFN-NYLIFVLT---K-L------KSEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHH-HHHHHHHH---T-C------TTSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHH-HHHHHHHh---c-c------CCCChHHHHHHHHHHHHHHHHccCCC
Confidence 3455555688999999999999765 3344322 22223322 1 0 023457999999999987542 2
Q ss_pred CCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La 1288 (2058)
+++....+...++ +++.|+++.||..+..+...++...+...|+++++.+.+.+.+. + ..+|+.++.+|+.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~----~--~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE----D--YNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS----S--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC----C--HHHHHHHHHHHHHHH
Confidence 2222234555554 67899999999999999888887767788999999998887652 1 268999999999999
Q ss_pred hHhccC------CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc----chHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRGA 1358 (2058)
Q Consensus 1289 ~~l~~~------~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~----~~~~~v~~Ll~~L~~~~~~~vR~~A 1358 (2058)
+..+.. ...+..+++.+++.+.+++..||.++..|+..++..... ....+++.++..+ .++++.+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA-GDEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 866432 234788999999999999999999999999887754322 2346666666644 45679999999
Q ss_pred HHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHc------
Q 000143 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~--lg~~~~p~l~~llp~Ll~~l------ 1429 (2058)
+.+|..+++..+....+ -..+++.+...+.++ ++.+|..|+.++..+++. ....+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865422111 125778888887776 889999999988888763 22346889999999999887
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH
Q 000143 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1430 -----~D-----------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
+| .+..||.+|..+++.++...+.+.++.++|.+.+.+.+++|++|.+|+.++|.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 44 34568999999999999998877778899999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
.++++.++|.+...++|+++.||.+|+++++++++.++... ..+.
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HHHH
Confidence 99999999999999999999999999999999987543100 0122
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
+..++|.+...+.|.++.+|..|+.+++++++..+ ..+.||++.+++.|...+.+.+......+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 34466667777777788999999999999998654 3589999999999999998888888888999999999988864
Q ss_pred -----CccchHHHHHh---hcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhc----------------
Q 000143 1654 -----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS---------------- 1706 (2058)
Q Consensus 1654 -----~~~~llp~L~~---~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~---------------- 1706 (2058)
|++.++|.+++ .+. +.+...| .+..+++.++..+|.. +++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~-d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLK-DEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSC-TTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcc-cccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 66778888874 333 3334344 6789999999999875 44556664444332
Q ss_pred -cCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc---chhchHHhH
Q 000143 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2058)
Q Consensus 1707 -~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~---~l~~llp~L 1780 (2058)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++..+.|+.++||..+..+++.++..++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12567899999999999999999999998 789999999999999999999999999999877654 345688888
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC--CCH
Q 000143 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSL 1858 (2058)
Q Consensus 1781 ~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D--~~~ 1858 (2058)
.+.+.++++.+|..++..+|.+...+... + .++.+.+++.++..+.+ ...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~---------------------------~-~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE---------------------------M-QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG---------------------------G-GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh---------------------------H-HHHHHHHHHHHHHHhCCCCCCc
Confidence 89998888999999999999986432100 0 12334556666655433 356
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhh--cCCC
Q 000143 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~-~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~--l~d~ 1935 (2058)
.+++.+..+++.+....|..+.++++.+++.+++.+.+ .+.+.|..|.++++.+++..+....+.+..++... ..+.
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999988888889999999999988864 56678999999999999986665555554332222 2344
Q ss_pred ChhHHHHHHH
Q 000143 1936 SASRRQGVCI 1945 (2058)
Q Consensus 1936 ~~~vR~~a~~ 1945 (2058)
.++.+.....
T Consensus 808 ~~~l~~~~~~ 817 (852)
T 4fdd_A 808 KDDLRDMFCK 817 (852)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555554444
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.5e-36 Score=424.67 Aligned_cols=753 Identities=14% Similarity=0.153 Sum_probs=554.6
Q ss_pred ChHHHHHHHhhh-cCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHH-------------
Q 000143 1055 QPNEVASALHGV-YTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDI------------- 1120 (2058)
Q Consensus 1055 ~~~~l~~ll~~l-~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~------------- 1120 (2058)
+.+++.++|.++ .+||+++|.+|++.|++.... +.+.....+..+. ...+.++.+|..|...
T Consensus 2 d~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~l~~il-~~~~~~~~vR~~A~~~lk~~i~~~w~~~~ 77 (861)
T 2bpt_A 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSND---NFLQFAGLSSQVL-IDENTKLEGRILAALTLKNELVSKDSVKT 77 (861)
T ss_dssp CHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred CHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHhhccCcChHHH
Confidence 456788899999 999999999999999875411 0111222222222 1223467788887653
Q ss_pred ------Hhh-cCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHhhcCCCCCCCCC-
Q 000143 1121 ------WDR-YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDA- 1189 (2058)
Q Consensus 1121 ------w~~-~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~- 1189 (2058)
|.. .+.+....+ ..+++.+.+++..+|+.++++++.++.. +| ..|+++++.|.+.+. ++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~----------~~~ 147 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTG----------AEQ 147 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTS----------TTS
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----------cCC
Confidence 332 332222345 7788899999999999999999999865 46 388888888887642 22
Q ss_pred CchhhHHHHHHHHHhhhhhCCC------ChHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHhhCc-----cchhhHH
Q 000143 1190 GWLGRQGIALALHSAADVLRTK------DLPVIMTFLISRALADT--NADVRGRMLNAGIMIIDKHGR-----DNVSLLF 1256 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~------~~~~l~~~Li~~~L~d~--~~~VR~~al~a~~~~i~~~g~-----~~~~~Ll 1256 (2058)
.+..|.+++.+++.++..+.++ ..+.+++.+. .++.|+ ++.||..++++...++...+. ..++.++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV-QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5689999999999998876544 2345666664 577887 899999999987765432211 1235577
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchH-HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc--
Q 000143 1257 PIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-- 1332 (2058)
Q Consensus 1257 ~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~-~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~-- 1332 (2058)
+.+...+.+. + ..+|..++.+++.++...+.. .+++. .+++.++..+.+.++.|+..+..++..++....
T Consensus 227 ~~l~~~~~~~----~--~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 227 QVVCEATQAE----D--IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHTCS----C--HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 7777665431 1 268999999999999866543 35677 888888889999999999988888777765421
Q ss_pred -------------------cchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH
Q 000143 1333 -------------------DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2058)
Q Consensus 1333 -------------------~~~~~~v~~Ll~~L~~------~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l 1387 (2058)
.....+++.++..+.. +++|.+|..+..+|+.++..+|...+. .+++.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l 378 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE--PVLEFVEQNI 378 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHT
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--HHHHHHHHHc
Confidence 1124566777776654 235789999999999999988855443 7888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----hhHHhHHH
Q 000143 1388 ADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QGVKLVLP 1461 (2058)
Q Consensus 1388 ~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----~~v~~llp 1461 (2058)
.+. +|..|++++.+++.++++++ ..+.+|+..++|.++..+.|+++.||.++..+++.++..+++ ..++.++|
T Consensus 379 ~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 379 TAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 876 89999999999999998876 668899999999999999999999999999999999987754 24688999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p----~~l~~~L~~Iip~L~~~L~--D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
.+++.+.+. +++|..++.+++.++..++ ..+.+|++.+++.+...+. |.++.||.+++.+++.++...++
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 999999876 9999999999999998754 6688999999999999998 45589999999999999988764
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~-~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+++..++|.+++.+.+. .. +... ...+ -.+....+|..++.+++.++..++.
T Consensus 537 ~~~~~l~~~l~~~l~~~-----------~~--~~~~i~~~~------------~~~~~~~~~~~~~~~l~~l~~~~~~-- 589 (861)
T 2bpt_A 537 ETSASISTFVMDKLGQT-----------MS--VDENQLTLE------------DAQSLQELQSNILTVLAAVIRKSPS-- 589 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TT--SCGGGCCHH------------HHHHHHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh--hhcccCChh------------hHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 34556666655543210 00 0000 0000 0011235778888999999886543
Q ss_pred chhhhHhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
.+.||.+.+++.+...+.+.++ .+|..+..+++.++...|++ |++.++|.+++.+. +++..+|..++..++.++.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999998887 89999999999999999886 67889999999996 5566689999999999999
Q ss_pred Hhchh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC----HHHHHHHH
Q 000143 1688 ALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN----ESVRDAAL 1758 (2058)
Q Consensus 1688 ~~g~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~----~~VR~~a~ 1758 (2058)
.+|.. +++.++|.++..+.+++ +.+|..++.+++.++..+|..|.||++.++|.++..+.... ++..
T Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~---- 744 (861)
T 2bpt_A 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEAL---- 744 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHH----
T ss_pred HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHH----
Confidence 99865 56788898888888764 89999999999999999999999999999999999886422 1000
Q ss_pred HHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhC
Q 000143 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2058)
Q Consensus 1759 ~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg 1838 (2058)
+..+.+|.++++.++.++..+.+. . . .+
T Consensus 745 ---------------------------~~~~~vr~~~l~~~~~i~~~l~~~----------------~----~----~~- 772 (861)
T 2bpt_A 745 ---------------------------DYQIKVLEAVLDAYVGIVAGLHDK----------------P----E----AL- 772 (861)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHTTTC----------------H----H----HH-
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHccC----------------H----H----HH-
Confidence 001234444444444443221000 0 0 00
Q ss_pred hhhHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhC-hhhHHHhHH-HHHHHHHHHhc---CCCHHHHHHHHHHH
Q 000143 1839 RDKRNEVLAALYMVRSDV----SLSVRQAALHVWKTIVANT-PKTLKEIMP-VLMNTLISSLA---SSSSERRQVAGRAL 1909 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D~----~~~VR~aA~~~l~~lv~~~-~~~l~~~l~-~L~~~l~~~L~---~~~~~~R~~A~~~L 1909 (2058)
..+...++..+.....|. +..+|.+|..+++.++... +..+.++++ .+++.+++.+. +.+..++..|..++
T Consensus 773 ~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~ 852 (861)
T 2bpt_A 773 FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAR 852 (861)
T ss_dssp GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 011122333333333342 6789999999999999888 777888888 88888877666 46678899999999
Q ss_pred HHHHHHh
Q 000143 1910 GELVRKL 1916 (2058)
Q Consensus 1910 g~L~~~l 1916 (2058)
+.+.+.+
T Consensus 853 ~~~~~~~ 859 (861)
T 2bpt_A 853 EQQKRQL 859 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887644
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.1e-35 Score=416.10 Aligned_cols=719 Identities=15% Similarity=0.213 Sum_probs=555.4
Q ss_pred chhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhh
Q 000143 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2058)
Q Consensus 1251 ~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~ 1330 (2058)
...++...+...+.. +. .+|..|-..|..+- ..|.....+..++..+.+.+..||..++..+...+..
T Consensus 11 ~~~~l~~~l~~~~s~-----d~--~~r~~Ae~~L~~~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~ 78 (852)
T 4fdd_A 11 GLQQILQLLKESQSP-----DT--TIQRTVQQKLEQLN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA 78 (852)
T ss_dssp HHHHHHHHHHHHTCS-----CH--HHHHHHHHHHHHHT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHhCc-----CH--HHHHHHHHHHHHHH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 345566666666432 12 57888888776542 2343444455555555677889999887777666543
Q ss_pred ----cccchHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000143 1331 ----MQDEAPTLVSR-LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405 (2058)
Q Consensus 1331 ----~~~~~~~~v~~-Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~ 1405 (2058)
..++....+.. +++. ..+++..+|..++.+++.+++..++..+ +++++.+.+.+.+. ++..|++++.+++.
T Consensus 79 ~w~~~~~~~~~~ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~w--p~ll~~L~~~l~~~-~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 79 HFQNFPNGVTDFIKSECLNN-IGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSE-DYNTCEGAFGALQK 154 (852)
T ss_dssp SGGGCCHHHHHHHHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTC--TTHHHHHHHHHSCS-SHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 23334444444 4444 4566789999999999999987666554 38999999999886 89999999999999
Q ss_pred HHHHhcccch-----hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hHHhHHHHHHHhccCCChHHHHH
Q 000143 1406 LCEKLGRLFE-----PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1406 L~~~lg~~~~-----p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
+++..+..+. .++..++|.++..++|+++.||..|..++..++...+.. .++.+++.++..+.++++.+|..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 155 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234 (852)
T ss_dssp HHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9998875443 347889999999999999999999999998776544332 23678899999999999999999
Q ss_pred HHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-----CchhHHhHHHHHHhcc------
Q 000143 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-----KNPEIASLVPTLLMGL------ 1546 (2058)
Q Consensus 1478 a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~-----~~~~i~~lvp~Ll~~l------ 1546 (2058)
++.+|+.++...|+.+.++++.+++.+...+.|.++.||..|++.+..+++.. -.|++..++|.++..+
T Consensus 235 a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999999999999999999999999999999999999999999998632 1467788999998887
Q ss_pred -----CC-----------CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1547 -----TD-----------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1547 -----~d-----------~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
.| .+..+| .+..++.... .......+..++|.+...+.+.+|.+|..|+.++|.+++..
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la--~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~-- 390 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA--NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC-- 390 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHH--HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT--
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--
Confidence 34 223455 3444443311 11112345668899999999999999999999999998743
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
.+.+.+|++.++|.+...+.|+++.||..++.++|.++..+++. +++.+++.+++.+. +.+..+|..++.+++.+
T Consensus 391 ~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999877653 67789999999887 45677999999999999
Q ss_pred HHHhchh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH--HHhHHHHHHHHHH---hccCCCHHHHHHH
Q 000143 1686 LAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILD---GLADENESVRDAA 1757 (2058)
Q Consensus 1686 ~~~~g~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f--~pyl~~ilp~Ll~---~L~d~~~~VR~~a 1757 (2058)
+..+|.. +++.+++.+...+++.+......++.+++.++...|..+ .+|++.++|.+++ .+.|.++.+| .+
T Consensus 470 ~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~ 548 (852)
T 4fdd_A 470 EEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PL 548 (852)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HH
T ss_pred HHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HH
Confidence 9988865 678888888888887777777788999999999888766 3599999999984 5667777776 78
Q ss_pred HHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHh
Q 000143 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837 (2058)
Q Consensus 1758 ~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~L 1837 (2058)
++++..++..++.. +.|.+...+ ...+..+...+.. ......
T Consensus 549 ~~~l~~i~~~~g~~----~~~~~~~i~--------~~~~~~l~~~l~~--------------------------~~~~~~ 590 (852)
T 4fdd_A 549 LECLSSVATALQSG----FLPYCEPVY--------QRCVNLVQKTLAQ--------------------------AMLNNA 590 (852)
T ss_dssp HHHHHHHHHHHGGG----GHHHHHHHH--------HHHHHHHHHHHHH--------------------------HHHHHH
T ss_pred HHHHHHHHHHHhHh----HHHHHHHHH--------HHHHHHHHHHHHH--------------------------HHHhhc
Confidence 89999988887764 233322211 0112222221100 000000
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2058)
Q Consensus 1838 g~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~ 1915 (2058)
.++ ...+.+..+|..+++.++.++...+..+.+++ +.+++.+...+.++++++|..+..++|++++.
T Consensus 591 ~~~-----------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 591 QPD-----------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 659 (852)
T ss_dssp CTT-----------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCc-----------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 000 00112344677888899999888888888887 78999999999999999999999999999999
Q ss_pred hCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000143 1916 LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFS 1990 (2058)
Q Consensus 1916 lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~--d~~VR~~Aa~a~~ 1990 (2058)
++.. +++.++|.+.+.++++++.+|.++++++|++....+. .+.||++.+++.+.+.+.++ ...++++|+.++|
T Consensus 660 ~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ig 738 (852)
T 4fdd_A 660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG 738 (852)
T ss_dssp CGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 8865 4578999999999888899999999999999988865 58899999999999999876 5689999999999
Q ss_pred HHHHHhCh---hhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHhhcCCccchhhh
Q 000143 1991 TLFKSAGM---QAIDEIVPTLLHALED---DQTSDTALDGLKQILSVRTTAVLPHIL 2041 (2058)
Q Consensus 1991 ~l~~~~g~---~~~~~ilp~Ll~~L~~---~~~~~~al~aL~~i~~~~~~~~lp~li 2041 (2058)
++....+. ++++++++.|++.|++ .++++.++.+|+.+++.+|+.+++.+.
T Consensus 739 rl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~ 795 (852)
T 4fdd_A 739 RLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFI 795 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred HHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 99987432 5789999999999974 346899999999999999988877655
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.8e-35 Score=413.52 Aligned_cols=745 Identities=15% Similarity=0.169 Sum_probs=545.7
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh------
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD------ 1206 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~------ 1206 (2058)
..++..+.+++..+|+.|.+.|..+.+.+ .+.+...|...+.. . +.+..+|..++..|++...
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~---~~~~~~~L~~~l~~---~-----~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVEN---LPTFLVELSRVLAN---P-----GNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC---T-----TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcC---hhhHHHHHHHHHhC---C-----CCCHHHHHHHHHHHHHhccccchHh
Confidence 45667777889999999999998766532 22334444443321 0 1235689999999988642
Q ss_pred ---------hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-ccchhhHHHHHHHHhcccCCChhHHHHH
Q 000143 1207 ---------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKYDLV 1276 (2058)
Q Consensus 1207 ---------~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g-~~~~~~Ll~~l~~~L~~~~~~~e~~~~v 1276 (2058)
.+.++....+...++ +++.++++.+ ..+..+...+....+ ..+|++++|.+...+.++. . ...+
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~-~---~~~~ 146 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-S---TEHM 146 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-C---CHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCC-C---CHHH
Confidence 111122233444444 5677777777 777777666666544 3789999999999886521 0 1268
Q ss_pred HHHHHHHHHHHHhHhcc--CCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccch-----HH-HHHHHHHHH
Q 000143 1277 REGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLDQL 1346 (2058)
Q Consensus 1277 R~~av~~Lg~La~~l~~--~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~~-----~~-~v~~Ll~~L 1346 (2058)
|+.++.+++.+++.+.. ..+++..+++.+...+.++ +..+|..+.+|+..++...+... .. +++.+.+ +
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~-~ 225 (876)
T 1qgr_A 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-A 225 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H
Confidence 99999999999986532 1356788999999999887 68999999999988776543221 12 3444444 4
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------- 1411 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg------------- 1411 (2058)
..++++.+|..+..++..++...+....+ -. .+++.+...+.+. +..+|..++..+..+++...
T Consensus 226 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence 45667899999999999999876533221 11 5777777777665 78899999998888886531
Q ss_pred --------ccchhhHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1412 --------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1412 --------~~~~p~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
....+++..++|.++..+. |++..+|.+|..+++.++..++...++.++|.+...+.+.+|++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHH
Confidence 1234567788999988875 3467899999999999999888766788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+++.++|.++.+.+ +.+.++++.++|.+...++|+++.||.+|+++++++++.+++..
T Consensus 385 ~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--------------------- 443 (876)
T 1qgr_A 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--------------------- 443 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT---------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc---------------------
Confidence 99999999998876 66788999999999999999999999999999999998754200
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC------------CCCchhhhHhhhhHH
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLPE 1623 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~------------~~~~l~pyl~~ll~~ 1623 (2058)
...+.+..++|.+...+.+. +.+|..++.++++++...+ ....+.||++.++|.
T Consensus 444 -------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~ 509 (876)
T 1qgr_A 444 -------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQK 509 (876)
T ss_dssp -------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHH
Confidence 00112333455555555553 6677778888888876543 124578999999999
Q ss_pred HHHhhCCC---CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhccc----------CCC----hHHHhhHHHHHH
Q 000143 1624 VKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGLS 1683 (2058)
Q Consensus 1624 L~~~l~d~---~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~----------d~~----~~~R~~aa~~L~ 1683 (2058)
+...+.+. .+.+|..+.++++.++...|.+ +.+.++|.+++.+.. +.+ ...|..+..+++
T Consensus 510 L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 589 (876)
T 1qgr_A 510 LLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQ 589 (876)
T ss_dssp HHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Confidence 99998865 4689999999999999999876 445777777766652 222 335677888999
Q ss_pred HHHHHhc-hh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHH
Q 000143 1684 EVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDA 1756 (2058)
Q Consensus 1684 ~i~~~~g-~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~ 1756 (2058)
.++..+| .. +++.++|.++..+.+.. +.+|+.++.+++.++...|..|.||++.++|.+...+.+. ++.+|..
T Consensus 590 ~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~ 669 (876)
T 1qgr_A 590 NVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLA 669 (876)
T ss_dssp HHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9998888 43 66888999998888764 5899999999999999999999999999999999999886 7889999
Q ss_pred HHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHH
Q 000143 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEV 1836 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~ 1836 (2058)
+..+++.++...+.. +.|.+. .++..+ .+.
T Consensus 670 a~~~l~~l~~~~~~~----~~~~~~---------------~i~~~l-------------------------------~~~ 699 (876)
T 1qgr_A 670 AVGLVGDLCRALQSN----IIPFCD---------------EVMQLL-------------------------------LEN 699 (876)
T ss_dssp HHHHHHHHHHHHGGG----GHHHHH---------------HHHHHH-------------------------------HHH
T ss_pred HHHHHHHHHHHHHHh----hhhhHH---------------HHHHHH-------------------------------HHH
Confidence 999888887766532 111110 011111 111
Q ss_pred hChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC-----------HHHHHHH
Q 000143 1837 LGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVA 1905 (2058)
Q Consensus 1837 Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-----------~~~R~~A 1905 (2058)
+.. .+.+..+|..+..+++.++...+..+.++++.+++.+...+.++. ..+|..+
T Consensus 700 l~~--------------~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~ 765 (876)
T 1qgr_A 700 LGN--------------ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC 765 (876)
T ss_dssp HTC--------------TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred hCC--------------ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Confidence 110 012234677777888888777777778889999998888776542 2789999
Q ss_pred HHHHHHHHHHhCcc-------------hhhchHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhChhhhHhH-HhhHHHH
Q 000143 1906 GRALGELVRKLGER-------------VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPT 1969 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~-------------~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~-~~~ll~~ 1969 (2058)
..+++.++..+|.. +++.+++.+.....++ +..+|..++.++++++...|...+.+| .+.+++.
T Consensus 766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ 845 (876)
T 1qgr_A 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHE 845 (876)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHH
Confidence 99999999887641 2355566665555666 678999999999999999976356777 4778888
Q ss_pred HHH-HhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1970 IRT-ALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1970 L~~-~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+.. .+.|+++++|++|++|+|.+.+.
T Consensus 846 ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 846 LLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence 888 89999999999999999999864
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.5e-35 Score=395.67 Aligned_cols=564 Identities=19% Similarity=0.223 Sum_probs=454.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l 1418 (2058)
+..+++.+.+ +++.+|..|+..++.++...|+... ...++|.|.... ++ ++.+|..+..+++.+....+. ..|.
T Consensus 12 i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~~~ 85 (588)
T 1b3u_A 12 IAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PEYV 85 (588)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GGGG
T ss_pred HHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HHHH
Confidence 5666776654 4689999999999998887776543 236888888766 43 788999988888776665543 3466
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
..++|.+...+.|+++.||..|..++..++..++++.+ +.++|.+.....+++|..|..++.+++.++...+.. ..
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~ 162 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VK 162 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HH
Confidence 77888888888999999999999999999998887766 456677766667888999999999999998877654 34
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
+.++|.+...++|+++.||.+|+.+|+.+++.++++ +...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--------------------------------------- 203 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT---------------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHH---------------------------------------
Confidence 678899999999999999999999999999876542 1233
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-Cc
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~ 1655 (2058)
++|.+...++|.++.+|..|+.+++.++..+++ ..+.+.++|.+...+.|++|.+|..++.++|.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677777788888887765322 2345567888888888999999999999999999888765 34
Q ss_pred cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1656 ~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
++++|.+.+.++ |+++.+|..++.+++.++..+|.+ +.+.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 678888888776 567778999999999998888764 56789999999999999999999999999999999975
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc-hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCC
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~-l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~ 1809 (2058)
. +.+.++|.+...+.|++++||..++.++..+...++... .+.++|.+...+.|.+|++|..+++.++.+...
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~---- 432 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---- 432 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----
Confidence 4 467789999999999999999999999999988766442 356899999999999999999999999887522
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhChhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 000143 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2058)
Q Consensus 1810 ~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~-~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~ 1888 (2058)
+|.+++ +.+++.+...+.|.+..||.+|...++.++...+.. .+.+.+++
T Consensus 433 ---------------------------~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 433 ---------------------------LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp ---------------------------HCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred ---------------------------cCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 232222 245666666788999999999999999998766543 24566777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHH
Q 000143 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2058)
Q Consensus 1889 ~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll 1967 (2058)
.+.....++++.+|..++.+++.++..+|.. +.+.++|.+.+.++|+++++|..++.+++.+....+.+.+ .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 7777788999999999999999999988865 5689999999999999999999999999999988876432 26788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1968 PTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1968 ~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
|.+..++.|+|++||++|..|++.+.
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 88988889999999999999998763
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.3e-32 Score=387.56 Aligned_cols=714 Identities=14% Similarity=0.149 Sum_probs=552.5
Q ss_pred HHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCC--CCHHHHHHHHHhhHhhHhh---------------cccchHH
Q 000143 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQS---------------MQDEAPT 1337 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~--~~~~V~~av~~~L~~l~~~---------------~~~~~~~ 1337 (2058)
.+|..|...|..+... ..+.+...|+..+.+ .+..+|..++.++...+.. +.+....
T Consensus 16 ~~r~~A~~~L~~~~~~------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~ 89 (876)
T 1qgr_A 16 LELEAAQKFLERAAVE------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89 (876)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhc------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHH
Confidence 6899999988887642 134566777777766 4578888888777765421 1222223
Q ss_pred HH-HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cccchhchHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc-cc
Q 000143 1338 LV-SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRN-SAKRREGALLAFECLCEKLG-RL 1413 (2058)
Q Consensus 1338 ~v-~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~l~~~~il~~L~~~l~~~~-~~~~R~~al~al~~L~~~lg-~~ 1413 (2058)
.+ ..+++.+.+ ++..+ ..++.+++.++...++ ..+ .++++.+.+.+.+++ ++.+|++++.+++.+++.++ +.
T Consensus 90 ~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w--~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 90 EVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHhhCccccc--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 33 345555544 44556 8899999999987654 333 489999999998764 78999999999999998763 55
Q ss_pred chhhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhhhhh----hH-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQ--VVAVREAAECAARAMMSQLSAQ----GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~--~~~VR~aA~~al~~l~~~l~~~----~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
+.+++..+++.+...+.|+ +..||..|.+++..++..++.. .. ..+++.+.+.+.+.++.+|..++..++.++
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999987 6899999999999987654432 11 347788888888889999999999999999
Q ss_pred hhChhhHhhhhh-hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC------------------------chhHHhHHHH
Q 000143 1487 YCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------------------NPEIASLVPT 1541 (2058)
Q Consensus 1487 ~~~p~~l~~~L~-~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~------------------------~~~i~~lvp~ 1541 (2058)
...++.+.+++. .+++.+...+.|.++.||..|++.+..+++... .+++..++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 999999999999 999999999999999999999999998886420 1234678888
Q ss_pred HHhccC-------CCChhHH-HHHHHHHhc-cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1542 LLMGLT-------DPNDHTK-YSLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1542 Ll~~l~-------d~~~~vr-~al~~L~~~-~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
++..+. |.++.+| .+..++... ...+ ...+..++|.+...+.+.+|.+|..++.+++.++... .++.
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHH
Confidence 888774 2345566 344444331 1111 2345678888889999999999999999999988642 2245
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc-----cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~-----~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
+.+|++.++|.+...+.|+++.||..|+.+++.++...++ .+++.+++.++..+.+ . ..+|..++.+++.++.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-E-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-C-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998765 4778899999999875 3 6689999999999998
Q ss_pred Hhc-----------------hhHHHHhhHHHHHhhccC---ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1688 ALG-----------------TVYFEHILPDIIRNCSHQ---RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1688 ~~g-----------------~~~l~~llp~Ll~~l~~~---~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.++ ..+++.++|.++..+.+. +..+|..++.+++.++...|.++.+|+..++|.++..+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 559 (876)
T 1qgr_A 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559 (876)
T ss_dssp HHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHH
Confidence 876 126788999999888765 468999999999999999999999999999999988765
Q ss_pred C-----------CC----HHHHHHHHHHHHHHHHHhc-cc---chhchHHhHhhhcCCCC--HHHHHHHHHHHHHHHHHh
Q 000143 1748 D-----------EN----ESVRDAALGAGHVLVEHYA-TT---SLPLLLPAVEDGIFNDN--WRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1748 d-----------~~----~~VR~~a~~al~~lv~~~~-~~---~l~~llp~L~~~l~d~~--~~vR~sav~ll~~Ll~~~ 1806 (2058)
+ ++ +++|..++.++..++..++ .. .++.++|.+...+.+.+ +.+|..++.+++.++...
T Consensus 560 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 2 22 4678888999998887766 32 34557888888887664 578999999888876331
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhHHHhHHH
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~-~~~VR~aA~~~l~~lv~~~~~~l~~~l~~ 1885 (2058)
. . .+ ..+.+.+++.+...+.+. ...+|..|..+++.++...+..+.++++.
T Consensus 640 ~-~--------------------------~~-~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 640 G-G--------------------------EF-LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp G-G--------------------------GG-GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred H-h--------------------------hH-HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 1 0 00 012234555555555555 78899999999999998777788899999
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCC-----------hhHHHHHHHHHHH
Q 000143 1886 LMNTLISSLAS--SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS-----------ASRRQGVCIGLSE 1949 (2058)
Q Consensus 1886 L~~~l~~~L~~--~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~-----------~~vR~~a~~aL~e 1949 (2058)
+++.+...+.+ .+.++|..++.++|.++..+|+. +++.++|.+.+.++++. ..+|.++..+++.
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~ 771 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTG 771 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 46789999999999999999876 36788888888776442 2688899999998
Q ss_pred HHHhhCh---------hhhHhHHhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCh-h---h-HHHHHHHHHH-hc
Q 000143 1950 VMASAGK---------SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGM-Q---A-IDEIVPTLLH-AL 2012 (2058)
Q Consensus 1950 ii~~~~~---------~~l~~~~~~ll~~L~~~L~D~--d~~VR~~Aa~a~~~l~~~~g~-~---~-~~~ilp~Ll~-~L 2012 (2058)
++...+. +.+.+|++.+++.+.....|+ +..||..|+.++|.+....|. . + .+.+++.++. .+
T Consensus 772 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 772 IVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 8877653 467889999998888877777 789999999999999999886 3 2 3568999999 88
Q ss_pred CCCc--chHHHHHHHHHHHhhc
Q 000143 2013 EDDQ--TSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2013 ~~~~--~~~~al~aL~~i~~~~ 2032 (2058)
.+++ .|.+|..|++.+.+..
T Consensus 852 ~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 852 RSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHhHHHHHHHHHHHHHHhh
Confidence 6654 6889999999888654
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1e-32 Score=370.20 Aligned_cols=556 Identities=17% Similarity=0.207 Sum_probs=456.5
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~i 1301 (2058)
..+.++++.+|..++..+..+....|+ ..+++++|.+...+ + ++ +.+|..+...||.++.++... .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d----~~--~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-Y----DE--DEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-C----CC--HHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-C----Cc--HHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 568899999999998887776665554 34678889887654 1 12 268999999999888766432 345667
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchH
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il 1380 (2058)
++.|...+.++++.||..+..++..+....++. ....+..++..+.+++++..|..|+..++.++...+... ...++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 777777778899999999999999988765432 344455566667777788999999999999887776433 23688
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhH
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 1459 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~l 1459 (2058)
+.+.+.+.|+ ++.+|..++.+++.+++..|. +.+...++|.+...++|+++.||..|..+++.++...+++.. +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888776 899999999999999988775 456778999999999999999999999999999988877654 678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hh
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PE 1534 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~ 1534 (2058)
+|.+...+.|++|++|..++.++|.++...+.. .+.+.++|.+...++|+++.||.+|+++++.++..++. ++
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 899999999999999999999999999865443 23467899999999999999999999999999998865 35
Q ss_pred HHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1535 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
...++|.+...+.|+++.+|. ++.+++.. ..... ......++|.+...++|+++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l--~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGL--SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGG--HHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---
Confidence 688999999999999999984 44444431 11111 122456889999999999999999999999998875432
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.++|.++..+. |..+.+|..++.+++.++..+|.
T Consensus 397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhCc
Confidence 235567889999999999999999999999999999998744 578999988887 56677999999999999999998
Q ss_pred h-HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 V-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~-~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+ +.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..++++++.+...++.
T Consensus 475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7 457899999988889999999999999999999998764 8899999999999999999999999999999877765
Q ss_pred cch-hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1771 TSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1771 ~~l-~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
... +.++|.+.+.+.|.++.+|..+.+.++.+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 543 45889898888999999999999988764
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=2.8e-22 Score=268.37 Aligned_cols=310 Identities=26% Similarity=0.477 Sum_probs=280.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--~~~~ 1415 (2058)
.+..+++.+..++ ...++.++..++.++.+-+........+++.+...+.++++. ++|+.+++.+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 4455666666554 566788999999998865444333357888999999887666 999999999997665 4789
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
||+-.++|.++..++|....||.+|..++..++..++++.++.++|.+++.+.+. .|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999855 699999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
.++|+++|.+.+++.|..++|..+|..++..++..+.|.++...+|.|++++.+|+ .+.+|+..|+.++|+..++.|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~-~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT-EVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT-HHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh-hhHHHHHHhhcCeeEeeecchhH
Confidence 99999999999999999999999999999999999999999999999999999995 58899999999999999999999
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+.+.|.|.++|++++..++++++-+++|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998764 6899999999999999876554
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.88 E-value=1.8e-18 Score=244.08 Aligned_cols=649 Identities=12% Similarity=0.119 Sum_probs=408.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcC--C
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYG--Y 1126 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~--~ 1126 (2058)
.++.++|.++++||..+| |++.|++.. ..+.....+..+. ...+.+..+|..|.. -|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il-~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVI-ASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 467888999999999999 999998763 1123333444443 233456788888754 365211 1
Q ss_pred CCC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHH
Q 000143 1127 DFG----TDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2058)
Q Consensus 1127 ~~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~a 1200 (2058)
.++ ..+ ..+++.+.+++..+|..++.+++.++.. +|+.|+++++.|.+.+. + .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----N------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----S------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----C------CCHHHHHHHHHH
Confidence 122 234 6788888777799999999999999864 78889999998886531 1 223578899999
Q ss_pred HHHhhhhhCC--C--C----h--------HHHHHHHH--HhhccCCCH---HHHH--HHHHHHHHHHHh---h--C---c
Q 000143 1201 LHSAADVLRT--K--D----L--------PVIMTFLI--SRALADTNA---DVRG--RMLNAGIMIIDK---H--G---R 1249 (2058)
Q Consensus 1201 l~~l~~~~~~--~--~----~--------~~l~~~Li--~~~L~d~~~---~VR~--~al~a~~~~i~~---~--g---~ 1249 (2058)
+..+++.... . + . +.++..+. ..++.+... .+|. .++.....++.. . + .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999876542 1 1 1 11112221 123554422 2442 111222222211 1 1 1
Q ss_pred cchhhHHHHHHHHhcccCC----C--h---hHHHHHHHHHHHHHHHHHhHhcc-CCcchHHHHHHHHhhhC-----CCCH
Q 000143 1250 DNVSLLFPIFENYLNKKAS----D--E---EKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLN-----TPSE 1314 (2058)
Q Consensus 1250 ~~~~~Ll~~l~~~L~~~~~----~--~---e~~~~vR~~av~~Lg~La~~l~~-~~p~i~~iv~~Ll~~L~-----~~~~ 1314 (2058)
+++...++.|...+....+ + + .....+|..++.++..+++...+ -.|+++.+++.+++.+. ..++
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 3456667777777654211 1 0 12235788889999988864332 23567777777776664 2345
Q ss_pred HHHHHHHHhhHhhHhhc------c--cchHHHH-HHHHHHHh----------------------cCCCHHHHHHHHHHHH
Q 000143 1315 AVQRAVSSCLSPLMQSM------Q--DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGLA 1363 (2058)
Q Consensus 1315 ~V~~av~~~L~~l~~~~------~--~~~~~~v-~~Ll~~L~----------------------~~~~~~vR~~Aa~~L~ 1363 (2058)
.+...+.+.+..++..- . +....++ ..++..+. .++.+..|++|..+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 55555555544443211 1 1122333 22222221 1223568999999999
Q ss_pred HHHhhhCccccchhchHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHh-----c-c------cchhhHHHHHHHHH
Q 000143 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1364 ~l~~~~g~~~l~~~~il~~L~~~l~~-----~~~~~~R~~al~al~~L~~~l-----g-~------~~~p~l~~llp~Ll 1426 (2058)
.++...|...++ .+++++.+.+.. ..+|+.|++|+.+++.++++. + . .+.+++.. .++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~---~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK---EIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH---HTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH---HhH
Confidence 999988743332 567777776651 348999999999999998642 1 1 34444332 233
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh-----------Chhh
Q 000143 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2058)
Q Consensus 1427 ~~l~D~---~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-----------~p~~ 1492 (2058)
..+.|+ ++.||..|+++++++...+.++....++|.+++.+.+++.++|..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 344555 89999999999999998887777789999999999999999999999999999873 2456
Q ss_pred HhhhhhhHHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
+.+|++.+++.+..+++... +. ....+..+++.++...++ |++..+++.+...+
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l------------------ 603 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV------------------ 603 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH------------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------
Confidence 89999999999999987641 11 346777888887776553 34444444443322
Q ss_pred ccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
....+ ..+...+..++++++.++.. ..+..+.++.+.++|.+...+.....+....+...+
T Consensus 604 -----------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 604 -----------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp -----------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred -----------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 11112 23455666678888888875 355677888999999999998877677888888888
Q ss_pred HHHHHhhc--ccCccchHHHHH--hhcccCCChHHHhhHHHHHHHHHHHhchhHH--HHhhHHHHHhhccCChhHHHHHH
Q 000143 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2058)
Q Consensus 1644 g~l~~~lg--~~~~~~llp~L~--~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~Ll~~l~~~~~~vR~~al 1717 (2058)
+.+..... .+++..++|.+. ..+... . .-......+..++...+.... +.++..+...+.+.. .+..++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELK-G--NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-T--THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCC-C--CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 88887651 125667777776 555432 1 122334445444433332211 222322222233333 347889
Q ss_pred HHHHHhHHHhchh-HHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhc
Q 000143 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1718 ~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~ 1769 (2058)
.+++.++..+|.+ |.||++.+++.++..+..+ .+..+...+..+..++..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcC
Confidence 9999999999988 9999999999999998765 45566555555555443443
No 13
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.88 E-value=5.2e-19 Score=250.87 Aligned_cols=720 Identities=13% Similarity=0.120 Sum_probs=421.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCCC
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~~ 1128 (2058)
.++.+++..+.+||++.|..|.+.|++.... +....+...+ ...+.++.+|..|.. .|.....+.
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 3466677778889999999999999887511 2222233333 344567788877754 365544333
Q ss_pred CCCH-HhHHHHhcC---CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHH
Q 000143 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2058)
Q Consensus 1129 ~~~~-~~ll~~l~~---~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~ 1203 (2058)
...+ ..+++.+.+ ....||+..+.+++.++.. +| .|++.+..+......... +. -++...+..+...+..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~-~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PN-VSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---cc-CCCHHHHHHHHHHHHH
Confidence 3344 667766643 2589999999999999865 56 888888888876542100 00 0112355666666666
Q ss_pred hhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCC--ChhHHHHHHHHHH
Q 000143 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2058)
Q Consensus 1204 l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~--~~e~~~~vR~~av 1281 (2058)
+++-+ . ...-.++...++.. + ..+++.+++++..++..... .++....++..++
T Consensus 155 l~EEi--------~----~~~~~~~r~~~~~~--------l----~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEA--------Q----VIHTSVKRVVLRAE--------I----AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHH--------H----HCCCSSCHHHHHHH--------H----HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHH--------h----ccCcHHHHHHHHHH--------H----HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 55311 0 00000111111111 1 13456677777776654211 1111225788899
Q ss_pred HHHHHHHhH--hccCCcchHHHHHHHHhhh----------------CCCCHHHHHHHHHhhHhhHhhcc-cc----hHHH
Q 000143 1282 IFTGALAKH--LAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2058)
Q Consensus 1282 ~~Lg~La~~--l~~~~p~i~~iv~~Ll~~L----------------~~~~~~V~~av~~~L~~l~~~~~-~~----~~~~ 1338 (2058)
.+++....+ ++.. ....+++.++. | .++++.++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 999887763 3322 34566666666 4 11456788889999998886421 11 2233
Q ss_pred HHHHHHH---Hh---cCCCH---HHHHHHHHHHHHHHhhhCcc-----------ccc-hhchHHHHHHHHhC----CCCH
Q 000143 1339 VSRLLDQ---LM---KSDKY---GERRGAAFGLAGVVKGFGIS-----------SLK-KYGIAATLREGLAD----RNSA 1393 (2058)
Q Consensus 1339 v~~Ll~~---L~---~~~~~---~vR~~Aa~~L~~l~~~~g~~-----------~l~-~~~il~~L~~~l~~----~~~~ 1393 (2058)
++.++.. +. ..++. ......+..+..+....... ... -..+++.+...... .++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 3333321 11 22232 44445555555544321000 000 01445555555433 2366
Q ss_pred HHHHHHHHHHHHHHHHh------------cccchhhHHHHHHHHHHHcC---CC-----C-------HHHHHHHHHHHHH
Q 000143 1394 KRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFS---DQ-----V-------VAVREAAECAARA 1446 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~l------------g~~~~p~l~~llp~Ll~~l~---D~-----~-------~~VR~aA~~al~~ 1446 (2058)
.++..++..+..+++.. ...+.|++.++++.++..+. |+ + ...|.++.+++..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 78888888888887632 12356788888888887763 11 1 1478888899988
Q ss_pred HHHhhhhhhHHhHHHHHHHhccC-----CChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh-cCCCHHHHHHHH
Q 000143 1447 MMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAGQ 1520 (2058)
Q Consensus 1447 l~~~l~~~~v~~llp~Ll~~L~~-----~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L-~D~~~~VR~aA~ 1520 (2058)
++..++...+..+++.+.+.+.. .+|+.|.+++.++|.+++++++...++++.+++.+..+. .|+++.||..++
T Consensus 448 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~ 527 (971)
T 2x1g_F 448 CYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTAL 527 (971)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHH
Confidence 88877755556777776666653 789999999999999999988777788888888444433 267999999999
Q ss_pred HHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000143 1521 TALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2058)
Q Consensus 1521 ~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~ 1598 (2058)
++++++++.+.+ .++..+ +|.+..++ + +.++..|+.
T Consensus 528 ~~l~~~~~~l~~~~~~l~~v---------------------------------------l~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 528 ETMGSYCNWLMENPAYIPPA---------------------------------------INLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHTHHHHC----CHHHH---------------------------------------HHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHH---------------------------------------HHHHHHHh-C--hHHHHHHHH
Confidence 999999987652 123333 33333334 2 356778888
Q ss_pred HHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcc----c
Q 000143 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2058)
Q Consensus 1599 ~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~----~ 1668 (2058)
++.++++.. ...+.||++.++..+..++.. .+...+..+.+++|.++...+.+ ++..+++.+++.+. .
T Consensus 566 al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888743 356889999999999999886 35789999999999999877632 55566666655443 2
Q ss_pred CC-ChHHHhh---HHHHHHHHHHHhch----------------hHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHH
Q 000143 1669 DN-SNVERSG---AAQGLSEVLAALGT----------------VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRS 1726 (2058)
Q Consensus 1669 d~-~~~~R~~---aa~~L~~i~~~~g~----------------~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~ 1726 (2058)
.. +...+.. +...|+.++..++. .+.+.++|.+...+.+. +..+.+.++.+++.++.+
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 2223333 33445555555542 13567888777766543 678999999999999999
Q ss_pred hchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~ 1806 (2058)
+|.+|.||++.+++.++..+..... ..++..++.++..++.+. .+.+.+. +++..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~--~~~~~l~---------------~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE--GCKPLMQ---------------QLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-------HHHH---------------HHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc--chHHHHH---------------HHHHHHH---
Confidence 9999999999999999988876432 235566666665554420 0111111 1111110
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHH--Hh-H
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-M 1883 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~--~~-l 1883 (2058)
..+...+.... ....+..+.+++.....+..++.+.|..+. +. +
T Consensus 781 ------------------------~~~~~~l~~~~---------~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l 827 (971)
T 2x1g_F 781 ------------------------QHSFKLFESTP---------EQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAY 827 (971)
T ss_dssp ------------------------HHHHHHHTSCT---------TTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCH
T ss_pred ------------------------HHHHHHHhccc---------ccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccH
Confidence 00011111000 000012356777788888888877775553 55 7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2058)
Q Consensus 1884 ~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~ 1915 (2058)
+.+++..+..+..++......+...+..++..
T Consensus 828 ~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 828 DRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 77788777777777766667777888777665
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.87 E-value=6e-18 Score=240.17 Aligned_cols=714 Identities=14% Similarity=0.172 Sum_probs=438.0
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC
Q 000143 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2058)
Q Consensus 1057 ~~l~~ll~~-l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~ 1127 (2058)
.++.+++.. ..++|++.|..|.+.|++.... +....+...+ ...+.+..+|..|.. .|.....+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457777877 4458999999999999876411 1222233333 334567788877754 36554433
Q ss_pred CCCCH-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHH
Q 000143 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2058)
Q Consensus 1128 ~~~~~-~~ll~~l~~---~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~ 1202 (2058)
....+ ..+++.+.+ ....||+..+.+++.++. .+|+.|++.+..|...... ..+. ..+...+..+...+.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~----~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA----EDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh----hccC-CCcHHHHHHHHHHHH
Confidence 33344 667776654 368999999999999986 4788888888888876421 0000 012234556666666
Q ss_pred HhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 000143 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2058)
Q Consensus 1203 ~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~ 1282 (2058)
.+++....... ...|+.. +...-..+++.+++.+..++.+...+ ..++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Confidence 65532211100 0111110 01111234667788888887653211 136777888
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccchHHHHHHHHHHHh----------cCCC
Q 000143 1283 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLM----------KSDK 1351 (2058)
Q Consensus 1283 ~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~~~~~v~~Ll~~L~----------~~~~ 1351 (2058)
++..... +.........+++.+++.+.+ +.++..+.+|+..++... .......+..+++.+. ..++
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQD--SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTTS--TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhCC--chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 8766554 222111126777888877754 457777888988887642 1122223333322211 1223
Q ss_pred HHHHHHHHHHHHHHHhhhCcccc------c-hhchHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh----------
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSL------K-KYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL---------- 1410 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l------~-~~~il~~L~~~l~~----~~~~~~R~~al~al~~L~~~l---------- 1410 (2058)
....+..+..+..+......... . -..+++.+.+...+ ..++.++..++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~ 381 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAV 381 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHH
Confidence 44444445555554432110000 0 01455556555554 224556777777777776632
Q ss_pred -cccchhhHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhc----cCC
Q 000143 1411 -GRLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----EDK 1470 (2058)
Q Consensus 1411 -g~~~~p~l~~llp~Ll~~l~D~~---------------~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L----~~~ 1470 (2058)
...+.|++.++++.++..+..++ ...|.++.+++..+....+.+.+..+++.+.+.+ .+.
T Consensus 382 ~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 461 (963)
T 2x19_B 382 YQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPY 461 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCC
Confidence 13457888888888887664221 1347778888888887777666666777776666 667
Q ss_pred ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCC
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d 1548 (2058)
+|+.|.+++.++|.+++++.+...++++.+++.+.. +.++++.||..++++++++++.+.+ +++..
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~----------- 529 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINS----------- 529 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTT-----------
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH-----------
Confidence 999999999999999998876666777788875443 4556899999999999999986541 22333
Q ss_pred CChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhh
Q 000143 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2058)
Q Consensus 1549 ~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l 1628 (2058)
+++.+..++.+ +.++..|+.++.++++.. +..+.||++.++..+...+
T Consensus 530 ----------------------------vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 530 ----------------------------VLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp ----------------------------THHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHh
Confidence 34444444443 467788888899988743 3568899999999999888
Q ss_pred CC--CCHHHHHHHHHHHHHHHHhhc-cc---CccchHHHHHhhcc----cCCChHHHh---hHHHHHHHHHHHhch----
Q 000143 1629 VD--PIPEVRSVAARAIGSLIRGMG-EE---NFPDLVSWLLDALK----SDNSNVERS---GAAQGLSEVLAALGT---- 1691 (2058)
Q Consensus 1629 ~d--~~~~vR~~a~~aLg~l~~~lg-~~---~~~~llp~L~~~L~----~d~~~~~R~---~aa~~L~~i~~~~g~---- 1691 (2058)
.. -....|..+.+++|.++...+ ++ |+..+++.+.+.+. +..+...+. ....+++.++++++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 74 357899999999999998776 32 56677776666553 222333333 456677788877762
Q ss_pred -----------------h----HHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC
Q 000143 1692 -----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2058)
Q Consensus 1692 -----------------~----~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d 1748 (2058)
+ .++.++|.+...+.. .+..+.+.++.+++.++..+|..|.||++.+++.++.....
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 1 346677766665543 36789999999999999999999999999988888776543
Q ss_pred -CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1749 -ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1749 -~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
+.+ ..+..+..++..++... .+.|.+. ..+..++
T Consensus 738 ~~~~----~~l~l~~~li~~f~~~~--~~~~~~~---------------~~l~~~~------------------------ 772 (963)
T 2x19_B 738 IPQA----SALDLTRQLVHIFAHEP--AHFPPIE---------------ALFLLVT------------------------ 772 (963)
T ss_dssp SCCH----HHHHHHHHHHHHHTTCT--TTCHHHH---------------HHHHHHH------------------------
T ss_pred CCcc----HHHHHHHHHHHHhCCCc--chHHHHH---------------HHHHHHH------------------------
Confidence 121 23333444444332210 0001000 0011110
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHH--Hh-HHHHHHHHHHHhcCCCHHHHHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNTLISSLASSSSERRQV 1904 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~--~~-l~~L~~~l~~~L~~~~~~~R~~ 1904 (2058)
. .++.-+- ...+..+.+|+.....+..++.+.+..+- +. ++.+++.++..+..++.++...
T Consensus 773 ---~------------~~l~~~~-~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 836 (963)
T 2x19_B 773 ---S------------VTLTLFQ-QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKA 836 (963)
T ss_dssp ---H------------HHHHHHH-HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ---H------------HHHHHHh-hCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHH
Confidence 0 0000000 01122467888888888888877765442 44 7778888888899999999999
Q ss_pred HHHHHHHHHHHhC
Q 000143 1905 AGRALGELVRKLG 1917 (2058)
Q Consensus 1905 A~~~Lg~L~~~lg 1917 (2058)
+...+.+++...+
T Consensus 837 ~l~~l~~l~~~~~ 849 (963)
T 2x19_B 837 SCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHGGGTT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987654
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.87 E-value=1.7e-18 Score=244.48 Aligned_cols=707 Identities=11% Similarity=0.105 Sum_probs=419.4
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-hC---
Q 000143 1134 GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR--- 1209 (2058)
Q Consensus 1134 ~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~-~~--- 1209 (2058)
.++....++|..+| |.+.|..+ +..|+.+..+++.+.+ . +.+-.+|..++..|++.... ..
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~-------~-----~~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS-------T-----NLPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34444556677777 66666544 5566544433333321 0 12346788888888876543 21
Q ss_pred ------CCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 000143 1210 ------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283 (2058)
Q Consensus 1210 ------~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~ 1283 (2058)
++....+-..++ .++.+....||..+..+...++....++.|+++++.+.+.+... + . ..+.+++.+
T Consensus 74 ~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~--~--~~~~~aL~~ 146 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--D--M--VTNKGVLTV 146 (960)
T ss_dssp SCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--C--T--THHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--C--H--HHHHHHHHH
Confidence 111223444443 34444558899999888877777655678999999998887542 1 1 357889999
Q ss_pred HHHHHhHhcc--CC----cc----hHHHHHHHHh-------hhCCCCH---HHH------HHHHHhhHhhHhh-c----c
Q 000143 1284 TGALAKHLAK--DD----PK----VHAVVDKLLD-------VLNTPSE---AVQ------RAVSSCLSPLMQS-M----Q 1332 (2058)
Q Consensus 1284 Lg~La~~l~~--~~----p~----i~~iv~~Ll~-------~L~~~~~---~V~------~av~~~L~~l~~~-~----~ 1332 (2058)
+..+++.... .. +. +....+.+++ .+.++.. .++ ..+.+++..+... . .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999976532 11 11 2223333322 2454422 122 2234444433211 1 1
Q ss_pred cchHHHHHHHHHHHhcC----------CC----HHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhC----CCCH
Q 000143 1333 DEAPTLVSRLLDQLMKS----------DK----YGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLAD----RNSA 1393 (2058)
Q Consensus 1333 ~~~~~~v~~Ll~~L~~~----------~~----~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~----~~~~ 1393 (2058)
+.+..+++.+++.+... ++ +.+|+.+..++..+....+....+ -..+++.+.+.+.+ ..+.
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 12344454444444221 01 356788888998888765432211 01344444444431 3355
Q ss_pred HHHHHHHHHHHHHHHHh--cccch--hhHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHHHH
Q 000143 1394 KRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECAAR 1445 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~l--g~~~~--p~l~~ll-p~Ll~~l~-----------------------D~~~~VR~aA~~al~ 1445 (2058)
..+..++..+..+++.- ...|. +++.+++ +.++..+. ++...+|.+|..+++
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 67777777777666421 23454 8888888 66666542 112368999999999
Q ss_pred HHHHhhhhhhHHhHHHHHHHhcc------CCChHHHHHHHHHHHHHHhhC--hh-hHhh-----hhhhH-HHHHHHHhcC
Q 000143 1446 AMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVLTD 1510 (2058)
Q Consensus 1446 ~l~~~l~~~~v~~llp~Ll~~L~------~~~~~~R~~a~~~Lg~la~~~--p~-~l~~-----~L~~I-ip~L~~~L~D 1510 (2058)
.++..++...++.+++.+.+.+. +.+|+.|.+|+.++|.++.+. .+ .... .+..+ ...+...++|
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 99999886666777777777665 678999999999999998642 11 1111 22222 2334555677
Q ss_pred C---CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000143 1511 T---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2058)
Q Consensus 1511 ~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d 1587 (2058)
+ ++.||.+|+++++++++.+...++..+++.++ +.+.|
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~---------------------------------------~~L~d 507 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILA---------------------------------------TFLQT 507 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH---------------------------------------HHTTC
T ss_pred CCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHH---------------------------------------HHhCC
Confidence 7 99999999999999998764334444444444 44445
Q ss_pred CCHHHHHHHHHHHHHHHhhhC---------CCCchhhhHhhhhHHHHHhhCCCC---H--HHHHHHHHHHHHHHHhhccc
Q 000143 1588 RSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1588 ~s~~vr~~A~~~l~~L~~~l~---------~~~~l~pyl~~ll~~L~~~l~d~~---~--~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.+..||..|+.++.++++... ....+.||++.+++.|..++.... . .....+.++++.++..++++
T Consensus 508 ~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~ 587 (960)
T 1wa5_C 508 DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT
T ss_pred CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 556778888888888887422 235688999999999999987641 1 13468899999999988876
Q ss_pred ---CccchHHHHHhhccc----CCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1654 ---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1654 ---~~~~llp~L~~~L~~----d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
|++.+++.+...+.. ..+...+.....+++.++...+++ +.+.++|.+...+........+.++..+..
T Consensus 588 ~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 555666666665542 334455666788888888875554 446778877777776656677777777777
Q ss_pred hHHHhchhHHHhHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHH
Q 000143 1723 LPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2058)
Q Consensus 1723 la~~~g~~f~pyl~~ilp~Ll--~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~ 1800 (2058)
+.... ..|.+|+..++|.+. ..+.... .+ ....+++..++...+.. ++. +
T Consensus 668 l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~~----------~----------- 719 (960)
T 1wa5_C 668 VVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FPD----------L----------- 719 (960)
T ss_dssp HHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CSC----------S-----------
T ss_pred HHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HHH----------H-----------
Confidence 76655 556677777788777 5555432 11 12333333332222111 000 0
Q ss_pred HHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-H
Q 000143 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L 1879 (2058)
Q Consensus 1801 ~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~-l 1879 (2058)
+ .++..+.....+.. .+..+..+++.++.+.+.. +
T Consensus 720 --------------------------~----------------~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~ 755 (960)
T 1wa5_C 720 --------------------------V----------------PVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRL 755 (960)
T ss_dssp --------------------------H----------------HHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHH
T ss_pred --------------------------H----------------HHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHH
Confidence 0 00000000111111 1255667777888878877 8
Q ss_pred HHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCcchh-------------h----chHHHHhhhcCCCChhHHH
Q 000143 1880 KEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL-------------P----SIIPILSRGLKDPSASRRQ 1941 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L~~~lg~~~l-------------~----~llp~L~~~l~d~~~~vR~ 1941 (2058)
.+|+|.+++.++..+..+ ..+.+......++.++-.+|...+ . ..+|.+.+. .....|.
T Consensus 756 ~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~---~~~~erk 832 (960)
T 1wa5_C 756 RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTI---GNLLDRK 832 (960)
T ss_dssp GGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGC---CSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhc---cCHHHHH
Confidence 899999999999888765 455665666666666655554311 1 122222211 2356788
Q ss_pred HHHHHHHHHHHhhC--hhhhHhHHhhHHHHHHHHhcC
Q 000143 1942 GVCIGLSEVMASAG--KSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1942 ~a~~aL~eii~~~~--~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
.++.++..++.... +..+.+....++..+...+..
T Consensus 833 ~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 88888988886541 333445567777777776643
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.85 E-value=2.9e-19 Score=231.72 Aligned_cols=396 Identities=13% Similarity=0.156 Sum_probs=295.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~---- 1207 (2058)
..++..+.+++..+|+.|.+.|..+.+. .|+ ....|...+.. .+.+..+|..++..|+++...
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~----~~~~L~~il~~--------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPT----FLVELSRVLAN--------PGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC--------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHH----HHHHHHHHHHc--------CCCChHHHHHHHHHHHHhccccchH
Confidence 4567777788999999999999886543 233 33333333221 123567999999999987521
Q ss_pred -----------hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1208 -----------~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
++.+....+...++ ..+.+.++.+ ..+..+...+....++ ..|++++|.+...+.+. .. +..
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~-~~---~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-NS---TEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-TC---CHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC-CC---CHH
Confidence 22222334555554 5677777778 7777777666665444 47899999988887652 10 126
Q ss_pred HHHHHHHHHHHHHhHhcc--CCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHH
Q 000143 1276 VREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~--~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L 1346 (2058)
+|+.++.+++.+++.+.. ..+++..+++.++..+.++ +..||..+.+|+..++....+. ...++-..+..+
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 899999999999986532 2467888999999999998 7999999999998866543221 223333333345
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL-------------- 1410 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l-------------- 1410 (2058)
..++++.+|..++.++..++...+....+ .. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 56667999999999999999876532111 12 6788877777776 8899999999999998753
Q ss_pred -------cccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1411 -------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1411 -------g~~~~p~l~~llp~Ll~~l~D-------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
...+++|+..++|.++..+.+ ++..+|.+|..+++.++..++...++.++|.+.+.+.+.+|++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 123567888999999988853 346899999999999999988656688999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhccC
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLT 1547 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l~ 1547 (2058)
+++.++|.++.++. +.+.++++.++|.+...++|+++.||.+|+++|+++++.+++ ++++.++|.++..++
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999998765 567888999999999999999999999999999999998764 567888888877653
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.83 E-value=1.9e-18 Score=223.90 Aligned_cols=390 Identities=16% Similarity=0.239 Sum_probs=297.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHh-------------
Q 000143 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG------------- 1649 (2058)
Q Consensus 1585 L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~------------- 1649 (2058)
+.+.+.++|+.|.+.+..+... + .+.....+...+.+ .++.+|..|+..|..+...
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 4466788999999888876541 1 12233444444444 3689999999999988632
Q ss_pred --hcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhH
Q 000143 1650 --MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1650 --lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la 1724 (2058)
++++....+-..+++.+.+++.. + ..++.+++.++...+++ ..++++|.+...+.++ ++.+|++++.+++.++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 22333344666677777755444 5 78899999999887664 6688999999999988 8999999999999999
Q ss_pred HHh-chhHHHhHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhccc----c-hhchHHhHhhhcCCCCHHHHHHHH
Q 000143 1725 RSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1725 ~~~-g~~f~pyl~~ilp~Ll~~L~d~--~~~VR~~a~~al~~lv~~~~~~----~-l~~llp~L~~~l~d~~~~vR~sav 1796 (2058)
... +..+.+|.+.+++.++..+.|+ ++.||..+++++..++..+... . .+.+++.+.+.+.+.++.+|..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 876 6667889999999999999998 7999999999998865432211 1 123577777778888999999999
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~-~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~ 1875 (2058)
+.++.+....... ++ .+.. .+++.+.....|....||..++..|..++...
T Consensus 239 ~~l~~l~~~~~~~---------------------------~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 239 QNLVKIMSLYYQY---------------------------ME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHCGGG---------------------------CT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------------------HH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 9999986432110 00 1111 33344444456778899999999998887542
Q ss_pred ---------------------hhhHHHhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhCcchhhchHHH
Q 000143 1876 ---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2058)
Q Consensus 1876 ---------------------~~~l~~~l~~L~~~l~~~L~~-------~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~ 1927 (2058)
...++.+++.+++.++..+.+ +++.+|..|..+++.++..+|+.+++.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~ 370 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 123445667788877777643 3568999999999999999998888999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh-----hhHH
Q 000143 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2058)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~-----~~~~ 2002 (2058)
+...++++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||.+|+.+++.+....+. ++++
T Consensus 371 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (462)
T 1ibr_B 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 99999999999999999999999887765567788899999999999999999999999999999988765 4677
Q ss_pred HHHHHHHHhcC
Q 000143 2003 EIVPTLLHALE 2013 (2058)
Q Consensus 2003 ~ilp~Ll~~L~ 2013 (2058)
.++|.|+..|.
T Consensus 451 ~ll~~Ll~~L~ 461 (462)
T 1ibr_B 451 PLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhc
Confidence 88888887764
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.80 E-value=2.5e-15 Score=213.84 Aligned_cols=789 Identities=10% Similarity=0.086 Sum_probs=443.6
Q ss_pred hcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhh
Q 000143 1052 LGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDR 1123 (2058)
Q Consensus 1052 ~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~ 1123 (2058)
...+..++.+++..+.+|+.+.|..|.+.|++... . +....+...+. ..+.+..+|..|.. .|..
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~---p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--N---PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--S---TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--C---chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 33455678889999999999999999999987741 1 12233344442 33557788877754 3654
Q ss_pred cCCCCCCCH-HhHHHHhcCC---------CHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCch
Q 000143 1124 YGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2058)
Q Consensus 1124 ~~~~~~~~~-~~ll~~l~~~---------~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 1192 (2058)
.+.+....+ ..+++.+.+. +..+|+..+.+++.++.. +|+.|++.++.|.+... .+..
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-----------~~~~ 152 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-----------SSVN 152 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-----------TCHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-----------cChH
Confidence 333323345 6677766532 478999999999999865 78889999998887642 1113
Q ss_pred hhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhH
Q 000143 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272 (2058)
Q Consensus 1193 ~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~ 1272 (2058)
.+..+..+|..+++.+..- .-.+.... |..-++ ..+. .+++.+++.+...+.+. .
T Consensus 153 ~~~~~l~~L~~l~eev~~~------------~~~~~~~~-r~~~lk---~~l~----~~~~~i~~~~~~~l~~~-~---- 207 (1049)
T 3m1i_C 153 VCENNMIVLKLLSEEVFDF------------SAEQMTQA-KALHLK---NSMS----KEFEQIFKLCFQVLEQG-S---- 207 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTS------------CTTTSCHH-HHHHHH---HHHH----HHHHHHHHHHHHHHHHC-C----
T ss_pred HHHHHHHHHHHHHHHHHHh------------cchhhhhH-HHHHHH---HHHH----HHHHHHHHHHHHHHHhc-C----
Confidence 4666677776665432110 00011111 111111 1111 13556777777776652 1
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccc-------hHHHHHHHHH
Q 000143 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSRLLD 1344 (2058)
Q Consensus 1273 ~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~-------~~~~v~~Ll~ 1344 (2058)
...++..++.+++.....++.....-..+++.+++.+. .++.++.++.+|+..++... ++. +..+++.+++
T Consensus 208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 12578888888887665333110000123343442221 25788888999998887542 221 1222233343
Q ss_pred HHhc-----------------CCCHHHHHHHHHHHHHHHhhhC-----ccccch--hchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1345 QLMK-----------------SDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1345 ~L~~-----------------~~~~~vR~~Aa~~L~~l~~~~g-----~~~l~~--~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
.+.. +.+.......+..+..+..... ...... ..+++.+......+ +..++..++
T Consensus 287 ~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~~l 365 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKTTL 365 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHHHH
T ss_pred HHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHHHH
Confidence 3211 2233334444444444433210 000111 13566666655555 778888888
Q ss_pred HHHHHHHHHh------cccchhhHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHHhhh
Q 000143 1401 LAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1401 ~al~~L~~~l------g~~~~p~l~~llp~Ll~~l~D~-------------------~---~~VR~aA~~al~~l~~~l~ 1452 (2058)
..+..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..+....+
T Consensus 366 efw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~ 445 (1049)
T 3m1i_C 366 DYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV 445 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH
Confidence 8888888732 2457789999999988765211 1 1457788889998886655
Q ss_pred hhhHHhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhc-----CCCHHHHHHHHHHHH
Q 000143 1453 AQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQ 1524 (2058)
Q Consensus 1453 ~~~v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~-----D~~~~VR~aA~~aL~ 1524 (2058)
...+..+++.+-+.+. +.+|+.|.+++.++|.++.++..... .+++.+++.+..... |+++.||..++++++
T Consensus 446 ~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 5555666777766665 46899999999999999987766543 458888888877542 567888888999999
Q ss_pred HHHhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1525 QVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1525 ~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
++++.+.+ + ++.. +++.+..++.+.++.++..||.++.+
T Consensus 526 ry~~~~~~~~~~l~~---------------------------------------vl~~ll~~l~~~~~~V~~~A~~al~~ 566 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLRT---------------------------------------VILKLFEFMHETHEGVQDMACDTFIK 566 (1049)
T ss_dssp HCHHHHHHCHHHHHH---------------------------------------HHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH---------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99876532 1 2233 34444445555566777888888888
Q ss_pred HHhhhC------CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc-c----CccchHHHHHhhcccCCC
Q 000143 1603 MCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-E----NFPDLVSWLLDALKSDNS 1671 (2058)
Q Consensus 1603 L~~~l~------~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~-~----~~~~llp~L~~~L~~d~~ 1671 (2058)
+++... .+.++.||++.++..+..++.+...+-+....+|+|.++...|. + ++..+++.+.+.+.
T Consensus 567 l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~---- 642 (1049)
T 3m1i_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD---- 642 (1049)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH----
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 776422 11233499999999999988887777778889999999987763 2 22222222222211
Q ss_pred hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-Chh-HH--HHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~-vR--~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.+. .....+..+. ++. ++ ...+.++..++..+|..|.|++..+++.++..+.
T Consensus 643 ------------~~~------------~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 643 ------------TIV------------EQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1049)
T ss_dssp ------------HHH------------HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred ------------HHH------------HHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111 0000000100 111 12 2346677888899999999998887776654332
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1748 DENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~lv~~~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
.- ...+...+...+..... ..+..+. .+......++..+..+. + ..
T Consensus 699 ~~--------~~~~~~~~~~~g~~~~~~p~~~~~~--------~~~~~l~~ll~~~~~~~-------------~----~l 745 (1049)
T 3m1i_C 699 AV--------SSMISAQVAAEGLIATKTPKVRGLR--------TIKKEILKLVETYISKA-------------R----NL 745 (1049)
T ss_dssp HH--------HHHHHHHHHHHCGGGGGSHHHHHHH--------HHHHHHHHHHHHHHHHC-------------S----CH
T ss_pred HH--------HHHHHHHHHccCchhhhhHHHHHHH--------HHHHHHHHHHHHHHHhC-------------C----CH
Confidence 10 01111111111110000 0000000 01111111222211100 0 00
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH----hc---CCC
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISS----LA---SSS 1898 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR-~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~----L~---~~~ 1898 (2058)
+.... .+.+..+..++..........| ..++.+++.++...+..+.++++.+++.+..+ +. ++.
T Consensus 746 ~~~~~--------~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~ 817 (1049)
T 3m1i_C 746 DDVVK--------VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1049)
T ss_dssp HHHHH--------HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHHHH--------HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhC
Confidence 11000 1111222222111100000000 23556666677666666667777777666654 32 467
Q ss_pred HHHHHHHHHHHHHHHHHhCcch-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh----hh----hHhHH
Q 000143 1899 SERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK----SQ----LLSFM 1963 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~----~~----l~~~~ 1963 (2058)
+++|......++.+++++...+ +..++.....+++.+++++...++..+.+++..... +. ...|.
T Consensus 818 pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~ 897 (1049)
T 3m1i_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999999998876543 334555666678888888888888888888876431 11 23455
Q ss_pred hhHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSI-LEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d-~~VR~~Aa~a~~~l~ 1993 (2058)
..++..+...+.|.. ...-+.-+..+..+.
T Consensus 898 ~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 898 FIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHhhhHHHHHHHHHHHH
Confidence 566777777776654 222333334444443
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.79 E-value=4.1e-15 Score=197.52 Aligned_cols=513 Identities=11% Similarity=0.080 Sum_probs=356.6
Q ss_pred HHHHHHHHHhhHhhHhhcc-----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHH
Q 000143 1314 EAVQRAVSSCLSPLMQSMQ-----DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLRE 1385 (2058)
Q Consensus 1314 ~~V~~av~~~L~~l~~~~~-----~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~ 1385 (2058)
+++|..++-|+..+...+. +.+.+.+...+.......+......|+.++..+..+.. ...+.....++.+..
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 4678888999998887764 44566677777766666777888889999999887542 222223478889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh---------hhh
Q 000143 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQG 1455 (2058)
Q Consensus 1386 ~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~---------~~~ 1455 (2058)
.+.++ +..+++.|+.+++.++... ....++. .-+|.|...+..+++.+|.-|..+|..+..... ...
T Consensus 298 Ll~s~-~~~~q~~A~~al~~aa~~~--~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~ 374 (810)
T 3now_A 298 MATTD-DELQQRVACECLIAASSKK--DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374 (810)
T ss_dssp HHHSS-CHHHHHHHHHHHHHHTTSH--HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTH
T ss_pred HhCCC-CHHHHHHHHHHHHHHcCCc--HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhcc
Confidence 88887 8889999999998876542 2233322 224888888988889999999999999874322 123
Q ss_pred HHhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1456 VKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~--~~~~R~~a~~~Lg~la~~~p~~l~~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+..+++.+.+.|.++ +..+|..|+++|..++........-. -...+|.|+.++...++.++..|.++|+.++.....
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 577889999999877 88999999999999986543221111 147899999999988999999999999999874321
Q ss_pred h----hHHhHHHHHHhccCCCC-----hhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000143 1533 P----EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2058)
Q Consensus 1533 ~----~i~~lvp~Ll~~l~d~~-----~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L 1603 (2058)
+ .+..+-...-....++. +.+++-+..+.. +-.+|.|...+...++.+|..|+.+++++
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve------------aGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN------------EGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH------------TTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH------------CcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 11111000000000001 111111122211 23689999999999999999999999999
Q ss_pred HhhhCCCCchhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-Cc-----cchHHHHHhhcccCCChHHH
Q 000143 1604 CSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF-----PDLVSWLLDALKSDNSNVER 1675 (2058)
Q Consensus 1604 ~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~-----~~llp~L~~~L~~d~~~~~R 1675 (2058)
+. ++. ....+ ...+|.|..++.+..+.+|..|+.||+.++....++ .+ .+.+|.|++.|.++.....+
T Consensus 523 A~---d~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 523 CG---LKE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp HT---SHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred cC---CHH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 85 222 22222 357899999999999999999999999998654333 12 24789999999866555455
Q ss_pred hhHHHHHHHHHHHhch---hHH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCC
Q 000143 1676 SGAAQGLSEVLAALGT---VYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE 1749 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~---~~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~ 1749 (2058)
..++.+|+.++..-.. ... ...+|.+...+.+.++.+|..++.++++++..-. ....+. ...+|.++..+..+
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC
Confidence 6788888887753211 111 3568888888889999999999999999986322 223344 25899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhc---ccchh--chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCc
Q 000143 1750 NESVRDAALGAGHVLVEHYA---TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA 1824 (2058)
Q Consensus 1750 ~~~VR~~a~~al~~lv~~~~---~~~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~ 1824 (2058)
+..+|..|+.++..+..... ...++ ..+|.|.+++.+.+..+|..++..+..+... +
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-------------s----- 739 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-------------G----- 739 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-------------C-----
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-------------C-----
Confidence 99999999999998876322 11232 4789999999999999999999999998521 0
Q ss_pred chHHHHHHHHHHhChhhHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHh
Q 000143 1825 STEAHGRAIIEVLGRDKRNEVLAALYMVRSD---VSLSVRQAALHVWKTIVA 1873 (2058)
Q Consensus 1825 ~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D---~~~~VR~aA~~~l~~lv~ 1873 (2058)
. .....+.+ ...++.|.....+ .+..+++.|.+.+..+..
T Consensus 740 -~-e~~~~l~e-------~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 740 -E-EIAKKLFE-------TDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp -H-HHHHHHHT-------STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred -H-HHHHHHHH-------CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 0 11111111 1244555555432 367889999988887764
No 20
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.79 E-value=6.3e-15 Score=208.97 Aligned_cols=743 Identities=11% Similarity=0.043 Sum_probs=403.6
Q ss_pred chhhHHHHHHHHHhhhh----hCCCChHHHHHHHHH---hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHh
Q 000143 1191 WLGRQGIALALHSAADV----LRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYL 1263 (2058)
Q Consensus 1191 ~~~R~~~~~al~~l~~~----~~~~~~~~l~~~Li~---~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L 1263 (2058)
.++|..++..|++.... ++.++...+-..++. ..-+ ....||..+..+...++....+ .|+++++.+...+
T Consensus 54 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~ 131 (971)
T 2x1g_F 54 QEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTF 131 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHH
Confidence 35666666666665432 233333333333332 1112 2478999999988888877655 8888888877766
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHH
Q 000143 1264 NKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343 (2058)
Q Consensus 1264 ~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll 1343 (2058)
.....+.-.+...++.++..|..+++.+...++. .....++.... ..++..++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~-------------~~r~~~~~~l~-----------~~~~~vl~ll~ 187 (971)
T 2x1g_F 132 QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTS-------------VKRVVLRAEIA-----------KRVQLVIHTVE 187 (971)
T ss_dssp HHTC----CHHHHHHHHHHHHHHHHHHHHHCCCS-------------SCHHHHHHHHH-----------TTHHHHHHHHH
T ss_pred hccccccCCCHHHHHHHHHHHHHhHHHHhccCcH-------------HHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4311110001246788899999888532211100 00001111011 11222222222
Q ss_pred HHHhcCC-------CHHHHHHHHHHHHHHHh--hhCccccchhchHHHHHHHHh---------------CCCCHHHHHHH
Q 000143 1344 DQLMKSD-------KYGERRGAAFGLAGVVK--GFGISSLKKYGIAATLREGLA---------------DRNSAKRREGA 1399 (2058)
Q Consensus 1344 ~~L~~~~-------~~~vR~~Aa~~L~~l~~--~~g~~~l~~~~il~~L~~~l~---------------~~~~~~~R~~a 1399 (2058)
+.+.... .+.++..+..|+...+. ..+.. ....+++.+.. +. ...++..|+.|
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 2221111 13688899999988877 34333 23467777666 41 11256789999
Q ss_pred HHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCCh---HHH
Q 000143 1400 LLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW---RTK 1475 (2058)
Q Consensus 1400 l~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~---~~R 1475 (2058)
+.++..+..... ..+.+++..++|.++... +.+...+.+.+. ...
T Consensus 265 ~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~-------------------------------~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPKTAFVLIKMFLDSL-------------------------------SEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHHHHHHHHCSGGGGCHHHHHHHHHHHHHHH-------------------------------HHHHHHHSSSSCSCSHHH
T ss_pred HHHHHHHHcCccccccHHHHHHHHHHHHHhH-------------------------------HHHHHHHhcccccchHHH
Confidence 999988876422 223344555555444211 000001111110 112
Q ss_pred HHHHHHHHHHHhhChhh-----------HhhhhhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhhc-C-------
Q 000143 1476 QSSVQLLGAMAYCAPQQ-----------LSQCLPKIVPKLTEVLTD-----THPKVQSAGQTALQQVGSVI-K------- 1531 (2058)
Q Consensus 1476 ~~a~~~Lg~la~~~p~~-----------l~~~L~~Iip~L~~~L~D-----~~~~VR~aA~~aL~~l~~~~-~------- 1531 (2058)
...++.+..++...+.. ..+++..+++.++.+... .+..|+..+++.+..+++.. .
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 393 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQK 393 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccch
Confidence 22233333333222221 224566777777776533 46789999999988887622 1
Q ss_pred -------chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1532 -------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1532 -------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
.+.+..+++.++..+.-|++.. +.. .+... .+.....|+.+.+++..++
T Consensus 394 ~~~~~~~~~~~~~ll~~l~~~~~~p~~~~-----------~~~-~d~~e------------~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 394 HKCWEYIKPLYAHLTRILVRKSEQPDEKS-----------LAK-WSSDD------------LECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-----------TSC-SCHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccc-----------ccc-cCHhH------------HHHHHHHHHHHHHHHHHHH
Confidence 1233444555544443222100 000 00000 0001246777888888887
Q ss_pred hhhCCCCchhhhHhhhhHHHHHhhCC-----CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcc-cCCChHHH
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK-SDNSNVER 1675 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~l~d-----~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~-~d~~~~~R 1675 (2058)
..++ + ..++.+++.+...+.. ++|..|+++..++|++++.+.+. +++.+++ ++..+. +|....+|
T Consensus 450 ~~~~--~---~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr 523 (971)
T 2x1g_F 450 DVLN--D---YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLL 523 (971)
T ss_dssp TTCT--T---HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHH
T ss_pred HHHh--H---HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHH
Confidence 7543 2 2344455555555443 78999999999999999877653 3455666 333344 24567799
Q ss_pred hhHHHHHHHHHHHhch--hHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC--CCH
Q 000143 1676 SGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENE 1751 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~--~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d--~~~ 1751 (2058)
..++++++.+...++. +++..+++.++..+ + +.|+..++.++..+++..+..+.||++.++..+...+.. -..
T Consensus 524 ~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 524 GTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN 600 (971)
T ss_dssp HHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCCh
Confidence 9999999999988874 47888999999888 4 789999999999999999999999999999999999887 357
Q ss_pred HHHHHHHHHHHHHHHHhccc----chhchHHhHh----hhcCCC--CHHHHHHHHHHHHHH---HHHhhCCcccccccCC
Q 000143 1752 SVRDAALGAGHVLVEHYATT----SLPLLLPAVE----DGIFND--NWRIRQSSVELLGDL---LFKVAGTSGKALLEGG 1818 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~----~l~~llp~L~----~~l~d~--~~~vR~sav~ll~~L---l~~~~g~~~k~~~~~~ 1818 (2058)
..+..+++++..++...+.. .+..+++.+. ..+... +..-+...+..++.+ +..+.+... .
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~------~ 674 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVD------E 674 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcC------c
Confidence 88999999999988765422 2223333333 333322 232333333444333 222111000 0
Q ss_pred CCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC
Q 000143 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1896 (2058)
Q Consensus 1819 ~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~--~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~ 1896 (2058)
...+.+..+. -....+.+++.+.... ...+..+.+.+..+|+.++...+..+.+++|.+++.++..+..
T Consensus 675 ~~~~~~~~~~---------~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 675 QATDQPIVQP---------VLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT 745 (971)
T ss_dssp ---------C---------CHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-
T ss_pred ccccccCCCc---------hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc
Confidence 0000000000 0011222333222221 2235678888899999988877878888999999999888776
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcc-----hhhch----HHHHhhhcCC-------CChhHHHHHHHHHHHHHHhhChhhh-
Q 000143 1897 SSSERRQVAGRALGELVRKLGER-----VLPSI----IPILSRGLKD-------PSASRRQGVCIGLSEVMASAGKSQL- 1959 (2058)
Q Consensus 1897 ~~~~~R~~A~~~Lg~L~~~lg~~-----~l~~l----lp~L~~~l~d-------~~~~vR~~a~~aL~eii~~~~~~~l- 1959 (2058)
... ..+...++.++..+|.+ .+.++ ...+...++. .+++++......++.++......-+
T Consensus 746 ~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~ 822 (971)
T 2x1g_F 746 RCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED 822 (971)
T ss_dssp -CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC
T ss_pred CCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC
Confidence 433 45788999999988863 12222 2222233332 3678888887778888876643222
Q ss_pred HhH-HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-hhhHHH----HHH----HHHHhcCC---CcchHHHHHHHH
Q 000143 1960 LSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-MQAIDE----IVP----TLLHALED---DQTSDTALDGLK 2026 (2058)
Q Consensus 1960 ~~~-~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g-~~~~~~----ilp----~Ll~~L~~---~~~~~~al~aL~ 2026 (2058)
.+. ++.+++.....+.-+++.+..++...+..+....+ ...+.+ ..+ .++..+.+ ...-+++...|+
T Consensus 823 s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~ 902 (971)
T 2x1g_F 823 KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILL 902 (971)
T ss_dssp TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHH
Confidence 145 67788888877776777777778777777665532 122222 222 33332221 122244555666
Q ss_pred HHHhhcCCccchhhhhhh
Q 000143 2027 QILSVRTTAVLPHILPKL 2044 (2058)
Q Consensus 2027 ~i~~~~~~~~lp~lip~L 2044 (2058)
.+...++....+++-..|
T Consensus 903 ~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 903 AMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHh
Confidence 666666655555544333
No 21
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.77 E-value=2e-13 Score=193.73 Aligned_cols=766 Identities=12% Similarity=0.046 Sum_probs=443.5
Q ss_pred HhHHHH-hcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----
Q 000143 1133 SGLFKA-LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2058)
Q Consensus 1133 ~~ll~~-l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~---- 1207 (2058)
..++.. ..++++..|+.|.+.|.. .+..|+.|.-.+.-|. . +.+..+|..++..|++....
T Consensus 27 ~~~l~~l~~~~~~~~r~~A~~~L~~-~~~~p~~~~~~~~lL~--------~-----~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 27 EKALHQLYYDPNIENKNLAQKWLMQ-AQVSPQAWHFSWQLLQ--------P-----DKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHH-HHHSTTHHHHHHHHTS--------T-----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-HhcCHHHHHHHHHHhc--------C-----CCchHHHHHHHHHHHHHHHhCHHh
Confidence 444554 445788999998888866 4556776664333221 0 23457899999999987643
Q ss_pred hCCCChHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 000143 1208 LRTKDLPVIMTFLISRAL--ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTG 1285 (2058)
Q Consensus 1208 ~~~~~~~~l~~~Li~~~L--~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg 1285 (2058)
++.++...+-..++.... .+....||..+..+...++....++.|+++++.+...+.. ..+...+...++.++.+|.
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~-~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA-EDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh-hccCCCcHHHHHHHHHHHH
Confidence 344444444444442111 1235889999999888888776667799999988877653 1110001245788899999
Q ss_pred HHHhHhccC--------------CcchHHHHHHHHhhhCCCC--HHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHH
Q 000143 1286 ALAKHLAKD--------------DPKVHAVVDKLLDVLNTPS--EAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2058)
Q Consensus 1286 ~La~~l~~~--------------~p~i~~iv~~Ll~~L~~~~--~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L 1346 (2058)
.+++.+... ...++.+++.+...+.+.+ ..+...+.+|+...+. .+... ..+++.+++.+
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 998643111 1235666666666665543 2477778888877765 33222 66777777665
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccch--hchHHHHHH-------HHhCCCCHHHHHHHHHHHHHHHHHhcccc---
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLRE-------GLADRNSAKRREGALLAFECLCEKLGRLF--- 1414 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~--~~il~~L~~-------~l~~~~~~~~R~~al~al~~L~~~lg~~~--- 1414 (2058)
. ++..|..|..++..++.......... ..+++.+.. .+.+. |..........+..+++.....+
T Consensus 251 ~---~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 251 Q---DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG-DMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp T---STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C---CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 2 46789999999999987543221110 022222221 22333 33333444455555554322222
Q ss_pred ---hhhHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1415 ---EPYVIQMLPLLLVAFSD-----QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1415 ---~p~l~~llp~Ll~~l~D-----~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
.+++..++..++....+ .++.++..+..-+..++..... + ....+.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~-------------~---~~~~~~---------- 380 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILS-------------F---EAEKQA---------- 380 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTT-------------S---CHHHHH----------
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHh-------------h---hhhhhH----------
Confidence 24555666666666553 3445555555544444331100 0 000000
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCH---------------HHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHP---------------KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~---------------~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
.....+.++++.+++.++..+..+.. ..|.++..+|..++...++
T Consensus 381 -~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~------------------- 440 (963)
T 2x19_B 381 -VYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA------------------- 440 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH-------------------
Confidence 00112234444555555444432211 1233333333333322221
Q ss_pred hHHHHHHHHHhccccccCChhhHhhHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh
Q 000143 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL----RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2058)
Q Consensus 1552 ~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L----~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~ 1627 (2058)
..+..+++.+...+ .+.+|..+..++.++|.+++.+.+ +..++++.+++.+..
T Consensus 441 --------------------~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--~~~~~l~~l~~~l~~- 497 (963)
T 2x19_B 441 --------------------ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--NYSDVVPGLIGLIPR- 497 (963)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--SCCSHHHHHHHHGGG-
T ss_pred --------------------HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--hhhHHHHHHHHHHHh-
Confidence 12233344444444 456799999999999999886433 335677777775443
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhhcc--cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHH
Q 000143 1628 LVDPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDII 1702 (2058)
Q Consensus 1628 l~d~~~~vR~~a~~aLg~l~~~lg~--~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll 1702 (2058)
+.++++.+|..++.++|.+++-++. ++++.+++.++..|.+ ..++..++.++..++..++.. +++.++..+.
T Consensus 498 l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 498 ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3446889999999999999987664 4788999999999863 568899999999999888764 6677777777
Q ss_pred Hhhcc--CChhHHHHHHHHHHHhHHHhc-hhHHHhHHHHHHHHHHhcc-----CCCHHHHHH---HHHHHHHHHHHhccc
Q 000143 1703 RNCSH--QRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLA-----DENESVRDA---ALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1703 ~~l~~--~~~~vR~~al~~l~~la~~~g-~~f~pyl~~ilp~Ll~~L~-----d~~~~VR~~---a~~al~~lv~~~~~~ 1771 (2058)
..+.+ .+...|..++.+++.++...+ ..+.+|+..+++++...+. ..+++.+.. .++++..++..++..
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~ 654 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDIS 654 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77665 367899999999999998887 7899999999999987663 123333332 223333333222211
Q ss_pred chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH-
Q 000143 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY- 1850 (2058)
Q Consensus 1772 ~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~- 1850 (2058)
. +. ...+.. ... ...++... +.. . ...+.+++.+.
T Consensus 655 ~-----~~---~~~~~~------------~~~-------------~~~~~~~~--~~~----~-----~~~~~~~~~~~~ 690 (963)
T 2x19_B 655 H-----HE---DDHEGP------------ELR-------------KLPVPQGP--NPV----V-----VVLQQVFQLIQK 690 (963)
T ss_dssp C-----CC-------------------------------------------CC--CHH----H-----HHHHHHHHHHHH
T ss_pred c-----cc---cccccc------------ccc-------------cCCCCCCC--Cch----H-----HHHHHHHHHHHH
Confidence 0 00 000000 000 00000000 000 0 01112222221
Q ss_pred --HhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-----hhhc
Q 000143 1851 --MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-----VLPS 1923 (2058)
Q Consensus 1851 --~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-----~l~~ 1923 (2058)
.... .+..+.+.+..+++.++...+..+.+++|.+++.+........ -......++.++...|.. .++.
T Consensus 691 ~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 691 VLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred HHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 1112 2357788888899998888888888889988888776554321 123556677777744322 2222
Q ss_pred hHHH----HhhhcC---CCChhHHHHHHHHHHHHHHhhChhhh-HhH-HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1924 IIPI----LSRGLK---DPSASRRQGVCIGLSEVMASAGKSQL-LSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1924 llp~----L~~~l~---d~~~~vR~~a~~aL~eii~~~~~~~l-~~~-~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
++.. +...++ ++.+++|......++.++..+....+ .+. +..+++.+...+...++++..++...+..+..
T Consensus 767 ~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 767 LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3222 222222 24689999999889999887754433 233 67888888889999999999999999999886
Q ss_pred HhC-h--------hhHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhhcCCccch
Q 000143 1995 SAG-M--------QAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLP 2038 (2058)
Q Consensus 1995 ~~g-~--------~~~~~ilp~Ll~~L~~~~---~~~~al~aL~~i~~~~~~~~lp 2038 (2058)
..+ . .+...++..++..+.+.. .-+.....|..++..++.....
T Consensus 847 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 902 (963)
T 2x19_B 847 RCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSM 902 (963)
T ss_dssp GTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHH
Confidence 654 1 234456666666666422 2234444455565555443333
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=1.1e-15 Score=203.23 Aligned_cols=473 Identities=13% Similarity=0.145 Sum_probs=331.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
..+.+.+.+.++ +...|+.+..++..+++... .....+++.+.+.++|+++.+|..|..+++.+. .++..+.
T Consensus 50 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~ 121 (591)
T 2vgl_B 50 LFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEY 121 (591)
T ss_dssp GHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHH
Confidence 445555666665 78888888887877766422 223345677778899999999999887776653 4455678
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----h
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----E 1534 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~ 1534 (2058)
++|.+.+.+.|+++.+|+.|+.+++.+....|+.+.. ..++|.+.++++|+++.|+.+|+.+|+.++..-.+. .
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 8899999999999999999999999999877765433 368899999999999999999999999998754322 1
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-CCCCc
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKD 1612 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l-~~~~~ 1612 (2058)
....++.++..+.+.++..+ ..++.+.. +. ..+.+....+++.+...+++.++.++..|+.++..+...+ .+++.
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 23455666666666665554 45555543 22 2233445678888888899999999999999999876533 23334
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
+....+.+.+.|..++ ++++++|..+.++++.++...+ +.+...+..++ .+.+|+ ..+|..++..+..++ ..+
T Consensus 277 ~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~ 349 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQA 349 (591)
T ss_dssp HHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSS
T ss_pred HHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---Chh
Confidence 4445566777777655 5889999999999999987643 32322222221 222344 668888887776654 233
Q ss_pred HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS 1772 (2058)
Q Consensus 1693 ~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~ 1772 (2058)
..+.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+....++..+..+++.++..+...
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~- 424 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK- 424 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-
Confidence 467889999999999999999999999999887654 345667788888899999999999999999988776542
Q ss_pred hhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHH
Q 000143 1773 LPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2058)
Q Consensus 1773 l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~ 1851 (2058)
...+++.|.+.+.+ ....+|.+++.++|+.... ..+ ...++..++.
T Consensus 425 ~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~------------~~~---------------------~~~~l~~l~~ 471 (591)
T 2vgl_B 425 YESIIATLCENLDSLDEPDARAAMIWIVGEYAER------------IDN---------------------ADELLESFLE 471 (591)
T ss_dssp CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT------------CTT---------------------HHHHHHHHST
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc------------ccC---------------------HHHHHHHHHH
Confidence 23466777777753 5678899998888875210 000 1134445555
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGEL 1912 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~-~~~~~~R~~A~~~Lg~L 1912 (2058)
...+.+..||..++..+..+....|....+.+..++.. +.. +.+.++|.-|.+.++-+
T Consensus 472 ~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~---~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 472 GFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSL---ATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHH---HHTTCCCHHHHHHHHHHHTTT
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---hhhcCCChHHHHHHHHHHHHH
Confidence 55677789999998888888776664433333333332 234 47889999888776544
No 23
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.77 E-value=1.8e-14 Score=191.45 Aligned_cols=658 Identities=12% Similarity=0.104 Sum_probs=432.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHh-hhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1337 TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVK-GFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~-~~~~~vR~~Aa~~L~~l~~-~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~ 1414 (2058)
.-+..+++.+++ +.+-+.|+.|+.-|-.+++ .-|.+.+-+.+-+..+.+.+++.+++...-+|+.++..+|++-....
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 346667776664 3456678888887777765 33444444446677788888876789999999999998887643222
Q ss_pred hhhHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh------------------hhHHhHHHHHHHhccCC--ChH
Q 000143 1415 EPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDK--AWR 1473 (2058)
Q Consensus 1415 ~p~l~~-llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~------------------~~v~~llp~Ll~~L~~~--~~~ 1473 (2058)
...+.. =+|.+...+.-+++.+-.++..++..+...+++ ..++.++..++..+.+. .-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 86 KGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChh
Confidence 222211 135566667777888888898999888877653 12366777788888775 467
Q ss_pred HHHHHHHHHHHHHhhC----hhhHhhhhhhHHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHhhcCc----hh
Q 000143 1474 TKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---DT--------HPKVQSAGQTALQQVGSVIKN----PE 1534 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~----p~~l~~~L~~Iip~L~~~L~---D~--------~~~VR~aA~~aL~~l~~~~~~----~~ 1534 (2058)
.|-.++++|..-.... +..+.. ..=+..++++.. +. .+.+|..|.-++.++-+.+.. ..
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 8888888887665322 111111 111223333322 21 478999999999999998872 22
Q ss_pred HHhHHHH-HHhccCCCC--hhHH--HHHHHHHhccccccCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1535 IASLVPT-LLMGLTDPN--DHTK--YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1535 i~~lvp~-Ll~~l~d~~--~~vr--~al~~L~~~~f~~~~~~~--~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+.+.+.. +...+..++ ..++ .++.++....+- .... .....+|.+...+..++..++..|+.++++++.-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~--~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD--VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHH--HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHH--HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 3333333 333343343 2344 244444321110 0000 0124678888888888999999999999997752
Q ss_pred CCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----C-----ccchHHHHHhhcccCC-ChHHHh
Q 000143 1608 TEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N-----FPDLVSWLLDALKSDN-SNVERS 1676 (2058)
Q Consensus 1608 ~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~-----~~~llp~L~~~L~~d~-~~~~R~ 1676 (2058)
...+.++ ..-+|.|..++.+.+..+|..|+.+|..+....+.+ . ..++++.+...|.++. +.++|.
T Consensus 321 ---~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~ 397 (810)
T 3now_A 321 ---KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR 397 (810)
T ss_dssp ---HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHH
T ss_pred ---cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHH
Confidence 2223322 112388999998888999999888888887543311 2 2456888888887652 556899
Q ss_pred hHHHHHHHHHHHhchh-H-H--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch-----------------------
Q 000143 1677 GAAQGLSEVLAALGTV-Y-F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV----------------------- 1729 (2058)
Q Consensus 1677 ~aa~~L~~i~~~~g~~-~-l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~----------------------- 1729 (2058)
.++++|+.+...-... . . ..++|.++..+.+.+..+...+++++++++.....
T Consensus 398 ~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 398 WAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 9999998875432111 1 1 46899999999989999999999999999874310
Q ss_pred ----hHH----H--hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc--ccchh-chHHhHhhhcCCCCHHHHHHHH
Q 000143 1730 ----QFQ----N--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA--TTSLP-LLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1730 ----~f~----p--yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~--~~~l~-~llp~L~~~l~d~~~~vR~sav 1796 (2058)
++. . .-...+|++...+..+++.+|+.+.+++..+...-. ...++ ..+|.|...+.+.+...|..|.
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa 557 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHH
Confidence 010 0 112478999999999999999999999999863211 11112 2678888888888889999999
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhC
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANT 1875 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~-D~~~~VR~aA~~~l~~lv~~~ 1875 (2058)
..++.+.... ++ +. .++.......++.|...+. |.....+..|+.++..++...
T Consensus 558 ~AL~nL~~~~-------------~p-----~~-------~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 558 QALARIGITI-------------NP-----EV-------SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HHHHHHHHHS-------------CH-----HH-------HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCC-------------Ch-----hh-------hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 9999885320 00 00 0000000123444444433 334444556777777777644
Q ss_pred hhhHHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----hh--hchHHHHhhhcCCCChhHHHHHHHHHH
Q 000143 1876 PKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VL--PSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2058)
Q Consensus 1876 ~~~l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l--~~llp~L~~~l~d~~~~vR~~a~~aL~ 1948 (2058)
+..-..++. ..++.++..+.+++..+|..|+++++.++. +.. +. ...+|.|...+++++..+|..+|++|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 332222222 345666666788899999999999999985 322 22 357889999999889999999999999
Q ss_pred HHHHhhChhhhHhHH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhh---H--HHHHHHHHHhcCCCc-----
Q 000143 1949 EVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---I--DEIVPTLLHALEDDQ----- 2016 (2058)
Q Consensus 1949 eii~~~~~~~l~~~~--~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~---~--~~ilp~Ll~~L~~~~----- 2016 (2058)
.+.... +......+ ...+|.|..++.+++.++|..|+.++..+... +... + ...+|.|.+.|.+++
T Consensus 691 nLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 691 IITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 887642 33333334 36889999999999999999999999999762 3322 2 267899999987542
Q ss_pred chHHHHHHHHHHHhh
Q 000143 2017 TSDTALDGLKQILSV 2031 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~ 2031 (2058)
..+.|+.+|..++..
T Consensus 769 i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 769 AREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 357899999988864
No 24
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.75 E-value=2.8e-13 Score=188.08 Aligned_cols=783 Identities=11% Similarity=0.092 Sum_probs=431.6
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------
Q 000143 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED-------- 1119 (2058)
Q Consensus 1048 ~~~~~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~-------- 1119 (2058)
.++...++...+.+++..+.+|+...|.+|.+.|++.... +....+...+. ..+.++.+|-.|..
T Consensus 7 l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHh
Confidence 3444456667888899999999888999999999876511 12222333333 23446677776654
Q ss_pred HHhhcCCCCCCCH-HhHHHHhc----CC-----CHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCC
Q 000143 1120 IWDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2058)
Q Consensus 1120 ~w~~~~~~~~~~~-~~ll~~l~----~~-----~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 1188 (2058)
.|...+.+....+ ..+++.+. ++ ...+|+..+.+++.++. .||+.|++.+..+.+...
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----------- 148 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----------- 148 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT-----------
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc-----------
Confidence 4665443322334 55665553 22 47788999999999985 578899999999887642
Q ss_pred CCchhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHhhCccchhhHHHHHHHHhcccC
Q 000143 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGR-MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2058)
Q Consensus 1189 ~~~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~-al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~ 1267 (2058)
.+...+...+..+..+.+-+.. .-.+.-..-|+. ..+... .+++.+++.+...+...
T Consensus 149 ~~~~~~~~~L~iL~~L~EEV~~-------------~~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~- 206 (1023)
T 4hat_C 149 SSVNVCENNMIVLKLLSEEVFD-------------FSAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQG- 206 (1023)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-------------SCTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------hhhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCC-
Confidence 1112344444444444332100 000111111221 111111 12556777777777652
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHH-hhhCCCCHHHHHHHHHhhHhhHhh-c-cc--chH----HH
Q 000143 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQS-M-QD--EAP----TL 1338 (2058)
Q Consensus 1268 ~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll-~~L~~~~~~V~~av~~~L~~l~~~-~-~~--~~~----~~ 1338 (2058)
.. . .+...++.+++....-++-..-.-..+++.++ ..|. ++..+.++++|+..++.. . ++ ... .+
T Consensus 207 ~~--~--~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 207 AS--S--SLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp SS--C--HHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred CC--H--HHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 11 1 45667788888766533211000013555666 5554 467888999999988862 2 22 122 22
Q ss_pred HHHHHHHH---------------hc--CCCHHHHHHHHHHHHHHHhhhCcccc--ch-hchHH----HHHHHHhCCCCHH
Q 000143 1339 VSRLLDQL---------------MK--SDKYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2058)
Q Consensus 1339 v~~Ll~~L---------------~~--~~~~~vR~~Aa~~L~~l~~~~g~~~l--~~-~~il~----~L~~~l~~~~~~~ 1394 (2058)
++..++.+ .. +++....++-+..+..+.+....-.. +. .+++. .|......+ ++.
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 23333322 11 12233333334444433332211100 11 12322 333333333 555
Q ss_pred HHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHcCCCC---------------------H-HHHHHHHHHHHH
Q 000143 1395 RREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------V-AVREAAECAARA 1446 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg------~~~~p~l~~llp~Ll~~l~D~~---------------------~-~VR~aA~~al~~ 1446 (2058)
+=..++..+..+.+.+- ..+.|++.++++.++..+.-++ . ..-+...+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 55556666666766442 3478889999999987654321 1 111122366666
Q ss_pred HHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhc-----CCCHHHHHH
Q 000143 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2058)
Q Consensus 1447 l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~-----D~~~~VR~a 1518 (2058)
+....+.+.++.+++.+.+.+.+ .+|+.|.+++.++|+++.+..+ ...++++.++|.|+.++. |+++.||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 65555555567777877777764 6899999999999999988654 477899999999999886 566788999
Q ss_pred HHHHHHHHHhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHH
Q 000143 1519 GQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596 (2058)
Q Consensus 1519 A~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A 1596 (2058)
+++++|++++++.. + +++.+ +..+..++.+.++.+...|
T Consensus 520 ~~~~lGry~~wl~~~~~~L~~v---------------------------------------l~~L~~~l~~~~~~v~~~A 560 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAHWNFLRTV---------------------------------------ILKLFEFMHETHEGVQDMA 560 (1023)
T ss_dssp HHHHHHTCHHHHHHCHHHHHHH---------------------------------------HHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHH---------------------------------------HHHHHHHhhcCCHHHHHHH
Confidence 99999999987641 1 23333 3344445555556677777
Q ss_pred HHHHHHHHhhhC------CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-CccchHHHHHhhcccC
Q 000143 1597 AQIVGNMCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSD 1669 (2058)
Q Consensus 1597 ~~~l~~L~~~l~------~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~~~llp~L~~~L~~d 1669 (2058)
|.++.++|+-.. .+....||++.++..+.....+-.+.-+..+.+|+|.++...+.+ ..++++..|+..+..
T Consensus 561 ~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~- 639 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM- 639 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH-
Confidence 777777776322 123346899999999999888878888899999999999988754 122333333322210
Q ss_pred CChHHHhhHHHHHHHHHHH--hchhHHHHhhHHHHHhhccCC-hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1670 NSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~--~g~~~l~~llp~Ll~~l~~~~-~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
.+..+... -++..+ .+++ ...--..+.++..++...|..|.||+..++|.+++..
T Consensus 640 -----------~~~~l~~~~~~~~~~~-----------~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y 697 (1023)
T 4hat_C 640 -----------AWDTIVEQSTANPTLL-----------LDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1023)
T ss_dssp -----------HHHHHHHHHHHCTTGG-----------GCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCchhh-----------cCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 01111110 011100 0000 0001124567778889999999999999999988754
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1747 ~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
+-.... +...+..-|....+. | ..+.+ ..+|...++++...+.+. ++ .
T Consensus 698 ~~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~------------~~-----~ 745 (1023)
T 4hat_C 698 RAVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKA------------RN-----L 745 (1023)
T ss_dssp HHHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHC------------SC-----H
T ss_pred HHHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcC------------CC-----H
Confidence 322111 111111111111110 1 11111 134555556665554221 00 0
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH----HHhcC---CC
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI----SSLAS---SS 1898 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~----~~L~~---~~ 1898 (2058)
+.. ...+-+...+.++...-....+ ....| +.+...++...+..+.+.+|.+++.+. ..+.+ +.
T Consensus 746 ~~~----~~~~~~~l~~~vl~dY~~~~~~~r~~~v----L~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~ 817 (1023)
T 4hat_C 746 DDV----VKVLVEPLLNAVLEDYMNNVPDARDAEV----LNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1023)
T ss_dssp HHH----HHHTHHHHHHHHHHHHHHSCGGGCCHHH----HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHH----HHHhHHHHHHHHHHHHHhCChhhccHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 111 1111011111112111111111 11222 333444444444444444554444443 33443 57
Q ss_pred HHHHHHHHHHHHHHHHHhCcc-------hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh--------hhhHhHH
Q 000143 1899 SERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--------SQLLSFM 1963 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~-------~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~--------~~l~~~~ 1963 (2058)
++.|..-.+.+..+..++-.. .+..++..+..+++.+..++-..+...+.+++.+... .-+..|.
T Consensus 818 Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~ 897 (1023)
T 4hat_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 899999999888888876543 3345666677788888888888777888888765432 1233566
Q ss_pred hhHHHHHHHHhcCCCH
Q 000143 1964 DELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~ 1979 (2058)
..++.-+...+.|++.
T Consensus 898 ~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 898 FIFVSETFFVLTDSDH 913 (1023)
T ss_dssp HHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhCchh
Confidence 6666666667777653
No 25
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.75 E-value=2.3e-13 Score=189.00 Aligned_cols=621 Identities=12% Similarity=0.119 Sum_probs=360.0
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCC--chHHHHHHHHHHhh----cCCC
Q 000143 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDR----YGYD 1127 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~--~~~~r~~a~~~w~~----~~~~ 1127 (2058)
.+++...++.+.+| |++.|..|.+.|++.... +....+...+ ....+ ++.+|-.|..+.+. .+.+
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~i--L~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEI--FSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHH--HhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35666667666666 688999999988876411 1122222222 22322 67777777665543 1211
Q ss_pred ----CCCCH-HhHHHHhc-----CCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHH
Q 000143 1128 ----FGTDY-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2058)
Q Consensus 1128 ----~~~~~-~~ll~~l~-----~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~ 1196 (2058)
....+ ..+++.+. +....||+..+.+++.++. .||+.|++.+..+.+..... +....-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 11223 55666554 2467899999999999985 47888888888887765421 00011112
Q ss_pred HHHHHHHhhhhhCC----------------------CChHHHHHHH---HHhhccCCCHHHHHHHHHHHHHHHHhhCccc
Q 000143 1197 IALALHSAADVLRT----------------------KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKHGRDN 1251 (2058)
Q Consensus 1197 ~~~al~~l~~~~~~----------------------~~~~~l~~~L---i~~~L~d~~~~VR~~al~a~~~~i~~~g~~~ 1251 (2058)
....+..+.+-+.. ++.+.+++.. +..+....++.++..+++|....+.--+...
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~ 228 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL 228 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh
Confidence 22233322222111 0111122222 1234444678888888888877776333222
Q ss_pred h--hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHH-----HHhhhC--CCCHHHHHHHHH
Q 000143 1252 V--SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDK-----LLDVLN--TPSEAVQRAVSS 1322 (2058)
Q Consensus 1252 ~--~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~-----Ll~~L~--~~~~~V~~av~~ 1322 (2058)
+ ..+++.+...+.. +.+|.+|+++|..+...-.+.+.++ .++.. .+..+. +.+.++.+..++
T Consensus 229 i~~~~ll~~l~~~L~~--------~~~r~~A~ecL~ei~~k~~~~~~k~-~li~~l~L~~~~~~l~~~~~D~d~~~~la~ 299 (980)
T 3ibv_A 229 IVNEPCMNLLYSFLQI--------EELRCAACETMTEIVNKKMKPLEKL-NLLNILNLNLFFSKSQEQSTDPNFDEHVAK 299 (980)
T ss_dssp HHCHHHHHHHHHHTTS--------HHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHHHHHHHHCC-----CCHHHHHHHHH
T ss_pred hhcchHHHHHHHHcCC--------hHHHHHHHHHHHHHHHcCCChhhHH-HHHHHHhHHHHHHHHhcccccHHHHHHHHH
Confidence 1 4677777777654 2689999999999986321111111 11211 112222 233333332222
Q ss_pred hhHhhHhhcccchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHH
Q 000143 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGA 1399 (2058)
Q Consensus 1323 ~L~~l~~~~~~~~~~~v~~Ll~~L~~~~---~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~a 1399 (2058)
.+..+. + .++.. .... +...+..+...+ ..+++.+.....++ +..+-..+
T Consensus 300 L~~~~g----e---~l~~~-----~~~~~~~~~~~~~~~~~~l--------------~~ll~~lL~~~~~~-~deVs~~t 352 (980)
T 3ibv_A 300 LINAQG----V---ELVAI-----KSDPSELSPELKENCSFQL--------------YNLFPYLIRYLSDD-YDETSTAV 352 (980)
T ss_dssp HHHHHH----H---HHHHH-----HTSCC--CHHHHHHHHHHH--------------HHTHHHHHHHHTCS-SHHHHHTT
T ss_pred HHHHHH----H---HHHHH-----ccCccccchhhhhhHHHHH--------------HHHHHHHHHHhCCC-chhHHHHH
Confidence 221111 1 11111 1111 111111111111 14566666666665 44444444
Q ss_pred HHHHHHHHHH---------hcccchhhHHHHHHHHHHHcCC-------C----C-----HHHHHHHHHHHHHHHHhhhhh
Q 000143 1400 LLAFECLCEK---------LGRLFEPYVIQMLPLLLVAFSD-------Q----V-----VAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1400 l~al~~L~~~---------lg~~~~p~l~~llp~Ll~~l~D-------~----~-----~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
+..+..+.+. +...+.|++.++++.++..+.- + + ...|.... .+..+...++++
T Consensus 353 ~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~ 431 (980)
T 3ibv_A 353 FPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSS 431 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChH
Confidence 4444433332 1234567888888888876531 1 1 13565555 444444445544
Q ss_pred hH-H----hHHHHHHHhcc---CCChHHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHHHHHhc-----CCCHHH
Q 000143 1455 GV-K----LVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKV 1515 (2058)
Q Consensus 1455 ~v-~----~llp~Ll~~L~---~~~~~~R~~a~~~Lg~la~~~p~~l------~~~L~~Iip~L~~~L~-----D~~~~V 1515 (2058)
.+ . .+.+.+.+.+. +.+|+.+.+++.+++.++++++... ..++|.+++.+..+++ ++||.|
T Consensus 432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V 511 (980)
T 3ibv_A 432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV 511 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence 43 3 34444445553 4579999999999999999876532 2567888888888766 899999
Q ss_pred HHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHH
Q 000143 1516 QSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593 (2058)
Q Consensus 1516 R~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr 1593 (2058)
|..++++++++++++.. .++..+++.++. + +++.+++..++
T Consensus 512 ~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~----~---------------------------------~gl~~~~~~V~ 554 (980)
T 3ibv_A 512 QLLYMEILVRYASFFDYESAAIPALIEYFVG----P---------------------------------RGIHNTNERVR 554 (980)
T ss_dssp HHHHHHHHHHTGGGGGTCCTTHHHHHHHHTS----T---------------------------------TTTTCCCTTTH
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHhc----c---------------------------------ccccCCChhHH
Confidence 99999999999998752 233333333333 0 04455556777
Q ss_pred HHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC---C------------------CHHHHHHHHHHHHHHHHhhcc
Q 000143 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1594 ~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d---~------------------~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
..|+.++.++|+.. ...+.||++.++..+..++.- + ..+-+-...+|+|.++...+.
T Consensus 555 ~~a~~af~~f~~~~--~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 555 PRAWYLFYRFVKSI--KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp HHHHHHHHHHHHHT--TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHh--hHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 88888888888853 245678888888887776652 1 122356689999999987652
Q ss_pred ---c---CccchHHHHHhhcc----cCCCh-HHHh---hHHHHHHHHHHHhch---------hHHHHhhHHHHHhhc--c
Q 000143 1653 ---E---NFPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--H 1707 (2058)
Q Consensus 1653 ---~---~~~~llp~L~~~L~----~d~~~-~~R~---~aa~~L~~i~~~~g~---------~~l~~llp~Ll~~l~--~ 1707 (2058)
+ ++..+++.+++.+. ..... ..+. ....+++.+++++.. ..+.++++.++..+. .
T Consensus 633 ~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~ 712 (980)
T 3ibv_A 633 TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG 712 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 1 56667777665553 11111 1111 344566777777632 245677777777666 3
Q ss_pred CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1708 ~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
.+..+|+++..+|..+..++|.++.||++.++..++..+.-.+ -...+..++.++..|+.+
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---LVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---HHHHHHHHHHHHHHTTTT
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999996554322 234567778888888876
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.75 E-value=1.6e-15 Score=201.76 Aligned_cols=503 Identities=16% Similarity=0.160 Sum_probs=348.0
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv 1302 (2058)
+.+.+++...|..++.-...... .|.+. ..+++.+.+.+.++ +. .+|..+...+..+++.-+ ....-++
T Consensus 20 ~~L~~~~~~~k~~~~~kli~~~~-~G~d~-~~~~~~vi~l~~s~----~~--~~Krl~yl~l~~~~~~~~---e~~~l~~ 88 (591)
T 2vgl_B 20 AELNNEKKEKRKEAVKKVIAAMT-VGKDV-SSLFPDVVNCMQTD----NL--ELKKLVYLYLMNYAKSQP---DMAIMAV 88 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHH-TTCCC-GGGHHHHHHTTSSS----CH--HHHHHHHHHHHHHHHHSH---HHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH-CCCCh-HHHHHHHHHHhCCC----CH--HHHHHHHHHHHHHcccCc---hHHHHHH
Confidence 45677777777666544443332 34433 33444444454431 12 578888888877765311 1123346
Q ss_pred HHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHH
Q 000143 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2058)
Q Consensus 1303 ~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~ 1381 (2058)
+.+.+.|.++++.+|..+..+++.+. .++ .+.+++.+... ..+.++.+|+.|+.++..+... +++.++...+++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~-L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKC-LKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 77888899999999988877777654 223 34445555544 4567899999999999999884 455554346889
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
.+.+.+.|+ ++.+|.+|+.+++.++..-+.. +-+.....++.++..+.|.++..+....+++..+... ++.....++
T Consensus 164 ~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l 241 (591)
T 2vgl_B 164 SLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSIC 241 (591)
T ss_dssp HHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHH
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 999999876 8999999999999987754322 2233445666677777778888887776666544311 123347788
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhh---ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~---~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
+.+...+.+.++.++.+|+.+++.+... .++.+......+.+.+..++ ++++.||..|+.+++.++...++ .+..
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH
Confidence 9999999999999999999999998753 23445555566777777655 47899999999999999875432 1222
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+..++....|| ..+| .+++.+.... . ......+++.+...+++.++++|..++..++.++.. +.+.
T Consensus 320 ~~~~~~~~~~d~-~~Ir~~al~~L~~l~--~---~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~------~~~~ 387 (591)
T 2vgl_B 320 EIKVFFVKYNDP-IYVKLEKLDIMIRLA--S---QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK------VEQS 387 (591)
T ss_dssp CTTTTSCCTTSC-HHHHHHHHHHHHHTC--C---SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT------CHHH
T ss_pred HHHhheeccCCh-HHHHHHHHHHHHHHC--C---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------ChhH
Confidence 222233334555 6776 7888876521 1 223556888888888999999999999999998863 2344
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
....++.+..++.+....++..+..+++.+....++ ....+++.|.+.+.+...+..|..+++.+|+++..... ..+
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~ 464 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADE 464 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHH
Confidence 566788888999999999999999999998876543 34678888888888777777899999999987654422 345
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc-cC-CCHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-AD-ENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L-~d-~~~~VR~~a~~al~~l 1764 (2058)
++..+++.+.+.++.+|..++.++..+....+... ...+..+++.. .| .+.+||+.|...++.+
T Consensus 465 ~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 465 LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 66666767777789999999999988877655432 23344444443 45 6789999987766544
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=5.3e-15 Score=190.88 Aligned_cols=344 Identities=13% Similarity=0.071 Sum_probs=256.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhhHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhh-
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~~~p~l~--~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~- 1454 (2058)
++.+.+.+.++ ++.+|..|+.++..+... ........+. .++|.++..+.++ ++.+|..|.+++..++...+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56677777766 889999999999887652 2223344444 5899999999988 8999999999999987633221
Q ss_pred -h-H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 000143 1455 -G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1455 -~-v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2058)
. + ...+|.+.+.+.++++.+|..|+.+|+.++...+..-...+ ..++|.+...+.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 2 46899999999999999999999999999987654322111 3688999999985 7899999999999999965
Q ss_pred c-C---chhHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1530 I-K---NPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1530 ~-~---~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~--~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
. . ...+..++|.++..+.+++..++ .++.++........ ...-....++|.+...+.+.++.+|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 1 12347889999999998888776 45555554211100 0000113468888899999999999999999999
Q ss_pred HHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---Cc-cchHHHHHhhcccCCChHHHhh
Q 000143 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~-~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++.. .+....... ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.+++.+.+ .+..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-AEFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 211111122 258899999999999999999999999998532211 11 3688999888884 45679999
Q ss_pred HHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh
Q 000143 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~ 1727 (2058)
++++|+.++....++.. ..++|.++..+.+.++.+|..++.++..+....
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876433322 358899999999999999999999999988743
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.70 E-value=2.1e-14 Score=196.65 Aligned_cols=506 Identities=12% Similarity=0.068 Sum_probs=328.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh-HhhhhhhH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-l~~~L~~I 1500 (2058)
+|.++..+.++++.+|.++...+...-. .......+|.+...+.+.+..+|..|+.+|+.++...+.. .....+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5667778888889999988887764421 1112567888989888999999999999999998753322 11123478
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000143 1501 VPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2058)
Q Consensus 1501 ip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp 1579 (2058)
++.|+..|.+ .++.+|..|+.+|..++..-.+ +.. +. -...+|
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~---------------------~~~---i~------------~~g~I~ 237 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG---------------------LLA---IF------------KSGGIP 237 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH---------------------HHH---HH------------HTTHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh---------------------HHH---HH------------HcCCHH
Confidence 8888888864 4899999999999998753100 000 00 012567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----C
Q 000143 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N 1654 (2058)
Q Consensus 1580 ~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~ 1654 (2058)
.|...+++.+..++..|+.++.+++.. .......+. ...++.|..++.++++.++..+..++..++....+. .
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777788888889999999999999874 212212222 468899999999999999999999999887421110 1
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch-hH--HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~-~~--l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f 1731 (2058)
-...++.|+..+++......+..++.++..++..-.. .. -...+|.++..+.+.+..++..++.++..++......
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 2357888888888655554455566666665531111 11 1346788889999889999999999999988655331
Q ss_pred HHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc---ch-hchHHhHhhhcCC-C-CHHHHHHHHHHHHHHHHH
Q 000143 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-D-NWRIRQSSVELLGDLLFK 1805 (2058)
Q Consensus 1732 ~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~---~l-~~llp~L~~~l~d-~-~~~vR~sav~ll~~Ll~~ 1805 (2058)
.....++|.++..+.++++.+|..++.++..+....... .+ ...+|.|.+.+.+ . ...+|..++.+++.+..
T Consensus 395 -~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~- 472 (780)
T 2z6g_A 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS- 472 (780)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh-
Confidence 123578999999999999999999999998875421110 01 1256777776654 2 34899999999988721
Q ss_pred hhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhChhhHH----
Q 000143 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLK---- 1880 (2058)
Q Consensus 1806 ~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~-~~VR~aA~~~l~~lv~~~~~~l~---- 1880 (2058)
.+.+ .+.....+... ..++.|...+.+.. ..+|..|..+++.++.+.. ...
T Consensus 473 -------------~~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~ 528 (780)
T 2z6g_A 473 -------------RHQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE 528 (780)
T ss_dssp -------------SSTT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH
T ss_pred -------------cCch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 0000 11111111111 12444555544433 5899999999888875221 111
Q ss_pred -HhHHHHHHHHHHH----------------hc--CCCHHHHHHHHHHHHHHHHHhCcc--h-hhchHHHHhhhcCCCChh
Q 000143 1881 -EIMPVLMNTLISS----------------LA--SSSSERRQVAGRALGELVRKLGER--V-LPSIIPILSRGLKDPSAS 1938 (2058)
Q Consensus 1881 -~~l~~L~~~l~~~----------------L~--~~~~~~R~~A~~~Lg~L~~~lg~~--~-l~~llp~L~~~l~d~~~~ 1938 (2058)
..+|.++..+... +. ....+++..++.+|+.++..-... + -...+|.|.+.+.+++++
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 608 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence 1234444433221 00 012456778888888876321100 1 246789999999999999
Q ss_pred HHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1939 RRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
+|..++.+|+.+... ++ ....+ ...++.|..++.+++++||++|+.++..+....+.
T Consensus 609 v~~~a~~aL~~L~~~--~~-~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 609 IQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHhcC--HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999987632 21 22222 23678889999999999999999999999876543
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=5.5e-15 Score=190.72 Aligned_cols=379 Identities=15% Similarity=0.102 Sum_probs=281.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-hh---hhH-H-hHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQL-SA---QGV-K-LVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l-~~---~~v-~-~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
+|.++..+.++++.+|..|..+++.+.... .+ ..+ . .++|.+++.+.+. ++.+|..|+.+|+.++...++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 677777788889999999999999986522 21 122 2 6899999999988 899999999999999986655433
Q ss_pred hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--h-hH-HhHHHHHHhccCC-CChhHH-HHHHHHHhcccc-
Q 000143 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P-EI-ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFV- 1566 (2058)
Q Consensus 1495 ~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i-~~lvp~Ll~~l~d-~~~~vr-~al~~L~~~~f~- 1566 (2058)
... ..++|.+.++++++++.||..|+++|+.++..... . .+ ..++|.++..+.+ ++..+| .++.+++.....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 222 47899999999999999999999999999874321 1 11 3678999999985 667776 566666652211
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+.........++|.+...+.+.+..++..++.++++++.. .+...... -..++|.+..++.++++.+|..++.+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 1222233466889999999999999999999999999862 21111111 2357899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH-HHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l-~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...+.. .-..++|.+++.+.+ .++.+|..++.+|+.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998643321 113688999998885 56779999999999987532221 12 3688999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------chhch-----HHh
Q 000143 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLL-----LPA 1779 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~l~~l-----lp~ 1779 (2058)
+.+++.++.........++ ..++|.++..+.++++.+|..++.++..++...... ....+ ++.
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHH
Confidence 9999999876443333333 358999999999999999999999999887643321 11112 455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
|.....+++..++..++.++..++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666667778889999998888874
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.68 E-value=2.9e-14 Score=195.32 Aligned_cols=492 Identities=12% Similarity=0.070 Sum_probs=328.9
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc-cc-hhch
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-LK-KYGI 1379 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~-l~-~~~i 1379 (2058)
++.+++.|.++++.++.+++..+...-.. .-....++.++..|. +++..+|..|+.+|..+........ +. ...+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56788888999988888777766533211 012456777777555 5578999999999999886432111 11 1257
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~ 1455 (2058)
++.|.+.+.+..++..|..|+.++..++..... ...+ ...+|.++..+.++++.+|..|..+|..++...... .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 888888887655899999999999887653211 1111 247899999999999999999999999998764332 1
Q ss_pred H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhcC
Q 000143 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~ 1531 (2058)
+ ...+|.+++.+.+.+++++..++.+|..++...++.-.. .-...++.|+.++.+.++ .++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 467899999999999999999999999888654432111 112567888888887654 456678888888885322
Q ss_pred ch-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1532 NP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1532 ~~-~i--~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+. .+ ...+|.|+..+.+++..++ .++.++......... ......++|.|...+++.++++|..|+.++++++..
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~- 429 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 429 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-
Confidence 21 12 3568999999998876654 555555442111100 112345889999999999999999999999999762
Q ss_pred CCCCchhhh-HhhhhHHHHHhhCC-CC-HHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TEPKDMIPY-IGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~~~~l~py-l~~ll~~L~~~l~d-~~-~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
.+...... -...++.|..++.+ .+ ..+|..|+.+|+.++...++. .-...+|.|++.|.++..+.+|..
T Consensus 430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508 (780)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHH
Confidence 21111111 12467778777765 33 489999999999987432221 113578999999987666678999
Q ss_pred HHHHHHHHHHHhchh-HH--HHhhHHHHHhhccCC----------------------hhHHHHHHHHHHHhHHHhchhHH
Q 000143 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQR----------------------ASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~~----------------------~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
++++|+.++..-... .+ ..++|.+...+.+.+ ..++..++.+++.++... ...
T Consensus 509 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~ 586 (780)
T 2z6g_A 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNR 586 (780)
T ss_dssp HHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhH
Confidence 999999987421111 11 245666666554432 456777778888776422 111
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc-ccchh--chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~-~~~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
..+ ..++|+++..+.++++.|+..+..++..+...-. ...+. ..++.|.+.+.+.+..+|..|...+..+.
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 112 3468999999999999999999999988752200 01111 25778888899999999999999999885
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.68 E-value=8.8e-15 Score=192.99 Aligned_cols=381 Identities=13% Similarity=0.096 Sum_probs=287.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hH--HhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhH
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v--~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
..++.++..+.++++.+|..|..++..++...... .+ ..++|.+++.+.+. ++.+|..|+.+|+.++...+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45777888888889999999999999886543211 12 46899999999987 89999999999999998665432
Q ss_pred hhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hh-H-HhHHHHHHhccCCCChhHH-HHHHHHHhcc-cc
Q 000143 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT-FV 1566 (2058)
Q Consensus 1494 ~~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~-i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~-f~ 1566 (2058)
... -..++|.|+.++.++++.||..|+++|+.++..... .. + ..++|.|+..+.+++..++ .++.++.... ..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 221 147889999999999999999999999999864211 11 1 4688999999988777775 5666655421 11
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
..........++|.|...+.+.++.++..++.++++++.. .+....... ..++|.|..++.++++.+|..++.+|+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 2223334566889999999999999999999999999862 222222233 268899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH-HHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l-~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...+.. .-..++|.++..|.+. ++.+|..++++|+.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998533221 1136889999998854 6779999999999987532221 11 4678899999999999999999
Q ss_pred HHHHHHhHHHhch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------c---hh--chH
Q 000143 1717 LTLFKYLPRSLGV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLL 1777 (2058)
Q Consensus 1717 l~~l~~la~~~g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~---l~--~ll 1777 (2058)
+.+++.++...+. ....++.. ++|.++..+.++++.+|..++.++..++...... . +. ..+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 9999999887554 44455444 8999999999999999999999999887654321 1 11 146
Q ss_pred HhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1778 PAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1778 p~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+.|.....+++..++..+...+..++
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67777788899999999998888763
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.67 E-value=4.3e-14 Score=186.36 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=277.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~ 1414 (2058)
.++.+++.|. ++++.+|..|+.+|..++...... .+....++|.|.+.+.+++++.+|..|+.+++.++.......
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3556666664 346788888888888887654311 122336889999999887559999999999999987432211
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhc-cCCChHHHHHHHHHHHHHHhh
Q 000143 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1415 ~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L-~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
...+. ..+|.++..+.++++.||..|.++++.++...+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 48999999999999999999999999998653331 12 34789999999 577899999999999999987
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~ 1568 (2058)
.+.........++|.|..++.+.++.|+..|+++|+.++.... ...+ .+.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~----------------------~~~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQ----------------------AVI------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHH----------------------HHH-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHH----------------------HHH-------
Confidence 5544344557899999999999999999999999999975311 1100 000
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 000143 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1569 ~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l 1646 (2058)
-..++|.+...+.+.++.++..|+.++++++.. .+......+ ..++|.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 012566677777777888999999999998762 222222222 35788999999988 999999999999999
Q ss_pred HHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH---H--HHhhHHHHHhhccCChhHHHHHH
Q 000143 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYL 1717 (2058)
Q Consensus 1647 ~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~---l--~~llp~Ll~~l~~~~~~vR~~al 1717 (2058)
+....+. .-..++|.|++.|.+. +..+|..++.+|+.++.....+. + ..+++.+...+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632221 1236889999988754 66689999999999987643432 2 35788999999999999999999
Q ss_pred HHHHHhHHHhchh----------HHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1718 TLFKYLPRSLGVQ----------FQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1718 ~~l~~la~~~g~~----------f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.++..+....... +..++.. .++.+.....+++++++..+...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999987754331 2222211 244555555666666666665555443
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.66 E-value=3.5e-14 Score=187.21 Aligned_cols=381 Identities=14% Similarity=0.110 Sum_probs=286.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhH
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
.-+|.++..+.++++.+|..|..++..++..... ..+ ..++|.+++.+.+.+ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3477888888888999999999999998765431 112 468999999999876 9999999999999998765543
Q ss_pred hhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhcc-CCCChhHH-HHHHHHHhcccc
Q 000143 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2058)
Q Consensus 1494 ~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l-~d~~~~vr-~al~~L~~~~f~ 1566 (2058)
.... ...+|.|+.++.++++.||..|+++|+.++..... ..+ ...+|.|+..+ .+++..++ .++.++......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2222 26899999999999999999999999999864221 112 35788999998 56666665 455555542111
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+.........++|.|...+.+.++.++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222234466889999999999999999999999998852 21111122 2368899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H--HHHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~--l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...... .-..++|.|+..|.+..+..+|..++++|+.++.+.... . -..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998633221 124678999999986536779999999999998632211 1 13678999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------c---hh--chHHh
Q 000143 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLLPA 1779 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~---l~--~llp~ 1779 (2058)
+.+++.++.........|+ ..+++.++..+.++++.++..++.++..++...... . +. ..+..
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987556666666 458999999999999999999999999887644220 0 11 13556
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+.....+++..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 67777888999999998888876
No 34
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.65 E-value=5e-11 Score=164.25 Aligned_cols=779 Identities=10% Similarity=0.081 Sum_probs=416.8
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------H
Q 000143 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------I 1120 (2058)
Q Consensus 1049 ~~~~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~ 1120 (2058)
++.+.++...+..++..+.+|+++.|..|.+.|.+.... +........+ ...+.++.+|-.|.. .
T Consensus 20 d~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 20 DFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp SSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHhh
Confidence 333445557888999999999999999999999887511 1222222222 234457777777654 3
Q ss_pred HhhcCCCCCCCH-HhHHHHhcC---------CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000143 1121 WDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2058)
Q Consensus 1121 w~~~~~~~~~~~-~~ll~~l~~---------~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 1189 (2058)
|...+.+....+ ..+++.+.. .++.+++..+++++.++.. ||+.|+..+..+.+....
T Consensus 93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~----------- 161 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT----------- 161 (1073)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-----------
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-----------
Confidence 655443322344 566665531 3578899999999999864 888899888888876531
Q ss_pred CchhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCC
Q 000143 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~ 1269 (2058)
+...+...+..|..+.+.+..- - ..-+ . ..|..-+ ...+. ..++.+++.+..++... .+
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d~--------~-~~~l---~-~~r~~~l---k~~L~----~~~~~Il~ll~~iL~~~-~~ 220 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFDF--------S-SGQI---T-QVKAKHL---KDSMC----NEFSQIFQLCQFVMENS-QN 220 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTS--------H-HHHB---C-HHHHHHH---HHHHH----HTCHHHHHHHHHHHHHC-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHhc--------c-cccc---c-HHHHHHH---HHHHH----HHHHHHHHHHHHHhccc-CC
Confidence 1124455555555554432110 0 0001 0 1111111 11111 23667777777777652 21
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHH-HhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHh-
Q 000143 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM- 1347 (2058)
Q Consensus 1270 ~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~L-l~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~- 1347 (2058)
..+...++.+++....-++-+.-.-..+++.+ ...|. ++..+.++++|+..++..-.+...+.+..+++.+.
T Consensus 221 ----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 221 ----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp ----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 24566778888887764432100001345555 35554 46789999999998876422222233333332211
Q ss_pred -----------------cCCCHHHHHHHHHHHHHHHhhhCccccc------h--h---chHHHHHHHHhCCCCHHHHHHH
Q 000143 1348 -----------------KSDKYGERRGAAFGLAGVVKGFGISSLK------K--Y---GIAATLREGLADRNSAKRREGA 1399 (2058)
Q Consensus 1348 -----------------~~~~~~vR~~Aa~~L~~l~~~~g~~~l~------~--~---~il~~L~~~l~~~~~~~~R~~a 1399 (2058)
.+++.+ ..-..+++.+...+|..... . . ..+.++......+ +..+=+.+
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d--~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDE--QNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTH--HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhh--HHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 011100 11223333333322211100 0 0 1222233333333 55555556
Q ss_pred HHHHHHHHHHhc-------------------------ccchhhHHHHHHHHHHHcCCCC---------------------
Q 000143 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV--------------------- 1433 (2058)
Q Consensus 1400 l~al~~L~~~lg-------------------------~~~~p~l~~llp~Ll~~l~D~~--------------------- 1433 (2058)
+..+..+.+.+- ..+.|++.++...++..+.-++
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 665555555431 0156677777777776654221
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhc
Q 000143 1434 -VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1434 -~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~ 1509 (2058)
-.+++..-+++..+..-.+.+....+++.+-+.+.. .+|+.+.++|.++|+++.+... .-..+++.+++.|..+..
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 023444555665544222333345666666665553 4699999999999999866554 456889999999998875
Q ss_pred CC-----CHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000143 1510 DT-----HPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2058)
Q Consensus 1510 D~-----~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~ 1582 (2058)
.+ .+.|+...++.+|++.+++.+ .+++.++..+++
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~-------------------------------------- 573 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFE-------------------------------------- 573 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH--------------------------------------
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHH--------------------------------------
Confidence 44 356777788999999887642 233444444444
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCC------CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-c
Q 000143 1583 RGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2058)
Q Consensus 1583 ~~L~d~s~~vr~~A~~~l~~L~~~l~~------~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~ 1655 (2058)
.+.+.++.++..||.++..+|.-... +.+..||++.++..+.....+-.++-.....+|+|.++...|.+. .
T Consensus 574 -~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 574 -FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp -HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchH
Confidence 44444556666777777777653221 123467888888888888877778888889999999999887642 2
Q ss_pred cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh--chhHHHHhhHHHHHhhccCChhHH--HHHHHHHHHhHHHhchhH
Q 000143 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVR--DGYLTLFKYLPRSLGVQF 1731 (2058)
Q Consensus 1656 ~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~--g~~~l~~llp~Ll~~l~~~~~~vR--~~al~~l~~la~~~g~~f 1731 (2058)
+.++..|+..+.. .+..+.... +.+ .+.|++ .++ -.++.+...++...|..|
T Consensus 653 ~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~-----------~~~d~~-~i~~l~~il~~n~~v~~~~g~~f 708 (1073)
T 3gjx_A 653 EHLIEKYMLLPNQ------------VWDSIIQQATKNVD-----------ILKDPE-TVKQLGSILKTNVRACKAVGHPF 708 (1073)
T ss_dssp HHHHHHHTHHHHH------------HHHHHHHHHHHCGG-----------GGGCHH-HHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHhhcCch-----------hccChH-HHHHHHHHHhhhHHHHhhcchhH
Confidence 3333333222210 111111111 111 011110 011 124456677888999999
Q ss_pred HHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcc
Q 000143 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2058)
Q Consensus 1732 ~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~ 1811 (2058)
.|++..+.|-++...+- ....+...+..-|....+. .+.+++ ..+|...+.++...+.+
T Consensus 709 ~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~------ 767 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR------ 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc------
Confidence 99999998877753321 1111111111111111110 111111 13455555666554311
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 000143 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTL 1890 (2058)
Q Consensus 1812 k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l 1890 (2058)
.++ .+ .+.+.+=+...+.++...-....+ ....| +.++..++...+..+.+.+|.+++.+
T Consensus 768 -------~~~----~~----~v~~~~i~pl~~~vl~dY~~~~p~~r~~ev----L~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 768 -------SND----PQ----MVAENFVPPLLDAVLIDYQRNVPAAREPEV----LSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp -------CSC----HH----HHHHHTSHHHHHHTHHHHHHSCGGGCCTHH----HHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred -------CCC----HH----HHHHHhHHHHHHHHHHHHhcCCcccccHHH----HHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 010 11 111111111222222221111100 11222 23333444433333334444444443
Q ss_pred H----HHhc---CCCHHHHHHHHHHHHHHHHHhCcch-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh
Q 000143 1891 I----SSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2058)
Q Consensus 1891 ~----~~L~---~~~~~~R~~A~~~Lg~L~~~lg~~~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~ 1956 (2058)
. ..+. .+.++.|..-.+.+..+..++-... +..++..+..+++.+..++-..+...+.+++.+...
T Consensus 829 f~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 829 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 3 3344 4579999999999998888865432 345677777888888877777777777777766432
Q ss_pred ------hhhHhHHhhHHHHHHHHhcCCC
Q 000143 1957 ------SQLLSFMDELIPTIRTALCDSI 1978 (2058)
Q Consensus 1957 ------~~l~~~~~~ll~~L~~~L~D~d 1978 (2058)
.-+..|.-.++.-+...+.|++
T Consensus 909 ~~~~~~~F~~~~~~~~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 909 EEAAAQSFYQTYFCDILQHIFSVVTDTS 936 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1234455566666666666664
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.64 E-value=6.1e-14 Score=184.89 Aligned_cols=384 Identities=13% Similarity=0.098 Sum_probs=283.0
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l-~~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
..++.+.+.+.++ ++..|..|+.++..+....+ ......+ ..++|.++..+.++ ++.+|..|.+++..++...+..
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4567777778776 78999999888887754321 1222222 25789999999997 8999999999999997643322
Q ss_pred --hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1455 --GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1455 --~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.+ ...+|.++..+.+.++.+|..|+.+|+.++...+..-.. .-..++|.|..++.+.++.|+..|+++|..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 12 467899999999999999999999999999765432111 1136889999999999999999999999999965
Q ss_pred c-Cc---hhHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1530 ~-~~---~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~--~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
- .. .....++|.|+..+.+++..++ .++.++........ ...-.-..++|.+...+.+.++.++..|+.++++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 4 21 2347899999999999888776 45555554211110 0000112467889999999999999999999999
Q ss_pred HHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---C-ccchHHHHHhhcccCCChHHHhh
Q 000143 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N-FPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~-~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++.. .+....... ..++|.+..++.++++.+|..|+.+|+.++....+. . -..++|.|++.|.+ .+..+|..
T Consensus 326 l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~ 402 (530)
T 1wa5_B 326 IVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV-AEYKTKKE 402 (530)
T ss_dssp HTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHH
T ss_pred HHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 222112222 368899999999999999999999999998632221 1 14688889888874 56679999
Q ss_pred HHHHHHHHHHHhch--hH---H--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh-------HHHhHHH-----H
Q 000143 1678 AAQGLSEVLAALGT--VY---F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-------FQNYLQQ-----V 1738 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~--~~---l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~-------f~pyl~~-----i 1738 (2058)
++++|+.++...+. ++ + ..++|.+...+.+.++.+|..++.++..+....... ..+|... .
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 482 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 482 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCc
Confidence 99999999887544 32 2 348899999999999999999999999988754321 1223332 4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1739 LPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1739 lp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
++.+...+.+++++|++.+..++..++
T Consensus 483 ~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 483 MEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 778888889999999998888877654
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=4.4e-13 Score=180.81 Aligned_cols=477 Identities=12% Similarity=0.066 Sum_probs=313.3
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
..+|.+...+.++++.+|..|+.+|+.++...+.... ...+.+++.+++.|.+. ++.+|..|+.+|..++..- .
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~---~- 89 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---E- 89 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH---H-
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---h-
Confidence 3466777777777778888888888888765432211 11246788888888764 8999999999998876521 1
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
.+. .+. -...+|.|.+.+++.++.++..|+.++.+++.. .......
T Consensus 90 -----------------~~~---~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~--~~~~~~~ 135 (644)
T 2z6h_A 90 -----------------GLL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--QEGAKMA 135 (644)
T ss_dssp -----------------HHH---HHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--STTHHHH
T ss_pred -----------------hHH---HHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC--cchhHHH
Confidence 010 010 012567777778888889999999999999874 2122222
Q ss_pred hH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1616 yl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
+. ...+|.|..++.+++++++..++.+|..++...++. .-...++.|++.+++......+..++.+|..++..-.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~ 215 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc
Confidence 22 478999999999999999999999999988532211 1135788888888866555556666777666542111
Q ss_pred h-hHH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1691 T-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1691 ~-~~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
. ..+ ...++.+...+.+.+..++..++.++..++...... .....++|.++..+.++++.+|..++.++..+...
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0 111 347888899998889999999999999998754331 23457899999999999999999999999887643
Q ss_pred hcc---cch-hchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhh
Q 000143 1768 YAT---TSL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2058)
Q Consensus 1768 ~~~---~~l-~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~ 1841 (2058)
... ... ...+|.|.+.+.+ +.+.+|..++..++.+.. .+.+ .+.....+..
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~--------------~~~~---~~~~q~~v~~------ 350 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------------RHQE---AEMAQNAVRL------ 350 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------------SSTT---HHHHHHHHHH------
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc--------------CCch---HHHHHHHHHH------
Confidence 111 011 1256777777654 247999999999998731 0000 0111111111
Q ss_pred HHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcC----------------------C
Q 000143 1842 RNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLAS----------------------S 1897 (2058)
Q Consensus 1842 ~~~vL~~L~~~~~D~-~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~----------------------~ 1897 (2058)
...++.+...+.+. ...+|..|..+++.+..+.. ....+. ..+++.++..+.+ .
T Consensus 351 -~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~ 428 (644)
T 2z6h_A 351 -HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428 (644)
T ss_dssp -TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred -ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence 12345555555444 46899999988888875322 112111 1233333333332 2
Q ss_pred CHHHHHHHHHHHHHHHHHhCcc--h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHH
Q 000143 1898 SSERRQVAGRALGELVRKLGER--V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRT 1972 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~--~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~ 1972 (2058)
+.+++..+..+|+.++...... + -...+|.|.+.+.+.++++|..++.+|+.+... ++ ....+ ...++.|..
T Consensus 429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L~~ 505 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTE 505 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHHHH
Confidence 3556677778888776432111 1 246789999999999999999999999887642 21 11222 335678888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000143 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2058)
Q Consensus 1973 ~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~ 2002 (2058)
++.+++++||++|+.+++.+....+..+..
T Consensus 506 ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 535 (644)
T 2z6h_A 506 LLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhccCcHhhhc
Confidence 999999999999999999998766544433
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.63 E-value=2.5e-13 Score=181.16 Aligned_cols=539 Identities=14% Similarity=0.094 Sum_probs=327.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L 1504 (2058)
+-..+.+++...|..+..-+-.+ ..-++.+....+.+++.+.+++...|+.+...+..++...++.+ ..+++.+
T Consensus 39 ir~~l~~~~~~~k~~~l~kli~~--~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l 112 (618)
T 1w63_A 39 IRSSFREEDNTYRCRNVAKLLYM--HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCI 112 (618)
T ss_dssp HHHHHTTTCTTTHHHHHHHHHHH--HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHH--HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHH
Confidence 33445555555555443222222 22334455677778888889999999888887777776554322 3567778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHH
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~ 1583 (2058)
.+-++|+++.+|..|+++|+.++. ....+.++|.+.+.+.|+++++| .|+.++....- ........+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 888999999999999999999873 23457889999999999999998 46655554110 111223456777788
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC---------------CCCHHHHHHHHHHHHHHHH
Q 000143 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1584 ~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~---------------d~~~~vR~~a~~aLg~l~~ 1648 (2058)
.+.|+++.++..|+.+++.++.. ++ +...++..++|.+...+. .+++-.+....++++.++.
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~--~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCER--SP-DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCS--HH-HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHHh--Ch-HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 88999999999999888888752 21 112233445555555443 2467778888888888875
Q ss_pred hhcc--cCccchHHHHHhhccc--CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhH
Q 000143 1649 GMGE--ENFPDLVSWLLDALKS--DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1649 ~lg~--~~~~~llp~L~~~L~~--d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la 1724 (2058)
.-.+ +.+.++++.+...... ..+..+...++.++..+.. ........++.+...+.++++.+|..++.+++.++
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 3211 1222344433332211 1122344555555544311 11122345666777788889999999999999999
Q ss_pred HHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000143 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2058)
Q Consensus 1725 ~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~ 1804 (2058)
...+..|.+|. +.++..+.|++..||..+++.+..++. ...++.+++.+.+.+.+.+..+|..++..++.+..
T Consensus 342 ~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 342 QTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87666555554 466677889999999999988877643 34466788888888888889999999999999853
Q ss_pred HhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHH
Q 000143 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP 1884 (2058)
Q Consensus 1805 ~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~ 1884 (2058)
+..+ ..+.....+.+.+ .+....++..+...+..++.+.|..-...++
T Consensus 415 k~~~----------------~~~~~v~~ll~lL----------------~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~ 462 (618)
T 1w63_A 415 KYAP----------------SKRWHIDTIMRVL----------------TTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ 462 (618)
T ss_dssp SSCC----------------CHHHHHHHHHHHH----------------HHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred HhCc----------------cHHHHHHHHHHHH----------------HhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence 2110 0111112222222 1111223333455566666656644444555
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---------h-hhchHHHHhhhcC--CCChhHHHHHHHHHHHHHH
Q 000143 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGER---------V-LPSIIPILSRGLK--DPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1885 ~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---------~-l~~llp~L~~~l~--d~~~~vR~~a~~aL~eii~ 1952 (2058)
.+...+.... ..+.. ...+++++|+.+..+... . ...+++.+...++ ..++.+|..+..++..+..
T Consensus 463 ~L~~~l~~~~-~~~~~-~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 463 RLYKAILGDY-SQQPL-VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLST 540 (618)
T ss_dssp HHHHHHHHCC-SCSHH-HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccc-ccHHH-HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5555543211 12344 446899999998866321 1 1234455555443 4678899999999988877
Q ss_pred hhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc
Q 000143 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1953 ~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~ 2032 (2058)
..+.. .+.+...+.....|.|++||+.|...+..+.. . +++...++..++-.++ .......+|+.+.
T Consensus 541 ~~~~~-----~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~--~----~~~~~~vl~~~P~~~~--~~~~~~~~~~~~~ 607 (618)
T 1w63_A 541 RFTCT-----VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK--Y----DHMRSALLERMPVMEK--VTTNGPSEIVQTN 607 (618)
T ss_dssp TCSSC-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--T----TTHHHHHHSCCCCCCC---------------
T ss_pred hCcch-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--c----HHHHHHHhhcCCCCCc--cccCCcccccCCC
Confidence 66421 24445555666789999999999987777653 1 1345556666664332 2344456666554
Q ss_pred CC
Q 000143 2033 TT 2034 (2058)
Q Consensus 2033 ~~ 2034 (2058)
++
T Consensus 608 ~~ 609 (618)
T 1w63_A 608 GE 609 (618)
T ss_dssp --
T ss_pred CC
Confidence 43
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.63 E-value=1.8e-13 Score=180.56 Aligned_cols=460 Identities=11% Similarity=0.052 Sum_probs=308.3
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc--c---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cc
Q 000143 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SS 1373 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~--~---~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~ 1373 (2058)
..++.|+..|+++++.+|..++.++..+...... . ....++.++..|..++++.+|+.|+.+|..+...... ..
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 4577888888899999999999998887753211 1 2357888888887776899999999999987653211 11
Q ss_pred cchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1374 l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.....+|.|.+.+.++ ++..|..++.++..++......-.... ...+|.++..+.++++.+|..+..++..++...+
T Consensus 97 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 11236788898888876 789999999999999876432212221 3589999999999999999999999988764322
Q ss_pred hh--hH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1453 AQ--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1453 ~~--~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
.. .+ ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+...+.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 11 245777777776544 45566778888888754221111111368899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
....... ....++|.+.+.+.+.+++++..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6422100 0113566666777777788888888888888652
Q ss_pred CCCCchhhhH-hhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TEPKDMIPYI-GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~~~~l~pyl-~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++....... ...++.+..++.+ .++.+|..++.+|+.++...++. .-...+|.|.+.|.++..+.+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 211111111 2457777777764 44899999999999997532221 112578999999987665678999
Q ss_pred HHHHHHHHHHHhchh-HH--HHhhHHHHHhhccCChhHHHHHHHHHH----------------------HhHHHhchhHH
Q 000143 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLTLFK----------------------YLPRSLGVQFQ 1732 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~~~~vR~~al~~l~----------------------~la~~~g~~f~ 1732 (2058)
++++++.++..-... .+ ..++|.+...+.+.++.+|..+.++++ .++... +..
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 999999887532111 11 356788888777766666665544443 333211 111
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hcccch-hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~--~~~~~l-~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
..+ ...+|.++..+.+++++++..+..++..+... +..... ...++.|.+.+.+++..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 23678999999999999999999998876521 111001 12567888888999999999988887654
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.63 E-value=2.4e-13 Score=183.38 Aligned_cols=462 Identities=11% Similarity=0.069 Sum_probs=319.3
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-cccc
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g-~~~l 1374 (2058)
.++.|+..|.++++.+|..++.+|..+....... ....++.++..|..+++..+|..|+.+|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4677778888899999999999998887643211 236788888888777678999999999987765321 1111
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~ 1453 (2058)
.....++.|.+.+.++ ++.+|..|+.++..++.........+. ...+|.++..+.++++.++..+..++..++...+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 1236788899888876 789999999999999876543223333 36899999999999999999999999988753222
Q ss_pred h--hH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 ~--~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
. .+ ...+|.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+...+.+.++.++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 346788888887654 566778888988888543211111113578999999999999999999999999976
Q ss_pred hcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC
Q 000143 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1529 ~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
...+.. ....++|.|.+.+.+.+++++..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 421100 0113566666777777788888888888888752
Q ss_pred CCCchhhh-HhhhhHHHHHhhCCC--CHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhhH
Q 000143 1609 EPKDMIPY-IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2058)
Q Consensus 1609 ~~~~l~py-l~~ll~~L~~~l~d~--~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~a 1678 (2058)
.+...... -...++.|..++.+. .+.+|..++.+|+.++...++. .....+|.|.+.|.++.+..+|..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 21111111 124677788877653 3899999999999997532321 1135789999999876666789999
Q ss_pred HHHHHHHHHHhchh-HH--HHhhHHHHHhhccC----------------------ChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~----------------------~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+++|+.++..-... .+ ..++|.+.+.+.+. +..++..++.++..++........-
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 453 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99998886432111 11 34566666665543 2456667777777776543222111
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc-ccch--hchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~-~~~l--~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
.-...+|+++..+.+.+++++..+..++..+...-. ...+ ...++.|.+.+.+++..+|..+...++.+.
T Consensus 454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 123478999999999999999999999887753200 0011 125678888899999999999999999873
No 40
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.62 E-value=1.2e-10 Score=165.90 Aligned_cols=787 Identities=10% Similarity=0.074 Sum_probs=423.0
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----h
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~----~ 1208 (2058)
..++..+.+++...|+.|.+.|..+ +..|+.|.....-+.. +.+..+|..++..|++.... +
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~-------------s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF-------------STNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH-------------CSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh-------------CCCHHHHHHHHHHHHHHHHhhCccC
Confidence 4555555667777888888888655 5667776654444422 12346899999999887642 2
Q ss_pred CCCChHHHHHHHHHhhc---cCC-----CHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLISRAL---ADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~~~L---~d~-----~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
+.++...+-..++.... .++ +..||..+..+...++....++.|+++++.+...+.. + +..++.+
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~----~~~~~~~ 157 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---S----VNVCENN 157 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---C----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---C----hHHHHHH
Confidence 33333334444432111 112 4678888888888877776667899999988877642 1 1357788
Q ss_pred HHHHHHHHhHhccCCc-chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKDDP-KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~~p-~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
+..|..+++.+..... .+. ..-+...-. .+...++.++..+...+....+..++..+.
T Consensus 158 l~~L~~l~eev~~~~~~~~~--------------~~r~~~lk~-------~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMT--------------QAKALHLKN-------SMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSC--------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhh--------------hHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888865432110 000 000000000 001112333333344444444567888888
Q ss_pred HHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hccc---chhhHHHHHHHHHH--------
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK-LGRL---FEPYVIQMLPLLLV-------- 1427 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~---~~p~l~~llp~Ll~-------- 1427 (2058)
.++...+.-..........+++.+.+.+.. ++..|..|+.++..+... ++.. +...+..+++.++.
T Consensus 217 ~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p 294 (1049)
T 3m1i_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMP 294 (1049)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCC
Confidence 888877664432222223567766643322 678899999888887754 1111 22222222222222
Q ss_pred ----------HcCCCCHHHHHHHHHHHHHHHHhhh---------hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1428 ----------AFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1428 ----------~l~D~~~~VR~aA~~al~~l~~~l~---------~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
...|.+..+.....+.+..++..+. ...+..+++.++.....++..+...+++.+..+++.
T Consensus 295 ~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~ 374 (1049)
T 3m1i_C 295 VTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVAD 374 (1049)
T ss_dssp TTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 1234455555444444444433211 112345667777766667788888888888887762
Q ss_pred ------ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh-h----HHHHH
Q 000143 1489 ------APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-H----TKYSL 1557 (2058)
Q Consensus 1489 ------~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~----vr~al 1557 (2058)
......++++.+++.++..+.-+.. + .+..+.+.+. +-....|.+. . .+.++
T Consensus 375 l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed-~------------~~~~dd~~e~----~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 375 LFYEPLKKHIYEEICSQLRLVIIENMVRPEE-V------------LVVENDEGEI----VREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT-C------------CEEECTTSCE----EECSSCCHHHHHHHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHhcCCCcc-e------------eeeeCCCCcc----hHhhhccchHHHHHHHHHHHH
Confidence 2234556777777777665532110 0 0000000000 0000000000 0 11222
Q ss_pred HHHHhccccccCChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC-----C
Q 000143 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-----D 1630 (2058)
Q Consensus 1558 ~~L~~~~f~~~~~~~~l~~llp~L~~~L~--d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~-----d 1630 (2058)
..+... .....+..+.+.+...+. ..+|..+..++.++|.++..+.. ..-.++++.+++.+..+.. |
T Consensus 438 ~~l~~~-----~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~-~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 438 VYLTHL-----NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE-DTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHH-----CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH-HHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHcc-----CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc-hhhHHHHHHHHHHHHHHHhhhcccc
Confidence 222210 001223344555555554 36799999999999988764322 1123567788888777543 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcc--cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-----------HHHHh
Q 000143 1631 PIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----------YFEHI 1697 (2058)
Q Consensus 1631 ~~~~vR~~a~~aLg~l~~~lg~--~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-----------~l~~l 1697 (2058)
+.+.+|..++.++|.+++-+.. ++++.+++.+++.+. +.+..++..|+.++..++..++.. +++.+
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~-~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~i 590 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 5666777788899988765543 377888888888886 456779999999999999887753 35566
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhc--hhHHHhHHHHHHHHHHhccC-----------C-CH-HHHH--HHHHH
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLAD-----------E-NE-SVRD--AALGA 1760 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g--~~f~pyl~~ilp~Ll~~L~d-----------~-~~-~VR~--~a~~a 1760 (2058)
+..+...+.+.+...+..++.+++.+....| +...+|+..+++++...+.. . ++ .++. ..+.+
T Consensus 591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~ 670 (1049)
T 3m1i_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKT 670 (1049)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHH
Confidence 6666566666666667888999999988887 35889999999988755421 0 11 1222 22344
Q ss_pred HHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChh
Q 000143 1761 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840 (2058)
Q Consensus 1761 l~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~ 1840 (2058)
+..++..++.. +.|.+...+.+- ....+....++.......|.... .. .. ...
T Consensus 671 ~~~~~~~l~~~----f~p~~~~i~~~~-----l~~~~~~~~~~~~~~~~~g~~~~-------~~---p~----~~~---- 723 (1049)
T 3m1i_C 671 NVAVCTSMGAD----FYPQLGHIYYNM-----LQLYRAVSSMISAQVAAEGLIAT-------KT---PK----VRG---- 723 (1049)
T ss_dssp HHHHHHHHGGG----GHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCGGGG-------GS---HH----HHH----
T ss_pred HHHHHHHhhHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccCchhh-------hh---HH----HHH----
Confidence 44555555544 334332221100 00011111111000000000000 00 00 000
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC---hhhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHh
Q 000143 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLASSSSERR-QVAGRALGELVRKL 1916 (2058)
Q Consensus 1841 ~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~---~~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg~L~~~l 1916 (2058)
...+.+.+. ..+....... +....+++|.+++.++..........| ..+..+++.++..+
T Consensus 724 -~~~~~~~l~---------------~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~ 787 (1049)
T 3m1i_C 724 -LRTIKKEIL---------------KLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKV 787 (1049)
T ss_dssp -HHHHHHHHH---------------HHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH---------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH
Confidence 000111110 1111111111 112345566666655544322111101 34778889999988
Q ss_pred Ccch---hhchHHHHhhh----cC---CCChhHHHHHHHHHHHHHHhhChhhhH--h-HHhhHHHHHHHHhcCCCHHHHH
Q 000143 1917 GERV---LPSIIPILSRG----LK---DPSASRRQGVCIGLSEVMASAGKSQLL--S-FMDELIPTIRTALCDSILEVRE 1983 (2058)
Q Consensus 1917 g~~~---l~~llp~L~~~----l~---d~~~~vR~~a~~aL~eii~~~~~~~l~--~-~~~~ll~~L~~~L~D~d~~VR~ 1983 (2058)
|+.+ ++.+++.+... ++ ++.|++|......++.++..+...-+. + ....++.....++..+++++..
T Consensus 788 ~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~ 867 (1049)
T 3m1i_C 788 GHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEV 867 (1049)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHH
Confidence 8553 44555444433 32 357999999988889888877543221 1 2456677777788899999999
Q ss_pred HHHHHHHHHHHHhCh----h--------hHHHHHHHHHHhcCCCcch---HHHHHHHHHHHh
Q 000143 1984 SAGLAFSTLFKSAGM----Q--------AIDEIVPTLLHALEDDQTS---DTALDGLKQILS 2030 (2058)
Q Consensus 1984 ~Aa~a~~~l~~~~g~----~--------~~~~ilp~Ll~~L~~~~~~---~~al~aL~~i~~ 2030 (2058)
.+...+..+....+. . +...++..++..|.|..-+ +....-|++++.
T Consensus 868 ~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 868 NGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHH
Confidence 999999998766432 1 1224455556666554321 344445555543
No 41
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=8.7e-13 Score=173.99 Aligned_cols=467 Identities=12% Similarity=0.074 Sum_probs=294.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l-~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
.+|.+.+.+.+++..+|..|+..|+.++...+... ....+..++.+.+.+.+ +++.+|..|+.+|..++.. ++
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~-- 92 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---RE-- 92 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HH--
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---ch--
Confidence 45555555555566666666666666654322110 00123577788888864 4899999999999988652 11
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+..+. -...+|.+.+.+++.++.++..++.++.+++.. ++......
T Consensus 93 ----------------~~~~i~---------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i 139 (529)
T 1jdh_A 93 ----------------GLLAIF---------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--QEGAKMAV 139 (529)
T ss_dssp ----------------HHHHHH---------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CTTHHHHH
T ss_pred ----------------hHHHHH---------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CcchHHHH
Confidence 111000 012567777778888889999999999999873 21111111
Q ss_pred -HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1617 -l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
-...+|.|..++.+++++++..+..++..++..-.+. .-...+|.+++.+++......+..+...|..+...-..
T Consensus 140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence 2468899999999999999999999999887521110 11256888888887665554555556666555421110
Q ss_pred -hHH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000143 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1692 -~~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~ 1768 (2058)
..+ ...++.+...+.+.++.++..+++++..++...... .....++|.+++.+.++++.+|..++.++..+....
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 111 357888899999999999999999999998754331 134578999999999999999999999998875421
Q ss_pred ccc---ch-hchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhH
Q 000143 1769 ATT---SL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2058)
Q Consensus 1769 ~~~---~l-~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~ 1842 (2058)
... .. ...+|.+.+.+.+ +++.+|..++..++.+.. .+.+ .+.....+.+.
T Consensus 298 ~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~--------------~~~~---~~~~~~~i~~~------ 354 (529)
T 1jdh_A 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------------RHQE---AEMAQNAVRLH------ 354 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------------SSTT---HHHHHHHHHHT------
T ss_pred HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc--------------CCch---HHHHHHHHHHc------
Confidence 100 01 1256777777653 458999999999998731 0000 11111122211
Q ss_pred HHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcCCCHHHHHHHH--------------
Q 000143 1843 NEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAG-------------- 1906 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~~-~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~~~~~~R~~A~-------------- 1906 (2058)
..++.+...+.+.. ..+|..+..+++.+..+.. ....+. ..+++.++..+.++++++|..|+
T Consensus 355 -~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~ 432 (529)
T 1jdh_A 355 -YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432 (529)
T ss_dssp -TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCH
T ss_pred -CChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccH
Confidence 12445555555544 6889999888888875322 222222 23455555556665666665444
Q ss_pred --------HHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHh
Q 000143 1907 --------RALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTAL 1974 (2058)
Q Consensus 1907 --------~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L 1974 (2058)
.+++.++...... .-...+|.|...+.++++++|..++.+++.+... ++...... ...++.|...+
T Consensus 433 ~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHh
Confidence 3444443211000 1235678899999999999999999999876532 21111111 35678889999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 000143 1975 CDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1975 ~D~d~~VR~~Aa~a~~~l 1992 (2058)
.++|++||+.|..++.++
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999998775
No 42
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.59 E-value=3.6e-10 Score=157.04 Aligned_cols=586 Identities=10% Similarity=0.058 Sum_probs=351.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC----ChHHHH
Q 000143 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIM 1217 (2058)
Q Consensus 1142 ~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~----~~~~l~ 1217 (2058)
.++..|+.|-+-|..+- ..|+.|.....-|.. + + ..+..+|..++..|++....++.+ +...+-
T Consensus 20 sd~~~r~~A~~~L~~~q-~sp~aw~~~~~iL~~-------~--~--~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLR-SSSTGWKICHEIFSE-------K--T--KYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp SCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTTC-------T--T--TSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-cChhHHHHHHHHHhC-------C--C--CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 37888888877776554 457766544333321 0 0 114578999999988877766666 555555
Q ss_pred HHHHHhh--cc--CCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhcc
Q 000143 1218 TFLISRA--LA--DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293 (2058)
Q Consensus 1218 ~~Li~~~--L~--d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~ 1293 (2058)
..++.-. .. +....+|..+..+...++....+..|+.+++-+...+..... . ..-...+..|..+.+.+..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~---~--~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ---S--EFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC---H--HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh---h--HHHHHHHHHHHHhHHHHHh
Confidence 5544211 11 345679999888888877776667888888877776654111 0 1122334445544444322
Q ss_pred CC-c-------------------chHHHHHHHHhhhC----CCCHHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHH
Q 000143 1294 DD-P-------------------KVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2058)
Q Consensus 1294 ~~-p-------------------~i~~iv~~Ll~~L~----~~~~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L 1346 (2058)
.+ + .++.+++..+..|. ..++.++..+.+|+..++.-.+... ..+++.++..+
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 11 0 02223444444442 2566777888899888887543221 46777777655
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHH--HHHH----hCCCCHHHHHHHHHHHHHHHHHhcc--------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLGR-------- 1412 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L--~~~l----~~~~~~~~R~~al~al~~L~~~lg~-------- 1412 (2058)
. +...|..|+.||..++....... ....++..+ ...+ .++.|.+.+++....+..+++.+-.
T Consensus 243 ~---~~~~r~~A~ecL~ei~~k~~~~~-~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 243 Q---IEELRCAACETMTEIVNKKMKPL-EKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp T---SHHHHHHHHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred C---ChHHHHHHHHHHHHHHHcCCChh-hHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3 37899999999999987543211 111223222 1212 1134666666554444444332111
Q ss_pred ------cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh---h-----hh----HHhHHHHHHHhcc---CCC
Q 000143 1413 ------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QG----VKLVLPSLLKGLE---DKA 1471 (2058)
Q Consensus 1413 ------~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~---~-----~~----v~~llp~Ll~~L~---~~~ 1471 (2058)
...+.+..+++.++.+++++++.|-..+..-+..+...+. . .. +..+++.++..+. +.+
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 1226777899999999999999988877776666654321 1 11 2445555555553 112
Q ss_pred h-------------HHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1472 W-------------RTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1472 ~-------------~~R~~a~~~Lg~la~~~p~~l~~~L~-~Iip~L~~~L~---D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
| ..|+....++..++...|+....++- .+.+.+.+.+. +.++..+++++.+|+.+++.+++..
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~ 478 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD 478 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 2 23444445555555555655444222 33333444442 3468999999999999999776421
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-----d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
.. . .+ ..+.+..+++.+...++ +..+.+|..++.++|..++.+..
T Consensus 479 ~~---------~-~~--------------------~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 479 AF---------F-NE--------------------VDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp GT---------B-CS--------------------SSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred cc---------c-Cc--------------------ccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 00 00112224444444433 67789999999999999987654
Q ss_pred CCchhhhHhhhhHHHHH--hhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccC----C----------
Q 000143 1610 PKDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N---------- 1670 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~--~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d----~---------- 1670 (2058)
. ..|++.+++.+.. .+.++++.||..|+.++..+++.++.. |.+.++..+...|... .
T Consensus 529 ~---~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 529 E---SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp C---CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred C---chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 2 2477888888888 788899999999999999999988765 4455555554444311 0
Q ss_pred ------ChHHHhhHHHHHHHHHHHhch--h----HHHHhhHHHHHhhc----cC----ChhHH-HHHHHHHHHhHHHhch
Q 000143 1671 ------SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1671 ------~~~~R~~aa~~L~~i~~~~g~--~----~l~~llp~Ll~~l~----~~----~~~vR-~~al~~l~~la~~~g~ 1729 (2058)
..+.+.....++|.++...+. + +++.+++.++..+. .. +...+ ...+.+++.+++.+..
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 012456688899999987652 1 56667766655443 11 11111 1346677888877642
Q ss_pred h------HHHhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhh
Q 000143 1730 Q------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782 (2058)
Q Consensus 1730 ~------f~pyl~~ilp~Ll~~L~--d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~ 1782 (2058)
. ....+..+++.++..+. ..++.||+.+..+++.++..++.. +..++|.+.+
T Consensus 686 ~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~ 745 (980)
T 3ibv_A 686 RGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLIS 745 (980)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHH
Confidence 1 45567778888877776 457889999999999999888766 3334454443
No 43
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.56 E-value=1e-09 Score=152.41 Aligned_cols=767 Identities=13% Similarity=0.099 Sum_probs=412.7
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----h
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~----~ 1208 (2058)
+.++..+-+++...|+.|-+-|.. .+..|+.|.....-| .. +.+..+|..++..|+..... +
T Consensus 19 e~av~~ly~p~~~~r~~A~~~L~~-~q~sp~aw~~~~~iL-~~------------s~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 19 DQVVSTFYQGSGVQQKQAQEILTK-FQDNPDAWQKADQIL-QF------------STNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH-HHHCTTGGGGHHHHH-HH------------CCCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHH-HHcCccHHHHHHHHh-cC------------CCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 556666656666677777766654 445677776554444 21 12347888888888876553 3
Q ss_pred CCCChHHHHHHHHH---hhccCC-----CHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLIS---RALADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~---~~L~d~-----~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
+.++...+-..++. +...++ ...++.....+...++....++.|+.+++-+...+... . ...+.+
T Consensus 85 ~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-----~--~~~~~~ 157 (1023)
T 4hat_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-----V--NVCENN 157 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-----H--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-----H--HHHHHH
Confidence 33333333333331 111222 35667777777777776665678999998888776431 1 345667
Q ss_pred HHHHHHHHhHhccC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
+..|..+.+.+... ...+ ...-+...-.. +...++..+..+...+....+......+.
T Consensus 158 L~iL~~L~EEV~~~~~~~l--------------~~~r~~~lk~~-------l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQM--------------TQAKALHLKNS-------MSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTS--------------CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccc--------------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77887777643220 0000 00000000011 11113334444444444445566777788
Q ss_pred HHHHHHHhhhCccccchhchHHHHH-HHHhCCCCHHHHHHHHHHHHHHHH-Hh-cc--cchhhHHHHHHHHHHH----cC
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLR-EGLADRNSAKRREGALLAFECLCE-KL-GR--LFEPYVIQMLPLLLVA----FS 1430 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~-~~l~~~~~~~~R~~al~al~~L~~-~l-g~--~~~p~l~~llp~Ll~~----l~ 1430 (2058)
.++...+.-.....+...++++.+. ..+. ++..|+.|+.++..+.. .. +. .++..+..+++.++.. +-
T Consensus 217 ~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888877755444333447888888 7775 56789999998887764 12 11 1332333333332211 11
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHH
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKL 1504 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l------~~~L~~Iip~L 1504 (2058)
......+. .+ ..-.+.+...-..-+.++..+.+.....+ .+.+...+..+
T Consensus 294 p~~~~l~~-----------------------~~-~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 294 PVTADLKA-----------------------TY-ANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CTTCCHHH-----------------------HH-HHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred CCcchHHH-----------------------HH-hccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 11111110 00 00011111111122223322222211111 12222223345
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcC---------chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHh
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIK---------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~---------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~ 1575 (2058)
+.+...++.+|-..++.-+..+++.+- .|.+..+++.++..+.-|.+.. .+....+.-..
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~-----------ive~d~~~~~~ 418 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-----------VVENDEGEIVR 418 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-----------EEECTTSCEEE
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-----------cCCCCCccHHH
Confidence 555555677777777777777765321 2345677777777776664210 00000000000
Q ss_pred hHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhcc
Q 000143 1576 LLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
...+|.+. +.-+..-+++..++.+.++ + .++.+++.+.+.+.+ .+|..|+++.-|+|++++++.+
T Consensus 419 -------e~~~d~d~~~~f~~~Rd~L~~l~~l~~~--~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~ 486 (1023)
T 4hat_C 419 -------EFVKESDTIQLYKSEREVLVYLTHLNVI--D---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE 486 (1023)
T ss_dssp -------CSSCCGGGHHHHHHHHHHHHHHHHHCHH--H---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCH
T ss_pred -------HhccchHHHHHHHHHHHHHHHHhccCHH--H---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 00011110 0001111556666654221 2 344456666666654 6899999999999999987765
Q ss_pred c----CccchHHHHHhhccc----CCChHHHhhHHHHHHHHHHHhc--hhHHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1653 E----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1653 ~----~~~~llp~L~~~L~~----d~~~~~R~~aa~~L~~i~~~~g--~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
+ ++++++|.|++.+.. |....+|..+++.+|.+.+.+. +++++.+++.++..+.++++.+...++.+|..
T Consensus 487 ~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~ 566 (1023)
T 4hat_C 487 DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 3 567888888776643 2334466677888988877664 34788999999999988899999999999999
Q ss_pred hHHHhchhHH--------HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-----chhchHHhHhhhcC----
Q 000143 1723 LPRSLGVQFQ--------NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIF---- 1785 (2058)
Q Consensus 1723 la~~~g~~f~--------pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-----~l~~llp~L~~~l~---- 1785 (2058)
++...+..+. ||++.++..+...+.+-.+.-+..+.+|++.++...+.. .++.+++.+...+.
T Consensus 567 l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 9999888774 699999998888887777777788999999998876533 22223332221110
Q ss_pred ----CCC-HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHH---HHHHH---HHh--
Q 000143 1786 ----NDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE---VLAAL---YMV-- 1852 (2058)
Q Consensus 1786 ----d~~-~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~---vL~~L---~~~-- 1852 (2058)
+.+ |. -......+..++. ....+...+|..+... ++..+ |..
T Consensus 647 ~~~~~~~~~~-d~~~~~~l~~il~------------------------~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 647 QSTANPTLLL-DSETVKIIANIIK------------------------TNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp HHHHCTTGGG-CHHHHHHHHHHHH------------------------HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchhhc-CHHHHHHHHHHHH------------------------HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0000111111111 1112233444333221 11111 110
Q ss_pred ------------hcCCCH------HHHHHHHHHHHHHHhhCh---hhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHH
Q 000143 1853 ------------RSDVSL------SVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERR-QVAGRALG 1910 (2058)
Q Consensus 1853 ------------~~D~~~------~VR~aA~~~l~~lv~~~~---~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg 1910 (2058)
...... .+|+..+..+...+...+ .....++|.+++.++.-.....+..| .....+++
T Consensus 702 ~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 702 SMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp HHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 011112 234444555555554332 12344567776666654333333333 23567778
Q ss_pred HHHHHhCcchh---hchHHHH----hhhcCC---CChhHHHHHHHHHHHHHHhhChhhhH---hHHhhHHHHHHHHhcCC
Q 000143 1911 ELVRKLGERVL---PSIIPIL----SRGLKD---PSASRRQGVCIGLSEVMASAGKSQLL---SFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1911 ~L~~~lg~~~l---~~llp~L----~~~l~d---~~~~vR~~a~~aL~eii~~~~~~~l~---~~~~~ll~~L~~~L~D~ 1977 (2058)
.++.++|..+. +.++..+ .+++++ +.|+.|.....-+..+...+...-+. +....++..+.-++..+
T Consensus 782 ~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~ 861 (1023)
T 4hat_C 782 TVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN 861 (1023)
T ss_dssp HHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 88888886532 2222221 223433 47999999888888887776442221 13355777777788899
Q ss_pred CHHHHHHHHHHHHHHHHHhCh------------hhHHHHHHHHHHhcCCCc
Q 000143 1978 ILEVRESAGLAFSTLFKSAGM------------QAIDEIVPTLLHALEDDQ 2016 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~------------~~~~~ilp~Ll~~L~~~~ 2016 (2058)
+++|-+.+...+-.+.+++.. .+.-.++..++..+.|..
T Consensus 862 ~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 862 NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 999999988888777654432 123345555666666643
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.56 E-value=4e-12 Score=169.58 Aligned_cols=476 Identities=12% Similarity=0.059 Sum_probs=305.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
...+.+.+.++ +...|..+..++..++ ... ......++..+.+.+.|+++.+|..|..+++.+. .++..+.+
T Consensus 72 ~~~vik~~~s~-~~~~Krl~Yl~~~~~~---~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l 143 (618)
T 1w63_A 72 QLECLKLIASQ-KFTDKRIGYLGAMLLL---DER-QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDL 143 (618)
T ss_dssp HHHHHHHHHSS-SHHHHHHHHHHHHHHC---CCC-HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHh---CCC-cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHH
Confidence 33444556655 6777776655444333 211 1223457788888999999999999999998885 34445788
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHh
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIAS 1537 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~ 1537 (2058)
+|.+.+.+.+.++.+|+.|+.+++.+....|+.+. .+++.+..+++|.++.|+.+|+.+|..++..-.+ ..+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~ 219 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRK 219 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999999999999999998886543 5667777889999999999999999999864221 13456
Q ss_pred HHHHHHhccCC---------------CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhc------CCCHHHHHH
Q 000143 1538 LVPTLLMGLTD---------------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKK 1595 (2058)
Q Consensus 1538 lvp~Ll~~l~d---------------~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~------d~s~~vr~~ 1595 (2058)
++|.++..+.+ +++..+ ..++.++.. .. .+......+.+.+.+.+. +.+..+...
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l--~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL--GR-NDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH--TT-TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 67766654432 233333 344444431 11 111112334445544432 234567777
Q ss_pred HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHH
Q 000143 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2058)
Q Consensus 1596 A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R 1675 (2058)
++.++..+. .. .......++.+...+.++++++|..|..+++.++..-+ +.+.+..+.++..+. |++..+|
T Consensus 297 a~~~i~~l~----~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~~~~~~~~~i~~~l~-d~d~~Ir 367 (618)
T 1w63_A 297 TVLTIMDIK----SE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-NAVQRHRSTIVDCLK-DLDVSIK 367 (618)
T ss_dssp HHHHHHHSC----CC---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-HHHGGGHHHHHHGGG-SSCHHHH
T ss_pred HHHHHHhcC----CC---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHcc-CCChhHH
Confidence 777776542 21 11223467778888888999999999999999997543 334556667777777 5566689
Q ss_pred hhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
..+...+..++. ...++.+++.+...+.+.+..+|..++.+++.++..+...+..|++. +++.+.+....++.
T Consensus 368 ~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~----ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 368 RRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDT----IMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHH----HHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHH----HHHHHHhccchhHH
Confidence 998888877654 22356788888888888999999999999999999887766666554 44555544455666
Q ss_pred HHHHHHHHHHHHhcccchhchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCC--CcchHHHHH
Q 000143 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE--GASTEAHGR 1831 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~~l~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~--~~~~e~~~~ 1831 (2058)
.+...+..++..+.+- -...++.+.+.+.+ .+......++.++|++...+.... .++++ .......
T Consensus 441 ~~~~~l~~ii~~~p~l-~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~-------~~~~~~~~~~~~~~-- 510 (618)
T 1w63_A 441 DAVPNLIQLITNSVEM-HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQ-------CEEEEPIQVTEDEV-- 510 (618)
T ss_dssp SHHHHHHHHHHHSCST-HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCC-------CSSSCCCCCCHHHH--
T ss_pred HHHHHHHHHHhcChhH-HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccc-------cccccccCCCHHHH--
Confidence 6777777777665421 22244455544442 234555678999999854332100 00000 0001111
Q ss_pred HHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~ 1911 (2058)
.+.+..+.... ..+..+|..++..+..+....|.. . +.+...+-.+..+.+.++|+-|...+.-
T Consensus 511 -----------~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~---~~l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 511 -----------LDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-V---NRIKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp -----------HHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H---HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-H---HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11222222111 456789998888887777666532 2 3333334445678889999988877654
Q ss_pred H
Q 000143 1912 L 1912 (2058)
Q Consensus 1912 L 1912 (2058)
+
T Consensus 575 l 575 (618)
T 1w63_A 575 F 575 (618)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1e-13 Score=162.55 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=165.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cccchhchHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~l~~~~il~~L~~~l~-~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
+++.+ .+.+|..|++|+.+|..++++.+. ..-....+++.+...+. +. +..+|.+|+.+++.++..+|..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 567899999999999999987432 11112378888988885 65 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC-hh-hHhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~-p~-~l~~~L 1497 (2058)
.++|.++..++|.++.||.+|..++..++...+ ++.++|.+...+.+++|++|..++..++.++... |+ ...+++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999987654 5788999999999999999999999999977665 55 367899
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
+.++|.+.++++|+++.||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998865444433
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.8e-13 Score=160.03 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=168.9
Q ss_pred hcCCCHHHHHHHHHHHHH-HHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hhHHH
Q 000143 1347 MKSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQ 1420 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~-l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~-p~l~~ 1420 (2058)
..+.+|..|++|...|.. ++.+...- ......++..|.+.+.++.|..+|..|+.+++.++++++ ..|. +|...
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 356789999999999999 88653211 111236788888899544599999999999999999999 8899 99999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---h-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh---hhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p---~~l 1493 (2058)
++|.++..++|..+.||+++..++..++...++. . ++.+++.++..+++++|++|.+++..|+.++...+ ..+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 9999999999999999999999999999987542 2 56889999999999999999999999999998877 678
Q ss_pred hhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1494 ~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
.+++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.+
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8999 999999999999999999999999999999999986665555543
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.53 E-value=5.1e-12 Score=165.02 Aligned_cols=377 Identities=14% Similarity=0.126 Sum_probs=272.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhHhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2058)
++-+++.+..+++.++..|..+++.+...-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566778888999999999999988643222 222 3579999999974 55889999999999999877765333
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChh------HHHHHHHHHhcc
Q 000143 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTT 1564 (2058)
Q Consensus 1496 ~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~------vr~al~~L~~~~ 1564 (2058)
.. ...+|.|+.+|.++++.||..|+++|+.++....+ ..+ ...++.++..+..++.. .|.+..++....
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 25899999999999999999999999999864221 111 35678888888776532 234444444311
Q ss_pred c--cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHHH
Q 000143 1565 F--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2058)
Q Consensus 1565 f--~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a~ 1640 (2058)
. ...........++|.|.+.+.+.+.+++..++.++.+++.. . .+... .-..++|.|..++.++++.++..++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--h-hhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 1 11112223456889999999999999999999999998752 2 11111 1235789999999999999999999
Q ss_pred HHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H--HHHhhHHHHHhhccCChhH
Q 000143 1641 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASV 1712 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~--l~~llp~Ll~~l~~~~~~v 1712 (2058)
.+++.++..-... .-...++.|...|.+ .+..+|..++++|+.++...... . -..++|.++..+.+.+..+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9999987532221 113466777777764 55668999999999987543221 1 1458899999999999999
Q ss_pred HHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----c----hh--chHHhH
Q 000143 1713 RDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LP--LLLPAV 1780 (2058)
Q Consensus 1713 R~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~----l~--~llp~L 1780 (2058)
|..+++++.+++.....+...|+ ..++|+|+..|...++.++..+++++..++...... . +. ..+..|
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 99999999999876544433444 347899999999999999999999999887543211 0 11 134566
Q ss_pred hhhcCCCCHHHHHHHHHHHHHH
Q 000143 1781 EDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1781 ~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+....+++..|+..|..++...
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 7777889999999999888776
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.51 E-value=1.3e-11 Score=162.23 Aligned_cols=378 Identities=14% Similarity=0.126 Sum_probs=273.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
.++.++..+..+++..+..|..++..+...-.. +.+ ..++|.|++.|. +++...+..|+.+|+.++.+.+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456677788888999999999988887643222 122 468999999997 45688999999999999988766533
Q ss_pred hh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChh------HHHHHHHHHhc
Q 000143 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 1563 (2058)
Q Consensus 1495 ~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~------vr~al~~L~~~ 1563 (2058)
.. -...+|.|+.++.++++.||..|+++|+.++..-.+ ..+ ...++.|+..+.+++.. .|.+..++...
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 22 236899999999999999999999999999864211 111 35678888888876532 23344444331
Q ss_pred c-c-cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHH
Q 000143 1564 T-F-VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVA 1639 (2058)
Q Consensus 1564 ~-f-~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a 1639 (2058)
. . ...........++|.|.+.+.+.+.+++..++.++.+++.. . .+... .-..++|.|..++.++++.++..+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--h-hhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 1 1 11112223456889999999999999999999999998762 2 22111 123578999999999999999999
Q ss_pred HHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H-H-HHhhHHHHHhhccCChh
Q 000143 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRAS 1711 (2058)
Q Consensus 1640 ~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~Ll~~l~~~~~~ 1711 (2058)
+.+++.++..-... .-...++.|...|.+ .+..+|..++++|+.++.+-... . . ..++|.++..+.+.+..
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99999997532211 123577778888874 55668999999999987543221 1 1 35889999999999999
Q ss_pred HHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----c----hh--chHHh
Q 000143 1712 VRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LP--LLLPA 1779 (2058)
Q Consensus 1712 vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~----l~--~llp~ 1779 (2058)
+|..+++++++++.....+-..|+ ..++|+|+..|...++.++..+++++..++...... . +. ..+..
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 999999999999876544433444 247999999999999999999999998887543211 0 11 13556
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
|+....+++..|+..|..++...
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 77777889999999999888876
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.48 E-value=1.3e-11 Score=164.05 Aligned_cols=480 Identities=13% Similarity=0.100 Sum_probs=302.6
Q ss_pred hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1453 ~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --+++.+.+-++|+++.+|..|+.+|+.+.. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~ 141 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---R 141 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H
Confidence 44555677888899999999999999999998887776543 3566778888999999999999999999854 3
Q ss_pred hhHHhHHHHHHhcc--CCCChhHH-HHHHHHHhccccccCChhhHh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l--~d~~~~vr-~al~~L~~~~f~~~~~~~~l~--~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
...+.++|.+.+.+ .|+++++| .|+-++...- ..+..... .+++.+...+.|+++.|+..|..++..++..
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~---~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~- 217 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY---RTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK- 217 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH---HHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH---HhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-
Confidence 35588999999999 99999998 4544444310 01111122 5788889999999999999999999988873
Q ss_pred CCCCchhhhHhhhhHHHHHhhCCC-------------CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCC-
Q 000143 1608 TEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN- 1670 (2058)
Q Consensus 1608 ~~~~~l~pyl~~ll~~L~~~l~d~-------------~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~- 1670 (2058)
++..+.++.+.++..|.+++.+. ++-.+-...+.++.++..-.++ .+.++++.++..+...+
T Consensus 218 -~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 218 -NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK 296 (621)
T ss_dssp -CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred -ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcc
Confidence 44556667777777777665432 4566766666666554211111 22234444443322111
Q ss_pred -------C--hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1671 -------S--NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1671 -------~--~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+ ..+...++.++-.+. -..+........+...+.++++.+|-.++..+..++...+. .+++....+.
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~ 372 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIET 372 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHH
T ss_pred cccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHH
Confidence 0 012222222222211 11224556677777778888999999999999998876542 1233444566
Q ss_pred HHHhcc-CCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCC
Q 000143 1742 ILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2058)
Q Consensus 1742 Ll~~L~-d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e 1820 (2058)
++..+. |++..||..+++.+..++ .+..++.++..|.+.+.+.+..+|..++..++.+..+....
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~----------- 438 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD----------- 438 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-----------
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-----------
Confidence 677788 999999998888876664 33456778888888888888899999999999886443210
Q ss_pred CCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC--
Q 000143 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-- 1898 (2058)
Q Consensus 1821 ~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-- 1898 (2058)
.+.....+.+.+. ...+ .+...+...+..++.+.+..-...+ ..+...+.++.
T Consensus 439 -----~~~~v~~Ll~ll~-------------~~~~---~v~~ev~~~l~~ii~~~~~~~~~~~----~~l~~~l~~~~~~ 493 (621)
T 2vgl_A 439 -----YTWYVDTILNLIR-------------IAGD---YVSEEVWYRVIQIVINRDDVQGYAA----KTVFEALQAPACH 493 (621)
T ss_dssp -----THHHHHHHHHHHH-------------HHGG---GSCSHHHHHHHHHHGGGCSCHHHHH----HHHHHHHTSSSCC
T ss_pred -----HHHHHHHHHHHHH-------------hhcc---cchHHHHHHHHHHHhCChhHHHHHH----HHHHHHHcCccch
Confidence 1112222222221 1111 1112222333334433332111122 22334455543
Q ss_pred HHHHHHHHHHHHHHHHHhCcc--hh-hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc
Q 000143 1899 SERRQVAGRALGELVRKLGER--VL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~--~l-~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~ 1975 (2058)
..+-..++..+|+.+...... .. .+++..+.+.+.+.++.+|..+..++..+....+ + .. +.+...+.....
T Consensus 494 ~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~~---~~i~~~l~~~~~ 568 (621)
T 2vgl_A 494 ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-VK---ATIQDVLRSDSQ 568 (621)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-GH---HHHHHHHSSHHH
T ss_pred HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-HH---HHHHHHHHHHhc
Confidence 345566779999987765432 11 2556667666777889999998888887766542 2 11 334444444555
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 000143 1976 --DSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1976 --D~d~~VR~~Aa~a~~~l 1992 (2058)
|.|++||+.|..-..-+
T Consensus 569 ~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 569 LKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HSCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 99999999998765554
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=4.9e-13 Score=156.82 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=162.3
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
..+-+.+.+.+.+.+|+.|++|+..|+.++.++++.....+..+++.+...+. |++..||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445688888999999999999999999998766555566789999999995 99999999999999999998875
Q ss_pred hhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+++..++|.++..+.|++..+|+ +..++... ... ..+..++|.+...++++++.+|..++.+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~--~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAI--YAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH--HTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 67899999999999999999984 33333221 111 1256789999999999999999999999998765422212
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp 1660 (2058)
.+.+|++.++|.+...+.|++++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999864444443
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.47 E-value=2e-11 Score=159.39 Aligned_cols=387 Identities=15% Similarity=0.129 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~ 1415 (2058)
++.+++.+. +++...+..|.+.+..++..-. .+.+....++|.|.+.+.+.+++..+..|..+++.|+.+-.+.-.
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344444443 3346666666666666554221 112223468899999998776889999999999999854332222
Q ss_pred hhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh-----HHHHHHHHHHHHH
Q 000143 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2058)
Q Consensus 1416 p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-----~~R~~a~~~Lg~l 1485 (2058)
..+. ..+|.++..+.++++.||+.|.++|+.++...+.. .+ ...++.++..+.+.+. .....++.++..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2222 47899999999999999999999999998654332 12 3468888888876543 3456678888888
Q ss_pred HhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1486 AYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1486 a~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
+.+.. ..-......++|.|..++.+.++.|+..|+++|..++..-. +.. ..+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i~--- 271 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV--- 271 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHHH---
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHHH---
Confidence 86532 22223446789999999999999999999999999875311 100 0000
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
...++|.+...+.+.+..++..++.++++++.. +...... .-...++.|..++.+++..+|..++.+|
T Consensus 272 ---------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ---------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456667777777888888888899988752 2111111 1124677777888899999999999999
Q ss_pred HHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHH
Q 000143 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2058)
Q Consensus 1644 g~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~ 1714 (2058)
+.++..-... .-..++|.|++.+.+ .+..+|..++++|+.++.....+.. ...++.+...+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997533221 123688999998885 4566899999999998876544432 35788999999999999999
Q ss_pred HHHHHHHHhHHHh---ch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1715 GYLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1715 ~al~~l~~la~~~---g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.++.++..+.... |. .+..++.. .+..+..+..+++++|++.|...+...
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999998887643 21 22222322 355666667788999988877665543
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.45 E-value=8.1e-11 Score=154.61 Aligned_cols=386 Identities=14% Similarity=0.121 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000143 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2058)
Q Consensus 1340 ~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~---~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p 1416 (2058)
+.+++.+. +++...+..|...+..++..-.. +.+....++|.|.+.+....++..+..|..++..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444333 33455566666666555432111 112234788999999977668899999999999998643321122
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh-----HHHHHHHHHHHHHH
Q 000143 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1417 ~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-----~~R~~a~~~Lg~la 1486 (2058)
.+. ..+|.++..+.++++.||+.|.++|+.++...+.. .+ ...++.++..+.+.+. .....++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 47899999999999999999999999997543322 12 3468889888876543 34566788888887
Q ss_pred hhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000143 1487 YCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1487 ~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f 1565 (2058)
.+... .-......++|.|..++.+.++.|+..|+++|..++..-. +.. ..+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHHH----
Confidence 65422 2223446789999999999999999999999999876321 100 0000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
...++|.+...+.+.+..++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|+
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 012456667777778888888899999988752 2111111 12357788899999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
.++..-... .-..++|.++..+.+ .+..+|..++++|+.++.....+.. ..+++.+...+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998632221 123588999998885 4566899999999998876544432 347889999999999999999
Q ss_pred HHHHHHHhHHHh---ch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1716 YLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1716 al~~l~~la~~~---g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
++.++..+.... |. .+..++.. .+..+..+..+++++|++.|...+...
T Consensus 440 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 440 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999998887643 21 22222221 245555666788999998887666543
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.38 E-value=2.7e-09 Score=141.65 Aligned_cols=498 Identities=14% Similarity=0.070 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~ 1430 (2058)
+...|+.+..-+-.+. ..|.+.- .....+.+.+.++ +...|..+..++..+++.- ...+.-++..+.+.+.
T Consensus 51 ~~~~k~~~l~Kli~l~-~~G~d~s---~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIF-LLGHDID---FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHH-HHSCCCC---SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HcCCCCc---hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence 3444554444333322 2454332 2344455567766 7888887777666555322 2334556778888999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhc--cCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L--~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
|+++.+|-.|..+++.+. .++-.+.++|.+.+.+ .|.++.+|+.|+.++..+....|+.+.. +.+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHh
Confidence 999999999999998873 3455588899999999 8999999999999999999988866542 37788889999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCC-------------ChhHH-HHHHHHHhccccccCCh
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDP-------------NDHTK-YSLDILLQTTFVNTVDA 1571 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~-------------~~~vr-~al~~L~~~~f~~~~~~ 1571 (2058)
+|+++.|+.+|+.++..++..-+. +.++.++..|.+.+.+. ++-.+ ..++.+.. +....+.
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~--~~~~~d~ 274 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--YPPPEDP 274 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--SSSCSSH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--hCCCCCH
Confidence 999999999999999999875322 12333444443333211 23333 34555443 2221122
Q ss_pred hhHhhHHHHHHHhh---cC---------CC--HHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHH
Q 000143 1572 PSLALLVPIVHRGL---RE---------RS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2058)
Q Consensus 1572 ~~l~~llp~L~~~L---~d---------~s--~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~ 1637 (2058)
.....+...+.+.+ .+ .+ ..+..+++.++-.+. . ..++....+..|...+.++++++|.
T Consensus 275 ~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L~~~~~niry 347 (621)
T 2vgl_A 275 AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFLQHRETNLRY 347 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHSSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHhcCCCcchHH
Confidence 22222333333332 11 12 255555555554432 1 2345667788888888889999999
Q ss_pred HHHHHHHHHHHhhc-ccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHH
Q 000143 1638 VAARAIGSLIRGMG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1638 ~a~~aLg~l~~~lg-~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.+..++..++...+ .+.+....+.++..|+.+++..+|..+...+..++ ..+.++.++..+...+.+.+...|..+
T Consensus 348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~ 424 (621)
T 2vgl_A 348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEI 424 (621)
T ss_dssp HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986543 13455666777777774555668887777766554 344678899999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCC--HHHHHH
Q 000143 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN--WRIRQS 1794 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~--~~vR~s 1794 (2058)
+..++.++..+...+.-|++.++..+-. ....+...+...+..++..... .-...+..+.+.+.++. ..+-..
T Consensus 425 v~~I~~la~k~~~~~~~~v~~Ll~ll~~----~~~~v~~ev~~~l~~ii~~~~~-~~~~~~~~l~~~l~~~~~~~~li~~ 499 (621)
T 2vgl_A 425 VLKVAILAEKYAVDYTWYVDTILNLIRI----AGDYVSEEVWYRVIQIVINRDD-VQGYAAKTVFEALQAPACHENLVKV 499 (621)
T ss_dssp HHHHHHHHHHHCSSTHHHHHHHHHHHHH----HGGGSCSHHHHHHHHHHGGGCS-CHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh----hcccchHHHHHHHHHHHhCChh-HHHHHHHHHHHHHcCccchHHHHHH
Confidence 9999999988777666666655555433 2223444445555555543321 11123334444444432 344455
Q ss_pred HHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2058)
Q Consensus 1795 av~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~ 1874 (2058)
++.++|+....+.. .++... .+++..++....+.+..||..++..+..+...
T Consensus 500 ~~wilGEy~~~~~~------------~~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 500 GGYILGEFGNLIAG------------DPRSSP----------------LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHHHTHHHHS------------STTSCH----------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHhcc------------cCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 56777776322110 000000 02233444445567788998888777777665
Q ss_pred ChhhHHHhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 000143 1875 TPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1875 ~~~~l~~~l~~L~~~l~~~L~--~~~~~~R~~A~~~Lg~ 1911 (2058)
.|.. .+.+...+-.+.. +.+.++|+-|.+...-
T Consensus 552 ~p~~----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 552 FPEV----KATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp CGGG----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 5532 2222222223334 7888888877766543
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1e-11 Score=145.24 Aligned_cols=199 Identities=10% Similarity=0.204 Sum_probs=161.7
Q ss_pred HHHHhccCCChHHHHHHHHHHHH-HHhhChhhH--hhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhcC----c-
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK----N- 1532 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~-la~~~p~~l--~~~L~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~----~- 1532 (2058)
.+.+.+.+++|..|++|+..|+. ++.++++.. ...+..++..+.+.+ +|+|..||..|+++++.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567789999999999999999 988777655 445568899999999 89999999999999999999887 2
Q ss_pred hhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~----al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+|...++|.++..+.|....+++ |+.++... ..... .+++..+++.+...+++.+|.+|..++.+++.++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 67889999999999999887763 44444431 11111 1236679999999999999999999999999988753
Q ss_pred CCC-CchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHH
Q 000143 1608 TEP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2058)
Q Consensus 1608 ~~~-~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L 1662 (2058)
+.. ..+.+|+ +.++|.+...+.|++++||..|..+++.++..+|++.+..+++.|
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 221 4577899 999999999999999999999999999999999987555555543
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.36 E-value=3e-11 Score=144.98 Aligned_cols=248 Identities=17% Similarity=0.121 Sum_probs=153.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
++.+.+.+.++ ++.+|..|+.+++.+.. ...++.+...+.|+++.||..|..+++.+.. ....+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 55666666665 77888887777766541 2466777777888888888888887776532 12234445
Q ss_pred HHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
++.+.+ .+.++++.+|..++.+||.+....+. +.+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555553 35677788888888888877654432 224567777777888888888888888877654 235
Q ss_pred HHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
+|.|...+.|++..+| .++.+++.... . -...+|.+...++|.++.+|..|+.+++.++ +
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~-------- 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKY---D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D-------- 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC---C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcc---C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C--------
Confidence 6667777777777776 45555543210 0 1235566666677777777777777766653 1
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHH
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa 1679 (2058)
+..++.|...+.|++ +|..++.+++.+.. +..+|.|.+.+.++.+...+..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 124555666666643 66777777766532 356666666665444443333333
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.32 E-value=1e-10 Score=140.30 Aligned_cols=251 Identities=14% Similarity=0.103 Sum_probs=191.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
.++.++..+.|+++.||..|..+++.+.. +..++.+...+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 46778888999999999999999987741 356788889999999999999999999875321 123456
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000143 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1501 ip~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
++.+. .+++|+++.||..++++|+.++.... .....+++.+...+.|++..+| .++.+++.... ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------HHHH
Confidence 66665 35789999999999999999985421 2345788999999999999998 67777775211 1267
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccch
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~l 1658 (2058)
|.+...++|.++.+|..|+..++.+.. + -+..++.+...+.|+++.||..++.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~---~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY---D-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC---C-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc---C-------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 888889999999999999999988742 1 1346788888999999999999999999875 2467
Q ss_pred HHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc-CChhHHHHHHHHH
Q 000143 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2058)
Q Consensus 1659 lp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~-~~~~vR~~al~~l 1720 (2058)
+|.|...+.++ + +|..++.+|+.+ |. +..+|.+...+.+ +++.++..++..+
T Consensus 225 ~~~L~~~l~d~-~--vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKN-T--VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSS-S--CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCc-c--HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 88888888742 2 788888888875 33 3677778777765 3556655555444
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.31 E-value=1.2e-07 Score=125.79 Aligned_cols=362 Identities=16% Similarity=0.157 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC---CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~---d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
.+..|+..+|.+-. ++.++ .+..|...+. ..++.+|..|+-++|.+..+.+. +.+..|.+.|.+
T Consensus 374 ~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~~ 440 (963)
T 4ady_A 374 AKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHcC
Confidence 45666677776654 33222 2333333333 56789999999999999877664 356666666664
Q ss_pred CC-------ChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1669 DN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1669 d~-------~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+. ...+|.+++.+||.+..+.|.+ ++++.|...+.+.+..+|..+..++|-+-..-|.. ..+..++..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e---ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~ 515 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSANI---EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTY 515 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHH
Confidence 43 2568889999999876666554 45555566666667777877777777654333432 233333333
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc-CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCC
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e 1820 (2058)
+. .+.++.+|..+.-+++.+. ++.. ...+.+.+.+ .+.++-+|..++-.+|-- + +|...
T Consensus 516 ~~---e~~~e~vrR~aalgLGll~--~g~~---e~~~~li~~L~~~~dp~vRygaa~alglA-y--aGTGn--------- 575 (963)
T 4ady_A 516 SQ---ETQHGNITRGLAVGLALIN--YGRQ---ELADDLITKMLASDESLLRYGGAFTIALA-Y--AGTGN--------- 575 (963)
T ss_dssp HH---HCSCHHHHHHHHHHHHHHT--TTCG---GGGHHHHHHHHHCSCHHHHHHHHHHHHHH-T--TTSCC---------
T ss_pred Hh---ccCcHHHHHHHHHHHHhhh--CCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cCCCC---------
Confidence 33 4667889999888888663 3222 1233333333 357899999988777642 1 11100
Q ss_pred CCCcchHHHHHHHHHHhChhhHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCH
Q 000143 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2058)
Q Consensus 1821 ~~~~~~e~~~~~l~~~Lg~~~~~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~ 1899 (2058)
. ..++. |..+..|.+..||++|+..++.+....+ +..+.++..+ ..+.++
T Consensus 576 ------~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----e~v~rlv~~L---~~~~d~ 626 (963)
T 4ady_A 576 ------N----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----TTVPRIVQLL---SKSHNA 626 (963)
T ss_dssp ------H----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----SSHHHHTTTG---GGCSCH
T ss_pred ------H----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----HHHHHHHHHH---HhcCCH
Confidence 0 11121 1223457778899999888887654433 3344444433 457899
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC--C
Q 000143 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D--~ 1977 (2058)
.+|..|+.++|.++..-+ .+.++..|....+|++..||++++.+||.+..+... ...|.+.+++..+.+...| .
T Consensus 627 ~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-a~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-KLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-TTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHHHHHHHHhcccc
Confidence 999999999998863222 356777888888999999999999999977665533 3345566777777777766 5
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhhc
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~--~~~~~al~aL~~i~~~~ 2032 (2058)
|+.+|-.|.-|.|-+. .|...+. ++...++ ..+..++-||..+....
T Consensus 703 d~~~~fga~iAqGll~--aG~~n~t------is~~~s~~~~~~~~a~~Gl~~f~q~w 751 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN--AGGRNVT------IQLENADTGTLDTKSVVGLVMFSQFW 751 (963)
T ss_dssp CHHHHHHHHHHHHHHT--TGGGTEE------ECSBCTTTCCBCHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHh--cCCCceE------EEeeeccCCCCCHHHHHHHHHHHHHH
Confidence 7889999998888875 4443110 0111121 13567777777666544
No 58
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.29 E-value=8e-08 Score=127.56 Aligned_cols=307 Identities=11% Similarity=0.051 Sum_probs=205.1
Q ss_pred HHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC--------hHHHHHHHHHHHHHHhhCh
Q 000143 1422 LPLLLVAFS---DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA--------WRTKQSSVQLLGAMAYCAP 1490 (2058)
Q Consensus 1422 lp~Ll~~l~---D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~--------~~~R~~a~~~Lg~la~~~p 1490 (2058)
+..+-+.+. .+++.+|..|+-+++.+......+ ++..|.+.+.+.+ ..+|.+|+..||-+..+..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444444554 457889999999999886544432 3444555554333 6789999999998765543
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT 1568 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~ 1568 (2058)
. +++++.|.+.+.|.+..+|..|+.+||.+.-..++. .++.++..+.. +.++.+| .+.-.|+-+.+...
T Consensus 470 ~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 470 N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCG
T ss_pred C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCCh
Confidence 2 256667777888878888999999999875444444 44666666554 4445554 44445543222221
Q ss_pred CChhhHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH-HHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1569 VDAPSLALLVPIVHR-GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1569 ~~~~~l~~llp~L~~-~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
. ..+.+.+ ...+.++.+|..++-+++.-+...++ ...++ .|..+..|.+..||..|+.+||.+
T Consensus 541 ---e----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--------~~aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 541 ---E----LADDLITKMLASDESLLRYGGAFTIALAYAGTGN--------NSAVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp ---G----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 1 2233333 33568899999988777754432222 12333 333344588899999999999987
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHH
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~ 1726 (2058)
. +|+ ++.+|.+++.|..+.++.+|.+++.++|.+..+-|. .+++..|.....|++..||.+++.+++.+...
T Consensus 606 ~--~g~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 606 L--LRD---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp T--SSS---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred c--cCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 5 343 256777888777777888999999999988766554 35666666777899999999999999988765
Q ss_pred hchhHHHhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Q 000143 1727 LGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~d--~~~~VR~~a~~al~~l 1764 (2058)
..+...|.+..++..+.+...| +++..|-.+.-|.+.+
T Consensus 678 tnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 5554445677777778887765 5677887777666654
No 59
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.28 E-value=3.2e-07 Score=126.72 Aligned_cols=371 Identities=13% Similarity=0.158 Sum_probs=220.0
Q ss_pred HhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhcc----cCccchHHHHHhhcccCC----ChHHHhhHHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDN----SNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1617 l~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~----~~~~~llp~L~~~L~~d~----~~~~R~~aa~~L~~i~ 1686 (2058)
...+++.+.+.+. ..+|..++++.-|+|+++..+.+ .+++.+++.|+....... ...++......+|...
T Consensus 475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence 3345666665544 35799999999999999877654 267788888876654322 2223444445677666
Q ss_pred HHhc--hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH--------HHhHHHHHHHHHHhccCCCHHHHHH
Q 000143 1687 AALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--------QNYLQQVLPAILDGLADENESVRDA 1756 (2058)
Q Consensus 1687 ~~~g--~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f--------~pyl~~ilp~Ll~~L~d~~~~VR~~ 1756 (2058)
+.+. .++++.++..+++.+.++++.|+++++.+|..++...+..| .||++.++..+.....+-.+.-...
T Consensus 555 ~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 555 RFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5543 44789999999999999999999999999999999888766 4688888888777777666666667
Q ss_pred HHHHHHHHHHHhcccc-----hhchHHhHhhhcCCCCHHHHH-------------HHHHHHHHHHHHhhCCcccccccCC
Q 000143 1757 ALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQ-------------SSVELLGDLLFKVAGTSGKALLEGG 1818 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~-----l~~llp~L~~~l~d~~~~vR~-------------sav~ll~~Ll~~~~g~~~k~~~~~~ 1818 (2058)
..+|++.++...+... ++.++|..... |.--. ..+.-+..++.
T Consensus 635 lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~-----w~~l~~~~~~~~~~~~d~~~i~~l~~il~-------------- 695 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQV-----WDSIIQQATKNVDILKDPETVKQLGSILK-------------- 695 (1073)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHH-----HHHHHHHHHHCGGGGGCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH-----HHHHHHHhhcCchhccChHHHHHHHHHHh--------------
Confidence 7888888887765432 22222222111 11000 00111111111
Q ss_pred CCCCCcchHHHHHHHHHHhChhhHHH---HHH---HHHHhh--------------cCCCH------HHHHHHHHHHHHHH
Q 000143 1819 SDDEGASTEAHGRAIIEVLGRDKRNE---VLA---ALYMVR--------------SDVSL------SVRQAALHVWKTIV 1872 (2058)
Q Consensus 1819 ~e~~~~~~e~~~~~l~~~Lg~~~~~~---vL~---~L~~~~--------------~D~~~------~VR~aA~~~l~~lv 1872 (2058)
....+...+|..+... +.. .+|... ..... .+|...+..+...+
T Consensus 696 ----------~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i 765 (1073)
T 3gjx_A 696 ----------TNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWV 765 (1073)
T ss_dssp ----------HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334445443321 111 111110 01112 24444455555555
Q ss_pred hhCh---hhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHhCcchh---hchHHHH----hhhcC---CCChh
Q 000143 1873 ANTP---KTLKEIMPVLMNTLISSLASSSSERR-QVAGRALGELVRKLGERVL---PSIIPIL----SRGLK---DPSAS 1938 (2058)
Q Consensus 1873 ~~~~---~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg~L~~~lg~~~l---~~llp~L----~~~l~---d~~~~ 1938 (2058)
...+ .....++|.+++.++.--....+..| .....++..++.++|.... +.++..+ .++++ .+.|+
T Consensus 766 ~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe 845 (1073)
T 3gjx_A 766 SRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPE 845 (1073)
T ss_dssp TTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred hcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcH
Confidence 4332 12345667777666653333222223 2356778888888887543 3333222 22343 34699
Q ss_pred HHHHHHHHHHHHHHhhChhhhH---hHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh----------hhHHHHH
Q 000143 1939 RRQGVCIGLSEVMASAGKSQLL---SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----------QAIDEIV 2005 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~---~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~----------~~~~~il 2005 (2058)
.|.....-+..+...+-..-+. +....++..+.-++...+++|-+.+...+-.+.+++.. .+.-.++
T Consensus 846 ~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~ 925 (1073)
T 3gjx_A 846 HRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDIL 925 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 9999888788777765332211 23356777777788899999999998888888766542 1333556
Q ss_pred HHHHHhcCCCc
Q 000143 2006 PTLLHALEDDQ 2016 (2058)
Q Consensus 2006 p~Ll~~L~~~~ 2016 (2058)
..++..+.|..
T Consensus 926 ~~i~~v~td~~ 936 (1073)
T 3gjx_A 926 QHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHHHTCTT
T ss_pred HHHHHHHhCch
Confidence 66666677654
No 60
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.21 E-value=1.2e-08 Score=145.88 Aligned_cols=522 Identities=14% Similarity=0.111 Sum_probs=284.1
Q ss_pred HHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC
Q 000143 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2058)
Q Consensus 1058 ~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~ 1127 (2058)
++.+++..+.+| ++++|.+|.+.|++.... +........+. ...+.+..+|..|.. .|...+.+
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 577788888888 778899999999876411 11112222222 234556778877754 36544333
Q ss_pred CCCCH-HhHHHHhcC-------CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHH
Q 000143 1128 FGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2058)
Q Consensus 1128 ~~~~~-~~ll~~l~~-------~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~ 1198 (2058)
....+ ..+++.+.+ ....||+..+++++.++. .+|+.|++++..|.+.... +...+.++.
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~L 154 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELVM 154 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHHH
Confidence 33345 667776642 468999999999999986 4788898888888876531 123577788
Q ss_pred HHHHHhhhh-hCCCC----------------hHHHHHHHHHhhccC-------------------CCHHHHHHHHHHHHH
Q 000143 1199 LALHSAADV-LRTKD----------------LPVIMTFLISRALAD-------------------TNADVRGRMLNAGIM 1242 (2058)
Q Consensus 1199 ~al~~l~~~-~~~~~----------------~~~l~~~Li~~~L~d-------------------~~~~VR~~al~a~~~ 1242 (2058)
.+|..+++- ...+. .+.++..+. ..+.+ .+..++..++++...
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~-~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLL-NTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHH-HHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 888887653 22111 112323221 11211 112233333333322
Q ss_pred HHHhhCccch----hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHH
Q 000143 1243 IIDKHGRDNV----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQR 1318 (2058)
Q Consensus 1243 ~i~~~g~~~~----~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~ 1318 (2058)
++.--+...+ ..+++.+...+.+ . .+|..|+++|..++..-.+ + .. ...++..+.
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~~------~--~lr~~A~ecL~~i~s~~~~--~--~~-~~~li~~l~-------- 292 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLNE------Q--ELQLGAAECLLIAVSRKGK--L--ED-RKPLMVLFG-------- 292 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGGC------T--TTHHHHHHHHHHHHTCCSC--H--HH-HGGGGGGGS--------
T ss_pred HHhccCHHHHHhccchHHHHHHHHcCC------H--HHHHHHHHHHHHHHhCCCC--h--hh-HHHHHHHHh--------
Confidence 2211111010 1255555444332 1 3566677777766642110 0 00 000111110
Q ss_pred HHHHhhHhhHhhcccchHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHH-------hhh----CccccchhchH
Q 000143 1319 AVSSCLSPLMQSMQDEAPTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVV-------KGF----GISSLKKYGIA 1380 (2058)
Q Consensus 1319 av~~~L~~l~~~~~~~~~~~v~~Ll~~L~-------~~~~~~vR~~Aa~~L~~l~-------~~~----g~~~l~~~~il 1380 (2058)
...+..+++... .++++..++.-+..+..+. ... ....+ ..++
T Consensus 293 -----------------~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l 353 (1204)
T 3a6p_A 293 -----------------DVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYL 353 (1204)
T ss_dssp -----------------HHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHH
T ss_pred -----------------hHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHH
Confidence 011112222211 0011222222222222221 110 11111 2677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHH---HHHcCC-----------------CC---
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSD-----------------QV--- 1433 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~l----g~~~~p~l~~llp~L---l~~l~D-----------------~~--- 1433 (2058)
+.+.....++ +..+-..++..+..+.+.. ...+.+++.++++.+ +..+.- .+
T Consensus 354 ~~lL~~t~~~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~ 432 (1204)
T 3a6p_A 354 ESFLAFTTHP-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDF 432 (1204)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHH
T ss_pred HHHHHHHhCc-cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHH
Confidence 8888777765 5555555555555454432 134667888888888 333211 01
Q ss_pred ----HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-------------------------CCChHHHHHHHHHHHH
Q 000143 1434 ----VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1434 ----~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-------------------------~~~~~~R~~a~~~Lg~ 1484 (2058)
...|....+.++.++...+..++..+.+.+.+.+. +..|....+....+++
T Consensus 433 ~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~lea 512 (1204)
T 3a6p_A 433 NAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLES 512 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHH
Confidence 13577777788888777666666555555544332 2346666777777777
Q ss_pred HHhhChhhH-hhhhh-hHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhcC-ch-hHHhHHHHHHhccCCCCh-hHHHH
Q 000143 1485 MAYCAPQQL-SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIK-NP-EIASLVPTLLMGLTDPND-HTKYS 1556 (2058)
Q Consensus 1485 la~~~p~~l-~~~L~-~Iip~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~-~~-~i~~lvp~Ll~~l~d~~~-~vr~a 1556 (2058)
+++++.... .++++ .++|.++..+ +..+|.+|..++.+++.++..+. +| ++..++..++..+.++.. ..+
T Consensus 513 v~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~-- 590 (1204)
T 3a6p_A 513 VITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK-- 590 (1204)
T ss_dssp HHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT--
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc--
Confidence 776653322 23333 2445555543 45689999999999999998765 22 455566655555433110 000
Q ss_pred HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCC---H
Q 000143 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---P 1633 (2058)
Q Consensus 1557 l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~---~ 1633 (2058)
. +. .+.+.++|..|+.++..+|.. -+..+.||++.+...+..++.... .
T Consensus 591 -------------~-~~------------~~~~k~vr~~a~~al~~L~~~--~~~~L~p~~~~i~~~~~~~l~~~~~l~~ 642 (1204)
T 3a6p_A 591 -------------A-PR------------TRAVRNVRRHACSSIIKMCRD--YPQLVLPNFDMLYNHVKQLLSNELLLTQ 642 (1204)
T ss_dssp -------------S-CC------------CHHHHHHHHHHHHHHHHHHHH--CHHHHGGGHHHHHHHHHHHHHSTTTSCH
T ss_pred -------------c-cc------------cHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhCcccccH
Confidence 0 00 001247889999999999984 345788999999999888876433 5
Q ss_pred HHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhccc
Q 000143 1634 EVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1634 ~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~ 1668 (2058)
.-+.....+++.++..+++. ++..+++.+++.+.+
T Consensus 643 ~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 643 MEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 55677788888887655443 466677777777653
No 61
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.15 E-value=3.3e-10 Score=135.89 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=181.7
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCHHhHHHH
Q 000143 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKA 1138 (2058)
Q Consensus 1059 l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~~~ll~~ 1138 (2058)
...|+..+.+|.|++|++|..+|+++.+..+.. .+.. ...+.|-.+|-+.--..+..| ++
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~--~~~N~DLAvRLLCVLALDRFG-----------DY 235 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ--IRVDSKLFSKIYEILVTDKFN-----------DF 235 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC--CCCCTTHHHHHHHHHHHBCCB-----------BC
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee--ccccHHHHHHHHHHHHhcccc-----------cc
Confidence 356788999999999999999999987544211 1111 111112233322222233322 34
Q ss_pred hcCC-CHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHHHH
Q 000143 1139 LSHS-NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217 (2058)
Q Consensus 1139 l~~~-~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~l~ 1217 (2058)
++|. .+.||+++||+|+.+ ..-|+.+ .++..|.. .+ ....|++|+|++.+++++...+.. .+.++
T Consensus 236 VSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~----~l------~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv 301 (800)
T 3oc3_A 236 VDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVG----FL------DSGDWQVQFSGLIALGYLKEFVED--KDGLC 301 (800)
T ss_dssp SSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTT----GG------GCSCHHHHHHHHHHHHHTGGGCCC--HHHHH
T ss_pred ccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHh----hc------CCCCeeehhhhHHHHHHHHHHHHH--HHHHH
Confidence 5544 679999999999999 6656552 34444432 11 136799999999999999555442 77888
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc
Q 000143 1218 TFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2058)
Q Consensus 1218 ~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~ 1297 (2058)
+.++ .||+|.+++||..+.+++..++ .++.++.++.+++.+|.+- ++-+ .....++.+|..++.+-.... .
T Consensus 302 ~aVL-~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L--DDLS--ASTgSVMdLLAkL~s~p~~a~-~ 372 (800)
T 3oc3_A 302 RKLV-SLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE--ELIS--VSKTSNLSLLTKIYRENPELS-I 372 (800)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC--CSCC--TTHHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHH-hhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh--cccc--hhhHHHHHHHHHHHcCCcccc-c
Confidence 8876 7999999999999998877766 4577899999999999863 2111 224567999999998643211 1
Q ss_pred hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 1363 (2058)
Q Consensus 1298 i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~ 1363 (2058)
.+.++|+|...|.++...||.++.+++..+. ....++.+++++.-+++..++..+.+.+.
T Consensus 373 dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 373 PPERLKDIFPCFTSPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2388999999999999999999999988876 45688889999888888999988777663
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.13 E-value=9.7e-10 Score=125.68 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=134.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.++..+.|+++.+|..|..+++.+.. +..+|.+.+.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 456777888899999999999988887632 3567888888899999999999999988752 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
.++.+...++|+++.||..|+++|+.++. ...++.|...+.|++..+| .++.+++.... ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHHH
Confidence 67788888999999999999999988864 2356777777788877776 56666654211 1245
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
|.+...++|.++.+|..++.+++.+.. +..++.|..++.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788777777776532 235666666677777778888777777766543
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=9.4e-10 Score=124.72 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=153.6
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
+.++-....+.++..++|+++.+|..|..+++.+.. ...++.+.+.+.++++.+|..++.+|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 344455778889999999999999999999987642 2467888899999999999999999998742
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~ 1572 (2058)
+..++.+...++|+++.||..|+++|+.++. ...++.+...+.|++..+| .++.+++...
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 2567888889999999999999999999864 2467778888899999888 5777776521
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
....++.+...++|.++.+|..|+.+++.+. + +..++.|..++.|+++.||..|..+|+.+.
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIG----G--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1236788888999999999999999998873 2 246777888888999999999999998754
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.05 E-value=1.6e-08 Score=118.62 Aligned_cols=237 Identities=19% Similarity=0.134 Sum_probs=175.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh--
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-- 1455 (2058)
.++.+.+.+.++ ++..|..|+.++..++..........+. ..+|.++..+.++++.+|..|..++..++...+...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 467777788776 6899999999999887654322222222 488999999999999999999999999975422211
Q ss_pred H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+ ...+|.++..+.+++..+|..++.+|+.++...++.... .-...+|.+.+.+.++++.+|..|+++|+.++...
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 357899999999999999999999999999765543221 11368999999999999999999999999997631
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
+... + .+. -...+|.+...+.+.++.+|..++.++++++. +++..
T Consensus 160 ~~~~-----------------~----~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~ 204 (252)
T 4hxt_A 160 DEAI-----------------K----AIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSA 204 (252)
T ss_dssp HHHH-----------------H----HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHH
T ss_pred HHHH-----------------H----HHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence 1110 0 000 01256677777777788899999999999875 22221
Q ss_pred hhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1613 l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.... -...++.+..++.++++.+|..|..+|+.++...+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 1357899999999999999999999999999765544
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.03 E-value=1.3e-08 Score=130.55 Aligned_cols=345 Identities=14% Similarity=0.093 Sum_probs=229.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-h-hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-h
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA-Q-GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-C 1496 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~-~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~ 1496 (2058)
+|.+...+..+++.++..|..++..++..-+. . .+ ...+|.+++.|.+++...+..|+.+|..++...++.-.. .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56677777788899999999999998743332 1 22 457999999999999999999999999999864432111 1
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhccCC--------CChhHHHHHHHHHhccc
Q 000143 1497 LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTD--------PNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1497 L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~--~i~~lvp~Ll~~l~d--------~~~~vr~al~~L~~~~f 1565 (2058)
-...+|.|+++|. +.++.++..|+++|..++..-... .+...+|.|+..+.. +....|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~----------- 152 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSR----------- 152 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-------------------
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhc-----------
Confidence 1367899999998 778999999999999999752111 123556666665521 110000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH---hhhhHHHHHhhCC------CCHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVD------PIPEVR 1636 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl---~~ll~~L~~~l~d------~~~~vR 1636 (2058)
...+..+.+.|+.++.+++.. +. ....+ +..+|.|..++.+ ++..+.
T Consensus 153 --------------------e~~~~~v~~~a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 208 (457)
T 1xm9_A 153 --------------------EVVDPEVFFNATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208 (457)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTH
T ss_pred --------------------ccccHHHHHHHHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHH
Confidence 002356677788888888752 21 12221 1456666666542 333445
Q ss_pred HHHHHHHHHHHHhh----------------------------------------------------ccc--CccchHHHH
Q 000143 1637 SVAARAIGSLIRGM----------------------------------------------------GEE--NFPDLVSWL 1662 (2058)
Q Consensus 1637 ~~a~~aLg~l~~~l----------------------------------------------------g~~--~~~~llp~L 1662 (2058)
+.+..++..++... |-+ ...+.++.|
T Consensus 209 e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 288 (457)
T 1xm9_A 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288 (457)
T ss_dssp HHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHH
T ss_pred HHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHH
Confidence 55555454442100 001 123467778
Q ss_pred HhhcccCCChHHHhhHHHHHHHHHHHhchh-------HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1663 LDALKSDNSNVERSGAAQGLSEVLAALGTV-------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1663 ~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-------~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+..|.+..+..++..++++|+.++.+-+.. .+ ...+|.+.+.+.+++..+|..+++++.+++..-... ..
T Consensus 289 ~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-~~ 367 (457)
T 1xm9_A 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RV 367 (457)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-HH
Confidence 888876666778889999999987643321 12 357899999999999999999999999997743221 12
Q ss_pred hHHHHHHHHHHhccCCC------HHHHHHHHHHHHHHHHHhccc--ch--hchHHhHhhhcCCC-CHHHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADEN------ESVRDAALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~------~~VR~~a~~al~~lv~~~~~~--~l--~~llp~L~~~l~d~-~~~vR~sav~ll~~L 1802 (2058)
.-...+|++++.|...+ +++...++.++..++..-... .+ ...+|.|.+.+.+. +.+++..|..++..+
T Consensus 368 i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 23568999999998753 357778888888776432211 11 12678888888888 899999999888765
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.02 E-value=5.6e-09 Score=119.29 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=57.4
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
..++.+++.+.++++.+|..++..|+.+.. +..+|.|.+.+.|+++.||..|+++|+.++. ..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------HH
Confidence 456777777788888888888888876542 3566777777888888888888888877753 13
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHH
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILL 1561 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~ 1561 (2058)
.++.+...+.|++..+| .++.+++
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555554 3344443
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.02 E-value=7.4e-09 Score=139.51 Aligned_cols=302 Identities=15% Similarity=0.271 Sum_probs=217.7
Q ss_pred HHhhHHHHHHHHHHHhchhH--HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch--hHHHhHHHHHHHHHHhccCC
Q 000143 1674 ERSGAAQGLSEVLAALGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1674 ~R~~aa~~L~~i~~~~g~~~--l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~--~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
.+..++..++.+..+-+... -..++..+...+.+.+.. ++++.++..++..+|. .+.||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45666777777665332211 025666666666665444 9999999999977754 77899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCC-CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHH
Q 000143 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2058)
Q Consensus 1750 ~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~-~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~ 1828 (2058)
...||.+|..|...++..+.+.++..++|.|...+.+. .|..+..++.+++.+...
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~----------------------- 164 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA----------------------- 164 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-----------------------
Confidence 99999999999999999999999989999999999655 699999999999998522
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000143 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~ 1907 (2058)
+...+.. ...++++.+..+..|....|..+|..++..++.-.. .++.+++|.|+ +++.+|+. .-+
T Consensus 165 ~~~~~~~-----~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~----~~~~~p~~-----~~~ 230 (986)
T 2iw3_A 165 AKDQVAL-----RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI----QCIADPTE-----VPE 230 (986)
T ss_dssp SHHHHHH-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH----HHHHCTTH-----HHH
T ss_pred hHHHHHH-----hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH----HHhcChhh-----hHH
Confidence 1111222 233667777888999999999999999998886443 56667766654 55677754 223
Q ss_pred HHHHHHHH-----hCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhhHhHHhhHHHHHHHHhc-CCCHH
Q 000143 1908 ALGELVRK-----LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALC-DSILE 1980 (2058)
Q Consensus 1908 ~Lg~L~~~-----lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~~~~ll~~L~~~L~-D~d~~ 1980 (2058)
|+..|... +....+.-+.|.|.++|+++...++..++.-+..|.+-. .+....+|++.++|.+.+... -++|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 33333221 112235678899999999887665554554466555443 345678999999999998664 57999
Q ss_pred HHHHHHHHHHHHHHHhCh-h-----------hHHHHHHHHHHhcCC
Q 000143 1981 VRESAGLAFSTLFKSAGM-Q-----------AIDEIVPTLLHALED 2014 (2058)
Q Consensus 1981 VR~~Aa~a~~~l~~~~g~-~-----------~~~~ilp~Ll~~L~~ 2014 (2058)
+|+.|..|++.+.+..+. . ....++..+-..|..
T Consensus 311 ~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp HHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 999999999999876543 1 133455556666654
No 68
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.01 E-value=7.4e-07 Score=116.25 Aligned_cols=479 Identities=11% Similarity=0.095 Sum_probs=287.5
Q ss_pred CCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHH
Q 000143 1310 NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM----KSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAAT 1382 (2058)
Q Consensus 1310 ~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~----~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~ 1382 (2058)
+...++|+..+.-.+..+....++.+.+.+...++.+. .+........+..++..+.--.. ...+......+.
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 34456777766666666666555566666666666444 11112223334444443322111 001111245666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hhHHhH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLV 1459 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~v~~l 1459 (2058)
+.+.+...++.....+++..+...|.. +....|+ ...++.|...+++ +.+|..|.-+|..+...... ..+..+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~L 335 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQL 335 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 666665554566666666655554431 2223333 3566777777765 57888887777777543322 235678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhCh--hhHhhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCc----
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN---- 1532 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p--~~l~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~---- 1532 (2058)
.+.+.+.+.+.+-..|..|++.|+.+..... +.+... +..++.|++.+.+ .+..+...+...+..+.....+
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 8888888888766668889999998875432 223332 5667888888875 5667888888888888775442
Q ss_pred -hhHHhHHHHHHhccC--CCChh-H--HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1533 -PEIASLVPTLLMGLT--DPNDH-T--KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1533 -~~i~~lvp~Ll~~l~--d~~~~-v--r~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
+.+.++-+..-...- .+++. . .+.+..... ..+. -..++|.|...++..++.+|..++.++.+|+.
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~-~~l~------eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~- 486 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE-KYIL------RTELISFLKREMHNLSPNCKQQVVRIIYNITR- 486 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHH-HHTT------TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHH-HHHH------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence 122222221111100 01100 0 011111000 0111 12378888899988999999999999999985
Q ss_pred hCCCCchhhhH-hhhhHHHHHhhCCCCHH---HHHHHHHHHHHHHHhhccc-----C-ccchHHHHHhhcccCCCh----
Q 000143 1607 VTEPKDMIPYI-GLLLPEVKKVLVDPIPE---VRSVAARAIGSLIRGMGEE-----N-FPDLVSWLLDALKSDNSN---- 1672 (2058)
Q Consensus 1607 l~~~~~l~pyl-~~ll~~L~~~l~d~~~~---vR~~a~~aLg~l~~~lg~~-----~-~~~llp~L~~~L~~d~~~---- 1672 (2058)
+++.-.... +..++.|+.++.+.... +|..|+.||..+.....+. + ....+|.|++.|..++..
T Consensus 487 --d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 487 --SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp --SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred --CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccc
Confidence 222222222 35688888888776544 8999999999998543322 1 127889999998732211
Q ss_pred ---------HHHhhHHHHHHHHHHHhc---hh----HHH--HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc---hhH
Q 000143 1673 ---------VERSGAAQGLSEVLAALG---TV----YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQF 1731 (2058)
Q Consensus 1673 ---------~~R~~aa~~L~~i~~~~g---~~----~l~--~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g---~~f 1731 (2058)
-.+..++.+|..++..-+ .+ .+. ..+|.+.+.+.+.+..+|.+++.++.+++..-. ..|
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 125678889888887542 11 233 488999999999999999999999999986443 233
Q ss_pred HHh----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---cchh--chHHhHhhhcCC--CCHHHHHHHHHHHH
Q 000143 1732 QNY----LQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP--LLLPAVEDGIFN--DNWRIRQSSVELLG 1800 (2058)
Q Consensus 1732 ~py----l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---~~l~--~llp~L~~~l~d--~~~~vR~sav~ll~ 1800 (2058)
... -.+-+++++..+..++..+|.+|..++..+...... ..+. ..++.+...+.+ ++..+|..++-++.
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 211 112388999999999999999999999887533221 1111 244455555655 78899999888888
Q ss_pred HHH
Q 000143 1801 DLL 1803 (2058)
Q Consensus 1801 ~Ll 1803 (2058)
.+.
T Consensus 725 NL~ 727 (778)
T 3opb_A 725 GLF 727 (778)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.00 E-value=1.2e-08 Score=115.48 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=89.7
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
....+.+++.+.++++.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+.+|+.++. .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------~ 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------G
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4566778888888888888888888887642 2556777778888888888888888887753 1
Q ss_pred hHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
..++.+...+.|++..+| .++.+++.... ...++.+...+.|.++.+|..|+.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 345555556666655554 34444443110 1133444444555555555555555544321
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
+..++.|...+.|+++.||..++.+|+.+
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 12344444555555555555555555544
No 70
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.00 E-value=7.8e-06 Score=106.77 Aligned_cols=555 Identities=12% Similarity=0.093 Sum_probs=290.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
.++.-|...+...++. ....-+.++-.+....+-.|.. +.-++..+ +..-..+.||..+.-...++....+.+.-+
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 4555555555533344 3344455555666665544443 22222222 235567889888877777776666543323
Q ss_pred hHHHHHHHhc----cCCChHHHHHHHHHHHHHHhhChhhHhhh-h-hhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh-
Q 000143 1458 LVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQC-L-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 1529 (2058)
Q Consensus 1458 ~llp~Ll~~L----~~~~~~~R~~a~~~Lg~la~~~p~~l~~~-L-~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l~~~- 1529 (2058)
.+...+-..+ .+..-..-..++.++..+..-.|+..+.- + ....+.+.+.+ .+....+..++.+.+...|..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 3222222222 11112222334555555544444432221 1 23455555555 345567777777777766642
Q ss_pred -cCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1530 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1530 -~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+++-..+..++.|...+.+ +.+| .|+-.|..+.........+...+.+.+.+.+.+.+.+.++.|++.+..+.-
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-- 363 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-- 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC--
Confidence 1111235667777777765 3444 344444443222222234556688888888887666668888777776643
Q ss_pred CCCCchhhh---HhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcccC-CChH---HHhhH
Q 000143 1608 TEPKDMIPY---IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD-NSNV---ERSGA 1678 (2058)
Q Consensus 1608 ~~~~~l~py---l~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~~d-~~~~---~R~~a 1678 (2058)
++ ++... -+.+++.|..++.+ .+..+...+...|+.+......... .+=+..|....+.. +... .....
T Consensus 364 -~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 364 -KA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp -SS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHH
T ss_pred -CH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccc
Confidence 22 22222 23567778888874 5666777777777777654322100 01111122221110 0000 00000
Q ss_pred HHHHHH-HHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHH---HH
Q 000143 1679 AQGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES---VR 1754 (2058)
Q Consensus 1679 a~~L~~-i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~---VR 1754 (2058)
...+.+ ....+-. ..++|.+...+.+.++.+|+.+++++..++..-...-.-.-...+|+++..+.+..+. +|
T Consensus 442 ~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 442 KEDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred hHHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 111111 1111111 3588889999999999999999999999976532211111235788899988776543 78
Q ss_pred HHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH
Q 000143 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2058)
Q Consensus 1755 ~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~ 1834 (2058)
..|+.|+..+.....+.. +++ + ... ..++.-+-.|+..-.+..+..+ .+++.
T Consensus 519 ~~AA~ALArLlis~np~~---~f~----~-~~~-----~~aI~pLv~LL~~~~~~~~~~l----~~~~~----------- 570 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGL---IFK----K-YSA-----LNAIPFLFELLPRSTPVDDNPL----HNDEQ----------- 570 (778)
T ss_dssp HHHHHHHHHHHHTSCHHH---HSS----S-SCS-----TTHHHHHHHTSCCSSSCSSCC-------CCC-----------
T ss_pred HHHHHHHHHHHhcCCHHH---HcC----C-Ccc-----ccchHHHHHHcCCCCCcccccc----ccccc-----------
Confidence 899999988764322110 000 0 000 0112222222100000000000 00000
Q ss_pred HHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh---hhH-HHhHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2058)
Q Consensus 1835 ~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~---~~l-~~~l~--~L~~~l~~~L~~~~~~~R~~A~~~ 1908 (2058)
....-+..|+.++..++.... +.. ..++. ..++.+...+.+++..+|..|.++
T Consensus 571 ---------------------~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 571 ---------------------IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred ---------------------ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 001112334444555554321 122 22332 356677777888999999999999
Q ss_pred HHHHHHHhCc---chh----hc---hHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcC
Q 000143 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2058)
Q Consensus 1909 Lg~L~~~lg~---~~l----~~---llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D 1976 (2058)
++.++..-.. .++ +. -++.|...++.++.++|..++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999963321 222 11 2778888898889999999999998654332 21112222 3467778888888
Q ss_pred --CCHHHHHHHHHHHHHHHHH
Q 000143 1977 --SILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1977 --~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+++++|..++.++..+..+
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999874
No 71
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.95 E-value=9.8e-09 Score=120.76 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=164.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL- 1497 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L- 1497 (2058)
+.+...+.++++.+|..|..++..++...... .+ ...+|.+++.+.+.+..+|..|+.+|+.++...++.-....
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44556677888999999999997766542221 11 45789999999999999999999999999986554322221
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCC--
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-- 1570 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i--~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~-- 1570 (2058)
...+|.+..+++++++.||..|+++|+.++..-... .+ ...+|.+++.+.+++..++ .++.++..........
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 258999999999999999999999999998753322 11 4588999999999888776 5666666532211000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
.-.-...+|.+...+.+.++.++..|+.++++++. .++....... ...++.+..++.++++++|..|..+|+.++
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 00113468889999999999999999999999985 2322222222 257888999999999999999999998765
No 72
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.95 E-value=3.1e-08 Score=116.14 Aligned_cols=237 Identities=19% Similarity=0.152 Sum_probs=168.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
+|.+++.+.++++.+|..|+.+|+.++...++...... ..++|.+.+.+.++++.||..|+++|+.++..- +...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~-- 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAI-- 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHH--
Confidence 56777777777777788888888888766553222211 368899999999999999999999999997531 1111
Q ss_pred HHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hH
Q 000143 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl 1617 (2058)
.. +. -...+|.+...+++.++.++..++.++++++.. .+..... .-
T Consensus 80 ----------------~~---~~------------~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~ 126 (252)
T 4hxt_A 80 ----------------KA---IV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVD 126 (252)
T ss_dssp ----------------HH---HH------------HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHH
T ss_pred ----------------HH---HH------------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 00 00 012456677777777888999999999998852 2111111 12
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 1692 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~- 1692 (2058)
...++.+..++.++++.+|..++.+++.++...... .-...+|.|++.+.+ .+..+|..++.+|+.++......
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 357899999999999999999999999998632221 124688999999884 55678999999999887522111
Q ss_pred -HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHh
Q 000143 1693 -YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2058)
Q Consensus 1693 -~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~py 1734 (2058)
.+ ...++.+...+.++++.+|..++.+++.++...+..+.+|
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 11 4578899999999999999999999999998766544333
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.93 E-value=1.3e-07 Score=122.08 Aligned_cols=342 Identities=13% Similarity=0.077 Sum_probs=219.2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCch-
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP- 1533 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l-~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~- 1533 (2058)
.-+|.+++.|.+.+...+..|+.+|..++...++.- .-.-...+|.|+.+|...++.|+..|+++|..++.. -.+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 345666666666666666666666666665433221 111136789999999999999999999999999863 1121
Q ss_pred hH--HhHHHHHHhccCC-CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhh------------------cCCCHH
Q 000143 1534 EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAE 1591 (2058)
Q Consensus 1534 ~i--~~lvp~Ll~~l~d-~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L------------------~d~s~~ 1591 (2058)
.+ ...+|.|+..+.. ++..++ .+..+|................-+|.|.+.+ ...+.+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 22 3567888888875 444554 3333433321211111111122345555543 112578
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhC------CCCHHHHHHHHHHHHHHHHhhccc---------
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGEE--------- 1653 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~------d~~~~vR~~a~~aLg~l~~~lg~~--------- 1653 (2058)
++..|+.++.+++.. + .+.... ...+++.|+..+. +++....+.|+.+|..++.....+
T Consensus 208 V~~nAa~~L~NLs~~--~-~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSE--R-SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHTSS--C-HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHhcC--C-HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 999999999999862 2 111111 1245555655544 345667788888887777543110
Q ss_pred --------------------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh------HH--HHhhHHHHHhh
Q 000143 1654 --------------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNC 1705 (2058)
Q Consensus 1654 --------------------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~------~l--~~llp~Ll~~l 1705 (2058)
+-+..++.|+..|+......++..++.+|..++.+-+.. .+ ...+|.|...+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 112456777888875556778899999999887532211 12 46789999999
Q ss_pred ccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHHhccc---chh
Q 000143 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYATT---SLP 1774 (2058)
Q Consensus 1706 ~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~--------~~~VR~~a~~al~~lv~~~~~~---~l~ 1774 (2058)
.+++..++..++.++.+++...... ...-...+|.++..|.+. .+++...++.++..++..-... .++
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999998865432 233467899999999875 4678888888888776321111 111
Q ss_pred -chHHhHhhhcCCC--CHHHHHHHHHHHHHHH
Q 000143 1775 -LLLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1775 -~llp~L~~~l~d~--~~~vR~sav~ll~~Ll 1803 (2058)
..+|.|...+.+. ..+++..|..++..+.
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 2678888888765 7888999988888875
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.89 E-value=2.1e-07 Score=119.33 Aligned_cols=339 Identities=13% Similarity=0.106 Sum_probs=222.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~ 1455 (2058)
+|.+...+.+. ++..+..|..++..++..-. .....+ ...+|.+...+.++++.++..|..++..++...+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56667777776 78889999999988874221 122122 247899999999999999999999999998642222 1
Q ss_pred H--HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh--------cCC--------CHHHH
Q 000143 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L--------~D~--------~~~VR 1516 (2058)
+ ...+|.+++.|. +.+...+..++.+|+.++.+..... ......+|.|+.++ .++ ++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 356899999998 7889999999999999998722111 12237888888888 322 45677
Q ss_pred HHHHHHHHHHHhhcCc--hhH---HhHHHHHHhccCC------CCh-hHHHHHHHHHhccccc-----------------
Q 000143 1517 SAGQTALQQVGSVIKN--PEI---ASLVPTLLMGLTD------PND-HTKYSLDILLQTTFVN----------------- 1567 (2058)
Q Consensus 1517 ~aA~~aL~~l~~~~~~--~~i---~~lvp~Ll~~l~d------~~~-~vr~al~~L~~~~f~~----------------- 1567 (2058)
..|+++|..++.. .+ ..+ ...+|.|+..+.+ ++. .+..|+..+....|..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999875 21 112 1567777766643 222 2223333322211100
Q ss_pred -------------c-------------------CCh-h--hHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1568 -------------T-------------------VDA-P--SLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1568 -------------~-------------------~~~-~--~l~~llp~L~~~L~d-~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
. ... . .....++.+...+.+ .++.++..|+.++.+++.. +..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~--~~~ 317 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS--KGL 317 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC--SSS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC--cCc
Confidence 0 000 0 012345666666653 5689999999999999862 211
Q ss_pred ---ch-hhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc--CccchHHHHHhhcccCCC-----hHHHhhH
Q 000143 1612 ---DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGA 1678 (2058)
Q Consensus 1612 ---~l-~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~--~~~~llp~L~~~L~~d~~-----~~~R~~a 1678 (2058)
.+ ...+ ...+|.|..++.+++.+++..|+.+|..++..-.-. .-...+|.|++.|..... .++...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 11 1112 357899999999999999999999999998632111 123588889999975422 2344566
Q ss_pred HHHHHHHHHHhchh--HH--HHhhHHHHHhhccC-ChhHHHHHHHHHHHhH
Q 000143 1679 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~--~l--~~llp~Ll~~l~~~-~~~vR~~al~~l~~la 1724 (2058)
+.+++.++..-... .+ ...++.+.+.+.+. +..++..+...+..+.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 67777776432221 12 35778888888888 8899999888887654
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.88 E-value=3e-07 Score=116.08 Aligned_cols=212 Identities=11% Similarity=0.072 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---C--ccchHH
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N--FPDLVS 1660 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~--~~~llp 1660 (2058)
+..+++.|+.++.+++. ++. ..... ....+|.|..++.+++++++..|+.+|+.++..-.++ . -...+|
T Consensus 213 ~~~l~~~Aa~aL~nLa~--~~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTF--GDV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHT--TCH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhC--CCc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHH
Confidence 35788999999999986 231 12222 2457999999999999999999999999997531111 1 135788
Q ss_pred HHHhhcccCCChHHHhhHHHHHHHHHHHhch--hHH---HHhhHHHHHhhccCCh----hHHHHHHHHHHHhHHH--hch
Q 000143 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF---EHILPDIIRNCSHQRA----SVRDGYLTLFKYLPRS--LGV 1729 (2058)
Q Consensus 1661 ~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~--~~l---~~llp~Ll~~l~~~~~----~vR~~al~~l~~la~~--~g~ 1729 (2058)
.|++.|....+..++..++.+|..++..... ..+ ...+|.+...+.+.+. .+++.++.++.+++.. .++
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 369 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence 9999765445566788888888887763321 112 4578888888887643 4888899999998863 222
Q ss_pred hHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---cchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1730 QFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1730 ~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+....+ ...+|.++..|.+.+..+++.|+.++..+...... ..++ -.+|.|.+.+.+.+.++|..+...+..++
T Consensus 370 ~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222222 34789999999999999999999999988632111 1111 36899999999999999999999999986
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.87 E-value=6.7e-07 Score=115.40 Aligned_cols=344 Identities=13% Similarity=0.077 Sum_probs=224.9
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh---Ccc
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GIS 1372 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~---~~--~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~---g~~ 1372 (2058)
-++.|+..|.++++.+|..++.++..+.....+ .+ ...++.|++.| .+++..++..|+.+|..++.+- ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 467788888999999999888888777643211 11 23567777655 4567899999999999998631 112
Q ss_pred ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc------------------CCCCH
Q 000143 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2058)
Q Consensus 1373 ~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l------------------~D~~~ 1434 (2058)
.+.....+|.|.+.+.+..+...++.+..++..++.. ...-...+...+|.|...+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 2234467889999988755778888888888888752 1111122334566666543 12357
Q ss_pred HHHHHHHHHHHHHHHhhhh--hhH---HhHHHHHHHhccC------CChHHHHHHHHHHHHHHhhChhhH----------
Q 000143 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL---------- 1493 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~--~~v---~~llp~Ll~~L~~------~~~~~R~~a~~~Lg~la~~~p~~l---------- 1493 (2058)
.|+..|..+|..++..... ..+ ..+++.|+..+.+ .+.+....|+.+|.++++......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 9999999999998754322 112 2345666666542 456777888999988887632111
Q ss_pred ---------------hh-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCc--h----hH--HhHHHHHHhccCC
Q 000143 1494 ---------------SQ-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN--P----EI--ASLVPTLLMGLTD 1548 (2058)
Q Consensus 1494 ---------------~~-~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~--~----~i--~~lvp~Ll~~l~d 1548 (2058)
.. +-+.+++.++.++.+ .++.++++|+.+|..++..-.. . .+ ...+|.|.+.+..
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 00 123567888888853 5799999999999999753210 1 12 3568999999998
Q ss_pred CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHHhhhCCCCchhhhH-h
Q 000143 1549 PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPYI-G 1618 (2058)
Q Consensus 1549 ~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~--------s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~ 1618 (2058)
++..++ .++.+|.............-...+|.|.+.|... +.++...|+.++++++. +++....... .
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~~ 444 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRET 444 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHHC
Confidence 887775 4555555422222222222345778888888654 46788889999998875 2322222222 2
Q ss_pred hhhHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 000143 1619 LLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~--~~~vR~~a~~aLg~l~~ 1648 (2058)
..+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 5788888888775 77888888888888773
No 77
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.84 E-value=2.7e-08 Score=116.98 Aligned_cols=225 Identities=17% Similarity=0.175 Sum_probs=166.3
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~--~~l 1374 (2058)
++.+...|.++++.++..++.++..++....+.. ...++.+++.+.. +++.+|..|+.+|+.+..+... ..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4556667778888899888888866554321111 1345666665544 4589999999999998763211 111
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~ 1453 (2058)
.....++.|.+.+.++ ++.+|+.|+.+++.++..........+ ...+|.++..+.++++.+|..|..++..++...+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 1235789999999886 899999999999999764332112222 24889999999999999999999999999754332
Q ss_pred hh---H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 QG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 ~~---v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
.. + ..++|.+++.+.+++..+|..++.+|+.++...+....... ..+++.+..++.+.++.||..|+++|..++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 21 1 46789999999999999999999999999976665433222 3588999999999999999999999998764
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.83 E-value=3.7e-05 Score=109.92 Aligned_cols=140 Identities=11% Similarity=0.132 Sum_probs=90.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHhCcc--
Q 000143 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGER-- 1919 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~------------~~~~~R~~A~~~Lg~L~~~lg~~-- 1919 (2058)
+..++.+|..++.+|+.+...+.. -.++++.+++.++..+.+ .+.++|..|+.++..+++.+++.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344678999999999888754332 136777777777776655 23579999999999999998765
Q ss_pred -hhhchHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhC-hhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1920 -VLPSIIPILSRGLKDP---SASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1920 -~l~~llp~L~~~l~d~---~~~vR~~a~~aL~eii~~~~-~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
+++++...+...+... +...+.....+++-+....+ .+....|+..+++.+.....++ +.+. +......++.
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~--~~~~-~~s~~~~f~~ 697 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQ--DMHR-VLSDVDAFIA 697 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCH--HHHH-HHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccH--HHHH-hhcCHHHHHH
Confidence 4556666666655432 34556666667775543333 3344556888888888877543 3443 3333344444
Q ss_pred HhC
Q 000143 1995 SAG 1997 (2058)
Q Consensus 1995 ~~g 1997 (2058)
.+|
T Consensus 698 ~~G 700 (1204)
T 3a6p_A 698 YVG 700 (1204)
T ss_dssp HHT
T ss_pred HhC
Confidence 444
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.79 E-value=5.3e-07 Score=113.88 Aligned_cols=313 Identities=12% Similarity=0.030 Sum_probs=199.2
Q ss_pred chHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhcccchhhH----HH-------HHHHHHHHcCCC---
Q 000143 1378 GIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYV----IQ-------MLPLLLVAFSDQ--- 1432 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~-----------~~~~R~~al~al~~L~~~lg~~~~p~l----~~-------llp~Ll~~l~D~--- 1432 (2058)
.++|.|.+.++..+ ++..|..|..++..|+.+-++....-. -. ..+.+++.+...
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 56777777776532 378999999999999987654333211 11 113333333221
Q ss_pred -C---HHHHH-------HHHHHHHHHHHhhhhh--hH--HhHHHHHHHhcc----------C-CChHHHHHHHHHHHHHH
Q 000143 1433 -V---VAVRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLE----------D-KAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1433 -~---~~VR~-------aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~----------~-~~~~~R~~a~~~Lg~la 1486 (2058)
+ ..||+ .|.++|..++.. +.. .+ ...++.|+..+. + .+...+..|+.+|..++
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 11666 778888877433 211 11 245666666663 1 23567889999999999
Q ss_pred hhChhh--HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1487 YCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1487 ~~~p~~--l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
...+.. ........+|.|+.+|...++.|+..|+++|..++.. .++. .|.++..
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~------------------~k~~I~~----- 284 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVN------------------SKKTLRE----- 284 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHH------------------HHHHHHH-----
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHH------------------HHHHHHH-----
Confidence 876432 1112356799999999999999999999999998642 1111 1111110
Q ss_pred ccccCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh--HhhhhHHHHHhhCCCCH----HHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVRS 1637 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~-L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~~ll~~L~~~l~d~~~----~vR~ 1637 (2058)
...+|.|.+. +...+..++..|+.++.+|+.. .+ ..-... ....+|.|..++.++.. +++.
T Consensus 285 ----------~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~-~~-~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~ 352 (458)
T 3nmz_A 285 ----------VGSVKALMECALEVKKESTLKSVLSALWNLSAH-CT-ENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352 (458)
T ss_dssp ----------TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH-CH-HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHH
T ss_pred ----------cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC-CH-HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHH
Confidence 1134555554 3445677888888888888762 11 111112 23578889998886543 4889
Q ss_pred HHHHHHHHHHHh--hcccC-----ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch--hHH--HHhhHHHHHhhc
Q 000143 1638 VAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCS 1706 (2058)
Q Consensus 1638 ~a~~aLg~l~~~--lg~~~-----~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~--~~l--~~llp~Ll~~l~ 1706 (2058)
.|+.+|..++.. .+++. -...+|.|++.|++. +..++..++.+|+.++..-.. ..+ ...+|.+.+.+.
T Consensus 353 ~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 999999988852 12221 135789999999854 455888999999988742111 122 457899999999
Q ss_pred cCChhHHHHHHHHHHHhHHHhc
Q 000143 1707 HQRASVRDGYLTLFKYLPRSLG 1728 (2058)
Q Consensus 1707 ~~~~~vR~~al~~l~~la~~~g 1728 (2058)
+.+..+|+.+..++.+++..-.
T Consensus 432 s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 432 SKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999886543
No 80
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.69 E-value=4.3e-07 Score=103.37 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=142.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2058)
...|.+...+.++++.+|..|..++..++...+.. .+ ...+|.+++.+.+.++.+|..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567778889999999999999999997443322 12 357899999999999999999999999999765543222
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1496 ~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
.. ...+|.++..++++++.||..|+++|+.++... +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 11 368899999999999999999999999997521 1110 0000 1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
...+|.+.+.+++.+..++..|+.++++++.. .+..... .-...++.|..++.++++++|..|..+|+.++
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 12567777777777889999999999999862 2221111 12357899999999999999999999999876
No 81
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.67 E-value=2.2e-07 Score=105.81 Aligned_cols=188 Identities=19% Similarity=0.164 Sum_probs=141.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000143 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2058)
Q Consensus 1340 ~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~--~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~ 1417 (2058)
...+..+..++++.+|..|+.+|..+..+... ..+.....++.|.+.+.+. ++.+|+.|+.+++.++..........
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444555667788898899988888753211 1122236788899999887 89999999999999874322111111
Q ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h-H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh
Q 000143 1418 V-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2058)
Q Consensus 1418 l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~-v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~ 1492 (2058)
+ ...+|.++..+.++++.+|..|..++..++...... . + ...+|.+++.+.+.+..+|..++.+|+.++...+..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 1 247899999999999999999999999997543322 1 1 457899999999999999999999999999875544
Q ss_pred Hhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1493 LSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1493 l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
... .-...++.|.+++.+.++.||+.|+++|..+++
T Consensus 173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222 123688999999999999999999999999864
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.56 E-value=2.3e-05 Score=81.35 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000143 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2058)
Q Consensus 1349 ~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~ 1428 (2058)
++-|.+++.|...+..+++....-. .+++..|...+..+..-..-++...+||.++..-+ ..+..++|.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~---epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLY---EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHH---HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHHHHHHH
Confidence 3346666666665555555432110 12333333333322222233344456777665432 2456788999988
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1429 l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
+.-.++..|-....+++.++...+. ....+...+...+.+++-..|..++..++.+.+..++...++ +|.+..+|
T Consensus 116 yrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~Pf----LprL~aLL 190 (253)
T 2db0_A 116 YRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLL 190 (253)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGG----HHHHHGGG
T ss_pred HhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcc----hHHHHHHH
Confidence 8877899999999999999876543 345566677788889998889999999999988877766655 55677899
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr 1554 (2058)
.|.+..||..|.++|..++.. +|.+..++...++-++|+++-+.
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999999975 66788888888888999987653
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=1.8e-06 Score=99.40 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhh-HHHH
Q 000143 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQM 1421 (2058)
Q Consensus 1350 ~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l----~~~~~~~~R~~al~al~~L~~~lg~---~~~p~-l~~l 1421 (2058)
.++..|..|...|...+.......+ ..++.+...+ .+. |..+-..++..+..+...+++ .+.+| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3688888777777776654221111 2233334433 354 888888888888888776643 46666 4789
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
+|.++..++|+.+.||+.+...+..+...+++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l 206 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSL 206 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGG
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----cccc
Confidence 99999999999999999999999888765554 3567788889999999999999999999986644332 2456
Q ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1502 ---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1502 ---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
|.+.++++|++..||.+|..++..+....++.
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999999999988877764
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.52 E-value=2.6e-05 Score=80.99 Aligned_cols=216 Identities=19% Similarity=0.156 Sum_probs=169.1
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhc
Q 000143 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2058)
Q Consensus 1299 ~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~ 1378 (2058)
+.++..++..|.|.-|.||..+...+..+....++-....+..++-.+..++.-..-...+.+++.++... ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 67788899999999999999999888888887777778888899988888876666667778888877643 33332 5
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
++|.+.....-. +++.|-+.-.+++.|+...++ ....+..-++..+.+++..=|-+|..-++.+..+- ...+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-ccccCc
Confidence 677777766555 889999999999999886553 23455666677888988888888877666654332 233567
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
++|.++..|.|.+--+|..+++.|+.++...|+ +..++-..++-++|++..|....-.+|+.+.-
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987765 34556666777999999999999999988863
No 85
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.52 E-value=5.4e-05 Score=103.94 Aligned_cols=463 Identities=11% Similarity=0.078 Sum_probs=232.4
Q ss_pred HHHHHHhhcCchhHHhHHHHHHhccCCCCh-hH-H-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000143 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPND-HT-K-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2058)
Q Consensus 1522 aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~v-r-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~ 1598 (2058)
++..|++.+....++.++..+.+--.+.+. .. + .-+..+.+.-+ .......+..+.|.+.....+.+..-.+.|++
T Consensus 452 i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~-rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaE 530 (997)
T 1vsy_5 452 VLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLIS-SGFCELNMSDLFELCESYYNKDDKASMIMSVE 530 (997)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHT-TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHh-cccchhhHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345566555555667777766532111111 11 1 12222221000 11123457789999999888888888899999
Q ss_pred HHHHHHhhhC--CCCchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcccCccchHHHH--Hhh--cccCCC
Q 000143 1599 IVGNMCSLVT--EPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL--LDA--LKSDNS 1671 (2058)
Q Consensus 1599 ~l~~L~~~l~--~~~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L--~~~--L~~d~~ 1671 (2058)
+++.+..... ..+.....-.-+.|.+...+. +-.++....=..++..+.....+..++.++..+ ++. ..+...
T Consensus 531 i~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~s 610 (997)
T 1vsy_5 531 IVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDA 610 (997)
T ss_dssp HHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCc
Confidence 9988765211 113344455568888888888 567776655555555565555554455555544 221 111112
Q ss_pred hHHHhhHHHHHHHHHHHhchh--HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc-hhHHHhHHHHHHHHHHh---
Q 000143 1672 NVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDG--- 1745 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~--~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g-~~f~pyl~~ilp~Ll~~--- 1745 (2058)
.........-|..++...|-. ..++++..++ +.++...||+.+...+..+....- +.+ +....++......
T Consensus 611 sf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~-~~~~~~l~~~~~~~~~ 687 (997)
T 1vsy_5 611 ATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSI-SDPTTLLEAERNDPDG 687 (997)
T ss_dssp CCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCB-SCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHhhcccccc
Confidence 212223344444444444432 1345555555 777889999999999988776541 001 1112222111110
Q ss_pred --c--cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHH--HHHHHHHHHHHH---------HhhCCc
Q 000143 1746 --L--ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR--QSSVELLGDLLF---------KVAGTS 1810 (2058)
Q Consensus 1746 --L--~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR--~sav~ll~~Ll~---------~~~g~~ 1810 (2058)
+ .+..+.+.+...+.+..+-...... +..-| .-......++ ...+..+...+. -+.+..
T Consensus 688 ~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~--~~~~~----~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~l 761 (997)
T 1vsy_5 688 LGLPLKSVPEKVDAYIKKQFEIIKNLEDSV--VGLNP----QQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYV 761 (997)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHHTGGGGTT--SSCCS----TTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTT
T ss_pred ccCccccCcchHHHHHHHHHHHHHHhhhcc--cccCc----cccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHH
Confidence 0 0111222222222222111000000 00000 0000000000 011111111000 000001
Q ss_pred ccccccCCCCCCC-cchHHHHHHHHHHh-----ChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHh-hChhhHHHh
Q 000143 1811 GKALLEGGSDDEG-ASTEAHGRAIIEVL-----GRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVA-NTPKTLKEI 1882 (2058)
Q Consensus 1811 ~k~~~~~~~e~~~-~~~e~~~~~l~~~L-----g~~~~~~vL~~L~~~~~-D~~~~VR~aA~~~l~~lv~-~~~~~l~~~ 1882 (2058)
.+.++.-.+.+|. .........+...+ .++..+.++..+..... +.++ .|.+++..+..++- |..--..+-
T Consensus 762 lP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~ 840 (997)
T 1vsy_5 762 LPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE 840 (997)
T ss_dssp TTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH
T ss_pred HHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH
Confidence 1111110111110 00000011122233 22333445555544333 6788 99999888766652 221100112
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCc-chhhchHHHHhhhcCC------------CChhHHHHHHHHHH
Q 000143 1883 MPVLMNTLISSLASSS-SERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKD------------PSASRRQGVCIGLS 1948 (2058)
Q Consensus 1883 l~~L~~~l~~~L~~~~-~~~R~~A~~~Lg~L~~~lg~-~~l~~llp~L~~~l~d------------~~~~vR~~a~~aL~ 1948 (2058)
-..+.+.++..|.|+. .+||..|+.+|+.+++..+. .....++..+.+.+.. .....|.+++.+|+
T Consensus 841 ~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~ 920 (997)
T 1vsy_5 841 KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLG 920 (997)
T ss_dssp HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHH
Confidence 2466777888899999 99999999999999975423 3334555555554422 01146788999999
Q ss_pred HHHHhhChhh-hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1949 EVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1949 eii~~~~~~~-l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.++.+.+-+. .-+|++.++..|-....|+.+ |+..+-.+++.+.+.-
T Consensus 921 AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 921 AIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp HHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred HHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 9998875432 146888888888878888776 9999999999987653
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.3e-06 Score=101.98 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=137.1
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhh-----HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-----l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2058)
+.+.+.+.+|..|..|++.+..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++...+.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 568899999999999999998888664432 2223456667778889999999999999999999886542
Q ss_pred ----hhHHhHHHHHHhc-cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1533 ----~~i~~lvp~Ll~~-l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
.+...++|.++.. +.|+...++ .+++++....... .....+++.+..+++..++.++..++..+..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346788888865 788888776 4555554311111 11234677788899999999999999888887765
Q ss_pred hCCC-CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1607 l~~~-~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.+.. ....+.++.+++.+..++.|+++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4432 2345567778888999999999999999999999999999865
No 87
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.42 E-value=0.00019 Score=98.64 Aligned_cols=656 Identities=12% Similarity=0.061 Sum_probs=307.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhC---CCCHHHHHHHHHHHH--HHHHHh
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFE--CLCEKL 1410 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~---~~~~~~R~~al~al~--~L~~~l 1410 (2058)
..++..+++ +..+.=..+|+.|..+|..+.+.+.... ..++|.+.+.++. ..+...-+||+..+. .++..+
T Consensus 132 ~~ll~dL~~-Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~---~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~ 207 (997)
T 1vsy_5 132 NLLLVDIIQ-LATSLYPDIYKPAQGTLVHCMKQLVGSY---GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL 207 (997)
T ss_dssp HHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHTTBTTHH---HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG
T ss_pred HHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH
Confidence 455666665 4455557899999999998888663322 2566666666544 346677788887655 333333
Q ss_pred cccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----------------------hh------------
Q 000143 1411 GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----------------------QG------------ 1455 (2058)
Q Consensus 1411 g~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----------------------~~------------ 1455 (2058)
... -.++..+++.++.+...+.+.|+..+..+...++..+.. .+
T Consensus 208 ~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 221 235678889999888777888877776665555542111 00
Q ss_pred --H----HhHHHHHHHhc-cCCC--hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1456 --V----KLVLPSLLKGL-EDKA--WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1456 --v----~~llp~Ll~~L-~~~~--~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
. ..+...+++.. .+.. |+....++..+-.+..... .+.-+.++..+.+.+.|.||.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 1 11222223333 2356 9888777766444432111 122246777888999999999999999999777
Q ss_pred HhhcCchh-----HHhH-----HHHHHhccCCCC-hhHHHHHHHHHh---cc-ccccC------C---------------
Q 000143 1527 GSVIKNPE-----IASL-----VPTLLMGLTDPN-DHTKYSLDILLQ---TT-FVNTV------D--------------- 1570 (2058)
Q Consensus 1527 ~~~~~~~~-----i~~l-----vp~Ll~~l~d~~-~~vr~al~~L~~---~~-f~~~~------~--------------- 1570 (2058)
...+.... +..+ .|.-+....+++ .....-.+.+.. .. |+... .
T Consensus 364 l~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l 443 (997)
T 1vsy_5 364 CNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKL 443 (997)
T ss_dssp HHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCC
T ss_pred HHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCC
Confidence 66432100 0000 000000000010 011111111110 01 22100 0
Q ss_pred --hhhHhhHHHHHHH-------------hhcCC--CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCH
Q 000143 1571 --APSLALLVPIVHR-------------GLRER--SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633 (2058)
Q Consensus 1571 --~~~l~~llp~L~~-------------~L~d~--s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~ 1633 (2058)
.+.-..++..+.+ ..+|. +..-+..-+..+..+..++... .-...++.+.+.+..+..|.+.
T Consensus 444 ~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn-~~~~~l~~l~~~~e~L~~~~dk 522 (997)
T 1vsy_5 444 NLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSG-FCELNMSDLFELCESYYNKDDK 522 (997)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTT-TCCCCGGGHHHHHHHTCCSSCH
T ss_pred CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHhccccH
Confidence 0000011111110 01111 0000111222333333322100 0012356677788888888888
Q ss_pred HHHHHHHHHHHHHHHhhccc---C----ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHH--h
Q 000143 1634 EVRSVAARAIGSLIRGMGEE---N----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR--N 1704 (2058)
Q Consensus 1634 ~vR~~a~~aLg~l~~~lg~~---~----~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~--~ 1704 (2058)
.-+..+++.++.+..+...- . ..-+.|.+...+.++-..+....=..++.-+.....+..+..++..+.. .
T Consensus 523 ~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~ 602 (997)
T 1vsy_5 523 ASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADG 602 (997)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhc
Confidence 88888899888887643211 1 1235555555554222222222212233344444444445555554422 1
Q ss_pred h---ccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHh
Q 000143 1705 C---SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2058)
Q Consensus 1705 l---~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~ 1781 (2058)
. .+.+.-....-+.++..+....|-.+.. ...++..++ +.++...||+.....+..+....-.... |..
T Consensus 603 ~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~----~~~- 674 (997)
T 1vsy_5 603 MFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSI----SDP- 674 (997)
T ss_dssp CCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCB----SCH-
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCC----CCH-
Confidence 1 1111111111233343333333433322 344555555 8889999999998888877654321110 000
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH---HHhChhhHHHHHHHHHHhhcC---
Q 000143 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII---EVLGRDKRNEVLAALYMVRSD--- 1855 (2058)
Q Consensus 1782 ~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~---~~Lg~~~~~~vL~~L~~~~~D--- 1855 (2058)
..++.......+...+. .. .........+. +.+.....+ ...+..
T Consensus 675 ------------------~~~l~~~~~~~~~~~~~--~~---~~~~~~~~~i~~~f~~l~~~~~~------~~~~~~~~~ 725 (997)
T 1vsy_5 675 ------------------TTLLEAERNDPDGLGLP--LK---SVPEKVDAYIKKQFEIIKNLEDS------VVGLNPQQF 725 (997)
T ss_dssp ------------------HHHHHHHHSCSSSSCCC--SS---CCCHHHHHHHHHHHHHHTGGGGT------TSSCCSTTT
T ss_pred ------------------HHHHHhhccccccccCc--cc---cCcchHHHHHHHHHHHHHHhhhc------ccccCcccc
Confidence 01111000000000000 00 00011111111 111100000 000000
Q ss_pred -CCHHHHHHHHHHHHHHHhhC----hhhHHHhHHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHHHh-CcchhhchHH
Q 000143 1856 -VSLSVRQAALHVWKTIVANT----PKTLKEIMPV-LMNTLISSLASSSS-ERRQV-AGRALGELVRKL-GERVLPSIIP 1926 (2058)
Q Consensus 1856 -~~~~VR~aA~~~l~~lv~~~----~~~l~~~l~~-L~~~l~~~L~~~~~-~~R~~-A~~~Lg~L~~~l-g~~~l~~llp 1926 (2058)
.+...+ .+..++.=+.... ...+.++++. ++|.+.......+. +.... |..++..+.... .....+.++.
T Consensus 726 ~~s~y~~-~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~ 804 (997)
T 1vsy_5 726 IKTDYFY-RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVD 804 (997)
T ss_dssp TTSHHHH-HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 011111 0111111111111 2235566665 66666554444433 33333 334443332111 1223455555
Q ss_pred HHhhhcC-CCChhHHHHHHHHHHHHHH-h---hChhhhHhHHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCh-h
Q 000143 1927 ILSRGLK-DPSASRRQGVCIGLSEVMA-S---AGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGM-Q 1999 (2058)
Q Consensus 1927 ~L~~~l~-d~~~~vR~~a~~aL~eii~-~---~~~~~l~~~~~~ll~~L~~~L~D~d-~~VR~~Aa~a~~~l~~~~g~-~ 1999 (2058)
.+.+..+ +++. .|..+..-+.-+.- + ++.+. ...+...+..+|.|+. .+||+.|+.+++.+.+..+. .
T Consensus 805 ~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~----~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~ 879 (997)
T 1vsy_5 805 YVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE----KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ 879 (997)
T ss_dssp HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH----HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh
Confidence 5555554 4456 88877665433322 1 12221 1567888888999999 99999999999999876523 4
Q ss_pred hHHHHHHHHHHhcCC---C-----------cchHHHHHHHHHHHhhcCCc-cchhhhhh
Q 000143 2000 AIDEIVPTLLHALED---D-----------QTSDTALDGLKQILSVRTTA-VLPHILPK 2043 (2058)
Q Consensus 2000 ~~~~ilp~Ll~~L~~---~-----------~~~~~al~aL~~i~~~~~~~-~lp~lip~ 2043 (2058)
..++++..+...+.. . ..+..++-||+.++...|=. +.|.-+|.
T Consensus 880 ~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~ 938 (997)
T 1vsy_5 880 PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPK 938 (997)
T ss_dssp HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHH
T ss_pred hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHH
Confidence 455666766666522 1 13568999999999776533 23444443
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.40 E-value=1.3e-06 Score=105.36 Aligned_cols=211 Identities=16% Similarity=0.141 Sum_probs=158.5
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-------chHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHH
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMKS---------DKYGERRGAAFGLAG 1364 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-------~~~~~v~~Ll~~L~~~---------~~~~vR~~Aa~~L~~ 1364 (2058)
+...|+.-|-++.|++|..++-+|..+++..+. ...++.-.++..+.-+ --..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 788899999999999999999999988876531 1124445555544422 135799999999999
Q ss_pred HHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000143 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1365 l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al 1444 (2058)
+ ..+..+ ..++..+...+..+ .|++|++++.++.++.+- +.. ++.+++.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DL----L~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEF----VED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGG----CCC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHH----HHH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777655 35666555544444 899999999999988222 222 788999999999999999999999999
Q ss_pred HHHHHhhhhhhHHhHHHHHHHhccCC-Ch-HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1445 RAMMSQLSAQGVKLVLPSLLKGLEDK-AW-RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2058)
Q Consensus 1445 ~~l~~~l~~~~v~~llp~Ll~~L~~~-~~-~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~a 1522 (2058)
.-++ .++.++.++..+++.|.+- +- ..-...+.+|+.++...+. ....+.++|.|...+..+-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 8887 4456788888888887642 22 3334457788888876542 22235899999999999999999999999
Q ss_pred HHHHH
Q 000143 1523 LQQVG 1527 (2058)
Q Consensus 1523 L~~l~ 1527 (2058)
+..|.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 87765
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.40 E-value=9.7e-06 Score=99.32 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHH
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l---~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~L 1463 (2058)
++..++.|..++..++..-.. ....+ ..++|.|+..+..+++.++..|..+|..++..-.. ..+ ...+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 456788888888888743221 22222 35799999999999999999999999999753111 222 3568999
Q ss_pred HHhc-cCCChHHHHHHHHHHHHHHhhChhh-Hhhh-hhhHHHHHHHHhcCCCH----HHHHHHHHHHHHHHhhc-CchhH
Q 000143 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2058)
Q Consensus 1464 l~~L-~~~~~~~R~~a~~~Lg~la~~~p~~-l~~~-L~~Iip~L~~~L~D~~~----~VR~aA~~aL~~l~~~~-~~~~i 1535 (2058)
++.| .+.+...+..++.+|..++.++++. ..-. -...+|.|.+++.+.++ .|++.|+.+|..++..+ ++++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9874 5678889999999999999855432 1111 25789999999987654 59999999999988632 11111
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
|.. +. -...+|.|...+.+.+..+++.|+.++.+++. ++++....
T Consensus 256 ------------------~~~---i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~ 300 (354)
T 3nmw_A 256 ------------------RQI---LR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEA 300 (354)
T ss_dssp ------------------HHH---HH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred ------------------HHH---HH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 111 00 01246777777888888899999999999874 23222222
Q ss_pred hH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1616 yl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.. ...+|.|..++.+++..+|+.|+.+|..++..-+..|
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 22 3578999999999999999999999999997654443
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.40 E-value=4.2e-06 Score=99.76 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=141.6
Q ss_pred HHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC
Q 000143 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2058)
Q Consensus 1777 lp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~ 1856 (2058)
+| +.+.+.+.+|..|..+++-+..++....... .+++ ....++ .....+.....|.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~----------~~~~~~-----~~~~~lkk~l~Ds 67 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDD----------NIQIYW-----RDPTLFAQYITDS 67 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCTT-----SCTHHHHHHTTCS
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchh----------HHHHHH-----HHHHHHHHHhccc
Confidence 45 6778899999999999998888753211000 0000 000011 1222333456799
Q ss_pred CHHHHHHHHHHHHHHHhhCh------hhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHh
Q 000143 1857 SLSVRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~------~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~ 1929 (2058)
+..|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++...+. ...+++.+.
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~ 145 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVI 145 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 99999999999999886443 23445667777777754 8999999999999999888875432 345667778
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhChhh--hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1930 ~~l~d~~~~vR~~a~~aL~eii~~~~~~~--l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
.++++.+|.+|..++..|..++...|... ..+.++.+++.+.+++.|+|++||++|..+++.++.++|.
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999998877543 3445677888888999999999999999999999998885
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.39 E-value=1.4e-05 Score=91.96 Aligned_cols=182 Identities=17% Similarity=0.229 Sum_probs=140.4
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-------hh
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 1534 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-------~~ 1534 (2058)
.+...+.+.+|+.+..+++.|.......++.+...++-+++-+.-.+.|+|+.|-..+++.|..+...+.+ .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 34556778899999999999999888888777777766666655566799999999999999998765542 23
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~ 1614 (2058)
...++|.|+..+.|+.+.+|+.+..+... ...+ .....+.+.+..++++.++++|..++..++.+....|-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~--l~~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNV--LSDV--VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHH--HHHH--HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHH--HHHH--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 57899999999999999888655544431 0001 123457888888999999999999999988887754442
Q ss_pred hhHhhhh---HHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1615 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1615 pyl~~ll---~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
| ...+ |.+...+.|++..||.+|..++..+....|+.
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 1 2356 88889999999999999999999999999887
No 92
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.36 E-value=1e-05 Score=96.43 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhh---H-HhHHHHHHHhc
Q 000143 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQG---V-KLVLPSLLKGL 1467 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~---v-~~llp~Ll~~L 1467 (2058)
..|..|+..|..+++..... ..+. ...+|.++. .+..+++.||..|+++++.++...+... + ...+|.|+..+
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56777888777777643310 1111 246788888 9999999999999999999987654321 2 36889999999
Q ss_pred cC-CChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHH
Q 000143 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPT 1541 (2058)
Q Consensus 1468 ~~-~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~ 1541 (2058)
.+ .+..+|..|+.+|+.++.+.+....... ...+|.|..+|+++++.|+..|+++|..++..-.+ ..+ ...+|.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 84 5788999999999999987765433322 36899999999999999999999999999876221 122 468899
Q ss_pred HHhccCCCChhHH-HHHHHHHh
Q 000143 1542 LLMGLTDPNDHTK-YSLDILLQ 1562 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr-~al~~L~~ 1562 (2058)
|+..+..++..++ .++.+++.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHH
Confidence 9999998887776 46666554
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.29 E-value=1.7e-05 Score=97.16 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=155.6
Q ss_pred CHHHHHHHHHhhHhhHhhcc---cch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---cccchhchHHHH
Q 000143 1313 SEAVQRAVSSCLSPLMQSMQ---DEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATL 1383 (2058)
Q Consensus 1313 ~~~V~~av~~~L~~l~~~~~---~~~---~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~---~~l~~~~il~~L 1383 (2058)
+..+|+.++.+|..+..... ..+ ...++.++..|. +++..++..|+.+|..+..+-+. ..+.....+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35688888888888764321 111 245777777554 56789999999999999764111 122234678888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--hhhh
Q 000143 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2058)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~----~VR~aA~~al~~l~~~l--~~~~ 1455 (2058)
.+.+....+...++.|+.++..++......-.... ...+|.|...+.+.++ .+++.|..++..++... .++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88754434788899998999888763321112222 3588999988886654 58898999998887521 2221
Q ss_pred ---H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1456 ---v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
+ ...+|.+++.|.+.+..++..|+.+|+.++...+++..... ...+|.|.+++.+.++.+|+.|+++|..++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 34789999999999999999999999999876555432211 36899999999999999999999999999876
Q ss_pred cC
Q 000143 1530 IK 1531 (2058)
Q Consensus 1530 ~~ 1531 (2058)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.22 E-value=1.3e-05 Score=95.52 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhhhCcc-ccchhchHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHH
Q 000143 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2058)
Q Consensus 1353 ~vR~~Aa~~L~~l~~~~g~~-~l~~~~il~~L~~-~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~ 1428 (2058)
..|..|...|..++...... .+.....+|.+.. .+.+. ++.+|+.|+.+++.++..-.. ....+. ..+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 45666777777766543211 1112255677777 77766 899999999999999864321 222332 478888888
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHH
Q 000143 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2058)
Q Consensus 1429 l~-D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip 1502 (2058)
+. +++..+|..|.+++..++...++. .+ ...+|.|...+.+.+..+|..|+.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 458899999999999998755442 23 35789999999999999999999999999988664422211 36889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.|+.+|.++++.||..|+.+|+.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.00 E-value=0.00039 Score=76.05 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=160.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----cccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCccc
Q 000143 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~----~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k 1812 (2058)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.++-..|+++++.++..+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v------ 106 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV------ 106 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC------
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC------
Confidence 36677888899999999999999999998874 33356779999999999999999999999999997321
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 000143 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2058)
Q Consensus 1813 ~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~ 1892 (2058)
-++++.+..+..++.....+.++.++..+...++.+-. ....+.+.+.+.+
T Consensus 107 -----------------------pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~s 157 (265)
T 3b2a_A 107 -----------------------PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINE 157 (265)
T ss_dssp -----------------------CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHH
Confidence 02334455566666666668888899999888887611 1334556666666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHH
Q 000143 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2058)
Q Consensus 1893 ~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~ 1971 (2058)
.+.+.+..++.+|..++-++...-++. ++..++.-+...++++|+.++.-+..++-+++..-=.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 679999999999999999998877643 5677777777888888999999998888877654222223333344444444
Q ss_pred HHh-cCCCHHHHHHHHHHHH
Q 000143 1972 TAL-CDSILEVRESAGLAFS 1990 (2058)
Q Consensus 1972 ~~L-~D~d~~VR~~Aa~a~~ 1990 (2058)
... -...|.+|.-|-..-.
T Consensus 238 ~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHH
Confidence 444 5678888888854433
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.95 E-value=0.00088 Score=73.31 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=142.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh--hh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~-~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~--~~ 1454 (2058)
+.+..+...+.++ |+.++..++++++.+....+..+ ...+..++|.++..+.++++.|--.|.+|++.+....+ ++
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566667777665 99999999999999998875433 34577899999999999999999999999999997654 46
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
++..+...+..-+.+++.-.+..+.+.+|.+- .....+.++..+..++...++.|+.+|..++-.++...+++.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 67888888888889999999999999999881 222335677778888888899999999999999999877764
Q ss_pred -HHhHHHHHHhccCCCChhHH-HHHHHHHh
Q 000143 1535 -IASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2058)
Q Consensus 1535 -i~~lvp~Ll~~l~d~~~~vr-~al~~L~~ 1562 (2058)
+..++.-+-..+..+++.++ .|++.+-.
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46666666777777788776 47776654
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.90 E-value=8.3e-05 Score=89.88 Aligned_cols=282 Identities=10% Similarity=0.025 Sum_probs=133.2
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
...+.+.+.+.+.+++...|+.....+..++.. +++. + -+++.+.+-++|+++.+|..|+.+|+.+.. ...+
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~---i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~ 137 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV---I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STML 137 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG---G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH---H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHH
Confidence 456777888888999998888877777766654 2221 2 556777888889999999999998888753 1122
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
+. +.+.+.+.+.|+++.||+.|+-+...+... .|+
T Consensus 138 ~~---------------------------------------l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe---- 172 (355)
T 3tjz_B 138 QA---------------------------------------IERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD---- 172 (355)
T ss_dssp HH---------------------------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----
T ss_pred HH---------------------------------------HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----
Confidence 33 444555566666666777766665555431 221
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2058)
....+++.+..++.|.++-|...|..++..+... +...+..+++.+.+. .-.++-........++.++..-.++.-.
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kLv~~l~~~--~l~~~~~q~~llr~l~~~~~~d~~~~~~ 249 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKMISKFTRH--GLKSPFAYCMMIRVASRQLEDEDGSRDS 249 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHSS--CCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHHHHHHhcC--CCcChHHHHHHHHHHHHhccccchhhHH
Confidence 2345677777788888888876555555555432 111222333333221 0001111111111111111110011124
Q ss_pred HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhc
Q 000143 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ 1775 (2058)
.+++.+...+++.++.|--.++.++..+...-.. .+......+...+..+++++|-.+++.+..++.... ..+..
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~ 324 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTA 324 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHH
Confidence 5666666777788888888888877766552222 223345556666777788899999999998876543 45556
Q ss_pred hHHhHhhhcCCCCHHHHHHHHHH
Q 000143 1776 LLPAVEDGIFNDNWRIRQSSVEL 1798 (2058)
Q Consensus 1776 llp~L~~~l~d~~~~vR~sav~l 1798 (2058)
.-..+++++.|.|..|+.-|+..
T Consensus 325 ~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 325 CNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp -----------------------
T ss_pred HHHHHHHHccCCcHhHHHHHHHH
Confidence 67788889999988877766543
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.84 E-value=3.5e-06 Score=87.91 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
...-++.+...+.|+++.||..|..+++.+. .. -++.+.+.+.+++|.+|..++.+||.+..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----ST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3455677888899999999999988877552 22 14888899999999999999999998752
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~ 1561 (2058)
+..++.|...++|+++.||..|+++|+.++. ...+|.|...+.|++..+| .+..+|.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2567788888999999999999999999863 2456777777788877776 4555443
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.83 E-value=3.4e-06 Score=96.87 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=102.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~l 1421 (2058)
++..+..++++.+|..++..+ ++. .+...++|+ ++.+|..+...+ +.
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~L-------~~--------- 100 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYRL-------PR--------- 100 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTTS-------CS---------
T ss_pred HHHHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHHC-------CH---------
Confidence 344455666788888777643 111 122334444 777887765432 21
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
+.+...++|+++.||.++...+ +.. .+...+.|++|.+|.+++..+ +. .
T Consensus 101 -~~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~~-------~-- 149 (244)
T 1lrv_A 101 -EQLSALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------PP-------G-- 149 (244)
T ss_dssp -GGGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------CG-------G--
T ss_pred -HHHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------CH-------H--
Confidence 2345567788888887776532 211 123335677788877766521 11 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPI 1580 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~ 1580 (2058)
.+..+++|+++.||.++...+ .. +.+...+.|+++.||. ++..+. .+.
T Consensus 150 -~l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l~----------------~~~ 198 (244)
T 1lrv_A 150 -RLFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRLR----------------GDD 198 (244)
T ss_dssp -GGGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHCC----------------GGG
T ss_pred -HHHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhCC----------------HHH
Confidence 223456778888887776651 11 2334556777777763 332210 123
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1581 L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+...++|.+|.||..++..++ .+.+..+ .|++|.||..+...||
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 445567777777776654321 1334344 7777777777766554
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.75 E-value=0.00046 Score=83.42 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=153.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+...+.+.+.++ |...|.-+...+..+++... -+.-+...+.+.+.|+++.+|-.|..++..+. .++-++.
T Consensus 69 lf~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~-----e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~---~~~m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAE-----DVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT---DSTMLQA 139 (355)
T ss_dssp HHHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSS-----CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC---CTTTHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC---CHHHHHH
Confidence 444556667766 78888877776666555421 12256678888999999999999998888773 4455678
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIAS 1537 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ 1537 (2058)
+.+.+.+.+.|.+..+|+.|+.+...+....|+... ..++.+.++++|.++.|...|..++..+... ++ .+..
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~--d~~a~~k 213 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN--DRLAVSK 213 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh--chHHHHH
Confidence 889999999999999999999999999888887654 4667788899999999999888888888653 22 3455
Q ss_pred HHHHHHhc-cCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMG-LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~-l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
+++.+.+. +.+|-..+ .-+..+.. +....+...-..+++.+...++..+..|..+|+.++-.+... ....
T Consensus 214 Lv~~l~~~~l~~~~~q~-~llr~l~~--~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~--~~~~---- 284 (355)
T 3tjz_B 214 MISKFTRHGLKSPFAYC-MMIRVASR--QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC--SAKE---- 284 (355)
T ss_dssp HHHHHHSSCCSCHHHHH-HHHHHHTC--C-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHhcCCCcChHHHH-HHHHHHHH--hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC--CHHH----
Confidence 56655442 21221111 22222221 222111122345777888888888999999988888765441 1111
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
+...+..+...+..+++++|..|.+.+..++..-
T Consensus 285 ~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 285 LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 2234455566677788899999999888887643
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.74 E-value=1.3e-05 Score=92.00 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=126.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHh
Q 000143 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2058)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~ 1584 (2058)
.+++|+++.||..+...+. ...+...+.|++..||. +...+. .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L~----------------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRLP----------------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTSC----------------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHCC----------------HHHHHHH
Confidence 4568999999999988641 12356678999999984 332211 1245667
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHh
Q 000143 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2058)
Q Consensus 1585 L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~ 1664 (2058)
++|+++.||..++.. + .. +.+..++.|+++.||..++..+ +. .++.
T Consensus 107 l~D~d~~VR~~aA~~---l----~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADR---L----PL------------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHH---S----CT------------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGG
T ss_pred HcCCCHHHHHHHHHh---C----CH------------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHH
Confidence 899999999987652 1 11 1234557899999999988732 22 1334
Q ss_pred hcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHH
Q 000143 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2058)
Q Consensus 1665 ~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~ 1744 (2058)
.+..|+++.+|..++.. ++.+ .+...+.|+++.||..++..+ + .+.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------R----------GDDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHH
Confidence 55568889999988775 2222 233566889999999888642 1 145677
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHH
Q 000143 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2058)
Q Consensus 1745 ~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~ 1800 (2058)
++.|++..||..+..++. .+.|... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999999888753 2455555 8999999999876544
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.74 E-value=2.3e-06 Score=89.22 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=88.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
.-.+.+...++++ ++.+|..|+.+++.+ +. + -++.++..+.|+++.||..|..+++.+.. +
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------E 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------H
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------H
Confidence 4456677777776 788898887766543 21 1 14778888999999999999999887632 3
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2058)
..++.+...+.|++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|+++|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 457888888899999999999999998752 3567888889999999999999999865
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.54 E-value=0.02 Score=73.21 Aligned_cols=185 Identities=19% Similarity=0.215 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~-~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
...+.++.+.+.+.++.-...||.|..+|..+.+.+....- ..-++.+...++++ +|...-..++..+..+..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg--~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~---- 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG--IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS---- 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH--HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHC----
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh--hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhC----
Confidence 35688999999999988899999999999999876532211 13356666666543 344433333333322211
Q ss_pred cchhhHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~--------VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~ 1484 (2058)
.|+++. ..+.+.+-.+.+... ..-++.++..+++.+..+|..++++|..
T Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 92 -----------------NDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp -----------------CC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------CCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111110 011112222222211 3567889999999999999999999999
Q ss_pred HHhhChhhHhhhh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH------hHHHHHHhccCCC
Q 000143 1485 MAYCAPQQLSQCL---PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA------SLVPTLLMGLTDP 1549 (2058)
Q Consensus 1485 la~~~p~~l~~~L---~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~------~lvp~Ll~~l~d~ 1549 (2058)
++...|+....++ |.-++.|+.+|.|++..+|..++-.|..+... +++++ ..++.|+..+...
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHHHHHhccHHHHHHHHHhc
Confidence 9999988766654 46789999999999999999999999999874 45443 3456666665543
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.50 E-value=0.048 Score=73.09 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=97.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QML-PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~ll-p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++|.+.. +++. ++..|..|+.++..|++.. .....+. .++ +.+..++.|++..||.+|..+++.++...+.+
T Consensus 35 ~i~Pll~~-L~S~-~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKD-LKSP-DAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHH-HSSS-CCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHH-cCCC-CHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 56776654 6766 8899999999999998632 2222222 344 45566799999999999999999987654433
Q ss_pred hH-----HhHHHHHHHhccCC--------------C-------hHHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHH
Q 000143 1455 GV-----KLVLPSLLKGLEDK--------------A-------WRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEV 1507 (2058)
Q Consensus 1455 ~v-----~~llp~Ll~~L~~~--------------~-------~~~R~~a~~~Lg~la~~~p~~l~~~-L~~Iip~L~~~ 1507 (2058)
.. ..++|+|...+... . |..-..++.+|..++++..+.+... -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 22 34677776655311 0 1122345677888887776544321 12556666666
Q ss_pred hcC---CCHHHHHHHHHHHHHHHhh
Q 000143 1508 LTD---THPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1508 L~D---~~~~VR~aA~~aL~~l~~~ 1529 (2058)
|.+ ....|+.+|+++|..+.+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 532 3478999999999998774
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.38 E-value=0.0034 Score=69.84 Aligned_cols=145 Identities=18% Similarity=0.170 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~ 1415 (2058)
.+.+..+...|..++...+|..|+..|+.. . . ...+++.+...+.++++|.+|+.+..+++.++...+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~--~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----K--DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----T--SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----C--cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 345567778888888899999999977766 2 1 23788999885555559999999999999888644421
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh-hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~-~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
..++.+..-..|++..||..|.+.+........ ......++|.+.....|+++.+|++....|..+++..|+-+.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 256777788999999999999888654322211 122366778777788899999999999999999887776544
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.26 E-value=0.46 Score=60.82 Aligned_cols=478 Identities=16% Similarity=0.172 Sum_probs=247.7
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC---hhHHHHHHHHHhccccccCChhhH
Q 000143 1499 KIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1499 ~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~---~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
+-++.|..-+++ .-.+=|++|+.+|..+++..+...-..-+|.++..+.+.. +.++.++++|... |....+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l-~~~~~~~~~- 98 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI-ISNDEEEEV- 98 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH-HCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH-hCCCCcccc-
Confidence 445555554443 3477799999999999876654444455677777765442 2345666666431 111100000
Q ss_pred hhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1575 ALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~v-r~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
. +.++.. ...+...-..+. .+ +.-++.|..+++..+..+|-.+.+.|..++..-++.
T Consensus 99 ~-----------~~~~~~~~~~~~~~~d~f~---~~--------~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~ 156 (651)
T 3grl_A 99 E-----------ENSTRQSEDLGSQFTEIFI---KQ--------QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ 156 (651)
T ss_dssp --------------------CHHHHHHHHHH---HS--------THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred c-----------ccccccchHHHHHHHHHHH---cC--------CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH
Confidence 0 000000 000011111111 11 245788888999999999999999999999876653
Q ss_pred ------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCC----hhHHHHHHHH
Q 000143 1654 ------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQR----ASVRDGYLTL 1719 (2058)
Q Consensus 1654 ------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~----~~vR~~al~~ 1719 (2058)
.-|.-++.|++.|.+ .....|..+...|..+...-..- .++..++.+++.+.... ..+-+-++.+
T Consensus 157 ~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 157 VQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 245789999999984 45558998888888776543211 23455666666665543 3555666777
Q ss_pred HHHhHHHhchhHHHhHH--HHHHHHHHhccCCCH------HHHHH---HHHHHHHHHHHhcc---c-----ch--hchHH
Q 000143 1720 FKYLPRSLGVQFQNYLQ--QVLPAILDGLADENE------SVRDA---ALGAGHVLVEHYAT---T-----SL--PLLLP 1778 (2058)
Q Consensus 1720 l~~la~~~g~~f~pyl~--~ilp~Ll~~L~d~~~------~VR~~---a~~al~~lv~~~~~---~-----~l--~~llp 1778 (2058)
+..+...-... ..|+. ..+|.+...+..+++ ..... ++..++.++..-+. . .+ ..+++
T Consensus 236 l~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~ 314 (651)
T 3grl_A 236 LQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQ 314 (651)
T ss_dssp HHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHH
Confidence 77776542111 11221 134444455542221 12122 33444444332111 0 11 12566
Q ss_pred hHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHh-Ch-hhHHHHHHHHHHhh-
Q 000143 1779 AVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL-GR-DKRNEVLAALYMVR- 1853 (2058)
Q Consensus 1779 ~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~L-g~-~~~~~vL~~L~~~~- 1853 (2058)
.+.+.+... ...+|..++.++++++.... .....+.+.- +. ..+..++..+....
T Consensus 315 ~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--------------------~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 315 QLCTILMATGVPADILTETINTVSEVIRGCQ--------------------VNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--------------------HHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 677766544 67899999999999752110 0000000000 00 00112222232222
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHH--------------HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---
Q 000143 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL--------------MNTLISSLASSSSERRQVAGRALGELVRKL--- 1916 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L--------------~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l--- 1916 (2058)
......+|-+|..+++.++.+-+..-..+..++ -..+...+-+.++-.--.|+-.+..+...-
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 334578899998888888754432111111111 011223333333322222333444433211
Q ss_pred -------------CcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcC----
Q 000143 1917 -------------GERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD---- 1976 (2058)
Q Consensus 1917 -------------g~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D---- 1976 (2058)
|+. .-.+++.+...+. +.++.++.+-..-|..|+-.+ +.++.+|+ ..-++.|...+.+
T Consensus 455 K~~~l~v~l~~~~ge~-~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~-p~AV~dFL~~~s~l~~L~~~i~~~~~~ 532 (651)
T 3grl_A 455 KEQLLRVQLATSIGNP-PVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNC-PIAVTHFLHNSANVPFLTGQIAENLGE 532 (651)
T ss_dssp HHHHTTCBCCCCTTCC-CCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHSTTHHHHHHHHHHSCCCH
T ss_pred HHHHHhCcccccCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCC-hHHHHHHHcCCchHHHHHHHHHhccCc
Confidence 111 1234444444443 345666666666667676555 55777777 4456777776643
Q ss_pred CCHHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 000143 1977 SILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~~----~~~~ilp~Ll~~L~~~~~~~~al~aL~~i 2028 (2058)
.+.-|+-.++.-+|.+.+.-.++ ....+.+.+.+.+. +++-+.-+.++
T Consensus 533 ~~~lvqGL~a~LLGi~yef~~~~~~~~~R~~l~~ll~~riG----~d~y~~kl~~l 584 (651)
T 3grl_A 533 EEQLVQGLCALLLGISIYFNDNSLETYMKEKLKQLIEKRIG----KENFIEKLGFI 584 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCCGGGCHHHHHHHHHHHTC----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccCCCcCccCHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 24568888999999988754332 22345555555553 44444444443
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.84 E-value=0.018 Score=65.42 Aligned_cols=198 Identities=15% Similarity=0.045 Sum_probs=121.7
Q ss_pred HHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh---
Q 000143 1422 LPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--- 1492 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~--~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~--- 1492 (2058)
+|.+...+..+++ .++..|..++..+....++. .+ ...+|.|++.|.+++..++..|+.+|..++...++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777776666 88888888888877543332 23 357899999999999999999999999999865532
Q ss_pred HhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccC
Q 000143 1493 LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~--~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~ 1569 (2058)
+.. ...+|.|+++|. ..+..+++.|+.+|-.++..-.+. ..+.-+|.|...+..|. ....
T Consensus 90 I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~---------------sG~~ 152 (233)
T 3tt9_A 90 VAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPF---------------SGWP 152 (233)
T ss_dssp HHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHH---------------HCCC
T ss_pred HHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccc---------------cCCc
Confidence 222 368899999997 468999999999999987643221 11223344433322110 0000
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhC------CCCHHHHHHHH
Q 000143 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLV------DPIPEVRSVAA 1640 (2058)
Q Consensus 1570 ~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~------d~~~~vR~~a~ 1640 (2058)
+... .+..+..+.+++..|..++.+++.. ++ +.+.- .+.+++.|..+++ +.+...++.+.
T Consensus 153 ~~~~--------~~~~~~~~~~v~~na~~~L~nLss~--~~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v 221 (233)
T 3tt9_A 153 EGDY--------PKANGLLDFDIFYNVTGCLRNMSSA--GA-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCV 221 (233)
T ss_dssp GGGC--------CCCCTTCCHHHHHHHHHHHHHHTTS--CH-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cccc--------ccccccchHHHHHHHHHHHHHHhcC--CH-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHH
Confidence 0000 0000113567888888888888752 21 11111 1235555555543 23445677777
Q ss_pred HHHHHHH
Q 000143 1641 RAIGSLI 1647 (2058)
Q Consensus 1641 ~aLg~l~ 1647 (2058)
.+|..+.
T Consensus 222 ~~L~nLs 228 (233)
T 3tt9_A 222 CILHNLS 228 (233)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776664
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.71 E-value=0.067 Score=60.74 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=98.8
Q ss_pred hHHHHHHHhccCCCh--HHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~--~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
..+|.+.+.|.+++. ..+..|+..+..++...++.-.. .-...+|.|+.+|..+++.+|..|+++|..++.. +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE--DND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHH
Confidence 357889999998877 88888889999999876542111 1136789999999999999999999999999752 111
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.+.++.. .--+|.|.+.+. ..+.++++.|+.++.+++.. .+ .-
T Consensus 86 ------------------nk~~I~~---------------~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~--~k 129 (233)
T 3tt9_A 86 ------------------NKLEVAE---------------LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DK--LK 129 (233)
T ss_dssp ------------------HHHHHHH---------------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GG--GH
T ss_pred ------------------HHHHHHH---------------cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hh--hH
Confidence 1111111 113455556665 35677888888778777652 11 11
Q ss_pred hhhHhhhhHHHHHhhC----------------CCCHHHHHHHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLV----------------DPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~----------------d~~~~vR~~a~~aLg~l~~ 1648 (2058)
......-+|.|...+. ..+.+++..|..+|..++.
T Consensus 130 ~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 1122233444444321 1256888888888888864
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.53 E-value=0.013 Score=65.22 Aligned_cols=140 Identities=16% Similarity=0.091 Sum_probs=108.9
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
.+.+++....+.+++..+||..|+..||.+ . ..+++++.+...+..|..+.+|..++.++++++...+++ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 345677777888899899999999988877 2 236788877766777999999999999999998766665 4
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
.++.+..-..+++..||..+....--.+. ...+....+.++|.+-....|++..||.+...+++.+.+.
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTN--RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGG--STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhc--cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 56667777889999999998876533222 1234445667889999999999999999999999887543
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.71 E-value=0.012 Score=79.00 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~ 2001 (2058)
.+++|.+.. +++++++.|.++|.++++++.......+..+.+.+.+.+..++.|++.+||.+|+.+|+.++...|+...
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467887765 8889999999999999999864333333223233445667789999999999999999999988887544
Q ss_pred H-----HHHHHHHHhcC
Q 000143 2002 D-----EIVPTLLHALE 2013 (2058)
Q Consensus 2002 ~-----~ilp~Ll~~L~ 2013 (2058)
+ .++|+|+..|+
T Consensus 113 ~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 4 48888888774
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.73 E-value=2.8 Score=51.41 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=85.2
Q ss_pred hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCH
Q 000143 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
...+.-+++-+..+...+.. .-++-+..++..+.|.+..+|..++..+-.+|.. .++.++...|.++|..+++
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccch
Confidence 33555666666665554432 3356667778888888999999888877777654 3688899999999998888
Q ss_pred HHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
.-+..+-+++..++..-....+..++..+..+ +..+|..++..+..=+
T Consensus 115 ~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~----~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAKGTLGGLFSQILQG----EDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHccc----chHHHHHHHHHHHHHH
Confidence 77888888888887665554444455555553 5688888777776654
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.38 E-value=13 Score=45.60 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~ 1471 (2058)
+...++-|...+.... +.|...-.+.+..+++.+.|++..||..|...+-.++.. +.+.++...|.+.|..++
T Consensus 41 ~~k~K~LaaQ~I~kff----k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFF----KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHG----GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 4555554444333222 245666778899999999999999999999988888765 557888888899999888
Q ss_pred hHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhH-HhHHHHHHhc
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEI-ASLVPTLLMG 1545 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i-~~lvp~Ll~~ 1545 (2058)
.......-.+|-.+....|+. +...+..| .. .+..||..++.-|..-...+.. ++. .-++..+.+.
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i----~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~ 185 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTLGGLFSQI----LQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKV 185 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHH----HH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHHHHH----cc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHH
Confidence 888888888888888877764 22222222 22 3578998766555443333322 233 2344455555
Q ss_pred cCCCC
Q 000143 1546 LTDPN 1550 (2058)
Q Consensus 1546 l~d~~ 1550 (2058)
+.|-+
T Consensus 186 L~DVT 190 (507)
T 3u0r_A 186 LEDVT 190 (507)
T ss_dssp TTSCC
T ss_pred hcccc
Confidence 65543
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.34 E-value=14 Score=42.25 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHH
Q 000143 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 1514 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~ 1514 (2058)
..+-........++-+-.+.-.+++++.+++...+.+..+|+-.+..+...+...+ ...+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHH
Confidence 45555666666655444555668889999887778888999999998888875443 45667888888899999999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCC--hhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHH
Q 000143 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~--~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~ 1591 (2058)
|.+.++.+...+.. .+++.+ .+++ +....+.+.+. .+-..+...+...+..
T Consensus 106 V~K~~I~~~~~iY~------------~~l~~i~~~~~~~~~~~~~W~~m~--------------~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYK------------NGLQYLCSLMEPGDSAEQAWNILS--------------LIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHTTSSSCCHHHHHHHHHHH--------------HHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHhcCCCCcchHHHHHHHHH--------------HHHHHHHHHHccCCcc
Confidence 99999988877643 223322 2222 11222333222 1223344455667788
Q ss_pred HHHHHHHHHHHHHh
Q 000143 1592 TKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~ 1605 (2058)
+|..+.+.+..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99888888887654
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.68 E-value=2.2 Score=59.75 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhh-------hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000143 1432 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2058)
Q Consensus 1432 ~~~~VR~aA~~al~~l~~~l~-------~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L 1504 (2058)
.++.+|.++.-+++.++...- .+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 456788888878877775432 22345566666667777777788889999999864 2445555
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCC--ChhHH-HHHHHHHhccccccCChhhH
Q 000143 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~vr-~al~~L~~~~f~~~~~~~~l 1574 (2058)
.+++. +...+||.+|++||..++.. .| ..+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DP--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CH--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhh--ch--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 22468999999999999753 22 22334455555444 34567 566655431 2444
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
..+..+....-.|++..|+......+.++++
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 4444444445567888888887777777776
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.60 E-value=2.2 Score=46.40 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCC---CHHHHHHHHHHHHHHHHhhcccC---ccchHHHHHh
Q 000143 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLD 1664 (2058)
Q Consensus 1591 ~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~---~~~vR~~a~~aLg~l~~~lg~~~---~~~llp~L~~ 1664 (2058)
..-....+.+..+.. +..-.+.||+..++|.+..++... ...+|+.|++.++.++...|..| .+.++..+.+
T Consensus 61 ~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 61 EVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 333334444555544 344578999999999999886431 22799999999999999998763 2344444444
Q ss_pred hccc-CCChHHHhhHHHHHHHHHHHhchhHHHHhh-HHHH
Q 000143 1665 ALKS-DNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDII 1702 (2058)
Q Consensus 1665 ~L~~-d~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-p~Ll 1702 (2058)
.+.+ .......-||..+|.. +|.+.++.++ |.+-
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence 4432 2445566677777764 4555444433 5543
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.64 E-value=22 Score=40.55 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHh-hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChh
Q 000143 1860 VRQAALHVWKTIVA-NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS 1938 (2058)
Q Consensus 1860 VR~aA~~~l~~lv~-~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~ 1938 (2058)
.+-..+.-...++- ..|..+.++++.+++ ...+++.++|...++-+++.++. .....+.+++.|...++|+++.
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~----~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLS----LAHDSNMEVRKQVVAFVEQVCKV-KVELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHG----GGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 33334444445432 345444455555444 45788999999999999999865 4567889999999999998888
Q ss_pred HHHHHHHHHHHHH-------HhhCh-----hhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh--------
Q 000143 1939 RRQGVCIGLSEVM-------ASAGK-----SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------- 1998 (2058)
Q Consensus 1939 vR~~a~~aL~eii-------~~~~~-----~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~-------- 1998 (2058)
+-..++.+.+.+. ...+. +..=..+..+-..+.......+..||-.|..-+..+......
T Consensus 106 V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~ 185 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKR 185 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 7665555544332 12221 111122344455566666778999999999888887632210
Q ss_pred ------------------hhH----HHHHHHHHHhcCCCcch----HHHHHHHHHHHhhcCCccchhhhhh
Q 000143 1999 ------------------QAI----DEIVPTLLHALEDDQTS----DTALDGLKQILSVRTTAVLPHILPK 2043 (2058)
Q Consensus 1999 ------------------~~~----~~ilp~Ll~~L~~~~~~----~~al~aL~~i~~~~~~~~lp~lip~ 2043 (2058)
..+ ..++..|+..+.++... ..++.+|..|++.+| ...+.+++.
T Consensus 186 ~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP-~~~~rIl~a 255 (257)
T 3gs3_A 186 DGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP-IFMGAVVEA 255 (257)
T ss_dssp TTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred CCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc-HHHHHHHHh
Confidence 011 24556666665554322 356777788888774 344445544
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.51 E-value=5.9 Score=43.08 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHH
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLCE 1408 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l-----~~~~~~~~R~~al~al~~L~~ 1408 (2058)
+...++..+.+.+.. ..|..|...| -...|... ++|++.+.+ .+-+|...=...+.....+..
T Consensus 8 Elq~yf~~It~a~~~----~~r~~aL~sL---~~D~gL~~-----LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~ 75 (196)
T 4atg_A 8 ELQLYFDKILSMIKS----DMKDIAIECL---EKESGLQQ-----LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIK 75 (196)
T ss_dssp HHHHHHHHHHHHHTS----TTHHHHHHHH---HHCSSCTT-----THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHH---hcCCChhh-----hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc
Confidence 345566666666655 2355554444 44555443 455555433 233355555555666666766
Q ss_pred HhcccchhhHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhhh--hhH-HhHHHHHHHhccCC--ChHHHHHHHH
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSA--QGV-KLVLPSLLKGLEDK--AWRTKQSSVQ 1480 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D---~~~~VR~aA~~al~~l~~~l~~--~~v-~~llp~Ll~~L~~~--~~~~R~~a~~ 1480 (2058)
...-.++||+-+++|.++.++-. ....+|+-|...+..++..++. ..+ .++...+.+.+.|+ ...+..+|+.
T Consensus 76 N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~ 155 (196)
T 4atg_A 76 NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALY 155 (196)
T ss_dssp CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 66667899999999999988632 1228999999999999999876 334 67788888887654 6788999998
Q ss_pred HHHHHHh
Q 000143 1481 LLGAMAY 1487 (2058)
Q Consensus 1481 ~Lg~la~ 1487 (2058)
.|..+..
T Consensus 156 GL~~lG~ 162 (196)
T 4atg_A 156 CLSILSK 162 (196)
T ss_dssp HHHHHCH
T ss_pred HHHHhHH
Confidence 8887754
No 118
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=90.27 E-value=22 Score=47.60 Aligned_cols=272 Identities=10% Similarity=0.067 Sum_probs=139.9
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCC--CChhHH--HHHHHHHhcc--
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTD--PNDHTK--YSLDILLQTT-- 1564 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d--~~~~vr--~al~~L~~~~-- 1564 (2058)
......+.|.+...+...+..+...+..+++.++..-+ +-.++.++..+...++. -.+.-| .++.++....
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 34455677777778888899999999999999998655 33446676666667665 333333 5666655411
Q ss_pred ccc-cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC---------------------------------
Q 000143 1565 FVN-TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--------------------------------- 1610 (2058)
Q Consensus 1565 f~~-~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~--------------------------------- 1610 (2058)
.+. ..-..++..++..+..++.-.++.--..+.+.+..++..+.-.
T Consensus 414 lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 414 IVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp HTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred HhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 111 1112334444445555555555555555666776665532100
Q ss_pred -----------------CchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCCh
Q 000143 1611 -----------------KDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672 (2058)
Q Consensus 1611 -----------------~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~ 1672 (2058)
..+..++..++..+..++. +.+..+-.....++..+...+.++.++.++..+.+...+....
T Consensus 494 ~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~ 573 (799)
T 1vsy_4 494 TFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSF 573 (799)
T ss_dssp SCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCC
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh
Confidence 0122333344445555554 2333343445556666666666666666666666655432211
Q ss_pred HHHhhHHHH----HHHHHHHhchhHHHHhhHHHHHhhcc----C------------ChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1673 VERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1673 ~~R~~aa~~----L~~i~~~~g~~~l~~llp~Ll~~l~~----~------------~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
........- ++.++..-+. .+..++|.+...+.. . ...--...+.++..+....|..+.
T Consensus 574 ~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL 652 (799)
T 1vsy_4 574 KEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLL 652 (799)
T ss_dssp CSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHH
Confidence 111111111 2333333333 566666665543321 1 111112234455555555666666
Q ss_pred HhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGLA-DENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~ 1766 (2058)
+|-+.++..+...+. ..+..+-..+..-+..++.
T Consensus 653 ~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~ 687 (799)
T 1vsy_4 653 EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALA 687 (799)
T ss_dssp TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 777777776665553 2333333334444444443
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.66 E-value=26 Score=48.88 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhcc-
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLGR- 1412 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~---~~~~~R~~al~al~~L~~~lg~- 1412 (2058)
..+..+.+.+.+++ ... ..|++.+....... .+..+.+..+...+.++ +++..|+.++.+++.+....-.
T Consensus 356 ~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~~----~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 356 EALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ----QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CCH-HHHHHHHHHhhccC----CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555554443 221 22556665444322 11225666666666432 3678999999999999875321
Q ss_pred --c-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-------CCChHHHHHHHHHH
Q 000143 1413 --L-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------DKAWRTKQSSVQLL 1482 (2058)
Q Consensus 1413 --~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-------~~~~~~R~~a~~~L 1482 (2058)
. -..++..+...+...+...+..-+..++.+|+.+.. +..++.+.+.+. +...++|.+|+.+|
T Consensus 430 ~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 430 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHH
Confidence 1 123455556666666666666677777888776642 234555555553 22457889999999
Q ss_pred HHHHhhChhhHhhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 000143 1483 GAMAYCAPQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQ 1524 (2058)
Q Consensus 1483 g~la~~~p~~l~~~L~~Iip~L~~~L--~D~~~~VR~aA~~aL~ 1524 (2058)
..++...|+...+ .+.+.. .+.+++||.+|+..|-
T Consensus 503 r~~~~~~p~~v~~-------il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 503 RNIAKRDPRKVQE-------IVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp TTGGGTCHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHhhhhchHHHHH-------HHHHHhcCCCCChHHHHHHHHHHH
Confidence 9988665554433 344555 3457999999998774
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=80.83 E-value=44 Score=44.71 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=120.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCcc--
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGER-- 1919 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~---~~~~~R~~A~~~Lg~L~~~lg~~-- 1919 (2058)
+++.+..+....+..+...+..+++.++.-.|....-++|.+++.+...|.. .+.....++.+++..+++.+-..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 3444555666777888888899999998766655567899999999988887 44455567789999998876532
Q ss_pred ---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh----------------------------------------
Q 000143 1920 ---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------------------------------- 1956 (2058)
Q Consensus 1920 ---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---------------------------------------- 1956 (2058)
++..++..+..+++-.|+..-..+...+..++...+-
T Consensus 420 yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~ 499 (799)
T 1vsy_4 420 YRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDD 499 (799)
T ss_dssp GGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCT
T ss_pred cHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccH
Confidence 2344555555666666666555566666555442211
Q ss_pred -----------hhhHhHHhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHH
Q 000143 1957 -----------SQLLSFMDELIPTIRTALC-DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTAL 2022 (2058)
Q Consensus 1957 -----------~~l~~~~~~ll~~L~~~L~-D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al 2022 (2058)
..+.+++..++.-+...+. +.+..+-..-..++..+...+.++-++.++..+.+-..+.. ....++
T Consensus 500 ~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v 579 (799)
T 1vsy_4 500 ELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPN 579 (799)
T ss_dssp THHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1133444555555555553 34444445555566666666666655666666555443211 111122
Q ss_pred HH-----HHHHHhhcCCccchhhhhhhc
Q 000143 2023 DG-----LKQILSVRTTAVLPHILPKLV 2045 (2058)
Q Consensus 2023 ~a-----L~~i~~~~~~~~lp~lip~L~ 2045 (2058)
.. +..+++.+|. .++.++|.|.
T Consensus 580 ~~L~~~~~~a~~~~~P~-~~~~~~p~l~ 606 (799)
T 1vsy_4 580 YELVTIPLAALVRRNNG-LSKELVRTLL 606 (799)
T ss_dssp THHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHH-HHHHHHHHHH
Confidence 12 3444555667 7888888776
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=80.20 E-value=17 Score=40.57 Aligned_cols=141 Identities=7% Similarity=0.011 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 000143 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2058)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~ 1420 (2058)
.++..|..++-.+.|..|+..+....+... ...++.+...+.+..+|.+.+....+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 445556665667777777766654332211 144555666666666898877654334333322 2223
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+.+.+.....|++..+|+.|..++ +........+.+++.+...+.|+++-+|++...+|..++...|+....++
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 556677889999999999987644 22222233456666666688899999999999999999888777655544
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.79 E-value=1.4e+02 Score=36.09 Aligned_cols=200 Identities=11% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p 1416 (2058)
+-+-.+++......+ ..+.....-...++-.-.+..+ .++++.+.+...+. +..+|.-....++..+.. -..
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl--~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~----~~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLL--DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKR----DIE 96 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGG--GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHH----CGG
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHH----HHH
Confidence 344444444433222 3565666666665444334433 37788888777776 788888877777666642 234
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-------hh------hh---HHhHHHHHHHhccCCChHHHHHHHH
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-------SA------QG---VKLVLPSLLKGLEDKAWRTKQSSVQ 1480 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l-------~~------~~---v~~llp~Ll~~L~~~~~~~R~~a~~ 1480 (2058)
++..+++.|...+.|+++.|-+.++.|...+.... +. .. +..+-..++..+++.+..+|..++.
T Consensus 97 l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiK 176 (386)
T 3o2t_A 97 LLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIK 176 (386)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 56788888888889999999888877777664211 11 11 2344455666677788899999999
Q ss_pred HHHHHHhhCh------------------------------hhHhhhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000143 1481 LLGAMAYCAP------------------------------QQLSQCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1481 ~Lg~la~~~p------------------------------~~l~~~L~~Iip~L~~~L~D~--~~~VR~aA~~aL~~l~~ 1528 (2058)
.+..+.-... ..+...-..++..|+..+.++ .+..-.++..+|..++.
T Consensus 177 Fle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak 256 (386)
T 3o2t_A 177 FVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIAR 256 (386)
T ss_dssp HHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 8888773210 112222245666777777653 34444566667766665
Q ss_pred hcCchhHHhHHHHHHhc
Q 000143 1529 VIKNPEIASLVPTLLMG 1545 (2058)
Q Consensus 1529 ~~~~~~i~~lvp~Ll~~ 1545 (2058)
. +..+...+++.+...
T Consensus 257 ~-RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 257 Q-RPMFMSEVIQAYETL 272 (386)
T ss_dssp H-SGGGHHHHHHHHHHH
T ss_pred h-cHHHHHHHHHHHHhh
Confidence 3 334667777777653
No 123
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=76.60 E-value=1.2e+02 Score=35.50 Aligned_cols=170 Identities=13% Similarity=0.171 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHHhh-hCcccc------chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH---
Q 000143 1351 KYGERRGAAFGLAGVVKG-FGISSL------KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ--- 1420 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~-~g~~~l------~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~--- 1420 (2058)
+++.|+.++.....+... .|.... ..++++..|...-++.+ . |+ ..|.+.+.+-+ .++....
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d-i-----Al-~~G~mLRecir-~e~la~~iL~ 162 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE-I-----AL-NCGIMLRECIR-HEPLAKIILW 162 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT-T-----HH-HHHHHHHHHHT-SHHHHHHHHH
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch-h-----Hh-HHHHHHHHHHH-hHHHHHHHhc
Confidence 588888888888887763 222111 12356666666655542 1 11 12222222211 1222221
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---h----hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-
Q 000143 1421 --MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---Q----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2058)
Q Consensus 1421 --llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~----~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p- 1490 (2058)
.+-.+++....++-+|..-|..+++.+...... + ..+.+...+...+.++++-+|+-++.+||.+.-...
T Consensus 163 ~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N 242 (341)
T 1upk_A 163 SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 242 (341)
T ss_dssp SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH
Confidence 222455677778888888888888877654322 1 235677777777889999999999999999986532
Q ss_pred -hhHhhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1491 -QQLSQCLP--KIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1491 -~~l~~~L~--~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
..+..|+. .-+..++.+|+|+...+|-.|...++-|+.
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 33555543 345678889999999999999999988875
No 124
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=69.18 E-value=89 Score=36.64 Aligned_cols=157 Identities=15% Similarity=0.229 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhhChh---hHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHhCcchh---hchHHHH----
Q 000143 1860 VRQAALHVWKTIVANTPK---TLKEIMPVLMNTLISSLASSSSERR-QVAGRALGELVRKLGERVL---PSIIPIL---- 1928 (2058)
Q Consensus 1860 VR~aA~~~l~~lv~~~~~---~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg~L~~~lg~~~l---~~llp~L---- 1928 (2058)
|++..+..+...+.+.+. ....++|.+++.++.--.+..++.| .....++..++.++|+.+. |.++..+
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~T 124 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 124 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444455555555543321 2346677777666654444444444 2356778888888886543 3333222
Q ss_pred hhhcC---CCChhHHHHHHHHHHHHHHhhChhhhH---hHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--hh-
Q 000143 1929 SRGLK---DPSASRRQGVCIGLSEVMASAGKSQLL---SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQ- 1999 (2058)
Q Consensus 1929 ~~~l~---d~~~~vR~~a~~aL~eii~~~~~~~l~---~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g--~~- 1999 (2058)
.++++ ++.|+.|.+-..-|..+...+-+.-+. +....++..+.-+...++++|-+.+...+-.+.+++. +.
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~ 204 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAA 204 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHH
Confidence 23344 356999999888888777665332111 2335667777788899999999999999988887774 21
Q ss_pred -------hHHHHHHHHHHhcCCCc
Q 000143 2000 -------AIDEIVPTLLHALEDDQ 2016 (2058)
Q Consensus 2000 -------~~~~ilp~Ll~~L~~~~ 2016 (2058)
+.-.++..++..|.|..
T Consensus 205 ~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 205 AQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCch
Confidence 23355566666676654
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=67.97 E-value=2.1e+02 Score=34.46 Aligned_cols=221 Identities=15% Similarity=0.151 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHH
Q 000143 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832 (2058)
Q Consensus 1753 VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~ 1832 (2058)
.+-..++-.+.++-.-.+..++.++|.+..+..+.+..+|...++++.+....
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--------------------------- 93 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--------------------------- 93 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---------------------------
Confidence 45556666666554444556778899999888888899999888888776321
Q ss_pred HHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH--------hhCh-----hhHHHhHHHHHHHHHHHhcCCCH
Q 000143 1833 IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV--------ANTP-----KTLKEIMPVLMNTLISSLASSSS 1899 (2058)
Q Consensus 1833 l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv--------~~~~-----~~l~~~l~~L~~~l~~~L~~~~~ 1899 (2058)
..+....+++.|...+.|.+..|-+.++.+...+. .+.+ ....+.+..+-..++....+.+.
T Consensus 94 -----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~ 168 (386)
T 3o2t_A 94 -----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDND 168 (386)
T ss_dssp -----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSH
T ss_pred -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCc
Confidence 01122234444444445555555555544433332 2211 24455666677777777888999
Q ss_pred HHHHHHHHHHHHHHHHhCc-------------ch--------------------hhchHHHHhhhcCCC--ChhHHHHHH
Q 000143 1900 ERRQVAGRALGELVRKLGE-------------RV--------------------LPSIIPILSRGLKDP--SASRRQGVC 1944 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~-------------~~--------------------l~~llp~L~~~l~d~--~~~vR~~a~ 1944 (2058)
.+|..++..+..++..... ++ -..++..|.+.+.++ ++-.-.++.
T Consensus 169 GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~l 248 (386)
T 3o2t_A 169 GIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTAL 248 (386)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHH
Confidence 9999999999988854421 00 013445566666543 221222334
Q ss_pred HHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHH
Q 000143 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI--------LEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLH 2010 (2058)
Q Consensus 1945 ~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d--------~~VR~~Aa~a~~~l~~~~g~~-~~~~ilp~Ll~ 2010 (2058)
.+|+-|+..- + .|...+++.+...-.+.. ..|+...-..|-.+.++.+.. +.+++-..|.+
T Consensus 249 nsLa~Iak~R-P----~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~ 318 (386)
T 3o2t_A 249 GSLANIARQR-P----MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVD 318 (386)
T ss_dssp HHHHHHHHHS-G----GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhc-H----HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Confidence 4566555433 2 356778887776432221 247777777777777755433 33344444433
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=66.95 E-value=2e+02 Score=33.79 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=92.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hccc--chhhH---HHHHHHHHHHcCCCCH------HHHHHH-HHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEK-LGRL--FEPYV---IQMLPLLLVAFSDQVV------AVREAA-ECAA 1444 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~--~~p~l---~~llp~Ll~~l~D~~~------~VR~aA-~~al 1444 (2058)
+++..|...+..= ++..|.-+...|..+... .|.. ...|+ .+++..++.+..+++- ..|++. -+.+
T Consensus 78 dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 78 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4555566655554 788888888877776653 2211 22344 3688888888887653 233333 1122
Q ss_pred HHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000143 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1445 ~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p----~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
..++-. ...+-.+++.++.++..+-..|...+-.+...-. +.+..+....+..+.+++..++--.|..++
T Consensus 157 a~~iL~------~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 157 AKIILW------SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HHHHHH------SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHhc------cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 111110 1233456677888888888778777777664422 345566778888888889999999999998
Q ss_pred HHHHHHHhh
Q 000143 1521 TALQQVGSV 1529 (2058)
Q Consensus 1521 ~aL~~l~~~ 1529 (2058)
+-|+.+.-.
T Consensus 231 KLLgelLld 239 (341)
T 1upk_A 231 KLLGELLLD 239 (341)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 888888653
No 127
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=66.52 E-value=1.3e+02 Score=35.17 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHHHhhhhh---hHHhHHHHH----HHhcc---CCChHHHHHHHHHHHHH
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMSQLSAQ---GVKLVLPSL----LKGLE---DKAWRTKQSSVQLLGAM 1485 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA-~~al~~l~~~l~~~---~v~~llp~L----l~~L~---~~~~~~R~~a~~~Lg~l 1485 (2058)
+++.++..++....+..|..|+.- ..++..++.+++.. .++.++..+ ++.+. ++.+..|..=..+|.++
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 344455444544455555555533 44555555555432 233333333 33444 35688999999999999
Q ss_pred HhhChhhHh----hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1486 AYCAPQQLS----QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1486 a~~~p~~l~----~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
..+|...+- +.+..++..+.-..+++++.|...+...+..+...+.
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 988766532 3456778888888999999999999999887776654
No 128
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=65.25 E-value=2.4e+02 Score=34.11 Aligned_cols=256 Identities=15% Similarity=0.168 Sum_probs=126.3
Q ss_pred cCCChHHHHHHHHHHHHHHhh---ChhhHhhhhhh-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH-HhHHH
Q 000143 1468 EDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPK-IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVP 1540 (2058)
Q Consensus 1468 ~~~~~~~R~~a~~~Lg~la~~---~p~~l~~~L~~-Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i-~~lvp 1540 (2058)
.+.+|..-....+.+..+... .|+....+++. .+-.|+.+++..+++=|......|.++-..+.. +++ ..+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356788877777777777654 23334455544 566788889999999999998888887654321 223 22222
Q ss_pred HHHhccCCC--ChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1541 TLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS-AETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1541 ~Ll~~l~d~--~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s-~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
.+...+.+. ...+.+.++.++. +.+|+.-+- .+-+.-- ...+.- +..++.+..|.
T Consensus 174 if~~fiye~e~~~GIaeLLeilgs------------------IinGfa~PLkeehk~fl---~~vLlP-LHk~~~~~~y~ 231 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGS------------------IINGFALPLKEEHKIFL---LKVLLP-LHKVKSLSVYH 231 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHH------------------HHHHCCSSCCHHHHHHH---HHTTTG-GGGSTTGGGTH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHH------------------HHcccCCCchHHHHHHH---HHHHHH-HHcCCcchhhH
Confidence 222222111 1122233333322 222332211 1111111 111112 23344556666
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHh
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2058)
+++..++...+. .++..-.. ++..++..-- -.+..-...-..-+.+++..+++..+..+
T Consensus 232 ~qL~ycv~qf~e-KDp~L~~~-------------------vi~~LLk~WP-~tns~KevlFL~Ele~iLe~~~~~~f~~i 290 (403)
T 3fga_B 232 PQLAYCVVQFLE-KDSTLTEP-------------------VVMALLKYWP-KTHSPKEVMFLNELEEILDVIEPSEFVKI 290 (403)
T ss_dssp HHHHHHHHHHHH-HCGGGHHH-------------------HHHHHHHTCC-SSCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHH-hCchhHHH-------------------HHHHHHHhCC-CCCcHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 766666665543 22332211 2222222211 11111112233445556655655555444
Q ss_pred hHH----HHHhhccCChhHHHHHHHHHH--HhHHHhchhHHHhHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHH
Q 000143 1698 LPD----IIRNCSHQRASVRDGYLTLFK--YLPRSLGVQFQNYLQQVLPAILDG-LADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1698 lp~----Ll~~l~~~~~~vR~~al~~l~--~la~~~g~~f~pyl~~ilp~Ll~~-L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
+.. +-..+++++..|-+.++..+. ++...+.+.-...++-++|.+.+. -.+-+..||..+..+++.+.+
T Consensus 291 ~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 291 MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 444 444556778888888776662 222222222222334444444443 245678899998888887653
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.79 E-value=87 Score=32.40 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=57.6
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC------CCHHHHHHHHHHHHHHHh
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D------~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..+..+.+.+.+.+..+...|+.+|..+...|+..+...+ ...+..|.+++.+ .++.||..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44455666777888999999999999999999987654322 3456667777764 578999999999999988
Q ss_pred hcC
Q 000143 1529 VIK 1531 (2058)
Q Consensus 1529 ~~~ 1531 (2058)
.++
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 775
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=62.66 E-value=61 Score=33.16 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=56.1
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
+..+..+.+.+.+.+..+...|+.+|..+...|+..+...+ ...+..+.+++...++.|+..+...+...+..++
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 34455566677888888888899999999999987655332 3455555566666789999999999998887765
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.04 E-value=1.1e+02 Score=31.52 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=58.8
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC------CCHHHHHHHHHHHHHHHh
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D------~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..+..+.+.+.+.+..+...|+.+|..+...|+..+...+ ...+..|.+++.+ .++.||..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555666778888999999999999999999987664433 3567777777764 478999999999999888
Q ss_pred hcC
Q 000143 1529 VIK 1531 (2058)
Q Consensus 1529 ~~~ 1531 (2058)
.++
T Consensus 117 ~f~ 119 (148)
T 1mhq_A 117 WFP 119 (148)
T ss_dssp HCT
T ss_pred HcC
Confidence 765
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=58.53 E-value=58 Score=36.56 Aligned_cols=110 Identities=9% Similarity=-0.011 Sum_probs=70.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1379 IAATLREGLADRNSAKRREGAL-LAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al-~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
.++.+...+....+|.+.+... .+++.+...-+. .+.+.+.....|++..+|+.|...+ +.........
T Consensus 96 ~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------~~~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~d~~ 165 (232)
T 3jxy_A 96 HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------LISAYIPKWIASDNIWLQRAAILFQ---LKYKQKMDEE 165 (232)
T ss_dssp GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------GGGGTHHHHHHSSCHHHHHHHHHTT---TTCGGGCCHH
T ss_pred HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------HHHHHHHHHhcCCchHHHHHHHHHH---HHHHhCCCHH
Confidence 3455566666666898766542 333333332111 2345566777888999999887654 2222223345
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
.+++.+...+.|+++-++++...+|..++...|+.+..++.
T Consensus 166 ~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 166 LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 56666677788999999999999999988887776665543
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=55.07 E-value=1e+02 Score=32.44 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=55.9
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh--hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcC
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~--~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
+..+..+.+.+.+.+..+...|+.+|..+...|+..+...+. ..+..+.+++.. .++.||..+...+...+..++
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 445556667788888889999999999999999876553332 355555555554 678999999998888887665
No 134
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=53.28 E-value=47 Score=33.95 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=37.3
Q ss_pred hHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHH
Q 000143 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ 1737 (2058)
+.+.++|+.|+..+++.++.++--++.++.+++..-++.|...+..
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 4568999999999999999999999999999887766666555433
No 135
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=52.19 E-value=83 Score=31.74 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=56.0
Q ss_pred hhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1450 ~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.++...+..++|.|+..|+|.+|.+....+..|..+- ..++|.+.+.++..+..=. .+.|..+...
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 3455667889999999999999998887777766432 2555666666655444322 3455555554
Q ss_pred cCchhHHhHHHHHHhccCCCC
Q 000143 1530 IKNPEIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1530 ~~~~~i~~lvp~Ll~~l~d~~ 1550 (2058)
+..+-...+.|.|......|.
T Consensus 89 ~~~~~~~~l~~eL~rl~~~pt 109 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSSLEI 109 (134)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 444444666677766666663
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.72 E-value=1.6e+02 Score=31.19 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=58.4
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D------~~~~VR~aA~~aL~~l~ 1527 (2058)
-+..+..+.+.+.+.+..+...|+.+|..+...|+..+...+ ...+..|.+++.. .++.||..++..+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345566677788888999999999999999999987655432 2456666666652 46899999999999998
Q ss_pred hhcC
Q 000143 1528 SVIK 1531 (2058)
Q Consensus 1528 ~~~~ 1531 (2058)
..++
T Consensus 128 ~~f~ 131 (171)
T 1juq_A 128 MALP 131 (171)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 8775
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=51.69 E-value=4.3e+02 Score=32.70 Aligned_cols=70 Identities=19% Similarity=-0.012 Sum_probs=48.8
Q ss_pred chHHHHhhhcCC----------CChhHHHHHHHHHHHHHHhhChhh--hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1923 SIIPILSRGLKD----------PSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2058)
Q Consensus 1923 ~llp~L~~~l~d----------~~~~vR~~a~~aL~eii~~~~~~~--l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~ 1990 (2058)
+++..|.+.+.+ .++.+-..||.=+|+++...+... +.. -..-..+++++.++|++||..|..|+.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~--lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK--TGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH--HSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH--cCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 345555665542 246666778888999998875421 111 124567788899999999999999998
Q ss_pred HHHH
Q 000143 1991 TLFK 1994 (2058)
Q Consensus 1991 ~l~~ 1994 (2058)
.+..
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.50 E-value=63 Score=33.06 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=50.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.+..|...+.+. ++++.-.|+..+..+...+|..|...+ ...+.-+...+...++.|++.....+......+.
T Consensus 42 ~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 5666777777765 888888899999999999997665433 2333333333334567888888777776655443
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.63 E-value=1.8e+02 Score=30.01 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=59.3
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d------~~~~VR~~a~~al~~lv 1765 (2058)
-.+.+..|...+.+.++.+...++.++..+..+.|..|...+ ..++..|.+.+.+ .++.||+.++..+....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345667777888899999999999999999999999886544 4577777777754 36789998888777766
Q ss_pred HHhc
Q 000143 1766 EHYA 1769 (2058)
Q Consensus 1766 ~~~~ 1769 (2058)
..|.
T Consensus 116 ~~f~ 119 (148)
T 1mhq_A 116 VWFP 119 (148)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 6654
No 140
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.44 E-value=73 Score=32.51 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=48.7
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh-----cC------CCHHHHHHHHHHHH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-----TD------THPKVQSAGQTALQ 1524 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L-----~D------~~~~VR~aA~~aL~ 1524 (2058)
...++..|+++|.+++|+++.-|+.+|-.++...++.+...+..=+..+-.+. .| ....||..|-+++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47788899999999999999889999998887766654443333222222222 12 22678888887776
Q ss_pred HHHh
Q 000143 1525 QVGS 1528 (2058)
Q Consensus 1525 ~l~~ 1528 (2058)
.+..
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 6643
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=49.13 E-value=4.6e+02 Score=32.37 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=56.7
Q ss_pred HHHHHHHhhChhhHHHhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhCcc--hhh--chHHHHhhhcCCC
Q 000143 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLA------SSSSERRQVAGRALGELVRKLGER--VLP--SIIPILSRGLKDP 1935 (2058)
Q Consensus 1866 ~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~------~~~~~~R~~A~~~Lg~L~~~lg~~--~l~--~llp~L~~~l~d~ 1935 (2058)
..|+.=+..+...--+.+..|...+...-. +.++.+-..|+.=+|++++..+.. ++. ..-..+.+.++++
T Consensus 380 ~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~ 459 (480)
T 1ho8_A 380 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS 459 (480)
T ss_dssp HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC
Confidence 456554443332222444444444422111 246778889999999999988754 232 2345567788899
Q ss_pred ChhHHHHHHHHHHHHHHh
Q 000143 1936 SASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1936 ~~~vR~~a~~aL~eii~~ 1953 (2058)
++++|..|..|+..++.+
T Consensus 460 d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 460 DSRVKYEALKATQAIIGY 477 (480)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.15 E-value=1.1e+02 Score=32.29 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 000143 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1693 ~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~ 1769 (2058)
.-.+.+..|...+.+.++.+.-.++.++..+....|..|...+ ..++..+.+.+.. .++.||+.++..+......|.
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456677777888889999999999999999999999886433 2345555554443 567899988887777666665
Q ss_pred c
Q 000143 1770 T 1770 (2058)
Q Consensus 1770 ~ 1770 (2058)
.
T Consensus 129 ~ 129 (163)
T 1x5b_A 129 K 129 (163)
T ss_dssp T
T ss_pred C
Confidence 3
No 143
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=45.58 E-value=8.3e+02 Score=34.31 Aligned_cols=342 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHH
Q 000143 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD---------------KYGERRGAAFGLA 1363 (2058)
Q Consensus 1299 ~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~---------------~~~vR~~Aa~~L~ 1363 (2058)
+.++.++++.+.-....+|......++.++. ..+....+..+.+.+..+. +...........-
T Consensus 156 ~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~--ds~H~~v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl 233 (1323)
T 3s4w_B 156 KDLTAQMMQLISVAPVNLQHDFITSLPEILG--DSQHANVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQLVM 233 (1323)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSC--GGGHHHHHHHHHHHHHHCSTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhc--chhhHHHHHHHHHHHhcCcchHHHHHHHHHcCCCCHHHHHHHHHHHH
Q ss_pred HHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc------------------------------
Q 000143 1364 GVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL------------------------------ 1413 (2058)
Q Consensus 1364 ~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~------------------------------ 1413 (2058)
..+.....+.++ .++.+|.+....+ .+..++..+-+.+.-.
T Consensus 234 ~~L~s~~~e~LP--~lIkFLL~s~t~~-------~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s 304 (1323)
T 3s4w_B 234 GKLSSVRLEDFP--VIVKFLLHSVTDT-------TSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENS 304 (1323)
T ss_dssp HSTTSSCTTHHH--HHHHHHHHSCSST-------THHHHHHHHHHHHHCC----------------------------CH
T ss_pred HHhccCChhhhH--HHHHHHHHhCCHh-------hHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCcccccc
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHH-----------HHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV-----------QLL 1482 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~-----------~~L 1482 (2058)
-.+....++..+-..+.- +..+.++-.+.+..+-..-....++-++-.++-......-+.-...+ ..+
T Consensus 305 ~~~~~~lild~lks~l~~-~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll 383 (1323)
T 3s4w_B 305 DKDCIVLVFDVIKSAIRY-EKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLL 383 (1323)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred ccchHHHHHHHHHHHHhc-ChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHH
Q ss_pred HHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh-hHHHHHHHHH
Q 000143 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTKYSLDILL 1561 (2058)
Q Consensus 1483 g~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~vr~al~~L~ 1561 (2058)
.....+....+..|++.++...-.++...++.|+.-+......+-..+...+-++++..|+..+...+. .+..|++.|.
T Consensus 384 ~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~ 463 (1323)
T 3s4w_B 384 DSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLL 463 (1323)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q ss_pred hccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHH
Q 000143 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2058)
Q Consensus 1562 ~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~ 1641 (2058)
.....+...-...+..+..+...+.+-+..--++...++..++-. .....-...-+.+.=.+.+.+..++.+.+...+-
T Consensus 464 ~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~-~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGII 542 (1323)
T 3s4w_B 464 ELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFS-QQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGII 542 (1323)
T ss_dssp HHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHH-HCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcC-CCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHH
Q ss_pred HHHHHHHhhccc
Q 000143 1642 AIGSLIRGMGEE 1653 (2058)
Q Consensus 1642 aLg~l~~~lg~~ 1653 (2058)
+--.++..++..
T Consensus 543 Gav~~v~~~~~~ 554 (1323)
T 3s4w_B 543 GAVTMAGIMAED 554 (1323)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHHh
No 144
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=45.03 E-value=2.5e+02 Score=31.29 Aligned_cols=127 Identities=11% Similarity=0.050 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhhhCccccchhchHHHHHHHHh
Q 000143 1310 NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA-FGLAGVVKGFGISSLKKYGIAATLREGLA 1388 (2058)
Q Consensus 1310 ~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa-~~L~~l~~~~g~~~l~~~~il~~L~~~l~ 1388 (2058)
.++..+.|..+...+........++....+..++. ..++|.+-...+ ..++.++.... ..+.+.+...+.
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p------~~~~~~l~~W~~ 141 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHP------ELISAYIPKWIA 141 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCG------GGGGGTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCH------HHHHHHHHHHhc
Confidence 44556666666665554333232222233443333 346788765543 45556655421 124566778888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1389 ~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
++..|..|-+....+ ..........+++.+...+.|++..|+.+..++|..++...+
T Consensus 142 s~~~w~rR~ai~~~l-------~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 142 SDNIWLQRAAILFQL-------KYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp SSCHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCchHHHHHHHHHHH-------HHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 886666665544322 111122334566777788999999999999999999876544
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.19 E-value=1.9e+02 Score=29.75 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=58.2
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d------~~~~VR~~a~~al~~lv 1765 (2058)
-.+.+..|...+.+.++.+...++.++..+....|..|...+ ..++..|.+.+.+ .++.||+.++..+....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345666777888889999999999999999999999885433 3456666666653 46789998888887776
Q ss_pred HHhcc
Q 000143 1766 EHYAT 1770 (2058)
Q Consensus 1766 ~~~~~ 1770 (2058)
..|..
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 66643
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=41.46 E-value=5.8e+02 Score=31.31 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHHHHHHHhh---ChhhHhhhhhh-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1469 DKAWRTKQSSVQLLGAMAYC---APQQLSQCLPK-IVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~---~p~~l~~~L~~-Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
+.+|..-....+.+-.+... .++....+++. .+-.|+.+++..+++-|......|.++-..+
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 193 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 193 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 55787777777777776643 22333344433 5667788888889999998888888876543
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=41.14 E-value=1.1e+02 Score=32.40 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=52.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~D------~~~~VR~aA~~al~~l~~ 1449 (2058)
+.+..|...+.+. ++++.-.|+..+..+...+|..|...+. .++.-+...+.. .+..||+.+.+.+.....
T Consensus 50 ~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566777777765 8999999999999999999976765442 345555555542 357888888887777665
Q ss_pred hhh
Q 000143 1450 QLS 1452 (2058)
Q Consensus 1450 ~l~ 1452 (2058)
.+.
T Consensus 129 ~f~ 131 (171)
T 1juq_A 129 ALP 131 (171)
T ss_dssp HCT
T ss_pred HcC
Confidence 544
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=41.04 E-value=1.7e+02 Score=32.26 Aligned_cols=91 Identities=8% Similarity=-0.102 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000143 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2058)
Q Consensus 1349 ~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~ 1428 (2058)
-+.|.+-...+.+++.++... +..+.+.+.+.+.++..|..|-+....+ .-.-+.+...+++.+-..
T Consensus 101 ~~nWd~~D~~a~~~~~~~~~~------~~~~~~~i~~W~~s~~~w~rR~ai~~~l-------~~~~~~~~~~~~~i~~~~ 167 (220)
T 2b6c_A 101 KAWWDSVDAWRKFFGSWVALH------LTELPTIFALFYGAENFWNRRVALNLQL-------MLKEKTNQDLLKKAIIYD 167 (220)
T ss_dssp TCSHHHHHHHHHHHHHHHHHS------GGGHHHHHHHHTTCSSHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHC------hHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHh
Confidence 457887776666666666543 1235677888888885565565443221 111134556678877779
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1429 FSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1429 l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
++|++..||.+..++|..++...+
T Consensus 168 ~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 168 RTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCChHHHHHHHHHHHHHHHHhhCH
Confidence 999999999999999999876543
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.43 E-value=1.4e+02 Score=31.17 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=53.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFS---DQVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~-Ll~~l~---D~~~~VR~aA~~al~~l~~~l 1451 (2058)
+.+..|...++..+++++.-.|+..+..+...+|..|...+. ..+.- +...+. ++...||+.+.+.+......+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 567777777875458888899999999999999987765442 34444 444442 445689998888877776554
Q ss_pred h
Q 000143 1452 S 1452 (2058)
Q Consensus 1452 ~ 1452 (2058)
.
T Consensus 133 ~ 133 (157)
T 1elk_A 133 R 133 (157)
T ss_dssp T
T ss_pred C
Confidence 3
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=39.18 E-value=5.9e+02 Score=30.74 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1600 VGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1600 l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
++.+... .++.++.+....+...+-.++.+++..|-+.|..-+
T Consensus 275 le~iLe~-~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 275 LEEILDV-IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHTT-CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHh-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 3444443 244666777777778888888888888877765543
No 151
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=36.07 E-value=1.9e+02 Score=29.17 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=50.3
Q ss_pred HhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1688 ALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1688 ~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
.+|.+.+..++|.++.-++|.||.+-..++..|..+ |. .++|.+.+.+...+..-. ...+..++..
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~-------~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH----QS-------IAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT----HH-------HHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc----cH-------hhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 446677889999999999999999988777766543 23 345555555555554322 2223333334
Q ss_pred hcccchhchHHhHhhhcC
Q 000143 1768 YATTSLPLLLPAVEDGIF 1785 (2058)
Q Consensus 1768 ~~~~~l~~llp~L~~~l~ 1785 (2058)
+.......+.|.|.+...
T Consensus 89 ~~~~~~~~l~~eL~rl~~ 106 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSS 106 (134)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 433333445566655543
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=30.28 E-value=4.8e+02 Score=27.00 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHhhHHHHHhhc-cCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHH-HHHhcc---CCCHHHHHHHHHHHHHHH
Q 000143 1693 YFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPA-ILDGLA---DENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1693 ~l~~llp~Ll~~l~-~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~-Ll~~L~---d~~~~VR~~a~~al~~lv 1765 (2058)
.-.+.+..|...++ +.++.+.-.++.++..+....|..|...+ ..++.. +.+.+. ++...||+.++..+....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34566677777887 47899999999999999999999886533 235554 455553 345688888888777766
Q ss_pred HHhc
Q 000143 1766 EHYA 1769 (2058)
Q Consensus 1766 ~~~~ 1769 (2058)
..|.
T Consensus 130 ~~f~ 133 (157)
T 1elk_A 130 DAFR 133 (157)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 6654
No 153
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=30.19 E-value=15 Score=30.32 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=12.5
Q ss_pred chhhhhHhhhcChHHHHH
Q 000143 252 VLPASIKMLKRNPEIILE 269 (2058)
Q Consensus 252 ilP~leKalLRsPE~~l~ 269 (2058)
||-.=.-+||||||++=.
T Consensus 20 VLNqKk~SLLRsPEVI~F 37 (62)
T 2kw3_C 20 VLNQKRLSLLRSPEVVQF 37 (62)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHH
Confidence 444445689999999643
No 154
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=28.71 E-value=8.9e+02 Score=29.66 Aligned_cols=125 Identities=12% Similarity=0.199 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHH
Q 000143 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~A 1985 (2058)
..|+..++.+ .......++..|.+.---.++..-.....-+.+++..+++..+......+...+..+++.++-.|-+.|
T Consensus 268 ~ycv~qf~eK-Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErA 346 (449)
T 2npp_B 268 AYCVVQFLEK-DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERA 346 (449)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHhc-CcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444444443 222223334444443322333222233335677888888887777778888888889999999999988
Q ss_pred HHHHHHH--HHHhChhhHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHhhc
Q 000143 1986 GLAFSTL--FKSAGMQAIDEIVPTLLHALED-------DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1986 a~a~~~l--~~~~g~~~~~~ilp~Ll~~L~~-------~~~~~~al~aL~~i~~~~ 2032 (2058)
..-+..= .... ..+...++|.++..|.. +..+..+..+++.++..+
T Consensus 347 L~~w~N~~i~~li-~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 347 LYYWNNEYIMSLI-SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HGGGGCHHHHHHH-HTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHCCHHHHHHH-HhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 7655321 1111 23455788888887742 345778888888777655
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.50 E-value=2.2e+02 Score=31.58 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=47.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~l~-D~~~~VR~aA~~al~~l~~~l 1451 (2058)
+.+..|...+.+. ++++.-.|+..++.+.+.+|..|...+. ..+..+...++ ..++.|++.+.+.+......+
T Consensus 45 ~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 45 YAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 6677788888765 8999999999999999999975544331 22222222221 245677777776666665444
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.84 E-value=3e+02 Score=30.45 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLA-DENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
-.+.+..|...+.+.++.+...++.++..+.++.|..|...+ ..++..|.+.+. ..++.|++.++..+......|..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 356677788888889999999999999999999998775432 223333333332 35678999888888877766654
No 157
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=25.36 E-value=8.8e+02 Score=28.45 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-hH---HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh---
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS--- 1494 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-~v---~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~--- 1494 (2058)
+..++....+.+......+..|+..+|....+- ++ ..++..+...+.+.+-.+-+.|+.+|-.++...+....
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 455666667778889999999999998775542 33 45666677777777777888899999988877643211
Q ss_pred hhhh--------hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhcC
Q 000143 1495 QCLP--------KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1495 ~~L~--------~Iip~L~~~L~---D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
.... ..++.++..|+ ..+..++..|..-+..+.....
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1111 11334555665 4567777766666655554443
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.99 E-value=5.2e+02 Score=26.30 Aligned_cols=74 Identities=8% Similarity=0.057 Sum_probs=53.7
Q ss_pred hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1920 ~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
....++..+.+.+....++.|..+.+-+..|+.+.+......|...+.+.+.......|+.+|......++...
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 34566666666666667889999999999999998875444444666666666666668888887777666654
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.28 E-value=5.2e+02 Score=28.33 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=53.3
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcC
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
+..+..+.+.|.+.+..+...|+.+|..+...++..+...+ ...+..+.+++. ..++.||..+...+...+..++
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 44555566778888999999999999999999887554322 124444444443 4578999999888888877654
No 160
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.06 E-value=4.5e+02 Score=26.15 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=51.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHH
Q 000143 1892 SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2058)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~ 1971 (2058)
..|..+...++..+..|+.. ....+.++..+.+.+....++.|....+-+.+++..+.......|.+.+-+.+.
T Consensus 15 ~~L~~s~~sI~~~s~w~l~h------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~ 88 (132)
T 4flb_A 15 QSVTNTMESIQGLSSWCIEN------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLP 88 (132)
T ss_dssp HHCCSSHHHHHHHHHHHHHT------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHH
T ss_pred HHCcccHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 34555444444444444432 223455666666666666788899999999999987754322233333333333
Q ss_pred HHhcC-CCHHHHHHHHHHHHHH
Q 000143 1972 TALCD-SILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1972 ~~L~D-~d~~VR~~Aa~a~~~l 1992 (2058)
.++.. .+++.|+.....++..
T Consensus 89 ~~~~~~~~~~~~~kl~~ll~iW 110 (132)
T 4flb_A 89 EAAALVKDPSVSKSVERIFKIW 110 (132)
T ss_dssp HHHHTTCSTTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh
Confidence 33221 2345565555544443
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.33 E-value=4.8e+02 Score=28.59 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLA-DENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
-.+.+..|...+.+.++.+...++.++..+....|..|...+ ..++..+...+. ..+..||+.++..+......|..
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 345666677788889999999999999999999998775432 224444444333 35678998888877776666643
Done!