Query 000144
Match_columns 2057
No_of_seqs 346 out of 614
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 7.5E-26 2.6E-30 212.5 5.1 72 114-185 3-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 6E-25 2.1E-29 209.3 5.9 73 113-185 6-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 8.3E-10 2.8E-14 107.9 5.9 82 869-954 13-97 (100)
4 2doa_A RNA polymerase II elong 98.8 2E-09 6.9E-14 106.1 5.5 82 869-954 12-96 (104)
5 2ct0_A Non-SMC element 1 homol 87.3 0.092 3.1E-06 49.6 -0.6 37 1430-1486 33-69 (74)
6 2kiz_A E3 ubiquitin-protein li 82.5 0.6 2.1E-05 42.8 2.6 38 1426-1485 30-67 (69)
7 1v87_A Deltex protein 2; ring- 81.4 0.34 1.2E-05 49.2 0.4 38 1428-1482 58-95 (114)
8 1bby_A RAP30; average structur 81.0 0.33 1.1E-05 45.0 0.2 32 898-930 35-66 (69)
9 2ecm_A Ring finger and CHY zin 79.3 0.48 1.7E-05 41.3 0.7 19 1427-1445 23-41 (55)
10 2xeu_A Ring finger protein 4; 78.6 0.46 1.6E-05 42.6 0.3 19 1427-1445 24-42 (64)
11 2ct2_A Tripartite motif protei 78.3 0.64 2.2E-05 44.6 1.2 32 1428-1478 34-65 (88)
12 2ea6_A Ring finger protein 4; 77.5 0.7 2.4E-05 42.1 1.2 19 1427-1445 36-54 (69)
13 3ng2_A RNF4, snurf, ring finge 77.3 0.73 2.5E-05 42.3 1.3 18 1428-1445 32-49 (71)
14 2ecv_A Tripartite motif-contai 76.4 0.85 2.9E-05 43.2 1.5 37 1428-1480 34-70 (85)
15 1x4j_A Ring finger protein 38; 75.4 0.43 1.5E-05 44.6 -0.8 18 1428-1445 41-58 (75)
16 1chc_A Equine herpes virus-1 r 75.3 0.99 3.4E-05 41.2 1.6 38 1427-1486 20-57 (68)
17 2ep4_A Ring finger protein 24; 74.3 1.2 4.1E-05 41.3 1.9 18 1428-1445 33-50 (74)
18 2ysl_A Tripartite motif-contai 73.0 0.8 2.7E-05 42.3 0.3 32 1428-1478 35-66 (73)
19 1g25_A CDK-activating kinase a 73.0 1.3 4.5E-05 40.0 1.8 18 1428-1445 23-40 (65)
20 1iym_A EL5; ring-H2 finger, ub 72.4 0.64 2.2E-05 40.5 -0.5 17 1428-1444 24-40 (55)
21 2ecw_A Tripartite motif-contai 72.1 1.1 3.9E-05 42.4 1.2 35 1428-1478 34-68 (85)
22 2ecy_A TNF receptor-associated 70.6 1.4 4.7E-05 40.1 1.3 18 1428-1445 30-47 (66)
23 2csy_A Zinc finger protein 183 70.5 1.7 6E-05 41.1 2.1 31 1428-1480 30-60 (81)
24 2yur_A Retinoblastoma-binding 68.7 1.7 5.7E-05 40.6 1.5 30 1428-1477 31-60 (74)
25 2l0b_A E3 ubiquitin-protein li 68.2 1.6 5.5E-05 42.5 1.3 17 1428-1444 58-74 (91)
26 2ect_A Ring finger protein 126 67.1 0.48 1.6E-05 44.6 -2.6 17 1428-1444 33-49 (78)
27 1fre_A Nuclear factor XNF7; zi 66.1 2.7 9.1E-05 34.8 2.0 36 116-157 4-39 (42)
28 2ecl_A Ring-box protein 2; RNF 65.5 1.8 6.1E-05 41.3 1.0 17 1428-1444 45-61 (81)
29 1e4u_A Transcriptional repress 65.3 1.4 4.6E-05 42.0 0.1 30 1430-1480 32-61 (78)
30 2djb_A Polycomb group ring fin 63.4 2.8 9.7E-05 38.7 1.9 18 1428-1445 31-48 (72)
31 2fc7_A ZZZ3 protein; structure 62.9 6 0.0002 38.1 4.1 44 117-161 26-74 (82)
32 2did_A Tripartite motif protei 62.8 4.6 0.00016 35.2 3.1 41 115-161 8-48 (53)
33 3fl2_A E3 ubiquitin-protein li 62.6 2.6 8.7E-05 43.4 1.6 30 1428-1478 67-96 (124)
34 3dpl_R Ring-box protein 1; ubi 62.5 2 6.8E-05 43.4 0.7 21 1425-1445 67-87 (106)
35 3ztg_A E3 ubiquitin-protein li 61.8 3.6 0.00012 39.8 2.4 31 1428-1478 29-59 (92)
36 3lrq_A E3 ubiquitin-protein li 61.5 2.1 7.3E-05 42.4 0.7 29 1429-1478 39-67 (100)
37 2dip_A Zinc finger SWIM domain 57.7 3.1 0.0001 41.4 1.1 42 117-162 36-77 (98)
38 1tot_A CREB-binding protein; z 57.2 3.3 0.00011 36.4 1.1 37 117-160 11-47 (52)
39 2yvr_A Transcription intermedi 57.0 3.4 0.00012 35.5 1.2 40 114-159 5-44 (50)
40 3nw0_A Non-structural maintena 56.7 3.5 0.00012 47.6 1.5 36 1430-1485 198-233 (238)
41 2d8t_A Dactylidin, ring finger 55.8 1.4 4.7E-05 40.8 -1.7 17 1428-1444 30-46 (71)
42 2ckl_B Ubiquitin ligase protei 55.7 3.8 0.00013 44.3 1.6 18 1428-1445 70-87 (165)
43 1jm7_A BRCA1, breast cancer ty 55.3 3.6 0.00012 41.2 1.2 31 1428-1477 36-66 (112)
44 2csv_A Tripartite motif protei 54.9 5.2 0.00018 37.2 2.1 38 115-159 18-55 (72)
45 3j20_W 30S ribosomal protein S 54.9 2.4 8.3E-05 38.4 -0.1 37 1916-1958 4-46 (63)
46 2ecn_A Ring finger protein 141 54.3 1.3 4.5E-05 40.6 -2.0 18 1428-1445 29-46 (70)
47 2e5r_A Dystrobrevin alpha; ZZ 54.3 5.8 0.0002 36.2 2.3 41 117-161 16-61 (63)
48 2y43_A E3 ubiquitin-protein li 54.3 3.1 0.00011 40.9 0.5 18 1428-1445 38-55 (99)
49 2egp_A Tripartite motif-contai 54.2 0.91 3.1E-05 42.6 -3.3 37 1428-1479 27-63 (79)
50 2d8u_A Ubiquitin ligase TRIM63 53.8 4.1 0.00014 36.9 1.2 40 115-159 8-47 (64)
51 2yrg_A Tripartite motif-contai 52.9 7.8 0.00027 34.7 2.8 40 116-161 15-54 (59)
52 4ayc_A E3 ubiquitin-protein li 50.0 3.9 0.00013 43.0 0.4 17 1428-1444 68-84 (138)
53 4a0k_B E3 ubiquitin-protein li 49.5 3.5 0.00012 42.3 0.0 19 1428-1446 81-99 (117)
54 2ecj_A Tripartite motif-contai 48.8 2.5 8.5E-05 37.0 -1.1 18 1428-1445 30-47 (58)
55 1t1h_A Gspef-atpub14, armadill 48.5 4.4 0.00015 37.9 0.5 18 1428-1445 23-40 (78)
56 2dja_A Midline-2; tripartite m 47.9 4.6 0.00016 38.6 0.5 39 116-159 19-57 (84)
57 3l11_A E3 ubiquitin-protein li 47.7 2 6.8E-05 43.6 -2.2 32 1428-1480 30-61 (115)
58 1z6u_A NP95-like ring finger p 47.1 5.6 0.00019 42.5 1.1 30 1428-1478 93-122 (150)
59 4ap4_A E3 ubiquitin ligase RNF 46.8 6.8 0.00023 40.2 1.7 18 1428-1445 94-111 (133)
60 4ap4_A E3 ubiquitin ligase RNF 44.4 6.2 0.00021 40.4 0.9 18 1428-1445 29-46 (133)
61 2ckl_A Polycomb group ring fin 44.0 5.3 0.00018 40.0 0.3 30 1428-1479 31-60 (108)
62 3ddt_A E3 ubiquitin-protein li 43.9 6.2 0.00021 33.6 0.7 39 116-159 7-45 (48)
63 2ysj_A Tripartite motif-contai 43.7 7.3 0.00025 34.8 1.2 18 1428-1445 35-52 (63)
64 1qxf_A GR2, 30S ribosomal prot 40.8 6 0.00021 36.2 0.1 28 1931-1958 5-38 (66)
65 3u5c_b RP61, YS20, 40S ribosom 40.2 5.8 0.0002 37.8 -0.1 37 1916-1958 23-65 (82)
66 2egm_A Tripartite motif-contai 39.4 4.9 0.00017 35.8 -0.7 39 114-158 17-55 (57)
67 2d8s_A Cellular modulator of i 39.0 13 0.00043 35.5 2.1 29 1432-1480 41-69 (80)
68 3iz6_X 40S ribosomal protein S 37.0 6.9 0.00024 37.6 -0.1 38 1916-1959 25-68 (86)
69 2xzm_6 RPS27E; ribosome, trans 36.1 7.2 0.00025 37.1 -0.2 37 1916-1958 21-63 (81)
70 4b6d_A RAC GTPase-activating p 34.5 18 0.00062 32.7 2.2 21 116-136 23-43 (61)
71 3hct_A TNF receptor-associated 32.1 12 0.00041 38.1 0.7 18 1428-1445 33-50 (118)
72 4ic3_A E3 ubiquitin-protein li 31.8 9.9 0.00034 35.4 0.0 33 1428-1486 39-72 (74)
73 1wim_A KIAA0161 protein; ring 31.3 23 0.00079 34.3 2.6 38 1428-1479 23-62 (94)
74 3mjh_B Early endosome antigen 30.7 12 0.00041 30.0 0.3 8 1470-1477 6-13 (34)
75 1rmd_A RAG1; V(D)J recombinati 29.7 18 0.00063 36.4 1.6 19 1428-1446 38-56 (116)
76 1jm7_B BARD1, BRCA1-associated 27.0 7.5 0.00026 39.5 -1.9 27 1428-1478 38-64 (117)
77 1wiv_A UBP14, ubiquitin-specif 26.6 65 0.0022 30.2 4.6 45 2-46 16-69 (73)
78 2y1n_A E3 ubiquitin-protein li 26.3 27 0.00092 43.0 2.5 38 1428-1486 347-384 (389)
79 2ecg_A Baculoviral IAP repeat- 24.3 23 0.0008 32.9 1.1 33 1428-1486 40-73 (75)
80 2d8v_A Zinc finger FYVE domain 23.9 42 0.0014 30.7 2.6 35 123-160 14-52 (67)
81 3k1l_B Fancl; UBC, ring, RWD, 23.6 19 0.00066 43.3 0.5 39 1428-1477 331-369 (381)
82 2jun_A Midline-1; B-BOX, TRIM, 22.6 20 0.00067 35.3 0.3 38 116-158 60-97 (101)
83 3knv_A TNF receptor-associated 21.4 15 0.00052 38.7 -0.9 29 1428-1477 46-74 (141)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.91 E-value=7.5e-26 Score=212.46 Aligned_cols=72 Identities=42% Similarity=1.112 Sum_probs=66.9
Q ss_pred CCccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000144 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK 185 (2057)
Q Consensus 114 ~~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~ 185 (2057)
..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus 3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 4579999999999999999999999999999999999999999999885 78999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.90 E-value=6e-25 Score=209.28 Aligned_cols=73 Identities=32% Similarity=0.769 Sum_probs=68.9
Q ss_pred CCCccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEEec---CCccccCCCcccccccCCCCcCC
Q 000144 113 GQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT---GGGCCDCGDVTAWKREGFCSRHK 185 (2057)
Q Consensus 113 ~~~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~---~gG~CDCGd~~awk~~~fC~~H~ 185 (2057)
-..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus 6 h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 6 HTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred cCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 45689999999999999999999999999999999999999999999874 68999999999999999999884
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.3e-10 Score=107.94 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEEeccccccccccccccCchhH
Q 000144 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2057)
Q Consensus 869 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2057)
-+|..|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|+|+++.+++|+..|+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~----~~~y~Lk~~~~~eVq~dWp~Yte~er 88 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSK----DLSYTLKDYVFKELQRDWPGYSEIDR 88 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT----TTEEEECSTHHHHSCTTCTTCCTTHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc----CCeeehhHHHHHHhccCCCCCCHHHH
Confidence 399999999999999999999999887644 45799999999999874 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000144 946 QVAEERYLR 954 (2057)
Q Consensus 946 q~aeer~~r 954 (2057)
|..+.+..+
T Consensus 89 q~v~r~L~~ 97 (100)
T 2e5n_A 89 RSLESVLSR 97 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988665543
No 4
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.84 E-value=2e-09 Score=106.12 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEEeccccccccccccccCchhH
Q 000144 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2057)
Q Consensus 869 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2057)
-+|+.|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|.|+|+.+++|+..|+
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~----~~~y~Lk~~~y~eVq~dWp~Yte~er 87 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ 87 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----CCeeeehHHHHHHhcCCCCCCCHHHH
Confidence 399999999999999999999999887644 45799999999999864 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000144 946 QVAEERYLR 954 (2057)
Q Consensus 946 q~aeer~~r 954 (2057)
|..+.+..+
T Consensus 88 q~v~r~l~~ 96 (104)
T 2doa_A 88 QLLKRVLVR 96 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888665543
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.30 E-value=0.092 Score=49.64 Aligned_cols=37 Identities=30% Similarity=0.691 Sum_probs=26.5
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000144 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2057)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPil 1486 (2057)
.|||.+|..|..+|+++ + +.=.||+||+--..-+|=+
T Consensus 33 ~C~h~fH~~Ci~kWl~~---~-----------------~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQS---N-----------------AEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSCCEECHHHHHHHSTT---C-----------------SSCCCTTTCSCCCSCCCCC
T ss_pred CCCchhhHHHHHHHHHh---c-----------------CCCCCCCCcCcCCCCCCCC
Confidence 99999999999999842 1 0114999997655444444
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.51 E-value=0.6 Score=42.79 Aligned_cols=38 Identities=32% Similarity=0.751 Sum_probs=27.9
Q ss_pred ccccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecC
Q 000144 1426 IHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2057)
Q Consensus 1426 vh~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPi 1485 (2057)
+....|||..|..|+.+++.. + + .||+||.--+..+|.
T Consensus 30 ~~~~~C~H~fc~~Ci~~~~~~-------~----~-----------~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 30 VRRLPCMHLFHQVCVDQWLIT-------N----K-----------KCPICRVDIEAQLPS 67 (69)
T ss_dssp EEECTTSCEEEHHHHHHHHHH-------C----S-----------BCTTTCSBSCSCCCC
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------C----C-----------CCcCcCccccCcCCC
Confidence 335679999999999998753 0 0 299999876665553
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.38 E-value=0.34 Score=49.17 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=27.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccce
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSV 1482 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsv 1482 (2057)
+..|||..|..|+..++..-. ..+...||+||+.-...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----------------~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----------------KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----------------CSSCCBCTTTCCBSSSC
T ss_pred cCCCCCcccHHHHHHHHHccc-----------------CCCCCcCCCCCCccCCC
Confidence 678999999999999973210 02346799999865443
No 8
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=81.04 E-value=0.33 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHccccCCCCCCcceEEEecccc
Q 000144 898 KFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYW 930 (2057)
Q Consensus 898 ~~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~ 930 (2057)
.+.-+-+||++||+|.. +|...|+|+|||||-
T Consensus 35 P~~yLKeiL~~Ia~~~k-~g~~~~~weLKpEyr 66 (69)
T 1bby_A 35 PVVYLKEILKEIGVQNV-KGIHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHHHHHCCCBC-CTTCCCBBCCCCSSC
T ss_pred cHHHHHHHHHHHHHHHc-CCCCCCeeeCcHHHh
Confidence 34568999999999986 456789999999975
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.34 E-value=0.48 Score=41.26 Aligned_cols=19 Identities=32% Similarity=0.938 Sum_probs=16.3
Q ss_pred cccccChHhhHHHHHHHHH
Q 000144 1427 HLSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~ 1445 (2057)
.+..|||..|..|++++++
T Consensus 23 ~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 23 HVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp EECTTSCEEETTHHHHHHH
T ss_pred EecCCCCcccHHHHHHHHH
Confidence 3667999999999999865
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.63 E-value=0.46 Score=42.64 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccChHhhHHHHHHHHH
Q 000144 1427 HLSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~ 1445 (2057)
.+..|||..|.+|++++++
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp EEETTSCEEEHHHHHHHHH
T ss_pred EeCCCCCchhHHHHHHHHH
Confidence 3678999999999999975
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.30 E-value=0.64 Score=44.62 Aligned_cols=32 Identities=31% Similarity=0.864 Sum_probs=25.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||..|..|++++++.- .+...||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASS-------------------INGVRCPFCSKI 65 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHC-------------------SSCBCCTTTCCC
T ss_pred ECCCCChhhHHHHHHHHHcC-------------------CCCcCCCCCCCc
Confidence 55799999999999997531 135789999975
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.50 E-value=0.7 Score=42.07 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccChHhhHHHHHHHHH
Q 000144 1427 HLSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~ 1445 (2057)
.+..|||..|..|++++++
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp EECSSSCEEEHHHHHHHHH
T ss_pred EeCCCCChhcHHHHHHHHH
Confidence 3678999999999999975
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=77.33 E-value=0.73 Score=42.33 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|++++++
T Consensus 32 ~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLK 49 (71)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred eCCCCChHhHHHHHHHHH
Confidence 678999999999999974
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.43 E-value=0.85 Score=43.23 Aligned_cols=37 Identities=35% Similarity=0.618 Sum_probs=27.7
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsN 1480 (2057)
+..|||..|..|+.+|+..-... .+.+.||+||.--.
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~----------------~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSMLD----------------KGESSCPVCRISYQ 70 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHHT----------------TSCCCCTTTCCSSC
T ss_pred eCCCCCHHHHHHHHHHHHHhhcC----------------CCCCcCCCCCCccC
Confidence 44799999999999998763321 24678999997543
No 15
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.39 E-value=0.43 Score=44.63 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=15.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
...|||..|..|..++++
T Consensus 41 ~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp EETTTEEEETTHHHHHHH
T ss_pred EECCCCHhHHHHHHHHHH
Confidence 456999999999999863
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.29 E-value=0.99 Score=41.16 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=29.4
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000144 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2057)
Q Consensus 1427 h~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPil 1486 (2057)
.+..|||..|..|..++++. + ..||+||.--+.+++.+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ------------N----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH------------S----------CSTTTTCCCCCCEECCC
T ss_pred EecCCCCeeHHHHHHHHHhC------------c----------CcCcCCChhhHhhhhcc
Confidence 36679999999999998731 0 26999998877776665
No 17
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.32 E-value=1.2 Score=41.33 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+-.|||..|..|+.++++
T Consensus 33 ~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp EETTTEEEEHHHHHHHHH
T ss_pred EcCCCCEecHHHHHHHHH
Confidence 336999999999999873
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.05 E-value=0.8 Score=42.35 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.6
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||..|..|+.++++. ..+...||+||.-
T Consensus 35 ~~~CgH~fC~~Ci~~~~~~-------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 35 TIDCGHNFCLKCITQIGET-------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp ECTTCCEEEHHHHHHHCSS-------------------SCSCCCCSSSCCC
T ss_pred EcCCCChhhHHHHHHHHHc-------------------CCCCCCCCCCCCc
Confidence 4489999999999998650 0245689999974
No 19
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.00 E-value=1.3 Score=40.05 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.7
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|.++++.
T Consensus 23 ~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp ECTTCCCEEHHHHHHHHH
T ss_pred cCCCCCHhHHHHHHHHHH
Confidence 568999999999998864
No 20
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.36 E-value=0.64 Score=40.52 Aligned_cols=17 Identities=41% Similarity=1.099 Sum_probs=14.4
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
+..|||..|.+|.++++
T Consensus 24 ~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 24 LPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CSSSCCEECTTHHHHTT
T ss_pred CCCCCCcccHHHHHHHH
Confidence 33599999999998885
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.10 E-value=1.1 Score=42.35 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=26.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||..|..|+.+|+.... .+.+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~----------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNR----------------NTDGKGNCPVCRVP 68 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSB----------------CTTSCBCCTTTCCC
T ss_pred eCCCCCHHHHHHHHHHHHhcc----------------CCCCCCCCCCCCCc
Confidence 557999999999999975421 12356889999974
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.59 E-value=1.4 Score=40.09 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 30 QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCSSSCCCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999975
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.47 E-value=1.7 Score=41.09 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsN 1480 (2057)
+..|||..|..|+.++++. ...||+||.--+
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 30 VTKCRHYFCESCALEHFRA----------------------TPRCYICDQPTG 60 (81)
T ss_dssp ECTTSCEEEHHHHHHHHHH----------------------CSBCSSSCCBCC
T ss_pred EccCCCHhHHHHHHHHHHC----------------------CCcCCCcCcccc
Confidence 6689999999999999752 125999998765
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=68.66 E-value=1.7 Score=40.60 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=23.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKs 1477 (2057)
+..|||..|..|+++++... +.+.||+||.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~--------------------~~~~CP~Cr~ 60 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLES--------------------DEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHS--------------------SSSCCSSSCC
T ss_pred cCCCCCHHHHHHHHHHHHhc--------------------CCCcCCCCCC
Confidence 44599999999999997630 2357999999
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.23 E-value=1.6 Score=42.51 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=14.7
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
...|||..|..|...++
T Consensus 58 ~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 58 ELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EETTTEEEEHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHH
Confidence 44599999999999886
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.13 E-value=0.48 Score=44.61 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
+..|||..|..|..+++
T Consensus 33 ~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp ECTTSCEEETTTTHHHH
T ss_pred EeCCCCeecHHHHHHHH
Confidence 44699999999999986
No 27
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=66.05 E-value=2.7 Score=34.79 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=27.7
Q ss_pred ccccccccCCceeEEecccCCCCCccccccccCCCCCCCcee
Q 000144 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDY 157 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~ 157 (2057)
..|+.-- ....|-|.+|+. .+|..|+..+.|+||++
T Consensus 4 ~~C~~H~--e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~ 39 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDGT----LSCVICRDSLKHASHNF 39 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSSS----SSCCTTSSCSSCTTCCC
T ss_pred ccchhhC--CeeeEEeCCCCe----EEeccCCCCCCCCCCcE
Confidence 4676663 346667887764 79999999999999986
No 28
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.46 E-value=1.8 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.1
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
+..|||..|.+|.++++
T Consensus 45 ~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred eCCCCCccChHHHHHHH
Confidence 55799999999999986
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=65.34 E-value=1.4 Score=42.03 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=22.9
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000144 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2057)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsN 1480 (2057)
.|||..+..|+.++.+ .+.+.||+||.--.
T Consensus 32 ~CGH~fC~~Cl~~~~~---------------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT---------------------DENGLCPACRKPYP 61 (78)
T ss_dssp TTSCCCCHHHHHHHTT---------------------SSCSBCTTTCCBCS
T ss_pred CCCCCcCHHHHHHHHh---------------------cCCCCCCCCCCccC
Confidence 4999999999987631 13478999998543
No 30
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.43 E-value=2.8 Score=38.71 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|..++++
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp CSSSCCEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 468999999999999985
No 31
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=62.88 E-value=6 Score=38.07 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.1
Q ss_pred cccccccCCceeEEecccCCCCCccccccccCC----CCC-CCceeEEEe
Q 000144 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQN----GNH-KEHDYSIIY 161 (2057)
Q Consensus 117 ~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~----~~H-~~H~~~~~~ 161 (2057)
.|+..--.| +-|+|.+|.-+...-||..||.. ..| ..|.+..+.
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 365432223 67999999865667899999975 578 589998775
No 32
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=62.85 E-value=4.6 Score=35.15 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=32.5
Q ss_pred CccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEEe
Q 000144 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2057)
Q Consensus 115 ~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~ 161 (2057)
...|..-- ...-|-|.+|+. .+|..|+..+.|++|++.-..
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQE----AVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSCS----EECHHHHTSSTTTTSCEEECC
T ss_pred CCcChhhC--CeeeEEeCCCCe----EEeccccCCCCCCCCcEeeHH
Confidence 45787763 457788998875 799999999999999986543
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=62.58 E-value=2.6 Score=43.41 Aligned_cols=30 Identities=40% Similarity=0.812 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||..|..|+.+++. . +.+.||+||.-
T Consensus 67 ~~~CgH~fC~~Ci~~~~~----~-----------------~~~~CP~Cr~~ 96 (124)
T 3fl2_A 67 TTVCQHNVCKDCLDRSFR----A-----------------QVFSCPACRYD 96 (124)
T ss_dssp ECTTSCEEEHHHHHHHHH----T-----------------TCCBCTTTCCB
T ss_pred EeeCCCcccHHHHHHHHh----H-----------------CcCCCCCCCcc
Confidence 458999999999999876 0 23579999974
No 34
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=62.48 E-value=2 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=17.3
Q ss_pred CccccccChHhhHHHHHHHHH
Q 000144 1425 GIHLSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1425 gvh~SsCGH~MH~~C~~~Y~~ 1445 (2057)
.+....|||..|..|...++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT
T ss_pred eEeecccCcEECHHHHHHHHH
Confidence 345678999999999999854
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=61.79 E-value=3.6 Score=39.78 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=23.8
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||..+..|+..++.. .+.+.||+||.-
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQN 59 (92)
T ss_dssp CTTTCCEECHHHHHHHHHH--------------------CTTCCCTTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHh--------------------cCCCcCcCCCCc
Confidence 4449999999999998751 123689999963
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=61.51 E-value=2.1 Score=42.40 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=23.8
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
..|||.-|..|+.++++.- .+.||+||.-
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~---------------------~~~CP~Cr~~ 67 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQ---------------------RAQCPHCRAP 67 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHT---------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHHC---------------------cCCCCCCCCc
Confidence 7899999999999987531 1679999974
No 37
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=57.74 E-value=3.1 Score=41.42 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=31.8
Q ss_pred cccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEEec
Q 000144 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT 162 (2057)
Q Consensus 117 ~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~ 162 (2057)
.|+..--.| .-|+|..|. ..-+|..||..+.|.+|.|..+..
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 466532223 679999996 367999999999999999976544
No 38
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=57.20 E-value=3.3 Score=36.36 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=28.6
Q ss_pred cccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEE
Q 000144 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 160 (2057)
Q Consensus 117 ~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~ 160 (2057)
.|++.. | .-|+|..|. ..-+|..||..+.| +|....+
T Consensus 11 ~C~~~i--g-~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV--E-TRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE--S-SEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC--c-ceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 466653 3 679999996 46699999999999 7887654
No 39
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=57.02 E-value=3.4 Score=35.52 Aligned_cols=40 Identities=23% Similarity=0.596 Sum_probs=29.0
Q ss_pred CCccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEE
Q 000144 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2057)
Q Consensus 114 ~~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2057)
....|+.--. ....|-|.+|+. .+|..|.. +.|+||++.-
T Consensus 5 ~~~~C~~H~~-e~l~lfC~~~~~----~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 5 RTVYCNVHKH-EPLVLFCESCDT----LTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp CSCBCSSSTT-CBCCEEETTTTE----EECHHHHH-TTTTTCCEEE
T ss_pred CCCcCcCCCC-CCEEEEeCCCCE----EEecccCC-CcCCCCceec
Confidence 3455754422 346788999974 79999998 6999999754
No 40
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=56.73 E-value=3.5 Score=47.58 Aligned_cols=36 Identities=31% Similarity=0.733 Sum_probs=25.9
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecC
Q 000144 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2057)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPi 1485 (2057)
+|||.+|..|+.+|+++ +++-.||.|+....-=.|-
T Consensus 198 ~C~~~~H~~C~~~~~~~--------------------~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQS--------------------NAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp SSCCEECHHHHHHHTTT--------------------CSSCBCTTTCCBCCSCCCC
T ss_pred ccChHHHHHHHHHHHHh--------------------CCCCCCCCCCCCCCCCCCC
Confidence 49999999999999742 1345699998854443333
No 41
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.85 E-value=1.4 Score=40.76 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.3
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
+..|||..|..|+.+++
T Consensus 30 ~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp EETTTEEEEHHHHHHCT
T ss_pred EccCCCHHHHHHHHHHH
Confidence 44699999999998774
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=55.72 E-value=3.8 Score=44.28 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.8
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|+.+++.
T Consensus 70 ~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 70 TKECLHRFCADCIITALR 87 (165)
T ss_dssp ETTTCCEEEHHHHHHHHH
T ss_pred eCCCCChhHHHHHHHHHH
Confidence 458999999999999975
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.35 E-value=3.6 Score=41.24 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=24.3
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKs 1477 (2057)
+..|||..|..|..+++..- .+.+.||+||.
T Consensus 36 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 36 STKCDHIFCKFCMLKLLNQK-------------------KGPSQCPLCKN 66 (112)
T ss_dssp BCTTSCCCCSHHHHHHHHSS-------------------SSSCCCTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHhC-------------------CCCCCCcCCCC
Confidence 45799999999999987520 13478999997
No 44
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=54.94 E-value=5.2 Score=37.17 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=30.7
Q ss_pred CccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEE
Q 000144 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2057)
Q Consensus 115 ~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2057)
...|..- ....-|-|.+|+. .+|..|+. +.|++|++.-
T Consensus 18 ~~~C~~H--~e~l~lfC~~d~~----~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVH--GKTMELFCQTDQT----CICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTT--CCBCCEEESSSCC----EECHHHHH-TTTSSSCEEE
T ss_pred cCcCccc--CCceEEEeCCCCe----EEccccCC-CCCCCCCEec
Confidence 4678777 2567788999886 78999998 9999999864
No 45
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.93 E-value=2.4 Score=38.42 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=28.6
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeeccCccccC
Q 000144 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2057)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1958 (2057)
+||+-|+.| +.+.+||.|++. ...+..|..||+++|.
T Consensus 4 rLv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 4 PIIPMPRSR------FLRVKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp GGCCCCSCC------EEEEECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ccccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 466666554 466899999874 6789999999998775
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.32 E-value=1.3 Score=40.58 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|..+++.
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 29 ILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp EETTTEEECHHHHHHSSC
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 667999999999988653
No 47
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.27 E-value=5.8 Score=36.20 Aligned_cols=41 Identities=27% Similarity=0.671 Sum_probs=29.0
Q ss_pred cccccccCCceeEEecccCCCCCccccccccCCCC----CC-CceeEEEe
Q 000144 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN----HK-EHDYSIIY 161 (2057)
Q Consensus 117 ~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~----H~-~H~~~~~~ 161 (2057)
.|++.--.| .-|+|.+|. ..-+|..||..+. |+ .|.+..+.
T Consensus 16 ~C~~~pi~G-~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMMG-FRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSCS-CEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCcceec-ceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 466652223 789999995 3679999998775 74 78776654
No 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=54.26 E-value=3.1 Score=40.94 Aligned_cols=18 Identities=22% Similarity=0.744 Sum_probs=15.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|+.+++.
T Consensus 38 ~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 38 IPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp CTTTCCEEEHHHHHHHHT
T ss_pred ECCCCCHhhHHHHHHHHH
Confidence 347999999999999974
No 49
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=54.18 E-value=0.91 Score=42.61 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLs 1479 (2057)
+..|||..|..|+.+|++.-. ....+...||+||.--
T Consensus 27 ~l~CgH~fC~~Ci~~~~~~~~---------------~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 27 SLDCGHSLCRACITVSNKEAV---------------TSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCSSSCCCCHHHHSCCCCCCS---------------SSCCCCCCCSSSCCCC
T ss_pred ECCCCCHHHHHHHHHHHHhcc---------------cCCCCCCcCCCCCCcC
Confidence 347999999999998754210 0123578899999753
No 50
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=53.83 E-value=4.1 Score=36.86 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=29.3
Q ss_pred CccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEE
Q 000144 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2057)
Q Consensus 115 ~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2057)
...|..-=. ...-|-|.+|+. .+|..|...+.|++|++.-
T Consensus 8 ~~~C~~H~~-e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 8 HPMCKEHED-EKINIYCLTCEV----PTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCSSCTT-CCCCSEESSSCC----CCCSHHHHSSSTTSSCEEC
T ss_pred CCcCcCcCC-CccceEcCcCCc----eeCccccCCCcCCCCCeeC
Confidence 355755411 245677999885 6999999999999999853
No 51
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.89 E-value=7.8 Score=34.69 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=31.4
Q ss_pred ccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEEEe
Q 000144 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~ 161 (2057)
..|..-- ...-|-|.+|+. .+|..|+..+.|++|++.-..
T Consensus 15 ~~C~~H~--e~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTC--CBCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhC--ceeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence 5687664 356788998875 799999999999999986543
No 52
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.04 E-value=3.9 Score=42.98 Aligned_cols=17 Identities=18% Similarity=0.671 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYV 1444 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2057)
+..|||..|..|..+++
T Consensus 68 ~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 68 TLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred ECCCCCCccHHHHHHHH
Confidence 56799999999998875
No 53
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=49.47 E-value=3.5 Score=42.34 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=0.0
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVSS 1446 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2057)
...|||.-|..|...++..
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------
T ss_pred cCCcCceEcHHHHHHHHHc
Confidence 5689999999999998654
No 54
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.76 E-value=2.5 Score=37.02 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|..|++++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 30 IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCSSCCCCCHHHHHHHTT
T ss_pred eCCCCCccCHHHHHHHHH
Confidence 457999999999999864
No 55
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=48.48 E-value=4.4 Score=37.88 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||.-+..|..++++
T Consensus 23 ~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp EETTTEEEEHHHHHHHHT
T ss_pred EcCCCCeecHHHHHHHHH
Confidence 558999999999999974
No 56
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=47.95 E-value=4.6 Score=38.63 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=29.4
Q ss_pred ccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEE
Q 000144 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2057)
..|..-= ....-|-|.+|+. .+|..|+..+.|+||++.-
T Consensus 19 ~~C~~H~-~e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHE-NEKVNMYCVSDDQ----LICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCS-SSCCCEEETTTTE----EECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcC-CccccEEcCCCCc----eEcccCcCCCCCCCCCccC
Confidence 4575431 1247788999984 7999999999999999754
No 57
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=47.67 E-value=2 Score=43.59 Aligned_cols=32 Identities=25% Similarity=0.731 Sum_probs=23.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsN 1480 (2057)
+..|||..+..|+.++++ .+.+.||+||.--.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 30 TLPCNHTLCKPCFQSTVE---------------------KASLCCPFCRRRVS 61 (115)
T ss_dssp ECTTSCEECHHHHCCCCC---------------------TTTSBCTTTCCBCH
T ss_pred EcCCCCHHhHHHHHHHHh---------------------HCcCCCCCCCcccC
Confidence 447999999999976642 13478999998543
No 58
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.15 E-value=5.6 Score=42.53 Aligned_cols=30 Identities=37% Similarity=0.791 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||.-+..|..+++.. +.+.||+||.-
T Consensus 93 ~~~CgH~fC~~Ci~~~~~~---------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 93 TTECFHNVCKDCLQRSFKA---------------------QVFSCPACRHD 122 (150)
T ss_dssp ECTTSCEEEHHHHHHHHHT---------------------TCCBCTTTCCB
T ss_pred EcCCCCchhHHHHHHHHHh---------------------CCCcCCCCCcc
Confidence 4689999999999999752 23579999974
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.84 E-value=6.8 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
...|||..|..|.+++++
T Consensus 94 ~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLK 111 (133)
T ss_dssp EETTSBEEEHHHHHHHHH
T ss_pred eCCCCChhhHHHHHHHHH
Confidence 668999999999999874
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=44.38 E-value=6.2 Score=40.44 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..|.+|+.++++
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 29 STECGHVFCSQCLRDSLK 46 (133)
T ss_dssp EETTCCEEEHHHHHHHHT
T ss_pred ecCCCChhhHHHHHHHHH
Confidence 678999999999999974
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=44.00 E-value=5.3 Score=39.96 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLs 1479 (2057)
+..|||.-|..|+.++++. ...||+||.--
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 31 IIECLHSFCKTCIVRYLET----------------------SKYCPICDVQV 60 (108)
T ss_dssp ETTTCCEEEHHHHHHHHTS----------------------CSBCTTTCCBS
T ss_pred eCCCCChhhHHHHHHHHHh----------------------CCcCcCCCccc
Confidence 3489999999999988642 04699999843
No 62
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=43.93 E-value=6.2 Score=33.65 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=28.6
Q ss_pred ccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeEE
Q 000144 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2057)
..|..--+ ....+-|.+|.. .+|..|...+.|++|++.-
T Consensus 7 ~~C~~H~~-e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 7 PMCKEHED-EKINIYCLTCEV----PTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp CBCSSSTT-SBCCEEETTTTE----EECHHHHHHSTTTTSCEEE
T ss_pred CcCCCCCC-ccccEEcCCCCe----eEcccccCCCcCCCCcEEe
Confidence 45764321 236688999874 7999999888999999753
No 63
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=7.3 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||.-|..|++++++
T Consensus 35 ~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 35 TIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp ECTTSSEECHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHH
Confidence 448999999999999986
No 64
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=40.78 E-value=6 Score=36.18 Aligned_cols=28 Identities=29% Similarity=0.797 Sum_probs=23.1
Q ss_pred HhhcccCCCCCC------CCCceeeeccCccccC
Q 000144 1931 YIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2057)
Q Consensus 1931 ~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1958 (2057)
+.+.+||.|++. ...+..|..||+++|+
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 345789999874 6889999999998776
No 65
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=40.19 E-value=5.8 Score=37.77 Aligned_cols=37 Identities=19% Similarity=0.548 Sum_probs=29.7
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeeccCccccC
Q 000144 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2057)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1958 (2057)
+||+-|+.| +...+|+.|++. ...++.|..||+++|+
T Consensus 23 ~Lv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 23 TLVQGPRSY------FLDVKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp SSSCCCCCC------EEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred eeccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 577777665 467899999974 5789999999998776
No 66
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.35 E-value=4.9 Score=35.80 Aligned_cols=39 Identities=31% Similarity=0.641 Sum_probs=30.8
Q ss_pred CCccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeE
Q 000144 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2057)
Q Consensus 114 ~~~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~ 158 (2057)
....|..-- ....|-|.+|+. .+|..|+..+.|++|++.
T Consensus 17 ~~~~C~~H~--e~L~lfC~~d~~----~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKHQ--EALKLFCEVDEE----AICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTTC--CBCCEEETTTTE----EECHHHHHSHHHHSSCEE
T ss_pred ccCcChhhC--ceeeEEcCCCCc----EEecccCCCCCCCCCcEe
Confidence 345687773 457788998875 799999999999999874
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.03 E-value=13 Score=35.55 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.5
Q ss_pred ChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccccc
Q 000144 1432 GHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2057)
Q Consensus 1432 GH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsN 1480 (2057)
+|..|.+|.++.+..- +...||+||.--+
T Consensus 41 ~h~fH~~Cl~~Wl~~~--------------------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--------------------DTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHH--------------------CCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhC--------------------CCCCCCCCCCeee
Confidence 4999999999998641 1347999998643
No 68
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.00 E-value=6.9 Score=37.57 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=24.4
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeeccCccccCC
Q 000144 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2057)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1959 (2057)
+||+-|+.| +...+|+.|++. ....+.|..||+++|+-
T Consensus 25 ~Lv~~PnS~------Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 25 RLVQSPNSF------FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------C------EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred eeccCCCCc------EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 466666554 456899999874 67899999999988863
No 69
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=36.06 E-value=7.2 Score=37.10 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=29.3
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeeccCccccC
Q 000144 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2057)
Q Consensus 1916 ~Li~LP~~y~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1958 (2057)
+||+=|+.| +...+||.|++. ...++.|..||+++|+
T Consensus 21 ~Lv~~PnS~------Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 21 RLIQAPNSY------FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp SSSCCCSCC------EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeCCCCc------EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 567777654 366799999874 6789999999998776
No 70
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=34.50 E-value=18 Score=32.73 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.9
Q ss_pred ccccccccCCceeEEecccCC
Q 000144 116 GVCGAVWGNNDIAYRCRTCEH 136 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~ 136 (2057)
.+||+.|+-|-..|+|++|.+
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 578999988999999999996
No 71
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.15 E-value=12 Score=38.06 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVS 1445 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2057)
+..|||..+..|+..++.
T Consensus 33 ~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 33 QTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred ECCcCChhhHHHHHHHHh
Confidence 457999999999999875
No 72
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.83 E-value=9.9 Score=35.41 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=25.2
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000144 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2057)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPil 1486 (2057)
+-.|||. ....|..+. ..||+||.--..++.+.
T Consensus 39 ~~pCgH~~~C~~C~~~~--------------------------~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 39 FVPCGHLVTCKQCAEAV--------------------------DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp EETTCCBCCCHHHHTTC--------------------------SBCTTTCCBCSEEEECB
T ss_pred EcCCCChhHHHHhhhcC--------------------------ccCCCcCcCccCcEEEe
Confidence 4579999 999996532 67999998776666553
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.31 E-value=23 Score=34.35 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=27.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccc--ccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPV--CRQLA 1479 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPL--CKsLs 1479 (2057)
+..|||.--.+||..|+++.-.. +. ...+.||. |+..+
T Consensus 23 l~~CgH~FC~~Cl~~~~~~~i~~--------g~------~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 23 IAQCQCIFCTLCLKQYVELLIKE--------GL------ETAISCPDAACPKQG 62 (94)
T ss_dssp ETTTTEEEEHHHHHHHHHHHHHH--------CS------CCCEECSCTTCSSCC
T ss_pred cCCCCCcccHHHHHHHHHHHhhc--------CC------cccccCccccCCCCC
Confidence 34699999999999999874321 11 14578999 99764
No 74
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.71 E-value=12 Score=30.01 Aligned_cols=8 Identities=50% Similarity=1.609 Sum_probs=7.0
Q ss_pred cccccccc
Q 000144 1470 FLCPVCRQ 1477 (2057)
Q Consensus 1470 FLCPLCKs 1477 (2057)
|+||+|+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 99999963
No 75
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=29.74 E-value=18 Score=36.39 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.4
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000144 1428 LSSCGHAVHQGCLDRYVSS 1446 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2057)
+..|||.-|..|+.++++.
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHH
T ss_pred EcCCCCcccHHHHHHHHhH
Confidence 4589999999999999764
No 76
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.01 E-value=7.5 Score=39.49 Aligned_cols=27 Identities=30% Similarity=0.739 Sum_probs=21.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCccccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsL 1478 (2057)
+..|||.-+..|..+++. ..||+||.-
T Consensus 38 ~~~CgH~fC~~Ci~~~~~------------------------~~CP~Cr~~ 64 (117)
T 1jm7_B 38 LGGCEHIFCSNCVSDCIG------------------------TGCPVCYTP 64 (117)
T ss_dssp CCSSSCCBCTTTGGGGTT------------------------TBCSSSCCB
T ss_pred eCCCCCHHHHHHHHHHhc------------------------CCCcCCCCc
Confidence 338999999999987743 569999986
No 77
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.60 E-value=65 Score=30.17 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHhcCCchhhhchh---------hHHHHhhhCCC
Q 000144 2 EIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYS---------GIVNFAKNDKS 46 (2057)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 46 (2057)
|||.|..++...+-+..+++|+..|++++...+- .++.|+-+|++
T Consensus 16 d~d~pl~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 16 DIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCCSCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CccCCCCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4566654434446677889999999999886543 46777777664
No 78
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.27 E-value=27 Score=42.96 Aligned_cols=38 Identities=29% Similarity=0.670 Sum_probs=28.3
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPil 1486 (2057)
...|||..|..|...++.+ + .-.||+||+--....++.
T Consensus 347 ~lpCGH~FC~~Ci~~wl~~---~------------------~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTSWQES---E------------------GQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp EETTCCEECHHHHHHHHHH---T------------------CSBCTTTCCBCCEEEECS
T ss_pred EeCCCChhhHHHHHHHHhc---C------------------CCCCCCCCCccCCceeEe
Confidence 6789999999999888653 0 125999998766655443
No 79
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.31 E-value=23 Score=32.86 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=24.6
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccccccceecCC
Q 000144 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2057)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKsLsNsvLPil 1486 (2057)
+.-|||. ....|.++ -..||+||.--...+++.
T Consensus 40 ~~pCgH~~~C~~C~~~--------------------------~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 40 FVPCGHLVTCKQCAEA--------------------------VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp CSSSCCCCBCHHHHHH--------------------------CSBCTTTCCBCCCCCBCC
T ss_pred EecCCCHHHHHHHhhC--------------------------CCCCccCCceecCcEEEe
Confidence 4579999 99999831 046999998776666653
No 80
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.92 E-value=42 Score=30.74 Aligned_cols=35 Identities=40% Similarity=0.824 Sum_probs=25.3
Q ss_pred cCCceeEEecccCCCCCccccccccCCC----CCCCceeEEE
Q 000144 123 GNNDIAYRCRTCEHDPTCAICVPCFQNG----NHKEHDYSII 160 (2057)
Q Consensus 123 ~~~e~~y~C~~C~~d~t~~~C~~CF~~~----~H~~H~~~~~ 160 (2057)
-+.+.++||..|.-| ..|..||+.. +-++|+..-+
T Consensus 14 CneDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 14 CNEDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp TCSCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred eCCCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 345788999999876 8999999652 2356776544
No 81
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=23.57 E-value=19 Score=43.29 Aligned_cols=39 Identities=23% Similarity=0.660 Sum_probs=28.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKs 1477 (2057)
...|||.-|..|..+.+.+.... |. .++.-.| .||+||.
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~s---Rq------SFnvi~G--~CPyCr~ 369 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDG---KT------FLEVSFG--QCPFCKA 369 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSS---SC------TTTCCEE--ECTTTCC
T ss_pred CCccCCccchHHHHHHHHhCCCc---cc------cccccCC--CCCCCCC
Confidence 35899999999999999997632 22 2333333 5999998
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=22.63 E-value=20 Score=35.26 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=28.6
Q ss_pred ccccccccCCceeEEecccCCCCCccccccccCCCCCCCceeE
Q 000144 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2057)
Q Consensus 116 ~~C~~v~~~~e~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~ 158 (2057)
..|..--+ ....|-|.+|+. .+|..|...+.|+||++.
T Consensus 60 ~~C~~H~~-e~l~~fC~~~~~----~iC~~C~~~~~H~~H~~~ 97 (101)
T 2jun_A 60 LMCLEHED-EKVNMYCVTDDQ----LICALCKLVGRHRDHQVA 97 (101)
T ss_dssp CCCSSCSS-SCCCEEETTTTE----EECHHHHHHTTTSSSCBC
T ss_pred CcCcCcCC-CcceEECCCCCC----ccchhcCCCCCcCCCCee
Confidence 45754432 236778999864 799999998999999874
No 83
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=21.42 E-value=15 Score=38.70 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhcccccCCCcccCCCCcccccccccc
Q 000144 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2057)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCKs 1477 (2057)
...|||.-+..|+.++++ + +.+.||+||.
T Consensus 46 ~~~CgH~FC~~Ci~~~~~----~-----------------~~~~CP~Cr~ 74 (141)
T 3knv_A 46 QAQCGHRYCSFCLASILS----S-----------------GPQNCAACVH 74 (141)
T ss_dssp ECTTSCEEEHHHHHHHGG----G-----------------SCEECHHHHH
T ss_pred ECCCCCccCHHHHHHHHh----c-----------------CCCCCCCCCC
Confidence 568999999999999863 0 2257999997
Done!