Query 000145
Match_columns 2054
No_of_seqs 510 out of 3118
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 20:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 0E+00 0E+00 4198.1 177.3 2019 28-2050 2-2020(2102)
2 PLN03200 cellulose synthase-in 100.0 1E-166 3E-171 1681.2 114.6 1591 41-1758 60-1989(2102)
3 KOG0166 Karyopherin (importin) 100.0 1.9E-28 4.2E-33 301.5 33.8 414 434-892 68-488 (514)
4 KOG4224 Armadillo repeat prote 100.0 1.4E-27 3E-32 274.2 27.0 432 430-916 83-518 (550)
5 COG5064 SRP1 Karyopherin (impo 100.0 1.6E-27 3.5E-32 271.6 27.2 417 435-893 74-499 (526)
6 KOG4224 Armadillo repeat prote 99.9 2.6E-26 5.6E-31 263.8 27.1 390 395-796 90-495 (550)
7 KOG0166 Karyopherin (importin) 99.9 2.7E-25 5.9E-30 273.9 34.2 397 393-796 69-488 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 7.9E-23 1.7E-27 233.6 24.7 385 407-795 87-497 (526)
9 PF05804 KAP: Kinesin-associat 99.8 4.3E-17 9.3E-22 211.7 46.9 517 36-675 120-658 (708)
10 PF05804 KAP: Kinesin-associat 99.8 6E-17 1.3E-21 210.4 45.4 373 407-796 265-651 (708)
11 KOG1048 Neural adherens juncti 99.7 1.6E-16 3.4E-21 201.7 24.8 379 434-841 235-684 (717)
12 KOG1048 Neural adherens juncti 99.7 8.8E-16 1.9E-20 195.1 23.2 421 126-590 234-687 (717)
13 KOG4199 Uncharacterized conser 99.6 8.9E-13 1.9E-17 152.6 29.9 376 41-548 61-447 (461)
14 KOG2122 Beta-catenin-binding p 99.6 7.3E-14 1.6E-18 181.0 23.1 365 394-799 201-606 (2195)
15 KOG2122 Beta-catenin-binding p 99.5 4.8E-13 1E-17 173.6 26.0 360 192-668 212-603 (2195)
16 KOG4500 Rho/Rac GTPase guanine 99.5 7.7E-11 1.7E-15 140.2 36.1 492 41-587 5-519 (604)
17 PRK09687 putative lyase; Provi 99.5 9.5E-13 2.1E-17 157.5 20.0 251 475-791 24-279 (280)
18 PRK09687 putative lyase; Provi 99.5 3.4E-12 7.5E-17 152.7 21.7 253 516-837 23-278 (280)
19 PRK13800 putative oxidoreducta 99.4 1.9E-11 4E-16 167.7 29.4 276 432-791 621-896 (897)
20 KOG4199 Uncharacterized conser 99.4 4E-11 8.7E-16 139.2 26.5 324 169-588 102-445 (461)
21 KOG2171 Karyopherin (importin) 99.4 2E-07 4.3E-12 123.7 59.1 743 85-892 5-916 (1075)
22 KOG4500 Rho/Rac GTPase guanine 99.4 4.4E-10 9.5E-15 133.9 30.1 427 407-841 58-519 (604)
23 PRK13800 putative oxidoreducta 99.3 7.4E-11 1.6E-15 161.9 27.2 276 474-838 621-896 (897)
24 PF10508 Proteasom_PSMB: Prote 99.3 6.4E-09 1.4E-13 134.5 39.9 436 41-585 5-463 (503)
25 PF10508 Proteasom_PSMB: Prote 99.3 7.8E-09 1.7E-13 133.7 40.0 390 393-791 41-462 (503)
26 KOG2171 Karyopherin (importin) 99.2 9.4E-08 2E-12 126.6 45.9 504 217-840 5-548 (1075)
27 PF01602 Adaptin_N: Adaptin N 99.2 1.4E-07 3E-12 122.8 46.0 503 89-751 9-522 (526)
28 PF01602 Adaptin_N: Adaptin N 99.2 1.8E-08 4E-13 131.0 36.7 472 216-792 42-522 (526)
29 KOG1293 Proteins containing ar 99.2 2.4E-08 5.1E-13 125.5 33.4 497 93-675 18-542 (678)
30 KOG1222 Kinesin associated pro 99.1 1.1E-08 2.3E-13 123.0 27.0 404 38-512 259-672 (791)
31 KOG1824 TATA-binding protein-i 99.1 9.2E-06 2E-10 105.1 54.4 771 55-915 188-1050(1233)
32 KOG1293 Proteins containing ar 99.1 1.6E-07 3.6E-12 118.2 34.8 479 227-755 20-535 (678)
33 KOG2023 Nuclear transport rece 99.0 5.4E-07 1.2E-11 112.7 34.7 656 84-841 10-817 (885)
34 KOG1222 Kinesin associated pro 99.0 4.7E-07 1E-11 109.4 31.4 372 407-796 279-665 (791)
35 PF04826 Arm_2: Armadillo-like 98.9 4E-08 8.6E-13 116.1 19.0 193 635-841 10-205 (254)
36 KOG1824 TATA-binding protein-i 98.9 0.00034 7.4E-09 91.3 54.2 777 43-892 9-888 (1233)
37 PF04826 Arm_2: Armadillo-like 98.9 8.3E-08 1.8E-12 113.4 20.5 196 386-589 9-207 (254)
38 PTZ00429 beta-adaptin; Provisi 98.9 7.3E-05 1.6E-09 100.2 49.2 515 83-762 31-557 (746)
39 cd00020 ARM Armadillo/beta-cat 98.8 2.4E-08 5.1E-13 103.0 12.5 118 469-586 2-119 (120)
40 PTZ00429 beta-adaptin; Provisi 98.8 7.9E-06 1.7E-10 109.2 38.9 391 393-841 35-433 (746)
41 KOG2023 Nuclear transport rece 98.8 5.7E-06 1.2E-10 103.9 33.6 623 125-798 128-821 (885)
42 cd00020 ARM Armadillo/beta-cat 98.8 5.5E-08 1.2E-12 100.3 13.7 118 674-794 2-120 (120)
43 KOG1241 Karyopherin (importin) 98.7 0.0009 1.9E-08 86.4 49.8 761 52-928 12-848 (859)
44 KOG0213 Splicing factor 3b, su 98.7 0.00013 2.9E-09 92.5 41.5 608 83-792 506-1140(1172)
45 KOG0213 Splicing factor 3b, su 98.7 8.4E-05 1.8E-09 94.2 38.0 272 518-820 801-1084(1172)
46 KOG1241 Karyopherin (importin) 98.6 0.00043 9.3E-09 89.2 42.3 622 136-841 12-711 (859)
47 KOG0168 Putative ubiquitin fus 98.6 6.6E-06 1.4E-10 105.6 26.1 261 38-313 166-438 (1051)
48 KOG0168 Putative ubiquitin fus 98.6 1.4E-05 3.1E-10 102.7 28.9 379 436-820 171-653 (1051)
49 KOG1789 Endocytosis protein RM 98.6 0.00066 1.4E-08 88.4 42.9 615 172-821 1376-2141(2235)
50 COG5215 KAP95 Karyopherin (imp 98.6 0.0065 1.4E-07 76.3 48.4 638 53-840 17-710 (858)
51 TIGR02270 conserved hypothetic 98.5 5.9E-06 1.3E-10 104.0 21.2 243 474-795 54-297 (410)
52 cd00256 VATPase_H VATPase_H, r 98.5 9E-05 2E-09 93.3 30.1 351 84-504 53-426 (429)
53 KOG2160 Armadillo/beta-catenin 98.5 1.4E-05 3E-10 96.5 21.9 190 48-244 90-281 (342)
54 TIGR02270 conserved hypothetic 98.4 1.4E-05 2.9E-10 100.8 22.1 241 517-841 55-296 (410)
55 KOG0946 ER-Golgi vesicle-tethe 98.4 0.0033 7.1E-08 81.5 42.2 245 31-312 14-265 (970)
56 KOG1789 Endocytosis protein RM 98.4 0.016 3.5E-07 76.2 47.6 351 409-777 1743-2142(2235)
57 KOG1062 Vesicle coat complex A 98.4 0.00018 3.9E-09 93.1 30.9 434 399-885 116-576 (866)
58 cd00256 VATPase_H VATPase_H, r 98.4 9.7E-05 2.1E-09 93.0 27.3 317 390-708 53-425 (429)
59 KOG4151 Myosin assembly protei 98.3 5.1E-06 1.1E-10 107.6 15.3 358 542-947 376-741 (748)
60 COG5181 HSH155 U2 snRNP splice 98.3 0.00066 1.4E-08 85.1 31.9 271 519-820 607-889 (975)
61 COG1413 FOG: HEAT repeat [Ener 98.2 0.00013 2.9E-09 90.0 24.3 250 474-795 43-305 (335)
62 COG1413 FOG: HEAT repeat [Ener 98.2 0.00026 5.6E-09 87.5 25.4 275 432-789 43-330 (335)
63 PF05536 Neurochondrin: Neuroc 98.1 0.0034 7.4E-08 82.5 33.5 238 38-288 4-261 (543)
64 KOG3678 SARM protein (with ste 98.0 0.00026 5.6E-09 86.0 19.8 275 468-796 174-454 (832)
65 KOG2160 Armadillo/beta-catenin 98.0 0.00019 4.2E-09 86.9 18.3 182 407-588 99-283 (342)
66 KOG0212 Uncharacterized conser 97.9 0.001 2.3E-08 83.3 22.6 350 513-890 81-444 (675)
67 KOG1062 Vesicle coat complex A 97.9 0.0085 1.8E-07 78.3 31.2 221 520-762 354-590 (866)
68 PF03224 V-ATPase_H_N: V-ATPas 97.9 0.00039 8.5E-09 85.4 18.9 191 638-836 106-308 (312)
69 PF03224 V-ATPase_H_N: V-ATPas 97.9 0.00088 1.9E-08 82.4 21.4 225 518-785 57-305 (312)
70 COG5181 HSH155 U2 snRNP splice 97.8 0.048 1E-06 69.2 34.6 330 433-795 605-947 (975)
71 PRK14707 hypothetical protein; 97.8 0.6 1.3E-05 67.0 68.7 983 54-1113 135-1225(2710)
72 PF05536 Neurochondrin: Neuroc 97.8 0.0046 9.9E-08 81.3 27.1 433 638-1086 6-515 (543)
73 KOG0211 Protein phosphatase 2A 97.7 0.026 5.6E-07 75.9 32.3 571 86-751 84-662 (759)
74 KOG1060 Vesicle coat complex A 97.7 0.036 7.9E-07 72.3 32.0 334 91-527 115-477 (968)
75 KOG0567 HEAT repeat-containing 97.7 0.0015 3.2E-08 76.1 18.1 257 477-793 6-279 (289)
76 KOG1242 Protein containing ada 97.7 0.0084 1.8E-07 77.1 26.2 409 475-931 97-518 (569)
77 KOG0212 Uncharacterized conser 97.7 0.0038 8.3E-08 78.5 22.4 347 430-795 82-445 (675)
78 KOG2759 Vacuolar H+-ATPase V1 97.6 0.028 6.1E-07 69.5 28.5 345 84-503 65-438 (442)
79 KOG2759 Vacuolar H+-ATPase V1 97.6 0.015 3.2E-07 71.8 25.4 314 392-708 67-438 (442)
80 KOG0946 ER-Golgi vesicle-tethe 97.6 0.017 3.7E-07 75.2 26.4 300 388-709 60-400 (970)
81 KOG3678 SARM protein (with ste 97.6 0.0032 6.9E-08 77.0 18.9 264 425-708 173-452 (832)
82 COG5215 KAP95 Karyopherin (imp 97.5 0.64 1.4E-05 59.3 53.8 582 90-794 100-711 (858)
83 KOG0211 Protein phosphatase 2A 97.5 0.05 1.1E-06 73.3 30.6 414 433-888 238-662 (759)
84 KOG1060 Vesicle coat complex A 97.5 0.13 2.8E-06 67.5 32.6 438 393-890 38-533 (968)
85 KOG4413 26S proteasome regulat 97.4 0.057 1.2E-06 64.4 26.3 404 61-586 63-483 (524)
86 KOG1242 Protein containing ada 97.4 0.015 3.2E-07 74.9 23.0 325 529-890 69-401 (569)
87 COG5240 SEC21 Vesicle coat com 97.3 0.87 1.9E-05 58.2 36.0 461 435-969 68-589 (898)
88 KOG4646 Uncharacterized conser 97.3 0.00093 2E-08 70.6 9.2 112 443-556 28-139 (173)
89 KOG1059 Vesicle coat complex A 97.3 0.12 2.6E-06 67.2 28.6 216 219-503 147-365 (877)
90 KOG4535 HEAT and armadillo rep 97.3 0.06 1.3E-06 66.9 24.8 309 407-753 271-603 (728)
91 COG5240 SEC21 Vesicle coat com 97.2 1.3 2.7E-05 56.8 37.1 287 435-752 267-554 (898)
92 KOG2259 Uncharacterized conser 97.2 0.0029 6.3E-08 80.6 12.7 295 476-797 200-514 (823)
93 KOG1061 Vesicle coat complex A 97.1 0.33 7.1E-06 64.3 31.0 426 55-588 63-490 (734)
94 KOG1059 Vesicle coat complex A 97.1 0.11 2.3E-06 67.7 26.0 211 393-621 147-365 (877)
95 KOG1078 Vesicle coat complex C 97.1 0.88 1.9E-05 60.4 34.3 281 476-795 247-533 (865)
96 KOG4646 Uncharacterized conser 97.1 0.003 6.4E-08 66.9 9.7 120 393-513 19-138 (173)
97 PRK14707 hypothetical protein; 97.0 4.5 9.8E-05 58.9 58.9 698 56-795 179-908 (2710)
98 KOG1061 Vesicle coat complex A 96.9 0.052 1.1E-06 71.5 21.4 435 435-926 52-519 (734)
99 PF14664 RICTOR_N: Rapamycin-i 96.9 0.13 2.8E-06 64.8 24.3 273 476-794 27-364 (371)
100 PF13646 HEAT_2: HEAT repeats; 96.9 0.0019 4.2E-08 63.6 6.6 86 639-749 1-88 (88)
101 PF13646 HEAT_2: HEAT repeats; 96.9 0.0019 4.1E-08 63.7 6.5 86 681-790 1-88 (88)
102 KOG4413 26S proteasome regulat 96.9 0.28 6.1E-06 58.8 24.5 357 406-791 97-481 (524)
103 KOG0567 HEAT repeat-containing 96.8 0.071 1.5E-06 62.7 19.3 203 635-890 65-280 (289)
104 KOG0915 Uncharacterized conser 96.8 0.3 6.5E-06 68.2 27.6 423 349-796 824-1308(1702)
105 KOG2259 Uncharacterized conser 96.7 0.028 6.1E-07 72.1 16.1 225 562-797 202-442 (823)
106 PF00514 Arm: Armadillo/beta-c 96.7 0.0035 7.5E-08 53.7 5.4 41 754-794 1-41 (41)
107 KOG2973 Uncharacterized conser 96.6 0.27 6E-06 59.0 22.1 198 86-298 5-213 (353)
108 KOG2973 Uncharacterized conser 96.6 0.15 3.2E-06 61.2 19.9 285 477-794 6-315 (353)
109 KOG2734 Uncharacterized conser 96.4 0.53 1.2E-05 58.8 23.5 250 58-316 101-377 (536)
110 PF12348 CLASP_N: CLASP N term 96.4 0.018 3.9E-07 67.3 11.0 185 49-246 15-207 (228)
111 PF00514 Arm: Armadillo/beta-c 96.3 0.0052 1.1E-07 52.6 4.6 41 668-708 1-41 (41)
112 KOG1517 Guanine nucleotide bin 96.3 0.095 2.1E-06 70.3 17.7 239 408-670 484-736 (1387)
113 KOG1077 Vesicle coat complex A 96.2 3.5 7.5E-05 54.3 30.1 228 48-289 155-399 (938)
114 KOG1077 Vesicle coat complex A 96.2 4.6 9.9E-05 53.3 31.0 99 597-708 334-433 (938)
115 KOG1078 Vesicle coat complex C 96.2 7.9 0.00017 51.9 34.3 455 409-934 38-531 (865)
116 PF14664 RICTOR_N: Rapamycin-i 96.1 0.55 1.2E-05 59.4 22.4 236 639-893 27-272 (371)
117 KOG1058 Vesicle coat complex C 95.8 0.7 1.5E-05 60.8 21.5 309 434-796 136-465 (948)
118 PF12348 CLASP_N: CLASP N term 95.8 0.08 1.7E-06 61.9 12.5 184 485-670 18-210 (228)
119 PF10165 Ric8: Guanine nucleot 95.7 1.3 2.9E-05 57.5 24.3 235 51-289 42-338 (446)
120 KOG4535 HEAT and armadillo rep 95.7 1.8 3.9E-05 54.6 23.3 446 473-934 45-602 (728)
121 KOG0915 Uncharacterized conser 95.6 6.8 0.00015 55.8 30.3 200 527-753 1142-1344(1702)
122 KOG2734 Uncharacterized conser 95.4 0.61 1.3E-05 58.3 18.3 208 104-312 104-329 (536)
123 PF13513 HEAT_EZ: HEAT-like re 95.4 0.027 5.9E-07 51.1 5.3 55 738-792 1-55 (55)
124 PF05004 IFRD: Interferon-rela 95.4 1.5 3.2E-05 54.4 21.9 200 38-244 42-256 (309)
125 COG5369 Uncharacterized conser 95.3 0.05 1.1E-06 68.5 8.7 292 493-792 408-739 (743)
126 KOG1517 Guanine nucleotide bin 95.2 0.98 2.1E-05 61.3 20.0 182 58-246 487-672 (1387)
127 PF10165 Ric8: Guanine nucleot 95.2 0.77 1.7E-05 59.6 19.3 252 414-666 4-337 (446)
128 KOG1943 Beta-tubulin folding c 95.0 24 0.00052 49.3 45.3 365 394-794 345-747 (1133)
129 KOG2062 26S proteasome regulat 94.9 0.62 1.3E-05 61.2 16.9 260 475-781 414-681 (929)
130 KOG1943 Beta-tubulin folding c 94.8 27 0.00058 48.8 47.7 730 41-891 74-882 (1133)
131 PF12460 MMS19_C: RNAPII trans 94.7 8.7 0.00019 49.6 27.0 111 435-547 274-396 (415)
132 COG5096 Vesicle coat complex, 94.5 0.45 9.9E-06 64.0 15.0 165 567-752 28-194 (757)
133 KOG1240 Protein kinase contain 94.5 1.2 2.7E-05 61.3 18.7 254 529-795 436-726 (1431)
134 PF13513 HEAT_EZ: HEAT-like re 94.4 0.046 1E-06 49.6 4.1 55 651-706 1-55 (55)
135 COG5096 Vesicle coat complex, 94.4 14 0.00031 50.4 28.2 137 437-588 60-196 (757)
136 smart00185 ARM Armadillo/beta- 94.4 0.083 1.8E-06 44.4 5.3 39 755-793 2-40 (41)
137 COG5369 Uncharacterized conser 94.3 0.22 4.7E-06 63.1 10.6 170 625-796 419-596 (743)
138 PF09759 Atx10homo_assoc: Spin 94.0 0.15 3.2E-06 52.7 7.2 68 490-557 2-71 (102)
139 KOG2062 26S proteasome regulat 93.9 2.6 5.7E-05 55.7 19.2 258 558-876 413-680 (929)
140 PF12460 MMS19_C: RNAPII trans 93.9 27 0.00059 45.1 29.1 194 593-796 190-396 (415)
141 PF09759 Atx10homo_assoc: Spin 93.8 0.093 2E-06 54.2 5.3 67 449-515 3-71 (102)
142 smart00185 ARM Armadillo/beta- 93.6 0.13 2.9E-06 43.2 5.1 39 115-153 2-40 (41)
143 KOG4151 Myosin assembly protei 93.3 1.5 3.3E-05 58.6 16.1 235 464-706 494-739 (748)
144 PF08569 Mo25: Mo25-like; Int 93.2 13 0.00029 46.6 23.5 195 471-666 73-283 (335)
145 COG5231 VMA13 Vacuolar H+-ATPa 92.8 1.9 4.1E-05 52.1 14.4 220 526-752 159-427 (432)
146 KOG1020 Sister chromatid cohes 92.5 74 0.0016 46.2 39.1 108 217-342 817-924 (1692)
147 KOG1240 Protein kinase contain 92.5 2.2 4.7E-05 59.1 16.0 282 444-753 435-725 (1431)
148 PF11841 DUF3361: Domain of un 92.3 1.3 2.8E-05 49.5 11.6 118 469-587 6-131 (160)
149 KOG3036 Protein involved in ce 92.1 18 0.0004 42.9 20.7 141 98-244 93-246 (293)
150 PF12755 Vac14_Fab1_bd: Vacuol 91.8 0.61 1.3E-05 48.0 8.0 92 696-794 3-96 (97)
151 KOG1058 Vesicle coat complex C 91.7 31 0.00067 46.5 24.3 346 481-892 106-465 (948)
152 PF05004 IFRD: Interferon-rela 91.4 6.5 0.00014 48.8 17.7 153 638-794 87-257 (309)
153 KOG2956 CLIP-associating prote 90.6 10 0.00022 48.5 18.0 192 35-244 282-476 (516)
154 KOG1020 Sister chromatid cohes 90.5 1.2E+02 0.0025 44.5 36.8 142 83-245 815-960 (1692)
155 cd04050 C2B_Synaptotagmin-like 89.2 0.26 5.5E-06 50.9 2.6 38 2012-2050 2-41 (105)
156 KOG2611 Neurochondrin/leucine- 89.2 13 0.00028 47.4 17.2 123 55-183 25-164 (698)
157 PF12717 Cnd1: non-SMC mitotic 89.0 8 0.00017 44.0 14.6 93 650-754 1-93 (178)
158 cd04044 C2A_Tricalbin-like C2 88.6 0.38 8.3E-06 50.6 3.5 41 2010-2050 2-46 (124)
159 cd08383 C2A_RasGAP C2 domain ( 88.6 0.35 7.6E-06 50.4 3.1 39 2011-2050 1-39 (117)
160 PF11701 UNC45-central: Myosin 88.4 1.9 4.1E-05 48.2 8.9 109 390-501 43-157 (157)
161 PF12717 Cnd1: non-SMC mitotic 88.1 23 0.00049 40.4 17.5 89 529-622 1-93 (178)
162 COG5231 VMA13 Vacuolar H+-ATPa 88.1 11 0.00024 46.0 15.1 260 435-708 152-428 (432)
163 PF12719 Cnd3: Nuclear condens 87.7 12 0.00025 46.2 16.0 169 475-649 27-209 (298)
164 PF08045 CDC14: Cell division 87.6 3.9 8.5E-05 49.1 11.3 98 56-154 106-207 (257)
165 KOG1788 Uncharacterized conser 87.3 1.5E+02 0.0032 41.5 27.6 405 56-501 482-980 (2799)
166 KOG0414 Chromosome condensatio 87.2 1.6E+02 0.0035 42.1 43.6 141 638-795 920-1065(1251)
167 PF01347 Vitellogenin_N: Lipop 87.0 11 0.00023 51.2 16.5 173 636-836 394-584 (618)
168 PF08569 Mo25: Mo25-like; Int 86.9 30 0.00065 43.6 18.8 202 426-630 70-292 (335)
169 KOG2274 Predicted importin 9 [ 86.8 1.5E+02 0.0033 41.2 26.7 238 51-304 460-705 (1005)
170 COG5116 RPN2 26S proteasome re 86.7 10 0.00023 48.9 14.5 158 593-781 517-678 (926)
171 PF11841 DUF3361: Domain of un 86.5 6.7 0.00015 44.0 11.5 121 426-547 5-133 (160)
172 PF13764 E3_UbLigase_R4: E3 ub 86.5 19 0.0004 50.0 18.0 184 83-268 116-329 (802)
173 PF12755 Vac14_Fab1_bd: Vacuol 85.5 4.2 9.1E-05 42.0 8.8 92 58-152 3-94 (97)
174 PF11701 UNC45-central: Myosin 85.4 2 4.3E-05 48.0 6.9 147 639-792 5-157 (157)
175 cd04031 C2A_RIM1alpha C2 domai 85.0 0.73 1.6E-05 48.7 3.2 45 2005-2049 9-61 (125)
176 PF06025 DUF913: Domain of Unk 84.9 45 0.00097 42.8 19.4 98 125-227 106-207 (379)
177 smart00638 LPD_N Lipoprotein N 84.8 17 0.00038 48.8 16.8 174 635-836 355-540 (574)
178 cd04030 C2C_KIAA1228 C2 domain 84.8 0.63 1.4E-05 49.4 2.6 47 2004-2050 8-62 (127)
179 cd04036 C2_cPLA2 C2 domain pre 84.1 0.92 2E-05 47.8 3.5 39 2012-2050 2-44 (119)
180 PF07814 WAPL: Wings apart-lik 84.0 17 0.00038 46.1 15.3 218 38-258 20-312 (361)
181 PF04078 Rcd1: Cell differenti 83.9 5.9 0.00013 47.5 10.2 146 54-205 8-170 (262)
182 cd04041 C2A_fungal C2 domain f 83.7 0.96 2.1E-05 47.2 3.3 41 2010-2050 1-46 (111)
183 PF05918 API5: Apoptosis inhib 83.3 14 0.00031 48.9 14.3 173 563-753 28-207 (556)
184 PF13764 E3_UbLigase_R4: E3 ub 83.1 1E+02 0.0022 43.2 22.5 238 38-288 119-406 (802)
185 cd08391 C2A_C2C_Synaptotagmin_ 82.9 0.9 1.9E-05 47.6 2.8 40 2010-2050 1-48 (121)
186 cd08678 C2_C21orf25-like C2 do 82.7 0.98 2.1E-05 48.2 3.0 39 2012-2050 1-40 (126)
187 PF05918 API5: Apoptosis inhib 82.7 8.6 0.00019 50.9 12.0 119 528-662 34-158 (556)
188 PF08045 CDC14: Cell division 82.2 6 0.00013 47.6 9.5 84 232-315 107-190 (257)
189 KOG1967 DNA repair/transcripti 81.9 9.2 0.0002 52.2 11.8 154 592-752 867-1023(1030)
190 COG5116 RPN2 26S proteasome re 81.8 47 0.001 43.4 17.1 154 520-695 520-678 (926)
191 PF11698 V-ATPase_H_C: V-ATPas 81.6 2.6 5.7E-05 44.9 5.6 72 724-795 43-116 (119)
192 smart00638 LPD_N Lipoprotein N 81.5 22 0.00048 47.8 15.7 162 85-279 394-569 (574)
193 cd08681 C2_fungal_Inn1p-like C 81.3 1.5 3.2E-05 46.0 3.6 39 2010-2049 1-41 (118)
194 cd08381 C2B_PI3K_class_II C2 d 80.5 1.4 3E-05 47.0 3.2 42 2009-2050 12-58 (122)
195 KOG2999 Regulator of Rac1, req 79.9 28 0.00061 45.3 14.4 167 85-257 84-255 (713)
196 KOG0414 Chromosome condensatio 79.8 9.8 0.00021 53.2 11.2 141 433-588 920-1065(1251)
197 PF12719 Cnd3: Nuclear condens 79.5 21 0.00045 44.1 13.4 172 638-821 27-208 (298)
198 PF02985 HEAT: HEAT repeat; I 79.2 2.8 6E-05 33.9 3.8 28 127-154 2-29 (31)
199 KOG2999 Regulator of Rac1, req 78.9 21 0.00045 46.5 12.8 153 434-588 85-243 (713)
200 cd00276 C2B_Synaptotagmin C2 d 78.3 1.7 3.8E-05 46.3 3.1 40 2010-2049 14-59 (134)
201 PF06371 Drf_GBD: Diaphanous G 77.7 18 0.0004 40.9 11.4 109 39-153 66-186 (187)
202 KOG2025 Chromosome condensatio 77.4 34 0.00073 45.9 14.4 109 84-206 85-193 (892)
203 PF02985 HEAT: HEAT repeat; I 77.4 3.9 8.4E-05 33.1 4.1 28 767-794 2-29 (31)
204 cd08384 C2B_Rabphilin_Doc2 C2 77.4 2.3 4.9E-05 45.7 3.7 43 2008-2050 11-59 (133)
205 PF07814 WAPL: Wings apart-lik 77.4 63 0.0014 41.1 17.0 270 476-753 23-355 (361)
206 PF06371 Drf_GBD: Diaphanous G 77.1 4.2 9.1E-05 46.1 6.0 82 163-244 99-186 (187)
207 KOG3036 Protein involved in ce 76.9 96 0.0021 37.2 16.5 152 492-675 97-255 (293)
208 cd04014 C2_PKC_epsilon C2 doma 76.7 1.7 3.7E-05 46.7 2.5 43 2008-2050 2-56 (132)
209 PF14225 MOR2-PAG1_C: Cell mor 76.5 1.9E+02 0.0042 35.3 20.1 179 516-707 60-253 (262)
210 cd04024 C2A_Synaptotagmin-like 76.3 2 4.3E-05 45.6 2.8 40 2010-2050 1-44 (128)
211 cd08392 C2A_SLP-3 C2 domain fi 76.2 2.1 4.6E-05 46.1 3.1 41 2010-2050 15-62 (128)
212 cd04032 C2_Perforin C2 domain 76.1 2.5 5.3E-05 45.7 3.5 40 2010-2050 28-68 (127)
213 cd08410 C2B_Synaptotagmin-17 C 76.0 2.2 4.9E-05 46.2 3.2 41 2010-2050 14-60 (135)
214 KOG1832 HIV-1 Vpr-binding prot 76.0 54 0.0012 44.8 15.6 137 407-556 625-783 (1516)
215 cd08685 C2_RGS-like C2 domain 75.8 2.1 4.6E-05 45.5 2.9 40 2010-2049 12-56 (119)
216 COG5098 Chromosome condensatio 75.6 27 0.00058 46.4 12.6 140 435-589 895-1039(1128)
217 PF01347 Vitellogenin_N: Lipop 74.7 37 0.00079 46.1 14.9 163 86-281 433-615 (618)
218 cd08521 C2A_SLP C2 domain firs 74.3 2.7 5.8E-05 44.3 3.2 42 2009-2050 13-61 (123)
219 cd08405 C2B_Synaptotagmin-7 C2 73.4 3.1 6.7E-05 44.9 3.5 42 2009-2050 14-61 (136)
220 cd08387 C2A_Synaptotagmin-8 C2 73.3 3.2 7E-05 43.9 3.5 42 2009-2050 15-60 (124)
221 cd08407 C2B_Synaptotagmin-13 C 73.3 3.3 7.2E-05 45.4 3.7 41 2009-2049 14-62 (138)
222 KOG2032 Uncharacterized conser 73.1 75 0.0016 41.4 15.5 155 635-794 252-415 (533)
223 KOG2274 Predicted importin 9 [ 72.4 4.2E+02 0.009 37.3 24.9 174 443-622 502-690 (1005)
224 KOG1832 HIV-1 Vpr-binding prot 72.2 1.8E+02 0.0038 40.3 18.8 63 736-798 674-777 (1516)
225 cd04029 C2A_SLP-4_5 C2 domain 72.1 3.5 7.6E-05 44.1 3.5 42 2009-2050 14-62 (125)
226 cd08386 C2A_Synaptotagmin-7 C2 72.1 3.5 7.7E-05 43.6 3.5 41 2010-2050 16-60 (125)
227 KOG4653 Uncharacterized conser 72.0 89 0.0019 43.1 16.4 182 524-711 735-921 (982)
228 cd08393 C2A_SLP-1_2 C2 domain 71.5 3.7 8E-05 43.9 3.5 42 2009-2050 14-62 (125)
229 cd08385 C2A_Synaptotagmin-1-5- 71.0 3.7 8E-05 43.4 3.3 42 2009-2050 15-60 (124)
230 cd08375 C2_Intersectin C2 doma 70.8 2.8 6E-05 45.7 2.4 39 2010-2049 15-55 (136)
231 cd08388 C2A_Synaptotagmin-4-11 70.8 4 8.6E-05 43.9 3.5 42 2009-2050 15-61 (128)
232 PF04078 Rcd1: Cell differenti 70.3 2.6E+02 0.0057 34.1 20.2 200 444-675 7-226 (262)
233 PF04063 DUF383: Domain of unk 70.1 32 0.0007 39.9 10.8 94 84-182 52-158 (192)
234 cd04022 C2A_MCTP_PRT_plant C2 70.1 3.3 7.2E-05 44.2 2.7 38 2012-2050 2-41 (127)
235 PF06025 DUF913: Domain of Unk 70.0 1.8E+02 0.0039 37.5 18.4 96 218-314 108-209 (379)
236 PF08167 RIX1: rRNA processing 69.0 20 0.00043 40.5 8.7 88 1853-1944 30-123 (165)
237 PF11707 Npa1: Ribosome 60S bi 69.0 3.1E+02 0.0068 34.5 21.5 159 639-798 58-241 (330)
238 KOG2032 Uncharacterized conser 69.0 2.3E+02 0.005 37.2 18.4 251 442-708 268-531 (533)
239 cd08378 C2B_MCTP_PRT_plant C2 68.9 4.2 9.1E-05 43.3 3.2 35 2012-2049 2-36 (121)
240 KOG1991 Nuclear transport rece 68.7 5.1E+02 0.011 36.9 34.4 159 143-312 390-558 (1010)
241 cd08677 C2A_Synaptotagmin-13 C 67.3 4.9 0.00011 43.0 3.2 40 2009-2049 13-55 (118)
242 KOG1788 Uncharacterized conser 66.8 5.5E+02 0.012 36.5 21.8 81 758-840 901-981 (2799)
243 cd04049 C2_putative_Elicitor-r 66.8 4.6 0.0001 42.8 3.0 39 2010-2049 1-41 (124)
244 cd04042 C2A_MCTP_PRT C2 domain 66.5 4.1 8.8E-05 43.1 2.5 38 2012-2049 2-41 (121)
245 KOG1949 Uncharacterized conser 65.5 43 0.00092 44.9 11.4 150 641-795 178-332 (1005)
246 KOG2137 Protein kinase [Signal 65.0 91 0.002 42.4 14.5 170 638-823 350-521 (700)
247 cd08688 C2_KIAA0528-like C2 do 65.0 4.5 9.8E-05 42.1 2.5 37 2012-2049 1-40 (110)
248 cd04035 C2A_Rabphilin_Doc2 C2 65.0 5.9 0.00013 41.9 3.4 41 2009-2049 14-60 (123)
249 cd04011 C2B_Ferlin C2 domain s 64.6 6.2 0.00013 41.0 3.4 36 2012-2050 6-41 (111)
250 PF04063 DUF383: Domain of unk 64.0 24 0.00052 41.0 8.3 124 140-268 10-157 (192)
251 KOG1967 DNA repair/transcripti 63.9 25 0.00054 48.3 9.2 160 75-242 860-1021(1030)
252 cd04009 C2B_Munc13-like C2 dom 63.6 6.2 0.00013 42.6 3.3 41 2010-2050 16-64 (133)
253 KOG4653 Uncharacterized conser 63.1 1.8E+02 0.0039 40.4 16.6 213 479-706 732-962 (982)
254 cd08390 C2A_Synaptotagmin-15-1 63.1 7 0.00015 41.2 3.5 41 2010-2050 14-59 (123)
255 PF11698 V-ATPase_H_C: V-ATPas 63.0 19 0.00041 38.6 6.6 76 1802-1877 40-115 (119)
256 cd08403 C2B_Synaptotagmin-3-5- 62.8 6.3 0.00014 42.5 3.1 41 2010-2050 14-60 (134)
257 cd08402 C2B_Synaptotagmin-1 C2 61.4 6.9 0.00015 42.2 3.2 41 2009-2049 14-60 (136)
258 cd04020 C2B_SLP_1-2-3-4 C2 dom 60.4 7.6 0.00017 43.6 3.4 42 2009-2050 26-73 (162)
259 COG5218 YCG1 Chromosome conden 60.1 5.3E+02 0.011 34.7 19.2 182 539-751 74-264 (885)
260 cd08408 C2B_Synaptotagmin-14_1 59.6 8.4 0.00018 42.1 3.4 41 2010-2050 15-62 (138)
261 cd04016 C2_Tollip C2 domain pr 59.5 6.9 0.00015 41.9 2.7 39 2010-2049 2-41 (121)
262 PF00168 C2: C2 domain; Inter 58.8 6.7 0.00015 37.6 2.3 39 2012-2050 1-43 (85)
263 cd04028 C2B_RIM1alpha C2 domai 57.4 9.4 0.0002 42.3 3.4 42 2009-2050 28-76 (146)
264 KOG1248 Uncharacterized conser 57.4 8.4E+02 0.018 35.5 52.0 219 567-797 663-901 (1176)
265 KOG2956 CLIP-associating prote 57.2 3.7E+02 0.008 35.3 17.1 172 490-666 303-477 (516)
266 cd04045 C2C_Tricalbin-like C2 56.4 8.2 0.00018 41.0 2.6 40 2010-2049 1-42 (120)
267 PF08324 PUL: PUL domain; Int 55.3 2.7E+02 0.0059 33.6 15.7 135 649-786 122-266 (268)
268 cd04054 C2A_Rasal1_RasA4 C2 do 55.0 9.6 0.00021 40.4 2.9 39 2011-2049 1-41 (121)
269 cd08382 C2_Smurf-like C2 domai 54.8 12 0.00026 39.9 3.5 38 2012-2049 2-41 (123)
270 cd08377 C2C_MCTP_PRT C2 domain 54.1 10 0.00022 39.6 2.9 40 2010-2050 1-42 (119)
271 cd08376 C2B_MCTP_PRT C2 domain 54.0 9.2 0.0002 39.9 2.5 37 2012-2049 2-40 (116)
272 cd08406 C2B_Synaptotagmin-12 C 53.9 11 0.00024 41.2 3.2 45 2005-2049 8-60 (136)
273 KOG1820 Microtubule-associated 52.8 2.8E+02 0.0061 39.1 16.6 195 34-245 247-443 (815)
274 cd04051 C2_SRC2_like C2 domain 52.6 13 0.00029 39.3 3.5 39 2011-2049 1-41 (125)
275 cd08404 C2B_Synaptotagmin-4 C2 51.9 12 0.00025 40.5 3.0 41 2009-2049 14-60 (136)
276 cd08682 C2_Rab11-FIP_classI C2 51.8 12 0.00025 40.0 2.9 38 2012-2050 1-40 (126)
277 cd04039 C2_PSD C2 domain prese 50.7 12 0.00027 39.0 2.8 40 2010-2050 1-46 (108)
278 cd08686 C2_ABR C2 domain in th 50.6 14 0.0003 39.7 3.1 36 2012-2050 1-40 (118)
279 cd04026 C2_PKC_alpha_gamma C2 50.5 14 0.00031 39.5 3.3 43 2008-2050 11-59 (131)
280 cd08401 C2A_RasA2_RasA3 C2 dom 50.5 15 0.00033 39.0 3.5 40 2011-2050 1-43 (121)
281 cd04046 C2_Calpain C2 domain p 50.4 11 0.00024 40.3 2.4 39 2010-2049 3-43 (126)
282 KOG2025 Chromosome condensatio 50.1 8.8E+02 0.019 33.6 26.7 200 474-706 85-292 (892)
283 cd08409 C2B_Synaptotagmin-15 C 50.0 13 0.00028 40.5 2.9 40 2010-2049 15-59 (137)
284 cd04043 C2_Munc13_fungal C2 do 49.8 14 0.00029 39.2 3.0 38 2012-2049 3-44 (126)
285 KOG3665 ZYG-1-like serine/thre 49.7 6.4E+02 0.014 35.3 19.3 157 148-310 494-676 (699)
286 KOG0301 Phospholipase A2-activ 49.3 2.1E+02 0.0046 38.7 13.7 161 609-777 561-728 (745)
287 cd08400 C2_Ras_p21A1 C2 domain 49.0 11 0.00025 40.2 2.3 38 2011-2049 5-42 (126)
288 KOG1566 Conserved protein Mo25 48.7 5.8E+02 0.013 32.1 16.3 197 554-755 75-288 (342)
289 COG5209 RCD1 Uncharacterized p 48.6 1.4E+02 0.003 35.4 10.7 112 99-226 115-231 (315)
290 KOG1820 Microtubule-associated 47.3 4.8E+02 0.01 36.9 17.5 177 437-622 258-444 (815)
291 KOG2611 Neurochondrin/leucine- 46.3 3E+02 0.0066 35.9 13.9 135 130-268 16-162 (698)
292 PF08167 RIX1: rRNA processing 45.8 1.2E+02 0.0025 34.4 9.8 116 85-206 26-146 (165)
293 cd08680 C2_Kibra C2 domain fou 44.2 20 0.00042 38.7 3.2 40 2010-2049 14-60 (124)
294 PF12530 DUF3730: Protein of u 43.6 6.5E+02 0.014 30.2 17.1 128 566-708 9-151 (234)
295 cd04037 C2E_Ferlin C2 domain f 43.6 23 0.00049 37.8 3.5 38 2012-2049 2-42 (124)
296 KOG1243 Protein kinase [Genera 42.7 1.2E+02 0.0027 41.0 10.5 187 591-794 329-515 (690)
297 PF13251 DUF4042: Domain of un 42.5 2.6E+02 0.0056 32.4 11.9 112 640-753 43-174 (182)
298 COG5218 YCG1 Chromosome conden 42.2 5.8E+02 0.013 34.4 15.6 123 84-230 91-213 (885)
299 cd08389 C2A_Synaptotagmin-14_1 41.7 23 0.0005 37.8 3.2 41 2010-2050 16-60 (124)
300 cd04025 C2B_RasA1_RasA4 C2 dom 41.6 20 0.00044 37.9 2.8 37 2012-2049 2-40 (123)
301 KOG1243 Protein kinase [Genera 41.5 93 0.002 42.2 9.1 191 676-892 327-517 (690)
302 cd04017 C2D_Ferlin C2 domain f 40.9 22 0.00047 38.5 2.9 38 2012-2050 3-42 (135)
303 cd08676 C2A_Munc13-like C2 dom 40.7 24 0.00052 39.5 3.2 31 2010-2040 28-60 (153)
304 KOG4464 Signaling protein RIC- 40.6 9.5E+02 0.021 31.2 21.1 154 87-244 48-227 (532)
305 PF14668 RICTOR_V: Rapamycin-i 39.5 89 0.0019 30.9 6.5 60 142-208 4-63 (73)
306 PF10363 DUF2435: Protein of u 39.4 66 0.0014 33.1 5.9 84 727-822 6-89 (92)
307 cd04040 C2D_Tricalbin-like C2 39.1 26 0.00056 36.4 3.1 39 2012-2050 1-41 (115)
308 PF14668 RICTOR_V: Rapamycin-i 38.7 1E+02 0.0022 30.4 6.8 65 102-171 5-70 (73)
309 cd08379 C2D_MCTP_PRT_plant C2 37.7 22 0.00048 38.5 2.3 38 2012-2050 2-44 (126)
310 PF14631 FancD2: Fanconi anaem 37.3 1.2E+03 0.027 35.3 20.1 139 638-786 432-575 (1426)
311 PF10363 DUF2435: Protein of u 36.7 84 0.0018 32.3 6.1 82 520-603 7-88 (92)
312 KOG3665 ZYG-1-like serine/thre 36.5 9.4E+02 0.02 33.7 17.8 173 497-688 494-676 (699)
313 KOG1949 Uncharacterized conser 36.4 6.9E+02 0.015 34.4 15.3 180 519-708 177-370 (1005)
314 cd03567 VHS_GGA VHS domain fam 36.3 2.8E+02 0.006 30.8 10.4 70 85-154 39-116 (139)
315 KOG1566 Conserved protein Mo25 35.8 1E+03 0.022 30.1 19.1 195 471-666 76-286 (342)
316 PF12530 DUF3730: Protein of u 35.7 2.8E+02 0.0061 33.2 11.4 124 1299-1434 34-166 (234)
317 KOG1992 Nuclear export recepto 35.6 1.5E+03 0.032 32.1 20.4 559 639-1230 4-649 (960)
318 PF11707 Npa1: Ribosome 60S bi 35.4 1E+03 0.022 30.0 19.6 159 681-841 58-237 (330)
319 cd08692 C2B_Tac2-N C2 domain s 34.3 36 0.00079 37.4 3.3 41 2008-2048 12-58 (135)
320 KOG2137 Protein kinase [Signal 33.7 4.8E+02 0.01 36.0 13.7 131 638-778 390-521 (700)
321 cd03569 VHS_Hrs_Vps27p VHS dom 33.4 2.3E+02 0.005 31.4 9.4 71 84-154 41-114 (142)
322 PF12031 DUF3518: Domain of un 32.9 72 0.0016 38.3 5.5 81 99-182 139-227 (257)
323 PF12031 DUF3518: Domain of un 31.7 95 0.0021 37.3 6.2 83 489-572 139-230 (257)
324 cd03561 VHS VHS domain family; 31.3 2.7E+02 0.0059 30.3 9.5 70 85-154 38-112 (133)
325 PF12054 DUF3535: Domain of un 30.5 7.8E+02 0.017 32.5 14.9 77 407-488 103-182 (441)
326 cd00275 C2_PLC_like C2 domain 30.4 42 0.0009 35.4 3.0 39 2011-2049 3-50 (128)
327 cd04027 C2B_Munc13 C2 domain s 30.2 45 0.00098 35.7 3.2 38 2011-2049 2-41 (127)
328 cd04021 C2_E3_ubiquitin_ligase 29.2 46 0.00099 35.6 3.0 40 2011-2050 3-43 (125)
329 cd03567 VHS_GGA VHS domain fam 29.2 88 0.0019 34.6 5.2 94 1529-1631 18-119 (139)
330 smart00288 VHS Domain present 29.2 2.6E+02 0.0057 30.5 8.9 70 85-154 38-111 (133)
331 smart00239 C2 Protein kinase C 29.1 52 0.0011 32.0 3.3 39 2011-2049 1-43 (101)
332 KOG2933 Uncharacterized conser 27.8 2.1E+02 0.0045 35.7 8.3 140 638-791 89-231 (334)
333 KOG4464 Signaling protein RIC- 27.4 1.3E+03 0.028 30.2 14.9 83 445-527 110-198 (532)
334 PF00790 VHS: VHS domain; Int 26.9 3.6E+02 0.0079 29.6 9.5 107 41-154 6-118 (140)
335 PF12830 Nipped-B_C: Sister ch 26.7 7.3E+02 0.016 28.6 12.4 70 127-208 10-79 (187)
336 PF14500 MMS19_N: Dos2-interac 26.2 1.3E+03 0.028 28.3 15.0 225 127-369 1-236 (262)
337 COG5209 RCD1 Uncharacterized p 24.8 4.3E+02 0.0093 31.6 9.7 138 655-795 118-269 (315)
338 cd03568 VHS_STAM VHS domain fa 24.7 1.5E+02 0.0032 33.0 6.0 73 679-753 37-110 (144)
339 PRK09169 hypothetical protein; 24.4 3.2E+03 0.07 32.5 54.7 68 84-152 163-233 (2316)
340 cd03561 VHS VHS domain family; 24.2 1.9E+02 0.0042 31.4 6.7 73 679-753 37-112 (133)
341 KOG1822 Uncharacterized conser 23.7 3.1E+03 0.067 32.0 21.1 112 560-674 878-996 (2067)
342 cd03568 VHS_STAM VHS domain fa 23.4 2.4E+02 0.0052 31.4 7.3 72 725-796 38-112 (144)
343 smart00288 VHS Domain present 23.2 1.2E+02 0.0027 33.0 5.0 77 1555-1635 34-114 (133)
344 PF14225 MOR2-PAG1_C: Cell mor 23.1 1.5E+03 0.032 27.9 19.0 177 83-286 63-252 (262)
345 cd03569 VHS_Hrs_Vps27p VHS dom 22.9 75 0.0016 35.2 3.3 77 1555-1631 38-117 (142)
346 PF11865 DUF3385: Domain of un 21.0 4.1E+02 0.0088 30.1 8.7 144 638-793 11-156 (160)
347 PF10521 DUF2454: Protein of u 20.9 2.8E+02 0.0061 34.1 8.0 111 1388-1498 118-254 (282)
348 PF00790 VHS: VHS domain; Int 20.7 4.7E+02 0.01 28.7 8.9 72 217-288 43-118 (140)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=0 Score=4198.14 Aligned_cols=2019 Identities=70% Similarity=1.046 Sum_probs=1955.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHH
Q 000145 28 TSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAAT 107 (2054)
Q Consensus 28 ~~~med~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~v 107 (2054)
...||||+++...+..++++|+..++++++++.++..|+.+++.++++|..|.++.|+||.|+.+|+++++.+|.+++.+
T Consensus 2 ~~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 2 TSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred CccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 34599999999999999999999877889999999999999999999999999889999999999999999999999999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 108 L~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
|.+++.+++++.++...|+||+|+++|++.+++.|+.|+.+|.+|+.++.+ ++..+..++..|+||.|+++++++++.+
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~-D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS-DHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcch-hhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 999999999999999999999999999999999999999999999985321 3333466778999999999999877666
Q ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLV 267 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL 267 (2054)
..+++.++.+|.|||.++++++..+.+.|+++.++.+|.++++..+..|+.+|.+++..+++.+..+.+.|+++.|++++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL 240 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999977777888899999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHH
Q 000145 268 GQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVY 347 (2054)
Q Consensus 268 ~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~ 347 (2054)
+++.+..+|+.|+++|.+++.++++.|+.+.+.||++.|++++..++++++++.+.+.+|++++++|+|++|+.++++..
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~ 320 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILY 320 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence 86667789999999999999998999999999999999999999999999888777889999999999999999999999
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
|.+.+.+++....+++.+|.++|..+.++ ++......+++..+++.|+.++++.++..+++.+..+|..+++|+.+++.
T Consensus 321 L~~ll~s~rd~~~~ada~gALayll~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 321 LGELSESPRSPAPIADTLGALAYALMVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHhhcccchHHHHHHHHhhHHHHHHhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 99999998888999999999999988877 33333446677788899999999998876789999999999999999999
Q ss_pred HhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc
Q 000145 428 VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
+.+.+++++|+.|+...+.+.|..++.+|.+++.++.+.+..|.+.|++|.|+++|++++..+|+.+++.|+|++..+++
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999987788
Q ss_pred hhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
++..+.+.|++|+|+++|.+++.++|+.|+|+|+|++.++++++..+.+.|++++|+++|+++++++|..++++|.++..
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888899999899999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 588 AADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 588 ~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
..+...+++++.++..+++.++..+.++++++....+..+..+.+....|+++.|+.+++++++++++.|+++|.+++.+
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 88888999999999999999999999999999887777777766666789999999999999999999999999999999
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~A 747 (2054)
+++++..++..|++++++.+|++++..+++.|+++|.+++.+..+ +++..+++.|+++||+++|++.+.++++.|+.+
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999985555 778888999999999999999999999999999
Q ss_pred HHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCch
Q 000145 748 LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2054)
Q Consensus 748 L~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~ 827 (2054)
|.|++.+++.+.++...|++++|+++|+++++++|++|+++|.+|+...+.++.+.+.+.++|.+.+|+++|++.+.+..
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999998888887
Q ss_pred hHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccH
Q 000145 828 DVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSI 907 (2054)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i 907 (2054)
...+|+++|+++++.+.+..+.+|+|....+.|..+++|++|+.+++|.+|++|+++|+++|+++|.++|+++...++||
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~ 877 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCI 877 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchH
Confidence 88899999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCceeehhhhHHHHHhcccchhhhHHHHhhcCCcHHHHHHHHHHhhhccCCCCCCcccccCCCccccccc
Q 000145 908 GALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAF 987 (2054)
Q Consensus 908 ~~La~~il~s~~~ev~~~~~~~~i~~~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~ 987 (2054)
++||+|+++++++|||+|||..+|||+|+|++++|+.|+++||.+.+|++||+|+++++...+.|+++.+++|..++..+
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (2102)
T PLN03200 878 SSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLF 957 (2102)
T ss_pred HHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcCCCCCcchhhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccccchhHHHHHHHHHHcc
Q 000145 988 QEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQ 1067 (2054)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~~~~~~~~~~ll~~lf~ 1067 (2054)
..-.+|..|+|++|+|+|+|+|||++||+||++||++||||||+|+|||||++|.+.||+++||++++||+++||+||||
T Consensus 958 ~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~ 1037 (2102)
T PLN03200 958 ADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQ 1037 (2102)
T ss_pred ccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999944599999999999999999999999
Q ss_pred CcccccchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhhcccccCCchhhhhhhh
Q 000145 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEE 1147 (2054)
Q Consensus 1068 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 (2054)
||||+|||+||++||+|+.+|||++.+|||||||+||||||||||||.|+|||||||+|+|+|+||+|+||++|++|+||
T Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e 1117 (2102)
T PLN03200 1038 DRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEE 1117 (2102)
T ss_pred ChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcHHHHHhhhcccccccchhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHHhcchhhHHHH
Q 000145 1148 FFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTK 1227 (2054)
Q Consensus 1148 ~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~~~~l~k 1227 (2054)
|+|++||||++||+||++||||+|+||||+||+|||||||++|||+.|+.||+.|.+|++||+.|+..|+|+|++|+|+|
T Consensus 1118 ~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k 1197 (2102)
T PLN03200 1118 FSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK 1197 (2102)
T ss_pred hhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhhcccccccchHhhhccchh
Q 000145 1228 YLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPP 1307 (2054)
Q Consensus 1228 ~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~a~~~~~~ 1307 (2054)
|||++++++.+.++.|+|+|||.|+++|++.++.+|++|||+|||.|++.+||+|+++|++||++|++|+++.|||||+|
T Consensus 1198 vLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~p 1277 (2102)
T PLN03200 1198 YLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQP 1277 (2102)
T ss_pred HHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccc
Q 000145 1308 LVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIA 1387 (2054)
Q Consensus 1308 l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a 1387 (2054)
||+||++|+++++++++.|||||+.|+.++...+.|||||+|+.|||||++++|++||+++++||++||+|+++|+++.+
T Consensus 1278 Lv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~ 1357 (2102)
T PLN03200 1278 LVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAA 1357 (2102)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHH
Confidence 99999999999999999999999888888888888899999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhHhhhhcchhhhhHhhhcccchhHHHHHHHHHHHhhcCCCchhHH
Q 000145 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ 1467 (2054)
Q Consensus 1388 ~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 1467 (2054)
+.||+|||.||.+++++++|.++++|+||+++|++++.+++|++++|+|..+++++|.++|.||+||.|++++||+||.|
T Consensus 1358 agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~E 1437 (2102)
T PLN03200 1358 ARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLD 1437 (2102)
T ss_pred hCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHhhhhCCCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCCCCCchhHHHHHHHHHHhhcCCc
Q 000145 1468 MVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQ 1547 (2054)
Q Consensus 1468 ~~~~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~ 1547 (2054)
|+++|+|+.++.+|+.+|+++|+.++|+||||+||+.|+||++|+|+|+|+|++++|++++.||||||||||||||||||
T Consensus 1438 mv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~ 1517 (2102)
T PLN03200 1438 MVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQ 1517 (2102)
T ss_pred HHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccchHHHHHhhcCChhHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHhhcchhhHHHHHHHHHHHHh
Q 000145 1548 SLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627 (2054)
Q Consensus 1548 ~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~ 1627 (2054)
|+++++|+|+|+|+|||+|||||+++|||+|||+|+||++++|||+|++||+||+||||++|+|++++||+|+||||+++
T Consensus 1518 ~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~ 1597 (2102)
T PLN03200 1518 CLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESIS 1597 (2102)
T ss_pred hhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhhcCCceeeehhhhccCCCCChhhHHhHHHHHhhhhccCccceeechHHHHHHHhhhhchhHHHHHhhhHHhh
Q 000145 1628 TSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIH 1707 (2054)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1707 (2054)
++|||+|+|+|||+||+|||+|+||||||+|||||++||+|++||+++|||+||++|||||+||+.|+|+++|+++|+++
T Consensus 1598 ~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~ 1677 (2102)
T PLN03200 1598 LSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVL 1677 (2102)
T ss_pred cccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCcHHHHHHhhhHHHHHHHHhhcccchhHHhHHHHHhcccccccccchhhhhccccccccCccccchhhhHHHHHh
Q 000145 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALA 1787 (2054)
Q Consensus 1708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1787 (2054)
|++|+|++|+|+|+||||+|+++||||||||+||||||+||||+||||||+|||+|+||||||||||||+|++|+|||||
T Consensus 1678 ~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1757 (2102)
T PLN03200 1678 ERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALA 1757 (2102)
T ss_pred HhcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccchhhhccChhHHHHHHHHhhhcCcchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhH
Q 000145 1788 LGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQ 1867 (2054)
Q Consensus 1788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1867 (2054)
||||||||||||+||+|||||||||+||||||||||||||||||||||||||||||||||||||||||||+|||||||+|
T Consensus 1758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1837 (2102)
T PLN03200 1758 LGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQ 1837 (2102)
T ss_pred hccchhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhhcCCcccccccchhhhhHHHhhhccchh
Q 000145 1868 AALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSE 1947 (2054)
Q Consensus 1868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1947 (2054)
||||||+||||||||||||||+||+|||+||||||+|+|||+||+||||+||+||||||+||+||+||||||+|||+|+|
T Consensus 1838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1917 (2102)
T PLN03200 1838 AALLIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSE 1917 (2102)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCCceEEEEEcCCcchhhcC
Q 000145 1948 AAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMG 2027 (2054)
Q Consensus 1948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2027 (2054)
||||++|||||||||+|++||+||+|||+|+||||||+|||||||||||||||||+|+|||||+|+|+||||+||+++||
T Consensus 1918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~ 1997 (2102)
T PLN03200 1918 AAQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMG 1997 (2102)
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEeeccCCCCcccceeee
Q 000145 2028 TTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2028 ~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
++|.||++++||||+|+||||++
T Consensus 1998 ~sdPyv~l~~g~~~~~kTkvvk~ 2020 (2102)
T PLN03200 1998 NTNAFCKLTLGNGPPRQTKVVSH 2020 (2102)
T ss_pred CCCCeEEEEECCCCcccccccCC
Confidence 99999999999999999999986
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-166 Score=1681.18 Aligned_cols=1591 Identities=24% Similarity=0.293 Sum_probs=1364.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCc---hh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE---DL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~e---e~ 117 (2054)
|..++..|+. .+...|+.++..|.+++.+ ++++..|.. .|+||.|+.+|++++++.|.+|+++|.+|+.+. .+
T Consensus 60 IP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 60 MPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 5556666654 4567789999999999988 577777777 899999999999999999999999999998763 34
Q ss_pred H-HHHHhcCChHHHHHhhccC---CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000145 118 R-LKVLLGGCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2054)
Q Consensus 118 r-~~v~~~GaIp~LV~LL~se---d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~ 193 (2054)
+ ..+...|+||.|+.++.+. |.-+++.++.+|.+|+.+. ....+.+++.|+||.|+++|.+++ +.++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~----en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~e 208 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST----DGFWSATLEAGGVDILVKLLSSGN---SDAQAN 208 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc----cchHHHHHHcCCHHHHHHHHcCCC---HHHHHH
Confidence 4 3355789999999999884 4456788899999999742 222357789999999999998654 568999
Q ss_pred HHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-
Q 000145 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN- 271 (2054)
Q Consensus 194 Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~-s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~- 271 (2054)
|+.+|.+++.+.+.....+.+.|+++.|+++|.++ ++.+++.|+++|.+|+..+++.+..+.+.|+++.|+.++..+.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~ 288 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSK 288 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcch
Confidence 99999999988665668889999999999999864 5689999999999999888889999999999999999997322
Q ss_pred -------ChhHHHHHHHHHHHHhhccHH-----------HH--HHH-HhcCCHHHHHHhhcCCchhhhhhhhhhhhh-hH
Q 000145 272 -------DISVRASAADALEALSSKSIK-----------AK--KAV-VAADGVPVLIGAIVAPSKECMQGQRGQALQ-GH 329 (2054)
Q Consensus 272 -------d~~Vr~~Aa~aL~nLs~~s~e-----------~R--k~I-~eaggL~~LIeLL~s~s~e~~q~~~~~~lq-e~ 329 (2054)
+...++.+.++|.|++.+... .| ..+ ...|+++.++..+..+... .+ . +. .+
T Consensus 289 e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~-~~-~----i~~~~ 362 (2102)
T PLN03200 289 EFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAES-TR-A----FDPTV 362 (2102)
T ss_pred hhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhh-hh-h----ccccc
Confidence 234689999999999885221 11 011 1135555555544432211 00 0 00 12
Q ss_pred HHHHHHHHhcCchhHHHHhhhhcCCCCch---hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhh
Q 000145 330 ATRALANIYGGMPALVVYLGELSQSPRLA---APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKL 406 (2054)
Q Consensus 330 Al~ALanLsGgis~lI~~L~elL~s~~~~---~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~ 406 (2054)
+.+.|.+ ++++++.. +.+..+|..+. .+...+..+.+.+.+++|+.|+...+.+
T Consensus 363 v~~~LV~--------------Llr~k~p~~vqe~V~eALasl~--------gN~~l~~~L~~~daik~LV~LL~~~~~e- 419 (2102)
T PLN03200 363 IEQILVK--------------LLKPRDTKLVQERIIEALASLY--------GNAYLSRKLNHAEAKKVLVGLITMATAD- 419 (2102)
T ss_pred cHHHHHH--------------HhCCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhccchhhhhhhhccCCHH-
Confidence 2333333 44444332 22233332211 1222234455667889999999998775
Q ss_pred HHHHHHHHHHHhhcC-hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 407 VQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n-~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
+|..++.+|..++.+ .+.++.+...++++.|+.+|.+++.+.|+.++..+++++..+++++..|++.|+||+|+++|++
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999999854 6888899999999999999999999999999999999998878899999999999999999999
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh----------------
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---------------- 549 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---------------- 549 (2054)
++..+|++|+|+|.|++.++++.+..+.+.|++++|+++|++++.++|+.|+++|.+|..+.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 9999999999999999986566777777899999999999999999999999999999643211
Q ss_pred ---------------------HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHH
Q 000145 550 ---------------------IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLAL 600 (2054)
Q Consensus 550 ---------------------~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~L 600 (2054)
.+......|+++.|+++++++++++++.|+|+|.+++... +.+++++++.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 0111224689999999999999999999999999998753 35789999999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~ 680 (2054)
|+.++.+++..++++|++++..... ..+..+.+.|++++|++++++++.++++.|+.+|.|++. +++.+.++.+.|+
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCc
Confidence 9999999999999999999864332 223345789999999999999999999999999999998 7888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHH--HHHHHHHhhC-----
Q 000145 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET--AVAALANLLS----- 753 (2054)
Q Consensus 681 V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~--Al~AL~NLa~----- 753 (2054)
+++|+++|++|++.+|++|+++|.+|+.+++.++.....+.+.|++.+|+++|+..|.+.... |+.+|.+|+.
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~ 816 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGA 816 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999977765557778899999999999999988777664 9999999965
Q ss_pred ---ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--chhHhhhhhh-hhhHHHHHHhh--------
Q 000145 754 ---DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--GDVLKGNAQC-RFVVLTLVDSL-------- 819 (2054)
Q Consensus 754 ---~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--~e~i~~~i~~-~g~v~~LV~LL-------- 819 (2054)
+|.+...+..++++.+||+++.+++|.++++|+++|.+||.++|. ++.+...-.| .....+.++..
T Consensus 817 ~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2102)
T PLN03200 817 NFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896 (2102)
T ss_pred CCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecc
Confidence 356777888999999999999999999999999999999999986 5555555445 44445555433
Q ss_pred -----ccCCCCchhHHHHHHHHHHHhh----------cc-------------------------cCCCccCCcccccccC
Q 000145 820 -----NAMDMNGTDVADALEVVALLAR----------TK-------------------------QGLNFTYPPWAALAEV 859 (2054)
Q Consensus 820 -----~sg~~~~~~~~~AL~ALa~La~----------~~-------------------------~~~~~i~~~~~~~~~~ 859 (2054)
+..+++.+...++++..+++.. .+ +.+....|....+...
T Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (2102)
T PLN03200 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTV 976 (2102)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchH
Confidence 2566777778888887666541 00 1112223556666778
Q ss_pred CCchHHHHHhhhcCChh--HHHHHHHHHHHhhccCCc-hhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHH-----
Q 000145 860 PSSIEPLVCCLAEGPPP--LQDKAIEILSRLCGDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI----- 931 (2054)
Q Consensus 860 ~~~L~~Lv~ll~~~~~~--vq~~Ai~iL~~L~~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i----- 931 (2054)
+.|+..+++..+++++. ++.+|+++|.+.+..+.+ +|++|+++++.||++|+++|+||+.+.+|.++||+.|
T Consensus 977 a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~ 1056 (2102)
T PLN03200 977 ALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLAN 1056 (2102)
T ss_pred HHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHh
Confidence 89999999999999988 699999999998888866 9999999999999999999999999999999999999
Q ss_pred ------HhcccchhhhHHHH----------------------hhcCCcHHHHHHHHHHhhhccCCCCCC-----------
Q 000145 932 ------CAAKEHKKQSMDAL----------------------DLSGYLKPLIYALVDMMKQNSSCSSLD----------- 972 (2054)
Q Consensus 932 ------~~~k~~~~~~~~~L----------------------~~~g~~~~~i~~Lv~l~~~~~~~~~~d----------- 972 (2054)
.+||||++|+|+|| +++||+++|+++|++|++||+++++||
T Consensus 1057 ~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~ 1136 (2102)
T PLN03200 1057 LLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136 (2102)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhh
Confidence 78999999999988 899999999999999999999999999
Q ss_pred -cccccCCCccccccccccCCCCcCCCCCcchhhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccc
Q 000145 973 -IEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051 (2054)
Q Consensus 973 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~ 1051 (2054)
||+ |+|+|+.||.++|+++|.|+|++.++.||..|..|+.+++.||..|.|+||+|+|++++ ++.++++.++
T Consensus 1137 ~ir~----~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvL---Sl~~s~s~e~ 1209 (2102)
T PLN03200 1137 DIRV----GATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYL---SLGPQDSTEE 1209 (2102)
T ss_pred hhcc----hHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH---HhcCccchhH
Confidence 666 99999999999999999999999999999999999999999999999999999999999 5556777777
Q ss_pred cchhHHHHHHHHHHccCcccccchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhh
Q 000145 1052 TEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131 (2054)
Q Consensus 1052 ~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (2054)
+ +.++|+|||.|++.+++..+.+++++|+.+||+|++..||.||++
T Consensus 1210 a-----~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~a----------------------------- 1255 (2102)
T PLN03200 1210 A-----ASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARA----------------------------- 1255 (2102)
T ss_pred H-----HHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHH-----------------------------
Confidence 7 999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhhhhhhcccCCcHHHHHhhhcccccccchhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCc
Q 000145 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDT 1211 (2054)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~ 1211 (2054)
|++||+.|++|....|++||||||+||..+.++.+. .++.+|++|..|+++
T Consensus 1256 ---------------------------L~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~--~a~~ALvkL~kd~is 1306 (2102)
T PLN03200 1256 ---------------------------LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH--AAIGALIKLSSGNPS 1306 (2102)
T ss_pred ---------------------------HHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhH--HHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999998 999999999999999
Q ss_pred chhHH--HhcchhhHHHHhhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhh
Q 000145 1212 NKLIM--AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289 (2054)
Q Consensus 1212 ~~~~~--~e~~~~~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l 1289 (2054)
++..| +|+|+|+.++||||.+|++++|+++++||++||+|+++|..+.+.|||.+||.+|..+++.+.+.|.++|++|
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99999 7999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccccccchHhhhccchhHHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHH
Q 000145 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369 (2054)
Q Consensus 1290 ~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a 1369 (2054)
++.|+.|+..++|+++.|+|.++.++++..+|.|++||+|+ +++++.++.+||++|+++.+|.+|+. ||.++|+.++
T Consensus 1387 c~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl--~~~~~~v~~Emv~~G~~~kllllLQ~-c~~~lkekAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKL--GKDRPPCKLDMVKAGIIERVLDILPE-APDSLCSAIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHH--hCCChHHHHHHHHhCHHHHHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCcccccCccc---------------------------------------------cchhhhhhhhhcCChhH
Q 000145 1370 ELCFIMFGNAKIIANPIA---------------------------------------------SECIQPLISLMQSDLSI 1404 (2054)
Q Consensus 1370 ~l~~~l~~~~~i~~~~~a---------------------------------------------~~~~~pli~l~~s~~~~ 1404 (2054)
||||+|+||+.|+++|+| ++.|+|||+||+|+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~ 1543 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQA 1543 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHH
Confidence 999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhhhcchhhhhHhhhcccchhHHHHHHHHHHHhhcCCCchhHHHhhhhhhhHhhhhC---
Q 000145 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL--- 1481 (2054)
Q Consensus 1405 ~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~~~~~--- 1481 (2054)
+||.++++|+||+..|+||+++.+++||.|||+++++|+.++||+|++||++++..||| +++++|||++++|++
T Consensus 1544 vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~---~v~~~ggv~~l~~~~~~~ 1620 (2102)
T PLN03200 1544 VQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPK---AVADAGGIFELSKVILQA 1620 (2102)
T ss_pred HHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHH---HHHHccCHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -CCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCCCCCchhHHHHHHHHHHhhcCCccccccccCcccch
Q 000145 1482 -PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVI 1560 (2054)
Q Consensus 1482 -~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i 1560 (2054)
|++|+.||+++|.|| +|+++++++|||+|++.++|+|.+++.|++|.+|+++|. ++|+.|+++++.|+++|+|
T Consensus 1621 d~~~~~~l~~~a~~vl-----~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~-~~~~~d~~~~~~~~~~g~i 1694 (2102)
T PLN03200 1621 DPQPPHALWESAASVL-----SNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALL-VLERDDSSSAEQMAESGAI 1694 (2102)
T ss_pred CCCCchhhHHHHHHHH-----HHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHH-HHHhcchhHHHHHHHhhhH
Confidence 999999999999999 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHh----------------hcchh-----------
Q 000145 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLA----------------GIGIL----------- 1613 (2054)
Q Consensus 1561 ~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~pl~~~~----------------~~~~~----------- 1613 (2054)
|+|+++||| |||||+++||||.||||+|+|++|+|||||+||+|.. ..|=+
T Consensus 1695 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (2102)
T PLN03200 1695 EALLELLRS--HQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTD 1772 (2102)
T ss_pred HHHHHHHHh--ccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhccchhhhhhhhccC
Confidence 999999999 9999999999999999999999999999999999963 11211
Q ss_pred ------------------hHHHHHHHHHHHH---hhhhhhHHhhcCCceeeehhhhccCCCCC-------------h---
Q 000145 1614 ------------------NLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPP-------------H--- 1656 (2054)
Q Consensus 1614 ------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 1656 (2054)
..|--||-||.+. |.+=-++||++|||.-+--.+.-.||+-. |
T Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200 1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence 1123345555554 55566799999999887777777777643 2
Q ss_pred -----------------hhHHhHH----------HHHhhhhccCccceeechHHHHHHHhhhhchhHHHHHhhhHHhhcc
Q 000145 1657 -----------------SLWESAA----------LVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709 (2054)
Q Consensus 1657 -----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1709 (2054)
+||-++. .++.|.=++...---+.-++-||--|.|++|.+=--||++|..+-.
T Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1932 (2102)
T PLN03200 1853 EYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQEAALDTLFLLRQ 1932 (2102)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4565544 3445543333333334567889999999999999999999988765
Q ss_pred cCcCc------HHHHHHhhhHHHHHHHHhhc--ccchhHHhHHHHHhcccccccccc
Q 000145 1710 TDASS------AEQMTQAGVIDALLDLLRSH--QCEETSGRLLEALFNNGRIRQMKV 1758 (2054)
Q Consensus 1710 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2054)
+=+.+ ++.|+-+-||--|--|.|+- +-.|-+.-|+|-|.-.-+||=.+.
T Consensus 1933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a 1989 (2102)
T PLN03200 1933 SWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRG 1989 (2102)
T ss_pred hhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeec
Confidence 54443 57788888888888888872 224778889999887766664443
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-28 Score=301.46 Aligned_cols=414 Identities=19% Similarity=0.206 Sum_probs=352.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccC--ccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhh
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s--~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.+.++..+.+.+.+.|..+...++.+.... +... .+...|.+|.++++++ ..++.+|..|+|+|.|+++++.+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPID-EVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHH-HHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 566778888888888999998888876542 2333 4445599999999997 55688999999999999998888999
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-hHHHHHHHHHHHHHHhh
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAA 589 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-evq~~AA~AL~nLs~~~ 589 (2054)
.++++|++|.|+++|.+++.+++++|+|+|+|++.++..+|..+.+.|++++|+.++...++ ...+++.|+|.||++..
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999987776 78899999999999773
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
+ ..+. -+.+. ..++.|..++++.|+++...|+|++++|+.+..
T Consensus 227 ~-------------P~P~------------------~~~v~------~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 N-------------PSPP------------------FDVVA------PILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred C-------------CCCc------------------HHHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 2 1111 11111 258999999999999999999999999999899
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHH
Q 000145 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAAL 748 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL 748 (2054)
+....+++.|+++.|+.+|...+..++..|.++++|+..++ |.+.+.+++.|+++.|..++.. ....++++|+|++
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 3688899999999999999994 5566999999999
Q ss_pred HHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCch
Q 000145 749 ANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2054)
Q Consensus 749 ~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~ 827 (2054)
.|+.. +++..+.+++.|.+|.|+.+|..++-++|..|+|+++|++.... ......+.+.|.+++++++|...+. +
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~--~ 422 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDV--K 422 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCCh--H
Confidence 99975 67778899999999999999999999999999999999998753 5556677888999999999964443 3
Q ss_pred hHHHHHHHHHHHhhcccCCCccC-CcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 828 DVADALEVVALLARTKQGLNFTY-PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~-~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
....++.+|.++-.......... +++....+..++++.+..+..+++.++..+|..++.+++.+.
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 48889999998875332211111 455566677889999999999999999999999999999875
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=274.16 Aligned_cols=432 Identities=19% Similarity=0.187 Sum_probs=363.4
Q ss_pred hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchh
Q 000145 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 430 ~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..+..++...++++.++.+|..+..++++++-+ .+++..|++.+|+.+|+.-+.++..++|..++++++||+.. +++|
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccch
Confidence 346678888899999999999999999999988 68889999999999999888888889999999999999985 8899
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
..+...|++.++.++-++.+..+|+++.++|.|++. ..++|+.++..|++|.|+.+++++++++|+.++.++.|++-+.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 999999999999998888899999999999999987 6778888889999999999999999999999999999997441
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc--ccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA--NKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~--~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
. .++.+.+ ...++.||+++.+++++++-.|..+|.||++
T Consensus 240 ~--------------------------------------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas- 280 (550)
T KOG4224|consen 240 R--------------------------------------ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS- 280 (550)
T ss_pred H--------------------------------------HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-
Confidence 1 1112222 3479999999999999999999999999998
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC-HHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVA 746 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d-~~Vre~Al~ 746 (2054)
+.+....+++.|.+|.+++++++..-........|+.|++. .+ .+..-+.+.|.++||+.+|..++ .+++-.|..
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi--hp--lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI--HP--LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc--cc--CcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 88999999999999999999988777777778899999986 33 56667899999999999999865 558999999
Q ss_pred HHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCC
Q 000145 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMN 825 (2054)
Q Consensus 747 AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~ 825 (2054)
+|.||+. +...+..|...|++|++..++.++.-.+|..-..|+..|+.+ +..+..+.+.|.++.|+.++.+..
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----d~~k~~lld~gi~~iLIp~t~s~s-- 430 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----DNDKEALLDSGIIPILIPWTGSES-- 430 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc----cccHHHHhhcCCcceeecccCccc--
Confidence 9999997 556678899999999999999999999999999999999986 445566677888898998885544
Q ss_pred chhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccc
Q 000145 826 GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSS 905 (2054)
Q Consensus 826 ~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~ 905 (2054)
...+-.|..+|+++++..+...+..-.|.... .+--..|.+.+.+..-.+++-|.-.+..+..++..++.+|+.+.+.
T Consensus 431 ~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i~~~dd 508 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFIQSSDD 508 (550)
T ss_pred hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHHhCchh
Confidence 44588899999999976543333333343221 2223456677777777789999999999999988889999988877
Q ss_pred cHHHHHHHHhc
Q 000145 906 SIGALADRIMH 916 (2054)
Q Consensus 906 ~i~~La~~il~ 916 (2054)
-| .+++.++.
T Consensus 509 ii-~~~~~~~~ 518 (550)
T KOG4224|consen 509 II-ELLNDIVA 518 (550)
T ss_pred HH-HHHHHHHH
Confidence 77 56665553
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.6e-27 Score=271.60 Aligned_cols=417 Identities=16% Similarity=0.188 Sum_probs=346.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcc-cCccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~-~s~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
+-|..-+-+.+.+.|..+..-++.+-. ....--+.+++.|.+|.+++++. ....-.+..|+|+|.|++++.......+
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 556666667788888888877776544 33334566778999999999995 5555678899999999999877777888
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh--hHHHHHHHHHHHHHHhhc
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~--evq~~AA~AL~nLs~~~e 590 (2054)
+++|++|.++++|.+++.++++++.|+|+|++.+++.+|..+.+.|++++++.++.+... ...+++.|+|.||++..+
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 899999999999999999999999999999999999999999999999999999987666 678999999999987632
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
..|+ -... ..+++.|..++.+.++++...|+|++.+|+.+..+
T Consensus 234 -------------P~P~------------------w~~i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 234 -------------PPPD------------------WSNI------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred -------------CCCc------------------hHHH------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHH
Confidence 1111 0011 12578888899999999999999999999998889
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
...++.+.|..+.|+++|.+.+..++..|.+.++|+..+. |.+...+++.|+++.+..+|.+....++.+|||.+.|
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC---ccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 9999999999999999999999999999999999998753 3677889999999999999999999999999999999
Q ss_pred hhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000145 751 LLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2054)
Q Consensus 751 La~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~ 829 (2054)
+.. +.+..+.+++.+.+|+|+++|...+-.+|..|||++.|.....-...++.+.+.+.|.+++|.++|...+... .
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki--i 431 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI--I 431 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc--h
Confidence 964 6777788999999999999999999999999999999998875555677888889999999999997554433 5
Q ss_pred HHHHHHHHHHhhcccC--CCccC--CcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCC
Q 000145 830 ADALEVVALLARTKQG--LNFTY--PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893 (2054)
Q Consensus 830 ~~AL~ALa~La~~~~~--~~~i~--~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~ 893 (2054)
.-+|+++.+.-+..+. ..... +.+..--+.++.++.+..|..+.+..+.++|..|+.+++++..
T Consensus 432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccch
Confidence 5567777776643211 11111 2233334567889999999999999999999999999998653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=263.78 Aligned_cols=390 Identities=22% Similarity=0.234 Sum_probs=340.4
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccc
Q 000145 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2054)
Q Consensus 395 Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~g 474 (2054)
...++.+.+.. +|-.+..++++++-+..++..+++..|+.+|+.-+.....++|..++.++.+++.. ++++..|...|
T Consensus 90 vl~llqs~d~~-Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQSCDKC-IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSG 167 (550)
T ss_pred HHHHHhCcchh-hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhcc
Confidence 33455555543 88899999999998888888888999999988888888899999999999999988 78999999999
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
++.++.++-++.+..+|.++..+|.|++. +.++|..++.+|++|.|+.+++++++++|..++.++.|++.+ ...|+.+
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKIL 245 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHH
Confidence 99999999999999999999999999997 789999999999999999999999999999999999999984 5667777
Q ss_pred HHcC--ChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000145 555 ESAG--AVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 555 ~e~G--aI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
.+.+ .++.|+.+++++++.++..|..+|.|++.+. +.+.+|.++++++++.-..-.....|+++++-..-.
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 8777 9999999999999999999999999999774 367899999999876554444556688887633211
Q ss_pred hHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
...+.+.|++++||.+++.+ +++++-+|+..|+||+..+..++..+.+.|+++.+..++.++...++..-..|+.
T Consensus 326 ----e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 326 ----EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ----ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 23478899999999999987 5669999999999999878889999999999999999999999999999999999
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHh------cCcHHHHHHHHcCCC
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL------EDVVSALTRVLAEGT 778 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~------~g~I~~LV~LL~s~~ 778 (2054)
.|+. . |..|..+.+.|.++.|+.+..+.+.+++..|+.+|.|++.+.+.-.++.+ +|.-..|++++.+..
T Consensus 402 ~Lal--~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~ 477 (550)
T KOG4224|consen 402 QLAL--N--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE 477 (550)
T ss_pred HHHh--c--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH
Confidence 9987 3 37788999999999999999999999999999999999987665444432 456678889999999
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000145 779 SEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~ 796 (2054)
..++.-+.|.+.+|..+.
T Consensus 478 ~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 478 LTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999999864
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-25 Score=273.86 Aligned_cols=397 Identities=17% Similarity=0.224 Sum_probs=339.8
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcC---hhhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGN---IFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWE 468 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n---~~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~ 468 (2054)
...+..+.+.+.. .+..+...+..+... +.+...+.. |.++.++..+.. .++..|..|+++|.++++.+.+.-.
T Consensus 69 ~~~~~~~~S~~~~-~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 69 ELMLAALYSDDPQ-QQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 3344444454443 577787788777543 345555555 999999999974 5599999999999999999888889
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHHHHHhcCC
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHS 547 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL~nLa~~s 547 (2054)
.+++.|.+|.+++++.+++..+++.|+|+|+|++.+++..|..+.+.|++++|+.++...+. ...++++|+|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999899999999999999999999988765 78999999999999876
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.-..+-.-..++|.|..++++.|+++...++|++.+|+... +.+++|.|+++|...+..++..+.+++||+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 432222223568999999999999999999999999999653 467899999999999999988889999986
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
. ...|...+.+...|+++.|..++. +..+.+|..|+|++.|++.++++..+++++.|.+|.|+.+|+.++.++|++
T Consensus 307 v---tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 307 V---TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred e---eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 4 445555666889999999999998 556779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------C---hHHHHHHHhcCcHHH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------D---PDIAAEVLLEDVVSA 769 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~------~---~e~r~~Iv~~g~I~~ 769 (2054)
|+||+.|++.+..+ ++-..+++.|+++||+++|...|.++...++.+|.|+.. . ......|.+.|++.+
T Consensus 384 AawaIsN~ts~g~~--~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 384 AAWAISNLTSSGTP--EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHhhcccCCH--HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 99999999985444 677789999999999999988999998899999999943 1 345667889999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..+-.+.+.++...|...+.+.....
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988877643
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=7.9e-23 Score=233.64 Aligned_cols=385 Identities=16% Similarity=0.176 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHhhc---ChhhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 407 VQERVLEAMASLYG---NIFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~---n~~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
.+..+..-...+.. ++.+ ..+...|+++.++.++.. ...-.|..|+++|.|++.........+++.|++|.++++
T Consensus 87 ~q~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql 165 (526)
T COG5064 87 QQLQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL 165 (526)
T ss_pred HHHHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH
Confidence 44555555555543 2233 345678999999999954 445568899999999999876666778899999999999
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
|.+++.++++.++|+|+|++..++..|..+...|++.+++.+|.++ +-.+.+++.|+|.||+.....-...-.-..++
T Consensus 166 L~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal 245 (526)
T COG5064 166 LSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245 (526)
T ss_pred HcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence 9999999999999999999998899999999999999999999877 45788999999999987432211111114578
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
|.|.+++.+.++++...|+|++..++..+ +.+..+.|+++|..++..++.-+.+.+|++... .|.....
T Consensus 246 piL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG---~D~QTqv 322 (526)
T COG5064 246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG---SDDQTQV 322 (526)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---Cccceeh
Confidence 99999999999999999999999998664 345668899999999999988888888887533 3334456
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
+...|+++.+-.+|.+..+.+|..|+|.+.|+..++.+...++++...+|+|+++|...+-.+++.|+||+.|...+...
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999884333
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----------Ch-HHHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----------DP-DIAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-----------~~-e~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
.++.-..++..|+++||+++|...+..+.+-++.++-|+.. ++ .....+.+.|++..+..+-.+.+.+
T Consensus 403 ~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~ 482 (526)
T COG5064 403 RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRT 482 (526)
T ss_pred CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccH
Confidence 34555678999999999999999887788888999988843 11 1234456689999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 000145 781 GKKNASRALHQLLKH 795 (2054)
Q Consensus 781 vr~~Aa~AL~nL~~~ 795 (2054)
+-.+|-.++......
T Consensus 483 iy~KAYsIIe~fFge 497 (526)
T COG5064 483 IYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHHHHHHHHccc
Confidence 999998887766543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=4.3e-17 Score=211.71 Aligned_cols=517 Identities=15% Similarity=0.149 Sum_probs=378.0
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhc
Q 000145 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLC 112 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~---s~evr~~AA~vL~~Ls 112 (2054)
..+..+...||.|=.. ..+|.++...+..|++.+++-..++.. .-.+..|...|+.. +.++-.+.+.++..+|
T Consensus 120 a~~~~~d~yiE~lYe~---~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYED---IPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4577888888888543 355888899999999999777776665 77899999999763 7788888899998888
Q ss_pred cCchhHHHHHhcCChHHHHHhhccCCHHHHHHHH-----HHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 113 KDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-----EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 113 ~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa-----~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
.-.+....+.....-..-++++.. +++..-. ......+.. .+..++.+-+ ....+-.+++. +
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~----~~~~~~~~~~--~~kk~~~l~~k---Q- 262 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEE----KPEAKKDYEK--ELKKLQTLIRK---Q- 262 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhcc----chhhhhhHHH--HHHHHHHHHHH---H-
Confidence 776666666554333333455533 2222221 111111110 1111111111 22344444432 2
Q ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLV 267 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL 267 (2054)
..+...+...|.|++.+.... ..|.+.|+++.|+++|.+.+.+....++.+|.+|+ ...+++..+.+.|+++.|.+++
T Consensus 263 eqLlrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHh
Confidence 245668889999999977544 67889999999999999999999999999999999 4455788899999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHH
Q 000145 268 GQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVY 347 (2054)
Q Consensus 268 ~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~ 347 (2054)
++ .+...+..+..+|.||+++ ++.|..|...|.+|.|+.++.++. .+..++..
T Consensus 341 ~s-~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~i-------------- 393 (708)
T PF05804_consen 341 PS-ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN-----------FREVALKI-------------- 393 (708)
T ss_pred cC-CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHH--------------
Confidence 84 5668899999999999995 999999999999999999887643 12223322
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
|.+++.++..+..
T Consensus 394 -------------------------------------------------------------------Ly~LS~dd~~r~~ 406 (708)
T PF05804_consen 394 -------------------------------------------------------------------LYNLSMDDEARSM 406 (708)
T ss_pred -------------------------------------------------------------------HHHhccCHhhHHH
Confidence 3333334444555
Q ss_pred HhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhc
Q 000145 428 VSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
+...++++.++.++.. +++.++..++..+.|++.+ +.+.+.+.+.+|++.|++.. +..++ --.+.++|++.|.
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD 481 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence 6666788888886654 4566777888899999988 67778888889999988754 44332 2447899999976
Q ss_pred cchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC--ChhHHHHHHHHH
Q 000145 506 DDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG--GPKGQDASAMAL 582 (2054)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~--~~evq~~AA~AL 582 (2054)
+..+..+. +.+.+|+.++.++ +++....+.++|+||+..+......+.+.+.+|-|..+|..+ .+++.-.++..+
T Consensus 482 ~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 482 GPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred chHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 56665553 4678888888776 788999999999999987777888888899999999999765 357888888999
Q ss_pred HHHHHhh-------chhhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHH
Q 000145 583 TKLIRAA-------DSATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN 653 (2054)
Q Consensus 583 ~nLs~~~-------e~~~Ip~Lv~LL~~~--~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~ev 653 (2054)
+.++.++ +.+.++.|+++|+.. |++...+...+...+ ..+++.+...+.+.+++..|+.++++.|.++
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l---l~h~~tr~~ll~~~~~~~ylidL~~d~N~~i 636 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL---LFHEETREVLLKETEIPAYLIDLMHDKNAEI 636 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH---HcChHHHHHHHhccchHHHHHHHhcCCCHHH
Confidence 9988764 357899999999853 344444444444444 4456666666777889999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhhhhh
Q 000145 654 QEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~I 675 (2054)
|..|-.+|--++..+++-...+
T Consensus 637 r~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 637 RKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHHHHHHHHhCHHHHHHh
Confidence 9999999999888665544443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=6e-17 Score=210.38 Aligned_cols=373 Identities=16% Similarity=0.158 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
+..-+...|.|++.+..+...+.+.+++++|+.++.+++.+.+..++.+|.+++.. .+++..+.+.|.++.|.+++.++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC
Confidence 44456677999999999999999999999999999999999999999999999998 68999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
+...+..++++|.||+. +++.|..+++.|.+|.|+.+|.++ ..+..+..+|++|+. +++.|..+...+++|.++.+
T Consensus 344 ~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999 689999999999999999999864 466779999999998 56788999999999999986
Q ss_pred h-ccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccc
Q 000145 567 L-KSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2054)
Q Consensus 567 L-kS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~Ga 638 (2054)
+ ..+++++.......+.|++.+.. .+.++.|++......+ ......++|++.+... .+..+ .+.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~---~k~~f--~~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP---LKELF--VDF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch---HHHHH--HHH
Confidence 5 44667777788899999987742 3567777777654332 2345678888765321 22222 246
Q ss_pred hHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCcccc
Q 000145 639 LRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 639 I~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
+..|+..+..+ +++..-.+.++|+||...+.+....+.+.+.++.|.++|..+ .+.+..++...++.++. .+ .
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~--~ 567 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP--E 567 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH--H
Confidence 88888888765 788899999999999874444455555679999999999865 45788889999998886 22 5
Q ss_pred hhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 716 NKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~-~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
....+.+.|.++.|+++|+. .|.+..-+.+.++..|..+++.|..+++ .+++..|+.++++.++++|+-|-.+|-=+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66677889999999999987 5788888999999999999999998765 67788899999999999999999999888
Q ss_pred hhcC
Q 000145 793 LKHF 796 (2054)
Q Consensus 793 ~~~~ 796 (2054)
+...
T Consensus 648 ~e~d 651 (708)
T PF05804_consen 648 AEYD 651 (708)
T ss_pred HHhC
Confidence 7754
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.73 E-value=1.6e-16 Score=201.73 Aligned_cols=379 Identities=17% Similarity=0.187 Sum_probs=285.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc--hhhH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD--SKWA 511 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e--~r~~ 511 (2054)
.+-.+.++.+.++.+|.+|+..+.++|+.+...+..+.+.|||+.|+.++.+.+.+++..|+++|+||...... ++..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 44567778899999999999999999999888899999999999999999999999999999999999987655 8999
Q ss_pred HHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc
Q 000145 512 ITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e 590 (2054)
|.+.++++.++++|+. .|.++++..+++|+||+.+ |..+..+. ..++..|...+-.+... + .+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sg------------w--~~ 378 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSG------------W--EE 378 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccc------------c--CC
Confidence 9999999999999986 6999999999999999985 55555443 33444444322110000 0 00
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc------CCHHHHHHHHHHHHHH
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS------SNEENQEYAASVLADL 664 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks------~s~evre~Aa~ALanL 664 (2054)
+-.+ -+..+.++...+.+||+|++.. ..+..++.-...|.|+.|+.++++ .+....|+|+++|.||
T Consensus 379 -~~~~-----~~~~~~~vf~n~tgcLRNlSs~--~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL 450 (717)
T KOG1048|consen 379 -EPAP-----RKAEDSTVFRNVTGCLRNLSSA--GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL 450 (717)
T ss_pred -CCcc-----cccccceeeehhhhhhccccch--hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence 0000 1222445667788888887632 344556666678899999998873 3788899999999999
Q ss_pred hhcCh-------------------------------hhhh----------------------hhhhCCCHHHHHHHhc-c
Q 000145 665 FSMRQ-------------------------------DICG----------------------SLATDEIVNPCMRLLT-S 690 (2054)
Q Consensus 665 as~~~-------------------------------e~r~----------------------~Iv~~g~V~~Lv~LL~-d 690 (2054)
...-. ...+ ..+...+|..-..++. +
T Consensus 451 SYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s 530 (717)
T KOG1048|consen 451 SYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS 530 (717)
T ss_pred CchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh
Confidence 76311 0000 0222335556555554 4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCc-ccchhHHH-HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHH
Q 000145 691 NTQMVATQSARALGALSRPTKT-KTTNKMSY-IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVS 768 (2054)
Q Consensus 691 gs~~vr~~AA~AL~nLs~s~~~-~d~~r~~I-~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~ 768 (2054)
.++.+.+.++.||.|++.+.+. .+..+..+ .++.+.++|+++|+.++++|...++.+|.||+.|+.++..|. .++++
T Consensus 531 ~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~ 609 (717)
T KOG1048|consen 531 KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIP 609 (717)
T ss_pred cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHH
Confidence 5788999999999999984443 23445545 778899999999999999999999999999999999998887 68999
Q ss_pred HHHHHHcCCC------HHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 769 ALTRVLAEGT------SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 769 ~LV~LL~s~~------~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.|+++|.+.. +++-..++..|.|+...+ -..+.+....+++++|+.+..+ ....+....|-..|..|-.
T Consensus 610 ~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~---~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 610 DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN---VLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh---HHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence 9999998763 588889999999999765 3455566667899999999986 4444455566556665543
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=8.8e-16 Score=195.05 Aligned_cols=421 Identities=20% Similarity=0.166 Sum_probs=301.1
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~ 205 (2054)
-+|..+.+|.+.++.++..|+.-|..+|.+ +...++.+.+.|+|+.|+.+|...+ ..++..|+++|+||.-++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg----d~~ik~~vrqlggI~kLv~Ll~~~~---~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG----DNKIKSRVRQLGGIPKLVALLDHRN---DEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh----hHHHHHHHHHhccHHHHHHHhcCCc---HHHHHHHHHHHHhhhccc
Confidence 367888899889999999999999999984 6678889999999999999999877 469999999999999998
Q ss_pred Cc--hhHHHHhhCChHHHHhhhcc-CCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC---------C--
Q 000145 206 DG--YWRATLEAGGVDIIVGLLSS-DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN---------N-- 271 (2054)
Q Consensus 206 e~--r~~aI~eaGGI~~LV~LL~s-~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~---------~-- 271 (2054)
.+ ++..|.+.+||+.++++|.. .+.++++.+..+||||+.. +..+..+...++..|..-.-.. .
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 76 88899999999999999987 6789999999999999955 2233333334555554433211 1
Q ss_pred --ChhHHHHHHHHHHHHhhccHHHHHHHHh-cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH-H
Q 000145 272 --DISVRASAADALEALSSKSIKAKKAVVA-ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV-Y 347 (2054)
Q Consensus 272 --d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~e-aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~-~ 347 (2054)
+..+-..+..+|.|+++.+.+.|+.|.+ .|.++.|+-.+..- ...+.+.+..-++|+|.|.|++.-+...++ .
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~---i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA---IQKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH---HHhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 2456678999999999988999999988 77889998777531 111223344668999999998754332211 0
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC--CChhhHHHHHHHHHHHhhcChhhh
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP--HDNKLVQERVLEAMASLYGNIFLS 425 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~--~~~e~Vq~~Aa~AL~~L~~n~~~~ 425 (2054)
..+.+.+... +. ...... +....+....+. ...+++ .+-....++.-.
T Consensus 462 ~~~~~~~~~~----------------~~--~~~~~~------~~~gcf~~k~~k~~~~~~~~------~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 462 YRQVLANIAR----------------LP--GVGPPA------ESVGCFGFKKRKSDDNCDDL------PIPERATAPKGS 511 (717)
T ss_pred hhhHhhcccc----------------cc--cCCCcc------cccccccchhhhchhccccc------CCcccccCCCCc
Confidence 0000000000 00 000000 000001000000 000000 000112233344
Q ss_pred HHHhhcchHHHHHHHhc-cCCHHHHHHHHHHHHHhcccCc----cchhhh-hccccHHHHHhhhcCCChhhhHHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREV----GIWEAI-GKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls~~s~----e~r~~I-ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2054)
.++++...+++.+.++. +.++.+.+.++.+|.|++.... ..+..+ .+..|.|.++++++.+++.+.+.++.+|+
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 56788888888666665 4568899999999999986532 234444 67789999999999999999999999999
Q ss_pred HHhhhccchhhHHHhhCCCchHhhhhhcC------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc-CCh
Q 000145 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGP 572 (2054)
Q Consensus 500 nLs~~s~e~r~~I~~aGaIp~LV~LL~s~------s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS-~~~ 572 (2054)
||+. +..++..|- .++++.|++.|..+ +.++...++.+|.|+...+..+.+-+.+.++++.|+.+.++ .++
T Consensus 592 Nls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 592 NLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSP 669 (717)
T ss_pred hhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCH
Confidence 9999 677877776 77999999999654 47889999999999998777777777889999999998877 456
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 000145 573 KGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e 590 (2054)
..-+.|...|..|....+
T Consensus 670 k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887643
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=8.9e-13 Score=152.62 Aligned_cols=376 Identities=17% Similarity=0.182 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc--HHHHHHHhhhcCcHHHHHHHHcc---CCHHHHHHHHHHHHHhccCc
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAK--KEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLCKDE 115 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~--d~ar~~I~~~aGgVp~LV~LLks---~s~evr~~AA~vL~~Ls~~e 115 (2054)
+.+++..++.+-. +.-++....|.+++.+. +.+.++.....|+.+.++-++.. ++..+..++..+|..+.
T Consensus 61 i~~~~~~i~e~i~--~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--- 135 (461)
T KOG4199|consen 61 INETVDKIKEHIG--QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT--- 135 (461)
T ss_pred HHHhHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---
Confidence 5555555544321 12233444555554322 23444444447888888877654 45556666666665553
Q ss_pred hhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000145 116 DLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2054)
Q Consensus 116 e~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~ 193 (2054)
..+..+....+...++++|.. ++.++.....+.+..-|. ..+.+|+.+++.|+.+.+.+.|...++. .+...
T Consensus 136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~----~hE~nrQ~~m~~~il~Li~~~l~~~gk~--~~VRe 209 (461)
T KOG4199|consen 136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI----MHEVNRQLFMELKILELILQVLNREGKT--RTVRE 209 (461)
T ss_pred cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHcccCcc--HHHHH
Confidence 455567788899999999987 688898888899998887 3678999999999999999888877654 36778
Q ss_pred HHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCCh
Q 000145 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2054)
Q Consensus 194 Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~ 273 (2054)
+.++++-|..+++-|..+ .....+| +.+...|++..|+..++..-++
T Consensus 210 l~~a~r~l~~dDDiRV~f------------------g~ah~hA---------------r~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 210 LYDAIRALLTDDDIRVVF------------------GQAHGHA---------------RTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HHHHHHHhcCCCceeeec------------------chhhHHH---------------HHHHHhhhHHHHHHHHHccCCc
Confidence 899999998887765110 1122222 3445567788888888766677
Q ss_pred hHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcC
Q 000145 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQ 353 (2054)
Q Consensus 274 ~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~ 353 (2054)
.+-.....+|+.|+.. ++.++.+.+.||++.|++.+.+....- .+
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~--------~r-------------------------- 301 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQG--------NR-------------------------- 301 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhh--------HH--------------------------
Confidence 7788889999999995 999999999999999999776533110 00
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcch
Q 000145 354 SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2054)
Q Consensus 354 s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~ 433 (2054)
..-..++..|..++++++++..+++.++
T Consensus 302 ----------------------------------------------------~l~k~~lslLralAG~DsvKs~IV~~gg 329 (461)
T KOG4199|consen 302 ----------------------------------------------------TLAKTCLSLLRALAGSDSVKSTIVEKGG 329 (461)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhCCCchHHHHHHhcC
Confidence 0123444556677888899999999999
Q ss_pred HHHHHHHhc--cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchh
Q 000145 434 KKVLIGLIT--MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 434 I~~LI~LL~--ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
.+.++.++. +.++.+...++.+++.++...+++...+++.|+-...++.++-. ...+|+++++.++|+..++.+++
T Consensus 330 ~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 330 LDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999988764 46788888899999999999899999999999988888888754 34589999999999999888888
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd 548 (2054)
..+... |++.|+..-+...+..+..+..+|+.|+++..
T Consensus 410 ~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v~ 447 (461)
T KOG4199|consen 410 TILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDVY 447 (461)
T ss_pred chHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence 877765 78899998889999999999999999998644
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.58 E-value=7.3e-14 Score=180.98 Aligned_cols=365 Identities=17% Similarity=0.160 Sum_probs=285.5
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCC---HHHHHHHHHHHHHhcccCccchhhh
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT---ADVREYLILSLTKLCRREVGIWEAI 470 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd---~evq~~Aa~AL~~Ls~~s~e~r~~I 470 (2054)
.|..++...+. +...+.+..+..++.-+..+...+++++|++++.-.+ .+.+.+|-.+|.|+....++.+..-
T Consensus 201 sllsml~t~D~----ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE----EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH----HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 44455555543 4556777778888888888999999999999996644 5778889999999988777665444
Q ss_pred hccccHHHHHhh----------hcCCC-------hhhhH-HHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC----
Q 000145 471 GKREGIQLLISL----------LGLSS-------EQHQE-YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---- 528 (2054)
Q Consensus 471 ve~ggIp~LV~L----------L~s~d-------~~Vr~-~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~---- 528 (2054)
.+...++.|-++ +.... ...+. .|++.|.++++ ++++|..+.+.|++..+.+|+.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 444455444322 22111 12333 78888999998 799999999999999999987421
Q ss_pred --------CHHHHHHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000145 529 --------SQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2054)
Q Consensus 529 --------s~~Vre~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~ 599 (2054)
...+|..+..+|.||+..+..++..+. ..|.++.+|..|.+...++..-.+..|.||+...+.+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n------- 428 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN------- 428 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc-------
Confidence 246799999999999997776666554 4799999999999998899999999999998764321
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH-HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 600 LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
. ++.+.+.|-+..|+. .++..++.+......+|+||+.+..+++..|...
T Consensus 429 --------m---------------------KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV 479 (2195)
T KOG2122|consen 429 --------M---------------------KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV 479 (2195)
T ss_pred --------H---------------------HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc
Confidence 1 111233445555555 3555677788889999999999999999999886
Q ss_pred -CCHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 679 -EIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 679 -g~V~~Lv~LL~dg----s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
|++..|+.+|... +-.+.+.|-..|.|.+...-.....|+.+.+...+..|+..|++.+-.+..++|++|+||+.
T Consensus 480 DGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 480 DGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred cchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 8899999999754 44677888899999887222223788889999999999999999999999999999999975
Q ss_pred -ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCc
Q 000145 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVG 799 (2054)
Q Consensus 754 -~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~ 799 (2054)
+++-++.+.+.|+++.|-.++++.|.++-+-++.+|.||....|..
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 8889999999999999999999999999999999999999987653
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=4.8e-13 Score=173.62 Aligned_cols=360 Identities=16% Similarity=0.146 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCC---HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc
Q 000145 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN---AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 192 e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s---~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
+...+.|..+++..+.. ..++..|+++.|+++|..++ .+.+..+-.+|+|+...+++......+..++..|-++..
T Consensus 212 ee~ar~fLemSss~esC-aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIra 290 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPESC-AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRA 290 (2195)
T ss_pred HHHHHHHHHhccCchhh-HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence 34567788888876655 88999999999999997654 578889999999999888776666555555555443322
Q ss_pred ----------c------CCChhHHH-HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHH
Q 000145 269 ----------Q------NNDISVRA-SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHAT 331 (2054)
Q Consensus 269 ----------s------~~d~~Vr~-~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al 331 (2054)
. +...+-+. .|..+|..++++ ++.|+.|.+.||++.|-+++.-.. +
T Consensus 291 YC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh---------------~- 353 (2195)
T KOG2122|consen 291 YCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH---------------E- 353 (2195)
T ss_pred HHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH---------------H-
Confidence 0 11123344 566678888885 999999999999888877542100 0
Q ss_pred HHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHH
Q 000145 332 RALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERV 411 (2054)
Q Consensus 332 ~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~A 411 (2054)
||. +.. .+...-.+|.++
T Consensus 354 -----------------------------------------mhg---p~t------------------nd~~~~aLRrYa 371 (2195)
T KOG2122|consen 354 -----------------------------------------MHG---PET------------------NDGECNALRRYA 371 (2195)
T ss_pred -----------------------------------------hcC---CCC------------------CcHHHHHHHHHH
Confidence 000 000 000011278899
Q ss_pred HHHHHHh-hcChhhhHHHhh-cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc-hhhhhccccHHHHHh-hhcCCC
Q 000145 412 LEAMASL-YGNIFLSQWVSH-AEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQLLIS-LLGLSS 487 (2054)
Q Consensus 412 a~AL~~L-~~n~~~~~~L~~-~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~-r~~Ive~ggIp~LV~-LL~s~d 487 (2054)
.++|.|| +++..++..+.. .++++.+|..+.+..++.+...+..|+||++.-+.+ +..+.+.|.+-.|.. .++...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 9999999 566677766654 578999999999999999999999999999975544 556667787888877 455666
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHh-hCCCchHhhhhhcC----CHHHHHHHHHHHHHHhc---CChhHHHHHHHcCC
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAG----SQKAREVAAHVLWILCC---HSEDIRACVESAGA 559 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~-aGaIp~LV~LL~s~----s~~Vre~AA~aL~nLa~---~sd~~r~~I~e~Ga 559 (2054)
+......+.+||||+.|+.+|+..|.+ .|++..||.+|... ...+-+.+-++|.|.+. ..+.+|.++.+.++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 678888999999999999999999986 48899999998543 56788999999999865 46788999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
+..|+..|++.+-.+..+++.+||||+.. +++ -++.+.+.|++
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR----------------~p~---------------------DQq~LwD~gAv 574 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSAR----------------SPE---------------------DQQMLWDDGAV 574 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcC----------------CHH---------------------HHHHHHhcccH
Confidence 99999999999999999999999999743 111 13446788999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
..|..++++.+..+-+.++.+|.||....
T Consensus 575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999998754
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.49 E-value=7.7e-11 Score=140.15 Aligned_cols=492 Identities=14% Similarity=0.075 Sum_probs=325.5
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHH-HHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchh
Q 000145 41 VAKFLEQLHANMSSP--QERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~--~ere~AL~~L~~-La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~ 117 (2054)
+-..+++|+..+-++ ..-+.++.++.. ++..+.+.-.-+. .||+ ...+..+.......+...++.+--
T Consensus 5 lsD~lkKLKiTaVd~teds~~~C~~~~~qa~a~~nt~t~ek~~--~~~i-------~~~~~tv~~~qssC~A~~sk~ev~ 75 (604)
T KOG4500|consen 5 LSDTLKKLKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQ--ASGI-------MTASDTVYLFQSSCLADRSKNEVE 75 (604)
T ss_pred HHHHHHHhhccccCcccchhHHHHHHHHHhHhhhChhhHHHHH--hcce-------eeccchhhhhhHHHHHHHhhhHHH
Confidence 445667776543332 123444444432 3333322222222 2333 233455666677777777777766
Q ss_pred HHHHHh----cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC----hh
Q 000145 118 RLKVLL----GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD----NV 189 (2054)
Q Consensus 118 r~~v~~----~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d----~~ 189 (2054)
|..+.. +|++..|.+..+++|.++-..+.++|+|+|.. ++++|..+.+.||-..+++.|+.-...+ ..
T Consensus 76 r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd----n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~ 151 (604)
T KOG4500|consen 76 RSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYD----NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEE 151 (604)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhcc----CchhHHHHHhcCCceehHhhhccccccCCccHHH
Confidence 666654 46777888888888999999999999999984 5789999999999888888887432111 23
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHh-hcCCCcchhcccchHHHHHHH
Q 000145 190 VQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLML-AFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 190 V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~-~~~~~r~~i~~sGaL~~LL~L 266 (2054)
...-+.+.|.|..-+.++-+..+.+.|.++.|...+.-+ +.+..+.......+|.. ..+...+...+....-.++++
T Consensus 152 ~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~l 231 (604)
T KOG4500|consen 152 YSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQL 231 (604)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHH
Confidence 455677889999998888889999999999999888654 33333444333334331 111112333456677788888
Q ss_pred hccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH
Q 000145 267 VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV 346 (2054)
Q Consensus 267 L~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~ 346 (2054)
+.+.-.+..+++...++...+. |+..+-.+.+.|-+..+++++......... +-...-+-.++.
T Consensus 232 l~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k--------~d~~~l~k~~~e------- 295 (604)
T KOG4500|consen 232 LPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKK--------TDMLNLFKRIAE------- 295 (604)
T ss_pred HHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccch--------HHHHHHHHhhhh-------
Confidence 8766667788888888888888 588888889999999999988662211000 001100001110
Q ss_pred HhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhH
Q 000145 347 YLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426 (2054)
Q Consensus 347 ~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~ 426 (2054)
...-+.. +.++....+....+-+.+..++++.+.+ .+....-+++|++++++++.
T Consensus 296 -----------------l~vlllt-------GDeSMq~L~~~p~~l~~~~sw~~S~d~~-l~t~g~LaigNfaR~D~~ci 350 (604)
T KOG4500|consen 296 -----------------LDVLLLT-------GDESMQKLHADPQFLDFLESWFRSDDSN-LITMGSLAIGNFARRDDICI 350 (604)
T ss_pred -----------------Hhhhhhc-------CchHHHHHhcCcHHHHHHHHHhcCCchh-HHHHHHHHHHhhhccchHHH
Confidence 0000000 1111122233333557788899988776 67888889999999999999
Q ss_pred HHhhcchHHHHHHHhcc-----CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHH
Q 000145 427 WVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~s-----sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2054)
.+++.+.+..|++++.. ++-+.|..+..+|+|+... ..++..+...|..+.++.+++...+.++..-...++-+
T Consensus 351 ~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 351 QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMI 429 (604)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 99999999999998854 4566788888999999988 67888888899999999999999988888777777666
Q ss_pred hhhccchhhHHHh-hCCCchHhhhhhcCCH-HHHHHHHHHHHHHhcCCh--hHHHHHHHcCChHHHHHhhccCChhHHHH
Q 000145 502 TEQVDDSKWAITA-AGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHSE--DIRACVESAGAVPAFLWLLKSGGPKGQDA 577 (2054)
Q Consensus 502 s~~s~e~r~~I~~-aGaIp~LV~LL~s~s~-~Vre~AA~aL~nLa~~sd--~~r~~I~e~GaI~aLV~LLkS~~~evq~~ 577 (2054)
...-+...-.+.+ ..-+..|+..-+++|- .+-..+-+.+..|..|+. ++-..+.+.|+|..++.++.+..-..|..
T Consensus 430 ~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnE 509 (604)
T KOG4500|consen 430 RDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNE 509 (604)
T ss_pred HhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHH
Confidence 5421111111111 1234455555566654 366777788888877632 33445667899999999998888888888
Q ss_pred HHHHHHHHHH
Q 000145 578 SAMALTKLIR 587 (2054)
Q Consensus 578 AA~AL~nLs~ 587 (2054)
+.-+|..+..
T Consensus 510 alVal~~~~~ 519 (604)
T KOG4500|consen 510 ALVALLSTES 519 (604)
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 17
>PRK09687 putative lyase; Provisional
Probab=99.48 E-value=9.5e-13 Score=157.47 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=206.1
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.++.|..++.+.+..+|..++.+|..+.. ...++.+..++++.++.+|..++++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 46789999999999999999999998865 23567788889999999999999999999753211
Q ss_pred HHcCChHHHHHh-hccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 555 ESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 555 ~e~GaI~aLV~L-LkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
...+++.|..+ +++.++.++..++.+|+++.... ....++.+...+.++++.|+..+..+|+.+
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------- 155 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------- 155 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----------
Confidence 12456777766 68889999999999999996432 234567788888899999999999998754
Q ss_pred hhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
....+++.|+.+++++++.+|..|+.+|.++... ...+++.|+.++.+.++.+|..|+++|+++..
T Consensus 156 ---~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 ---NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred ---CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 2234699999999999999999999999998432 13567889999999999999999999999753
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRAL 789 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s~~~evr~~Aa~AL 789 (2054)
+ .++++|++.|.+++ ++..++.+|+++. .+.++|.|.+++. +.|+.++.+|.++|
T Consensus 222 ~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig----------~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 K------------RVLSVLIKELKKGT--VGDLIIEAAGELG----------DKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred h------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC----------CHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2 38999999999876 6778999999876 3468999999996 77999999999998
Q ss_pred HH
Q 000145 790 HQ 791 (2054)
Q Consensus 790 ~n 791 (2054)
..
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 64
No 18
>PRK09687 putative lyase; Provisional
Probab=99.45 E-value=3.4e-12 Score=152.70 Aligned_cols=253 Identities=18% Similarity=0.098 Sum_probs=204.1
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--chhh
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSAT 593 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--e~~~ 593 (2054)
-.++.|..+|.+.+..+|..++.+|..+.. ..+++.+..+++++++.+|..++++|+.+.... ....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 467899999999999999999999998863 346777888999999999999999999996532 2357
Q ss_pred HHHHHHH-hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh
Q 000145 594 INQLLAL-LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 594 Ip~Lv~L-L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r 672 (2054)
++.|..+ +++.++.|+..+..+||.+....... ...++..+...+.++++.+|..++.+|.++..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY--------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 8888887 67788899999999999874321111 12246777788888999999999999987754
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+++.|+.+|++.++.+|..|+.+|+++....+ .++++|+.+|.+.+.+|+..|+.+|+.+.
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP------------DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH------------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 5578999999999999999999999999843212 37888999999999999999999999764
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHH
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADA 832 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~A 832 (2054)
...+++.|++.+.+++ ++..|+.+|++++.. .+++.|..++... .+...+..|
T Consensus 221 ----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~-~d~~v~~~a 273 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKF-DDNEIITKA 273 (280)
T ss_pred ----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhC-CChhHHHHH
Confidence 4468999999998876 677899999999873 3778899998622 355567777
Q ss_pred HHHHH
Q 000145 833 LEVVA 837 (2054)
Q Consensus 833 L~ALa 837 (2054)
.+++.
T Consensus 274 ~~a~~ 278 (280)
T PRK09687 274 IDKLK 278 (280)
T ss_pred HHHHh
Confidence 77764
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=1.9e-11 Score=167.71 Aligned_cols=276 Identities=20% Similarity=0.170 Sum_probs=226.1
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
..++.|+..|.+.++.++..|+..|..+.. .+.++.|++++++++..+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 456789999999999999999999988753 246789999999999999999999998885411
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
...+.|...|.++++.+|..++..|..+.. +....|+..+++.++.+|..++.+|..+.
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~----- 742 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVD----- 742 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-----
Confidence 123577788999999999999999998753 22346778899999999999999999862
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
..+.|..++.++++.|+..+..+|+.+... ....++.|..+++++++.+|..|+.+|.++...
T Consensus 743 -~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---- 805 (897)
T PRK13800 743 -DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---- 805 (897)
T ss_pred -CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----
Confidence 245688899999999999999998875321 122478899999999999999999999998641
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
...+..+...|.+.++.+|..|+.+|+.+.. + ..+++|+.+|++++..||..|+.+|+.+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA--D------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc--c------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2234678899999999999999999998853 2 2679999999999999999999999987
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 752 a~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
..++. ..+.|...+.+.++.+|..|.++|..
T Consensus 866 ~~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 PGDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 43333 56778889999999999999999853
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4e-11 Score=139.17 Aligned_cols=324 Identities=14% Similarity=0.134 Sum_probs=243.7
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhh
Q 000145 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 169 ~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~ 246 (2054)
+.|..+.++.++...+..+..+...++.+|..+.... ..++++-|+..++.+|... +.++.......+..-|..
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4455665555443222234567888888888887654 4567888999999999754 466777777888888888
Q ss_pred cCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHH----------HHHHhcCCHHHHHHhhcCCchh
Q 000145 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAK----------KAVVAADGVPVLIGAIVAPSKE 316 (2054)
Q Consensus 247 ~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~R----------k~I~eaggL~~LIeLL~s~s~e 316 (2054)
++.+|+.+++.++++.+...+.......+.+...++++.+..+ ++.| +.+...|++..|++
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~E-------- 248 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTE-------- 248 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHH--------
Confidence 8999999999999999998885322224556677888888774 3222 12222222222222
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHH
Q 000145 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILV 396 (2054)
Q Consensus 317 ~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv 396 (2054)
T Consensus 249 -------------------------------------------------------------------------------- 248 (461)
T KOG4199|consen 249 -------------------------------------------------------------------------------- 248 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHH----HHHHHHHHHHhcccCccchhhhhc
Q 000145 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADV----REYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 397 ~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ev----q~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
.++..-++.+-.....+|..++-+.++++.+.+.||+..+++++.+.+.+. -+.++..|+.++.+ ++++..|++
T Consensus 249 -al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~ 326 (461)
T KOG4199|consen 249 -ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVE 326 (461)
T ss_pred -HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 111111112445566678888888889999999999999999998855443 24556777788877 799999999
Q ss_pred cccHHHHHhhhc--CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCCh
Q 000145 473 REGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 473 ~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd 548 (2054)
.||.+.++.++. ++++.+...++.+++.|+..++++...+++.|+-...++.++.. ...+|+++++.++|+..++.
T Consensus 327 ~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 327 KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999764 56788899999999999998999999999999999999999866 56789999999999999888
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
+++..+. ..+++.|+...++..+.+...+-.+|..|..+
T Consensus 407 ~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 407 ENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred hccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 8888877 45689999999998888888888888888655
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2e-07 Score=123.68 Aligned_cols=743 Identities=14% Similarity=0.142 Sum_probs=401.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCC-CCCChh
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGG-LSDDHV 162 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~-~nk~~~ 162 (2054)
.+..|+.-|.+++.+++..|-+.+.++...+. ..+.|..++.. +|+++|.-|+-.+..+...- .+-+.+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 45667777788888999999999988754332 66888888887 79999999999998887520 001222
Q ss_pred HHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc-hhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG-YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~-r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
.+.. +-..|+..+.... .+.++....+++..++++.-. .|.. .++.|.+...++++..|+.|..+|+
T Consensus 76 ~~~s-----iks~lL~~~~~E~--~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 76 VQQS-----IKSSLLEIIQSET--EPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILS 143 (1075)
T ss_pred HHHH-----HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHH
Confidence 2333 3445666655443 356888888899888886522 3332 4677788888899999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhc---cCCChhHHHHHHHHHHHHhhccH---HHHHHHHhcCCHHHHHHhhcC---
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVG---QNNDISVRASAADALEALSSKSI---KAKKAVVAADGVPVLIGAIVA--- 312 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~---s~~d~~Vr~~Aa~aL~nLs~~s~---e~Rk~I~eaggL~~LIeLL~s--- 312 (2054)
.+....+.. ..+.++.+..++. .+.+..+|..+..++..++..++ ..++.+. .-+|.++..+..
T Consensus 144 s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 144 SLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQ 216 (1075)
T ss_pred hhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhh
Confidence 988433221 1233444444443 13444599999999998877543 3333332 344555554432
Q ss_pred -CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH-Hhhh-------hcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCC
Q 000145 313 -PSKECMQGQRGQALQGHATRALANIYGGMPALVV-YLGE-------LSQSPRLAAPVADIIGALAYALMVFEQKSGVDD 383 (2054)
Q Consensus 313 -~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~-~L~e-------lL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~ 383 (2054)
.+.+ .-..++.+|..+.+..+.++. .+.+ .-++......++...-.+....+-+........
T Consensus 217 ~~d~~---------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 217 DGDDD---------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred ccchH---------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 2211 123356666666655544321 1111 112222211111111111110000000000000
Q ss_pred cccchhhHHHHHHHHcCCCChh---------------hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHH
Q 000145 384 EPFDARQIEDILVMLLKPHDNK---------------LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADV 448 (2054)
Q Consensus 384 ~~~~~~gIe~~Lv~LLk~~~~e---------------~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ev 448 (2054)
..+-+ .+...+..++....++ .....+.+++-.++.+-. ....-.-.++.+-.++++.+...
T Consensus 288 ~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 288 ALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--GKQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred hhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--hhhehHHHHHHHHHHhcCCCHHH
Confidence 11111 1112233332221111 122233333333322110 00111123455677889999999
Q ss_pred HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC
Q 000145 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG 528 (2054)
Q Consensus 449 q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~ 528 (2054)
+..+..+|..++.+..+.-.... ...++..+..++++++.||..|+.+++.++..-...-..-.....++.|+..+.+.
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 99999999998876443322211 23566677888999999999999999999874333323333445667888888776
Q ss_pred -CHHHHHHHHHHHHHHhcCChhHHHHHHH--cCChH-HHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHH
Q 000145 529 -SQKAREVAAHVLWILCCHSEDIRACVES--AGAVP-AFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQL 597 (2054)
Q Consensus 529 -s~~Vre~AA~aL~nLa~~sd~~r~~I~e--~GaI~-aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~L 597 (2054)
++.++..|+.++-|++.+.+. ..+.- .+.+. .+..++.++.+.+|+.++.+++..+...+ ...+|.|
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLL 521 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 789999999999999764332 11110 23333 33346678899999999999999987754 2456777
Q ss_pred HHHhcCCC----cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-------cCCHHHHHHHHHHHHHHhh
Q 000145 598 LALLLGDS----PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-------SSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 598 v~LL~~~~----~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-------s~s~evre~Aa~ALanLas 666 (2054)
.+.|...+ ...+..+.+|++.+..-.....+.. ....+++++- +.++..+..-....+++|.
T Consensus 522 ~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~-------~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLP-------LAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhH-------hHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 77777544 2355566778777654322221111 1122222221 1133334444444444433
Q ss_pred cC-------------------------------------------------h---hhhh-----------------hhhh
Q 000145 667 MR-------------------------------------------------Q---DICG-----------------SLAT 677 (2054)
Q Consensus 667 ~~-------------------------------------------------~---e~r~-----------------~Iv~ 677 (2054)
.- . .++. ...+
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk 674 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELK 674 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhh
Confidence 10 0 0000 0011
Q ss_pred CCC-------HHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCc----ccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 678 DEI-------VNPCMR-LLTSNTQMVATQSARALGALSRPTKT----KTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 678 ~g~-------V~~Lv~-LL~dgs~~vr~~AA~AL~nLs~s~~~----~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
.+. ++..+. +.-.-+..+|+.|+.++..+..+... .+. ...-.-.++.+.++.-+.. .+.++....
T Consensus 675 ~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~-~l~~l~~~~~~~l~~~l~~E~e~~vl~~v 753 (1075)
T KOG2171|consen 675 EAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE-YLKQLWEAIRPALIKALEEEPETEVLSEI 753 (1075)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 111 121111 22235678898888888777651110 001 1111223466666666666 445565566
Q ss_pred HHHHHHhh-------CChHHHHHHHh---cCcHHHHH-------------------HHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 745 VAALANLL-------SDPDIAAEVLL---EDVVSALT-------------------RVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 745 l~AL~NLa-------~~~e~r~~Iv~---~g~I~~LV-------------------~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+..+++.- -+++..+.+.. ........ ..+.+.+..+...+...+..+...
T Consensus 754 l~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~ 833 (1075)
T KOG2171|consen 754 LESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKA 833 (1075)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 66665552 12222222111 00111111 111133444666777777777764
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCCh
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPP 875 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~ 875 (2054)
.. ..+... -.+..+.++.++.+.+.-. +.=|+..++-+.. .+.... + ......++.+..+..+..|
T Consensus 834 ~k--~~f~p~--f~~~~p~iv~~l~~~~~~~--r~~av~~~~d~ie---~~~~a~--~---~~~~~~~p~~~~~~~d~~p 899 (1075)
T KOG2171|consen 834 LK--GSFLPF--FENFLPLIVKLLKSKKTVA--RQWAVCIFDDLIE---GCGEAS--A---KYKERFLPLVLEALQDSDP 899 (1075)
T ss_pred cc--ccccHH--HHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHH---hccccc--c---hHHHHHHHHHHHHcCCCCH
Confidence 31 111111 1456777888886544322 5555555555442 111111 0 0123458889999999999
Q ss_pred hHHHHHHHHHHHhhccC
Q 000145 876 PLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 876 ~vq~~Ai~iL~~L~~~~ 892 (2054)
++|+.|++.+.-++...
T Consensus 900 EVRqaAsYGiGvlaq~~ 916 (1075)
T KOG2171|consen 900 EVRQAAAYGMGVLAQFG 916 (1075)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999877643
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.35 E-value=4.4e-10 Score=133.89 Aligned_cols=427 Identities=15% Similarity=0.109 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHhhcChhhhHHHh----hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 407 VQERVLEAMASLYGNIFLSQWVS----HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~----~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
++.....++.....++--++.+. ..+.++.|.+...+.+.++.....++|+|+|.++.++|..+.+.||-..+++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 66777777777765554444443 34567788888888889999999999999999999999999999996666665
Q ss_pred hc----CCCh---hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcC-ChhHHH
Q 000145 483 LG----LSSE---QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCH-SEDIRA 552 (2054)
Q Consensus 483 L~----s~d~---~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~-sd~~r~ 552 (2054)
++ .+++ +.-.-+...|.|-...+.+.+..+.+.|.++.|..++.-+ +...-+.......||..- .+....
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 54 2232 3444556677887777788899999999999999887654 444445555444554321 112233
Q ss_pred HHHHcCChHHHHHhhcc-CChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHH---
Q 000145 553 CVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIRAA-------DSATINQLLALLLG-DSPSSKAHVIKVLGHVL--- 620 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS-~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La--- 620 (2054)
...+......+++++.+ .+++..+..-..|...+.++ +.+....+..+++. .+...+.....-+...+
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHh
Confidence 33445556667777754 45677777777777776653 34556666666653 22221221111111111
Q ss_pred -hhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-----cCCHH
Q 000145 621 -TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-----SNTQM 694 (2054)
Q Consensus 621 -~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~-----dgs~~ 694 (2054)
......|..+....+...++-++..+.+.|.+....++-+++|++. +.+++..+++.+.+..|+.++. +|+.+
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 1122333444444445578999999999999999999999999998 8899999999999999999984 46778
Q ss_pred HHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH-HHHHHH-hcCcHHHHHH
Q 000145 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD-IAAEVL-LEDVVSALTR 772 (2054)
Q Consensus 695 vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e-~r~~Iv-~~g~I~~LV~ 772 (2054)
.+..+..||+|+.. |. .+|..+..+|++..++..++...+.+...-.+.|.-+....+ ...++. ....+..|++
T Consensus 377 ~qhA~lsALRnl~I--Pv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 377 RQHACLSALRNLMI--PV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred hHHHHHHHHHhccc--cC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 88899999999987 76 788899999999999999999999998888888887765444 444444 4567888999
Q ss_pred HHcCCCHH-HHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 773 VLAEGTSE-GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 773 LL~s~~~e-vr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.-.+.|-. +--..-+.|.-+..++.. .++.-.+.+.|+++.+|..+.... ..-+.+|+-+|..++.
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~-kdv~~tvpksg~ik~~Vsm~t~~h--i~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKY-KDVILTVPKSGGIKEKVSMFTKNH--INMQNEALVALLSTES 519 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHh-hhhHhhccccccHHHHHHHHHHhh--HHHhHHHHHHHHHHHH
Confidence 88877644 566667777777776422 345555666788999999997544 3347889988887764
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=7.4e-11 Score=161.87 Aligned_cols=276 Identities=22% Similarity=0.142 Sum_probs=221.9
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
..++.|++.|+++++.+|..|+..|..+.. .+.++.|+++|+++++.+|..|+.+|..+...
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------- 682 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------- 682 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------
Confidence 457889999999999999999999988764 34678899999999999999999999888431
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
....+.|...|++.++.+|..++.+|..+... ....+++.|.+.++.++..+..+|+.+
T Consensus 683 ---~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~----~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------- 741 (897)
T PRK13800 683 ---LPPAPALRDHLGSPDPVVRAAALDVLRALRAG----DAALFAAALGDPDHRVRIEAVRALVSV-------------- 741 (897)
T ss_pred ---cCchHHHHHHhcCCCHHHHHHHHHHHHhhccC----CHHHHHHHhcCCCHHHHHHHHHHHhcc--------------
Confidence 12346778888999999999999999887522 245788899999999999888888753
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+..+.|..++.++++++|..++.+|..+... ....++.|..++++.++.+|..|+.+|+++.. +.
T Consensus 742 ---~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~- 806 (897)
T PRK13800 742 ---DDVESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGC--PP- 806 (897)
T ss_pred ---cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cc-
Confidence 1235577889999999999999999998652 12347889999999999999999999999864 21
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
..+..++..|.+.++.||..|+.+|+.+. .+..++.|+.++.+.+..+|..|+++|.++.
T Consensus 807 ----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 ----------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred ----------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 13466888999999999999999999764 3456799999999999999999999999873
Q ss_pred hcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHH
Q 000145 794 KHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838 (2054)
Q Consensus 794 ~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~ 838 (2054)
.+ ......|...+++. +...+.+|..+|..
T Consensus 867 ~~-------------~~a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 867 GD-------------PAARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred CC-------------HHHHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 21 23557777888644 44568888888763
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.31 E-value=6.4e-09 Score=134.51 Aligned_cols=436 Identities=15% Similarity=0.139 Sum_probs=302.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHH
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~ 120 (2054)
....++.|..+ ..+..++..+..-....+.... .--+.+...|.+.+.+....++.+|..+-........
T Consensus 5 ~~~~l~~l~~~----~~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l 74 (503)
T PF10508_consen 5 INELLEELSSK----AERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSL 74 (503)
T ss_pred HHHHHHHHhcc----cchHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH
Confidence 45566666544 2244555555554333322222 2234477888888888888999999877554433322
Q ss_pred HHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 121 v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
..+..+.|...|.++++.+|..+++.|.++..+ +....+.+.+.++++.++..+..++ ..+...|..+|.+
T Consensus 75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPLIIQCLRDPD---LSVAKAAIKALKK 145 (503)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 346678888999999999999999999999963 3344677788999999999997654 5689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++..+.+. ..+...+++..|..++...++.+|..+..++.+++..+++....+.+.|.++.++..++. +|.-++..+.
T Consensus 146 l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnal 223 (503)
T PF10508_consen 146 LASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNAL 223 (503)
T ss_pred HhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHH
Confidence 99977655 567788889999999998888999999999999998888888888899999999999994 8889999999
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
+++..++. .+...+.+.+.|.++.|.+++.+...+. . +..+
T Consensus 224 ell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~--------------~~~~----------------------- 264 (503)
T PF10508_consen 224 ELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R--------------LSSL----------------------- 264 (503)
T ss_pred HHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c--------------ccch-----------------------
Confidence 99999999 5888899999999999999887654321 0 0000
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI 438 (2054)
+-. |.. ...++++.. ..+.. .-...+..+.
T Consensus 265 -------------------------~l~-g~~--------------------~f~g~la~~~~~~v~~--~~p~~~~~l~ 296 (503)
T PF10508_consen 265 -------------------------LLP-GRM--------------------KFFGNLARVSPQEVLE--LYPAFLERLF 296 (503)
T ss_pred -------------------------hhh-hHH--------------------HHHHHHHhcChHHHHH--HHHHHHHHHH
Confidence 000 000 011111110 00000 0012345566
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhh-hccc-c----HHHHHhhhcCCChhhhHHHHHHHHHHhhhccc---h-
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAI-GKRE-G----IQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---S- 508 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~I-ve~g-g----Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e---~- 508 (2054)
.++.+.+...+..|..+|+.++.. .+.+..+ ...+ . +..+-...+++..++|..++.+|.++-....+ +
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND 375 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence 788889999999999999999876 4455555 3322 2 33344455677788999999999999432221 1
Q ss_pred ----hhHHH---hhCCCc-hHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh---hHHHH
Q 000145 509 ----KWAIT---AAGGIP-PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP---KGQDA 577 (2054)
Q Consensus 509 ----r~~I~---~aGaIp-~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~---evq~~ 577 (2054)
..... ..+... .+..+++.+-+++|..+.+.|..|+.+.-..+.+....|.++-|+.--...++ +.++.
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ 455 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYD 455 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHH
Confidence 11112 223333 56677888889999999999999998776677776667766666543333333 45666
Q ss_pred HHHHHHHH
Q 000145 578 SAMALTKL 585 (2054)
Q Consensus 578 AA~AL~nL 585 (2054)
.+.+|.+.
T Consensus 456 ii~~l~~~ 463 (503)
T PF10508_consen 456 IIKALAKS 463 (503)
T ss_pred HHHHHHhc
Confidence 66666544
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=7.8e-09 Score=133.71 Aligned_cols=390 Identities=18% Similarity=0.169 Sum_probs=280.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
+.+...+...+.+.+ ..++..|..+......... ..+..+.+...+.+.++.++..++..+.++..++......+.+
T Consensus 41 ~~lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 335566666555433 4555666666543332222 3456688899999999999999999999998876666677778
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+.++.++.++.+++..+...|+.+|.+++.+ +.....+...+.+..|..++..++..+|..+..++.+++..+++...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999984 55556677888899999999888999999999999999999999999
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcch---HH---HHHHHHHHH
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSS---KA---HVIKVLGHV 619 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~~~~~V---~~---~a~~AL~~L 619 (2054)
.+.+.|.++.++..++++|.-+|.++...|..++... +.++++.|..++.+...+- .. ......+++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 9999999999999999999999999999999998753 3578899999987543322 11 112344444
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh-hhC-CC----HHHHHHHhccCCH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL-ATD-EI----VNPCMRLLTSNTQ 693 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I-v~~-g~----V~~Lv~LL~dgs~ 693 (2054)
+.. .+..+... -...+..|.+++.+.|...+..|..+++.+++ ..+.+..+ ... +. +..+....+.++.
T Consensus 277 a~~--~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 277 ARV--SPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred Hhc--ChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 433 22222211 13456677778888999999999999999998 66666666 443 23 4555555667888
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhH-----H---HHhcCChh-hHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH-h
Q 000145 694 MVATQSARALGALSRPTKTKTTNKM-----S---YIAEGDVK-PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL-L 763 (2054)
Q Consensus 694 ~vr~~AA~AL~nLs~s~~~~d~~r~-----~---I~~~gaV~-~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv-~ 763 (2054)
++|..+..++.++.......+..+. . ....+... .+..+++.+=+++|..+...|..++.++-....+. .
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~ 431 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSS 431 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhC
Confidence 9999999999999652222011111 1 11223333 56677776669999999999999999886666655 4
Q ss_pred cCcHHHHHHHHcCCCHHH---HHHHHHHHHH
Q 000145 764 EDVVSALTRVLAEGTSEG---KKNASRALHQ 791 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~~~ev---r~~Aa~AL~n 791 (2054)
+|.++.+++--.+.+.+. |...+.+|.+
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 555666554444445444 4444444443
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=9.4e-08 Score=126.63 Aligned_cols=504 Identities=17% Similarity=0.161 Sum_probs=317.0
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2054)
.+..|+.-|.+++.+++..|-.++.++... ...++.|..++....++.+|..|+-.++.+..+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~----------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~------- 67 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKT----------EPLLPALAHILATSADPQVRQLAAVLLRKLLTK------- 67 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcc----------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-------
Confidence 456677777778888899999998877632 227888888888888999999998888887774
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~ 376 (2054)
+. ..=+.+ .|.
T Consensus 68 ~w------------~~l~~e---------~~~------------------------------------------------ 78 (1075)
T KOG2171|consen 68 HW------------SRLSAE---------VQQ------------------------------------------------ 78 (1075)
T ss_pred Hh------------hcCCHH---------HHH------------------------------------------------
Confidence 00 000000 000
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHH
Q 000145 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2054)
Q Consensus 377 ~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL 456 (2054)
.+...|...+.+...+.+|...+..++.++++.--.+ -.+.++.|++-..+.++..|+.|...|
T Consensus 79 -------------siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~---WPell~~L~q~~~S~~~~~rE~al~il 142 (1075)
T KOG2171|consen 79 -------------SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK---WPELLQFLFQSTKSPNPSLRESALLIL 142 (1075)
T ss_pred -------------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 0000111111111122366666666666654431111 235678888889999999999999988
Q ss_pred HHhcccCccc-hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh-hCCCchHhhhh----hcCCH
Q 000145 457 TKLCRREVGI-WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLL----EAGSQ 530 (2054)
Q Consensus 457 ~~Ls~~s~e~-r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~-aGaIp~LV~LL----~s~s~ 530 (2054)
..+...-... +..+ ....+.+.+.+.+++..+|..++.++.......+.++..... ...+|.++..+ ..++.
T Consensus 143 ~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 143 SSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred HhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 8876531111 1111 123455666777777779999999999988765533333332 23566666655 45567
Q ss_pred HHHHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccC--ChhHHHHHHHHHHHHHHhhc----------hhhHHHH
Q 000145 531 KAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSG--GPKGQDASAMALTKLIRAAD----------SATINQL 597 (2054)
Q Consensus 531 ~Vre~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~--~~evq~~AA~AL~nLs~~~e----------~~~Ip~L 597 (2054)
+.-..+...|-.|...... .+..+. ..+.....+.++. ++.+|..|...|..++...- ...++.+
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHH
Confidence 6677777888877654332 233332 2344444555553 57899999999988876621 2345666
Q ss_pred HHHhcCCC----------------cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHH
Q 000145 598 LALLLGDS----------------PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2054)
Q Consensus 598 v~LL~~~~----------------~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~AL 661 (2054)
++++.+.. ......+.+++-.++...+.+.. ..-..+.+-.++.+.++.-|..+..+|
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v------~p~~~~~l~~~l~S~~w~~R~AaL~Al 372 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV------LPPLFEALEAMLQSTEWKERHAALLAL 372 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66654211 11345567777777765544322 122466777788999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHH
Q 000145 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDA 740 (2054)
Q Consensus 662 anLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~V 740 (2054)
+.++.+..+.-.. .=..+++..+..|+|.++.||-.|+.|++.++....+ ... .-...-+.+.|+..+.+ .++.|
T Consensus 373 s~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p--~iq-k~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 373 SVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP--EIQ-KKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH--HHH-HHHHHhccHHHHHHhcccCchHH
Confidence 9998875554433 2246788888999999999999999999999984443 222 22333466678888877 56789
Q ss_pred HHHHHHHHHHhhCC-hHHHHHHHhcCcHH-HHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHh
Q 000145 741 AETAVAALANLLSD-PDIAAEVLLEDVVS-ALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDS 818 (2054)
Q Consensus 741 re~Al~AL~NLa~~-~e~r~~Iv~~g~I~-~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~L 818 (2054)
+..|+.+|-|++.. +...-.=.-.+.+. .+..++.++.+.+|+.++.+++..+... ++.+.... ...++.|...
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA--~~~F~pY~--d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA--QEKFIPYF--DRLMPLLKNF 524 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--hhhhHhHH--HHHHHHHHHH
Confidence 99999999999752 21110001123444 4445677889999999999999988653 22333222 3467778888
Q ss_pred hccCC--CCchhHHHHHHHHHHHh
Q 000145 819 LNAMD--MNGTDVADALEVVALLA 840 (2054)
Q Consensus 819 L~sg~--~~~~~~~~AL~ALa~La 840 (2054)
+..++ +....+....+-++.++
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHH
Confidence 87665 33334444445555444
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.22 E-value=1.4e-07 Score=122.81 Aligned_cols=503 Identities=20% Similarity=0.189 Sum_probs=326.5
Q ss_pred HHHHHccC--CHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 89 FISILRSG--TPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 89 LV~LLks~--s~evr~~AA~-vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
+.+.+.+. +..-+..+.. ++.....+.+.. .+.+.+++++.++|.+.+.-+--++..+... ++. .-
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~-~~ 77 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPE-LL 77 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHH-HH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chh-HH
Confidence 44445444 5544544443 344444444332 6789999999999999999999998888862 332 11
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 166 ~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
.+ ++..+.+-|.+++ +.++..|+++|.+++. ..+.+. .++.+.+++.++++.+|..|+.++.++..
T Consensus 78 ~l----~~n~l~kdl~~~n---~~~~~lAL~~l~~i~~------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 78 IL----IINSLQKDLNSPN---PYIRGLALRTLSNIRT------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIYR 143 (526)
T ss_dssp HH----HHHHHHHHHCSSS---HHHHHHHHHHHHHH-S------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHhhcCCC---HHHHHHHHhhhhhhcc------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 22 5677777777654 6789999999999985 222222 47788899999999999999999999997
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~ 325 (2054)
.+++.. ... .++.+..++. +.+..++..|..++..+ ..++.... ..++.++.
T Consensus 144 ~~p~~~---~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~----------------- 195 (526)
T PF01602_consen 144 KDPDLV---EDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIR----------------- 195 (526)
T ss_dssp HCHCCH---HGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHH-----------------
T ss_pred cCHHHH---HHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHH-----------------
Confidence 655422 122 6888889886 57788998888888887 21111110 00111111
Q ss_pred hhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000145 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2054)
Q Consensus 326 lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e 405 (2054)
.|..++...++
T Consensus 196 --------------------------------------------------------------------~L~~~l~~~~~- 206 (526)
T PF01602_consen 196 --------------------------------------------------------------------ILCQLLSDPDP- 206 (526)
T ss_dssp --------------------------------------------------------------------HHHHHHTCCSH-
T ss_pred --------------------------------------------------------------------Hhhhcccccch-
Confidence 11111111222
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
..+...+..+..++....... .....++.+..++.+.++.+...++.++..+..... .-...++.|.+++.+
T Consensus 207 ~~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s 278 (526)
T PF01602_consen 207 WLQIKILRLLRRYAPMEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSS 278 (526)
T ss_dssp HHHHHHHHHHTTSTSSSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccCChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhc
Confidence 133334344443322111000 003456777778888888899999999888776532 234678899999999
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV 564 (2054)
+++.+|..++..|..++... ...+. .....+..+. +.+..+|..+...|..++. +.+-.. .++.|.
T Consensus 279 ~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~ 345 (526)
T PF01602_consen 279 SDPNVRYIALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELL 345 (526)
T ss_dssp SSHHHHHHHHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHH
T ss_pred ccchhehhHHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHH
Confidence 99999999999999998753 12222 2222334455 7799999999999999985 222222 467788
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchH
Q 000145 565 WLL-KSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2054)
Q Consensus 565 ~LL-kS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~ 640 (2054)
..+ ...+++.+..++..+..++.... ...++.+++++....+.+...+...+..+....+. .. ...+.
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~------~~~l~ 417 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LR------EKILK 417 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--TH------HHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hh------HHHHH
Confidence 888 44588899999999999987632 34678899999988788877777777777543221 11 12478
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 641 SLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 641 ~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
.|+.++.+ .+++.+..++|+++..+...++ .. .-...+..+.+.....++.+|.....++.++....+.. ..+
T Consensus 418 ~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~-~~~-- 491 (526)
T PF01602_consen 418 KLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN-EVQ-- 491 (526)
T ss_dssp HHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-THH--
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-hhH--
Confidence 88888876 5788999999999998764322 00 11234455566666778889999999999998743320 111
Q ss_pred HHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHh
Q 000145 720 YIAEGDVKPLIKLAK--TSSIDAAETAVAALANL 751 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~--s~d~~Vre~Al~AL~NL 751 (2054)
......+..+.. +.+.++|..|...+.-|
T Consensus 492 ---~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 ---NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ---HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 125566777777 78999999998887654
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.21 E-value=1.8e-08 Score=130.95 Aligned_cols=472 Identities=19% Similarity=0.206 Sum_probs=322.9
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 216 GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 216 GGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
-|...+++++.+.+...+.-+.-++..+...+++. -.-++..+.+=+. ++++.++..|..++.++.. ++..+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~-----~~l~~n~l~kdl~-~~n~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL-----LILIINSLQKDLN-SPNPYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH-----HHHHHHHHHHHHC-SSSHHHHHHHHHHHHHH-S--HHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHHHhhc-CCCHHHHHHHHhhhhhhcc--cchhh
Confidence 37888999999888888888877777776544331 1114555566666 4677899999999999875 44444
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
.+ ++.+.+++.++++. +|..|+.++.+++...+
T Consensus 114 ~l-----~~~v~~ll~~~~~~---------VRk~A~~~l~~i~~~~p--------------------------------- 146 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPY---------VRKKAALALLKIYRKDP--------------------------------- 146 (526)
T ss_dssp HH-----HHHHHHHHHSSSHH---------HHHHHHHHHHHHHHHCH---------------------------------
T ss_pred HH-----HHHHHHHhcCCchH---------HHHHHHHHHHHHhccCH---------------------------------
Confidence 43 46777888877754 66777777777653111
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHH
Q 000145 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~A 455 (2054)
+.+... ..+.+..++.+.+.. ++..|+.++..+-.++.... -.-...++.|..++...++-.|......
T Consensus 147 --------~~~~~~-~~~~l~~lL~d~~~~-V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 147 --------DLVEDE-LIPKLKQLLSDKDPS-VVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp --------CCHHGG-HHHHHHHHTTHSSHH-HHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred --------HHHHHH-HHHHHhhhccCCcch-hHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 112222 457788888777654 88888888888812222111 1112344556666688899999999999
Q ss_pred HHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHH
Q 000145 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535 (2054)
Q Consensus 456 L~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~ 535 (2054)
+..++...+..... ...++.+..++++.++.+...++.++..+... .. .-..++++|.++|.++++++|..
T Consensus 216 l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~ 286 (526)
T PF01602_consen 216 LRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYI 286 (526)
T ss_dssp HTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehh
Confidence 99888764433311 35678888888988899999999999988763 22 23357889999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh-cCCCcchHHHH
Q 000145 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD-SATINQLLALL-LGDSPSSKAHV 612 (2054)
Q Consensus 536 AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL-~~~~~~V~~~a 612 (2054)
+...|..++... ...+. .....+..++ ++++.++..+...|.+++.... ..+++.|.+.+ ..++++++..+
T Consensus 287 ~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 287 ALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred HHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhH
Confidence 999999998754 22221 2333344444 8899999999999999987644 45778899999 45577889999
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-C
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-N 691 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-g 691 (2054)
..+++.++...... ..-.++.+++++..+++.+...+...+.++...+++.+.. ++..+++.+.+ .
T Consensus 361 i~~I~~la~~~~~~--------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~ 427 (526)
T PF01602_consen 361 IKAIGDLAEKFPPD--------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDIS 427 (526)
T ss_dssp HHHHHHHHHHHGSS--------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSS
T ss_pred HHHHHHHHhccCch--------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhh
Confidence 99998887432211 1125889999999888888888888899988766655544 37888888876 6
Q ss_pred CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Ch--HHHHHHHhcCcHH
Q 000145 692 TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP--DIAAEVLLEDVVS 768 (2054)
Q Consensus 692 s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~--e~r~~Iv~~g~I~ 768 (2054)
++..+..++|.++..+...+ . .. .....++.+.+.....++.++...+.++.-+.. +| +... ..++
T Consensus 428 ~~~~~~~~~wilGEy~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~-----~i~~ 496 (526)
T PF01602_consen 428 SPEALAAAIWILGEYGELIE---N--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN-----EILQ 496 (526)
T ss_dssp SHHHHHHHHHHHHHHCHHHT---T--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH-----HHHH
T ss_pred HHHHHHHHHhhhcccCCccc---c--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH-----HHHH
Confidence 77889999999999875111 1 00 112245556666666778899999999988864 33 2222 2445
Q ss_pred HHHHHHc--CCCHHHHHHHHHHHHHh
Q 000145 769 ALTRVLA--EGTSEGKKNASRALHQL 792 (2054)
Q Consensus 769 ~LV~LL~--s~~~evr~~Aa~AL~nL 792 (2054)
.+..+.. +.++++|+.|.+.+.=|
T Consensus 497 ~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 5666667 77999999998877544
No 29
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.18 E-value=2.4e-08 Score=125.50 Aligned_cols=497 Identities=15% Similarity=0.057 Sum_probs=296.4
Q ss_pred HccCCHHHHHHHHHHHHHhc-cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 000145 93 LRSGTPLAKVNVAATLSVLC-KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVT 169 (2054)
Q Consensus 93 Lks~s~evr~~AA~vL~~Ls-~~ee~r~~v~~~GaIp~LV~LL~se--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~ 169 (2054)
+-+.+++....+..-..++. ...+.+..+...|+++.|+.++..+ .++.....+..+..+..+ ++.....+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~----eqd~v~svL~ 93 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLG----EQDKVDSVLR 93 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhh----ccchHHHHHH
Confidence 34456666666666676654 4567777888999999999999874 667777788888888873 5556788899
Q ss_pred cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch--hHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhc
Q 000145 170 EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY--WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF 247 (2054)
Q Consensus 170 aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r--~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~ 247 (2054)
.+..+.|+++|.++. ...+.+..+++++++-...... .....+...+..+..++.-+...+...-+.....++ ..
T Consensus 94 ~~~ll~Ll~LLs~sD--~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~ 170 (678)
T KOG1293|consen 94 IIELLKLLQLLSESD--SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-ST 170 (678)
T ss_pred HhhHHHHHHHhcCcc--hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-cc
Confidence 999999999998664 2357888999999998876322 122222233444444444244445555555555555 44
Q ss_pred CCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHH---HHhhccHHHHHHHHh---cCCHH---HHHHhhcCCchhhh
Q 000145 248 GDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE---ALSSKSIKAKKAVVA---ADGVP---VLIGAIVAPSKECM 318 (2054)
Q Consensus 248 ~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~---nLs~~s~e~Rk~I~e---aggL~---~LIeLL~s~s~e~~ 318 (2054)
++++....+.|..+.+.-++.. .....|..|...+. .+..+++.....++. .+|+. .+..+..++...
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s-- 247 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS-- 247 (678)
T ss_pred chhhheeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc--
Confidence 4666667788888887776663 45578888888887 666654444333321 22222 233333333211
Q ss_pred hhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH-HHHH
Q 000145 319 QGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED-ILVM 397 (2054)
Q Consensus 319 q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~-~Lv~ 397 (2054)
.+..+..||-+.+. .. .+.++-.....+.+.+-+. ....
T Consensus 248 -------~~l~sl~cl~~~~~-------------------------------~s--~~~d~l~~~~~~~dmgd~~i~q~~ 287 (678)
T KOG1293|consen 248 -------ERLRSLECLVPYLR-------------------------------KS--FNYDPLPWWFIFFDMGDSLIVQYN 287 (678)
T ss_pred -------HHHHHHHHHHHHHh-------------------------------cc--ccccccccceeeccCchHHHHHHh
Confidence 12223333322221 10 0001111122232222110 0011
Q ss_pred HcCC-CChhhHHHHHHHHHHHh-hc-ChhhhHHHhhcchHHHHHHHhc------cCCHHHHHHHHHH---HHHhccc-Cc
Q 000145 398 LLKP-HDNKLVQERVLEAMASL-YG-NIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILS---LTKLCRR-EV 464 (2054)
Q Consensus 398 LLk~-~~~e~Vq~~Aa~AL~~L-~~-n~~~~~~L~~~g~I~~LI~LL~------ssd~evq~~Aa~A---L~~Ls~~-s~ 464 (2054)
.+.. .++...+..+...+..+ ++ -+.++....+....+..++++. .+.++.+.-++.- ...++.. ..
T Consensus 288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 1111 11111222222222221 21 1233333344445555555542 2333333332211 1122221 12
Q ss_pred cchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 465 e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
..++.+-+.-....+..+....|......|+.++.+.++....-|....+..+..+|+++|..++..++..+.++++|+.
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 23333433333344444555667778888888888888754555555667789999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~ 624 (2054)
.+-...+..+.+.|+|..+..++.+.++.++..+.|+|.++....+. ..+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---------------~~k~~------------- 499 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---------------EEKFQ------------- 499 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---------------HHHHH-------------
Confidence 98888899999999999999999999999999999999999866321 11111
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
..++. ....++.+.+++++.++|.+...|+|+..+..+...-+
T Consensus 500 ---~~~ki-----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 500 ---LLAKI-----PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred ---HHHHh-----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 11111 35567788899999999999999999987544444333
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-08 Score=123.02 Aligned_cols=404 Identities=14% Similarity=0.145 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch
Q 000145 38 MSTVAKFLEQLHANMS-SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED 116 (2054)
Q Consensus 38 ~~~V~qlIe~L~~sss-s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee 116 (2054)
.+.+.++.++++..-. ..+....|+..|.+++..-..--++.. ...|..||+.|...+.+........|..|+...+
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrr--kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e 336 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRR--KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE 336 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc
Confidence 4555556666654211 112234566667777766533333333 4679999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 117 ~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
++..+.+.|.|..|+++.-.++++.+......|.|+|.. ...+.+++..|.+|.|..++.+.++-+ -|+.
T Consensus 337 NK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-----~glr~KMv~~GllP~l~~ll~~d~~~~-----iA~~ 406 (791)
T KOG1222|consen 337 NKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-----SGLRPKMVNGGLLPHLASLLDSDTKHG-----IALN 406 (791)
T ss_pred chHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-----ccccHHHhhccchHHHHHHhCCcccch-----hhhh
Confidence 999999999999999999999999999999999999974 345789999999999999998776332 4677
Q ss_pred HHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHH
Q 000145 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVR 276 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr 276 (2054)
.|..++.+++.+ ..+....+|+ .+...+-.+.+.++-
T Consensus 407 ~lYh~S~dD~~K-~MfayTdci~------------------------------------------~lmk~v~~~~~~~vd 443 (791)
T KOG1222|consen 407 MLYHLSCDDDAK-AMFAYTDCIK------------------------------------------LLMKDVLSGTGSEVD 443 (791)
T ss_pred hhhhhccCcHHH-HHHHHHHHHH------------------------------------------HHHHHHHhcCCceec
Confidence 888887755332 1122222333 333332222232222
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchh-HHH---Hhhhh
Q 000145 277 ASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPA-LVV---YLGEL 351 (2054)
Q Consensus 277 ~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~-lI~---~L~el 351 (2054)
......-.|++. +..+.+.+.+..|+..|.+.-.. .+.-.| -.++.++.--|.... .|. -|...
T Consensus 444 l~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLm----------K~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 444 LALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLM----------KVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred HHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHH----------HHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 222222234444 24444555555666666553322 111111 112222211121111 122 23333
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-ChhhHHHHHHHHHHHhhcChhhhHHHhh
Q 000145 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-DNKLVQERVLEAMASLYGNIFLSQWVSH 430 (2054)
Q Consensus 352 L~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~-~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~ 430 (2054)
.+..++..-..+.+|.++..-. + + ..-..++.....+|++...+.+. +.++.......++|.++++.++...+..
T Consensus 513 ~~nd~~E~F~~EClGtlanL~v--~-d-ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~ 588 (791)
T KOG1222|consen 513 AKNDNSESFGLECLGTLANLKV--T-D-LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAP 588 (791)
T ss_pred hhcCchHHHHHHHHHHHhhccc--C-C-CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCc
Confidence 4444444455556666554211 0 0 11123445566779999888775 3445778888899999999998888999
Q ss_pred cchHHHHHHHhcc--CCHHHHHHHHHHHHHhcccCccchhhhhcc-ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc
Q 000145 431 AEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEAIGKR-EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 431 ~g~I~~LI~LL~s--sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~-ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
.+.++.++.+++. .+.+........+..+-.+ ...+..+++. ..-..++.++...+.++|+.+-.+|-.++.++.+
T Consensus 589 a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999976 4566666667777777776 3444444443 4445699999999999999999999989886555
Q ss_pred hhhHH
Q 000145 508 SKWAI 512 (2054)
Q Consensus 508 ~r~~I 512 (2054)
....|
T Consensus 668 WAKrI 672 (791)
T KOG1222|consen 668 WAKRI 672 (791)
T ss_pred HHHHH
Confidence 43333
No 31
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.14 E-value=9.2e-06 Score=105.15 Aligned_cols=771 Identities=15% Similarity=0.126 Sum_probs=399.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSL 133 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~L 133 (2054)
...|.+++.+|.+++.... +... .+.++.|++-|... ......--...|..+|.....|---.-...+|.+.+.
T Consensus 188 ~aVrKkai~~l~~la~~~~--~~ly---~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCN--RDLY---VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY 262 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHH---HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH
Confidence 3457778888888865431 1122 13455566555443 2333333445555555433332221223567888888
Q ss_pred h---ccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC-C-------------------------
Q 000145 134 L---KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK-N------------------------- 184 (2054)
Q Consensus 134 L---~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~-s------------------------- 184 (2054)
. ..++.+.|+.+.++|..+-..+. .+ .-.+ -..++..+++.+..+ +
T Consensus 263 ~~~~e~~dDELrE~~lQale~fl~rcp--~e--i~p~-~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 263 CNKIEEDDDELREYCLQALESFLRRCP--KE--ILPH-VPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred hcccccCcHHHHHHHHHHHHHHHHhCh--hh--hccc-chHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 8 44688999999999999886421 11 1000 011333333433321 0
Q ss_pred -----CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchh-----
Q 000145 185 -----KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTV----- 254 (2054)
Q Consensus 185 -----~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i----- 254 (2054)
.....+++.|+.++..+-.........+.+.-| |.++..++...++++.....+.-.+....+......
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~-p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~ 416 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLG-PALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDA 416 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhC-HHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchh
Confidence 001357888888888877765443334444333 566677777667777777776666653211111111
Q ss_pred cccch-----------HHHHHHHhc---cCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 255 IDSGA-----------VKALVQLVG---QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 255 ~~sGa-----------L~~LL~LL~---s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+.|+ ++.+++.++ +......+..+...|..+....+..-.+ .....++.++..+.+.+..-
T Consensus 417 ~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSsss--- 492 (1233)
T KOG1824|consen 417 MEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSSSS--- 492 (1233)
T ss_pred hhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccchH---
Confidence 11122 233444442 1233344555555555554422211111 11234555666665544221
Q ss_pred hhhhhhhhHHHHHHHHHhcCch-hH----HHHhhhhcC---CCCchhhHHHHHHHHHHHHHHhhcCCCCCC-----cccc
Q 000145 321 QRGQALQGHATRALANIYGGMP-AL----VVYLGELSQ---SPRLAAPVADIIGALAYALMVFEQKSGVDD-----EPFD 387 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis-~l----I~~L~elL~---s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~-----~~~~ 387 (2054)
+ ...-++..+.++-..-+ +. ++.|...+- ..+-.+-.+++|..++....++. +.... ..+.
T Consensus 493 ---~-~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir--pl~~~~~~d~~~~v 566 (1233)
T KOG1824|consen 493 ---N-LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR--PLQPPSSFDASPYV 566 (1233)
T ss_pred ---H-HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc--ccCCCccCCCChhH
Confidence 1 22223333333221111 11 111111111 01123344555555544433332 21111 1111
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc-cCCHHHHHHHHHHHHHhcccCccc
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREVGI 466 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls~~s~e~ 466 (2054)
..-..-.+..+.....+.++|++++.+++.+..+.. .+...+....|.-++. .+++-++..|+.+++.++...-..
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccee
Confidence 111212223333334455699999999998743321 1111222233333332 355778888999999887763322
Q ss_pred h-hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccch-hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 467 W-EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS-KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 467 r-~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~-r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
- ..+ -..+++.+.+.++......+.....++-.|..+..+. .....+. .+..+-.++...+..+-+.|...|..+.
T Consensus 644 ~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 644 DLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred ehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 222 2356788888888777777777777777776533221 1111111 2223334455667788888999998887
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh----hchhh-HHHHHHHhcCCCcc-----hHHH---
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA----ADSAT-INQLLALLLGDSPS-----SKAH--- 611 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~----~e~~~-Ip~Lv~LL~~~~~~-----V~~~--- 611 (2054)
......- .-.....++.++.+++|+ -++-.+..++.++... ...+. +..+..++...-.+ ...+
T Consensus 722 ~~~ps~l-~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~ 798 (1233)
T KOG1824|consen 722 IIQPSSL-LKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYY 798 (1233)
T ss_pred hcccHHH-HHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHH
Confidence 6443322 223466788889999875 4455566666655543 11111 45566666543222 2222
Q ss_pred -HHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 612 -VIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 612 -a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
.+.|.+.|....+.+ .......|+.=+.+ .+..+|-.|.-.|..+..... .....+.-..+++.+
T Consensus 799 siA~cvA~Lt~~~~~~--------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf 866 (1233)
T KOG1824|consen 799 SIAKCVAALTCACPQK--------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAF 866 (1233)
T ss_pred HHHHHHHHHHHhcccc--------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHc
Confidence 344444443322211 01123344443333 356777777777777765311 112234455777888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh-C-ChHHHHHHHhcCc
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL-S-DPDIAAEVLLEDV 766 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa-~-~~e~r~~Iv~~g~ 766 (2054)
.+.+++++..|+.||++++.++-+ ..+|-++....+.. .-+.--+..|-... + ..+ .....
T Consensus 867 ~sp~edvksAAs~ALGsl~vgnl~-----------~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd-----~~~~~ 929 (1233)
T KOG1824|consen 867 NSPSEDVKSAASYALGSLAVGNLP-----------KYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVD-----GLKPY 929 (1233)
T ss_pred CCChHHHHHHHHHHhhhhhcCchH-----------hHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccc-----hhhhh
Confidence 999999999999999999874332 25566666665532 22222222222111 1 011 01123
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 767 VSALTRVLA----EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 767 I~~LV~LL~----s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
++.+..+|. ...+-.|.-.++||+.|+...| ...+++|-..++++.... +.-++.+..+.-..
T Consensus 930 v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-----------esLlpkL~~~~~S~a~~~--rs~vvsavKfsisd 996 (1233)
T KOG1824|consen 930 VEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-----------ESLLPKLKLLLRSEASNT--RSSVVSAVKFSISD 996 (1233)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-----------HHHHHHHHHHhcCCCcch--hhhhhheeeeeecC
Confidence 444554443 2234558888999999998654 457888988888766544 44444443333221
Q ss_pred ccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHh
Q 000145 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIM 915 (2054)
Q Consensus 843 ~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il 915 (2054)
.+..++ .-..+-++.+..++.+++..+++-|+.++.....+.| .+|..|...++
T Consensus 997 --~p~~id------~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-----------slIrDllpeLL 1050 (1233)
T KOG1824|consen 997 --QPQPID------PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-----------SLIRDLLPELL 1050 (1233)
T ss_pred --CCCccC------HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-----------hHHHHHHHHHH
Confidence 223332 1112346788899999999999999999998877766 45555555554
No 32
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.08 E-value=1.6e-07 Score=118.16 Aligned_cols=479 Identities=14% Similarity=0.091 Sum_probs=286.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-ChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-DISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~-d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..+++....+..-..|+..++++....+.+.|+++.++.+++..+ ..+.+...+.++..+..+..+....+.+.+.++.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 345566666777778888788888888999999999999997322 3345545666677777766777788999999999
Q ss_pred HHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcc
Q 000145 306 LIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385 (2054)
Q Consensus 306 LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~ 385 (2054)
|..++.++++.. ..+.+++++.++....+.. .. .-.
T Consensus 100 Ll~LLs~sD~~~--------~le~~l~~lR~Ifet~~~q-------------~~-----------------------~~s 135 (678)
T KOG1293|consen 100 LLQLLSESDSLN--------VLEKTLRCLRTIFETSKYQ-------------DK-----------------------KMS 135 (678)
T ss_pred HHHHhcCcchHh--------HHHHHHHHHHHHHhccccc-------------cc-----------------------chh
Confidence 999998877332 4466777777765321110 00 000
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHH---Hhccc
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT---KLCRR 462 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~---~Ls~~ 462 (2054)
.....+++.+..+.... .+.+...-+.-...+++-.+.+..+.+.+..+.+.-++...+...|..+...++ ++.++
T Consensus 136 ~~~~sIi~~~s~l~s~~-lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~N 214 (678)
T KOG1293|consen 136 LHLKSIIVKFSLLYSIE-LKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRN 214 (678)
T ss_pred hhHHHHHHHHHHHHhhh-hhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeec
Confidence 01112222222222211 111111111111222233333334455566666655566556777777778887 66666
Q ss_pred Cccchhhh----hccccHH--HHHhhhcCCChhhhHHHHHHHHHHhhhccchh----hHHHhhCCCchHhh-----hhhc
Q 000145 463 EVGIWEAI----GKREGIQ--LLISLLGLSSEQHQEYAVQLIAILTEQVDDSK----WAITAAGGIPPLVQ-----LLEA 527 (2054)
Q Consensus 463 s~e~r~~I----ve~ggIp--~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r----~~I~~aGaIp~LV~-----LL~s 527 (2054)
++...... ...|..+ ...+++++++...+..++.++.++...+.... +.+.-..+-..++. +...
T Consensus 215 n~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~ 294 (678)
T KOG1293|consen 215 NPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMND 294 (678)
T ss_pred CchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecC
Confidence 55544332 2323333 45668888888888889999888876542221 22222222222222 1222
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc------cCChhHHHHHHHHHHHH---HHhhc--------
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKL---IRAAD-------- 590 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk------S~~~evq~~AA~AL~nL---s~~~e-------- 590 (2054)
+-......++...+.++.-...++....+...++.+.++++ .+.++.+.-++.-..-+ +...+
T Consensus 295 P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l 374 (678)
T KOG1293|consen 295 PGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEIL 374 (678)
T ss_pred CceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHH
Confidence 22222233334444444222233333334455555555544 23444443333221111 11110
Q ss_pred -hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 591 -SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 591 -~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
..+...+..+....+......++.|+..+++. .+..+.+....+++.+||+++..++..++..+.+++.|+.-...
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srs---V~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKSFSRS---VSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHHHHHH---HHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 11122222223334444555556666655443 33455557788899999999999999999999999999988778
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000145 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~ 749 (2054)
..+..+.+.|+|+.+..++.+.++.+|..+.|+|+++.....+ ..+......-...-+..+.++++..|++.+...|.
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de--~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE--EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH--HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999873333 33333344434455778889999999999999999
Q ss_pred HhhCCh
Q 000145 750 NLLSDP 755 (2054)
Q Consensus 750 NLa~~~ 755 (2054)
||.++.
T Consensus 530 Nl~c~~ 535 (678)
T KOG1293|consen 530 NLTCNS 535 (678)
T ss_pred HhhcCc
Confidence 998864
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5.4e-07 Score=112.67 Aligned_cols=656 Identities=15% Similarity=0.129 Sum_probs=347.9
Q ss_pred CcHHHHHHHHcc---CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCC
Q 000145 84 QAMPLFISILRS---GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK---SESTDTRKAAAEALYEVSSGGL 157 (2054)
Q Consensus 84 GgVp~LV~LLks---~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~---sed~eVr~aAa~AL~nLS~~~~ 157 (2054)
.|+..+..+|+. ++++++.++..-|..+-..++. --.|+-+|. +++..+|..|--.|.|=-.++.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccch---------hceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 467777777764 5788888887777665322221 112222232 2466666666666665443322
Q ss_pred CCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHH-HHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHH
Q 000145 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALR-NLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSN 235 (2054)
Q Consensus 158 nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~-nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~ 235 (2054)
+.-.......++..+++.+ .. .++ +.....+++. .+.+.. -..| ..+++.|+.+|.+++...++.
T Consensus 81 ~~~~~~~~~yiKs~~l~~l----gd---~~~-lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d~n~~Eg 147 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGL----GD---ASP-LIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPDYNTCEG 147 (885)
T ss_pred cCCChHHHHHHHHHHHhhc----cC---chH-HHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCcccccch
Confidence 2122223333444333322 11 122 2223233222 222211 0111 236899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcch-hcc---cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 236 AASLLARLMLAFGDSIPT-VID---SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 236 A~~aL~nLs~~~~~~r~~-i~~---sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
|..+|+++|....+.-.. ..+ .-.+|.+++.+++ +++.+|..|..++..+....+..- ...-..-++.+..+-.
T Consensus 148 A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalan 225 (885)
T KOG2023|consen 148 AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALAN 225 (885)
T ss_pred hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHcc
Confidence 999999999433221111 001 1368899999985 577999999988877655311111 1111233445555555
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gI 391 (2054)
+++++ +|.+...+|.-+...-+.. +. . .-.++
T Consensus 226 D~~~e---------VRk~vC~alv~Llevr~dk------l~-------------------------------p--hl~~I 257 (885)
T KOG2023|consen 226 DEDPE---------VRKNVCRALVFLLEVRPDK------LV-------------------------------P--HLDNI 257 (885)
T ss_pred CCCHH---------HHHHHHHHHHHHHHhcHHh------cc-------------------------------c--chHHH
Confidence 55554 3444444443322111100 00 0 01134
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhc--chHHHHHHHhccCCH-----------------------
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIGLITMATA----------------------- 446 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~--g~I~~LI~LL~ssd~----------------------- 446 (2054)
+.+.....+..+.. +-..|++-...++..+..+..+... ..++.|+.-+..++.
T Consensus 258 veyML~~tqd~dE~-VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP 336 (885)
T KOG2023|consen 258 VEYMLQRTQDVDEN-VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP 336 (885)
T ss_pred HHHHHHHccCcchh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc
Confidence 45555555544433 6666666666666666333333221 334444332211110
Q ss_pred ---------------------------------HHHHHHHHHHHHhcccCccchhhhhcccc----HHHHHhhhcCCChh
Q 000145 447 ---------------------------------DVREYLILSLTKLCRREVGIWEAIGKREG----IQLLISLLGLSSEQ 489 (2054)
Q Consensus 447 ---------------------------------evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg----Ip~LV~LL~s~d~~ 489 (2054)
..++..+.+|--++.- ..... .|.|.+.|.+++=.
T Consensus 337 Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--------f~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 337 RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--------FGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred hhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--------hHHHHHHHHHHHHHHHcCcchhh
Confidence 1233333333333321 11222 34555556666667
Q ss_pred hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCChHHHHHhh
Q 000145 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLL 567 (2054)
Q Consensus 490 Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~--sd~~r~~I~e~GaI~aLV~LL 567 (2054)
+|+.++-+|+.++.+.-+.-..-. ...+|.|+++|.+..+-+|...+|+|...+.. .+...+.+ ...+..|++.+
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~l 485 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRL 485 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHH
Confidence 999999999999874321100000 12467788899999999999999999987652 11111221 12233444444
Q ss_pred ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC----------CCcchHHHHHHHHHHHHhh----hcchHHHHhhh
Q 000145 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLG----------DSPSSKAHVIKVLGHVLTM----ALQEDLVQKGS 633 (2054)
Q Consensus 568 kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~----------~~~~V~~~a~~AL~~La~~----~~~~d~~~~~l 633 (2054)
-+++..+|+.|+.+...+-.....+.+|.|-.+|+. .+--+ ...|++.++.. .+++...+.
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~Yiqi-- 560 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQI-- 560 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHH--
Confidence 578999999999999999877666777776665542 11112 23455555422 233332222
Q ss_pred hcccchHHHHH---HhccCC-------------------------HHHHHHHHHHHHHHhh----c--------------
Q 000145 634 AANKGLRSLVQ---VLNSSN-------------------------EENQEYAASVLADLFS----M-------------- 667 (2054)
Q Consensus 634 ~~~GaI~~LV~---LLks~s-------------------------~evre~Aa~ALanLas----~-------------- 667 (2054)
.+++|++ ++++++ +.+-+.+.+.+.+... .
T Consensus 561 ----LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 561 ----LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI 636 (885)
T ss_pred ----hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence 2344443 222222 3333444444442211 0
Q ss_pred --------------ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh
Q 000145 668 --------------RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA 733 (2054)
Q Consensus 668 --------------~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL 733 (2054)
.......+.+.+...-+...+.+..++||..|=.-|+.++....+ ..+.. ....++.|-.-+
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p~--~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIPN--LADFLPILGANL 712 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccch--HHHHHHHHhhcC
Confidence 011112233456677778888999999999888888888873222 22211 112333333334
Q ss_pred hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh
Q 000145 734 KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811 (2054)
Q Consensus 734 ~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~ 811 (2054)
+.....+..+|+|+++.++..-....+..-...+..|+..+... ...+-++.+-.+++|+...| +.++- .. ...
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P--e~vAp-~l-~~f 788 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP--EEVAP-HL-DSF 788 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH--Hhcch-hH-HHH
Confidence 44566788899999999985222111111123455566665544 45788999999999998765 22221 11 335
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 812 VLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 812 v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+.+-+..++.-+++ ..+..|-+.+.++-.
T Consensus 789 ~~pWc~sl~~i~Dn-eEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 789 MRPWCTSLRNIDDN-EEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHHHhcccccc-hhHHHHHHHHHHhee
Confidence 55666666644433 357778887777664
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.7e-07 Score=109.38 Aligned_cols=372 Identities=14% Similarity=0.131 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
.-.-+..-|.+++.+-.....+.....+.+|+..+..++.+........|..++.- .+++..+.+.|.+..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC
Confidence 33445566788888888888889999999999999999999888888999999987 68888898999999999999999
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
+++.+...+..|.|++. +...|..++..|-+|.|+.+|.+... ...|...|+.++. ++..+.++....+|+.+...
T Consensus 358 h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 68899999999999999999976532 3457788999988 56778889999999999874
Q ss_pred hc-cCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 567 LK-SGGPKGQDASAMALTKLIRAAD-------SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 567 Lk-S~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
+- ..+.++-........|++.... -..+..|++.. ++.++ .....+++++.+... .+..+. .
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~---tqn~Fi--d 504 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGA---TQNMFI--D 504 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccch---HHHHHH--H
Confidence 43 3444554444444557765532 22445555543 23322 123445555543221 111111 1
Q ss_pred chHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCccc
Q 000145 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 638 aI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs--~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.+..|...++.. +++---.+.+.|+||.-.+-+-...+-+...+|.+-..|+.+- +..+....-+++-++. ..
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~-- 580 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL-- 580 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh--
Confidence 356666767665 4555667888888987655555555666788999988887652 3455555555555554 21
Q ss_pred chhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCc-HHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDV-VSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~-I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
....-+...++++.|+++|+. .+++.....+.+...+..+...|..++++.. -..++++|++.+.++|+-+-.+|--
T Consensus 581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 233345567899999999987 5667777778888888778777877776654 4567899999999999988888887
Q ss_pred hhhcC
Q 000145 792 LLKHF 796 (2054)
Q Consensus 792 L~~~~ 796 (2054)
++.+.
T Consensus 661 iae~d 665 (791)
T KOG1222|consen 661 IAEHD 665 (791)
T ss_pred HHHhh
Confidence 77754
No 35
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.91 E-value=4e-08 Score=116.07 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=155.7
Q ss_pred cccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 635 ANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+++.++.|+.+|+.. ++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.+.++.+|..|..+|.|++.. .
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~- 85 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--D- 85 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--h-
Confidence 455689999999864 89999999999999877 789999999999999999999999999999999999999862 2
Q ss_pred cchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
+++..+. ..+..+++...+ -+..++..++++|.||+..++.+..+.. .++.+.+++.+|+..+|..+.++|.|
T Consensus 86 -en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 -ENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred -hhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444333 257777765544 3678899999999999987777666644 79999999999999999999999999
Q ss_pred hhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 792 LLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 792 L~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
|+.+. ...+.+....+...++.+++. +.+......++....++..
T Consensus 161 LS~np----~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 161 LSENP----DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred hccCH----HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 99974 455555566688899999974 3344456667777777753
No 36
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.90 E-value=0.00034 Score=91.30 Aligned_cols=777 Identities=14% Similarity=0.127 Sum_probs=370.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHHHH
Q 000145 43 KFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKV 121 (2054)
Q Consensus 43 qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~~v 121 (2054)
.++++..++..+ -|..|+.-|..--... ..+--.......+..++++|.+.+.+++..|.+.|+-+.+ -.+.+.+
T Consensus 9 ~LlekmtssDKD--fRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD--FRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE- 84 (1233)
T ss_pred HHHHHccCCCcc--hhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH-
Confidence 556666544433 3777777665432211 0000000112368899999999999999999999998862 1222111
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHH-HHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC-C--CChhHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN-K--QDNVVQGFVTGA 197 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL-~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s-~--~d~~V~e~Al~a 197 (2054)
-.+..|..-+-++-...|.-+.-.| ..++.-.. . ........+.+.+...+.... + +...+.-.++..
T Consensus 85 ---~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P--~---~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDi 156 (1233)
T KOG1824|consen 85 ---TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP--S---SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDI 156 (1233)
T ss_pred ---HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--c---cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 1223333222122222222222222 22222100 0 111222334444444433221 0 112244444555
Q ss_pred HHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHH
Q 000145 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2054)
Q Consensus 198 L~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~ 277 (2054)
+.-+-+.--+-..- .+.+-...++.-+.+....++..++.+|..++...+ ...-.+.+..|++-|.+......-.
T Consensus 157 l~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~r 231 (1233)
T KOG1824|consen 157 LADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLSNRTQMSATR 231 (1233)
T ss_pred HHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHH
Confidence 54443322111000 233334555556666778899999999999984321 2223456677777775433322222
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc
Q 000145 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2054)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~ 357 (2054)
.-..+|..++.. ...|..-.-...++.+.+.+..-..+ .+.+++.++++|...-..-|. +.+++ .
T Consensus 232 t~Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~------dDELrE~~lQale~fl~rcp~------ei~p~--~ 296 (1233)
T KOG1824|consen 232 TYIQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEED------DDELREYCLQALESFLRRCPK------EILPH--V 296 (1233)
T ss_pred HHHHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccC------cHHHHHHHHHHHHHHHHhChh------hhccc--c
Confidence 233334443331 22232222356778888887332111 112778888887654211111 00100 0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHc------CCCC----hhhHHHHHHHHHHHh-hcChhhhH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL------KPHD----NKLVQERVLEAMASL-YGNIFLSQ 426 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LL------k~~~----~e~Vq~~Aa~AL~~L-~~n~~~~~ 426 (2054)
.+-+--.+..+.|+. ....+.- +.+....+-.-= .+.| .+.+|..++.++..+ ....+.-.
T Consensus 297 pei~~l~l~yisYDP-------Ny~yd~~-eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~ 368 (1233)
T KOG1824|consen 297 PEIINLCLSYISYDP-------NYNYDTE-EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLP 368 (1233)
T ss_pred hHHHHHHHHHhccCC-------CCCCCCc-cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHH
Confidence 111111122222221 1100000 000001110000 0011 123888888888776 33333222
Q ss_pred HHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccch------hhhhccccHH-----------H----HHhhhcC
Q 000145 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW------EAIGKREGIQ-----------L----LISLLGL 485 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r------~~Ive~ggIp-----------~----LV~LL~s 485 (2054)
.+.+ ..-+.+|.-++.-.+.++.....+...+-.+.+... +.+ +.||.+ . +-+.+++
T Consensus 369 ~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~-e~~g~~s~~~~L~~~~~~iVkai~~qlr~ 446 (1233)
T KOG1824|consen 369 DFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAM-EQGGTPSDLSMLSDQVPLIVKAIQKQLRE 446 (1233)
T ss_pred HHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhh-hccCCccchHHHHhhhHHHHHHHHHHHhh
Confidence 2221 122445555554445555444443333322111000 011 113222 2 3334455
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHh-cCChh-HHHHHHHcCChH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILC-CHSED-IRACVESAGAVP 561 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa-~~sd~-~r~~I~e~GaI~ 561 (2054)
.+...+..+...|..+....++.-..- ....+|.+...|.+. +...+..+...|.+.. .++.+ ....+ .--.+
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~--~~Ls~ 523 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL--SALSP 523 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch--hhhhh
Confidence 555566666666666665333321100 112455666666543 5666777777666553 33332 11111 22334
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcc
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e--------------~~~Ip~Lv~LL~--~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
+++....+.-+.+-..|..++..+..... ...+..-++.|+ +.|.+|++.+..|++.+...-.
T Consensus 524 ~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg- 602 (1233)
T KOG1824|consen 524 PVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG- 602 (1233)
T ss_pred HHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-
Confidence 44455566667777777777777765411 123344455554 5677899999999988764322
Q ss_pred hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGA 705 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~n 705 (2054)
|..+.. -...++.++.-+ +++-+|-.|++|+..++...-.+-..-.-..+++.+...++......+.....++-.
T Consensus 603 -D~l~~e--L~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~ 677 (1233)
T KOG1824|consen 603 -DFLGNE--LPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDK 677 (1233)
T ss_pred -hhhhhh--hHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 111233344433 588899999999999987322222222334677888888887777777777777766
Q ss_pred hhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCH------
Q 000145 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS------ 779 (2054)
Q Consensus 706 Ls~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~------ 779 (2054)
|...-. +.......+. ++..+..++...+..+.+.|+..|+.+...+....--.....++.++.++++.--
T Consensus 678 L~~~~~--~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 678 LVKNYS--DSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHHHh--ccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHH
Confidence 654111 1111122221 4445566677777888888999998886644332222233334444444432211
Q ss_pred ----------------------------------------HHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhh
Q 000145 780 ----------------------------------------EGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSL 819 (2054)
Q Consensus 780 ----------------------------------------evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL 819 (2054)
+.-..-+.|.+.|+...| + .....+.+|+.-+
T Consensus 755 ~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~------~s~s~a~kl~~~~ 826 (1233)
T KOG1824|consen 755 ALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--Q------KSKSLATKLIQDL 826 (1233)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--c------cchhHHHHHHHHH
Confidence 111112222222222211 0 0123445555555
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 820 NAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 820 ~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
.+.+.....+.-|+-.+|-+.+-+. . ...+..-..+++.+.+++.+++..|..+|+++-..+
T Consensus 827 ~s~~s~~~ikvfa~LslGElgr~~~-----~------s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 827 QSPKSSDSIKVFALLSLGELGRRKD-----L------SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred hCCCCchhHHHHHHhhhhhhccCCC-----C------CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 5444444445555555555543211 1 001223457789999999999999999999987655
No 37
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.88 E-value=8.3e-08 Score=113.38 Aligned_cols=196 Identities=21% Similarity=0.233 Sum_probs=161.8
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
+....+ +.|+.+++...++.+++.+..++++.+..+..+..+.+.|+++.+..++.++++.++..|..++.+++.. .+
T Consensus 9 l~~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 444444 6778888877666799999999999999999999999999999999999999999999999999999887 56
Q ss_pred chhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH
Q 000145 466 IWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL 543 (2054)
++..|- ..++.+.+...+. +..+|..++++|.||+. .++++..+. +.++.++.+|.+++..+|.++.++|.||
T Consensus 87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 666662 3566666644433 67899999999999987 455555553 4799999999999999999999999999
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhh
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~ 589 (2054)
+.+.+..++++ ..+++..++.++... +.+....+.+...|+..+-
T Consensus 162 S~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 162 SENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred ccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99655556665 467899999998775 6788899999999998763
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.86 E-value=7.3e-05 Score=100.21 Aligned_cols=515 Identities=12% Similarity=0.043 Sum_probs=311.8
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~-vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~ 161 (2054)
.|-+..|-..|++++..-+.++.+ ++..++.+.+.- .+++.+++++.++|.++++-+.-.|.+.+.. .+
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~----~p 100 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARL----QP 100 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----Ch
Confidence 456777888888887776666665 557776665443 3567788888889999999999999998852 22
Q ss_pred hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 162 ~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
+ ...+ ++..|.+=+.+++ +.++..|+++|.++.... +.+ -.+..+.+.+.+.++.||..|+.++.
T Consensus 101 e-lalL----aINtl~KDl~d~N---p~IRaLALRtLs~Ir~~~------i~e-~l~~~lkk~L~D~~pYVRKtAalai~ 165 (746)
T PTZ00429 101 E-KALL----AVNTFLQDTTNSS---PVVRALAVRTMMCIRVSS------VLE-YTLEPLRRAVADPDPYVRKTAAMGLG 165 (746)
T ss_pred H-HHHH----HHHHHHHHcCCCC---HHHHHHHHHHHHcCCcHH------HHH-HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1112 5677777666554 678988888888775522 221 13556677788889999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
++...+++ .+.+.+.++.|..++. +.+..+...|..+|..+...+++.- -...+.+..|+..+.+-+.+
T Consensus 166 Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW----- 234 (746)
T PTZ00429 166 KLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEW----- 234 (746)
T ss_pred HHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChH-----
Confidence 99866653 2345678888999887 6788999999998888865422110 00011111111111111100
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
T Consensus 235 -------------------------------------------------------------------------------- 234 (746)
T PTZ00429 235 -------------------------------------------------------------------------------- 234 (746)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccC-ccchhhhhccccHHHHH
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s-~e~r~~Ive~ggIp~LV 480 (2054)
.|......|.. +...+ ... ....+..+...+++.++.+...++.++.++.... ++....... ...++++
T Consensus 235 -----~Qi~IL~lL~~-y~P~~-~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv 304 (746)
T PTZ00429 235 -----GQLYILELLAA-QRPSD-KES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALL 304 (746)
T ss_pred -----HHHHHHHHHHh-cCCCC-cHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHH
Confidence 11111111110 00000 000 0134455667778888888999998888887542 121111111 1225567
Q ss_pred hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.++ ++++++|-.++..+..+....+ .+.... +..+.-. .++...++.....+|..|+.. +..... +
T Consensus 305 ~L~-ss~~eiqyvaLr~I~~i~~~~P----~lf~~~-~~~Ff~~-~~Dp~yIK~~KLeIL~~Lane-~Nv~~I------L 370 (746)
T PTZ00429 305 TLS-RRDAETQYIVCKNIHALLVIFP----NLLRTN-LDSFYVR-YSDPPFVKLEKLRLLLKLVTP-SVAPEI------L 370 (746)
T ss_pred Hhh-CCCccHHHHHHHHHHHHHHHCH----HHHHHH-HHhhhcc-cCCcHHHHHHHHHHHHHHcCc-ccHHHH------H
Confidence 664 5677888888888877766332 222221 2222222 233456899999999999863 222222 3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
.-|.+...+.+.+.+..+..++++++..-. ...+..|++++..... +..++..++..+...-+.. .
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~----------~ 439 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL----------L 439 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH----------H
Confidence 556666678888999999999999987522 3567888888876443 3344555565554322211 1
Q ss_pred chHHHHHHh---ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 638 GLRSLVQVL---NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 638 aI~~LV~LL---ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.+..|+... .-.+++.|...+|+|...+.. -++. ...+..++.-..+.++.+|.....+..++....+.
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~-I~~a-----~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-- 511 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF-IENG-----KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-- 511 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh-HhhH-----HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH--
Confidence 244555433 124788999999999998762 2221 12344444444567888999988889988874443
Q ss_pred chhHHHHhcCChhhHHhhh-h-cCCHHHHHHHHHHHHHhhCCh--HHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLA-K-TSSIDAAETAVAALANLLSDP--DIAAEVL 762 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL-~-s~d~~Vre~Al~AL~NLa~~~--e~r~~Iv 762 (2054)
..+. .+..++..+ + +.++++|..|..-..-|..++ +..++++
T Consensus 512 ~~~~------~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv 557 (746)
T PTZ00429 512 GMEP------QLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVV 557 (746)
T ss_pred HHHH------HHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2221 334455433 3 477899999988777666554 3334554
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.84 E-value=2.4e-08 Score=103.02 Aligned_cols=118 Identities=33% Similarity=0.398 Sum_probs=109.7
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd 548 (2054)
.+++.|+++.+++++.+++..++..++.+|++++..+++.+..+.+.|+++.++++|.++++.++..++++|++|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999778888888899999999999999999999999999999999877
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHH
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs 586 (2054)
..+..+.+.|.++.|++++.+.+.++++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888888999999999999999999999999999986
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=7.9e-06 Score=109.24 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=254.7
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHH-HhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMA-SLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~-~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
.-|...|+..+.. .+..+.+-+. .+..+.++. ....-.+.++.+.+.++++-.-.+|.+.+..+++.. +
T Consensus 35 ~ELr~~L~s~~~~-~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l- 104 (746)
T PTZ00429 35 AELQNDLNGTDSY-RKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L- 104 (746)
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H-
Confidence 4455556665543 4445554333 332222222 234556778888888888888888888876544432 1
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
-.++.+.+=++++|+.+|..|++.++++... + +.+ -.++++.+.|.+.++-||..|+-++.++-..++
T Consensus 105 --LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--- 172 (746)
T PTZ00429 105 --LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--S----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--- 172 (746)
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--H----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---
Confidence 2467788888899999999999998887651 1 111 145667788889999999999999999865333
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
+.+.+.+.++.|.+++.+.++.+..+|..+|..+..... ...+..++..+.+-++-.+..+.+.|... .+.+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ-RPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCc
Confidence 334456788889999999999999999999999975421 23344455555555566666666666431 11112
Q ss_pred hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~-~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
.+. ...+..+...+++.|+.+.-.|++++.++.... ++....+ -....++++.++ +++++++-.+.+.|.
T Consensus 252 ~e~-------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 252 ESA-------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIH 322 (746)
T ss_pred HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHH
Confidence 111 235778888899999999999999999997532 2211111 112336667664 567788888888887
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~ 784 (2054)
-+....+ .+.... +..+....+ +...++...+..|..|+... +...| +..|..+..+.+.++++.
T Consensus 323 ~i~~~~P-------~lf~~~-~~~Ff~~~~-Dp~yIK~~KLeIL~~Lane~-Nv~~I-----L~EL~eYa~d~D~ef~r~ 387 (746)
T PTZ00429 323 ALLVIFP-------NLLRTN-LDSFYVRYS-DPPFVKLEKLRLLLKLVTPS-VAPEI-----LKELAEYASGVDMVFVVE 387 (746)
T ss_pred HHHHHCH-------HHHHHH-HHhhhcccC-CcHHHHHHHHHHHHHHcCcc-cHHHH-----HHHHHHHhhcCCHHHHHH
Confidence 7765222 122221 233333333 34568999999999998533 33333 356778888899999999
Q ss_pred HHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 785 Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
++.++++++...+. . ....+..|+++++.+. +. ..+++.++..+-+
T Consensus 388 aIrAIg~lA~k~~~---~-----a~~cV~~Ll~ll~~~~-~~--v~e~i~vik~Ilr 433 (746)
T PTZ00429 388 VVRAIASLAIKVDS---V-----APDCANLLLQIVDRRP-EL--LPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHHHHHhChH---H-----HHHHHHHHHHHhcCCc-hh--HHHHHHHHHHHHH
Confidence 99999999975421 1 1446777888886432 22 4456666666643
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.7e-06 Score=103.85 Aligned_cols=623 Identities=17% Similarity=0.139 Sum_probs=331.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc--------CcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE--------GVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 125 GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a--------G~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
.++|.|..+|.++|....+.|.++|..++.+. . .+.+. =.+|.++++.+.++ +.++.+|++
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-------a-~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~ 196 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-------A-QFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVG 196 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-------H-HHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHh
Confidence 45789999999999899999999999999631 1 12222 26789999988775 568888888
Q ss_pred HHHHHhcCCCchhHHHHh-hCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhH
Q 000145 197 ALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~e-aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~V 275 (2054)
++-..--.... ..+.+ ..-++.+-.+-.++++++|.+.|++|.-|....++..... -.+.+.+.++.-+ +.|.++
T Consensus 197 cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tq-d~dE~V 272 (885)
T KOG2023|consen 197 CVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQ-DVDENV 272 (885)
T ss_pred hhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHcc-CcchhH
Confidence 87765443221 11111 1234555666677889999999999998885444322221 2357777777776 577788
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHh--cCCHHHHHHhhcCCchhhh--h--------hhhhhhhhhHHHHHHHHHhcCchh
Q 000145 276 RASAADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECM--Q--------GQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~I~e--aggL~~LIeLL~s~s~e~~--q--------~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
...|++....++.. +.++..+.. ...+|.|+.-+.-...+.. . ....+.++-+-...=....++...
T Consensus 273 ALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 273 ALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 88999988888884 566555543 4566666654432221100 0 000000000000000000000000
Q ss_pred -------HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH
Q 000145 344 -------LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA 416 (2054)
Q Consensus 344 -------lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~ 416 (2054)
..+ =.+....=+.++..|..+..+++... .+.+ + .+-++|...+.+ +...+|+..+-++|
T Consensus 352 ~eDdddDe~D-DdD~~~dWNLRkCSAAaLDVLanvf~---------~elL-~-~l~PlLk~~L~~-~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 352 DEDDDDDEDD-DDDAFSDWNLRKCSAAALDVLANVFG---------DELL-P-ILLPLLKEHLSS-EEWKVREAGVLALG 418 (885)
T ss_pred cccccccccc-cccccccccHhhccHHHHHHHHHhhH---------HHHH-H-HHHHHHHHHcCc-chhhhhhhhHHHHH
Confidence 000 00000000012333444444443210 0000 1 223556666655 45568999999999
Q ss_pred HhhcChhhhHHHhh--cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCc-cchhhhhccccHHHHHhhhcCCChhhhHH
Q 000145 417 SLYGNIFLSQWVSH--AEAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSSEQHQEY 493 (2054)
Q Consensus 417 ~L~~n~~~~~~L~~--~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~-e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~ 493 (2054)
.++..-- +-+.. ...++.+++++.+..+-++.-.+++|...+..-. +.++... ...+..|++.+-+++..+|+.
T Consensus 419 AIAEGcM--~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 419 AIAEGCM--QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHHHhcccHHHHHH
Confidence 9864321 11111 1467899999999999999999999888765310 1111111 123445556566789999999
Q ss_pred HHHHHHHHhhhccchhhHHHhhCCCchHhhhhh----------cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----------AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 494 Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~----------s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
|+.++..+-....+ .-+|.|-.+|. ..+-.+.-.|.++|+.=..+.-..++.+ .-.+|+|
T Consensus 496 AcsAfAtleE~A~~--------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPL 565 (885)
T KOG2023|consen 496 ACSAFATLEEEAGE--------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPL 565 (885)
T ss_pred HHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHH
Confidence 99998877542111 12233323322 2244455667777765543211112211 2246777
Q ss_pred H---HhhccCChhHHHHHHHHHHHHHHhhc-----------hh---hHHHHHHH-hcCCC-c-------chHHHHHHHHH
Q 000145 564 L---WLLKSGGPKGQDASAMALTKLIRAAD-----------SA---TINQLLAL-LLGDS-P-------SSKAHVIKVLG 617 (2054)
Q Consensus 564 V---~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~---~Ip~Lv~L-L~~~~-~-------~V~~~a~~AL~ 617 (2054)
+ ++++++++++ .--..+|..++..-. .+ .+..-.++ .+... + +.-.-+..-+.
T Consensus 566 i~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 566 IEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 7 3677777653 122233333332211 01 11111111 11111 1 00001122222
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
-|+... .......+...+..+.+...+.+.-+++|+.+...|..++....+...- .-.+.++-+-.-+....-.+..
T Consensus 645 GLaegL--g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p-~~~~fl~~lg~Nl~~~~isv~n 721 (885)
T KOG2023|consen 645 GLAEGL--GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP-NLADFLPILGANLNPENISVCN 721 (885)
T ss_pred HHHHHh--hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHhhcCChhhchHHH
Confidence 222111 1122333455666777777888889999999999999997632211100 0012222222223334456888
Q ss_pred HHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
+|.||++.++..... ..+ ..-.-++..|+..++. .+..+.++.+-+++.|.. +|+.-.-..+ ..+.+-..-+
T Consensus 722 NA~WAiGeia~k~g~--~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~-~f~~pWc~sl 796 (885)
T KOG2023|consen 722 NAIWAIGEIALKMGL--KMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD-SFMRPWCTSL 796 (885)
T ss_pred HHHHHHHHHHHHhch--hhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH-HHHHHHHHHh
Confidence 999999999862211 122 1122245556666665 345677788888888875 5554322111 1233333333
Q ss_pred c-CCCHHHHHHHHHHHHHhhhcCCC
Q 000145 775 A-EGTSEGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 775 ~-s~~~evr~~Aa~AL~nL~~~~~~ 798 (2054)
+ -++.+-|+.|-+-++++..-.|.
T Consensus 797 ~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 797 RNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred cccccchhHHHHHHHHHHheeeCch
Confidence 3 24677899999999999887664
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.80 E-value=5.5e-08 Score=100.28 Aligned_cols=118 Identities=27% Similarity=0.322 Sum_probs=106.0
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 674 ~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
.+++.|+++.++++++++++.++..++++|++++...+ ..+..+.+.|+++.+++++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999997433 566778888999999999999999999999999999998
Q ss_pred Ch-HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 754 DP-DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 754 ~~-e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
++ ..+..+.+.|.++.|++++.+++.++++.++++|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 65 556678889999999999999999999999999999873
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.0009 Score=86.37 Aligned_cols=761 Identities=13% Similarity=0.095 Sum_probs=370.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHH-hc-cCchhHHHHHhc---
Q 000145 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-LC-KDEDLRLKVLLG--- 124 (2054)
Q Consensus 52 sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~-Ls-~~ee~r~~v~~~--- 124 (2054)
+.+.-.+..|=..|..++..+ ..+++..|...|.+. ++..|..|.-.|+| |+ ++++.+......
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~n---------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQN---------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 455566777878888877765 245677777777764 45666666666655 44 444443333221
Q ss_pred ------CChH-HHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHH
Q 000145 125 ------GCIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVT 195 (2054)
Q Consensus 125 ------GaIp-~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~--~d~~V~e~Al 195 (2054)
.-|+ -+++-|++..|.....|++++..++.-+.+ .+.-|-|+..|.+.-. +...+.+..+
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-----------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-----------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-----------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1122 334667767778888889999888864321 1233444444432211 1124788999
Q ss_pred HHHHHHhcCCCchhHHHHhhCChHHHHhhhcc--CCHHHHHHHHHHHHHHH-hhcCCCcchhcccch-HHHHHHHhccCC
Q 000145 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLM-LAFGDSIPTVIDSGA-VKALVQLVGQNN 271 (2054)
Q Consensus 196 ~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s--~s~evq~~A~~aL~nLs-~~~~~~r~~i~~sGa-L~~LL~LL~s~~ 271 (2054)
.+|+.+|.+-+.....-.....+-.++.-... ++..+|..|..+|.+=. .....+..+. +.+. ....+.. .+++
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~-ern~iMqvvcEa-tq~~ 229 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM-ERNYIMQVVCEA-TQSP 229 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh-hhceeeeeeeec-ccCC
Confidence 99999999876541111112345556665544 46789999999998744 1111111111 1111 1112222 2367
Q ss_pred ChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhh
Q 000145 272 DISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2054)
Q Consensus 272 d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~el 351 (2054)
|.+++..|..+|..+-+-.-+.-+......-...-+..+.++..+ +...+++==++++..--.+--..++.
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de---------ValQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE---------VALQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888887653222222222222222334444443322 11122222222331000000001111
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch---hhHHHHHHHHcCCCC------hhhHHHHHHHHHHHhh--c
Q 000145 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA---RQIEDILVMLLKPHD------NKLVQERVLEAMASLY--G 420 (2054)
Q Consensus 352 L~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~---~gIe~~Lv~LLk~~~------~e~Vq~~Aa~AL~~L~--~ 420 (2054)
...+.. .....|.. ..+.|.|..++...+ +...-..+..+|.-.+ .
T Consensus 301 ~d~~~~-----------------------p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~ 357 (859)
T KOG1241|consen 301 VDQGLP-----------------------PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV 357 (859)
T ss_pred hhcCCC-----------------------chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh
Confidence 110000 00111111 134466666554421 1113333334443331 1
Q ss_pred ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 421 n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
.++ ++. ..++++-.-+++.+-.-+..++.+++..-......+..-...+++|.++.++.+++-.++..++|.|+.
T Consensus 358 ~D~----Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 358 GDD----IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGR 432 (859)
T ss_pred ccc----chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHH
Confidence 111 111 334444446677888888888899888766534444333345889999999998888899999999999
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhh---cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-------CChHHHHH-hhcc
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLE---AGSQKAREVAAHVLWILCCHSEDIRACVESA-------GAVPAFLW-LLKS 569 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~---s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~-------GaI~aLV~-LLkS 569 (2054)
++.+.++. +...--.+.++..|- +..|.+-.+++|++.+|+.. ..+...+. ...+.++. |++-
T Consensus 433 I~d~l~e~---~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea---~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 433 IADFLPEA---IINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEA---AYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHhhchhh---cccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHH---HHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99865532 222222333444333 23789999999999999742 11111111 11222222 2321
Q ss_pred ------CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHH
Q 000145 570 ------GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV 643 (2054)
Q Consensus 570 ------~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV 643 (2054)
.....|..+=.+|..+.........+.+.++...- -...-. .++ -
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i----l~kl~q-----------------------~i~--~ 557 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI----LEKLDQ-----------------------TIS--S 557 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----HHHHHH-----------------------HHH--H
Confidence 12245555555666555443222222211111100 000000 000 0
Q ss_pred HHhccCC----HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 644 QVLNSSN----EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 644 ~LLks~s----~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
+.+...+ .+++..-+..|..+...-...+ .-.....+..+++++.+ ++..+.+.|-.+++.+..+.. .+.
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg----~~F 632 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG----KGF 632 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh----HhH
Confidence 1111111 2333344444444433212211 11223456667777776 444566777777766665221 111
Q ss_pred HHHhcCChhhHHhhh-hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhc
Q 000145 719 SYIAEGDVKPLIKLA-KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~LL-~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~ 795 (2054)
.-.-....|.|..-| +..+-.|...|++..+.|+..=+..-...-.+....|++.|.+. |..+|-....+.+.++..
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 112233555566666 33555666678888887764111100112334667888888776 456676666676666542
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhcc---C-----CCCc-----hhHHHHHHHHHHHh-hcccCCCccCCcccccccCCC
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNA---M-----DMNG-----TDVADALEVVALLA-RTKQGLNFTYPPWAALAEVPS 861 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~s---g-----~~~~-----~~~~~AL~ALa~La-~~~~~~~~i~~~~~~~~~~~~ 861 (2054)
+.+.+.. .+...+.+++. . +.+. ..+..++++-.-+- .-+...... ...|
T Consensus 713 ------Ig~~F~~--Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~-------~~~p- 776 (859)
T KOG1241|consen 713 ------IGADFEP--YLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVM-------LVQP- 776 (859)
T ss_pred ------HHHhHHH--HHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------hhhc-
Confidence 2222222 22223333321 1 1111 13333333322221 111000000 0011
Q ss_pred chHHHHHhhh---cCC---hhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhH
Q 000145 862 SIEPLVCCLA---EGP---PPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAA 928 (2054)
Q Consensus 862 ~L~~Lv~ll~---~~~---~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~ 928 (2054)
.++.++.+.. ... ..+-..|+-.+..++..++.-..++.. .+.||..++.+-..+.....|.-+.+
T Consensus 777 ~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~-~~~~i~~~L~~~~k~~~~~tK~~A~w 848 (859)
T KOG1241|consen 777 YVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL-DEDWIKDFLNEGRKSSTQKTKDLARW 848 (859)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc-chHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 2344444433 221 226777888888888887653333332 35799999988776665555554444
No 44
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.72 E-value=0.00013 Score=92.47 Aligned_cols=608 Identities=13% Similarity=0.114 Sum_probs=312.0
Q ss_pred cCcHHHHHHHHcc----C-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Q 000145 83 AQAMPLFISILRS----G-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157 (2054)
Q Consensus 83 aGgVp~LV~LLks----~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~ 157 (2054)
+=|||.|+.+|++ . +.+.|.-+.++...+|.--.....-...+.+..+-+.|.++...+|..++.+|..|+...
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa- 584 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA- 584 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc-
Confidence 4466766666644 2 455555555555544321100000001133344445566678889999999998888631
Q ss_pred CCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHH
Q 000145 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237 (2054)
Q Consensus 158 nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~ 237 (2054)
.+-+.+.|-. ++..||+=...+. ++. ...-+.+++.||..-+.........-.+-.+.+-..+++.+.+...+
T Consensus 585 --~Pygie~fDs--VlkpLwkgir~hr--gk~-laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 585 --TPYGIEQFDS--VLKPLWKGIRQHR--GKE-LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred --CCcchHHHHH--HHHHHHHHHHHcc--ChH-HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHH
Confidence 2223333322 5666776665443 222 33456777777766554433333333455566666778889999999
Q ss_pred HHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHH--HHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCch
Q 000145 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD--ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK 315 (2054)
Q Consensus 238 ~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~--aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~ 315 (2054)
.++.+.|..+. .-........++.+...+-. ++.|.+ .-+.+.....+..+.+--...+..++.-+.+.+.
T Consensus 658 KVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~------rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e 730 (1172)
T KOG0213|consen 658 KVVKQCCATDG-VEPAYIRFDILPEFFFSFWG------RRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPE 730 (1172)
T ss_pred HHHHHHhcccC-CCHHHHhhhhhHHHHhhhhh------hhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccH
Confidence 99988884322 22334455566776655431 222210 0011110000111111111122233333333332
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000145 316 ECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2054)
Q Consensus 316 e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~-~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~ 394 (2054)
. .+.-+.+...++.+.++.. .. ....-..+..++|+..
T Consensus 731 ~---------yrkm~~etv~ri~~~lg~~-----------diderleE~lidgil~Afq--------------------- 769 (1172)
T KOG0213|consen 731 Q---------YRKMVAETVSRIVGRLGAA-----------DIDERLEERLIDGILYAFQ--------------------- 769 (1172)
T ss_pred H---------HHHHHHHHHHHHHhccccc-----------cccHHHHHHHHHHHHHHHH---------------------
Confidence 2 2222333333333211110 00 0000111222222221
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh------cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC--ccc
Q 000145 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH------AEAKKVLIGLITMATADVREYLILSLTKLCRRE--VGI 466 (2054)
Q Consensus 395 Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~------~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s--~e~ 466 (2054)
.....+.+.... + +.+.+.+.. ...+..++..|.+.++.++..|+..+..++.-- ..-
T Consensus 770 -----eqtt~d~vml~g---f------g~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e 835 (1172)
T KOG0213|consen 770 -----EQTTEDSVMLLG---F------GTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE 835 (1172)
T ss_pred -----hcccchhhhhhh---H------HHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH
Confidence 111111111111 1 111112211 122344566788889999999998888776421 111
Q ss_pred hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC
Q 000145 467 WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 467 r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~ 546 (2054)
-..+...|. .|.+.+....+++--..+.+++.+.....-.+..---.+.+|.|.-+|++...++++++...++.++..
T Consensus 836 e~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 836 EKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred HHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 112222222 356677778888777667777666653221222122357889999999999999999999999999875
Q ss_pred Chh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 547 SED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 547 sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
..+ .|+.+. .---|+++|++.+.++|+.+..+++.++...- ..++..|+.-|+..+.+.+.-..-+++..+.
T Consensus 914 gpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE- 989 (1172)
T KOG0213|consen 914 GPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAE- 989 (1172)
T ss_pred CcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhh-
Confidence 544 233332 12347789999999999999999999986632 2344444444443332222222222222211
Q ss_pred hcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARA 702 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~A 702 (2054)
...--.++++|.+=-+.++..++.....+|+.++..-.+.... .-..+.|-|-..|.+.+..-|.-|+.+
T Consensus 990 ---------~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd-Yiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 990 ---------TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD-YIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred ---------hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh-HHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 0001123566666556678899999999998887632221111 112345566667778888888889999
Q ss_pred HHHhhCCCCcccchhHHHHhcCChhhHHhhhh-------cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc
Q 000145 703 LGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-------TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2054)
Q Consensus 703 L~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~-------s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~ 775 (2054)
+.+++.+.+. .|....++.||+ ..++.+......++-.+. ..+.......-+.+-|+
T Consensus 1060 I~Hl~Lg~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r------~~Lg~~~~~~Y~~QGLF 1123 (1172)
T KOG0213|consen 1060 IKHLALGVPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR------VALGPQAMLKYCLQGLF 1123 (1172)
T ss_pred HHHHhcCCCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH------HHhchHHHHHHHHHhcc
Confidence 9999874332 233344444433 256677665555544332 11111122334445566
Q ss_pred CCCHHHHHHHHHHHHHh
Q 000145 776 EGTSEGKKNASRALHQL 792 (2054)
Q Consensus 776 s~~~evr~~Aa~AL~nL 792 (2054)
+....+|..-..++.++
T Consensus 1124 HParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1124 HPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred CcHHHHHHHHHHHHHhH
Confidence 66667776544444333
No 45
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.68 E-value=8.4e-05 Score=94.21 Aligned_cols=272 Identities=12% Similarity=0.125 Sum_probs=180.0
Q ss_pred CchHhhhhhcCCHHHHHHHHHHHHHHhcCChh--HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh------
Q 000145 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------ 589 (2054)
Q Consensus 518 Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~--~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------ 589 (2054)
+..+++.|++.++++|.+|+..++.++.--.. -.+.+...| -.|.+.+....|++.-....++..+.+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 34566789999999999999999988641111 112232223 23557777888999888888887776653
Q ss_pred --chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 590 --DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 590 --e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
-.+.+|.|...|++..+.|++.+...++.++...+..-..++.++ .---|+++|++.+.++|.+|...+..++..
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 256789999999999999999988888888755443222222211 123478889999999999999999998762
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~A 747 (2054)
+--++++..|+.-|+......|....-+++-.+..+.. -.+++.|.+=-..+...|+.-.+.+
T Consensus 956 -------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 956 -------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred -------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHHH
Confidence 22234455555555544444444444444444331111 1255666665666888999999999
Q ss_pred HHHhhCC--hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 748 LANLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 748 L~NLa~~--~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
|+.+... ...++.+-. ..|.|.+.|.+.|.--|+.|+.++.+|+-+.+. ..|..+.-+|++++=
T Consensus 1019 lsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iW 1084 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIW 1084 (1172)
T ss_pred HHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhh
Confidence 9999753 222333333 677788889999999999999999999886421 233445556666653
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00043 Score=89.16 Aligned_cols=622 Identities=16% Similarity=0.157 Sum_probs=333.8
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch-------
Q 000145 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY------- 208 (2054)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r------- 208 (2054)
++|+.++..|-.-|..++.. +- .+.+..|.+.|...++. ...+..|--.|.|--..++..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~----nf--------~~F~~~Ls~vl~n~~~~-~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQ----NF--------PQFLVLLSEVLANDNSS-DVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred CCCcchHHHHHHHHHHHHhc----cH--------HHHHHHHHHHHhccCCc-HHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 35777788888888888752 21 12444555555544422 234444555565544444321
Q ss_pred -hHHHHh---hCChHHHHhhhccCCHHHHHHHHHHHHHHHhh-cCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHH
Q 000145 209 -WRATLE---AGGVDIIVGLLSSDNAAAQSNAASLLARLMLA-FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2054)
Q Consensus 209 -~~aI~e---aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~-~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL 283 (2054)
|..+.. .-.-..+.+-|.++.+.....|..++..++.. -|.. .=.+.+..++..........+++....++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n----~wp~li~~lv~nv~~~~~~~~k~~sleal 154 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQN----QWPELIVTLVSNVGEEQASMVKESSLEAL 154 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchh----hCHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 111100 00112233444444455555555555555521 1110 01234444454444333446889999999
Q ss_pred HHHhhccHHHHHHHHh---cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 284 EALSSKSIKAKKAVVA---ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 284 ~nLs~~s~e~Rk~I~e---aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
+.++.+ -++. ... ...+-.++.-+... .+...++..|+.||.|--+..
T Consensus 155 Gyice~-i~pe--vl~~~sN~iLtaIv~gmrk~-------e~s~~vRLaa~~aL~nsLef~------------------- 205 (859)
T KOG1241|consen 155 GYICED-IDPE--VLEQQSNDILTAIVQGMRKE-------ETSAAVRLAALNALYNSLEFT------------------- 205 (859)
T ss_pred HHHHcc-CCHH--HHHHHHhHHHHHHHhhcccc-------CCchhHHHHHHHHHHHHHHHH-------------------
Confidence 999885 3332 222 22233333322221 112236666777765532100
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc--ChhhhHHHhhcchHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG--NIFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~--n~~~~~~L~~~g~I~~LI 438 (2054)
-..++ ++..+..+....+ .-...+ +..++..+..+|..+.. .......+. ......-+
T Consensus 206 -----------~~nF~--~E~ern~iMqvvc-----Eatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl 265 (859)
T KOG1241|consen 206 -----------KANFN--NEMERNYIMQVVC-----EATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITL 265 (859)
T ss_pred -----------HHhhc--cHhhhceeeeeee-----ecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00010 1111212211111 112223 33488888888877622 111111111 11223345
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchh---------------hhh---ccccHHHHHhhhcCCChh-------hhHH
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWE---------------AIG---KREGIQLLISLLGLSSEQ-------HQEY 493 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~---------------~Iv---e~ggIp~LV~LL~s~d~~-------Vr~~ 493 (2054)
.-+.+.++++...++..|+++|...-+... ... -.+.+|.|+++|...++. .-+.
T Consensus 266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 556788899999999999988764222100 000 013567788877543221 4455
Q ss_pred HHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChh
Q 000145 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573 (2054)
Q Consensus 494 Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~e 573 (2054)
|-.+|.-.+....+ .|+. ..+|.+-+-+++++-.-|+.++.+++.+-...+..+..-.-.+++|.++.++.++.--
T Consensus 346 Ag~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 55566555543221 1111 1223333356678889999999999999776665555444589999999999988888
Q ss_pred HHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--hHHHHhhhhcccc----
Q 000145 574 GQDASAMALTKLIRAAD---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ--EDLVQKGSAANKG---- 638 (2054)
Q Consensus 574 vq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~--~d~~~~~l~~~Ga---- 638 (2054)
++..++|+++.++...- ...++.+++-|.+ .|.+...+++++-.|+..... .+.-+.... ...
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-t~~y~~i 499 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-TPFYEAI 499 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-chhHHHH
Confidence 99999999999986621 2344556665654 477888888888888632110 000000000 112
Q ss_pred hHHHHHHhcc---CCHHHHHHHHHHHHHHhhcChhhhhhhhhCC---CHHHHHHHhc-----cCC----HHHHHHHHHHH
Q 000145 639 LRSLVQVLNS---SNEENQEYAASVLADLFSMRQDICGSLATDE---IVNPCMRLLT-----SNT----QMVATQSARAL 703 (2054)
Q Consensus 639 I~~LV~LLks---~s~evre~Aa~ALanLas~~~e~r~~Iv~~g---~V~~Lv~LL~-----dgs----~~vr~~AA~AL 703 (2054)
+..|+..... ...+.|..|-.+|..+....++.+-.++..- +...|-+.++ ..+ ..++..-+.+|
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 3333333322 1357899999999999887666655543321 1111212222 111 23455556666
Q ss_pred HHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHHHHH-cCCCH
Q 000145 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALTRVL-AEGTS 779 (2054)
Q Consensus 704 ~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV~LL-~s~~~ 779 (2054)
..+.+.... ..+. .....+..++.++.+ .+.-+.++|..+++.|+.+ +...+.+ +...|.|..-| ...+.
T Consensus 580 q~i~rk~~~--~~~~--~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 580 QSIIRKVGS--DIRE--VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHccc--cchh--HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHH
Confidence 666652222 1221 122355567777777 4556777888888888652 2222222 23556666555 44467
Q ss_pred HHHHHHHHHHHHhhhcCCCchhHhhhhh--hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 780 EGKKNASRALHQLLKHFPVGDVLKGNAQ--CRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~~~~~~e~i~~~i~--~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.+...|+..++.|++. ..+.+. +.+....|+..|.+...+...+-..+...|-++.
T Consensus 654 qVc~~aVglVgdl~ra------L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARA------LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHHHHHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHH
Confidence 8899999999999874 233333 3677889999999887777677777777776663
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.6e-06 Score=105.64 Aligned_cols=261 Identities=17% Similarity=0.168 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hhcHHHH-HHHhhhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccC
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIA-KAKKEAR-LLIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLCKD 114 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La-~~~d~ar-~~I~~~aGgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ 114 (2054)
-+++.+++..|+..+ ++..+.+++.-|+... ...++.- .+-+ ...||.|+.+|+++ +.++...||+.|..||.-
T Consensus 166 sSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv--~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPV--KSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred hHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 357888888887654 6666667777776553 3333322 2223 35899999999986 799999999999999854
Q ss_pred -chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHH
Q 000145 115 -EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQG 192 (2054)
Q Consensus 115 -ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e 192 (2054)
+++...+++.++||.|+.=|-. +=.++-+.++.+|..|+. .| -+.+.++|++...+..|+--+ ..+++
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-----~H--~~AiL~AG~l~a~LsylDFFS---i~aQR 312 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-----RH--PKAILQAGALSAVLSYLDFFS---IHAQR 312 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-----hc--cHHHHhcccHHHHHHHHHHHH---HHHHH
Confidence 7788888889999999955544 888899999999999996 22 358899999999999887554 34788
Q ss_pred HHHHHHHHHhcCCC-chhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh---cCCCcchhcccchHHHHHHHhc
Q 000145 193 FVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA---FGDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 193 ~Al~aL~nL~~~~e-~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~---~~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
.|+.+-.|+|..-. .....+.+ .+|.|..+|...+....+.++-++.++... .++.-+.+...|.+....+++.
T Consensus 313 ~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 99999999998732 12233444 799999999999999999999999999853 3444455677888888888885
Q ss_pred cC---CChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCC
Q 000145 269 QN---NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313 (2054)
Q Consensus 269 s~---~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~ 313 (2054)
-. -+..+.......+..++++++..+..+.+.+....|..++...
T Consensus 391 vt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 391 VTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred cCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 21 1234555667778888888899999999888888888877553
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-05 Score=102.72 Aligned_cols=379 Identities=14% Similarity=0.109 Sum_probs=258.8
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHH-hcccCccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 436 VLIGLIT-MATADVREYLILSLTK-LCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 436 ~LI~LL~-ssd~evq~~Aa~AL~~-Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.|+.=++ .+++..|..++.-|+. +...+.+.-.-+.-.-.+|.|+.+++.. +.+++..|+++|.+|+...+.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 3444343 4478888888876665 4445455544444456789999999865 78899999999999999889999999
Q ss_pred HhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-
Q 000145 513 TAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD- 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e- 590 (2054)
++.++||.|+.-| .-..-++-+++..+|..++.. ..+ .+.+.|++.+.+..+.--+...|+.|..+-.|++....
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~-AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPK-AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccH-HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999755 455789999999999999863 233 44579999999998888888999999999999997732
Q ss_pred ------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhhcccchHHHHHHhccC----CHHHHHHHHH
Q 000145 591 ------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAAS 659 (2054)
Q Consensus 591 ------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d~~~~~l~~~GaI~~LV~LLks~----s~evre~Aa~ 659 (2054)
.+.+|.|..+|+..+...-+.++-|+..+... ...++..++ +...|.+.-..+|+.-. +..+....++
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-HhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 46789999999998888888888888888754 344444443 56778888888887654 3456667778
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC--------------HHHHHHHHHHHHHhhCCCCc-------------
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNT--------------QMVATQSARALGALSRPTKT------------- 712 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs--------------~~vr~~AA~AL~nLs~s~~~------------- 712 (2054)
.|..++++.+..+....+.++...|..+|...+ |.-.-.-..-+..|.-..+.
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~ 486 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYE 486 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcc
Confidence 888888877888888888888888877774311 10000000000000000000
Q ss_pred -----------------------------------------------ccchhHHHHh----------cCChhhHHhhhhc
Q 000145 713 -----------------------------------------------KTTNKMSYIA----------EGDVKPLIKLAKT 735 (2054)
Q Consensus 713 -----------------------------------------------~d~~r~~I~~----------~gaV~~Lv~LL~s 735 (2054)
....|..+.. ...++.|++...+
T Consensus 487 ~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsS 566 (1051)
T KOG0168|consen 487 IVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSS 566 (1051)
T ss_pred cccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 0011111111 1255666666665
Q ss_pred -CCHHHHHHHHHHHHHhhC--ChHHHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh
Q 000145 736 -SSIDAAETAVAALANLLS--DPDIAAEVLLE-DVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811 (2054)
Q Consensus 736 -~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~-g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~ 811 (2054)
.+++||..++.||..+.. +++.-..+.+. ..-..+-.++...+..+---|..+.--|+..-| +.+-..+.++|.
T Consensus 567 sA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlp--d~F~~~F~REGV 644 (1051)
T KOG0168|consen 567 SANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLP--DTFSPSFRREGV 644 (1051)
T ss_pred cCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhH--HHhhhhHhhhhH
Confidence 688999999999999965 56655555544 445666678888888776666665555555432 555556666666
Q ss_pred HHHHHHhhc
Q 000145 812 VLTLVDSLN 820 (2054)
Q Consensus 812 v~~LV~LL~ 820 (2054)
+-..-++..
T Consensus 645 ~~~v~~L~~ 653 (1051)
T KOG0168|consen 645 FHAVKQLSV 653 (1051)
T ss_pred HHHHHHHhc
Confidence 555555554
No 49
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00066 Score=88.38 Aligned_cols=615 Identities=14% Similarity=0.116 Sum_probs=326.9
Q ss_pred cHHHHHHhhCCCC-------CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC-------------CHH
Q 000145 172 VVPTLWDQLNPKN-------KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-------------NAA 231 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s-------~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~-------------s~e 231 (2054)
|-|.|++.+.-.. ++...+.-.|...-..-|.++.-+.+.++..||++.|...++.- ...
T Consensus 1376 GYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~ 1455 (2235)
T KOG1789|consen 1376 GYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVR 1455 (2235)
T ss_pred cchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhh
Confidence 6677777654221 12213444444444444444555667888999999999887762 123
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhcc-cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhh
Q 000145 232 AQSNAASLLARLMLAFGDSIPTVID-SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2054)
Q Consensus 232 vq~~A~~aL~nLs~~~~~~r~~i~~-sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL 310 (2054)
+..+.++++...+ ..+..|+.+.+ ...|..++++++-++-+.+...+..++..++.+ +..+..+.++|.+=-|+.++
T Consensus 1456 vc~~v~~c~SVaa-QFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~L 1533 (2235)
T KOG1789|consen 1456 VCIHVCDCFSVAA-QFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPHL 1533 (2235)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHHH
Confidence 5556666666555 44455555554 356778888887555667777888899999996 88888999999999888888
Q ss_pred cCCch-----------hhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHH--------
Q 000145 311 VAPSK-----------ECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYA-------- 371 (2054)
Q Consensus 311 ~s~s~-----------e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~-------- 371 (2054)
...+. +.-+....+.+...+..+|+++.|..... +.++....+++.|..+..-
T Consensus 1534 f~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE--------~~TP~N~T~~~sL~alLTPyiAr~Lk~ 1605 (2235)
T KOG1789|consen 1534 FHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADE--------ENTPDNDTVQASLRALLTPYIARCLKL 1605 (2235)
T ss_pred hcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccc--------ccCCCChhHHHHHHHhccHHHHHHHHH
Confidence 55331 11111112223344566777666532211 0111122233333222110
Q ss_pred ------HHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHH-HH---hhcC----hhhhHH----------
Q 000145 372 ------LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-AS---LYGN----IFLSQW---------- 427 (2054)
Q Consensus 372 ------~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL-~~---L~~n----~~~~~~---------- 427 (2054)
+..++.+.+...-++.+ +...-|...++. ++++.+- +. .++. +...+.
T Consensus 1606 e~~~~iLk~LNsN~E~Py~IWNn-~TRaELLeFve~-------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1606 ETNDMVLKTLNSNMENPYMIWNN-GTRAELLEFVER-------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHhhcCCCCceeeecC-ccHHHHHHHHHH-------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 01111011111111111 111112211111 1111100 00 0000 000010
Q ss_pred --------Hhhcch-HHHHHHHhcc------------------------------C----CHHHHHHHHHHHHHhcccCc
Q 000145 428 --------VSHAEA-KKVLIGLITM------------------------------A----TADVREYLILSLTKLCRREV 464 (2054)
Q Consensus 428 --------L~~~g~-I~~LI~LL~s------------------------------s----d~evq~~Aa~AL~~Ls~~s~ 464 (2054)
+.+.+. -..|++.+++ + +.+-..-+..+|.|+...++
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nP 1757 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANP 1757 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCc
Confidence 000000 0112221111 0 11233455688899888777
Q ss_pred cchhhhhc----cccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHH
Q 000145 465 GIWEAIGK----REGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2054)
Q Consensus 465 e~r~~Ive----~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~a 539 (2054)
+....+.. -|-.+.+..++.+ ++++++.-|+..+..++. +.+.-..+...|.+..|+.+|.+ -|..|+.+..+
T Consensus 1758 dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1758 DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence 55433322 1445666666664 467899999988888776 56666667778877888887755 67889999999
Q ss_pred HHHHhcCChhHHHHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchh--hH--------HHHHHHhcCCCcch
Q 000145 540 LWILCCHSEDIRACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSA--TI--------NQLLALLLGDSPSS 608 (2054)
Q Consensus 540 L~nLa~~sd~~r~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~--~I--------p~Lv~LL~~~~~~V 608 (2054)
|+.|+...+-.++.+ +.|++.-+..++. +..+..|..++..++.+..+.-.| +- ..++..++++ |+
T Consensus 1836 LYAL~S~~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-PE- 1912 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-PE- 1912 (2235)
T ss_pred HHHHhcCcHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-HH-
Confidence 999998655555554 5888888876554 556788889999999998664221 11 1123333332 11
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhh---hcccchHHHHH-Hhcc--C----CHHHHHHHHHHHHHH----hhcChhhhhh
Q 000145 609 KAHVIKVLGHVLTMALQEDLVQKGS---AANKGLRSLVQ-VLNS--S----NEENQEYAASVLADL----FSMRQDICGS 674 (2054)
Q Consensus 609 ~~~a~~AL~~La~~~~~~d~~~~~l---~~~GaI~~LV~-LLks--~----s~evre~Aa~ALanL----as~~~e~r~~ 674 (2054)
.+.+++- .-...++.+.... .-.+.+..++. +.+. . +.++-|..+. .... .-+..-.|.-
T Consensus 1913 --AaVH~fE---~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~F 1986 (2235)
T KOG1789|consen 1913 --AAVHMFE---STSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREF 1986 (2235)
T ss_pred --HHHHHHh---ccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHH
Confidence 1111111 0011111110000 00111222211 1110 0 1111111111 0000 0000011111
Q ss_pred hhhC------------CCHHHHHHHhccCCHHHH--HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 675 LATD------------EIVNPCMRLLTSNTQMVA--TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 675 Iv~~------------g~V~~Lv~LL~dgs~~vr--~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
+.+. +.++.+..++...+++.. .--..|+-.|.+..| ...+.+-..|.++.++..+...+...
T Consensus 1987 i~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP---~LADqip~LGylPK~~~Am~~~n~s~ 2063 (2235)
T KOG1789|consen 1987 VVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP---NLADQLPSLGYLPKFCTAMCLQNTSA 2063 (2235)
T ss_pred hhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc---chhhhCCCccchHHHHHHHHhcCCcC
Confidence 2222 234455556654444322 222344455554333 45666777899999998887766666
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 741 AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
-..|+++|..|+.+....+.+..-..+.+++..|...-.-+- .|+++|.++.... .+...++....|.++-|+.+|+
T Consensus 2064 P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~G-LA~EalkR~~~r~--~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2064 PRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMG-LAAEALKRLMKRN--TGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHH-HHHHHHHHHHHHh--HHHHHHHHhccCcHHHHHHHhc
Confidence 678999999999988888888888888888887765433332 7899999998743 3566667777899999999997
Q ss_pred c
Q 000145 821 A 821 (2054)
Q Consensus 821 s 821 (2054)
.
T Consensus 2141 ~ 2141 (2235)
T KOG1789|consen 2141 S 2141 (2235)
T ss_pred c
Confidence 3
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.55 E-value=0.0065 Score=76.26 Aligned_cols=638 Identities=14% Similarity=0.109 Sum_probs=318.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHH-hccCchhHHHHHhc---C-
Q 000145 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-LCKDEDLRLKVLLG---G- 125 (2054)
Q Consensus 53 ss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~-Ls~~ee~r~~v~~~---G- 125 (2054)
+++..|..+=..|.++...+ +...+-.+++.|-+. .+..|..+.-+|++ |-..++.+.+-... |
T Consensus 17 pD~n~rl~aE~ql~~l~~~d---------F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 17 PDPNARLRAEAQLLELQSGD---------FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCccccHHHHHHHhcccc---------HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 33334444555566665544 122445555555443 45666666666644 32222222221111 1
Q ss_pred ------ChH-HHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHH
Q 000145 126 ------CIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTG 196 (2054)
Q Consensus 126 ------aIp-~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~ 196 (2054)
-|+ ..++.|.+..|..-..|++.+..++.... -.|.-|-|++.+.... .+......+++.
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~El-----------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~ 156 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMEL-----------PNSLWPGLMEEMVRNVGDEQPVSGKCESLG 156 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhC-----------ccccchHHHHHHHHhccccCchHhHHHHHH
Confidence 122 33477888889999999999999997432 1234555555554321 122356778999
Q ss_pred HHHHHhcCCCchhHHHHhhCC-hHHHH-hhhcc-CCHHHHHHHHHHHHH-HHhhcCCCcchhcccchHHHHHHHh---cc
Q 000145 197 ALRNLCGDKDGYWRATLEAGG-VDIIV-GLLSS-DNAAAQSNAASLLAR-LMLAFGDSIPTVIDSGAVKALVQLV---GQ 269 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~eaGG-I~~LV-~LL~s-~s~evq~~A~~aL~n-Ls~~~~~~r~~i~~sGaL~~LL~LL---~s 269 (2054)
+++++|...... ..+...+. +-.++ .-++. ++..+|..++.+|.. +.... ..+...+-..++++.. .+
T Consensus 157 ~~gy~ces~~Pe-~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~----~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 157 ICGYHCESEAPE-DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ----GNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred HHHHHhhccCHH-HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH----Hhhcchhhhchhheeeehhcc
Confidence 999999876552 22222222 22222 23332 456788889888877 33211 1111122222222222 13
Q ss_pred CCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhh
Q 000145 270 NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLG 349 (2054)
Q Consensus 270 ~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~ 349 (2054)
+++.+++..+..++..+-.-.-+ +|+ ..-++++-+ .++
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~------------------------fm~-----~ymE~aL~a-------------lt~ 269 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYK------------------------FMQ-----SYMENALAA-------------LTG 269 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH------------------------HHH-----HHHHHHHHH-------------HHH
Confidence 57777887777777665442111 111 011112111 122
Q ss_pred hhcCCCCchh--hHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 350 ELSQSPRLAA--PVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 350 elL~s~~~~~--~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
+.+++++... +..+.-.++|-. +. .+ .+-.+-+. ..+ .|.+ ....
T Consensus 270 ~~mks~nd~va~qavEfWsticeE--------ei--------d~-~~e~~~~p-e~p--~qn~-------------~fa~ 316 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEE--------EI--------DG-EMEDKYLP-EVP--AQNH-------------GFAR 316 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH--------Hh--------hh-HHHHhhcc-cCc--hhhc-------------chHH
Confidence 3333333311 101100111100 00 00 00000000 000 0000 0001
Q ss_pred HhhcchHHHHHHHhccCCH-------HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 428 VSHAEAKKVLIGLITMATA-------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~ssd~-------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
-.-.+.+|-|++|+...++ ..-..|..+|.-++.. .+..|.+ ..+.-.-+-+++++-.-|+.|+.+++.
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 1123567888888866332 2344555555544432 1122322 123333445677777889999999998
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc---cCChhHHHH
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---SGGPKGQDA 577 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk---S~~~evq~~ 577 (2054)
.-.+..+....-.-..++|.+.....++.--++..++|+++.++. .....+...|.++..+.-.- .+.|..-.+
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhhccchHHhh
Confidence 876322222222234678888888877777889999999999974 33444444566666554221 246777888
Q ss_pred HHHHHHHHHHhhch--------------hhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH
Q 000145 578 SAMALTKLIRAADS--------------ATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2054)
Q Consensus 578 AA~AL~nLs~~~e~--------------~~Ip~Lv~LL~--~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~ 641 (2054)
+.|...|+..+-.. ..+..|++--. .++...+.....+|+.|..
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~-------------------- 529 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL-------------------- 529 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh--------------------
Confidence 89999998766210 01111211111 1112222222333333221
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg----s~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
-..+.+.+..+..+..... .-+ ..+..+-+.+... .++++.+-...|..+.+..+. ..+
T Consensus 530 ------~~~d~V~~~~a~~~~~~~~-kl~--------~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~--~ie 592 (858)
T COG5215 530 ------ICPDAVSDILAGFYDYTSK-KLD--------ECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR--DIE 592 (858)
T ss_pred ------hcchhHHHHHHHHHHHHHH-HHH--------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccc
Confidence 1122222222222111111 000 0011111111111 245666667777777663332 111
Q ss_pred HHHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 718 MSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~d~-~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
. +....+..++.+|.+.++ -+......++++|+.+=+.+-+--.+..+|.|.+-|...+..+...|+..++.|+..-
T Consensus 593 ~--v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 593 D--VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred c--HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 1 111245567778887644 4455788888888765554545556678999999898888899999999999998742
Q ss_pred CCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 797 ~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
+.++.. -+.-....|++.+++...+...+-..+...+-++
T Consensus 671 --~~df~~--y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 671 --GTDFNI--YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred --hhhHHH--HHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 222221 2344677899999877666666666666666555
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.49 E-value=5.9e-06 Score=104.03 Aligned_cols=243 Identities=17% Similarity=0.072 Sum_probs=180.1
Q ss_pred ccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 474 EGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 474 ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+++.++..+. .++..++..++.++..... ..++..|++.|.+.++.++..++.+|+.+..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 46788888884 5556666655555432111 1137889999999999999999999998753
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.++.+.|+.++++.++.++..+..++.... ....+.+..+|++.++.++..+.++|+.+-
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------------ 175 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR----HDPGPALEAALTHEDALVRAAALRALGELP------------ 175 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc----cChHHHHHHHhcCCCHHHHHHHHHHHHhhc------------
Confidence 457788999999999999998887777642 235678999999999999999999988652
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
....++.|...+.+.++.+|..|++++..+.. .+++..+..+...........++..+...- .
T Consensus 176 --~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~--~-- 238 (410)
T TIGR02270 176 --RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG--G-- 238 (410)
T ss_pred --cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHhccCccHHHHHHHHHHhCC--c--
Confidence 23467888889999999999999999988754 345567777555444444444444444331 1
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
..++..|..++++.. ++..++.+|+.+. ....++.|+..+.+. .+++.|.+++.++
T Consensus 239 ----------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~~aR~A~eA~~~I 294 (410)
T TIGR02270 239 ----------PDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--PWARLAGEAFSLI 294 (410)
T ss_pred ----------hhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--HHHHHHHHHHHHh
Confidence 137788999998754 8999999999654 667899999988644 4999999999999
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
+.-
T Consensus 295 tG~ 297 (410)
T TIGR02270 295 TGM 297 (410)
T ss_pred hCC
Confidence 874
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.45 E-value=9e-05 Score=93.30 Aligned_cols=351 Identities=16% Similarity=0.102 Sum_probs=222.1
Q ss_pred CcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCchhHHHH-Hh-----cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 000145 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKV-LL-----GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2054)
Q Consensus 84 GgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee~r~~v-~~-----~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2054)
..+..++.+|+. ..+++..+....+..|..+...+... .+ .....+++++|..+|.-+...|+..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467788888876 47888889999998887665555443 33 245778889998889999999999999998754
Q ss_pred CCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHH
Q 000145 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQS 234 (2054)
Q Consensus 157 ~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~ 234 (2054)
.. ...+. ...-.+.-|...+..... ...+..++.+|.+|...++-| ..+.+.+|++.|+.+|... +.+.+-
T Consensus 133 ~~-~~~~~---~l~~~~~~l~~~l~~~~~--~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 133 LA-KMEGS---DLDYYFNWLKEQLNNITN--NDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred cc-ccchh---HHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHH
Confidence 31 11111 111133455666654432 235667889999999988777 5566777999999999764 347888
Q ss_pred HHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccH------HHHHHHHhcCCHHHHHH
Q 000145 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLIG 308 (2054)
Q Consensus 235 ~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~------e~Rk~I~eaggL~~LIe 308 (2054)
.++.++|-|++..+ ........+.++.++.+++....+.+-+.+..++.|+...+. .....|++.|. +.+++
T Consensus 206 ~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~ 283 (429)
T cd00256 206 QSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQ 283 (429)
T ss_pred HHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHH
Confidence 99999999996543 344556678999999999866667888899999999988421 22234444444 33444
Q ss_pred hhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 000145 309 AIVA-PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387 (2054)
Q Consensus 309 LL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~ 387 (2054)
.+.. +-.+. + -...|..+ .+.+ .+.+..++
T Consensus 284 ~L~~rk~~De------d-----L~edl~~L-----------~e~L---------~~~~k~lt------------------ 314 (429)
T cd00256 284 SLEQRKYDDE------D-----LTDDLKFL-----------TEEL---------KNSVQDLS------------------ 314 (429)
T ss_pred HHhcCCCCcH------H-----HHHHHHHH-----------HHHH---------HHHHHHcC------------------
Confidence 3332 11110 0 00111111 1100 00000000
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh----hhhHHHhhc--chHHHHHHHhc-cCCHHHHHHHHHHHHHhc
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI----FLSQWVSHA--EAKKVLIGLIT-MATADVREYLILSLTKLC 460 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~----~~~~~L~~~--g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls 460 (2054)
..+++...+....=. | +..-.++ ++...+.+. ..++.|+.++. +.++.+...|+.-++.++
T Consensus 315 --sfD~Y~~El~sg~L~-----W-----Sp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 315 --SFDEYKSELRSGRLH-----W-----SPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred --CHHHHHHHHhcCCcc-----C-----CCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 011222221111000 0 0000011 122233333 34678899884 567888888899999999
Q ss_pred ccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh
Q 000145 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 461 ~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
...|..+..+.+.|+=..+++++.++|+++|.+|+.++..|..+
T Consensus 383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 98777777777778888899999999999999999999888653
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.4e-05 Score=96.46 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=158.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCC
Q 000145 48 LHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGC 126 (2054)
Q Consensus 48 L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~~v~~~Ga 126 (2054)
+..++.+.++++.|+..|..++..-|++..++. -||.+.++..+++.+..+|..|+++++.... ++.+++.+.+.|+
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 344678889999999999999999988888775 4888899999999999999999999988775 4789999999999
Q ss_pred hHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000145 127 IPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 127 Ip~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~ 205 (2054)
.+.|+..|++ .+..+|..|+.++..+-.+ ...+...+...++...|.+.+.+++ .+..++..++..+..+...+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn----~~~g~~~fl~~~G~~~L~~vl~~~~-~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRN----NKPGQDEFLKLNGYQVLRDVLQSNN-TSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhc----CcHHHHHHHhcCCHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHhh
Confidence 9999999988 5777889999999999983 5678899999999999999999876 44677889999999998877
Q ss_pred CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 206 e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
......+...|-...+..+....+.++.+.++..+..+.
T Consensus 243 ~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 243 KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 665554555555556666666677788888877776655
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=1.4e-05 Score=100.84 Aligned_cols=241 Identities=17% Similarity=0.037 Sum_probs=180.7
Q ss_pred CCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000145 517 GIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2054)
Q Consensus 517 aIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip 595 (2054)
+++.++..|. ..++.++..++.++... +. ..++..|+..+.+.++.++..++.+|+.+- .....+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~---~~~a~~ 120 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG---GRQAEP 120 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC---chHHHH
Confidence 6777888884 55777777665555422 11 224889999999999999999999998764 446788
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
.|.++|+++++.++..+..+++.. .....+.+..+++++++.++..|+++|..+..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r---------------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAH---------------RHDPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhh---------------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 999999999998887777666541 12246788999999999999999999999876
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP 755 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~ 755 (2054)
...++.|...+.+.++.+|..|+.++..+.. + +++.+++.+.......+...+..++... .
T Consensus 177 --~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~------------~A~~~l~~~~~~~g~~~~~~l~~~lal~-~-- 237 (410)
T TIGR02270 177 --RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R------------LAWGVCRRFQVLEGGPHRQRLLVLLAVA-G-- 237 (410)
T ss_pred --ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H------------hHHHHHHHHHhccCccHHHHHHHHHHhC-C--
Confidence 5677888999999999999999999988753 2 2556777755555555555555555544 2
Q ss_pred HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHH
Q 000145 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEV 835 (2054)
Q Consensus 756 e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~A 835 (2054)
.+..++.|..++++.. +++.++++++.+... ..++.|+..+.+. ..+..|.++
T Consensus 238 -------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------~av~~L~~~l~d~----~~aR~A~eA 290 (410)
T TIGR02270 238 -------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV--------------EAAPWCLEAMREP----PWARLAGEA 290 (410)
T ss_pred -------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------------chHHHHHHHhcCc----HHHHHHHHH
Confidence 2257788888887744 999999999988873 3778888888632 257888888
Q ss_pred HHHHhh
Q 000145 836 VALLAR 841 (2054)
Q Consensus 836 La~La~ 841 (2054)
+..++.
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 888874
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0033 Score=81.45 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=181.2
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHH
Q 000145 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATL 108 (2054)
Q Consensus 31 med~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL 108 (2054)
.++.....+.|..+.+++..+ .-.++|..|++.|..+++ .+|..++ +.|++.|+..|+.+ +++....+..++
T Consensus 14 ~~k~~s~aETI~kLcDRvess-TL~eDRR~A~rgLKa~sr---kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl 87 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESS-TLLEDRRDAVRGLKAFSR---KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTL 87 (970)
T ss_pred CCccccHHhHHHHHHHHHhhc-cchhhHHHHHHHHHHHHH---HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHH
Confidence 344457788899999988664 567889999999999987 4566665 47999999999875 888888899888
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCCh
Q 000145 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDN 188 (2054)
Q Consensus 109 ~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~ 188 (2054)
..+...++.-..+ +++...-.-..+.= -..+-..+.|..|+..+...+ -
T Consensus 88 ~il~~~dd~~~v~--------------dds~qsdd~g~~ia--------------e~fik~qd~I~lll~~~e~~D---F 136 (970)
T KOG0946|consen 88 LILTSHDDSPEVM--------------DDSTQSDDLGLWIA--------------EQFIKNQDNITLLLQSLEEFD---F 136 (970)
T ss_pred HHHHhcCcchhhc--------------ccchhhhHHHHHHH--------------HHHHcCchhHHHHHHHHHhhc---h
Confidence 8875444311100 11111111111111 112234567888888886543 4
Q ss_pred hHHHHHHHHHHHHhcCCCch--hHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHH
Q 000145 189 VVQGFVTGALRNLCGDKDGY--WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 189 ~V~e~Al~aL~nL~~~~e~r--~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~L 266 (2054)
.|+..++..|.++.++.... ...+....||..++.+|.+....+|..++-.|+.+...++..++.+.=.++...|..+
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsI 216 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSI 216 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 58888999999888776443 3345667899999999999999999999999999999888888888888999999999
Q ss_pred hccCC--C-hhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 267 VGQNN--D-ISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 267 L~s~~--d-~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
+.... + .-|..-|...+.||..+|..++.-+.+.+-++.|..++.-
T Consensus 217 IeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 217 IEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 96322 2 2466778889999999988999999999999999887744
No 56
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.016 Score=76.24 Aligned_cols=351 Identities=13% Similarity=0.130 Sum_probs=216.9
Q ss_pred HHHHHHHHHh-hcChhhhHHHhhc----chHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 409 ERVLEAMASL-YGNIFLSQWVSHA----EAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 409 ~~Aa~AL~~L-~~n~~~~~~L~~~----g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
+-+..+|.|+ ..++++...+... +-.+.++.++.. +++.+|.-+...+..++.+ .+.-..+++.+.+..|+++
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHH
Confidence 4456677777 3567666555443 345666666654 5678898888888877776 5666777888888888888
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChh---HH-------
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSED---IR------- 551 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~---~r------- 551 (2054)
|.+ -+..|+.++..|..|++ +++.-+...+.|++.-+..++. +.++.+|.+++..|+.|..+.-. .+
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 876 45789999999999998 6777777788899988888765 45889999999999999763211 10
Q ss_pred -HHHHH--cCChHHHHHhhcc--CChhH------HHHHHHHHHHHHHhhchhhHHHHHHHhcCCCc----chHHHHHHHH
Q 000145 552 -ACVES--AGAVPAFLWLLKS--GGPKG------QDASAMALTKLIRAADSATINQLLALLLGDSP----SSKAHVIKVL 616 (2054)
Q Consensus 552 -~~I~e--~GaI~aLV~LLkS--~~~ev------q~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~----~V~~~a~~AL 616 (2054)
+.+.+ .+.-++.++++.+ ++|++ +......+..+.... .+- +.+++ +++++.+. -
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~--------y~~-QQk~p~~~W~~PEqsAg-~ 1969 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKL--------YEQ-QQKDPTVKWNTPEQSAG-T 1969 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHH--------HHH-hccCCcccccCchhhcc-h
Confidence 01111 1222555555543 23332 222222222222110 000 00000 01111000 0
Q ss_pred HHHH-hhhcchHHHHhhhh------------cccchHHHHHHhccCC--HHHHHHHHHHHHHHhhcChhhhhhhhhCCCH
Q 000145 617 GHVL-TMALQEDLVQKGSA------------ANKGLRSLVQVLNSSN--EENQEYAASVLADLFSMRQDICGSLATDEIV 681 (2054)
Q Consensus 617 ~~La-~~~~~~d~~~~~l~------------~~GaI~~LV~LLks~s--~evre~Aa~ALanLas~~~e~r~~Iv~~g~V 681 (2054)
+-.- .+.-..-..+..+. -.+.++.+..++...+ .+.-+.-..++..|....+.....+-.-|-+
T Consensus 1970 ~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGyl 2049 (2235)
T KOG1789|consen 1970 SEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYL 2049 (2235)
T ss_pred hhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccch
Confidence 0000 00000000111111 1234566666665553 3445555667777777788888888888999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHH
Q 000145 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAA 759 (2054)
Q Consensus 682 ~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~ 759 (2054)
|.++..+...+...-..|.+.|+.|+. ++ -....+.....+.+++..++.. ++...-|+.+|-.+.. ..+...
T Consensus 2050 PK~~~Am~~~n~s~P~SaiRVlH~Lse--n~--~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVA 2124 (2235)
T KOG1789|consen 2050 PKFCTAMCLQNTSAPRSAIRVLHELSE--NQ--FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVA 2124 (2235)
T ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHhh--cc--HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999877666667889999999986 33 4555677778888888888764 3445578888888865 234455
Q ss_pred HHHhcCcHHHHHHHHcCC
Q 000145 760 EVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 760 ~Iv~~g~I~~LV~LL~s~ 777 (2054)
...+.|.+|.|.++|...
T Consensus 2125 Q~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2125 QMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccCcHHHHHHHhccc
Confidence 667889999999998653
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00018 Score=93.06 Aligned_cols=434 Identities=15% Similarity=0.136 Sum_probs=258.3
Q ss_pred cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHH
Q 000145 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL 478 (2054)
Q Consensus 399 Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~ 478 (2054)
+++++.. +.--|..++++++...-.+ +..+-+.++++..++.+++.|+.+..++-...++.-+.+ ++.
T Consensus 116 L~s~nq~-vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~ 183 (866)
T KOG1062|consen 116 LNSSNQY-VVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIA 183 (866)
T ss_pred ccCCCee-ehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHH
Confidence 3444332 5566777777776543222 233456678889999999999999998888766654433 566
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc---------------CCHHHHHHHHHHHHHH
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLWIL 543 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s---------------~s~~Vre~AA~aL~nL 543 (2054)
...+|.+.+..|-..++..+..++..+++.-....+ .++.|+..|+. ++|-+|....+.|+-|
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 777888888888888888888888765544333322 55666666542 2678899999999999
Q ss_pred hcCChhHHHHHHHcCChHHHHHhh---ccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLL---KSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LL---kS~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~ 618 (2054)
+.++.+..+.+-+ .+..+..-- ++-...+.+.++.++..+-.... .-++..|-++|.+.+.+++..+...|..
T Consensus 262 Gq~d~daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 262 GQNDADASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred cCCCccHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 8876665555421 111111111 11123456666666555532221 2356777888888888887777766665
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
+... ++..+++ -=.++++.+++.|..+|..|...+..|.. ..+.+. .++.|+.+|...+++.|..
T Consensus 340 ~V~~--d~~avqr------Hr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 340 VVQQ--DPTAVQR------HRSTILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKAD 404 (866)
T ss_pred hhcC--CcHHHHH------HHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHH
Confidence 5432 2222222 13567888999999999999999888875 223222 3577888888888899998
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHH-H-HH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALT-R-VL 774 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV-~-LL 774 (2054)
.+.-+..++..+.+ ..+. .+..+.+.+...-.-|+..+...+..|..+ ++..+..+.. .-..+. . ++
T Consensus 405 ~as~I~~laEkfaP--~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r-Ly~a~~~~~~~ 475 (866)
T KOG1062|consen 405 IASKIAELAEKFAP--DKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR-LYLALSEDTLL 475 (866)
T ss_pred HHHHHHHHHHhcCC--cchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH-HHHHHhhhhhh
Confidence 88888888764433 4444 334455555543333444333333333221 1111111000 000000 0 12
Q ss_pred cCCCHHHHHHHHHHHHHhhh--cCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCc
Q 000145 775 AEGTSEGKKNASRALHQLLK--HFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPP 852 (2054)
Q Consensus 775 ~s~~~evr~~Aa~AL~nL~~--~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~ 852 (2054)
....+.+.+-|.||++..+. -.+.++.-.........+..|..++.+...+..++..|+-||..|...-..+
T Consensus 476 ~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------ 549 (866)
T KOG1062|consen 476 DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------ 549 (866)
T ss_pred hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------
Confidence 22344557789999988661 1111111111223356788888888877777888889999888887421111
Q ss_pred ccccccCCCchHHHH-HhhhcCChhHHHHHHHHH
Q 000145 853 WAALAEVPSSIEPLV-CCLAEGPPPLQDKAIEIL 885 (2054)
Q Consensus 853 ~~~~~~~~~~L~~Lv-~ll~~~~~~vq~~Ai~iL 885 (2054)
.+ -+..|+ ....+-+.++|++|++-=
T Consensus 550 ------~~-ri~~lI~~~~~s~~~elQQRa~E~~ 576 (866)
T KOG1062|consen 550 ------SE-RIKQLISSYKSSLDTELQQRAVEYN 576 (866)
T ss_pred ------HH-HHHHHHHHhcccccHHHHHHHHHHH
Confidence 01 133343 344455667999998743
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.36 E-value=9.7e-05 Score=93.00 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=214.9
Q ss_pred hHHHHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhh-----cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC
Q 000145 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSH-----AEAKKVLIGLITMATADVREYLILSLTKLCRRE 463 (2054)
Q Consensus 390 gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~-----~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s 463 (2054)
.....++.++.....+++.+.+..-+..+.. ++...+.+.+ .+...+++.++...+.-++..++..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456777788777666677777777777643 4444444443 245677888998888889999999999887653
Q ss_pred ccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 464 VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 464 ~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
..........--.+.+...++++ +...+..++.+|..|.. .++.|..+.+.++++.|+.+|+.. +...+-.+.-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33211111111223455566544 45677788899999988 688999999999999999999764 568889999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhc----h---------hhHHHHHHHhcC---
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----S---------ATINQLLALLLG--- 603 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e----~---------~~Ip~Lv~LL~~--- 603 (2054)
+-|+.+.+ ..+...+.+.|+.|+++++.. .+.+.+-+..+|.|+..... . ..++.+++.|..
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998644 445556689999999999864 46788888899999987531 0 123444555543
Q ss_pred CCcchHHHHHHHH-------HHHHh----------------hhc-chHHHHhh---hhcc--cchHHHHHHhc-cCCHHH
Q 000145 604 DSPSSKAHVIKVL-------GHVLT----------------MAL-QEDLVQKG---SAAN--KGLRSLVQVLN-SSNEEN 653 (2054)
Q Consensus 604 ~~~~V~~~a~~AL-------~~La~----------------~~~-~~d~~~~~---l~~~--GaI~~LV~LLk-s~s~ev 653 (2054)
.|+++.......- ..+.. +.. ++.++++- +.+. ..++.|++++. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 3333322211100 01100 001 11222211 2222 33789999995 446777
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
..-|+.=+..++...|..+..+.+-|+=..+++++.+.++++|.+|..|+..|-.
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777777888888788888888888999999999999999999999999998854
No 59
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.33 E-value=5.1e-06 Score=107.56 Aligned_cols=358 Identities=15% Similarity=0.073 Sum_probs=236.1
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhccCCh-h-HHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGP-K-GQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-e-vq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
+++.+.+.....+.+.+....+..+....+. - .-...++.+.|.+.... .+..+.+.++..+...++.......-+
T Consensus 376 y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n~~ 455 (748)
T KOG4151|consen 376 YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLNWG 455 (748)
T ss_pred hhccccchhhhhccccchHHHHHhhhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccccc
Confidence 5555555555556666777777777766554 2 22335666777765421 245566777766554444322111111
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
+.. ...-+.....+..+.++...++.+....+..+ ......+...++.|+...|+++....++..+.
T Consensus 456 ~v~------~~r~rk~~~~~~~~~~~svakt~~~~~~E~~a-------A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl 522 (748)
T KOG4151|consen 456 NVH------MSRARKRLSLDEDPSCESVAKTVSWAKNEYLA-------AKEKYERAKKIKPGGYEALLRLGQQQFEEAKL 522 (748)
T ss_pred hHH------HHHHHHhhccCcchhhhHHHHHHHHHHHHHHh-------hhhHHhcCccccccHHHHHHHHHHHhchHHHH
Confidence 110 00001123444555555555444433333332 23567788899999999999999999999999
Q ss_pred HHHHHHH-HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHH-HHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 698 QSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE-TAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 698 ~AA~AL~-nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre-~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
.+..+|. .+.. + ..+. ..+++++.+.++........ +++.+|.||++ +...|+++.++.+++.+..++
T Consensus 523 ~~~~aL~~~i~f--~---~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~ 593 (748)
T KOG4151|consen 523 KWYHALAGKIDF--P---GERS----YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM 593 (748)
T ss_pred HHHHHHhhhcCC--C---CCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh
Confidence 9999998 3322 2 3332 45888898888876544444 79999999988 556688899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCCccCCcc
Q 000145 775 AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPW 853 (2054)
Q Consensus 775 ~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~ 853 (2054)
.+.++..|+.+.+.+.||.... ..+.+.+.....-.++++.+... ..+....++..+++.++. ..+.|..+.
T Consensus 594 ~ee~~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~--- 666 (748)
T KOG4151|consen 594 TEENPALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRIL--- 666 (748)
T ss_pred hcccHHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHH---
Confidence 9999999999999999999975 44554555534445566666433 445566777777775554 334455432
Q ss_pred cccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHh
Q 000145 854 AALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICA 933 (2054)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~ 933 (2054)
+...|.+.++....++.+.+||+++.+..|+.... ..++..++.++.+++..+-.+.=-..
T Consensus 667 ----~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~---------------~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 667 ----ELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL---------------FEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ----HhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH---------------HHHHHHhccchHHHHHHHHHHhhhhh
Confidence 35569999999999999999999999999966543 57888999999988888877763333
Q ss_pred cccchhhhHHHHhh
Q 000145 934 AKEHKKQSMDALDL 947 (2054)
Q Consensus 934 ~k~~~~~~~~~L~~ 947 (2054)
.|+-+++.+..-..
T Consensus 728 ~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 728 KREDAAPCLSAAEE 741 (748)
T ss_pred hhhhhhhHHHHHHH
Confidence 44444444444333
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.31 E-value=0.00066 Score=85.09 Aligned_cols=271 Identities=14% Similarity=0.106 Sum_probs=177.2
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCCh--hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSE--DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------- 589 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd--~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------- 589 (2054)
..++.+|++..+++|..|+...+.|+.--. .-.+.+...| ..|.+-+....|++.-....++..+.+..
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 345567899999999999998888854100 0012222222 22456667778888887777777766542
Q ss_pred -chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 590 -DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 590 -e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
-.+++|.|...|++..+.+......-++.++...+..-..++.++ .--.|+++|++.+.++|.+|...+..++..
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a- 760 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA- 760 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-
Confidence 256889999999999988888888888888766554333333221 123578889999999999999999988752
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 669 ~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
+--++++..|+.-|+......|...+-+++-.+...-. ..++|.|..=-..+...|+.-.+.++
T Consensus 761 ------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----------fsVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 761 ------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----------FSVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred ------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----------hhhHHHHHhcccCchhHHHHhHHHHH
Confidence 22234555555555554445555445455444331100 12555565555667888999999999
Q ss_pred HHhhCChH--HHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 749 ANLLSDPD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 749 ~NLa~~~e--~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
+.+...-. .++.+- ...|.|.+.|.+.|+--|+.|.-.+.+|.-+.+.- ....+.-+|++++=
T Consensus 825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNllw 889 (975)
T COG5181 825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHhh
Confidence 99975322 222332 25677778899999999999999999998875431 11234556777664
No 61
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.23 E-value=0.00013 Score=90.00 Aligned_cols=250 Identities=25% Similarity=0.257 Sum_probs=187.9
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
..++.+.+.+.+.+..+|..+...++.+.. ..+++.+..+|.+.++.+|..|+.+|+.+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 467788999999989999999999777765 3478999999999999999999999998854
Q ss_pred HHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc------------hHHHHHHHHHHHH
Q 000145 554 VESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS------------SKAHVIKVLGHVL 620 (2054)
Q Consensus 554 I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~------------V~~~a~~AL~~La 620 (2054)
..+++.|+.++. +++..++..++++|+.+.. ...+.+++..+.++... ++..+..+++.
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~---~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~-- 175 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD---ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE-- 175 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH--
Confidence 457899999888 6889999999999999853 35688899988886622 33333333332
Q ss_pred hhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHH
Q 000145 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSA 700 (2054)
Q Consensus 621 ~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA 700 (2054)
+.+...+..+..++++.+..+|..|+.+|..+...+ ..+...+...+.+.+..++..++
T Consensus 176 ------------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 176 ------------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred ------------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 234446788888888888889999999888887632 35567788888888889998888
Q ss_pred HHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 701 ~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
.+|+.+.. . ..+..+...+.+.+..++..+..++..+ ........+...+.+....
T Consensus 235 ~~l~~~~~--~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~ 290 (335)
T COG1413 235 LALGEIGD--E------------EAVDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLLLIDEANA 290 (335)
T ss_pred HHhcccCc--c------------hhHHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHHhhcchhh
Confidence 88877753 1 2567788888888777777666666521 1223455566677777788
Q ss_pred HHHHHHHHHHHhhhc
Q 000145 781 GKKNASRALHQLLKH 795 (2054)
Q Consensus 781 vr~~Aa~AL~nL~~~ 795 (2054)
++..+...+......
T Consensus 291 ~~~~~~~~l~~~~~~ 305 (335)
T COG1413 291 VRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888777664
No 62
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.18 E-value=0.00026 Score=87.50 Aligned_cols=275 Identities=27% Similarity=0.296 Sum_probs=206.9
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
..+..++..+.+.+..++..++..+..+... ..++.+..++.+.++.+|..++.+|+++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 4667788889888888999888886655433 568999999999999999999999888875
Q ss_pred HHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCC----------h--hHHHHH
Q 000145 512 ITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG----------P--KGQDAS 578 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~----------~--evq~~A 578 (2054)
..++++|+.+|. +.+..+|..++++|+.+.. ..++.+++..+++.. + .++..+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 247899999998 5799999999999999864 335778888877755 2 467777
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHH
Q 000145 579 AMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2054)
Q Consensus 579 A~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa 658 (2054)
+.+|..+ .+...++.+..++.+.+..++..+..+|+.+.... ......+...+.+++..+|..++
T Consensus 170 ~~~l~~~---~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGEL---GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHc---CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 7777666 35578899999999999999999888888764221 13467788889999999999999
Q ss_pred HHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH
Q 000145 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738 (2054)
Q Consensus 659 ~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~ 738 (2054)
.+|..+.. ...+..+...+.+++..++..+..++...-. ......+...+.+...
T Consensus 235 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~ 289 (335)
T COG1413 235 LALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGALDL--------------AEAALPLLLLLIDEAN 289 (335)
T ss_pred HHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------------hhhHHHHHHHhhcchh
Confidence 99888765 5667889999999998888777766662211 1245667777888888
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 739 DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 739 ~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
.++..+..++.... .......+.....+++...+..+...+
T Consensus 290 ~~~~~~~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 290 AVRLEAALALGQIG----------QEKAVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hHHHHHHHHHHhhc----------ccchHHHHHHHhcCCchhhHHHHHHHH
Confidence 88888888877554 333444455555556565555554443
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=0.0034 Score=82.45 Aligned_cols=238 Identities=19% Similarity=0.191 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH---HHHHHhhhcCcHHHHHHHHccC-------CHHHHHHHHHH
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKE---ARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAAT 107 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~---ar~~I~~~aGgVp~LV~LLks~-------s~evr~~AA~v 107 (2054)
...+.+|+..|+... ...|..++--+.+++...+. .++.|.+ +=|.+-+-++|+++ ....+.-+..+
T Consensus 4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 456889999998875 35689999999999887763 4456777 67788888999983 46788889999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCH-HHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSEST-DTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 108 L~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~-eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
|..+|.+++....---.+.||.|++++...+. ++...|..+|..++. .+.|++.+++.|+|+.|.+.+..++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-----~~~G~~aLl~~g~v~~L~ei~~~~~-- 153 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-----SPEGAKALLESGAVPALCEIIPNQS-- 153 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-----CcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence 99999987765333334789999999988554 999999999999996 5789999999999999999997643
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHhhCCh----HHHHhhhccCCHHHHHHHHHHHHHHHhhcCCC-cchhccc----
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGV----DIIVGLLSSDNAAAQSNAASLLARLMLAFGDS-IPTVIDS---- 257 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI----~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~-r~~i~~s---- 257 (2054)
...+.++.+|.+++......... .+..++ +.+...........+-..+..|..+....+.. .......
T Consensus 154 --~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 154 --FQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --chHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 35788999999998865421100 111222 33334444444455666777777776433211 1112222
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 258 GAVKALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 258 GaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
.....+..++++......|..+......+..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2334445555554555666666555555443
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.02 E-value=0.00026 Score=86.04 Aligned_cols=275 Identities=17% Similarity=0.147 Sum_probs=189.1
Q ss_pred hhhhccccHHHHHhhhcCCChh--hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHh
Q 000145 468 EAIGKREGIQLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILC 544 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~--Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa 544 (2054)
+.|...||+..|++++..++.+ +|..+...|-.+.. .+|+..+...| +..++.+-+.. .++.++..+++|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4566679999999999988765 58899999988875 67888888776 55555555443 6788999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~ 624 (2054)
.|+++...-++..|++.+++--.+..+|.+.++++-+|+|+.-+. ..
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---------------~~------------------ 297 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---------------GQ------------------ 297 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---------------hh------------------
Confidence 999988888888999999998888889999999999999996441 11
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
..++.+.+..+-++|..+..+.++-+|.+|+-+.+-|+. +.+.-..+.+.|.+...-.++.+-+|.-- ++--.
T Consensus 298 ---a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~h 370 (832)
T KOG3678|consen 298 ---AVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRF---ARDAH 370 (832)
T ss_pred ---HHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchh---hhhhh
Confidence 122334445567888888888888999999999999988 67777777777765444444443333200 01001
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh--HHH-HHHHhcCcHHHHHHHHcCCCHHH
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP--DIA-AEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~--e~r-~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
.-+.+ ...+.+..|+-+|.+..-+.+.-++.-|+.=+.-. ... +-+-+-|+|..|-++..+.+..-
T Consensus 371 d~aQG-----------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~va 439 (832)
T KOG3678|consen 371 DYAQG-----------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVA 439 (832)
T ss_pred hhhcc-----------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHH
Confidence 11111 11336777888888765554443333333222211 111 22345578888888888777766
Q ss_pred HHHHHHHHHHhhhcC
Q 000145 782 KKNASRALHQLLKHF 796 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~ 796 (2054)
...|.++|.-++..-
T Consensus 440 akfAseALtviGEEV 454 (832)
T KOG3678|consen 440 AKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHhcccc
Confidence 777888887776543
No 65
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00019 Score=86.87 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
-++.+..-|-.+..+-++...+...||..+++..+.+++..++..|+..++..+.+++..+..+.+.|+.+.|+..+.++
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 55666666777778888999999999999999999999999999999999999999999999999999999999988855
Q ss_pred C-hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc--CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 487 S-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 487 d-~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s--~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
+ ..++..|+.+++.|-++.+.....+...+|+..|...|.+ .+...+..++..+.+|.......+..+...+....+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 4577999999999999888888888899999999999998 478889999999999988655556666666777777
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHh
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
..+..+.+.++++++..++..+...
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHH
Confidence 7788888888998888887766543
No 66
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.001 Score=83.35 Aligned_cols=350 Identities=16% Similarity=0.184 Sum_probs=221.1
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--- 589 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--- 589 (2054)
.-.+.++|.+..+.+.+..+|-.|++.|+|++.-... ....--......++++..+.+..++. ++..|-.+..+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999762110 00111123445566676777766653 445555555442
Q ss_pred -c-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 -D-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 -e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
. .+.+|-|-+-+..-++..+.....=+..+-. .+.-++.. --....+.|..++.++++++|..+-.++.+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~---yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMIS---YLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHh---cchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1 2344555555556677777766555554422 12222211 223457788899999999999888777666
Q ss_pred HhhcChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH-HHH
Q 000145 664 LFSMRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAA 741 (2054)
Q Consensus 664 Las~~~e~r~~I-v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~-~Vr 741 (2054)
+... -...... --...++.++.-+++.++.++..|..-+..+....+. ..-..-.|+...++.++.+... .++
T Consensus 235 fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~----~~l~~~s~il~~iLpc~s~~e~~~i~ 309 (675)
T KOG0212|consen 235 FLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR----DLLLYLSGILTAILPCLSDTEEMSIK 309 (675)
T ss_pred HHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc----chhhhhhhhhhhcccCCCCCccccHH
Confidence 6431 1111111 2246678888889999999999998888777752211 1122345566666666666554 344
Q ss_pred HHHHHH---HHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHh
Q 000145 742 ETAVAA---LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDS 818 (2054)
Q Consensus 742 e~Al~A---L~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~L 818 (2054)
+.+... |..+.+.+....++--...+..+.+++.++..+.|-.+..-+..|-...|. +.+. ......+-|+..
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~---h~~~if~tLL~t 385 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLV---HNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhh---hccHHHHHHHHh
Confidence 443332 223333333333333334678888999999999999999888888876653 1111 014456667777
Q ss_pred hccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 819 LNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 819 L~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
|.+.++. ....++..++.++.+.+..... ..+..|.++...+...++.+|.-|+.++|-
T Consensus 386 Lsd~sd~--vvl~~L~lla~i~~s~~~~~~~-----------~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDE--VVLLALSLLASICSSSNSPNLR-----------KFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhH--HHHHHHHHHHHHhcCcccccHH-----------HHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 7654443 4888999999998765544222 257888898999888999999999888876
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0085 Score=78.27 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=121.6
Q ss_pred hHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh--hchh-hHHH
Q 000145 520 PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSA-TINQ 596 (2054)
Q Consensus 520 ~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~--~e~~-~Ip~ 596 (2054)
.++++|+++|..+|+.|.+.+..|... ..++.+ +..|+..|.+.+++.+...+.-+..++.. ++.. -+..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNE-SNVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 456677777888888888777777642 233333 34566667666777777777776666644 2211 2445
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhh---cchHHHHhhhhcccchHHHHH--HhccCCHHHHHHHHHHHHHHhhc----
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMA---LQEDLVQKGSAANKGLRSLVQ--VLNSSNEENQEYAASVLADLFSM---- 667 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~---~~~d~~~~~l~~~GaI~~LV~--LLks~s~evre~Aa~ALanLas~---- 667 (2054)
+.+.++....-|+..+...+-.+.... .+.+.+.+. ...+.. ++.-+.+.....+.|++..-...
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rL------y~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~ 500 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRL------YLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDG 500 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHH------HHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence 555555444444443333333332221 111111111 111111 12223556678888988876521
Q ss_pred -ChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh-hhhcCCHHHHHH
Q 000145 668 -RQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAET 743 (2054)
Q Consensus 668 -~~e~r~~Iv~~g~V~~Lv~LL~d--gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~-LL~s~d~~Vre~ 743 (2054)
+.+....+.+..++..+.+++.. .+..++..|..||.+|+...+. .. .-++.|+. +..+.+.++|..
T Consensus 501 ~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s-~~--------~ri~~lI~~~~~s~~~elQQR 571 (866)
T KOG1062|consen 501 ANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS-SS--------ERIKQLISSYKSSLDTELQQR 571 (866)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc-cH--------HHHHHHHHHhcccccHHHHHH
Confidence 22223344556788888888864 4578899999999999873332 01 12333443 344567888888
Q ss_pred HHHHHHHhhCChHHHHHHH
Q 000145 744 AVAALANLLSDPDIAAEVL 762 (2054)
Q Consensus 744 Al~AL~NLa~~~e~r~~Iv 762 (2054)
|..-=.-+..+...+..|.
T Consensus 572 a~E~~~l~~~~~~lr~siL 590 (866)
T KOG1062|consen 572 AVEYNALFAKDKHLRKSIL 590 (866)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7775554444555555544
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.89 E-value=0.00039 Score=85.41 Aligned_cols=191 Identities=19% Similarity=0.239 Sum_probs=137.5
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCCCcc
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
...+++.++.++|.-++..++..|..+....+...... ..+.++.+++.+++ .+...+..++++|.++.+ ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~- 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK- 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc-
Confidence 57888888999999999999999999987544333332 25667888887765 334566889999999997 33
Q ss_pred cchhHHHHhcCChhhHHhhh-----hc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHH
Q 000145 714 TTNKMSYIAEGDVKPLIKLA-----KT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNA 785 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL-----~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~A 785 (2054)
..|..+.+.++++.|..++ .+ .+..++-+++.+++.|+-+++....+.+.+.++.|+++++.. .+++-+-+
T Consensus 182 -~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 182 -EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp -HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred -hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 7999999999999999999 33 345556689999999999999999999999999999998866 68899999
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
..++.|+....+ +.+...+..+ .+.++++.|...+.......+-+..|
T Consensus 261 la~l~Nl~~~~~--~~~~~~mv~~-~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 261 LAILRNLLSKAP--KSNIELMVLC-GLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHTTSSSS--TTHHHHHHHH--HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccH--HHHHHHHHHc-cHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998753 2244444433 56667777776676655555555544
No 69
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.87 E-value=0.00088 Score=82.36 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=145.9
Q ss_pred CchHhhhhhc--CCHHHHHHHHHHHHHHhcCChhHHHHHHH------cCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 518 IPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVES------AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 518 Ip~LV~LL~s--~s~~Vre~AA~aL~nLa~~sd~~r~~I~e------~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
...++.+|+. +++++.......+..+..+++...+.+.+ .....+++.++.+++.-++..++..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5566666653 57888888888888887766554444433 124666677777777777777777777665432
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc----CCHHHHHHHHHHHHHHh
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS----SNEENQEYAASVLADLF 665 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks----~s~evre~Aa~ALanLa 665 (2054)
. ...... ..+.++.+++++++ ++.+.+..++.+|.+|.
T Consensus 137 ~---------------~~~~~~-----------------------~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 137 P---------------KRSEKL-----------------------VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp T---------------T--HHH-----------------------HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred C---------------ccccch-----------------------HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 1 000000 01235555555544 45667799999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHh-----ccC--CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CC
Q 000145 666 SMRQDICGSLATDEIVNPCMRLL-----TSN--TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL-----~dg--s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d 737 (2054)
. .++.|..+++.++++.+..++ .++ +...+-++..++.-|+. .+ .....+...+.++.|+++++. ..
T Consensus 179 ~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF--~~--~~~~~~~~~~~i~~L~~i~~~~~K 253 (312)
T PF03224_consen 179 R-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF--EP--EIAEELNKKYLIPLLADILKDSIK 253 (312)
T ss_dssp T-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT--SH--HHHHHHHTTSHHHHHHHHHHH--S
T ss_pred C-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc--CH--HHHHHHhccchHHHHHHHHHhccc
Confidence 8 899999999999999999999 233 33566778999988875 43 566678888899999999987 56
Q ss_pred HHHHHHHHHHHHHhhCChH--HHHHHHhcCcHHHHHHHHcCC--CHHHHHHH
Q 000145 738 IDAAETAVAALANLLSDPD--IAAEVLLEDVVSALTRVLAEG--TSEGKKNA 785 (2054)
Q Consensus 738 ~~Vre~Al~AL~NLa~~~e--~r~~Iv~~g~I~~LV~LL~s~--~~evr~~A 785 (2054)
+.+..-++.+|.||...+. ....++..|+++.+..+.... |+++.+--
T Consensus 254 EKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 254 EKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 7888889999999998554 777788877777766665543 66666543
No 70
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.81 E-value=0.048 Score=69.23 Aligned_cols=330 Identities=14% Similarity=0.099 Sum_probs=191.1
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhccc--CccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhh
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRR--EVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~--s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.+..++.++++.+++++..|+.....++.- ....-..+...|. .|.+-+....+++--..+.+++.+.....-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 355667789999999999999776665432 0111122222222 355566677777776666776666542111111
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
..--.|.+|.|.-+|++...+++.+....++.++..+++ .|+.+. .---|+++|++.+.+++++|..+++-++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 112357899999999999999999999999999876654 233332 22347788999999999999999999986
Q ss_pred hhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 588 AAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 588 ~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
..- ..++..|+.-|+..+.+.+.-..-+++..+ +...--.+++.|..=-.+++..++.....+++.++.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVA----------EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhH----------hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 632 234444444444333322222222222221 111111235555555556678889988888888876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc----CCHHHHH
Q 000145 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAE 742 (2054)
Q Consensus 667 ~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s----~d~~Vre 742 (2054)
. -.....-.-..+.|-|-..|.+.++.-|.-|+..+.+|+-..+. ....++.-.|+++|-. .++.+..
T Consensus 830 y-ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g-------tg~eda~IHLlNllwpNIle~sPhvi~ 901 (975)
T COG5181 830 Y-IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG-------TGDEDAAIHLLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred H-HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHhhhhccCCCcHHHH
Confidence 2 11111111123445556677788888888899999999873222 1122233345555432 4566655
Q ss_pred H---HHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 743 T---AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 743 ~---Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
. ++..+.+..+... ...-+.+-|++.+..+|. +-|...|....
T Consensus 902 ~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 902 SFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHH-HHHHHHhhhhh
Confidence 3 4444444332111 122333445566666664 56666666554
No 71
>PRK14707 hypothetical protein; Provisional
Probab=97.80 E-value=0.6 Score=66.97 Aligned_cols=983 Identities=16% Similarity=0.097 Sum_probs=453.7
Q ss_pred CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH
Q 000145 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL 131 (2054)
Q Consensus 54 s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks--~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV 131 (2054)
+....+++...+.......+..++.+. ..-|..++..+.. ++.+++..+..+-..++.++..+..+ ...+|..++
T Consensus 135 ~~~~c~~a~a~i~~~~~~~~~~~~~l~--~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~l 211 (2710)
T PRK14707 135 DSGRCERAVARLARHLRREDKARQTLN--AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVL 211 (2710)
T ss_pred CchHHHHHHHHHHHHhccccchhhhhc--cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHH
Confidence 334456666666666655555555342 2356777777654 47778877777778888877666555 456778888
Q ss_pred Hhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchh
Q 000145 132 SLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYW 209 (2054)
Q Consensus 132 ~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~ 209 (2054)
..++. ++++.+..+...-..++. +..-+..|-.+ +|...++.|..=. +...++.+..+|..=...+.+..
T Consensus 212 Na~sKWp~~~~c~~aa~~la~~l~~-----~~~l~~~~~~q-~va~~lN~lsKwp--~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 212 NALCKWPDTPDCGNAVSALAERLAD-----ESRLRNELKPQ-ELGNALNALSKWA--DTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHhcCCCChhHHHHHHHHHHHHcC-----cHHHHHhCChH-HHHHHHHHHhcCC--CchHHHHHHHHHHHHHhhhHHHH
Confidence 88877 577777666655566664 32234444333 4444445443222 22356666666654443332221
Q ss_pred HHHHhhCChHHHHhhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHh
Q 000145 210 RATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALS 287 (2054)
Q Consensus 210 ~aI~eaGGI~~LV~LL~s-~s-~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs 287 (2054)
+.+ ..-.+...+.-|+. ++ ..++..+..+-..|. .+++.++.+ +.-.+...++.|.+=.+..+...++..|..-.
T Consensus 284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~-~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLA-DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh-ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 222 12223333333332 33 345555555555555 344444333 33445566666654445455555555554433
Q ss_pred hccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchhH--------HHHhhhhcCCCCch
Q 000145 288 SKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPAL--------VVYLGELSQSPRLA 358 (2054)
Q Consensus 288 ~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~l--------I~~L~elL~s~~~~ 358 (2054)
...++.|+.+- ..|+...++.+.. |.+. ....+..+|+.-..+.+.+ +.....-+..=+..
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~---------~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~ 430 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTP---------VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDL 430 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCch---------HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcc
Confidence 33477776654 5566666666654 3222 2334555554422222221 11111111111111
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH-HhhcChhhhHHHhhcchHHHH
Q 000145 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA-SLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 359 ~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~-~L~~n~~~~~~L~~~g~I~~L 437 (2054)
..+......++..+.+ +......+...++...|-.+-|=++.+ +-..++..|. .+..+.++.+.+.-.+....|
T Consensus 431 ~~C~~aa~~lA~~la~----d~~l~~~~~p~~va~~LnalSKWPd~p-~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L 505 (2710)
T PRK14707 431 PICGQAVSALAGRLAH----DTELCKALDPINVTQALDALSKWPDTP-ICGQTASALAARLAHERRLRKALKPQEVVIAL 505 (2710)
T ss_pred hhHHHHHHHHHHHHhc----cHHHHhhcChHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhcccHHHHhhcCHHHHHHHH
Confidence 2222222223222211 223344566667777777777777665 4445555554 455666666666555666666
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCC
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG 517 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa 517 (2054)
-.|-+-.+......++..|..-..........+...+....+-.+-+.++....+.++..|..+....+..+.. .....
T Consensus 506 ~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~ 584 (2710)
T PRK14707 506 HSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQG 584 (2710)
T ss_pred HHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhH
Confidence 66666666554444444443222221222233222222233333445555566666666666654433333322 23445
Q ss_pred CchHhhhhhc-CC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH-hhccCChhHHHHHHHHHHHH-HHhh----
Q 000145 518 IPPLVQLLEA-GS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKL-IRAA---- 589 (2054)
Q Consensus 518 Ip~LV~LL~s-~s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~-LLkS~~~evq~~AA~AL~nL-s~~~---- 589 (2054)
+..+++.|.. ++ ...+..+.+.-..+.. .+..+..+. ...+..+++ +-|-++....+.++..|..- ....
T Consensus 585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~-~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~ 662 (2710)
T PRK14707 585 VVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD-PVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRK 662 (2710)
T ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHh
Confidence 5666665543 33 4444444444444443 344333332 223333333 33444445555555554432 2111
Q ss_pred --chhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHh
Q 000145 590 --DSATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 590 --e~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLa 665 (2054)
+..-+.-++.-| +-.+.+....+..+|+.. +...+... ..+ ....+.-+++-+ |=++...-..++..|+.-.
T Consensus 663 ~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~r--La~~~~Lr-~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL 738 (2710)
T PRK14707 663 TFNSLDVANALNALSKWPDTPVCAAAAGGMAER--LAADPGLR-KEL-NPVDVANALNALSKWPRTPVCAAVASALAARV 738 (2710)
T ss_pred hcchHHHHHHHHhhhcCCCchHHHHHHHHHHHH--HhcChhhH-hhc-CHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Confidence 111122222222 222333344444444322 12222221 111 222334444433 3344444444444554444
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-HhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAET 743 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~-nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~ 743 (2054)
...+..+..+-..++-..|-.+-+=.+...-..|+.+|. .+.. .. ..+..+. ..-+...++-|.. ++.+....
T Consensus 739 ~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~--~Lr~aL~-pQ~vAn~LNALSKWPe~~~Cr~ 813 (2710)
T PRK14707 739 VAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLR--EP--DVRDVLK-PREMTNALNALSKWPDTPACAA 813 (2710)
T ss_pred hcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--Cc--chhhhcC-HHHHHHHHHHhhcCCCchHHHH
Confidence 435555554444444344333333333333444555554 3332 11 2332111 1122223333332 33333333
Q ss_pred HHHHH-HHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccC
Q 000145 744 AVAAL-ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2054)
Q Consensus 744 Al~AL-~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg 822 (2054)
|+.+| ..+..++..+..+-.++.-..|-.+-+=.+....+.|+.+|..-.... ...+..+...+....|=.+.+=.
T Consensus 814 AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e---~~LR~aL~~QevantLNALSKWP 890 (2710)
T PRK14707 814 AASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE---PELRHTLTAHGVVIVLNALSKWP 890 (2710)
T ss_pred HHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC---hhhhhccchHHHHHHHhhhccCC
Confidence 44444 445567777766544444444434444456667777777777644433 22333332222222222222211
Q ss_pred CCCchhHHHHHHHHHH-HhhcccCCCccCCcccccccCCCchHHH-HHhhhcCChhHHHHHHHHHHHhhccCCc------
Q 000145 823 DMNGTDVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPL-VCCLAEGPPPLQDKAIEILSRLCGDQPA------ 894 (2054)
Q Consensus 823 ~~~~~~~~~AL~ALa~-La~~~~~~~~i~~~~~~~~~~~~~L~~L-v~ll~~~~~~vq~~Ai~iL~~L~~~~~~------ 894 (2054)
+ ...-..|..+|+. |.......... .++.+... -.+...+.......|+..|..-+...+.
T Consensus 891 d--~~~C~~AA~aLA~rL~~d~~Lrqal---------~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln 959 (2710)
T PRK14707 891 N--VPVCAAAASALAERLADEPELRKAL---------SAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALD 959 (2710)
T ss_pred C--cHHHHHHHHHHHHHHhcCHHHHhhc---------cHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhcc
Confidence 2 2223444444442 22111111111 11122222 2222234444445555555554443321
Q ss_pred --hhhhhhhccccc---------HHHHHHHHhcccCce--eehhhhHHHH-----HhcccchhhhHHHH-----hh----
Q 000145 895 --VLGDFLMARSSS---------IGALADRIMHSSSLE--VRVGGAALLI-----CAAKEHKKQSMDAL-----DL---- 947 (2054)
Q Consensus 895 --~~~~~~~~~~~~---------i~~La~~il~s~~~e--v~~~~~~~~i-----~~~k~~~~~~~~~L-----~~---- 947 (2054)
-+...++.=||| ...|+.+|.....+. .---+....+ --+...|.+++..| +.
T Consensus 960 ~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~ 1039 (2710)
T PRK14707 960 ASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLC 1039 (2710)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhh
Confidence 223333444444 223444443222111 0000111111 00222333333333 00
Q ss_pred cCCcHHHHHHHH-HHhhhccCCCCCCcccccCCCccccccccccCC----------------------CCcCCCCCcchh
Q 000145 948 SGYLKPLIYALV-DMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD----------------------FDVPDPATILGG 1004 (2054)
Q Consensus 948 ~g~~~~~i~~Lv-~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 1004 (2054)
-.+-...+.+.+ .+|| =|| ...+|.+...+.. -+-.=|+.+-..
T Consensus 1040 ~amdaQ~lan~LNALSK------WPd-------e~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr 1106 (2710)
T PRK14707 1040 KALSSQGLTTVLNALCK------WPE-------MPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCA 1106 (2710)
T ss_pred hhcchHHHHHHHHhhcc------CCC-------chhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHH
Confidence 112222222222 2222 244 1113333311111 111128999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccccchhHHHHHHHHHHccCcccc------------
Q 000145 1005 TVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV------------ 1072 (2054)
Q Consensus 1005 ~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~~~~~~~~~~ll~~lf~~~~~~------------ 1072 (2054)
..++.|..+|++ +....--|.+-++-.+..-|+++ |+++.-.. -.-.|-+-|-.|++++
T Consensus 1107 ~Aa~~LA~rL~~--~~~l~~~fd~q~vA~~LNALSKW---p~~~~cr~----Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~L 1177 (2710)
T PRK14707 1107 AAASALAKRLTD--DAGLRHVFDPINVSQALNALSKW---PGTQACES----AIDVLAATLANAPGLRNALSAQGVAIAL 1177 (2710)
T ss_pred HHHHHHHHHhcc--ccchhccCCHHHHHHHHHHHhcC---CCchHHHH----HHHHHHHHhccchhhhhhcCHHHHHHHH
Confidence 999999999964 44555567777776666667544 44333333 1334445667777774
Q ss_pred -------cchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCcc
Q 000145 1073 -------LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKG 1113 (2054)
Q Consensus 1073 -------~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~ 1113 (2054)
+.|+.++++-.|+..|-+++.-=|-|..+.||.+-=-=+|+
T Consensus 1178 NaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sRl 1225 (2710)
T PRK14707 1178 NALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSRL 1225 (2710)
T ss_pred HHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999988754333443
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=97.78 E-value=0.0046 Score=81.28 Aligned_cols=433 Identities=16% Similarity=0.177 Sum_probs=242.7
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChh---hhhhhhhCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSN-------TQMVATQSARALGALS 707 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e---~r~~Iv~~g~V~~Lv~LL~dg-------s~~vr~~AA~AL~nLs 707 (2054)
.++..+.+|++.+++-|-.+...+.+++..++. .++.+.+.=+.+-+-++|+++ ....+.-|...|+.++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467778889988888888888888888875442 344577777788899999873 2355666777788887
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~-~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa 786 (2054)
. ++ +....-.-.+-||.|++.+...+. .+...|..+|..++.+|+.++.+.+.|+++.|.+.+.+ ++..++.|.
T Consensus 86 ~--~~--~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 R--DP--ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred C--Ch--hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 6 33 222211223478999999988776 89999999999999999999999999999999998877 778899999
Q ss_pred HHHHHhhhcCCCchhHhhhhhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHH
Q 000145 787 RALHQLLKHFPVGDVLKGNAQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2054)
Q Consensus 787 ~AL~nL~~~~~~~e~i~~~i~~-~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2054)
.++.+++..... +...+.... ...+..+-......+ ...+.+.+..|+.+-...+.. + ......+.|+..
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~-----~-~~~~~~~~W~~~ 231 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPIL-----P-LESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCcc-----c-cccCChhhhHHH
Confidence 999999886431 111111111 233444444444333 334777777777766443111 0 011124567776
Q ss_pred HHHh----hhcCC-hhHHHHHHHHHHHhhccCCc--hhhhhhhcccccHHH-----------HHHHHhcccCceeehhhh
Q 000145 866 LVCC----LAEGP-PPLQDKAIEILSRLCGDQPA--VLGDFLMARSSSIGA-----------LADRIMHSSSLEVRVGGA 927 (2054)
Q Consensus 866 Lv~l----l~~~~-~~vq~~Ai~iL~~L~~~~~~--~~~~~~~~~~~~i~~-----------La~~il~s~~~ev~~~~~ 927 (2054)
+... +.++- +..|..|+...+.++..... .+.+...+.+++..- .+..++++...+.... +
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~-~ 310 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPE-K 310 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHH-H
Confidence 6443 33333 44688888777777765422 222222233333322 2223333333333222 2
Q ss_pred HHHHHhcccchhhhHHHH-----------------hhcCCcHHHHHHHHHHhhhccCCCC--CC-----cccccC----C
Q 000145 928 ALLICAAKEHKKQSMDAL-----------------DLSGYLKPLIYALVDMMKQNSSCSS--LD-----IEVRTP----R 979 (2054)
Q Consensus 928 ~~~i~~~k~~~~~~~~~L-----------------~~~g~~~~~i~~Lv~l~~~~~~~~~--~d-----~~~~~~----~ 979 (2054)
...+++...-=...|.-| +..+.+..-+...+++.++..-... |+ +|+-.. .
T Consensus 311 ~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe 390 (543)
T PF05536_consen 311 QRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC
Confidence 222211111111111111 2222333333333444444333222 21 222000 0
Q ss_pred Cccccccc----cccCC-----CCcCCCCCcchhhHHHHH---HHHHhccCCCCcchhhhccchHHHHHHhhcc--CCCC
Q 000145 980 GYMERTAF----QEADD-----FDVPDPATILGGTVALWL---LLIISSFLRNNNVTVMEAGALEALSDKLASY--TSNP 1045 (2054)
Q Consensus 980 ~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~a~~l---l~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~--~~~~ 1045 (2054)
-+.-|+.. |-+.+ +....|.+-++...--|| |+.|......-|+.+ .-|+..+|.++|... ...+
T Consensus 391 ~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~-~~~g~~~l~~~l~~~~~~~~~ 469 (543)
T PF05536_consen 391 TSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILL-SNGGWKLLCDDLLKILQSPSG 469 (543)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHH-hCCcHHHHHHHHHHHHHhccc
Confidence 00012222 11111 111113222233333343 456666666666554 469999999998665 2234
Q ss_pred cccccccchhHH---HHHHHHHHccCccc-ccchhhhc-cHHHHHH
Q 000145 1046 QAEFEDTEGIWI---SALFLAILFQDANI-VLSPATMR-IIPALAL 1086 (2054)
Q Consensus 1046 q~~~~~~~~~~~---~~~ll~~lf~~~~~-~~~~~~~~-~~~~l~~ 1086 (2054)
.++.++..+.|+ |..||-++-..|+. ++.++++. -++.|+.
T Consensus 470 ~~~~~~~~~~~l~~~c~illNl~~~e~~~~~~~~~~f~~ll~~l~~ 515 (543)
T PF05536_consen 470 DDDAEDSAEMALVTACGILLNLVVTEPKMDVEEEATFIELLKALLQ 515 (543)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 555555655676 78899999999998 66555554 3455554
No 73
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=0.026 Score=75.92 Aligned_cols=571 Identities=15% Similarity=0.100 Sum_probs=316.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~-ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
+..++.-++..+..-+.+..+-+.++..- .+.+. ....+|.+-+.+ ++..++...++.-+.++..... -
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~ 153 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------G 153 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------c
Confidence 44455555555555666666666665421 11211 234567777777 6666788888888888775311 1
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCC-HHHHHHHHHHHHHH
Q 000145 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN-AAAQSNAASLLARL 243 (2054)
Q Consensus 165 e~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s-~evq~~A~~aL~nL 243 (2054)
..+ ..-..+.+-.+. .. ++..++++++..+...+........ .. -.-.++..+.... -..+..++.++...
T Consensus 154 ~~~-~~~ll~~le~l~-~~--eet~vr~k~ve~l~~v~~~~~~~~~---~~-~lv~l~~~l~~~d~~~sr~sacglf~~~ 225 (759)
T KOG0211|consen 154 PEY-AHMLLPPLELLA-TV--EETGVREKAVESLLKVAVGLPKEKL---RE-HLVPLLKRLATGDWFQSRLSACGLFGKL 225 (759)
T ss_pred hhH-HHHhhHHHHhhh-HH--HHHHHHHHHHHHHHHHHHhcChHHH---HH-HHHHHHHHccchhhhhcchhhhhhhHHh
Confidence 111 111222222222 21 2345677888887777665543311 00 1112222222221 12455566666655
Q ss_pred HhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000145 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2054)
Q Consensus 244 s~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~ 323 (2054)
.-..++ ..++. -+..+..-+.++.+..+|..++.-+.+++.. ..+.....+.++.++++..+...
T Consensus 226 ~~~~~~---~~vk~-elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddqd-------- 290 (759)
T KOG0211|consen 226 YVSLPD---DAVKR-ELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQD-------- 290 (759)
T ss_pred ccCCCh---HHHHH-HHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchh--------
Confidence 522111 11111 1233333343456677888888877777664 22256667778888887776442
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000145 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2054)
Q Consensus 324 ~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~ 403 (2054)
.+++.|..++.++.+ ++..+. ...+ ...+.++...+...
T Consensus 291 -sVr~~a~~~~~~l~~-----------l~~~~~----------------------------d~~~-~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 291 -SVREAAVESLVSLLD-----------LLDDDD----------------------------DVVK-SLTESLVQAVEDGS 329 (759)
T ss_pred -hHHHHHHHHHHHHHH-----------hcCCch----------------------------hhhh-hhhHHHHHHhcChh
Confidence 266777777666543 111110 0000 12234444444433
Q ss_pred hhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhccc-CccchhhhhccccHHHHHhh
Q 000145 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 404 ~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~-s~e~r~~Ive~ggIp~LV~L 482 (2054)
- .++.........++.. +........-+++...+++....+.+...+.-...++.. +.+....+.....+|.+..+
T Consensus 330 ~-~v~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 330 W-RVSYMVADKFSELSSA--VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred H-HHHHHHhhhhhhHHHH--hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 2 2333333333333221 111112223456667777776677776666666666543 22344555555667888888
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHH
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~a 562 (2054)
..+.+..++...+.....+..-.+..+ - -.--.|.+...+++..+.++.+..+.+..+-..++..........-++.
T Consensus 407 v~d~~~~vr~a~a~~~~~~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~ 483 (759)
T KOG0211|consen 407 VLDNALHVRSALASVITGLSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA 483 (759)
T ss_pred HhcccchHHHHHhccccccCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh
Confidence 888888888877777666543222100 0 0123445555667778999999888777775555555445556777888
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhhchh-hHHHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRAADSA-TINQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~~e~~-~Ip~Lv~L----L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
+..+..+...+++....+.+..++.....+ ..+.+..+ +.+...+++..+...+..+......... ...
T Consensus 484 i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~------~~~ 557 (759)
T KOG0211|consen 484 IVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA------RLE 557 (759)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh------HHH
Confidence 888877766667766666666666553322 12223333 3334445666666666655433222211 122
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
.++.+..+...++...|...+.++..++. -.-..+.....++.+..+..|..+.+|.++|..|..+......
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----- 629 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----- 629 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----
Confidence 36666666666667777777777665543 2234455667889999999999999999999999998762222
Q ss_pred HHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
...+..+.+.+..+-.+.+.+++-.|.-+++.+
T Consensus 630 -~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 630 -SVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred -HHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 233444555566666778888888777666655
No 74
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.036 Score=72.32 Aligned_cols=334 Identities=17% Similarity=0.142 Sum_probs=191.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc
Q 000145 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2054)
Q Consensus 91 ~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a 170 (2054)
+-|+++++.+|.-|+++|..+- ..++.-=.+-.+-++..+.++.||..|+.++-.|-+-+. .-+..
T Consensus 115 k~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~----e~k~q---- 180 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP----EQKDQ---- 180 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh----hhHHH----
Confidence 3566677777777777777651 111110011122244556789999999999999987532 22223
Q ss_pred CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh---hc
Q 000145 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML---AF 247 (2054)
Q Consensus 171 G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~---~~ 247 (2054)
.+..+-.+|.+.+ +-|...|..++..+|-+.- . + -++--..+|.+|.+.++=-|...+..|.+-+. .+
T Consensus 181 -L~e~I~~LLaD~s---plVvgsAv~AF~evCPerl---d-L-IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 181 -LEEVIKKLLADRS---PLVVGSAVMAFEEVCPERL---D-L-IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred -HHHHHHHHhcCCC---CcchhHHHHHHHHhchhHH---H-H-hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 3334445565544 4578899999999987541 1 1 12346778888877665556666666665552 11
Q ss_pred CCC---------------------cchhcccchHHHHHH----HhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCC
Q 000145 248 GDS---------------------IPTVIDSGAVKALVQ----LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG 302 (2054)
Q Consensus 248 ~~~---------------------r~~i~~sGaL~~LL~----LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eagg 302 (2054)
|.. +..+...--+..|++ +++ +.+..+...++.+...++-.+ +.. +.
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~~-~~~------~i 323 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPKN-QVT------KI 323 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCHH-HHH------HH
Confidence 110 011111112222332 222 355567777777777777642 222 22
Q ss_pred HHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCC
Q 000145 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD 382 (2054)
Q Consensus 303 L~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~ 382 (2054)
...|+.+|.++.. +|.-.+++++.++...
T Consensus 324 ~kaLvrLLrs~~~----------vqyvvL~nIa~~s~~~----------------------------------------- 352 (968)
T KOG1060|consen 324 AKALVRLLRSNRE----------VQYVVLQNIATISIKR----------------------------------------- 352 (968)
T ss_pred HHHHHHHHhcCCc----------chhhhHHHHHHHHhcc-----------------------------------------
Confidence 4566676665441 3333444444433211
Q ss_pred CcccchhhHHHHHHHH-cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 383 DEPFDARQIEDILVML-LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 383 ~~~~~~~gIe~~Lv~L-Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
+.-.++++... +.+.|+..++.+=+..|.+|.....+..-+. -+...+.+.+.++-..++.+++..+.
T Consensus 353 -----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILr------E~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 353 -----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILR------ELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred -----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHH------HHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 12233555544 3445566678888888888866554443332 24445666676666677788887776
Q ss_pred cCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc
Q 000145 462 REVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 462 ~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s 527 (2054)
..... ...++..|++++++.+..+...++..+..|...++.... ..+..|.+++.+
T Consensus 422 ~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldt 477 (968)
T KOG1060|consen 422 RIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDT 477 (968)
T ss_pred hhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhh
Confidence 53222 234677899999999999999999999999875443221 134456666633
No 75
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0015 Score=76.12 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=161.6
Q ss_pred HHHHhhhcCCChh--hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 477 QLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 477 p~LV~LL~s~d~~--Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
..+.+.|...+.. -+-.|+..|+++... . .+..+.+...+++...+...+..|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~--~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP--A---------AIKAITKAFIDDSALLKHELAYVLGQMQD--------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh--H---------HHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence 3344444443322 344566666666541 1 13333333333344445555555555532
Q ss_pred HHcCChHHHHHhhcc--CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH-----
Q 000145 555 ESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED----- 627 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS--~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d----- 627 (2054)
..+++.|+..+.+ ..|.+|..|+.+|+.+. .....+.+.+..++...+|++-+..|+..+--......
T Consensus 66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~---~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG---DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred --chhhHHHHHHhcccccchHHHHHHHHHHHhhc---chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccC
Confidence 5688888887765 45778889999999887 33566777777766667777766666655421100000
Q ss_pred HHHhh---h-hcccchHHHHHHhccCCH--HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000145 628 LVQKG---S-AANKGLRSLVQVLNSSNE--ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2054)
Q Consensus 628 ~~~~~---l-~~~GaI~~LV~LLks~s~--evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~ 701 (2054)
.+... . ...+-+..|-..+.+.+. --|+.|.-.|.|+.. +..|..|++-+..++.-.|..++.
T Consensus 141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHH
Confidence 00000 0 011123444444433322 234555556666543 456788888888889999999999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCH
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS 779 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~ 779 (2054)
+++.|-. +. .|+.|.+.|.+ ..+.||.+|+.||+.++ .+..++.|.+++.+..+
T Consensus 210 VfGQl~s--~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 210 VFGQLQS--PA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEER 265 (289)
T ss_pred HHhhccc--hh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHH
Confidence 9999964 33 78889888876 67889999999999776 56688899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 000145 780 EGKKNASRALHQLL 793 (2054)
Q Consensus 780 evr~~Aa~AL~nL~ 793 (2054)
.+++.+..+|.-+-
T Consensus 266 vv~esc~valdm~e 279 (289)
T KOG0567|consen 266 VVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888886544
No 76
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0084 Score=77.08 Aligned_cols=409 Identities=14% Similarity=0.041 Sum_probs=243.8
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.+..+..-+.++++.+|+....+|.-+........ .....+.+.+++..++..-+..+++.++.+..+ ..-..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhh
Confidence 45677888888899999998888877765322111 122456677888888888899999999998753 233444
Q ss_pred HHcCChHHHHHhhccCChhHHHH-HHHHH----HHHHHhhchhhHHHH---HHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDA-SAMAL----TKLIRAADSATINQL---LALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~-AA~AL----~nLs~~~e~~~Ip~L---v~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.+.+.+..|....++.....++. +.-+. .+|....+...++.+ ..-..+..+.++..+..+...+....+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 56778888888877766544443 22111 122222234444444 44444666778888888877765443321
Q ss_pred HHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
.++ -.++.++.-+....+..+..++..+..+.. ..+..-...-..++|.+.+.|.+..+++|+.+..+|.++
T Consensus 251 -aVK------~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 251 -AVK------LLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -hhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 111 135555555555588999999999999988 455555666789999999999999999999999999999
Q ss_pred hCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC----ChHHHHHHHhcCcHHHHHHHHcCCCHHHH
Q 000145 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS----DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2054)
Q Consensus 707 s~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~----~~e~r~~Iv~~g~I~~LV~LL~s~~~evr 782 (2054)
+..... +... -.++.|++.+.++...+. ++...|+.=.- ++.... -.+|.|-+-+.+.+..++
T Consensus 323 ~svidN-~dI~------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 323 GSVIDN-PDIQ------KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHhhcc-HHHH------HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhh
Confidence 872211 1111 166778887776653333 23333331110 111111 123444456677788899
Q ss_pred HHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCc
Q 000145 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862 (2054)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~ 862 (2054)
+.++.+..|++.--+....+...+ ...++.|-..+.+. ....+..+.++|+.+-+......+. ..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~-----------d~ 454 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFD-----------DL 454 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccc-----------cc
Confidence 999999999997432222222111 22344444444444 3456889999997665422111111 12
Q ss_pred hHHHHHhhhcCChh-HHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHH
Q 000145 863 IEPLVCCLAEGPPP-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2054)
Q Consensus 863 L~~Lv~ll~~~~~~-vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2054)
++-+.+........ -+..+...|...+.... ++.-.+|+.++...+.+....+...+|-.+++
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLG------VEKVEDILPEILANASSVLIDERIRDGVIWLF 518 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhccc------chHHHHHHHHHHHHHhhccchhhhccCeeehh
Confidence 33333333333333 36677777888777543 23334555666665555555544444444443
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0038 Score=78.54 Aligned_cols=347 Identities=15% Similarity=0.165 Sum_probs=217.2
Q ss_pred hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchh
Q 000145 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 430 ~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..+.+++.+..+...+..++.+|+..+.|++.-.... ....-......+-++....+..++ .++..|-.+-..-...+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccc
Confidence 3466788899999999999999999999988642111 111111223344555555554444 44555555543211111
Q ss_pred hHHHhhCCCchHhhhhhc----CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCChHHHHHhhccCChhHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s----~s~~Vre~AA~aL~nLa~~sd~~r~~I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~n 584 (2054)
.. .-.++.++.+|+. .++..|......|..|-...+ .+++.- ....+.|+..|.+.++++|.-+-.+|.+
T Consensus 160 ~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 160 AS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 10 2346667777654 488999998888888854222 233221 4456778889999999999888888877
Q ss_pred HHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHH
Q 000145 585 LIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQE 655 (2054)
Q Consensus 585 Ls~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre 655 (2054)
+-... ....++.++.-+.+.++.++..+..=+.-+... ..++.. ...+|.+..+...+.+..+ .+++
T Consensus 235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~g~~~l---~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-PGRDLL---LYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-CCcchh---hhhhhhhhhcccCCCCCccccHHH
Confidence 75442 134677788888888888776553333322221 111111 1223444555555544443 3444
Q ss_pred HHHH---HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhh
Q 000145 656 YAAS---VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2054)
Q Consensus 656 ~Aa~---ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~L 732 (2054)
.+.. -|..+++ .+.....+--..++..+.+.+.++....|..+..-+..|-...+ .............|++-
T Consensus 311 ~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHh
Confidence 4432 3455554 23222222222467888889999999999999988888876332 33344555678889999
Q ss_pred hhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 733 AKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 733 L~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
|.+.+++|...++..+++++.++..... -..+..|.++..++..-++..+..++.+||.-
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999986654311 12344566777777777888899999998873
No 78
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.63 E-value=0.028 Score=69.46 Aligned_cols=345 Identities=14% Similarity=0.092 Sum_probs=216.4
Q ss_pred CcHHHHHHHHccC-CHHHHHHHHHHHHHhccCchhHHHHHhc------CC-hHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 000145 84 QAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLG------GC-IPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 84 GgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~------Ga-Ip~LV~LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
..+..++.+++.. .++....+...+..+-.....|..+... .. -+..+.+|.+.|.-..+...+.+..++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4688888888775 5677777777776665555555444331 22 57888999999998888899999999987
Q ss_pred CCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHH
Q 000145 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQ 233 (2054)
Q Consensus 156 ~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq 233 (2054)
|.-+- .+.+.-+-. ..|-.++.+..+.+ ....+.++|-.+...++-| -.+..+.|+..++..+.+. +-..+
T Consensus 145 g~~~~-~~~e~~~~~---~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 145 GNCKM-ELSELDVYK---GFLKEQLQSSTNND--YIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred ccccc-cchHHHHHH---HHHHHHHhccCCCc--hHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHH
Confidence 54211 111222222 23444555433233 4567889999999988766 5556678889999888532 35688
Q ss_pred HHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccH------HHHHHHHhcCCHHHHH
Q 000145 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLI 307 (2054)
Q Consensus 234 ~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~------e~Rk~I~eaggL~~LI 307 (2054)
-..+.++|.|.+. +...+.+...+.++.|..+++.+..+.|-+.+..++.|+..+.+ +....|+..+..+. +
T Consensus 218 YqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-L 295 (442)
T ss_pred HHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-H
Confidence 8899999999854 33445566778999999999866667788888889999988643 23334443333333 3
Q ss_pred HhhcCC-chhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCccc
Q 000145 308 GAIVAP-SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386 (2054)
Q Consensus 308 eLL~s~-s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~ 386 (2054)
+.|... -.+ +--...+.++ .+-| ......++..+.+
T Consensus 296 ~~L~~rkysD-----------EDL~~di~~L-----------~e~L---------~~svq~LsSFDeY------------ 332 (442)
T KOG2759|consen 296 QSLEERKYSD-----------EDLVDDIEFL-----------TEKL---------KNSVQDLSSFDEY------------ 332 (442)
T ss_pred HHHHhcCCCc-----------HHHHHHHHHH-----------HHHH---------HHHHHhhccHHHH------------
Confidence 333221 100 0000111111 1100 0000111111111
Q ss_pred chhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh---------hhhHHHhhc--chHHHHHHHhccCC-HHHHHHHHH
Q 000145 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI---------FLSQWVSHA--EAKKVLIGLITMAT-ADVREYLIL 454 (2054)
Q Consensus 387 ~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~---------~~~~~L~~~--g~I~~LI~LL~ssd-~evq~~Aa~ 454 (2054)
.-.+. .|.+..+| ++...+.+. +.++.|+.+++.++ +.+...|+.
T Consensus 333 --------~sEl~---------------sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~ 389 (442)
T KOG2759|consen 333 --------KSELR---------------SGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACH 389 (442)
T ss_pred --------HHHHH---------------hCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhh
Confidence 00000 01111111 122223332 46788999998765 888888899
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhh
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~ 503 (2054)
-++......|+.+..+.+.||=+.+.++++++|+++|.+|+.++..|-.
T Consensus 390 DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 390 DIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999888888889899999999999999999999999999887765
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.60 E-value=0.015 Score=71.83 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=206.2
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh-------cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCc
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH-------AEAKKVLIGLITMATADVREYLILSLTKLCRREV 464 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~-------~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~ 464 (2054)
...++.++.+.+.++....+..-+..+.....-+..+.+ ...-.+.+.++...+.-........+..++....
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~ 146 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN 146 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 356777777776665656665555555433222221111 1234667888888888888777788877766532
Q ss_pred cchhhhhccc-cHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 465 GIWEAIGKRE-GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 465 e~r~~Ive~g-gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
..-. ..+.. -...|...+++ .+......++.+|.-+.. .+++|..++.++++..++..+.++ +-.++-+...++
T Consensus 147 ~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 147 CKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 2110 00000 12234455555 567788889999999988 589999999999999999998433 778899999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhc-------------hhhHHHHHHHhc---C
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAAD-------------SATINQLLALLL---G 603 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e-------------~~~Ip~Lv~LL~---~ 603 (2054)
+-|+.+ +...+.+...+.++.|..++++.. +.+-+-+..++.|+..... .+-++.-++.|. .
T Consensus 225 WlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 999985 445566678899999999998754 5677888888889876541 011233334443 2
Q ss_pred CCcchHHHH---HHHHHH----HHhh----------------h-cchHHHHhh---hh--cccchHHHHHHhccCC-HHH
Q 000145 604 DSPSSKAHV---IKVLGH----VLTM----------------A-LQEDLVQKG---SA--ANKGLRSLVQVLNSSN-EEN 653 (2054)
Q Consensus 604 ~~~~V~~~a---~~AL~~----La~~----------------~-~~~d~~~~~---l~--~~GaI~~LV~LLks~s-~ev 653 (2054)
+|++..... .+-|.+ |+.. . .+++++++- +. .-..++.|+.+|++++ +.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 333322111 111111 1110 0 011111111 11 1234788999998875 677
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
-..|+.=+.......|+.+..+.+.|+=..+++++.+++++||-+|..|+..|-.
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 7777777888888899999999999999999999999999999999999988864
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.017 Score=75.21 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh-------------hhhHHHh-----hcchHHHHHHHhccCCHHHH
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-------------FLSQWVS-----HAEAKKVLIGLITMATADVR 449 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~-------------~~~~~L~-----~~g~I~~LI~LL~ssd~evq 449 (2054)
..|..+++-.|-++..++++-..+..++..+..++ +...|+. ..+-+..++..+...|-.++
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 34554555555555556667788888888875432 2233433 23678888999999999999
Q ss_pred HHHHHHHHHhcc-cCccchhhhh-ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc
Q 000145 450 EYLILSLTKLCR-REVGIWEAIG-KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 450 ~~Aa~AL~~Ls~-~s~e~r~~Iv-e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s 527 (2054)
.+++..+..+-. ...+.++.+. -.-||..++.++.+..+.+|..++-.|+.|+..++.....+.=.++...|..++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999988644 4455665544 45699999999999999999999999999999777776666667788889988865
Q ss_pred C---C-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc---CChhHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 000145 528 G---S-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS---GGPKGQDASAMALTKLIRAADSATINQLLAL 600 (2054)
Q Consensus 528 ~---s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS---~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~L 600 (2054)
. + .-+.+.|...|-||-.++..++..+.+.+-||.|.++|.- ++.++-.+...=..|+-. ++. +++.
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~-----~Lq-ivr~ 293 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIE-----ALQ-IVRS 293 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHH-----HHH-HHHH
Confidence 3 2 3678899999999999999999999999999999987753 332222222222222210 111 1111
Q ss_pred hcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000145 601 LLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLAT 677 (2054)
Q Consensus 601 L~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~ 677 (2054)
+-. ++..-.. ...++.+...+.+..|..++-++ ..+++..+.-++++...++..+...+.+
T Consensus 294 lVsP~Nt~~~~----------------~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 294 LVSPGNTSSIT----------------HQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred hcCCCCcHHHH----------------HHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 211 1111000 01123345667888888887766 4678888888899998887777766654
Q ss_pred CCC------HHH----HHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 000145 678 DEI------VNP----CMRLLTS-NTQMVATQSARALGALSRP 709 (2054)
Q Consensus 678 ~g~------V~~----Lv~LL~d-gs~~vr~~AA~AL~nLs~s 709 (2054)
..+ .+. ++.+..+ .+...|...++++......
T Consensus 358 v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 358 VTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred ccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 211 122 2233333 3557777888888887763
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.56 E-value=0.0032 Score=76.98 Aligned_cols=264 Identities=14% Similarity=0.115 Sum_probs=175.7
Q ss_pred hHHHhhcchHHHHHHHhccCCHHH--HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHH
Q 000145 425 SQWVSHAEAKKVLIGLITMATADV--REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 425 ~~~L~~~g~I~~LI~LL~ssd~ev--q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nL 501 (2054)
+..+...+++..|+.++...+.+. +..++..|-.+... ++++.+...| ...++.+.+. ...+.++..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 345667789999999999887554 77888888776544 5666666544 4555555543 3456778889999999
Q ss_pred hhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHH
Q 000145 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAM 580 (2054)
Q Consensus 502 s~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~ 580 (2054)
-.|+.+....+++.|++..++--.+..+|.+.+.++-+|+|+..+. ...++.+++..+-+=|+-+..+.+.-++.+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999998764 345566667888888888888888889999999
Q ss_pred HHHHHHHhhc-------hh---hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCC
Q 000145 581 ALTKLIRAAD-------SA---TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSN 650 (2054)
Q Consensus 581 AL~nLs~~~e-------~~---~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s 650 (2054)
+...+....+ .+ .+.++++.+ ++... +. +..+..+. ....-++.|+.++.+.-
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~---DP~~F----------AR--D~hd~aQG--~~~d~LqRLvPlLdS~R 392 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASL---DPGRF----------AR--DAHDYAQG--RGPDDLQRLVPLLDSNR 392 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhcc---Ccchh----------hh--hhhhhhcc--CChHHHHHhhhhhhcch
Confidence 9988876632 22 233333332 33211 11 01111111 12335788888887544
Q ss_pred HHHHHHHHHHHHHHhh-cChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 651 EENQEYAASVLADLFS-MRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 651 ~evre~Aa~ALanLas-~~~e~r~~I-v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
-+.+.-++--|..=+. .....+..+ -+-|+|..|-++..+.+..-...|.+||.-+..
T Consensus 393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 4444333221111111 012222333 345889999998887666656667778776654
No 82
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.64 Score=59.32 Aligned_cols=582 Identities=13% Similarity=0.081 Sum_probs=290.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc---CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 90 ISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG---GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 90 V~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~---GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
...|++..|..-..|+..+..++.-+ +-.. |....|++-..+ +...++.+++.++.+.|... ++ +
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~E-----lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~---~P---e 168 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARME-----LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE---AP---E 168 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhh-----CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc---CH---H
Confidence 45667777777777777777765321 1111 445555555555 35668889999999999742 22 2
Q ss_pred HHH-HcCcH-HHH-HHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH-hhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 166 IFV-TEGVV-PTL-WDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 166 ~Iv-~aG~V-p~L-v~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~-eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
.++ ..+.+ -.+ ...++.. .+..++..++++|.+-+---.++...=. ..--++..+..-..++.+++..+..+|.
T Consensus 169 ~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 332 22322 222 2223322 3567888888888873321111000000 0113556666667778899999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
++..-..+.-+...+.-......+-+++ .+.++..++.+-...++.. +.--.+. +..+-. .
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeE--eid~~~e--------~~~~pe-~------- 307 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEE--EIDGEME--------DKYLPE-V------- 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHH--HhhhHHH--------Hhhccc-C-------
Confidence 8884332222333333333334455553 4557777777666555542 1110110 000000 0
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
+.|.+.. ++ ..+++++..+...+.. ++++...+.+
T Consensus 308 ---p~qn~~f-a~------------------------aav~dvlP~lL~LL~~--q~ed~~~DdW--------------- 342 (858)
T COG5215 308 ---PAQNHGF-AR------------------------AAVADVLPELLSLLEK--QGEDYYGDDW--------------- 342 (858)
T ss_pred ---chhhcch-HH------------------------HHHHHHHHHHHHHHHh--cCCCcccccc---------------
Confidence 0111110 00 1112222222221111 0111111111
Q ss_pred CChhhHHHHHHHHHHH---hhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc-hhhhhccccHH
Q 000145 402 HDNKLVQERVLEAMAS---LYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQ 477 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~---L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~-r~~Ive~ggIp 477 (2054)
.+...|..+|-- ++++. +. .....+.-.-+++.+-.-++.++.+++..-....+. ...++ ...+|
T Consensus 343 ----n~smaA~sCLqlfaq~~gd~-----i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp 411 (858)
T COG5215 343 ----NPSMAASSCLQLFAQLKGDK-----IM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALP 411 (858)
T ss_pred ----chhhhHHHHHHHHHHHhhhH-----hH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhH
Confidence 122222222221 11111 11 112233333455666666777888888776553322 22332 35677
Q ss_pred HHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC---CHHHHHHHHHHHHHHhcCChhHHH--
Q 000145 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWILCCHSEDIRA-- 552 (2054)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~---s~~Vre~AA~aL~nLa~~sd~~r~-- 552 (2054)
.+..+..++.--++..++|+++.++.+-.+ .|-..|-+++.+.-+--+ .+.+..++.|...||..+-.+.-+
T Consensus 412 ~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~ 488 (858)
T COG5215 412 GIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREV 488 (858)
T ss_pred HHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccc
Confidence 777777766667899999999999875322 233456677766654433 677888899999999764322110
Q ss_pred --HHHH--cCChHHHHHhh--ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 553 --CVES--AGAVPAFLWLL--KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 553 --~I~e--~GaI~aLV~LL--kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.+.. ...+..|++-- ...+...|...=.+|+.+..- ..+.|. ..++.+......
T Consensus 489 ~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~---------------~~d~V~----~~~a~~~~~~~~- 548 (858)
T COG5215 489 ESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI---------------CPDAVS----DILAGFYDYTSK- 548 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh---------------cchhHH----HHHHHHHHHHHH-
Confidence 0100 11122222211 111223444444444444322 111111 111111111000
Q ss_pred HHHHhhhhcccchHHHHHHhccC----CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHH
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSAR 701 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~----s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~-~vr~~AA~ 701 (2054)
.+ ...+..+-+.+..+ -++++.+-+.+|..+....+...+. ++.-.+.-++++|.+.++ .+-...-.
T Consensus 549 -----kl--~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~ 620 (858)
T COG5215 549 -----KL--DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYT 620 (858)
T ss_pred -----HH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHH
Confidence 00 00122222222222 3566677777777775533222221 122256677777876544 33444566
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CH
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TS 779 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~ 779 (2054)
++.+++.+. +.+....-...+|.|.+-|+..+..+...|++.++.|+..=+..-.+........|++++.+. +.
T Consensus 621 aIsal~~sl----~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R 696 (858)
T COG5215 621 AISALSTSL----EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHR 696 (858)
T ss_pred HHHHHHHHH----HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcc
Confidence 677777633 334444556688999999988888888899999999875222111223334567888888776 45
Q ss_pred HHHHHHHHHHHHhhh
Q 000145 780 EGKKNASRALHQLLK 794 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~ 794 (2054)
++|-....+.+.++.
T Consensus 697 ~lKPaiLSvFgDIAl 711 (858)
T COG5215 697 DLKPAILSVFGDIAL 711 (858)
T ss_pred ccchHHHHHHHHHHH
Confidence 677766677666655
No 83
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.49 E-value=0.05 Score=73.25 Aligned_cols=414 Identities=17% Similarity=0.129 Sum_probs=263.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
..+..-+++....+.++..++.-+.+++..-. ......+.++.++++..++...+|..|...+.++...-...- =
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d 312 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D 312 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h
Confidence 34555667777888888888888888876522 255566788889999999889999999999888876321111 1
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--- 589 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--- 589 (2054)
......+.+++..++++..++...+.....|...-. .......-+++...++++...+++...+.-...+....
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 223467788888888888888888777777654111 11122345667777888877788877777666665442
Q ss_pred ------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 ------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 ------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
....+|.+..+..+.+++++...+.....+.-..+.+. .-....+.++..+++..++++.+....+..
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~------ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER------TISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc------CccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 23456888888888888887665444443322212111 112346667778888899999999987777
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHH
Q 000145 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~ 743 (2054)
+-..+.........+.-++.+..+-.+...+++....+.+..++.... ..+.+......+..-+.+....+++.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~------~~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG------VEFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh------hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 655455555566667778888888888888888888888888875211 22333333333344466667788888
Q ss_pred HHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc
Q 000145 744 AVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2054)
Q Consensus 744 Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s 821 (2054)
|+..|.-++. ...+. ....++.+.....+++-..|.....++.-+.. .+.+.+-+....+.+.++..+
T Consensus 538 aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~------v~g~ei~~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE------VLGQEITCEDLLPVFLDLVKD 607 (759)
T ss_pred HHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH------HhccHHHHHHHhHHHHHhccC
Confidence 8888887754 22232 12245555555555566777777777775553 333444455667777777765
Q ss_pred CCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHh
Q 000145 822 MDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 822 g~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L 888 (2054)
...+ .+..++..|..+.+--.. . .....-++.+..+..+.+..++.+|..+..-+
T Consensus 608 ~van--VR~nvak~L~~i~~~L~~-~---------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 608 PVAN--VRINVAKHLPKILKLLDE-S---------VRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred Cchh--hhhhHHHHHHHHHhhcch-H---------HHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 5444 488888777665531100 0 00112344555555566667888887766543
No 84
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.13 Score=67.48 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=238.0
Q ss_pred HHHHHHcCCCChhhHHHHHHH-HHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLE-AMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~-AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
.-|+.++++..+. .+..|.. .++-++.+.+... ..+..++...+.+.++++-.--.|...+...++.. +
T Consensus 38 ~dL~~lLdSnkd~-~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS-LKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L- 107 (968)
T ss_pred HHHHHHHhccccH-HHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e-
Confidence 3466777776655 4455554 4444455544332 34567777788888888777666666665533321 1
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
=.|..+-+-|+++|+.+|..|+..|..+-.. ++..=.+-.+-++..+.++-+|..|+.++-.|=.-+.+.+
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 2477888899999999998888877655331 1111011122234456689999999999988843222222
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchH
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQED 627 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d 627 (2054)
.. .+..+-.+|.+.+|-+.-.|+.+.-.++-+.- .+-...+..++.+-++--+....+.|..-++. ...+.
T Consensus 179 ~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 179 DQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred HH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 22 23444568889999999999988877764410 11122334444332222222222222222211 00000
Q ss_pred HHHhh--------------------hhcccc----hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHH
Q 000145 628 LVQKG--------------------SAANKG----LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNP 683 (2054)
Q Consensus 628 ~~~~~--------------------l~~~Ga----I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~ 683 (2054)
..... .....- ++..-.++.+.++.+...++.++..++..+ -..+++++
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~ka 326 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKA 326 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHH
Confidence 00000 000111 222333666778888899999999887521 12356789
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhh-HHhh-hhcCCH-HHHHHHHHHHHHhhCChHHHHH
Q 000145 684 CMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKP-LIKL-AKTSSI-DAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 684 Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~-Lv~L-L~s~d~-~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
|+++|++ ++.+|.-..+++.-++.-.+ +...| +-+. +.+.|+ .++.-=+..|.||+......
T Consensus 327 LvrLLrs-~~~vqyvvL~nIa~~s~~~~------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-- 391 (968)
T KOG1060|consen 327 LVRLLRS-NREVQYVVLQNIATISIKRP------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-- 391 (968)
T ss_pred HHHHHhc-CCcchhhhHHHHHHHHhcch------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH--
Confidence 9998876 34445545555555553111 12222 2222 233333 34445677777776432221
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
..++.+..++.+.+..+-..|+.++++.+...- .+ ...++..|+.++++.+... ..++...+..|-
T Consensus 392 ----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~---sv-----~~tCL~gLv~Llsshde~V--v~eaV~vIk~Ll 457 (968)
T KOG1060|consen 392 ----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG---SV-----TDTCLNGLVQLLSSHDELV--VAEAVVVIKRLL 457 (968)
T ss_pred ----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---ch-----hhHHHHHHHHHHhcccchh--HHHHHHHHHHHH
Confidence 134456677777777777777788877776421 11 1346677888887654433 556655555544
Q ss_pred hcc-------------------cCCCccCCccccccc-------CCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 841 RTK-------------------QGLNFTYPPWAALAE-------VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 841 ~~~-------------------~~~~~i~~~~~~~~~-------~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
..+ ....+....|..+.- .|..+..+.....++.++++-..++.-.++.-
T Consensus 458 q~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 458 QKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred hhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 211 112222234554431 23344555566667777777777666666544
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.057 Score=64.35 Aligned_cols=404 Identities=13% Similarity=0.134 Sum_probs=222.1
Q ss_pred HHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch-----hHHHHHhcCChHHHHHhhc
Q 000145 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-----LRLKVLLGGCIPPLLSLLK 135 (2054)
Q Consensus 61 AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee-----~r~~v~~~GaIp~LV~LL~ 135 (2054)
+..+|..+-+..+.+.-. .+.+|.|-.-|..++..++.-+|+.++.+-.+.+ ....++..|..+.++.++.
T Consensus 63 cVscLERLfkakegahla----pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLA----PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccchhhc----hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 677777776555332211 2345566666677789999999999977755432 2334456799999999999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhh
Q 000145 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEA 215 (2054)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~ea 215 (2054)
.+|.++-.+|.+.+..++. .+.+.+.++..... .+.. ++|++..
T Consensus 139 geddeVAkAAiesikrial-----fpaaleaiFeSell------------Ddlh--------lrnlaak----------- 182 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL-----FPAALEAIFESELL------------DDLH--------LRNLAAK----------- 182 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccC------------ChHH--------HhHHHhh-----------
Confidence 9999999999999999996 34444444432211 1111 2233221
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 216 GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 216 GGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
.++-++..+..++..++.-++.......++|.+..|..-|.-..|.-++..+......|... ...|+
T Consensus 183 ------------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgre 249 (524)
T KOG4413|consen 183 ------------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGRE 249 (524)
T ss_pred ------------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhh
Confidence 11223344444455555444444455667888888888887446777888888888888873 55555
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
-+.+.|.++.+...+...+++... .-+++....+..| . .. ++
T Consensus 250 flaQeglIdlicnIIsGadsdPfe-------kfralmgfgkffg--------------k-------------ea----im 291 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFE-------KFRALMGFGKFFG--------------K-------------EA----IM 291 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHH-------HHHHHHHHHHHhc--------------c-------------hH----Hh
Confidence 566667666666666543322100 0111111111111 0 00 00
Q ss_pred hcCCCCCCcccchhhHHHHH------HHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcch--HH-HHHHHhccCCH
Q 000145 376 EQKSGVDDEPFDARQIEDIL------VMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEA--KK-VLIGLITMATA 446 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~L------v~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~--I~-~LI~LL~ssd~ 446 (2054)
+......++.+. ...+.+.+++ ++..++.+++.+..+..-...+...+- .+ .+......+..
T Consensus 292 --------dvseeaicealiiaidgsfEmiEmnDpd-aieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 292 --------DVSEEAICEALIIAIDGSFEMIEMNDPD-AIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred --------hcCHHHHHHHHHHHHHhhHHhhhcCCch-HHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc
Confidence 000111111111 2334555554 889999999998766554444443332 22 23333444445
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh
Q 000145 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2054)
Q Consensus 447 evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~ 526 (2054)
.-|..+..+|.+++..-......+.+. ....+..+.+. ..+++ +. +..-...+...+.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDg-------------kaeerlrclif-daaaq-st-------kldPleLFlgilq 420 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDG-------------KAEERLRCLIF-DAAAQ-ST-------KLDPLELFLGILQ 420 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhcccc-------------HHHHHHHHHHH-HHHhh-cc-------CCChHHHHHHHHc
Confidence 556677788887776522222222221 11111111111 11111 11 1123344566777
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC---ChhHHHHHHHHHHHHH
Q 000145 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG---GPKGQDASAMALTKLI 586 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~---~~evq~~AA~AL~nLs 586 (2054)
.+.++++..+..++..++...=..+.++.+.+.|.....--... ..+.++.++.++.+-.
T Consensus 421 QpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaeaf 483 (524)
T KOG4413|consen 421 QPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEAF 483 (524)
T ss_pred CCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999765444566666666665544322111 2356777777776654
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.015 Score=74.87 Aligned_cols=325 Identities=16% Similarity=0.110 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD 604 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~ 604 (2054)
+..+|++-.-.-+.++.|-......+ ...+..+++-+...++.+|+....+|..+....+ ....+-+.+++...
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 146 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST 146 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc
Confidence 44555554444444544322211111 2345667777778888999999988887765532 23456677777766
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHH
Q 000145 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEYAASVLADLFSMRQDICGSLATDEIVNP 683 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~ 683 (2054)
+..-+..+...++.+..... .....+.+.+..|....++.+. .-|+.+.-++-..+. +-+...++..++.
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~-----i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~----~Lg~~~EPyiv~~ 217 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLG-----IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG----NLGPPFEPYIVPI 217 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcH-----HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH----hcCCCCCchHHhh
Confidence 65556666666665543211 1113455678888888877643 334433333333222 1223344555555
Q ss_pred HHHHh---ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH
Q 000145 684 CMRLL---TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 684 Lv~LL---~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
+-.++ .+..+.+|..|..+...+-+..+. .. -...+++++.-+.......+..++..|+.|+.....+-.
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---ch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 54444 466778888887777777653332 11 122566666555555666777899999999876666666
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
...+..+|.+.+.|.+.++++|+.+..+|-+++.-.... ++ ...++.|++.+.+.+.. ..+++..|+.-+
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-dI------~~~ip~Lld~l~dp~~~---~~e~~~~L~~tt 360 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-DI------QKIIPTLLDALADPSCY---TPECLDSLGATT 360 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-HH------HHHHHHHHHHhcCcccc---hHHHHHhhccee
Confidence 777889999999999999999999999999999853221 12 23667788888654422 334444332211
Q ss_pred hcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 841 RTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 841 ~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
-..+..++- ...-.+.|.+-+.+.+..++.+++.+..|++.
T Consensus 361 ----FV~~V~~ps-----LalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 361 ----FVAEVDAPS-----LALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred ----eeeeecchh-----HHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 111111110 11124556666677777799999999999987
No 87
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.87 Score=58.17 Aligned_cols=461 Identities=16% Similarity=0.136 Sum_probs=258.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCCh-hhhHHHHHHHHHHhhhccchhhHHH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSE-QHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~-~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
-.+..++++.++..+...-.++..++.-..+.- -|...++.=+..+.+ .++-.|++.|...-..
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl------m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~--------- 132 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL------MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG--------- 132 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh------HHHHHHHHhhccCCccccccHHHHHHHHhcCc---------
Confidence 345677888888877766677777765432221 133445554455544 5777777777665442
Q ss_pred hhCCCchHhhhhhc----CCHHHHHHHHHHHHHHhcCChh-HHHHHHH-cCChHHHHHh---------hccCChhHHHHH
Q 000145 514 AAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSED-IRACVES-AGAVPAFLWL---------LKSGGPKGQDAS 578 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s----~s~~Vre~AA~aL~nLa~~sd~-~r~~I~e-~GaI~aLV~L---------LkS~~~evq~~A 578 (2054)
..++.+-++|++ ..+.++..|...-+.|-..+.. .++..-+ .+++-.+-.. -.++++-.|++|
T Consensus 133 --~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa 210 (898)
T COG5240 133 --ETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA 210 (898)
T ss_pred --chhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH
Confidence 233333344443 3455555555555555433222 2222211 1222222111 012345567777
Q ss_pred HHHHHHHHHhh------------------------------------chhhHHHHHHHh----cCCCcchHHHHHHHHHH
Q 000145 579 AMALTKLIRAA------------------------------------DSATINQLLALL----LGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 579 A~AL~nLs~~~------------------------------------e~~~Ip~Lv~LL----~~~~~~V~~~a~~AL~~ 618 (2054)
...|+.+-+++ +.....++..+| ++.-+.|...+++++..
T Consensus 211 lGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~ 290 (898)
T COG5240 211 LGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCA 290 (898)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 77777665431 011222333333 34445677777777776
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
++...-.++.++. .+..|-.+|++.....|-.|.++|..|+...|+.. .+. =+.+-.+..+.+..+...
T Consensus 291 ~~~~nv~~~~~~~------~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~vc----N~evEsLIsd~Nr~Isty 359 (898)
T COG5240 291 LSEENVGSQFVDQ------TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SVC----NKEVESLISDENRTISTY 359 (898)
T ss_pred HHHhccCHHHHHH------HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-eec----ChhHHHHhhcccccchHH
Confidence 6533223344333 47777788888888889999999999887443221 111 123344556666666665
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHH-HHcC
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTR-VLAE 776 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~-LL~s 776 (2054)
|...|-+-.. .+ .-++ .+..+..++++-+++-+.-+..++..|+. .|.-... .+..|.. ++.+
T Consensus 360 AITtLLKTGt--~e---~idr-----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~e 424 (898)
T COG5240 360 AITTLLKTGT--EE---TIDR-----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQE 424 (898)
T ss_pred HHHHHHHcCc--hh---hHHH-----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhc
Confidence 5555544322 22 1111 23334455565555555444444444443 2332222 3344554 5567
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCccccc
Q 000145 777 GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856 (2054)
Q Consensus 777 ~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~ 856 (2054)
|.-+.++.++.++..+....|... +.++.-|+....+-+.+ .-+++.|+.|.+..+. ..
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~p~sk--------EraLe~LC~fIEDcey~----~I~vrIL~iLG~EgP~---a~------ 483 (898)
T COG5240 425 GGLEFKKYMVDAISDAMENDPDSK--------ERALEVLCTFIEDCEYH----QITVRILGILGREGPR---AK------ 483 (898)
T ss_pred ccchHHHHHHHHHHHHHhhCchHH--------HHHHHHHHHHHhhcchh----HHHHHHHHHhcccCCC---CC------
Confidence 788899999999999888654211 33555566666544433 3567788888764321 11
Q ss_pred ccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHhccc
Q 000145 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKE 936 (2054)
Q Consensus 857 ~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~~k~ 936 (2054)
+....+..+..-+--++..+|.+|+.+|+++.-....+ .....|..+++|.++...+|||--++-.+=-+.
T Consensus 484 -~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~-- 554 (898)
T COG5240 484 -TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR-- 554 (898)
T ss_pred -CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--
Confidence 01123555666666778889999999999875543221 123567899999999999999988877663222
Q ss_pred chhhhHHHH---hhcCCcHHHHHHHHHHhhhccCCC
Q 000145 937 HKKQSMDAL---DLSGYLKPLIYALVDMMKQNSSCS 969 (2054)
Q Consensus 937 ~~~~~~~~L---~~~g~~~~~i~~Lv~l~~~~~~~~ 969 (2054)
...+...| +.+|-++++-..|+--..|-+...
T Consensus 555 -~~da~~pl~~sd~~~dipsle~~l~~yIse~sf~t 589 (898)
T COG5240 555 -LSDACEPLFSSDELGDIPSLELELIGYISEDSFAT 589 (898)
T ss_pred -hhhhhhccccccccCCcchhHHhhheeeccccccc
Confidence 22222333 788888998888887776644433
No 88
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.33 E-value=0.00093 Score=70.60 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHh
Q 000145 443 MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2054)
Q Consensus 443 ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV 522 (2054)
..+.+.++....-|.|++.+ +.+...+.+...+..++..+...|+...+.++.+|||+|. +..+...|.+++++|.++
T Consensus 28 tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLII 105 (173)
T ss_pred hccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEE
Confidence 45788888888999999998 8899999999999999999999999999999999999998 688999999999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000145 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2054)
Q Consensus 523 ~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e 556 (2054)
..+.++...+...++.++..|...+..-|..+.+
T Consensus 106 ~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 106 FVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred eecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999999998765555555543
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.12 Score=67.21 Aligned_cols=216 Identities=18% Similarity=0.226 Sum_probs=132.7
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHH
Q 000145 219 DIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 219 ~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
+-+..+|++.-+-++..|+.+|++++..-|+.. .-+.|.|..-|. ++|+.++..|..+++.|+.++|++.-.+.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 456778888889999999999999995443322 237899999998 68999999999999999999887775554
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000145 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2054)
Q Consensus 299 eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~ 378 (2054)
|.+..++.+.+... .+..+.++.|.+.++= |+...+..
T Consensus 221 -----P~ffkllttSsNNW------------mLIKiiKLF~aLtplE---------PRLgKKLi---------------- 258 (877)
T KOG1059|consen 221 -----PLFYKLLVTSSNNW------------VLIKLLKLFAALTPLE---------PRLGKKLI---------------- 258 (877)
T ss_pred -----HHHHHHHhccCCCe------------ehHHHHHHHhhccccC---------chhhhhhh----------------
Confidence 66777776655332 2333344444333321 12111111
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH--Hhh-cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHH
Q 000145 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA--SLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2054)
Q Consensus 379 ~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~--~L~-~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~A 455 (2054)
+.|..++.+...-.+--.++.++. ++. +.++....+ .-+++-|-.++.++|+..+.-++-+
T Consensus 259 --------------eplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 259 --------------EPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred --------------hHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHH
Confidence 122222222111111111111111 111 111111110 1245566677888889988888888
Q ss_pred HHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhh
Q 000145 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2054)
Q Consensus 456 L~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~ 503 (2054)
+..+...++...++ --..++++|.+.|+.+|..|+..|..+..
T Consensus 323 m~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 88888765433221 23457889999999999999999988876
No 90
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.06 Score=66.88 Aligned_cols=309 Identities=16% Similarity=0.129 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc-----cCccchhhhhccccHHH---
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR-----REVGIWEAIGKREGIQL--- 478 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~-----~s~e~r~~Ive~ggIp~--- 478 (2054)
+|..+...|..++..-..-+. ......+.+-.-+....++++..++..+..+.. ..++.++.-...+..-.
T Consensus 271 ~rle~~qvl~~~a~~~~~~~~-~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFSMTQA-YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 666666666655443321111 000111222223355678889988887766543 22333222222221111
Q ss_pred ---HH-hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCC-CchHhhhhhcC---CHHHHHHHHHHHHHHhcCChhH
Q 000145 479 ---LI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG-IPPLVQLLEAG---SQKAREVAAHVLWILCCHSEDI 550 (2054)
Q Consensus 479 ---LV-~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa-Ip~LV~LL~s~---s~~Vre~AA~aL~nLa~~sd~~ 550 (2054)
+- ..+.+..+..+...+.++.+++.....+- ..|- ...++-++... +.-++..|.+.+.-+..|..-.
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNL----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 01 12233344556677777777764211100 0010 11111122111 2234445555555554443222
Q ss_pred HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 551 r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
....--..+...+...+.+..-..|.+++|+++|++.. |-++-|.++....++.+.+
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA------------L~~~~Ps~~s~~eR~sg~l----------- 482 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA------------LIVNMPTPDSFQERFSGLL----------- 482 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH------------HHcCCCCchHHHHHHHHHH-----------
Confidence 22222234455556666777778999999999999754 3445555555555555543
Q ss_pred hhhhcccchHHHHHHh---ccCCHHHHHHHHHHHHHHhhcChhh----hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000145 631 KGSAANKGLRSLVQVL---NSSNEENQEYAASVLADLFSMRQDI----CGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LL---ks~s~evre~Aa~ALanLas~~~e~----r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL 703 (2054)
+..++... ...+++++.++.++|.|+...-... -+.+.+...+.-+....-.+.-.+|-+|+.++
T Consensus 483 --------l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 483 --------LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred --------HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHH
Confidence 22223322 2347889999999999997631111 11122222222223333456778999999999
Q ss_pred HHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhC
Q 000145 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 704 ~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~ 753 (2054)
+||... +.. .....-....+.+.|..++.+ .+-.||..|+.+|..-..
T Consensus 555 gNLfkn-~a~-~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 555 GNLFKN-PAL-PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHhhcC-ccc-cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 999962 110 011111122355667777766 677889999999976543
No 91
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.23 E-value=1.3 Score=56.83 Aligned_cols=287 Identities=13% Similarity=0.088 Sum_probs=133.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~ 514 (2054)
+.|-..+.+.-+-++.+++.+++.++..+ .....+ ...+..|-.+|++.....|..|++.|..|+...++.- .+
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~v-- 340 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SV-- 340 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-ee--
Confidence 44455555555677778888777776653 122222 1345667777788777788888888888877443311 00
Q ss_pred hCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhH
Q 000145 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 515 aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
+=+.+-.|..+.+..+-..|...|..-+. ++.+..++ ..|+.+++=+.++-..+.-.+...|..+.-......+
T Consensus 341 --cN~evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv---~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l 414 (898)
T COG5240 341 --CNKEVESLISDENRTISTYAITTLLKTGT-EETIDRLV---NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL 414 (898)
T ss_pred --cChhHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHH---HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH
Confidence 11122223333343444444444433322 11111111 1222222222222222223333333333222222223
Q ss_pred HHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhh
Q 000145 595 NQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673 (2054)
Q Consensus 595 p~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~ 673 (2054)
.-|...|. .+.-+-+.++..++.-+....+ +.. ..++..|+.++.+ -+--+-++++|.-|....|....
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p--~sk------EraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDP--DSK------ERALEVLCTFIED--CEYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCc--hHH------HHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCC
Confidence 33332222 2222333333333333221111 110 0123444444422 12223333444444331111000
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 674 ~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
-...+..+..-+--++.-+|..|..||.+++..... ......+...|-.++++.|+++|..|...|.|+-
T Consensus 485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD------VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc------cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 011234444433345677899999999888762211 1112235556778899999999999999999985
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0029 Score=80.64 Aligned_cols=295 Identities=14% Similarity=0.107 Sum_probs=185.8
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC------h-
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS------E- 548 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s------d- 548 (2054)
...|..+....+..++..|+.+|..|+.. -.... -.....++++.+.+.++|..|...++-.+.-. +
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 34488888889999999999999888763 22111 13456678889999999999876665544311 1
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCC-----cchHHHHHHHHHHHH---
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDS-----PSSKAHVIKVLGHVL--- 620 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~-----~~V~~~a~~AL~~La--- 620 (2054)
+.+++. ..+...++..+++.+-.+|-.|+.+|+.+..-.+.-....|-+-+-++. .+.+......=|-.+
T Consensus 274 ~e~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 274 EEEKLK--DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhH--HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 112222 3467788899999999999999999998876544222222222221110 000000000000000
Q ss_pred ---hhhcc--hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHH
Q 000145 621 ---TMALQ--EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695 (2054)
Q Consensus 621 ---~~~~~--~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~v 695 (2054)
...++ .+.-...+..+|+-.++|+-++++=.++|++|+..++.|+..++.... ..+.-|+.++.|+-..+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 00000 011112255677778888888877889999999999999886665543 35788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc
Q 000145 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2054)
Q Consensus 696 r~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~ 775 (2054)
|..|..+|..++... .++++-++.+++.|.+.+.++|++.-..|++.-......-.+.-.+.+..|..
T Consensus 427 RL~ai~aL~~Is~~l---------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k--- 494 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL---------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK--- 494 (823)
T ss_pred HHHHHHHHHHHHHHh---------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh---
Confidence 999999999998621 13445778899999999999999888888876433322222211122222222
Q ss_pred CCCHHHHHHHHHHHHHhhhcCC
Q 000145 776 EGTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 776 s~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
-|+-|...-.|+.+++++.+
T Consensus 495 --yPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 495 --YPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred --CCCCcHHHHHHHHHHhccCh
Confidence 23334456677888887653
No 93
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.33 Score=64.31 Aligned_cols=426 Identities=19% Similarity=0.163 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL 134 (2054)
.+-|.-+--+|.+.+...+.-. -+++..+++=..++++.+|..|.+.++.+--+.-. .-.+.+|.+.+
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l 130 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCL 130 (734)
T ss_pred chHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhc
Confidence 3334444445555555543321 25677777777888999999999998877432211 13458899999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHh
Q 000145 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE 214 (2054)
Q Consensus 135 ~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~e 214 (2054)
+++++.+|..++-....+-.. +.+...+.|.++.|.+++.+.+ +.++.+|+.+|..+...+.+.......
T Consensus 131 ~d~~~yvRktaa~~vakl~~~-------~~~~~~~~gl~~~L~~ll~D~~---p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDI-------DPDLVEDSGLVDALKDLLSDSN---PMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcC-------ChhhccccchhHHHHHHhcCCC---chHHHHHHHHHHHHHHhCCCCCccccc
Confidence 999999999999888888752 2557788999999999998443 558889999999998776431000000
Q ss_pred hCChHHHHhhhccCCHHHHHHH-HHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHH
Q 000145 215 AGGVDIIVGLLSSDNAAAQSNA-ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKA 293 (2054)
Q Consensus 215 aGGI~~LV~LL~s~s~evq~~A-~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~ 293 (2054)
.--+..++..+. ++.+.. +.+|-++....+..... ....+..+...+++. +..+...+...+.++...-+.
T Consensus 201 ~~~~~~lL~al~----ec~EW~qi~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~- 272 (734)
T KOG1061|consen 201 PQLINKLLEALN----ECTEWGQIFILDCLAEYVPKDSRE--AEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ- 272 (734)
T ss_pred HHHHHHHHHHHH----HhhhhhHHHHHHHHHhcCCCCchh--HHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-
Confidence 001111222221 222222 23333333222211100 112333334444432 234444455555554443122
Q ss_pred HHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHH
Q 000145 294 KKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALM 373 (2054)
Q Consensus 294 Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~ 373 (2054)
.....-...-+.++.++..++ + +| ..+|.|+ +....
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e-~q-----------yvaLrNi-------------------------------~lil~ 308 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-E-IQ-----------YVALRNI-------------------------------NLILQ 308 (734)
T ss_pred HHHHHHHHhcccceeeecccc-h-hh-----------HHHHhhH-------------------------------HHHHH
Confidence 111221222333444443333 1 11 1122232 11111
Q ss_pred HhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHH
Q 000145 374 VFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453 (2054)
Q Consensus 374 ~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa 453 (2054)
+.+ +.+.. .+.+-..+..++--++..=..++..++....+.+.+. -+......-+.+..+.++
T Consensus 309 ~~p-------~~~~~----~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~------El~eYatevD~~fvrkaI 371 (734)
T KOG1061|consen 309 KRP-------EILKV----EIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLA------ELKEYATEVDVDFVRKAV 371 (734)
T ss_pred hCh-------HHHHh----HhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHH------HHHHhhhhhCHHHHHHHH
Confidence 110 01110 1122233444444466666666666655544433221 123333445788888999
Q ss_pred HHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHH
Q 000145 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKA 532 (2054)
Q Consensus 454 ~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~V 532 (2054)
+++++++..-.+. .+.|+.|+++++..-.-+...+...++.+.+..+..-..+. +.+..-+.+ .+|+.
T Consensus 372 raig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv-----~~l~~~~~sl~epea 440 (734)
T KOG1061|consen 372 RAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVV-----AILCENLDSLQEPEA 440 (734)
T ss_pred HHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhh-----hhhcccccccCChHH
Confidence 9999998763221 57889999999987777777788888888886665433332 222222333 37888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 533 REVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 533 re~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
|..-.|.++.-+..-++.- ..+..+++-.+++..++|..-..+...++-.
T Consensus 441 k~amiWilg~y~~~i~~a~------elL~~f~en~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 441 KAALIWILGEYAERIENAL------ELLESFLENFKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred HHHHHHHHhhhhhccCcHH------HHHHHHHhhcccchHHHHHHHHHHHHHHHhc
Confidence 8888888887654322211 1233444455566677777777766666544
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.11 Score=67.67 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=139.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
+-++.++.+..+- +|..|+..+-.++- .++. -..+++.|..-|.++|+.+|-.|+..++.|+..+|.+.-.+
T Consensus 147 ~Dv~tLL~sskpY-vRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY-VRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHhcCchH-HHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 3455677776664 88888877776632 2211 12467889999999999999999999999999988776554
Q ss_pred ccccHHHHHhhhcCCC-hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHHH--HHhcCC
Q 000145 472 KREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLW--ILCCHS 547 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL~--nLa~~s 547 (2054)
-|.+..++.+++ .=+-..-+..+++|+...+... ...+++|..++++.+. .+...+..++- ++....
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 377888777554 4466677788888877444322 3467888888877532 22222222221 333221
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch---hhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS---ATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~---~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~ 621 (2054)
.+..+.+ .=+++.|-.++.+.++.+++-+.-+++.+....-. .--..+++.|.+.|+.++..+.+.|-.+..
T Consensus 291 ~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 291 SDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 1111111 22566777788999999999999999999866321 123457888999999999887777665543
No 95
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.88 Score=60.36 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=153.3
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~ 555 (2054)
.+-+-.++++..+-+...++.++.++...+.. . +. .++..|--+|.++....|-.|.++|..++...+.. +
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v- 317 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---V- 317 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---c-
Confidence 34456678888888999999999888653222 1 11 14555656678888999999999999987632210 0
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHH---hcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLAL---LLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~L---L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.-+=.-|-.+..+.+..+-..|..+|..-..... ...+.+...+ +.++..-+...+.++|.... +.+
T Consensus 318 -~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~k----- 388 (865)
T KOG1078|consen 318 -TVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PRK----- 388 (865)
T ss_pred -cccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cHH-----
Confidence 0000111112222222222222222222211100 0111111112 22333333334444443321 111
Q ss_pred hhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 632 GSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
..+.+.-|..+|+. +.-+-+...+.++..+...+++.+ +.++..|+....|.. -..-+.+.|+-|..-.
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce--~~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE--FTQIAVRILHLLGKEG 458 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc--chHHHHHHHHHHhccC
Confidence 11235556666654 345666666666666655444433 234566666665422 2334566667666522
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
|.. ..-...++.+.+.+.-.+.-+|.+|+.+|+++.. ++.. .+.....|.+++.+.++++|+.|...|
T Consensus 459 P~a------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 459 PKA------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred CCC------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 220 0112355666666666788899999999999973 3332 334555677899999999999999999
Q ss_pred HHhhhc
Q 000145 790 HQLLKH 795 (2054)
Q Consensus 790 ~nL~~~ 795 (2054)
.++-..
T Consensus 528 ~~l~~~ 533 (865)
T KOG1078|consen 528 KNLEEK 533 (865)
T ss_pred HHhhhh
Confidence 998843
No 96
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.06 E-value=0.003 Score=66.93 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=104.2
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
..|+.-+....+.+.|+.+.--|.|.+.++.++..+.+.+.+...+.-+...++...+.++..|+|+|.+ +.+...|.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~e 97 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHH
Confidence 4555555556566689999999999999999999999999999999999999999999999999999998 788999999
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
.+|+|..+..+.++.+.+...++..+..|+......|..+.
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 99999999999999999999999999999885444454443
No 97
>PRK14707 hypothetical protein; Provisional
Probab=96.99 E-value=4.5 Score=58.88 Aligned_cols=698 Identities=17% Similarity=0.139 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-C-CHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHHH
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-G-TPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLLS 132 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~-s~evr~~AA~vL-~~Ls~~ee~r~~v~~~GaIp~LV~ 132 (2054)
.+.+.+...|..+....+..++.+. ..+|-.++..+.. + +++++ +++..| ..++.+...+..+ ....+-..+.
T Consensus 179 ~~c~~aa~~la~~~~~~d~~~~~~~--~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~~~l~~~~-~~q~va~~lN 254 (2710)
T PRK14707 179 PDCQAVAPRFAALVASDDRLRSAMD--AQGVATVLNALCKWPDTPDCG-NAVSALAERLADESRLRNEL-KPQELGNALN 254 (2710)
T ss_pred chHHHHHHHHHHHhcCChhhhcccc--hHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCcHHHHHhC-ChHHHHHHHH
Confidence 3456666777666655566666663 4677777766643 4 45555 555555 6666664443333 3455666677
Q ss_pred hhcc-CCHHHHHHHHHHH-HHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHH-HHhcCCCchh
Q 000145 133 LLKS-ESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALR-NLCGDKDGYW 209 (2054)
Q Consensus 133 LL~s-ed~eVr~aAa~AL-~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~-nL~~~~e~r~ 209 (2054)
.|.. .+..+...++.+| ..++. +..-++.+ +.-.|.-.++-|..-. +..++..+...|. .|..+. .-.
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~-----~~~l~~al-~~q~vanalNalSKwp--d~~vc~~Aa~~la~rl~~d~-~l~ 325 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVD-----DPGLRKAL-DPINVTQALNALSKWA--DLPVCAEAAIALAERLADDP-ELC 325 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhh-----hHHHHHhc-CHHHHHHHHhhhhcCC--CchHHHHHHHHHHHHHhccH-hhh
Confidence 7766 5554444444444 44543 22223333 3333333344443222 2234444444443 333322 111
Q ss_pred HHHHhhCChHHHHhhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHh
Q 000145 210 RATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALS 287 (2054)
Q Consensus 210 ~aI~eaGGI~~LV~LL~s-~s-~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs 287 (2054)
. -.+.-++...+.-|+. ++ ..++..+..+-..++ .+++.++.+. ..++...++.+.+=++..+...++..|..=.
T Consensus 326 ~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l 402 (2710)
T PRK14707 326 K-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHV 402 (2710)
T ss_pred h-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHh
Confidence 1 1222244555555543 33 455555555555565 4444444443 4456666777764455555555555555444
Q ss_pred hccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHH-------HhcCchh-HHHHhhhhcCC-CCc
Q 000145 288 SKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALAN-------IYGGMPA-LVVYLGELSQS-PRL 357 (2054)
Q Consensus 288 ~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALan-------LsGgis~-lI~~L~elL~s-~~~ 357 (2054)
.+.++.++.+-. .++..+++.+.. |+.. ....+..+|+- ++..+.+ .|.....-+.. |+.
T Consensus 403 ~~d~~l~~~~~~-Q~van~lnalsKWPd~~---------~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~ 472 (2710)
T PRK14707 403 VDDLELRKGLDP-QGVSNALNALAKWPDLP---------ICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDT 472 (2710)
T ss_pred ccChhhhhhcch-hhHHHHHHHhhcCCcch---------hHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCC
Confidence 445788877754 444555555543 4322 22223333332 1112221 12222222221 222
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~L 437 (2054)
..+..+...|+-.+.+ ....++.|+...+...|-.+-|.++.......+...-+.+.......+.+...+....+
T Consensus 473 -p~c~~aa~~La~~l~~----~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~l 547 (2710)
T PRK14707 473 -PICGQTASALAARLAH----ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTL 547 (2710)
T ss_pred -hhHHHHHHHHHHHhcc----cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHH
Confidence 2222222223322221 12245677777888888888888875422222222222333333444444444444555
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
-.+.+..+....+.++..|..+..+.+..+..+ ...+|..++..+ +-++......++..|.......++.+..+- ..
T Consensus 548 nalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~-~q 625 (2710)
T PRK14707 548 KALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELD-PV 625 (2710)
T ss_pred HhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhcc-HH
Confidence 556666667777777777776655444444444 234566666644 455554444444444333332233322221 22
Q ss_pred CCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh-ccCChhHHHHHHHHHHHH-HHhhc---
Q 000145 517 GIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKL-IRAAD--- 590 (2054)
Q Consensus 517 aIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nL-s~~~e--- 590 (2054)
.+..++.-| +-++....+.++..|..-...+...+..+. ...|..+++-| |=.+.+....++..|..- .....
T Consensus 626 ~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~Lr~ 704 (2710)
T PRK14707 626 DVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTPVCAAAAGGMAERLAADPGLRK 704 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChhhHh
Confidence 233333333 334444555555555433222233333332 33445555444 334555566666666532 22211
Q ss_pred ---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHHHHHHHHHHHh
Q 000145 591 ---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEYAASVLADLF 665 (2054)
Q Consensus 591 ---~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre~Aa~ALanLa 665 (2054)
...+..++.-|+ =.+......+..+|+.-. ...+... ..+...+.-..|=.+.|=.+. .++..+...-..|.
T Consensus 705 al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL--~~~p~l~-~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa 781 (2710)
T PRK14707 705 ELNPVDVANALNALSKWPRTPVCAAVASALAARV--VAEPRLR-KAFDAQQVATALNALSKWPDNQACAAAANTLAERQL 781 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH--hcChhhh-hhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHh
Confidence 111111222221 122222223333332211 1111111 112222222223333333333 44444433333444
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
. ++..+..+--.++-..|-.+-+=.....-..|+.+|..-... .. ..+.. .+...|...++-|.. ++......|
T Consensus 782 ~-~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~-dp--~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~A 856 (2710)
T PRK14707 782 R-EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVAD-DP--RLREA-FDVQHVATVLNAMSKWPDNAVCAAA 856 (2710)
T ss_pred h-CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhc-Ch--hHHHh-cCHHHHHHHHHHhccCCCchHHHHH
Confidence 4 555555433222222222222222333344455555433321 11 33332 233344444444443 555666666
Q ss_pred HHHHHH-hhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 745 VAALAN-LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 745 l~AL~N-La~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+.+|.- |..+++.+..+-.++....|-.+-+=.+...+..|+.+|..-..+
T Consensus 857 A~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~ 908 (2710)
T PRK14707 857 AGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD 908 (2710)
T ss_pred HHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc
Confidence 666654 345777776664443333333343334556666677776665443
No 98
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.052 Score=71.47 Aligned_cols=435 Identities=16% Similarity=0.148 Sum_probs=233.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~ 514 (2054)
+-++......+-+.++-.=..+.+-+...++.. .+.++.++.=+.++++.+|..|++.++.+... . +.
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~----i~- 119 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--K----IT- 119 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--H----HH-
Confidence 445566666666655555566777666544322 24567777777788888998888887666441 1 11
Q ss_pred hCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----
Q 000145 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---- 590 (2054)
Q Consensus 515 aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---- 590 (2054)
.-...++.+.+++.++-+|..++-...++-.. ..+...+.|.++.|-+++.+.+|.+..+|..+|..+.....
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 12567889999999999999999999988543 24556678999999999999999999999999999987642
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 591 ----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
...+..++..+..-++--+..+..++..-. ..++.+. ...+..+...+.+.+..+...+..++.++..
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p~d~~ea-------~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYV-PKDSREA-------EDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-CCCchhH-------HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 123344555555444444444444444321 1111111 1235666667777777777777777777765
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHH
Q 000145 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746 (2054)
Q Consensus 667 ~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~ 746 (2054)
.... .....-...-++++.++.... .++--|.+-+.-+....+. +.....-.-.++.. +...++.+=+.
T Consensus 269 ~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-------~~~~~~~~Ff~kyn--DPiYvK~eKle 337 (734)
T KOG1061|consen 269 YLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-------ILKVEIKVFFCKYN--DPIYVKLEKLE 337 (734)
T ss_pred HHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-------HHHhHhHeeeeecC--CchhhHHHHHH
Confidence 3222 333333455566666666555 5444444333333322221 11111111111111 22345555555
Q ss_pred HHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCc
Q 000145 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2054)
Q Consensus 747 AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~ 826 (2054)
++.-++.+....+ .+..+..+-.+.+.+.-+++++|+++++..-+ +. .+.+..|++++....+..
T Consensus 338 il~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e------~~---~~cv~~lLell~~~~~yv 402 (734)
T KOG1061|consen 338 ILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE------QS---NDCVSILLELLETKVDYV 402 (734)
T ss_pred HHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh------hh---hhhHHHHHHHHhhcccce
Confidence 5555543222221 33445555555666666666666666665321 00 335555666655333222
Q ss_pred hhHHHHHHHHHHHhh--ccc-------CCC----------ccCCcccccc---cCCC---chHHHHHhhhcCChhHHHHH
Q 000145 827 TDVADALEVVALLAR--TKQ-------GLN----------FTYPPWAALA---EVPS---SIEPLVCCLAEGPPPLQDKA 881 (2054)
Q Consensus 827 ~~~~~AL~ALa~La~--~~~-------~~~----------~i~~~~~~~~---~~~~---~L~~Lv~ll~~~~~~vq~~A 881 (2054)
..++...+..+-+ ++. .+. +..-.|..+. ..+. -++.+++-..+++..+|-.=
T Consensus 403 --vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 403 --VQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred --eeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHH
Confidence 2233333333322 000 000 0001222222 1222 24444555556666666555
Q ss_pred HHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhh
Q 000145 882 IEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926 (2054)
Q Consensus 882 i~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~ 926 (2054)
..+..+++...|. +++...-.-|..++-+++.+++|--|
T Consensus 481 Lta~ik~Fl~~p~------~tq~~l~~vL~~~~~d~~~~dlrDr~ 519 (734)
T KOG1061|consen 481 LTAAIKLFLKKPT------ETQELLQGVLPLATADTDNPDLRDRG 519 (734)
T ss_pred HHHHHHHHhcCCc------cHHHHHHHHHhhhhccccChhhhhhH
Confidence 5555555554442 22333345566666677777776554
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.91 E-value=0.13 Score=64.85 Aligned_cols=273 Identities=16% Similarity=0.126 Sum_probs=176.9
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
.+.+..++-+++.++|..+.++++.+.. +.+.-..+.+.+.--.++.-|..+ ...-|++|...++.+.......+..
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3444444445558899999999999987 456666666666545555656543 5566889999888886532221111
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
..+.+.+++.+..+.+...+..|..+|..++-. + ++ .+
T Consensus 106 --~~~vvralvaiae~~~D~lr~~cletL~El~l~----------------~--------------------P~----lv 143 (371)
T PF14664_consen 106 --PRGVVRALVAIAEHEDDRLRRICLETLCELALL----------------N--------------------PE----LV 143 (371)
T ss_pred --CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh----------------C--------------------HH----HH
Confidence 345677777777777777777777777777533 1 11 13
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-------CH--HHHHHHHHHHH
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-------TQ--MVATQSARALG 704 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-------s~--~vr~~AA~AL~ 704 (2054)
...||+..|++.+-++..+..+..+.++.++.. +|..|..+...--+..++.-+.+- +. +.-..++.++.
T Consensus 144 ~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~ 222 (371)
T PF14664_consen 144 AECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIS 222 (371)
T ss_pred HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 457889999998887777788899999999987 677777655433344444333221 22 23445677777
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Ch---------------H-H---------
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP---------------D-I--------- 757 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~---------------e-~--------- 757 (2054)
.+.++-+. -..-..-+...++.|++.|..+++++++..+..+..+.. .| . .
T Consensus 223 ~~LrsW~G--Ll~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (371)
T PF14664_consen 223 TLLRSWPG--LLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSG 300 (371)
T ss_pred HHHhcCCc--eeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccc
Confidence 77652222 010011122478889999999999999999999988811 00 0 0
Q ss_pred --------------H------------HHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhh
Q 000145 758 --------------A------------AEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2054)
Q Consensus 758 --------------r------------~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~ 794 (2054)
+ ..+++.|.++.|+++..+. ++.+..+|...|+++..
T Consensus 301 ~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 301 FAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred ccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 0 1134677888888888777 78888888888877654
No 100
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.91 E-value=0.0019 Score=63.64 Aligned_cols=86 Identities=30% Similarity=0.404 Sum_probs=70.8
Q ss_pred hHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 639 LRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 639 I~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
++.|++.+ +++++.+|..++.+|.++.. ..+++.|.++++++++.+|..|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 46788888 78899999999999996643 3568999999999999999999999998852
Q ss_pred HHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHH
Q 000145 718 MSYIAEGDVKPLIKLAKTS-SIDAAETAVAALA 749 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~ 749 (2054)
...++.|.+++.++ +..++..|+.+|+
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23788999988774 5567889998885
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.89 E-value=0.0019 Score=63.68 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=71.4
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHH
Q 000145 681 VNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2054)
Q Consensus 681 V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~ 759 (2054)
++.|++.+ ++.++.+|..++++|+++.. ..+++.|+.+++++++.++..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57889988 88899999999999996632 136899999999999999999999999873
Q ss_pred HHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHH
Q 000145 760 EVLLEDVVSALTRVLAEG-TSEGKKNASRALH 790 (2054)
Q Consensus 760 ~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~ 790 (2054)
.+..++.|.+++.++ +..+|..|+++|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 455889999988776 5667999998874
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.28 Score=58.78 Aligned_cols=357 Identities=15% Similarity=0.148 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHhhcChh---hhHH--HhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHH--
Q 000145 406 LVQERVLEAMASLYGNIF---LSQW--VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL-- 478 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~---~~~~--L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~-- 478 (2054)
.++.-++..++.+..+.+ +... +++.+..+.++..+..++.++-..|...+..++.. +..-..|.+.+....
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHH
Confidence 488888888888865543 2222 34667889999999999999999999999999877 444455555554433
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~ 557 (2054)
+..+...-+.-+|......+..+.+-+++........|.+..|..-|+. .|.-++.++.+....|.. .+..++.+.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhhcchh
Confidence 3333333455567777777777777666666666677777777766665 477788888898888876 45668888889
Q ss_pred CChHHHHHhhc--cCChhHHHHHHHHHHHHHHhh------c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 558 GAVPAFLWLLK--SGGPKGQDASAMALTKLIRAA------D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 558 GaI~aLV~LLk--S~~~evq~~AA~AL~nLs~~~------e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
|.|+.++.+.. +.+|--+..+....+.+.... + .-.+....++....+++....+..++|.+.+.
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 99999988775 355655555655555554331 1 11344556777888899899999999988766
Q ss_pred hcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~ 701 (2054)
....+...+. .....+.++.-. ......-++.+..+|.+++..-..-...+ .+|....+....
T Consensus 335 teGadlllkT--gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi-------------tDgkaeerlrcl- 398 (524)
T KOG4413|consen 335 TEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI-------------TDGKAEERLRCL- 398 (524)
T ss_pred cchhHHHhcc--CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc-------------cccHHHHHHHHH-
Confidence 5555443322 111222333222 22233445667777777765211111111 122222121111
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHHHcCC---
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL-LEDVVSALTRVLAEG--- 777 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv-~~g~I~~LV~LL~s~--- 777 (2054)
.....+.+.. ..-.......+..+.++++-.+..++..++..|=....|. +++.+.-.++--.+.
T Consensus 399 ifdaaaqstk-----------ldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKa 467 (524)
T KOG4413|consen 399 IFDAAAQSTK-----------LDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKA 467 (524)
T ss_pred HHHHHhhccC-----------CChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHH
Confidence 0111111111 1123335566777889999999999999987776666655 455554444322221
Q ss_pred CHHHHHHHHHHHHH
Q 000145 778 TSEGKKNASRALHQ 791 (2054)
Q Consensus 778 ~~evr~~Aa~AL~n 791 (2054)
..+.|...+.++++
T Consensus 468 akdAkYeccKAiae 481 (524)
T KOG4413|consen 468 AKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 23456666666665
No 103
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.071 Score=62.72 Aligned_cols=203 Identities=17% Similarity=0.124 Sum_probs=134.9
Q ss_pred cccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 635 ANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
...+++.|++.+... .+-+|-.|+.+|.++.. .+.++.+.++.++....+++-+..|+.++-+....
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 445677777777654 46677777777777763 45556666666666666776666666666441100
Q ss_pred cc-chhHHH--------HhcCChhhHHhhhhcCCHH-H-HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 713 KT-TNKMSY--------IAEGDVKPLIKLAKTSSID-A-AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 713 ~d-~~r~~I--------~~~gaV~~Lv~LL~s~d~~-V-re~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
.. .+.... ...+-+..|-..|.+.+.. . |..|...|.|+.. +..|..|++-+..++...
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHH
Confidence 00 000000 0112233344444443222 2 3357777776642 345777888888889999
Q ss_pred HHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCC
Q 000145 782 KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPS 861 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~ 861 (2054)
|..++.++++|-+. .+++.|...|...+++.=.+.+|+.||+.++. +.
T Consensus 204 rhEvAfVfGQl~s~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------------e~ 251 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------------ED 251 (289)
T ss_pred HHHHHHHHhhccch--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------------HH
Confidence 99999999998873 36788888888888887889999999999873 33
Q ss_pred chHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 862 SIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 862 ~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
.++.|.....++.+.++.....+|.-+-.
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998888876543
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.3 Score=68.24 Aligned_cols=423 Identities=15% Similarity=0.129 Sum_probs=213.1
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc--ChhhhH
Q 000145 349 GELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG--NIFLSQ 426 (2054)
Q Consensus 349 ~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~--n~~~~~ 426 (2054)
....-+++.....|..++-|.+.-.. . ...........+...+..++...+. .+|+-|.+.|+-+|+ +...++
T Consensus 824 ~~~~~s~nph~R~A~~VWLLs~vq~l-~---~~~~v~l~~~eI~~aF~~~Lsd~dE-f~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 824 DTLLTSPNPHERQAGCVWLLSLVQYL-G---QQPEVVLMLKEIQEAFSHLLSDNDE-FSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHh-c---cCchhhhccHHHHHHHHHHhcccHH-HHHHHHhcCceEEEecCCchhHH
Confidence 33344555555556666666554222 1 0111222333454666777777654 499999999988864 445544
Q ss_pred HHhhcchHHHHHHHhccCCHH-------H---------------HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc
Q 000145 427 WVSHAEAKKVLIGLITMATAD-------V---------------REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~e-------v---------------q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~ 484 (2054)
.++ ..|+.-+..+... . ....-.-|++++.+ +.+..-|-.++++.+
T Consensus 899 ~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLAN 966 (1702)
T ss_pred HHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhh
Confidence 443 3333333221100 0 00111122233222 111112223333333
Q ss_pred CC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 485 LS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 485 s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
+. .=.-|..|+..+..++.... .+....-..-||.|.+.=-++++.+|..-..+...|..++...-+... ....+-|
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eL 1044 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDEL 1044 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHH
Confidence 22 11246677888888876431 122222234677777777788999999888888888776433222111 4556667
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHhhch--------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRAADS--------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~~e~--------~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+.-+.+...++|+.++-||..|-+..+. +.+..+.+.+.+-++.|++.+..+...++...-..-........
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 7777788889999999999999887431 22333444444555666666555555444321000000111111
Q ss_pred ccchHHHHHHhc-----cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH-HHHHHHHhhCC
Q 000145 636 NKGLRSLVQVLN-----SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ-SARALGALSRP 709 (2054)
Q Consensus 636 ~GaI~~LV~LLk-----s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~-AA~AL~nLs~s 709 (2054)
..++..+...+- +.-+++|..+...+..|+...+... .---...++.|++....-.+.+-.. ++++ .|.-.
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~- 1201 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET- 1201 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH-
Confidence 223444444332 3458999999999999987433311 1112345666666666544443322 2222 22111
Q ss_pred CCcccchhHHHHh--------------------cCChhhHHhhhhcC-CHHHHHHHHHHHHHhhCChHHHHHHH--hcCc
Q 000145 710 TKTKTTNKMSYIA--------------------EGDVKPLIKLAKTS-SIDAAETAVAALANLLSDPDIAAEVL--LEDV 766 (2054)
Q Consensus 710 ~~~~d~~r~~I~~--------------------~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~ 766 (2054)
...|..|..+.. .+.+|.++++++.+ .-..+..++..++-|+.. .-.++. ..+.
T Consensus 1202 -ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r--~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1202 -EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR--LGSEMTPYSGKL 1278 (1702)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH--hccccCcchhHH
Confidence 001122221111 12444455554442 122233344444444320 000000 1123
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..+...+.+.++.+++.-+.+++.|..-+
T Consensus 1279 l~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 556666677889999999999999998754
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.028 Score=72.14 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=139.8
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh--cchHHHHhhhhccc
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA--LQEDLVQKGSAANK 637 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~--~~~d~~~~~l~~~G 637 (2054)
.|..+..+.++.++..|+.+|..|+..-+ .......++++++++..|+..+.+.+......- +.+....+.-....
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~ 281 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA 281 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH
Confidence 36666677788888888888877765422 224566788888888888887777666655432 11111111112234
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-Hh--hCC-----
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-AL--SRP----- 709 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~-nL--s~s----- 709 (2054)
+...+.+.+++.+..+|-.|+.+|..+...+.+......+...+. -++. ..........+. +- +++
T Consensus 282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRR--kr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRR--KRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhh--hhhcccchHHHHhcCCcccCccccc
Confidence 677888888888889999999988888664444443333322222 1111 111111111221 11 110
Q ss_pred -C--CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 000145 710 -T--KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 710 -~--~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~A 785 (2054)
. .+.|.....++..|+-..++.-|.++=-+||.+|+..++.|+. .|.... ..+..|++++.++...+|..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 0 0123344567888888888888888878888888888888876 455433 356678888888888888888
Q ss_pred HHHHHHhhhcCC
Q 000145 786 SRALHQLLKHFP 797 (2054)
Q Consensus 786 a~AL~nL~~~~~ 797 (2054)
+.+|..+..+-.
T Consensus 431 i~aL~~Is~~l~ 442 (823)
T KOG2259|consen 431 IFALTMISVHLA 442 (823)
T ss_pred HHHHHHHHHHhe
Confidence 888888887643
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.66 E-value=0.0035 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 754 DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 754 ~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
+++.+..+++.|++|+|+++|.+.++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
No 107
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.27 Score=59.01 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=123.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~-~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
...++.+|.+.+|.++..|...+..++.. ..+.-... ...++.+.+++.+.++ .+.|+.+|.|++. +...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-----~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-----KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-----hHHHH
Confidence 35688999999999999999999888765 22222222 2568889999988655 6788999999996 45557
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHh-----hCChHHHHhhhccCCH---HHHHHH
Q 000145 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-----AGGVDIIVGLLSSDNA---AAQSNA 236 (2054)
Q Consensus 165 e~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~e-----aGGI~~LV~LL~s~s~---evq~~A 236 (2054)
+.+.+. .+..++..+..+. ..+....+..|.|+++.++.....+.. ..|+..++....+.+- .--.+.
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~---~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQ---SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcc---cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 777766 7777888776553 346778889999999987654332221 1344444444333221 233455
Q ss_pred HHHHHHHHhhcCCCcchhcccc-hHHHHHHHhccCCChhHH-HHHHHHHHHHhhccHHHHHHHH
Q 000145 237 ASLLARLMLAFGDSIPTVIDSG-AVKALVQLVGQNNDISVR-ASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 237 ~~aL~nLs~~~~~~r~~i~~sG-aL~~LL~LL~s~~d~~Vr-~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
+.++.+|+ ..+..|..+.+.. ....-+..+.+ .+..+| ...+++|+|++++ ......+.
T Consensus 153 A~vf~nls-~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd-~~~h~~lL 213 (353)
T KOG2973|consen 153 APVFANLS-QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFD-AKLHEVLL 213 (353)
T ss_pred HHHHHHHh-hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhcc-chhHHHHh
Confidence 66777777 3344445444443 22222333333 344444 3566788888886 44444444
No 108
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.15 Score=61.21 Aligned_cols=285 Identities=17% Similarity=0.127 Sum_probs=160.5
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e 556 (2054)
..++.++.+.++.+|..|+..+..++.. +.....-.+...++.+.++++..++ -+.|+.+|.|++.+ +..++.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 3578899999999999999999888774 1111111123456667788877766 67889999999984 556665555
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchh----------hHHHHHHHhc---CCCcc---hHHHHHHHHHHHH
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA----------TINQLLALLL---GDSPS---SKAHVIKVLGHVL 620 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~----------~Ip~Lv~LL~---~~~~~---V~~~a~~AL~~La 620 (2054)
. .+..+++.+.+.....-...+..|.|+++.++.- .-..++++.. +.+.. -..+.+-.+.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 7777788888877777888899999998774200 0012222222 11111 1122333333333
Q ss_pred hhhcchHHHHhhhhccc--chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 621 TMALQEDLVQKGSAANK--GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 621 ~~~~~~d~~~~~l~~~G--aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
.. +.-+..+.+.. ..+.+..+-..++.--|...++.|.|.|. +......+.. ..+.-|..+|
T Consensus 161 ~~----~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~-e~~~lLp~iL---------- 224 (353)
T KOG2973|consen 161 QF----EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLD-ESINLLPAIL---------- 224 (353)
T ss_pred hh----hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc-cchhHHHHhc-chHHHHHHHH----------
Confidence 22 22222222222 23344444442333445677888999887 5555555544 2222222222
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh-----cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~-----s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~L 773 (2054)
.-++.. .+.++.. -.-++.=+++|. .++++++..-+.+|.-|+.....|+.+...| +.++++-
T Consensus 225 -----lPlagp-ee~sEEd-----m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kg-vYpilRE 292 (353)
T KOG2973|consen 225 -----LPLAGP-EELSEED-----MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKG-VYPILRE 292 (353)
T ss_pred -----hhcCCc-cccCHHH-----HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcC-chHHHHH
Confidence 222220 0000111 112222225554 3689999999999999988777787776655 4555554
Q ss_pred HcC--CCHHHHHHHHHHHHHhhh
Q 000145 774 LAE--GTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 774 L~s--~~~evr~~Aa~AL~nL~~ 794 (2054)
++. .++++++++-....-|..
T Consensus 293 lhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 293 LHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHh
Confidence 443 356666544444433443
No 109
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.53 Score=58.78 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC------ch----hHHHHHhcCCh
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD------ED----LRLKVLLGGCI 127 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~------ee----~r~~v~~~GaI 127 (2054)
-......+..++..++-.-.++. .++|+.|+.+|.+++.++-......|..+... .+ ....++..+.+
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lve--ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVE--LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHH--hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 45566777777777766655553 58999999999999999999999999988643 12 22344556888
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000145 128 PPLLSLLKSE------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2054)
Q Consensus 128 p~LV~LL~se------d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL 201 (2054)
+.|++-+..= +.+....+...+.|+... .+...+.+++.|.+.-|+.-+......+ .....+..+|.-+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~----r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLail 253 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEV----RPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAIL 253 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc----cHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHH
Confidence 8888888662 333455666777787753 4556778888888888777665543222 4566888999988
Q ss_pred hcCCCchhHHHHhhCChHHHHhhhcc---CC---HHHHHHHHHHHHHHHh--hcCCCcchhcccchHHHHHHHhccCCCh
Q 000145 202 CGDKDGYWRATLEAGGVDIIVGLLSS---DN---AAAQSNAASLLARLML--AFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2054)
Q Consensus 202 ~~~~e~r~~aI~eaGGI~~LV~LL~s---~s---~evq~~A~~aL~nLs~--~~~~~r~~i~~sGaL~~LL~LL~s~~d~ 273 (2054)
..+...+...+-.-.|+..+++-+.- .+ .+-++..-.++.+||. ..+.++..+....++.-..-+++. ..
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KK 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HH
Confidence 88877666777788899999887753 12 3345555566666663 566677777776666665555552 23
Q ss_pred hHHHHHHHHHHHHhhccH--HHHHHHHhcCCHHHHHHhhc-CCchh
Q 000145 274 SVRASAADALEALSSKSI--KAKKAVVAADGVPVLIGAIV-APSKE 316 (2054)
Q Consensus 274 ~Vr~~Aa~aL~nLs~~s~--e~Rk~I~eaggL~~LIeLL~-s~s~e 316 (2054)
..+..+..+|-....+.+ .++..+.+..|+.++..+.- .|++.
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~ 377 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKR 377 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccch
Confidence 456677888888777544 78888999999999976543 44433
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.38 E-value=0.018 Score=67.30 Aligned_cols=185 Identities=18% Similarity=0.100 Sum_probs=112.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhc--HHHHHHHhh-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000145 49 HANMSSPQERELITMRILTIAKAK--KEARLLIGS-HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2054)
Q Consensus 49 ~~ssss~~ere~AL~~L~~La~~~--d~ar~~I~~-~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~G 125 (2054)
+.++.+.++|..++..|..+.... ......+.+ -...++.+...+.+....+...|+.++..++..-...-.-....
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 566778899999999999998877 222232222 01234566666666677888899999988865433322222335
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc-HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV-VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~-Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
.+|.|++.+.+....+++.|..+|..+..+.. . .. .. ++.+.....+++ +.++..++..+..+...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~-~~-----~~~~~~l~~~~~~Kn---~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS----Y-SP-----KILLEILSQGLKSKN---PQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----c-HH-----HHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 78999999999888999999999999997421 0 01 12 455555565554 66888888888888776
Q ss_pred CCchhHHHHh----hCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 205 KDGYWRATLE----AGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 205 ~e~r~~aI~e----aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
.......+.. ...++.+...+.+.++++|..|-.+++.+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 5411111111 22567788888999999999999999888743
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.35 E-value=0.0052 Score=52.58 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=38.1
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+++++..+++.|++++|+++|+++++.+++.|+++|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 112
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.095 Score=70.25 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhhcChhhhHHHhh----cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 408 QERVLEAMASLYGNIFLSQWVSH----AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 408 q~~Aa~AL~~L~~n~~~~~~L~~----~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
|.+=.++|.-|.+--+...|.+. -|..++.++||+++-.+.+...+..|.++-.-++..+..+++.+|-..+++.+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 44555666666555555555433 37789999999999999999999999887665577777888888888888887
Q ss_pred cC-C--ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000145 484 GL-S--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2054)
Q Consensus 484 ~s-~--d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~Ga 559 (2054)
.. + +++.|..|+..|..++..-........+.+.+..=+..|+++ .+-.|.|.+-+|+.|=.+.++.|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 76 2 347888899999999985444455555555555555667775 6889999999999998887777776677899
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
.+.|..++++.-|++|..|..||+.+..... ...+...+.+ ++..+ ..++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l---~~~~~---------------~~E~~i~--- 702 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDL---DDERT---------------SIEDLII--- 702 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcc---hhhhh---------------hHHHHHH---
Confidence 9999999999999999999999998865411 0011111110 00000 0000000
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
.+.-.++.+++.+++-+|...+-+|..+..++..
T Consensus 703 ---~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 703 ---KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred ---hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 1124677778888888888888888888765433
No 113
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=3.5 Score=54.34 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=127.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCCh
Q 000145 48 LHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCI 127 (2054)
Q Consensus 48 L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaI 127 (2054)
|.++++..-.|+.|.-+|..+-+..++... ..+=...++.+|.+.+-.+...+...+-.+++....-.+....-++
T Consensus 155 LvS~~~~~~vkqkaALclL~L~r~spDl~~----~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 155 LVSGSSMDYVKQKAALCLLRLFRKSPDLVN----PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HhCCcchHHHHHHHHHHHHHHHhcCccccC----hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 344455555667777777777666543311 1234667788887777666666777776666543332232222233
Q ss_pred HHHHHhhcc-------------CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHH
Q 000145 128 PPLLSLLKS-------------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFV 194 (2054)
Q Consensus 128 p~LV~LL~s-------------ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~A 194 (2054)
..|.++... +.|..+...++.|.+.=. ..+...+..+.+ +...++...+...+....-..+|
T Consensus 231 s~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na 305 (938)
T KOG1077|consen 231 SRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNA 305 (938)
T ss_pred HHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHH--HHHHHHhccccCccccchHhhhh
Confidence 333333221 246677777777776632 223334444433 33444443332211111111111
Q ss_pred ----HHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC
Q 000145 195 ----TGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270 (2054)
Q Consensus 195 ----l~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~ 270 (2054)
+--..++..+-+.....+.+ ++..|.++|.+...++|--+...++.|+.. +.....+... .+.++..|+..
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccc
Confidence 22223444443333333333 677788888888888888888888888843 2223333222 67788888878
Q ss_pred CChhHHHHHHHHHHHHhhc
Q 000145 271 NDISVRASAADALEALSSK 289 (2054)
Q Consensus 271 ~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
.|.++|..+.+.|..++-.
T Consensus 381 rDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred cchHHHHHHHHHHHHHhch
Confidence 8999999999999988874
No 114
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=4.6 Score=53.29 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=69.2
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
|-+++.+...+++..+.+.+..|+......|.++.- .+.++..|+. .|-.+|..|+..|..+|. .++...
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h------~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~- 404 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH------QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQ- 404 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH------HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHH-
Confidence 334455555667777777777777665555554432 7788889984 588999999999999985 455544
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
++..|++.|.+.+..+|+.-+.-.+-|+.
T Consensus 405 ----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 ----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred ----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 35678888888888888776655555543
No 115
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=7.9 Score=51.95 Aligned_cols=455 Identities=13% Similarity=0.097 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhcChhhhHHHhhcc---hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 409 ERVLEAMASLYGNIFLSQWVSHAE---AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 409 ~~Aa~AL~~L~~n~~~~~~L~~~g---~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
..+...|.++..--.-++.+.+.+ ..-.+.+++++.+...++..=.++..++.-..+.- -+...+..-...
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi------ivtsslmkD~t~ 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI------IVTSSLMKDMTG 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh------hhhHHHHhhccC
Confidence 455556666532211122233332 33446677888887777766667777766533221 123344444445
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc----CCHHHHHHH-HHHHHHHhcCChhHHHHHHHcCCh
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA----GSQKAREVA-AHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s----~s~~Vre~A-A~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.++.+|-.|++.|+.+.... -+...-+.++. ..+.+...| +..+..|....+..++.. .+..
T Consensus 112 ~~d~yr~~AiR~L~~I~d~~-----------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~--neiq 178 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDGT-----------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA--NEVQ 178 (865)
T ss_pred CCcchhHHHHHHHHhhcCcc-----------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH--Hhhh
Confidence 56678888888888887631 12222222222 222222222 233444443333333322 1111
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHH--HHHHhhhcchHHHHhhhhcccc
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL--GHVLTMALQEDLVQKGSAANKG 638 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL--~~La~~~~~~d~~~~~l~~~Ga 638 (2054)
+ -..+.+..+|+++...|..+-.++. -++..++..+..+. ++...+.|+ +..+...... .......
T Consensus 179 e----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-----~~~~s~~ 246 (865)
T KOG1078|consen 179 E----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-----QQADSPL 246 (865)
T ss_pred h----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-----ccchhhH
Confidence 1 1223344678888888887754422 23333333332211 111111111 1111111110 0011122
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc------
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT------ 712 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~------ 712 (2054)
.+-+-..+++..+.+...|++++.++...+... + ...+..|-.++.+.....|-.|.+.|..++...|+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 344445666677888888888888875432211 1 11667777777777778888888888888764444
Q ss_pred -------ccchhHHHHhcCChhhHHhhhhcCCHHHHHH----HHHHHHHhhCCh------HHHH-----HHHhcCcHHHH
Q 000145 713 -------KTTNKMSYIAEGDVKPLIKLAKTSSIDAAET----AVAALANLLSDP------DIAA-----EVLLEDVVSAL 770 (2054)
Q Consensus 713 -------~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~----Al~AL~NLa~~~------e~r~-----~Iv~~g~I~~L 770 (2054)
.|.+|. =....+-.+|+.+...-... .....++++.+- ..+. .....+.+..|
T Consensus 322 ~elE~lItd~Nrs-----Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 322 LDLESLITDSNRS-----IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred hhHHhhhcccccc-----hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 111221 01122233344333222221 222222221100 0000 01122345566
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCcc
Q 000145 771 TRVLAE-GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFT 849 (2054)
Q Consensus 771 V~LL~s-~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i 849 (2054)
-++|++ |.-+-++..+.++..+....|-. ...+...|+....+-+. ...+.+.|..|..... +.
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--------Ke~~L~~LCefIEDce~----~~i~~rILhlLG~EgP---~a 461 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDS--------KERGLEHLCEFIEDCEF----TQIAVRILHLLGKEGP---KA 461 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcch--------hhHHHHHHHHHHHhccc----hHHHHHHHHHHhccCC---CC
Confidence 666554 45677888888888877744321 13456667777754332 4467777777775321 11
Q ss_pred CCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHH
Q 000145 850 YPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL 929 (2054)
Q Consensus 850 ~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~ 929 (2054)
. +....+..+-....-.+..+|.+|+.+|.++....+. -...|-.+++|.++...+|||--+|..
T Consensus 462 ~-------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--------l~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 462 P-------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--------LLPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred C-------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--------ccccHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 1123355666667778888999999999998744332 225688999999999999999999988
Q ss_pred HHHhc
Q 000145 930 LICAA 934 (2054)
Q Consensus 930 ~i~~~ 934 (2054)
+-.+.
T Consensus 527 l~~l~ 531 (865)
T KOG1078|consen 527 LKNLE 531 (865)
T ss_pred HHHhh
Confidence 86443
No 116
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.07 E-value=0.55 Score=59.36 Aligned_cols=236 Identities=18% Similarity=0.187 Sum_probs=158.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCcccch
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.+.+..++-+++.++|..+.+++.++.. +++....+.+.++---++.-|..+ ++.=|++|.+-++.+..... +
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~---~- 101 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK---G- 101 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC---C-
Confidence 4444444555569999999999999988 777778888877666666666433 44456788888877765211 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
....-.++++.++.+..+.++..+..|+.+|+-++- +|+ -+...||+..|.+.+.++..++.+..+.++..+..+
T Consensus 102 -~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 102 -PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred -cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 112346789999999999999999999999999986 666 456789999999999888777999999999999986
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhccC-----CCCc--hhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHH
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNAM-----DMNG--TDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~sg-----~~~~--~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ 868 (2054)
... +..+.....+..++.-+.+. +.+. .....+..++..+-++=+|. .+.. ...-..+..|+.
T Consensus 178 p~t----R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-----l~l~-~~~~~~lksLv~ 247 (371)
T PF14664_consen 178 PRT----RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-----LYLS-MNDFRGLKSLVD 247 (371)
T ss_pred cch----hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-----eeee-cCCchHHHHHHH
Confidence 432 22222222233333333322 1111 12333334444433321110 0111 112257999999
Q ss_pred hhhcCChhHHHHHHHHHHHhhccCC
Q 000145 869 CLAEGPPPLQDKAIEILSRLCGDQP 893 (2054)
Q Consensus 869 ll~~~~~~vq~~Ai~iL~~L~~~~~ 893 (2054)
++..+++.+|..-++++..++.-.+
T Consensus 248 ~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 248 SLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999998664
No 117
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.7 Score=60.80 Aligned_cols=309 Identities=16% Similarity=0.167 Sum_probs=181.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHh--hhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS--LLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~--LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++.+...+.+....++++|.-++..+-.... ..+. . .|.|+. +....++..+++|-..|...-. + |
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~---E-r-- 203 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--D-APELIESFLLTEQDPSCKRNAFLMLFTTDP---E-R-- 203 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--C-hHHHHHHHHHhccCchhHHHHHHHHHhcCH---H-H--
Confidence 4455556677778899999877766544311 1121 1 233333 4456678888888777655432 1 1
Q ss_pred HHhhCCCchHhhhh---hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 512 ITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 512 I~~aGaIp~LV~LL---~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
++.-|.... .+-++..+-...+.++.-+..++.- +..-+..+..+|.+.++.+++.++.+|.+++.+
T Consensus 204 -----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 204 -----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred -----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 111111111 1113455556666666666544432 234577888999999999999999999999877
Q ss_pred hc--hhhHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHh
Q 000145 589 AD--SATINQLLALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 589 ~e--~~~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLa 665 (2054)
+. ..+...+++++.. .+.+++.-...-|..+. ..+... -.|.+-.++.++.+++-++|..+......|.
T Consensus 274 p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~i------l~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 274 PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKI------LQGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHH------HHHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 54 2234556666543 33334433333333222 111111 1234566677888899999999999888887
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhc-----------cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLT-----------SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK 734 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~-----------dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~ 734 (2054)
+. .-+..++.+|+ +.+..-|..-.++++..+..+++ ..+.+|+.|++.+.
T Consensus 346 ss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--------~aatvV~~ll~fis 406 (948)
T KOG1058|consen 346 SS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--------VAATVVSLLLDFIS 406 (948)
T ss_pred hh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--------HHHHHHHHHHHHhc
Confidence 62 12233333332 12234466677888888775555 33458899999998
Q ss_pred cCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhhcC
Q 000145 735 TSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 735 s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~-s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+.++......+..+..... .|..|..|+ ..|+.-+. -.+.++.+.|.|.++..|...
T Consensus 407 D~N~~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 407 DSNEAAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 8776554444333333222 455555443 34443332 246788899999999988754
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.77 E-value=0.08 Score=61.92 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=111.9
Q ss_pred CCChhhhHHHHHHHHHHhhhc--cchhhHHHhh--CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh-hHHHHHHHcCC
Q 000145 485 LSSEQHQEYAVQLIAILTEQV--DDSKWAITAA--GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE-DIRACVESAGA 559 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s--~e~r~~I~~a--GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd-~~r~~I~e~Ga 559 (2054)
+.+=+.|..++.-|..+..++ .+....+... ..+..+...+.+....+...|+.++..++..-. ..... -...
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHHH
Confidence 445567888888888888755 2222222221 345566666776677788889988888865311 12222 1446
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhc--hhh-HHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhhc
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD--SAT-INQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSAA 635 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~~~-Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~-~~d~~~~~l~~ 635 (2054)
+|.|+..+.++...++..+..+|..+..... ... .+.+.....+.++.++..+...+..+....+ ..........-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 8899999999999999999999999987754 445 6777778889999999999988888765433 11111110001
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
...++.+...+.+.++++|+.|-.++..+....++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 23577888899999999999999999999764333
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.74 E-value=1.3 Score=57.46 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=149.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcc-CchhHHHHHhc
Q 000145 51 NMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG-----TPLAKVNVAATLSVLCK-DEDLRLKVLLG 124 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~-----s~evr~~AA~vL~~Ls~-~ee~r~~v~~~ 124 (2054)
...+......|++||.|....++.+|+.+.+ .|+.+.++..|+.. ++++..-..++|..++. ..+.+.++.+.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3456677899999999999999999999998 89999999999987 78999999999988875 45667666654
Q ss_pred -CChHHHHHhhcc-----------------CCHHHHHHHHHHHHHHhcCCCCCCh-hHHHHHHHcCcHHHHHHhh--CCC
Q 000145 125 -GCIPPLLSLLKS-----------------ESTDTRKAAAEALYEVSSGGLSDDH-VGMKIFVTEGVVPTLWDQL--NPK 183 (2054)
Q Consensus 125 -GaIp~LV~LL~s-----------------ed~eVr~aAa~AL~nLS~~~~nk~~-~~re~Iv~aG~Vp~Lv~LL--~s~ 183 (2054)
+++..+...|.. .+.+....+++.+.|+..+...... .....+. ..++.+..++ ...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~--~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIP--HLVSILRRLLPPPPS 198 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHH--HHHHHHHHHhccCCC
Confidence 777777765532 1445677888999999875321111 1111111 1334444442 111
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCch-------hHH----HHhhCChHHHHhhhccC----C----HHHHHHHHHHHHHHH
Q 000145 184 NKQDNVVQGFVTGALRNLCGDKDGY-------WRA----TLEAGGVDIIVGLLSSD----N----AAAQSNAASLLARLM 244 (2054)
Q Consensus 184 s~~d~~V~e~Al~aL~nL~~~~e~r-------~~a----I~eaGGI~~LV~LL~s~----s----~evq~~A~~aL~nLs 244 (2054)
...-.....+++.+|.|+--..... ... -.....+..|+.+|... . .+.-...+.+|.+++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 1122346778899999883211000 000 01112456666666542 1 244556677777777
Q ss_pred hhcCCCcchhc----------------ccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc
Q 000145 245 LAFGDSIPTVI----------------DSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2054)
Q Consensus 245 ~~~~~~r~~i~----------------~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
..+...|+.+. ....-..|++++.+.. ..++..+...+..|+..
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKE 338 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhh
Confidence 55444443321 2235677888888543 78898888888888774
No 120
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.68 E-value=1.8 Score=54.58 Aligned_cols=446 Identities=14% Similarity=0.115 Sum_probs=224.3
Q ss_pred cccHHHHHh-hhcCCChhhhHHHHHHHHHHhhhccchhhHHHh---hCCCc--------------hHhhhh-hcCCHHHH
Q 000145 473 REGIQLLIS-LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA---AGGIP--------------PLVQLL-EAGSQKAR 533 (2054)
Q Consensus 473 ~ggIp~LV~-LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~---aGaIp--------------~LV~LL-~s~s~~Vr 533 (2054)
.+|-|.|+. -+++.++..|..|+..+..+-.++...-....+ ....| .|+..| ...++.+.
T Consensus 45 ~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~ 124 (728)
T KOG4535|consen 45 ELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTV 124 (728)
T ss_pred CCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 467777665 467788888888888877775532211111000 11111 222223 34477888
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----------------------
Q 000145 534 EVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---------------------- 590 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---------------------- 590 (2054)
.++...|.+|..+.+.-+-.+. -...+..+-.+.++.++.++..+...+..+.....
T Consensus 125 tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h 204 (728)
T KOG4535|consen 125 TQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPH 204 (728)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCC
Confidence 8999999999875543332211 02233334456788899998888888877764410
Q ss_pred ---hhhH------HHHHHHhcCC----------------------------------------CcchHHHHHHHHHHHHh
Q 000145 591 ---SATI------NQLLALLLGD----------------------------------------SPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 591 ---~~~I------p~Lv~LL~~~----------------------------------------~~~V~~~a~~AL~~La~ 621 (2054)
.+.. +.++++=.++ ...++..+...|..++.
T Consensus 205 ~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~ 284 (728)
T KOG4535|consen 205 LSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLAR 284 (728)
T ss_pred CCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHH
Confidence 0000 1111111000 01122223333332221
Q ss_pred hhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc-----ChhhhhhhhhCCCHHHHH------HHh-c
Q 000145 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-----RQDICGSLATDEIVNPCM------RLL-T 689 (2054)
Q Consensus 622 ~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~-----~~e~r~~Iv~~g~V~~Lv------~LL-~ 689 (2054)
...-...+.. ...+.+..-+.+..+.+++.++..+-.+..+ .|+..+.-...+-...+. ... .
T Consensus 285 ~~~~~~~~~~-----~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 285 YFSMTQAYLM-----ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred HHHHHHHHHH-----HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 1110000000 0111222223345789999999999988753 122211111222111111 111 1
Q ss_pred cCCHHHHHHHHHHHHHhhC-CCCcccc-hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH-HHhcCc
Q 000145 690 SNTQMVATQSARALGALSR-PTKTKTT-NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-VLLEDV 766 (2054)
Q Consensus 690 dgs~~vr~~AA~AL~nLs~-s~~~~d~-~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-Iv~~g~ 766 (2054)
+..+..+..++.++.++.. .+...|+ .+.. .+--+...-.+.+.-++.+|.++++-+.-+|..|.. +.-.++
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~-----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPNDRQTL-----CITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCcchhh-----hHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 2334567778888888875 2221122 2210 001111111223334666889998888888888764 344566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhc----CCCchhHhhhhhhhhhHHHHHHhhc-cCCCCchhHHHHHHHHHHHhh
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKH----FPVGDVLKGNAQCRFVVLTLVDSLN-AMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~----~~~~e~i~~~i~~~g~v~~LV~LL~-sg~~~~~~~~~AL~ALa~La~ 841 (2054)
...+...+.+..-..|.+++|+++|+..- .|..+.....+. ...+.+++.+-. +.-+..+.+..|.++|+++..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 77777778777788999999999998642 222111111110 112223332221 112334568889999999874
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhhcCC-hhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCc
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGP-PPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSL 920 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~-~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ 920 (2054)
--....+.. ... ...+.+..+..+..-++ -.+|=+|-.+++|++.+..-++.+ ..=.+.-.+.|..=+....+.
T Consensus 514 vlq~i~~~~--~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~-~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 514 FLQPIEKPT--FAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT-APWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred HHHHhhhcc--HHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC-CCchHHHHHHHHHHHHHhccc
Confidence 211111111 111 11223333333333333 338999999999999876432211 111122233445555578899
Q ss_pred eeehhhhHHHHHhc
Q 000145 921 EVRVGGAALLICAA 934 (2054)
Q Consensus 921 ev~~~~~~~~i~~~ 934 (2054)
+||+-++..+-.-+
T Consensus 589 KVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 589 KVRIRAAAALSVPG 602 (728)
T ss_pred eEeehhhhhhcCCC
Confidence 99999988886443
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=6.8 Score=55.79 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCC
Q 000145 527 AGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDS 605 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~ 605 (2054)
+.-+++|..+..++..|+.+... .+-.+ ...||.|++....-.+.+....+.=+.|. +.++++.+-.-....+
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~----e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINI----ETEALDTLRASAAKSS 1215 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhh----HHHHHHHHHHhhhcCC
Confidence 45689999999999999875432 11111 33455555555544444433222211222 2222322222111122
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhc-ChhhhhhhhhCCCHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSM-RQDICGSLATDEIVNP 683 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~-~~e~r~~Iv~~g~V~~ 683 (2054)
|- -+-.-.|+.++ +. ... ...++.+.++++++ .-.+|-.++..+.-|+.. ..+... .....+..
T Consensus 1216 pm-meTi~~ci~~i----D~-~vL------eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~a 1281 (1702)
T KOG0915|consen 1216 PM-METINKCINYI----DI-SVL------EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRA 1281 (1702)
T ss_pred cH-HHHHHHHHHhh----hH-HHH------HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHH
Confidence 21 11111222211 11 111 12478888888877 566777777777776542 111110 11234567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 684 CMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 684 Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
++..+++.++.+++.-+.|.+.|+.-..+ ++... .+..++..+-...+..+..++..+.|++.
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~--dq~qK-----Lie~~l~~~l~k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSP--DQMQK-----LIETLLADLLGKDESLKSISCATISNIAN 1344 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCCh--HHHHH-----HHHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 77777899999999999999999873222 33332 23333333222333334667777777654
No 122
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.61 Score=58.28 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=153.7
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCC-CCCh----hHHHHHHHcCcHHHHHH
Q 000145 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL-SDDH----VGMKIFVTEGVVPTLWD 178 (2054)
Q Consensus 104 AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~-nk~~----~~re~Iv~aG~Vp~Lv~ 178 (2054)
...-+..++.-++.-..+++..+++.|+.+|++++.++..+....|..|...+. +.+. .-.+.+++.++++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 344466677778888888899999999999999999999999999999986421 0112 23456677889999987
Q ss_pred hhC---CCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCCCcch
Q 000145 179 QLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDSIPT 253 (2054)
Q Consensus 179 LL~---s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~~r~~ 253 (2054)
-+. ...+++..=....+..+.|+..-.+.....+.+.|-+.+|+..+... -..-..+|..+|.-+...+.+.+..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 664 33333333345678889999998888888888888899998866543 2456788888888888666667777
Q ss_pred hcccchHHHHHHHhc----cC----CChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 254 VIDSGAVKALVQLVG----QN----NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 254 i~~sGaL~~LL~LL~----s~----~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
...-.++..+++-+. ++ ...+..+.--.+|+.+.. .+.+|..+....|++..+-++..
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH
Confidence 788888888887664 12 123445566667777777 48999999999998877766654
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.40 E-value=0.027 Score=51.10 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 738 IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 738 ~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
+.+|..|+++|++++........-.....++.|..++.++++.+|.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999986444333335667999999999999999999999999875
No 124
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.40 E-value=1.5 Score=54.38 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhh-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC--
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGS-HAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-- 114 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~-~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~-- 114 (2054)
...+..+|+.+..++ .+.|+.++..+.++...+-.. .++.+ ....++.+.+.++.|..+-+..|++++..++..
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 456888999887764 678999999999997665222 22221 123577888888888877777888888777533
Q ss_pred -chhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHh--hCCCCC----
Q 000145 115 -EDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ--LNPKNK---- 185 (2054)
Q Consensus 115 -ee~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~L--L~s~s~---- 185 (2054)
.+....+. ....|.|.+.+.+ .++.+|..|+.+|..++..+.. +........ ..+..++.. .+.+.+
T Consensus 119 ~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~--~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 119 AGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELM--ESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred CCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence 12222332 3567888899887 3677888998888888764222 221111111 122222222 222111
Q ss_pred ---CChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 186 ---QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 186 ---~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
....+...|+.+..-|...-+.....-.-...++.|..+|.+.+.++|..|-.+|.-|.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12356667766666555544432111111336899999999999999999988887766
No 125
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.05 Score=68.49 Aligned_cols=292 Identities=11% Similarity=0.073 Sum_probs=183.5
Q ss_pred HHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh
Q 000145 493 YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 493 ~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
.++..|..+++...--|.-+.+....++|+++|.+++..+...+...++|+...-...++.+.+.|.+..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34445555665444456666777888999999999888888889999999988778889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhch---------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc----ch
Q 000145 573 KGQDASAMALTKLIRAADS---------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK----GL 639 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e~---------~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G----aI 639 (2054)
.+|.+..|.|..+....+. -.+..++.+..+.+-.++.++...++|+......++..+....+.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999988776432 1345677888888899999999999999875443222222211111 24
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhcc---------CCH--HHHHHHHHHHHHhh
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTS---------NTQ--MVATQSARALGALS 707 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~-g~V~~Lv~LL~d---------gs~--~vr~~AA~AL~nLs 707 (2054)
+.|+..++..++-.-+..+-.|.+++..+...+..+.++ +.+..+...+.. |+. .+-..-.....++.
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 556666676666555555677777777666666666554 444444444421 100 01111111111111
Q ss_pred CCCCcccchhHHHHhcCCh--hhHHhhhhc---CCHHHHHHHHHHHHHhhCChH---------HHHHHHhcCcHHHHH-H
Q 000145 708 RPTKTKTTNKMSYIAEGDV--KPLIKLAKT---SSIDAAETAVAALANLLSDPD---------IAAEVLLEDVVSALT-R 772 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV--~~Lv~LL~s---~d~~Vre~Al~AL~NLa~~~e---------~r~~Iv~~g~I~~LV-~ 772 (2054)
.+ .++.. .+.. |++=..=++ .+++.-.+..|...|+.|... -|-.+.-+.|+...+ .
T Consensus 648 e~---~d~f~-----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 648 EN---SDKFK-----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred cc---ccccc-----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 10 01111 1111 333222111 344566677888888876321 233444445555554 5
Q ss_pred HHcCCCHHHHHHHHHHHHHh
Q 000145 773 VLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 773 LL~s~~~evr~~Aa~AL~nL 792 (2054)
...++++.+|+++-.+|.++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 55566789999999999876
No 126
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=0.98 Score=61.26 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhccCchhHHHHHhcCChHHHHHhhcc
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKS 136 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~-~Ls~~ee~r~~v~~~GaIp~LV~LL~s 136 (2054)
|..||..|..+..--+=+-..-.. -|..|.++++|++...+.|.--+-+=. -|+.|+..+..+++.++-...++.|.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLs-VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALS-VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhc-cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 566777777665444344444444 688999999999999999876666654 457787888888888888888888877
Q ss_pred -C--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH
Q 000145 137 -E--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213 (2054)
Q Consensus 137 -e--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~ 213 (2054)
. +++-|..|+-.|..+..+ -+.|.+...+.+.+..-+++|.++. ++-++..++-+|+.|=.+.+..+-.=.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~n----f~lGQ~acl~~~li~iCle~lnd~~--~pLLrQW~~icLG~LW~d~~~Arw~G~ 639 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRN----FKLGQKACLNGNLIGICLEHLNDDP--EPLLRQWLCICLGRLWEDYDEARWSGR 639 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcc----cchhHHHhccccHHHHHHHHhcCCc--cHHHHHHHHHHHHHHhhhcchhhhccc
Confidence 3 678999999999999973 5678899999999999999998753 467788888889988777654433344
Q ss_pred hhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 214 eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
+.++.+.|..+|.++.+++|..|+.+|..+...
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999998853
No 127
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.15 E-value=0.77 Score=59.60 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=158.3
Q ss_pred HHHHhhcChhhhHHHhhcchHHHHHHHh----------ccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 414 AMASLYGNIFLSQWVSHAEAKKVLIGLI----------TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 414 AL~~L~~n~~~~~~L~~~g~I~~LI~LL----------~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
+|--+.+++.....+...+++..|..+- ...+.++...|..+|+|+...++..++...+.|+.+.++..+
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 3334455666666677777777776665 335688899999999999999899999999999999999999
Q ss_pred cCC-----ChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhc-----------------CCHHHHHHHHHHH
Q 000145 484 GLS-----SEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEA-----------------GSQKAREVAAHVL 540 (2054)
Q Consensus 484 ~s~-----d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s-----------------~s~~Vre~AA~aL 540 (2054)
+.. +.++.....+.|.-++....+.+..+.+. +++..++..|.. .+......+..++
T Consensus 84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 84 KNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred HcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 876 67788888888888887667777666654 677777765421 1234455677888
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhcc---------CChhHHHHHHHHHHHHHHh-------------------hchh
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKS---------GGPKGQDASAMALTKLIRA-------------------ADSA 592 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS---------~~~evq~~AA~AL~nLs~~-------------------~e~~ 592 (2054)
.|++.+...... -...+.++.|+.++.. .......++..+|.|+-.. ....
T Consensus 164 FNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~ 242 (446)
T PF10165_consen 164 FNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD 242 (446)
T ss_pred HHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence 999876443322 1224556666654332 1235677888888877211 0122
Q ss_pred hHHHHHHHhcC-----CC---cchHHHHHHHHHHHHhhh------------cchHHHHhhhh-cccchHHHHHHhccCCH
Q 000145 593 TINQLLALLLG-----DS---PSSKAHVIKVLGHVLTMA------------LQEDLVQKGSA-ANKGLRSLVQVLNSSNE 651 (2054)
Q Consensus 593 ~Ip~Lv~LL~~-----~~---~~V~~~a~~AL~~La~~~------------~~~d~~~~~l~-~~GaI~~LV~LLks~s~ 651 (2054)
.+..|+.+|.. .. ++.-.-...+|..++... +....+..... ....-..|+.++.+..+
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~ 322 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP 322 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence 44555555531 11 111122233333333211 00011111112 22335679999998889
Q ss_pred HHHHHHHHHHHHHhh
Q 000145 652 ENQEYAASVLADLFS 666 (2054)
Q Consensus 652 evre~Aa~ALanLas 666 (2054)
.+|..++..|..||.
T Consensus 323 ~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 323 QLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999986
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=24 Score=49.25 Aligned_cols=365 Identities=13% Similarity=0.084 Sum_probs=184.3
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
.|..-+++.+.. ++..++..++.+..... ..+ ....+...++++.-. ++.....++-+|+.++...-..-..+
T Consensus 345 ~Lls~l~d~dt~-VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l-- 418 (1133)
T KOG1943|consen 345 HLLSALSDTDTV-VRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL-- 418 (1133)
T ss_pred HHHHhccCCcch-hhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--
Confidence 334445555554 99999999999965432 111 123455566655433 36667788899999987632222111
Q ss_pred cccHHHHHhhhcCC--------ChhhhHHHHHHHHHHhhhccchh-hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH
Q 000145 473 REGIQLLISLLGLS--------SEQHQEYAVQLIAILTEQVDDSK-WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~--------d~~Vr~~Aa~aL~nLs~~s~e~r-~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL 543 (2054)
...+|.++.-+.-+ ...+|..|+..++.+++....+. ..+...=.-..|...+.+.+-.+|+.|..++...
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 13456655554322 33589999999999988533221 0011110111122234455677888888777654
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh------hchhhHHHHHH-H----hcCCCcchHHHH
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA------ADSATINQLLA-L----LLGDSPSSKAHV 612 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~------~e~~~Ip~Lv~-L----L~~~~~~V~~~a 612 (2054)
.. +.|-.|.=+.+..+-+ +.+..-..|+..+ .-.+...++.+ + +..=+..++..+
T Consensus 499 VG----------R~~n~p~Gi~Lis~~d----y~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 499 VG----------RQGNFPHGISLISTID----YFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hc----------cCCCCCCchhhhhhcc----hhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 32 1222211111221111 1111111221111 01122222222 2 222345677778
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh---hhhhh---CC---CHHH
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC---GSLAT---DE---IVNP 683 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r---~~Iv~---~g---~V~~ 683 (2054)
..+|..|+.-.+. ....+.+++++...-+++...|..+.-+.+.+........ ....+ .+ .+++
T Consensus 565 a~aL~~Ls~~~pk-------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 565 AYALHKLSLTEPK-------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHhhHH-------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 8888776432211 1234568888888888888888877777766654321111 00000 11 2333
Q ss_pred HHH-HhccCC-HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----ChH
Q 000145 684 CMR-LLTSNT-QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----DPD 756 (2054)
Q Consensus 684 Lv~-LL~dgs-~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-----~~e 756 (2054)
+.. .+..|. .-.+..-...+.+++.+.. .........++-..+.+.+...+ .+++.|.+++..+++ |+.
T Consensus 638 ~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~---~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~ 713 (1133)
T KOG1943|consen 638 ICDRYFYRGQGTLMRQATLKFIEQLSLSKD---RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEG 713 (1133)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhccc---hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCch
Confidence 322 222232 3344445666667665222 22223344445555556664444 788899999998875 221
Q ss_pred HHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhh
Q 000145 757 IAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2054)
Q Consensus 757 ~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~ 794 (2054)
... ..+...+..+.+. +..+|+--.-++.++..
T Consensus 714 ~~~-----~li~~~ls~~~~~~~~~~r~g~~lal~~lp~ 747 (1133)
T KOG1943|consen 714 EEA-----PLITRYLSRLTKCSEERIRRGLILALGVLPS 747 (1133)
T ss_pred hhh-----HHHHHHHHHhcCchHHHHHHHHHHHHccCcH
Confidence 111 2233333334444 56777777777777764
No 129
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.62 Score=61.15 Aligned_cols=260 Identities=18% Similarity=0.158 Sum_probs=146.2
Q ss_pred cHHHHHhhhcCCC-hhhhHHHHHHHH--HHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 475 GIQLLISLLGLSS-EQHQEYAVQLIA--ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 475 gIp~LV~LL~s~d-~~Vr~~Aa~aL~--nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
.+..|.+.|++.+ +.++..++-.|+ +++..+.+ ....+-..|..++.-.-+.|.-+.+-+.... .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt-~~- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT-AN- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhccchhhhhHHHHhhhhHhhCc-Cc-
Confidence 4567788777654 445555555543 33332211 2344555566655555555554444443211 11
Q ss_pred HHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 552 ACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
..++.-++...... ...+++..+..+.-.......++-+.+.+++.+.++-.+..-.-+++.- .
T Consensus 483 -----~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alA-y--------- 547 (929)
T KOG2062|consen 483 -----QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALA-Y--------- 547 (929)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHH-H---------
Confidence 22344444444332 2344444443333333333344556666777777666554332222211 1
Q ss_pred hhhhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhC
Q 000145 631 KGSAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSR 708 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~ 708 (2054)
.+-...++|+.|.++ .++.|+++|..|+.+|.-++..+++. .+..+.+|.+ -++.||-.+|.||+-.+.
T Consensus 548 ~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 548 VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 112345678888887 56679999999999999998755543 4666777765 589999999999998887
Q ss_pred CCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 709 s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
+. +.+. ++..|-.+..+...-||.-|+-+++-+.. ++....+. .+....+.+++.+.+++.
T Consensus 619 Gt----G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 619 GT----GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred CC----CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 33 3332 34444455567777889989988887743 22221111 123344556666665543
No 130
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=27 Score=48.80 Aligned_cols=730 Identities=15% Similarity=0.106 Sum_probs=321.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcC---cHHHHHHHHccCC------HHHHHHHHHHHHHh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQ---AMPLFISILRSGT------PLAKVNVAATLSVL 111 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aG---gVp~LV~LLks~s------~evr~~AA~vL~~L 111 (2054)
|..+....+....+.++-..+...|+.+++-+ ..|..+.-... -++.++.+|...+ .+.+.-....|.-+
T Consensus 74 v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvr-gyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvl 152 (1133)
T KOG1943|consen 74 VPNLLDIVRKFTIDLGELHLAFEYLYILCKVR-GYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVL 152 (1133)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhc-cchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 33344444444445455555666788887765 33443322122 3677788888332 34455555555554
Q ss_pred ccCc-hhH---HHHHhc--CChHHHHHhhcc---CCHHHHHHHHHHHHHHhcCCCC--------------CChhHHHHHH
Q 000145 112 CKDE-DLR---LKVLLG--GCIPPLLSLLKS---ESTDTRKAAAEALYEVSSGGLS--------------DDHVGMKIFV 168 (2054)
Q Consensus 112 s~~e-e~r---~~v~~~--GaIp~LV~LL~s---ed~eVr~aAa~AL~nLS~~~~n--------------k~~~~re~Iv 168 (2054)
..++ +.+ ..+... ..+..++....+ .+.-.+..|+-.+..+-...+- ++......+.
T Consensus 153 llnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~ 232 (1133)
T KOG1943|consen 153 LLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFY 232 (1133)
T ss_pred HcCCCcccccCcccccCCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHH
Confidence 4332 100 000111 123344433211 2335666666666555431100 0111122445
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh-----ccC--CHHHHHHHHHHHH
Q 000145 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-----SSD--NAAAQSNAASLLA 241 (2054)
Q Consensus 169 ~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL-----~s~--s~evq~~A~~aL~ 241 (2054)
.-|....+..+++..+. +.+...+...++.+....+..............+++.+ ... +...+...-.+-.
T Consensus 233 ~~g~L~al~ai~k~~~r--~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~ 310 (1133)
T KOG1943|consen 233 KLGFLIALLAIFKHGSR--KDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLAS 310 (1133)
T ss_pred HHHHHHHHHHHHHhcch--hhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhh
Confidence 55666667776665542 23555556666666555432211011101112222211 111 1222222222222
Q ss_pred HHHh---------------hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHH
Q 000145 242 RLML---------------AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2054)
Q Consensus 242 nLs~---------------~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~L 306 (2054)
||.. .+.+. -...-++++..|+..+. +.|..+|..|+.-+..+....+ ..+ ....+...
T Consensus 311 nl~~~s~~~~~~~~~~~~d~e~ed-v~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp---~~L-ad~vi~sv 384 (1133)
T KOG1943|consen 311 NLDPDSFAPSEPVILQQDDDEGED-VPEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLP---PEL-ADQVIGSV 384 (1133)
T ss_pred ccCccccccCcccccccccccccc-cHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCc---HHH-HHHHHHHH
Confidence 2220 00000 00112356777777777 5777899999999988887644 111 12234445
Q ss_pred HHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc--CchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000145 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYG--GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384 (2054)
Q Consensus 307 IeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG--gis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~ 384 (2054)
+++ ..|-.+ ..+.. .+.-+|+.++. -+.+ .....-+.-++..+-|..++..
T Consensus 385 id~-~~p~e~------~~aWH-gacLaLAELA~rGlLlp-----------s~l~dVvplI~kaL~Yd~~~G~-------- 437 (1133)
T KOG1943|consen 385 IDL-FNPAED------DSAWH-GACLALAELALRGLLLP-----------SLLEDVVPLILKALHYDVRRGQ-------- 437 (1133)
T ss_pred HHh-cCcCCc------hhHHH-HHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHhhhhhhhcc--------
Confidence 552 222211 11122 35556666542 1111 0001111222223333222110
Q ss_pred ccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh---cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY---GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 385 ~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~---~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
......+|+.|+.....++ ...++.. +.+.=.-..|+.-+-+.+-..++.|..++.....
T Consensus 438 ----------------~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 438 ----------------HSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred ----------------cccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 1111237777777666663 3333333 2221122234444555667788888888877654
Q ss_pred cCccchhhhhccccHHHHHhhhcCCCh---hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHH
Q 000145 462 REVGIWEAIGKREGIQLLISLLGLSSE---QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAH 538 (2054)
Q Consensus 462 ~s~e~r~~Ive~ggIp~LV~LL~s~d~---~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~ 538 (2054)
..... .-||+ ++.+-|. ..|.++-..++.--.+.+.++..+.+.-.. +-+..=|..+|+.+++
T Consensus 501 R~~n~------p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t----~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 501 RQGNF------PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLT----KKVCHWDVKIRELAAY 566 (1133)
T ss_pred cCCCC------CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHh----cccccccHHHHHHHHH
Confidence 41111 12333 2222221 122222222222212223333333322000 0022338999999999
Q ss_pred HHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000145 539 VLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 539 aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~ 618 (2054)
+|.+|+....+. ...+.+++++...-+.+...+..+..+.+.+..... .+.++..- ...+....+-.
T Consensus 567 aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~--~l~~~~~~-------l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 567 ALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR--KLEPVIKG-------LDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh--hhhhhhhh-------hHHHHhhhhhh
Confidence 999997643321 235678888888888888888777776666653311 00000000 00000000000
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHH-HhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQ-VLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
.++++.. ....+ ..-.+......+-.+...........+..+--.-+.+.+++.+ .+|
T Consensus 634 -------------------ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~ 693 (1133)
T KOG1943|consen 634 -------------------IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIR 693 (1133)
T ss_pred -------------------hccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 0111111 11111 1233334444444544433333333333333333444443333 677
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTR 772 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~---~~e~r~~Iv~~g~I~~LV~ 772 (2054)
..|..++..+...-...|.... ...+...+.-+... +..++.--..+++++-. +-..++.+ ...+..
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~----~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~ 764 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEE----APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLE 764 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhh----hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhc
Confidence 8888888888751111011110 01223333334333 44455545555555532 22333333 333334
Q ss_pred HHcCC-CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc------CCCCchhHHHHHHHHHHHhhcccC
Q 000145 773 VLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA------MDMNGTDVADALEVVALLARTKQG 845 (2054)
Q Consensus 773 LL~s~-~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s------g~~~~~~~~~AL~ALa~La~~~~~ 845 (2054)
...++ +++-|...+.++.+.+..... ....-.-......|++.+++ |+-..-.+.+|+.++..+...-..
T Consensus 765 ~~p~d~~a~aR~~~V~al~~v~~~~~~---~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 765 LLPSDAWAEARQQNVKALAHVCKTVTS---LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHH---hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 33444 778899999999988875320 00000013345566666653 333334677888777766532111
Q ss_pred CCccCCcccccccCCCchHHHHH-hhh---cCChhHHHHHHHHHHHhhcc
Q 000145 846 LNFTYPPWAALAEVPSSIEPLVC-CLA---EGPPPLQDKAIEILSRLCGD 891 (2054)
Q Consensus 846 ~~~i~~~~~~~~~~~~~L~~Lv~-ll~---~~~~~vq~~Ai~iL~~L~~~ 891 (2054)
.... .+..+.+++. +.. ++...+++-|..++.++.-.
T Consensus 842 p~~l---------d~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 842 PKLL---------DEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cccc---------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 1111 1222333333 333 22233577777777776554
No 131
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.69 E-value=8.7 Score=49.58 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccc--------hhhhhcc----ccHHHHHhhhcCCChhhhHHHHHHHHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGI--------WEAIGKR----EGIQLLISLLGLSSEQHQEYAVQLIAILT 502 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~--------r~~Ive~----ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs 502 (2054)
..|+.++.+ +++...++..+.-+..+.++. -+.+.+. ..+|.|++-.+..+...+..-..+|.++.
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 445555554 566677777777666552211 1222222 35788888888888778999999999998
Q ss_pred hhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 503 EQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 503 ~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
.+-+..-..-.-...+|.|++-|..++.+++..+..+|..+..++
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 865533222222356788889998899999999999999998755
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.53 E-value=0.45 Score=64.01 Aligned_cols=165 Identities=21% Similarity=0.205 Sum_probs=115.0
Q ss_pred hccCChhHHHH-HHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH
Q 000145 567 LKSGGPKGQDA-SAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2054)
Q Consensus 567 LkS~~~evq~~-AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~ 644 (2054)
+.+.+...|.. .-.++..++...+ ....+.+++.....+.+++.-+---+-......++ . ..+ ++..+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~--~lL----avNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--L--ALL----AVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--H--HHH----HHHHHHh
Confidence 34444433333 3355566665544 33456677777777888777665555544432221 1 111 4666677
Q ss_pred HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcC
Q 000145 645 VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2054)
Q Consensus 645 LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~g 724 (2054)
=++++|+.+|-.|.+.+..+-. ++.. .-+++++.+++.++++.||+.|+-|+.++-.- .+....+.|
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l------d~~l~~~~g 166 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL------DKDLYHELG 166 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc------CHhhhhccc
Confidence 7788899999999999888743 2222 34578999999999999999999999999862 233456788
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 725 DVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 725 aV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
.+..+..++.+.++.|..+|+.+|..+-
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 8999999999999999999999998874
No 133
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.49 E-value=1.2 Score=61.28 Aligned_cols=254 Identities=12% Similarity=0.079 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh------c-----hhhHHHH
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------D-----SATINQL 597 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------e-----~~~Ip~L 597 (2054)
....|..|...|..|+..-++- ..+ ...+|-++.++.+..+++|..|..+|..+.... + .-..|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de-~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE-VKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH-HHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 5677888999999987743221 111 456889999999999999999999999886542 1 1245778
Q ss_pred HHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc------------------------cch-HHHHHHhccCCH
Q 000145 598 LALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN------------------------KGL-RSLVQVLNSSNE 651 (2054)
Q Consensus 598 v~LL~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~------------------------GaI-~~LV~LLks~s~ 651 (2054)
..|+.+ ....++..-+.+|+.|+.-...--.....+..+ ..+ +..+.++.++++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 888888 555667666777777753221100000000000 011 223335555666
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh
Q 000145 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2054)
Q Consensus 652 evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~ 731 (2054)
-+|..-...+.-||..-.. +-.+.-++..|+.+|.+.+...|..--..+..++. .. +.|. ++...+|.|..
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~V--G~rs--~seyllPLl~Q 663 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--FV--GWRS--VSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEE--EE--eeee--HHHHHHHHHHH
Confidence 7777777777777652111 01122357889999999988877654433433332 11 2221 34556777788
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 732 LAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 732 LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
-|.+..+.|...|+++|.-|....-.++..+. +.+.....+|-+.+.-+|+.++..+......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 89999999999999999988764444433222 2344444567778888999999988877664
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.42 E-value=0.046 Score=49.61 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 651 ~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
+.+|..|+++|.+++...++.... ....+++.|+.+|+|.++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988654444333 5568899999999999999999999999875
No 135
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.40 E-value=14 Score=50.44 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=104.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
+++...+.+.++++-.=..|...+...++ ..+ -.++.+..=++++|+.+|..|+..++.+-.. .+. ..
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~--~~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~------el~-~~ 127 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPE--LAL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK------ELL-GN 127 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH------HHH-HH
Confidence 45555567788777777778777776442 122 2467777788899999999999998877541 111 23
Q ss_pred CCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 517 aIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
.++++.++++++++.+|..|+-++.++=. ..+..+.+.|.+..+..++.+.+|.+..+|..+|..+-..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67889999999999999999999999853 2245566788899999999999999999999999888544
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.39 E-value=0.083 Score=44.43 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
++.+..+.+.|++++|++++.++++++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 446778889999999999999999999999999999986
No 137
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.22 Score=63.07 Aligned_cols=170 Identities=11% Similarity=0.104 Sum_probs=131.6
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
+....+.++.+....+.|+++|..++..+.-.+...++|+.-.-...+..+.+.+++..|+.++.+.++..|.+..|.++
T Consensus 419 SV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlr 498 (743)
T COG5369 419 SVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLR 498 (743)
T ss_pred HHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhh
Confidence 34456677788889999999998766666667777888887655667778889999999999999999999999999999
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH-------HHhcC-cHHHHHHHHcC
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-------VLLED-VVSALTRVLAE 776 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-------Iv~~g-~I~~LV~LL~s 776 (2054)
++..+... ..+-.....-++..++++.++++..|+..+...|.|+.++..-.++ +.... ....|.+.+.+
T Consensus 499 Hlmyncq~--~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~ 576 (743)
T COG5369 499 HLMYNCQK--NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE 576 (743)
T ss_pred hhhhcCcc--hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh
Confidence 99874444 4555677777889999999999999999999999999874332111 11111 34566777888
Q ss_pred CCHHHHHHHHHHHHHhhhcC
Q 000145 777 GTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 777 ~~~evr~~Aa~AL~nL~~~~ 796 (2054)
.+|..-...+..|-+++...
T Consensus 577 ~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 577 NNPMEILEGCYILVRNAACD 596 (743)
T ss_pred cCchhhhhhHHHHHHHHhcc
Confidence 88877667788888887764
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.03 E-value=0.15 Score=52.72 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh--cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000145 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE--AGSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2054)
Q Consensus 490 Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~--s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~ 557 (2054)
.|...+..++||+..++.++..+.+.|++|.++.... ..+|-+|+||..+++||+.+++++++.|.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567788999999989999999999999999998764 4489999999999999999999999988753
No 139
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=2.6 Score=55.73 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=147.5
Q ss_pred CChHHHHHhhccC-ChhHHHHHHHHHHHHHHh-hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 558 GAVPAFLWLLKSG-GPKGQDASAMALTKLIRA-ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 558 GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~-~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+....|...|++. ++.++..++-.|+-..-. .+.+....+...|..++.-.-+.+.-++|.+.....+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---------- 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---------- 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----------
Confidence 3566777777764 456666666555433222 2345666777777766544334444444444322222
Q ss_pred ccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH--HhhCCCCc
Q 000145 636 NKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG--ALSRPTKT 712 (2054)
Q Consensus 636 ~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~--nLs~s~~~ 712 (2054)
..+++-+..+.... .+.+....+--++-...+.. +++=+-+.+++.+.+|-.|.....+++ ....++
T Consensus 483 ~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-- 552 (929)
T KOG2062|consen 483 QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-- 552 (929)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--
Confidence 22456666666543 44444443333333333222 244455567778888888876554443 332222
Q ss_pred ccchhHHHHhcCChhhHHhh-hhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKL-AKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRAL 789 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~L-L~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL 789 (2054)
.++|+.|+.. ..+.+++||..|+.+|+.... +|+ .++..|.+|.+. ++.+|..|+.+|
T Consensus 553 ----------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 553 ----------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred ----------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHH
Confidence 2367777776 567899999999999998875 454 456677777655 899999999999
Q ss_pred HHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc--ccCCCccCCcccccccCCCchHHHH
Q 000145 790 HQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART--KQGLNFTYPPWAALAEVPSSIEPLV 867 (2054)
Q Consensus 790 ~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~--~~~~~~i~~~~~~~~~~~~~L~~Lv 867 (2054)
+--|...... .++. |++-+.. +...-++..|+-+++++--+ ...|.+.. +....+.
T Consensus 614 GIaCAGtG~~----------eAi~-lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~----------~frk~l~ 671 (929)
T KOG2062|consen 614 GIACAGTGLK----------EAIN-LLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVN----------GFRKQLE 671 (929)
T ss_pred hhhhcCCCcH----------HHHH-HHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHH----------HHHHHHH
Confidence 9888754211 1222 2222222 22234688899999987642 22233222 1234555
Q ss_pred HhhhcCChh
Q 000145 868 CCLAEGPPP 876 (2054)
Q Consensus 868 ~ll~~~~~~ 876 (2054)
....++|..
T Consensus 672 kvI~dKhEd 680 (929)
T KOG2062|consen 672 KVINDKHED 680 (929)
T ss_pred HHhhhhhhH
Confidence 566666666
No 140
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.90 E-value=27 Score=45.13 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=116.6
Q ss_pred hHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChh
Q 000145 593 TINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e 670 (2054)
.+..++++.. .+++..+..+.++++.+.+--...+... ..+..+..-. ...+...+..+..++..++.+ --
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~------~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv 262 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD------EFLDSLLQSISSSEDSELRPQALEILIWITKA-LV 262 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH------HHHHHHHhhhcccCCcchhHHHHHHHHHHHHH-HH
Confidence 4555666654 3445667777777777764322222111 1233333333 333445555555555544431 11
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc------cc----hhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK------TT----NKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~------d~----~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
.|..-.....+..|+.++.+ +.+...+++++.-+....+.. .. .|+++.. ..++.|++..+..+.+.
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEI 339 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhh
Confidence 11111223346777777766 667788999998887621110 01 1222332 37788888888877778
Q ss_pred HHHHHHHHHHhhCChHHHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 741 AETAVAALANLLSDPDIAA-EVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~-~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..-+.||.++..+-...- .-.-+..+|.|++.+.-.+++++..+..+|..+..+.
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8889999999986432211 1112347888899999999999999999999999875
No 141
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.84 E-value=0.093 Score=54.20 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc--CCChhhhHHHHHHHHHHhhhccchhhHHHhh
Q 000145 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2054)
Q Consensus 449 q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a 515 (2054)
+...+..+++++..++.++..+.+.||||.+++... ..+|-+++.|+.+++||+..+++++..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 456778999999999999999999999999999766 4477799999999999999989988877654
No 142
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=93.63 E-value=0.13 Score=43.18 Aligned_cols=39 Identities=38% Similarity=0.503 Sum_probs=35.7
Q ss_pred chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHh
Q 000145 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153 (2054)
Q Consensus 115 ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS 153 (2054)
++++..+.+.|+++.|+++|.+++++++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999989999999999999997
No 143
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.27 E-value=1.5 Score=58.64 Aligned_cols=235 Identities=16% Similarity=0.066 Sum_probs=155.9
Q ss_pred ccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHH-HHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHH
Q 000145 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLW 541 (2054)
Q Consensus 464 ~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~-nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~ 541 (2054)
..-+...++.||...|.++.....+..+.....+|. .+... ..+ ....++++...+.+. ...-...+..++.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 455566778899999999998888888888888887 33321 111 124566666666544 2233556788999
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCCCcchHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---------SATINQLLALLLGDSPSSKAHV 612 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~~~~~V~~~a 612 (2054)
||+..++..|..+....+++.+-.++-.+++..|..++..+.||..++. ....+.+...+...++......
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9998888877778888888888788888899999999999999987742 1223444444444444444444
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT 692 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs 692 (2054)
+.++..+..... ...............++.++.+++++++........|+.....+....+.....+.-+...-.-..
T Consensus 648 a~a~a~I~sv~~--n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 648 AGALAAITSVVE--NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred cccccchhhcch--hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 444443322111 111112233445677888889999999999998888888777788888877777766665544444
Q ss_pred HHHHHHHHHHHHHh
Q 000145 693 QMVATQSARALGAL 706 (2054)
Q Consensus 693 ~~vr~~AA~AL~nL 706 (2054)
...++.++.+|...
T Consensus 726 a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 726 APKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhHHHHH
Confidence 45566666666543
No 144
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.23 E-value=13 Score=46.61 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=141.9
Q ss_pred hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhh-HHHh--hCCCchHhhhhhcC--CHHHHHHHHHHHHHHhc
Q 000145 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW-AITA--AGGIPPLVQLLEAG--SQKAREVAAHVLWILCC 545 (2054)
Q Consensus 471 ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~-~I~~--aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~ 545 (2054)
...+.+..|+..+..-+.+.|..++....++-+...+.+. ..++ ..--|.++..|-.+ ++++--.+...|+....
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 3446778888888888999999999999999887655554 1111 12325555555433 67777788888888887
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHH
Q 000145 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIK 614 (2054)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~~~~~V~~~a~~ 614 (2054)
+ +...+.+.....+..++...+.++-++...|-.++..+..... ........+|+.+++--.+.++..
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 5 5555666678888889999999999998888888887654321 234567888999999999999999
Q ss_pred HHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 615 VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 615 AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
-|+-+...........+-+....-+..++.+|++.+..+|..|..++--...
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 9999987766666666667777789999999999999999999988877665
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.78 E-value=1.9 Score=52.15 Aligned_cols=220 Identities=20% Similarity=0.118 Sum_probs=131.0
Q ss_pred hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc--CChhHHHHHHHHHHHHHHhhc--------hhhHH
Q 000145 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAAD--------SATIN 595 (2054)
Q Consensus 526 ~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS--~~~evq~~AA~AL~nLs~~~e--------~~~Ip 595 (2054)
.+-++-.+--|...|.++....+.......+...-..+++++++ +...+|++..-+++-++..+. ...+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33355577788888999887543333333455566778888876 557899999999998887643 12345
Q ss_pred HHHHHhcCCCcchHHHH-HHHHHHHHhhhc--chHHHHhhhhcccchHHHHHHh-ccC--CHHHHHHHHHHH--------
Q 000145 596 QLLALLLGDSPSSKAHV-IKVLGHVLTMAL--QEDLVQKGSAANKGLRSLVQVL-NSS--NEENQEYAASVL-------- 661 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a-~~AL~~La~~~~--~~d~~~~~l~~~GaI~~LV~LL-ks~--s~evre~Aa~AL-------- 661 (2054)
-|+++.+.. .++.+ .-|++.++...+ +++........++ +.+-++.+ +.. +++++...-..=
T Consensus 239 dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 239 DLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 556666543 22222 224444443322 2333333333333 34444444 332 554443222211
Q ss_pred ---------HHHhhc----Chh---------hhhhhhhC--CCHHHHHHHhccCCHH-HHHHHHHHHHHhhCCCCcccch
Q 000145 662 ---------ADLFSM----RQD---------ICGSLATD--EIVNPCMRLLTSNTQM-VATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 662 ---------anLas~----~~e---------~r~~Iv~~--g~V~~Lv~LL~dgs~~-vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
..|-++ +|. +...+.+. .+++.|.++++.+++. .-.-|+.-+..+.+..| +.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~ 391 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---EI 391 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---hH
Confidence 111111 111 11222222 5688889999887775 33346677777776555 46
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+..+...|+=..+.+++++++++|+-+|+.++..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 777888999999999999999999999999988664
No 146
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.54 E-value=74 Score=46.25 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2054)
.+..++..|+.+...+|..|+++|..+...++.... ....-..+-.-+. ++...||+.|.+.++......++...+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 466777888888899999999999999966543221 1112222222222 467789999999998665544555555
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCch
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP 342 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis 342 (2054)
++ +.+++-+.++... ++.+++..+..+|...|
T Consensus 893 yY-----~~i~erIlDtgvs---------VRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVS---------VRKRVIKILRDICEETP 924 (1692)
T ss_pred HH-----HHHHhhcCCCchh---------HHHHHHHHHHHHHHhCC
Confidence 54 3344434443322 77788888888875433
No 147
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.49 E-value=2.2 Score=59.08 Aligned_cols=282 Identities=13% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhc---cchhhHHHhhCCCch
Q 000145 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV---DDSKWAITAAGGIPP 520 (2054)
Q Consensus 444 sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s---~e~r~~I~~aGaIp~ 520 (2054)
...+.+..|...|..++....+ -..+ ...+|-++.++.++...||..|+.+|+.+.... +..-..|.-.=.+|.
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d-e~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD-EVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch-HHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 3467788888999988875221 1112 356899999999999999999999998875422 223334444446788
Q ss_pred Hhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh----hHHHH-HHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP----KGQDA-SAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~----evq~~-AA~AL~nLs~~~e~~~I 594 (2054)
|-.++.+ ....+|..=|..|..|+...-..-+... -.....++.+.+. +.++. -..+|... +-
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q----~~~~~g~~n~~nset~~~~~~~~~~~~L~~~-------V~ 580 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ----ELRQAGMLNDPNSETAPEQNYNTELQALHHT-------VE 580 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH----HHHhcccccCcccccccccccchHHHHHHHH-------HH
Confidence 8888887 4556677777777777642111111000 0000112222221 11111 11111111 12
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~ 674 (2054)
.....||.+.++-|+....+.++-|+..-.. .-...=.++.|+.+|++.++..|-.=..-+..++-. .-..
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk------~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~---VG~r 651 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGK------EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF---VGWR 651 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh------cccccchHHHHHHHhcCccHHHHHHHHhhccceEEE---Eeee
Confidence 3356677777778888888888877654211 101122478899999999888886544444433321 0011
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
-+++..+|-|.+-|.|+.+.|...|.++|.-|.... ..+. ..-.+.++...-+|..++..+|..+++.+...+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~----ll~K-~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG----LLRK-PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc----ccch-HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 145677888888899999999999999999988621 1111 1112245555667778899999999999987753
No 148
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=92.34 E-value=1.3 Score=49.49 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=96.2
Q ss_pred hhhccccHHHHHhhhcCCCh------hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 469 AIGKREGIQLLISLLGLSSE------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~------~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
.++..+|+..|+++++++.. .+...++.++..|..| ....|.......+...+...+.. +..+...|...|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677999999999998774 5677889999999886 34455666666777888877655 689999999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
-++..+++.....+.+.=.++.|+..++.+++++|.++...+-.|..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999888888888888899999999999999999888776665543
No 149
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.10 E-value=18 Score=42.91 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc
Q 000145 98 PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2054)
Q Consensus 98 ~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-----ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~ 172 (2054)
+--..++..+|..++..++.|..+..+..--.+-.+|.. ..+-.|..+++.+..|...+ +...-..+...++
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~d---d~eVi~fLl~TeI 169 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKND---DQEVIRFLLTTEI 169 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcC---cHHHHHHHHHhhh
Confidence 344567888888899999999999988665555566643 36778999999999999854 3445667788899
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHH------HHhh-CChHHHH-hhhccCCHHHHHHHHHHHHHHH
Q 000145 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRA------TLEA-GGVDIIV-GLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 173 Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~a------I~ea-GGI~~LV-~LL~s~s~evq~~A~~aL~nLs 244 (2054)
||..++.+..++. .-..-|+.++..+-.++.|-.-. +..- -.+..++ .+.+.++...-.+++++..+|+
T Consensus 170 VPlCLrime~GSe---lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 170 VPLCLRIMESGSE---LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHHHHHHhcccH---HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 9999999998872 23445777888877776542110 1000 0111222 2233455666677777777776
No 150
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.85 E-value=0.61 Score=47.97 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH--hcCcHHHHHHH
Q 000145 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRV 773 (2054)
Q Consensus 696 r~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~I~~LV~L 773 (2054)
|..+..+|...+.+.+. . ..-.-...++|++..+.+.+..||..|+.+|.|++.. .+..+. -......|.++
T Consensus 3 R~ggli~Laa~ai~l~~--~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK--D--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchH--h--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 44556666666553332 1 2223345899999999999999999999999999742 223332 34577888889
Q ss_pred HcCCCHHHHHHHHHHHHHhhh
Q 000145 774 LAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 774 L~s~~~evr~~Aa~AL~nL~~ 794 (2054)
+.+.++.+|..| +.|-++..
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HcCCchhHHHHH-HHHHHHhc
Confidence 999999998755 77776654
No 151
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=31 Score=46.48 Aligned_cols=346 Identities=17% Similarity=0.220 Sum_probs=184.6
Q ss_pred hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.=|+++|+-+|-..++.||.|-. ++ +. ..-+|.+...|++...-+|++|.-++..+=...+. ++ .+ .
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE--~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pD-a 172 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE--PE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PD-A 172 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc--HH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CC-h
Confidence 34567788888888888887744 22 11 13566677788888999999999888877443111 11 22 3
Q ss_pred HHHH-H-hhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc---CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 561 PAFL-W-LLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL---GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 561 ~aLV-~-LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~---~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
|-|+ . +....+|..+++|-..|...- ...++.-|..-.. +=++..+....+-+...++- . .. .+
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D---~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~-p~-----~~ 241 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTD---PERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--N-PA-----EK 241 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcC---HHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--C-HH-----Hh
Confidence 3344 2 556678888888766555442 1222222222111 11122222233333332221 1 11 12
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
...++.+..+|.++++.++..|+..|..++. ++..... +...+++++.+. +-.++..-..-|..+..
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~------ 309 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA------ 309 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh------
Confidence 3468899999999999999999999888876 3322221 124445554332 22233222222222221
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-HH------cCCCHHHHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL------AEGTSEGKKNASR 787 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~-LL------~s~~~evr~~Aa~ 787 (2054)
..+. +-.|.+--++..|.+.|-+++..++.....|+.+...- . .+..|-. ++ .+++.+-|+.-++
T Consensus 310 ~~~~--il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve-d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLik 381 (948)
T KOG1058|consen 310 LHEK--ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE-D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIK 381 (948)
T ss_pred hhHH--HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH-H-----HHHHHHHHHHhccccccccchHHHHHHHH
Confidence 1111 11234445667778888888888888777776532211 1 1111111 11 2234566888889
Q ss_pred HHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHH
Q 000145 788 ALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLV 867 (2054)
Q Consensus 788 AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv 867 (2054)
+++..+.+.|. +. ...++-|++.+.+.+ ...|...|..+..--......+ ..-++.++
T Consensus 382 tih~cav~Fp~---~a-----atvV~~ll~fisD~N-----~~aas~vl~FvrE~iek~p~Lr---------~~ii~~l~ 439 (948)
T KOG1058|consen 382 TIHACAVKFPE---VA-----ATVVSLLLDFISDSN-----EAAASDVLMFVREAIEKFPNLR---------ASIIEKLL 439 (948)
T ss_pred HHHHHhhcChH---HH-----HHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHhCchHH---------HHHHHHHH
Confidence 99888887642 22 457788888885433 2345566666553111111111 00122222
Q ss_pred Hhh-hcCChhHHHHHHHHHHHhhccC
Q 000145 868 CCL-AEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 868 ~ll-~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
..+ .-.+..+..+|+-+++.+|...
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhh
Confidence 222 2344456778888888888754
No 152
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.42 E-value=6.5 Score=48.80 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=89.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhc--ChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhhC-CCCc
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSM--RQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSR-PTKT 712 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~--~~e~r~~Iv~~g~V~~Lv~LL~dgs~--~vr~~AA~AL~nLs~-s~~~ 712 (2054)
.+..+...++.++.+-+..|+.++.-++-. ..+....+.+ ...+.|.+.+.+++. ..|..++.||+-++. +...
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 466777778887766667777776666542 2233333333 567888888887654 455666777776654 1111
Q ss_pred ccchhHHHHhcCChhhHH--hhhhc----------CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCH
Q 000145 713 KTTNKMSYIAEGDVKPLI--KLAKT----------SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTS 779 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv--~LL~s----------~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~ 779 (2054)
.+.....+ ..+..+. ...+. +++.+...|+.+-+.|.. -|...-.-.-+..++.|+.+|.+.+.
T Consensus 166 ~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 166 EEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV 242 (309)
T ss_pred hhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 01111000 0111111 11111 235677777777777765 23322122234579999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000145 780 EGKKNASRALHQLLK 794 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~ 794 (2054)
.+|.+|.++|+=|..
T Consensus 243 ~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 243 DVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
No 153
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.58 E-value=10 Score=48.51 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=115.4
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-HHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 000145 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAK-KEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 35 ~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~-d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls 112 (2054)
......|.+++..++++. ..+++..|+..|..+..+. -.-+..-.. ..+..+++.|.+ .++..+..|.++|..++
T Consensus 282 ~~~~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 282 VDQSALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred cchhHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 344577888888887763 3466788888888876554 233332221 346778888888 78889999999999998
Q ss_pred cCchhHHHHHhcCChHHHHHhhccCCHHHHHHHH-HHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHH
Q 000145 113 KDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQ 191 (2054)
Q Consensus 113 ~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa-~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~ 191 (2054)
.....|..=--.-+|..+++.-.+...++...|. .++..++++ .+. . .|..+..++... +....
T Consensus 359 ~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~----~P~--~------~I~~i~~~Ilt~---D~~~~ 423 (516)
T KOG2956|consen 359 TNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH----LPL--Q------CIVNISPLILTA---DEPRA 423 (516)
T ss_pred HhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----Cch--h------HHHHHhhHHhcC---cchHH
Confidence 7654432211224556666666664444444444 556666653 221 1 122223333221 11233
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 192 e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
..++..+..++..-..-.-.-.-....|.+++...+.+..+|..|+.+|-.|.
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 35566666666643222111222346788888888999999999999887776
No 154
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.47 E-value=1.2e+02 Score=44.46 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=87.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~ 162 (2054)
.+.+..++..|..+...+|..|.++|..+..-+..-. .....-..+..=+.+.+..||++|+..++...-. .+.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~----~~e 888 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS----IPE 888 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc----cHH
Confidence 4678888889998899999999999988854322100 0001111222334456888999999999865532 111
Q ss_pred HHHHHHHcCcHHHHHHhhCCC-CCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhc---cCCHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQLNPK-NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS---SDNAAAQSNAAS 238 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~-s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~---s~s~evq~~A~~ 238 (2054)
.++...+.+... ...+..|+..++++++.+|...+..-. -++..++++. +....++.-+..
T Consensus 889 ---------~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 889 ---------LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred ---------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHH
Confidence 233333333211 223467999999999999998876522 1233334443 333458888998
Q ss_pred HHHHHHh
Q 000145 239 LLARLML 245 (2054)
Q Consensus 239 aL~nLs~ 245 (2054)
++.++=.
T Consensus 954 tf~klWF 960 (1692)
T KOG1020|consen 954 TFLKLWF 960 (1692)
T ss_pred HHHHHhc
Confidence 8888764
No 155
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.25 E-value=0.26 Score=50.88 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=33.4
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|+|+|+++.||+.. .|.++.||++++|+ ..++|+|+.+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~ 41 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKER 41 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccC
Confidence 89999999999764 57899999999997 8899998864
No 156
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.19 E-value=13 Score=47.36 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhhcH---HHHHHHhhhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhccCchhHHHHHhc
Q 000145 55 PQERELITMRILTIAKAKK---EARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAATLSVLCKDEDLRLKVLLG 124 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d---~ar~~I~~~aGgVp~LV~LLks~-------s~evr~~AA~vL~~Ls~~ee~r~~v~~~ 124 (2054)
.++|..|+--..+++++.| .+|+.+.+ +-|.+-+-++|+++ +...+.-+..+|.-+|.+++....---.
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v 103 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV 103 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH
Confidence 4668888888888888765 57778888 77889999999874 3346677888888899887643222222
Q ss_pred CChHHHHHhhcc-CCHH------HHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC
Q 000145 125 GCIPPLLSLLKS-ESTD------TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2054)
Q Consensus 125 GaIp~LV~LL~s-ed~e------Vr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~ 183 (2054)
..||.|+.++.. .|++ +.+.|-.+|..++. .+.|...++..|+++.+-++-..+
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-----~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-----AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-----CCchhHHHHhcCchHHHHHHHhCC
Confidence 678999999976 3444 78899999999997 456889999999999999765543
No 157
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.00 E-value=8 Score=44.01 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhH
Q 000145 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2054)
Q Consensus 650 s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~L 729 (2054)
++.+|.+++.+++.|+...+... +..++.+...|+|+++.+|+.|..+|.+|...... ..+ ...+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k-----~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVK-----GQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eeh-----hhhhHHH
Confidence 57889999999999987443322 23478889999999999999999999999863222 222 2234778
Q ss_pred HhhhhcCCHHHHHHHHHHHHHhhCC
Q 000145 730 IKLAKTSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 730 v~LL~s~d~~Vre~Al~AL~NLa~~ 754 (2054)
+.++.+++++++..|...+..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988753
No 158
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=88.64 E-value=0.38 Score=50.59 Aligned_cols=41 Identities=37% Similarity=0.513 Sum_probs=35.2
Q ss_pred CceEEEEEcCCcchh-hc--CCCccceEeeccC-CCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ-TM--GTTNAFCRLTIGN-GPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2054)
|.|+|+|.+++||+. .. |.++.||++.+|+ .+..+|+++.+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~ 46 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD 46 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC
Confidence 889999999999984 32 4589999999999 59999999854
No 159
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=88.58 E-value=0.35 Score=50.42 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=35.6
Q ss_pred ceEEEEEcCCcchhhcCCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
+|+|+|.++.||+.. |..+.||++.+|+.++++|+++.+
T Consensus 1 ~L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~ 39 (117)
T cd08383 1 SLRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK 39 (117)
T ss_pred CeEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC
Confidence 489999999999988 999999999999888899999864
No 160
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.43 E-value=1.9 Score=48.21 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=80.9
Q ss_pred hHHHHHHHHcCCCChhhHHHHHHHHHHHhh-cChhhhHHHhhc-chHHHHHHHhc--cCCHHHHHHHHHHHHHhcccCcc
Q 000145 390 QIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 390 gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~n~~~~~~L~~~-g~I~~LI~LL~--ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
.+.+++..++...+.+ -...+..++..++ ..+++...+... |..+.++.++. ..+..++..++..|..-|.+ ..
T Consensus 43 ~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~ 120 (157)
T PF11701_consen 43 KISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS 120 (157)
T ss_dssp HHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH
Confidence 3446666666665444 5678888888884 567888877655 56788999998 78888999999999888877 45
Q ss_pred chhhhhccccHHHHHhhhc-CCChh-hhHHHHHHHHHH
Q 000145 466 IWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAIL 501 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nL 501 (2054)
.|..|. ..|++.|.++++ ++++. +|..|+.+|++|
T Consensus 121 ~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 566664 589999999996 55566 899999988764
No 161
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.13 E-value=23 Score=40.37 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD 604 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~ 604 (2054)
++.+|.++..+++.|+..-+.. + ...++.+...|+++++.+|+.|..+|.+|...+- ...+..+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---V--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---H--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 4788999999999998643321 1 3457888899999999999999999999987632 22347788888999
Q ss_pred CcchHHHHHHHHHHHHhh
Q 000145 605 SPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~ 622 (2054)
+++|+..+..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999988888877644
No 162
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.12 E-value=11 Score=45.99 Aligned_cols=260 Identities=16% Similarity=0.089 Sum_probs=146.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccc-cHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchhhH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE-GIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~g-gIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++|-.+++.-+.-++..|++.+.++... ++.|..+-..+ .-..++.++++. +.+.|-+.+-+++.++. +++....
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence 3444555555566788888999988877 55555443322 334566666643 56788899999999988 3443322
Q ss_pred HHh-hCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCC--hhHHHHHHHcCChHHHHHhhcc---CChhHHHHHHHHHHH
Q 000145 512 ITA-AGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHS--EDIRACVESAGAVPAFLWLLKS---GGPKGQDASAMALTK 584 (2054)
Q Consensus 512 I~~-aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~s--d~~r~~I~e~GaI~aLV~LLkS---~~~evq~~AA~AL~n 584 (2054)
+-+ ..-+.-|+++.+.. ..++-+-+++++.|+.... +.+...+. .|-+.+-++.|.. .+++++...-..=..
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 222 24456666777665 6778888899999987633 33444443 3333344444432 233333221111111
Q ss_pred HHHhhc-hhhH-HHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHH-HHHHH
Q 000145 585 LIRAAD-SATI-NQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE-NQEYA 657 (2054)
Q Consensus 585 Ls~~~e-~~~I-p~Lv~L----L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~e-vre~A 657 (2054)
+-+... -... .-+.++ +....+++...- - ...-+...+ ..-..++.|.+++++.++. .-..|
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dF-------W--s~N~d~l~k--dny~i~k~L~~~lq~n~~nt~i~vA 377 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDF-------W--STNLDMLIK--DNYEIVKVLKKYLQSNNPNTWICVA 377 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCc-------h--hhhHHHHhh--hhHHHHHHHHHHHhcCCCCceEeee
Confidence 111100 0001 011111 111111211100 0 000000000 0112478889999887666 33445
Q ss_pred HHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 658 ASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 658 a~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+.=+..+....|+.+..+.+.|+=..++.++.+.++++|-+|..|+..+..
T Consensus 378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 555666666689999999999999999999999999999999999877653
No 163
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.67 E-value=12 Score=46.20 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=106.7
Q ss_pred cHHHHH-hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC-Chh-HH
Q 000145 475 GIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH-SED-IR 551 (2054)
Q Consensus 475 gIp~LV-~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~-sd~-~r 551 (2054)
.+..|+ ..+++.+..+|+.|+.+|+-.+-.+.+. ....++.+...++.+++.++..|..++..+... ... ..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 5778889999999999999988754322 123466677778778999999999999988541 111 11
Q ss_pred HH------HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---c-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000145 552 AC------VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D-SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 552 ~~------I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~ 621 (2054)
.. ......+..+...+.+.+++++..++..++.|.... + ..++..|+-+.-+....-......+|+.+..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11 112345566678888999999999999999998763 2 3455555444433322223356778887764
Q ss_pred h-hcchHHHHhhhhcccchHHHHHHhccC
Q 000145 622 M-ALQEDLVQKGSAANKGLRSLVQVLNSS 649 (2054)
Q Consensus 622 ~-~~~~d~~~~~l~~~GaI~~LV~LLks~ 649 (2054)
. .......+. .....+++.+-.+.+..
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 3 222222222 23455667766666543
No 164
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.56 E-value=3.9 Score=49.12 Aligned_cols=98 Identities=21% Similarity=0.181 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc-cCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHh
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR-SGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSL 133 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk-s~s~evr~~AA~vL~~-Ls~~ee~r~~v~~~GaIp~LV~L 133 (2054)
.....|++.|.-++.-++..|..+.+ ..++..++.+|. +..+.++..+..+|.. |...+.+...+-+.+|+..++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566889999999999999999988 789999999994 4678999999999955 45667888888888999999999
Q ss_pred hcc--CCHHHHHHHHHHHHHHhc
Q 000145 134 LKS--ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 134 L~s--ed~eVr~aAa~AL~nLS~ 154 (2054)
+++ -+.++|-.+...|+-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 998 388899999999877665
No 165
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.26 E-value=1.5e+02 Score=41.50 Aligned_cols=405 Identities=18% Similarity=0.162 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChH-----HH
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIP-----PL 130 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp-----~L 130 (2054)
+.+...+..+..+-..++++-++..+ .--||.++.-+..-...+|.....+|-.- +....+|| .|
T Consensus 482 dlqaeVlnrmfkIftshpeNYricqe-lytvpllvlnmegfPsslqvkiLkilEyA---------VtvvncvPeqELlSL 551 (2799)
T KOG1788|consen 482 DLQAEVLNRMFKIFTSHPENYRICQE-LYTVPLLVLNMEGFPSSLQVKILKILEYA---------VTVVNCVPEQELLSL 551 (2799)
T ss_pred chhhHHHHHHHHHhccChHHhhHHhh-ccccchhhhhhcCCChHHHHHHHHHHHHH---------HhhhccCcHHHHHHH
Confidence 34667788888888777777666655 67899999888777777777777666221 01112222 33
Q ss_pred HHhhccC-CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC--------------------------
Q 000145 131 LSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK-------------------------- 183 (2054)
Q Consensus 131 V~LL~se-d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~-------------------------- 183 (2054)
.-+|..+ +......-......|.. -+...++.+.+-|.+..|...++..
T Consensus 552 CvLLqqpIssalkhtIlsffvKLIs----fDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~ 627 (2799)
T KOG1788|consen 552 CVLLQQPISSALKHTILSFFVKLIS----FDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFK 627 (2799)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhh
Confidence 3444443 22233333333333333 1455677777777777776665441
Q ss_pred -------------------CCCChhHHH------HHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHH
Q 000145 184 -------------------NKQDNVVQG------FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238 (2054)
Q Consensus 184 -------------------s~~d~~V~e------~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~ 238 (2054)
+... .+.+ ....+|..+.+++..++..+.++.|+..++.++ .+++-+...++
T Consensus 628 ~~ld~~daiisspklmeSgsgkl-plfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLr 704 (2799)
T KOG1788|consen 628 QHLDSQDAIISSPKLMESGSGKL-PLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLR 704 (2799)
T ss_pred hccccccceeecchhhcccCCcc-chhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHH
Confidence 0000 0111 125678888888888889999999999999888 55678888888
Q ss_pred HHHHHHhhcCCCcchhcccchHHHHHHHhccC-------CChh----HHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHH
Q 000145 239 LLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-------NDIS----VRASAADALEALSSKSIKAKKAVVAADGVPVLI 307 (2054)
Q Consensus 239 aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~-------~d~~----Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LI 307 (2054)
++.+|...++.. .+..-+..++..|+++ ...+ ......++++.+-.-|...|..+.+++|...|.
T Consensus 705 ivscLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLl 780 (2799)
T KOG1788|consen 705 IVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLL 780 (2799)
T ss_pred HHHHHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHH
Confidence 888887554431 1223445556655531 1111 122334455555544567888999999999988
Q ss_pred HhhcC--CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc-----hhhHHHHHHHHHHHHHHhhcCCC
Q 000145 308 GAIVA--PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-----AAPVADIIGALAYALMVFEQKSG 380 (2054)
Q Consensus 308 eLL~s--~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~-----~~~iA~~LgaL~~~~~~l~~~~~ 380 (2054)
..+.. ...+.+.. + .+ .....+-++- -.++. +.- ..++.. +.-+-+.+..+......
T Consensus 781 ttLhtfqgftelhde-s---Dl-cvyiklfkil---FrlfT-lav-cenasNrmklhtvITsqtftsLLresgl------ 844 (2799)
T KOG1788|consen 781 TTLHTFQGFTELHDE-S---DL-CVYIKLFKIL---FRLFT-LAV-CENASNRMKLHTVITSQTFTSLLRESGL------ 844 (2799)
T ss_pred HHHHHhccchhcCCc-h---hh-hhHHHHHHHH---HHHHH-HHH-hhcchhhhheeeeeeHHHHHHHHHHhcc------
Confidence 76643 11111110 0 00 0000000000 00000 000 001110 11111111111110000
Q ss_pred CCCcccchhhHHHHH----HHHcCCCChhhHHHHHHHH-HHHhhcC----------h-hhhHHHhhcchHHHHHHHhccC
Q 000145 381 VDDEPFDARQIEDIL----VMLLKPHDNKLVQERVLEA-MASLYGN----------I-FLSQWVSHAEAKKVLIGLITMA 444 (2054)
Q Consensus 381 ~~~~~~~~~gIe~~L----v~LLk~~~~e~Vq~~Aa~A-L~~L~~n----------~-~~~~~L~~~g~I~~LI~LL~ss 444 (2054)
....... .++..| ...+.+++ ...+.++.+ +-.+-.+ + ...+.+...++++.++..+-..
T Consensus 845 -lcvnler-~viqlllElalevlvppf--LtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLln 920 (2799)
T KOG1788|consen 845 -LCVNLER-HVIQLLLELALEVLVPPF--LTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN 920 (2799)
T ss_pred -ceecchH-HHHHHHHHHHHHhhCCch--hhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhh
Confidence 0000000 111111 12222322 122222221 1111111 0 1234567788999999998888
Q ss_pred CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc---CCChhhhHHHHHHHHHH
Q 000145 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 445 d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nL 501 (2054)
.+..|..-...+..+++.++.+.......|.++.|++++. +++...-.++..++.-|
T Consensus 921 ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 921 YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 8999999999999999888888888888888888877653 33333444444443333
No 166
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.25 E-value=1.6e+02 Score=42.06 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=109.0
Q ss_pred chHHHHHHhcc----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc
Q 000145 638 GLRSLVQVLNS----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-SNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 638 aI~~LV~LLks----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~-dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
..+-++...+. ++++++..|.-+|..+..-+.+.+.. .++.|+..+. +.++.+|.++.-+++-++-.+|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34555566643 47999999999999997756555543 4688888886 78899999999999999876554
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
. -.-+.+.|..-|++.++.||+.|..+|.+|..+.- +.-.|-+..+..++.+++++++.-|-.-...|
T Consensus 995 ---l-----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 ---L-----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ---c-----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1 12366778889999999999999999999975433 33457889999999999999999887655555
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
...
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 553
No 167
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.02 E-value=11 Score=51.20 Aligned_cols=173 Identities=21% Similarity=0.173 Sum_probs=102.3
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCC
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~-~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s~ 710 (2054)
..++..+.+++.+..-...+ ++..|..+...- .. ....+..+..+++. +++.++..|..+++.+....
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 34577777878775433333 445565554421 11 12345666666653 45678888888888876511
Q ss_pred Ccc------cchhHHHHhcCChhhHHhhhh----cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC---
Q 000145 711 KTK------TTNKMSYIAEGDVKPLIKLAK----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--- 777 (2054)
Q Consensus 711 ~~~------d~~r~~I~~~gaV~~Lv~LL~----s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--- 777 (2054)
... ...+........++.|...+. ..+.+.+..++.||+|+. .+..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhcccc
Confidence 110 001111222346666766665 356677778999999996 345788888877766
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
+..+|..|+++|.++....| ....+.|+.++.+..++...+..|...|
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 68899999999998865431 3355778888888778877788776543
No 168
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.87 E-value=30 Score=43.56 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=134.7
Q ss_pred HHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchh-----hhh-c-cccHHHHHhhhcCCChhhhHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWE-----AIG-K-REGIQLLISLLGLSSEQHQEYAVQLI 498 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~-----~Iv-e-~ggIp~LV~LL~s~d~~Vr~~Aa~aL 498 (2054)
..+...+.+..|+..+..-+-+.+..++..+.++-....+.+. -+. . ...+..|+.-++ ++++-..+-..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 3455567788889989888999999999999888765443332 121 1 233444444444 556667777788
Q ss_pred HHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCChHHHHHhhccCChhHH
Q 000145 499 AILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQ 575 (2054)
Q Consensus 499 ~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~-~sd~~r~~I~e--~GaI~aLV~LLkS~~~evq 575 (2054)
+.+..+ +.....+.....+..+.+....++-++-..|..++..+-. |.....+.+.. .......-.++.+++--++
T Consensus 148 Rec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 888774 4444455566677888888888999999999999988644 33333444432 2344555679999999999
Q ss_pred HHHHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 576 DASAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~-----------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
+.+...|+.+-.+. +..-+..++.+|++.+..++..+-+....+......+..+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 99999999998663 23456778999999999999998888877765444433333
No 169
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.79 E-value=1.5e+02 Score=41.23 Aligned_cols=238 Identities=17% Similarity=0.168 Sum_probs=149.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCchhHHHHHh---cCC
Q 000145 51 NMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVLL---GGC 126 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee~r~~v~~---~Ga 126 (2054)
.+..|...-.+...+..++.....+..++. ..+...+..+.- ..+-++..|++.++..|+. +++. -+.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~---~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~i 531 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ---HFLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMI 531 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHH
Confidence 334454444455555544444333444332 245555555543 4667888899999887732 2222 155
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
+..|.++....+.++...-..+|...+..+. + .....++.+.|.++.+....+ +++.+...+-.++..++....
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dp--e---f~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~ 605 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDP--E---FAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAA 605 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccCh--h---hhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHH
Confidence 6677777777788888888999999987522 1 223445667788877765544 567788888888888876322
Q ss_pred chhHHHHhhCChHHHHhhhccCC----HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDN----AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADA 282 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s----~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~a 282 (2054)
.. --...-.+|.++..|..+. ......++.+|..+.+..+.-.......-+.|.+.++.-+..|.++...+-++
T Consensus 606 ~~--g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 606 NY--GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred hh--cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 11 0112236899999998875 56777888888888865554444444445777777777666777888899999
Q ss_pred HHHHhhccHHHHHHHHhcCCHH
Q 000145 283 LEALSSKSIKAKKAVVAADGVP 304 (2054)
Q Consensus 283 L~nLs~~s~e~Rk~I~eaggL~ 304 (2054)
|+.+.+...+.--.-...+|..
T Consensus 684 Lra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 684 LRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHhcCHHHHHhhccCCCcc
Confidence 9998775333322333344443
No 170
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=10 Score=48.95 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=100.7
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
.-..+.+++.+.++-.+..-.-+++.-. .+-...|+++.|.++ .+++++++|..|+.+|.-+|..+
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy----------~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--- 583 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAY----------VGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--- 583 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHH----------hcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecC---
Confidence 3345566676666554433222222111 112345678888887 67789999999999999988633
Q ss_pred hhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 672 CGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
...+...+++|.+ .++.+|...|-+|+-.+.+. +.+. ++..|-.+..+.++-||..|+-+++.
T Consensus 584 ------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~----G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 584 ------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT----GDKV------ATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred ------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC----ccHH------HHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 3455666777754 57899999999998877632 2221 45556677788888999999999988
Q ss_pred hhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 751 LLS--DPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 751 La~--~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
+.. +|+..... .+.+..+.+++.+.++..
T Consensus 648 Il~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 648 ILMQCNPELNPNV--KRIIKKFNRVIVDKHESG 678 (926)
T ss_pred HHhhcCcccChhH--HHHHHHHHHHHhhhhHhH
Confidence 754 44432221 124455666666655543
No 171
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=86.49 E-value=6.7 Score=43.95 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=93.5
Q ss_pred HHHhhcchHHHHHHHhccCCH------HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATA------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQL 497 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~a 497 (2054)
.++...+|+..|+.++..+.. +....+..++..+-..+ ...+......-|...+...+.+ +..+...++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 456778999999999988763 66677778888877763 4344555667777777777644 57789999999
Q ss_pred HHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 498 L~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
|-++...++.....+.+.=.++.|+..|..++++++.++...+-.|-...
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999865555666666777899999999999999999998887775543
No 172
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=86.46 E-value=19 Score=50.01 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=112.4
Q ss_pred cCcHHHHHHHHccC-----CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc----CC----HHHHHHHHHHH
Q 000145 83 AQAMPLFISILRSG-----TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS----ES----TDTRKAAAEAL 149 (2054)
Q Consensus 83 aGgVp~LV~LLks~-----s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s----ed----~eVr~aAa~AL 149 (2054)
.||+..++.++.+- ..+.......+|...++-..+|+.+++.|+++.|++.|.. +. .++-+.-+..+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 79999999999873 3456666778888888999999999999999999988853 23 56667767666
Q ss_pred HHHhcCCCCCChhHHHHHHHcC--------cHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHH
Q 000145 150 YEVSSGGLSDDHVGMKIFVTEG--------VVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2054)
Q Consensus 150 ~nLS~~~~nk~~~~re~Iv~aG--------~Vp~Lv~LL~s~s-~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~ 220 (2054)
..|.......+..+.+...... -|..|++.+.++. ...+.+....+++|-.|+.+++.....+++.= ..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--KP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--HH
Confidence 6665421100000011111112 3778888887552 22467888999999999999877644444321 11
Q ss_pred HHhhhccC--CHHHHHHHHHHHHHHHhhc------CCCcchhcccchHHHHHHHhc
Q 000145 221 IVGLLSSD--NAAAQSNAASLLARLMLAF------GDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 221 LV~LL~s~--s~evq~~A~~aL~nLs~~~------~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
.+++=.-+ ...--..-+..++.++.+- ...+..+.+.|.+...+.-+.
T Consensus 274 ~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 11111101 1111123366667766321 233455677888877766664
No 173
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.51 E-value=4.2 Score=41.96 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE 137 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~se 137 (2054)
|..++-.|...+..-+..-.... ...+++++..+.+++..+|..||..|.++++.........-...++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455555555444322222222 2468999999999999999999999999986543332223347788889999999
Q ss_pred CHHHHHHHHHHHHHH
Q 000145 138 STDTRKAAAEALYEV 152 (2054)
Q Consensus 138 d~eVr~aAa~AL~nL 152 (2054)
|+.||..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99988776 455444
No 174
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.36 E-value=2 Score=48.04 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=93.6
Q ss_pred hHHHHHHhc--cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 639 LRSLVQVLN--SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 639 I~~LV~LLk--s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
++.++..+. ...+++|..+.-++..+-. ..+.-.....-+.+..++.+++..-...+..++..+.-..+. ..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d--v~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD--VG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH--HH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH--HH
Confidence 334444333 3577888888888888742 111112222223333444444444666788888888754433 33
Q ss_pred hHHHHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-CCCHH-HHHHHHHHHHHh
Q 000145 717 KMSYIAEGDVKPLIKLAK--TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSE-GKKNASRALHQL 792 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~--s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s~~~e-vr~~Aa~AL~nL 792 (2054)
..-+...|..+.+..+.. ..+..++..++.+|..=+.+...|..|. ..+++-|.+... +.++. +|..|+-+|++|
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 334556788888888988 6788888888888887776666665554 478889999885 55566 788888888764
No 175
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=85.02 E-value=0.73 Score=48.71 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=36.5
Q ss_pred hhcCC--CceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceee
Q 000145 2005 LHCLP--GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIF 2049 (2054)
Q Consensus 2005 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~ 2049 (2054)
|+..| |.|+|+|.++.||+. ..|.++.||++.++++ ..++|+|+.
T Consensus 9 l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~ 61 (125)
T cd04031 9 LWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK 61 (125)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC
Confidence 34455 899999999999975 4678999999999873 567899885
No 176
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.93 E-value=45 Score=42.76 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=70.0
Q ss_pred CChHHHHHhhccC---CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhC-CCCCCChhHHHHHHHHHHH
Q 000145 125 GCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLN-PKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 125 GaIp~LV~LL~se---d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~-s~s~~d~~V~e~Al~aL~n 200 (2054)
.....|..++.+. -+.+-..|+..+..+-. +++..-..+.+.|.++.+++.+. ..-.....+....-.+|..
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~----nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A 181 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIH----NEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA 181 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHh----cCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence 3345555666652 56778888888888886 36666788899999999999988 4433334556566688888
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhcc
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSS 227 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s 227 (2054)
+|-+..|. +.+.+.+.++.+.+.+.+
T Consensus 182 icLN~~Gl-~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 182 ICLNNRGL-EKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhcCHHHH-HHHHhcChHHHHHHHhCC
Confidence 99888775 566666777777766655
No 177
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.84 E-value=17 Score=48.77 Aligned_cols=174 Identities=22% Similarity=0.160 Sum_probs=101.0
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhc-ChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCC
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRP 709 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~-~~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s 709 (2054)
...++..+.+.++++.-...+ ++.++..+... .. -....++.+..++++ .++.++..|..+++++...
T Consensus 355 T~~a~~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLE-AAQLLAVLPHTARY------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhhc------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 344577777777776422211 22222222211 01 123456777777764 3556788888888887751
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhc----CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-C--CCHHHH
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-E--GTSEGK 782 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s----~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s--~~~evr 782 (2054)
.......+........++.|...|.. .+.+.+...+.+|+|+.. +..++.|..++. + .+..+|
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHH
Confidence 11100110011122366666665543 455556679999999863 345556666655 2 257899
Q ss_pred HHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
..|+++|.++....| ......|+.++.+..++...+..|..+|
T Consensus 498 ~~Av~Alr~~a~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 498 LAAILALRNLAKRDP-----------RKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHHhCc-----------hHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999999999986432 2345668888887777777777776543
No 178
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=84.84 E-value=0.63 Score=49.38 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=38.2
Q ss_pred hhhcCC--CceEEEEEcCCcchhhc--CCCccceEeeccC----CCCcccceeee
Q 000145 2004 LLHCLP--GCLTVTIKRGNNLKQTM--GTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2004 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
-|++-| |.|+|+|.++.||+..- |.++.||++.+++ .+.++|+|+.+
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~ 62 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC
Confidence 356667 89999999999997554 7899999999976 45678998864
No 179
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=84.07 E-value=0.92 Score=47.76 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=33.1
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCC--CCcccceeee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
|+|+|.+|.||+.. .|.++.||++.+|++ ..++|+|+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~ 44 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN 44 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC
Confidence 89999999999875 578899999999875 4579999853
No 180
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=84.04 E-value=17 Score=46.07 Aligned_cols=218 Identities=17% Similarity=0.052 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCH-HHHHHHHHHHHHhccCc
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTP-LAKVNVAATLSVLCKDE 115 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~-evr~~AA~vL~~Ls~~e 115 (2054)
...|.-+++.+. ++.+...|..++-.|..-+..+ ..++.+.. .|.+..+++.+.. ++. ..-..++.++..++.+.
T Consensus 20 ~Dev~ylld~l~-~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~ 96 (361)
T PF07814_consen 20 ADEVEYLLDGLE-SSSSSSVRRSSLLELASKCADP-QFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDG 96 (361)
T ss_pred HHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhCCH-HHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC
Confidence 455777888887 4445566777777777766654 66666666 5889999998854 333 33333444445555554
Q ss_pred hhHHHHHhcCChHHHHHhhc-----c--C-------------------------------------CHHHHHHHHHHHHH
Q 000145 116 DLRLKVLLGGCIPPLLSLLK-----S--E-------------------------------------STDTRKAAAEALYE 151 (2054)
Q Consensus 116 e~r~~v~~~GaIp~LV~LL~-----s--e-------------------------------------d~eVr~aAa~AL~n 151 (2054)
..-..+...+....+++++. + . ...-+.-|..++..
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~ 176 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALES 176 (361)
T ss_pred cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHH
Confidence 33333333344444455554 0 0 11122334444555
Q ss_pred Hhc---------CCCCC-ChhHHHHHHHcCcHHHHHHhhCC----CC---------CCChhHHHHHHHHHHHHhcCCCch
Q 000145 152 VSS---------GGLSD-DHVGMKIFVTEGVVPTLWDQLNP----KN---------KQDNVVQGFVTGALRNLCGDKDGY 208 (2054)
Q Consensus 152 LS~---------~~~nk-~~~~re~Iv~aG~Vp~Lv~LL~s----~s---------~~d~~V~e~Al~aL~nL~~~~e~r 208 (2054)
++. ....+ ....|+.+...|++..+++.+.. .. ...-.....++++|.+.+..++.+
T Consensus 177 l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~n 256 (361)
T PF07814_consen 177 LVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEEN 256 (361)
T ss_pred HHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 520 00000 11235667777889999998752 11 011234556788888888777666
Q ss_pred hHHHHhhC--ChHHHH-hhhcc---CCHHHHHHHHHHHHHHHhhcCCCcchhcccc
Q 000145 209 WRATLEAG--GVDIIV-GLLSS---DNAAAQSNAASLLARLMLAFGDSIPTVIDSG 258 (2054)
Q Consensus 209 ~~aI~eaG--GI~~LV-~LL~s---~s~evq~~A~~aL~nLs~~~~~~r~~i~~sG 258 (2054)
+....... ....+. .++.. ........+++++.|+++.+++.+..+...+
T Consensus 257 q~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 257 QSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 55544432 222222 22222 2244567889999999988888877776553
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=83.85 E-value=5.9 Score=47.53 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHH-------HHccC-----CHHHHHHHHHHHHHhccCchhHHHH
Q 000145 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-------ILRSG-----TPLAKVNVAATLSVLCKDEDLRLKV 121 (2054)
Q Consensus 54 s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~-------LLks~-----s~evr~~AA~vL~~Ls~~ee~r~~v 121 (2054)
+++.|+.|+..|.+-....++-.-.+-..-|.+..|++ .+..+ ...-..++...|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 46778887555544433222333333222566666665 22222 1234556777778889999999999
Q ss_pred HhcCChHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSE-----STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~se-----d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
..+...--|..+|+.. -+.+|-.+++.++.|... .+.+....+.+...||..++.+..++. --..-|.-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~---d~~evi~fLl~tEiiplcLr~me~Gse---lSKtvAtf 161 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT---DDPEVISFLLQTEIIPLCLRIMEFGSE---LSKTVATF 161 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHCTTHHHHHHHHHHHS-H---HHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcC---CcHHHHHHHHhhchHHHHHHHHHhccH---HHHHHHHH
Confidence 9998876777777652 366899999999999974 255667778888999999999987651 22334666
Q ss_pred HHHHHhcCC
Q 000145 197 ALRNLCGDK 205 (2054)
Q Consensus 197 aL~nL~~~~ 205 (2054)
++..+-.++
T Consensus 162 IlqKIL~dd 170 (262)
T PF04078_consen 162 ILQKILLDD 170 (262)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 666665544
No 182
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=83.68 E-value=0.96 Score=47.19 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=33.6
Q ss_pred CceEEEEEcCCcchh--hc-CCCccceEeeccC--CCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TM-GTTNAFCRLTIGN--GPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 2050 (2054)
|.|+|+|.+|.||+. .. |.++.||++.++. .+..+|+|+.+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~ 46 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK 46 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC
Confidence 889999999999975 33 7899999999853 35689999853
No 183
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.30 E-value=14 Score=48.92 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=100.5
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~-~--e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
++...+ +++..+.-|+..+..++.. + ...++..++.|..+++..|+..+.+.|-.++.. .++.+.+ ..
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~k------va 98 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSK------VA 98 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHH------HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhH------HH
Confidence 344444 5778888888888888765 2 356888999999999999999888777766533 3344443 48
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT---SNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~---dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
+.|+++|.++++.-...+-.+|..|...++ .+.+..+...+. .+++.+|+.+..-|..-....+.. ..
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~-~~ 169 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE-LL 169 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT-TS
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH-Hh
Confidence 899999999888888888888888876443 233455555554 677888988776664332211110 11
Q ss_pred h-HHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 717 K-MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 717 r-~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
. ..=.+.-++..+.+.|.+-..+--.-.+..|..+-.
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 1 001122244455566766444444456667776654
No 184
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=83.13 E-value=1e+02 Score=43.24 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc----cCC----HHHHHHHHHHHH
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR----SGT----PLAKVNVAATLS 109 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk----s~s----~evr~~AA~vL~ 109 (2054)
...+.+.++.++..+.. ......+..|...|..-+.+|+.+.+ .|+++.|++.|+ .+. +++-.....++.
T Consensus 119 L~~ll~~l~~~~~~~~~-~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRG-RELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCc-HHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34455566666543333 33444555555556666788888888 899999999885 333 566677777775
Q ss_pred HhccCchhHHH-H----HhcC-----C---hHHHHHhhcc----CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc
Q 000145 110 VLCKDEDLRLK-V----LLGG-----C---IPPLLSLLKS----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2054)
Q Consensus 110 ~Ls~~ee~r~~-v----~~~G-----a---Ip~LV~LL~s----ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~ 172 (2054)
.+..+...... . .... . +..+++.+.+ .++.+....++.|-.|+.+ +++..+.+++ .
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G----~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG----NEEKMDALVE--H 270 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC----CHHHHHHHHH--H
Confidence 55433221111 0 1112 2 6666666665 3788999999999999985 3333444332 1
Q ss_pred HHHHHHh--hCCCCCCChhHHHHHHHHHHHHhcCC----Cc--hhHHHHhhCChHHHHhhhccCCH--------H-----
Q 000145 173 VPTLWDQ--LNPKNKQDNVVQGFVTGALRNLCGDK----DG--YWRATLEAGGVDIIVGLLSSDNA--------A----- 231 (2054)
Q Consensus 173 Vp~Lv~L--L~s~s~~d~~V~e~Al~aL~nL~~~~----e~--r~~aI~eaGGI~~LV~LL~s~s~--------e----- 231 (2054)
....+++ ++...+.+. ...+.+++.++.+- .| -+..+.+.|.+...+.+|...-+ +
T Consensus 271 F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 1221121 111111111 23355566555543 22 24568888888888888876422 2
Q ss_pred ---HHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc-cCCChhHHHHHHHHHHHHhh
Q 000145 232 ---AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADALEALSS 288 (2054)
Q Consensus 232 ---vq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~-s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
....++.+|.-|+.++...+.. ...+.+ +++..|. ...+..+-..|-.+|..+..
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345777888888766655544 445556 4444443 22233444555556666655
No 185
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=82.85 E-value=0.9 Score=47.60 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.2
Q ss_pred CceEEEEEcCCcchhh--------cCCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--------MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|.|+|.++.||+.. -|.++.||++.+|+ ...+|+|+.+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~ 48 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE 48 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC
Confidence 7899999999999864 26789999999987 7889998753
No 186
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=82.71 E-value=0.98 Score=48.18 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.0
Q ss_pred eEEEEEcCCcchhhcCCCccceEeeccC-CCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-GPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2054)
|+|+|.++.||....|.++.||++.+++ ++.++|+|+..
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~ 40 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKN 40 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEec
Confidence 6899999999988778999999999976 56689998865
No 187
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.68 E-value=8.6 Score=50.90 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCC
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGD 604 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~ 604 (2054)
++...+.-|+..+...-.+-++..+ .++.+++.|..+++..+|..|...|..++.+.. .++...|++||..+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 5889999999999988877776544 478999999999999999999999999998743 56789999999998
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc---cCCHHHHHHHHHHHH
Q 000145 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN---SSNEENQEYAASVLA 662 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk---s~s~evre~Aa~ALa 662 (2054)
++.....+..+|..+....+. +.+..+..-+. ++++.+|+.+...|.
T Consensus 109 d~~E~~~v~~sL~~ll~~d~k-----------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQDPK-----------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887777778888776643221 23555555444 568888998887664
No 188
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=82.16 E-value=6 Score=47.60 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 232 AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 232 vq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
....|+++|.-+|.-|+..+..+.....+..++.++.......++..+..+|..+..+++.+.+.+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567899999999999999999999999999999975667889999999999999999999999999999999999998
Q ss_pred CCch
Q 000145 312 APSK 315 (2054)
Q Consensus 312 s~s~ 315 (2054)
+.+.
T Consensus 187 ~~~~ 190 (257)
T PF08045_consen 187 SKST 190 (257)
T ss_pred cccc
Confidence 8663
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.88 E-value=9.2 Score=52.16 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=103.3
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
.++|.+++........++..-..+|.++....+..-.... -....+.|++-+.-+|..+|-.+...+.-+....+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~---~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ---FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc---hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 4678888888877777777777888877654443211111 1234666777777789999888888887775532222
Q ss_pred hhhhhhCCCHHHHHHHhccCC---HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 672 CGSLATDEIVNPCMRLLTSNT---QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs---~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
...- -.-.+|.+..+-++.+ ..+|..|..+|..|.+-.|. .+-.-.+..+++.|++.|.+..--||++|+.+=
T Consensus 944 ~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~---~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT---KSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC---cccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1111 1234566666655544 57899999999999874454 222234456889999999998888999999988
Q ss_pred HHhh
Q 000145 749 ANLL 752 (2054)
Q Consensus 749 ~NLa 752 (2054)
.+|.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 8775
No 190
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=47 Score=43.39 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=103.0
Q ss_pred hHhhhhhcCCHHHHHHHHHHHH--HHhcCChhHHHHHHHcCChHHHHHh-hccCChhHHHHHHHHHHHHHHhhchhhHHH
Q 000145 520 PLVQLLEAGSQKAREVAAHVLW--ILCCHSEDIRACVESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAADSATINQ 596 (2054)
Q Consensus 520 ~LV~LL~s~s~~Vre~AA~aL~--nLa~~sd~~r~~I~e~GaI~aLV~L-LkS~~~evq~~AA~AL~nLs~~~e~~~Ip~ 596 (2054)
.+-++|.+.++-.|...+..++ +.... ..+++..|+.. ..+++.++|+.|+.+|+-++..+. ..++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-~~lv~ 589 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-DLLVG 589 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-chhhH
Confidence 3445666667777776654433 33322 25678888876 677889999999999998876643 45555
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh-cChhhhhh
Q 000145 597 LLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS-MRQDICGS 674 (2054)
Q Consensus 597 Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas-~~~e~r~~ 674 (2054)
.+++|. +.+++|+..++-+|+..+..... .-++..|-.++.+.++-+|+.|.-++.-+.. ++++.-..
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~----------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGD----------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCcc----------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 566665 56788888888888866533222 2247777778888899999999988887753 33333222
Q ss_pred hhhCCCHHHHHHHhccCCHHH
Q 000145 675 LATDEIVNPCMRLLTSNTQMV 695 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~v 695 (2054)
+ .++++.+.++..+.++..
T Consensus 660 v--~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 660 V--KRIIKKFNRVIVDKHESG 678 (926)
T ss_pred H--HHHHHHHHHHHhhhhHhH
Confidence 2 356777788887766543
No 191
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.59 E-value=2.6 Score=44.90 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=58.3
Q ss_pred CChhhHHhhhh-cCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 724 GDVKPLIKLAK-TSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 724 gaV~~Lv~LL~-s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
..++.|+++|. +.++.+..-||.=|+.++. .|..+..+.+.|+=..+.++|.+.++++|..|..++..+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 37888999994 4566666678888888886 788888888889999999999999999999999999888754
No 192
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.51 E-value=22 Score=47.84 Aligned_cols=162 Identities=13% Similarity=0.148 Sum_probs=95.3
Q ss_pred cHHHHHHHHccC----CHHHHHHHHHHHHHh----ccCchhHHHHHhcCChHHHHHhhcc----CCHHHHHHHHHHHHHH
Q 000145 85 AMPLFISILRSG----TPLAKVNVAATLSVL----CKDEDLRLKVLLGGCIPPLLSLLKS----ESTDTRKAAAEALYEV 152 (2054)
Q Consensus 85 gVp~LV~LLks~----s~evr~~AA~vL~~L----s~~ee~r~~v~~~GaIp~LV~LL~s----ed~eVr~aAa~AL~nL 152 (2054)
.+..+..+++++ .+.++..+.-.++.+ |.+.+..........++.+.+.|.. ++.+.+...+++|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666677653 344555555444444 4333322111223455666665543 4677788889999998
Q ss_pred hcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CH
Q 000145 153 SSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NA 230 (2054)
Q Consensus 153 S~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~ 230 (2054)
... . .++.|...+.........++..|+.+|+.+....+.. .-+.+..+..+. ++
T Consensus 474 g~~----~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 474 GHP----S-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred CCh----h-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCCh
Confidence 851 1 5666777776333345678999999999987644433 456667766554 47
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHH
Q 000145 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASA 279 (2054)
Q Consensus 231 evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~A 279 (2054)
++|..|+.+|.. .+|. ...+..+...+..+.+..|+...
T Consensus 531 EvRiaA~~~lm~---t~P~-------~~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 531 EVRMAAVLVLME---TKPS-------VALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhcCcHHHHHHh
Confidence 888888766654 2221 23556666666655555555433
No 193
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=81.28 E-value=1.5 Score=46.04 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=33.6
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|.|+|.++.||+. ..|.++.||++.+|+ .-++|+++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~ 41 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDF 41 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-Ccccccccc
Confidence 899999999999965 578899999999997 667788873
No 194
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=80.54 E-value=1.4 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCcchhh-cCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||.-. -|.++.|||+.+++.+ -++|||+.+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~ 58 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK 58 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC
Confidence 68999999999999421 6789999999999765 467888753
No 195
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=79.87 E-value=28 Score=45.35 Aligned_cols=167 Identities=19% Similarity=0.178 Sum_probs=121.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC----CHHHHHHHHHHHHHHhcCCCCCC
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE----STDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~se----d~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
....+..++.+++...+..+...|..++.+......+....++..|.++..+. ..++...++.++..+-.++.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce---
Confidence 45678889999999999999999999999999999999999999999999883 45666777777766654321
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
..-..+...+|.....+...+. .+..+...|+..|.++..+++.....+.+.--++.|+..+...+..++..|...+
T Consensus 161 --vsW~~~~~~fV~~~a~~V~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 --VSWESVSNDFVVSMASYVNAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred --eeeeecccHHHHHHHHHHhhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 0011112224444444443222 3445677899999999999887778888999999999999999999998888888
Q ss_pred HHHHhh-cCCCcchhccc
Q 000145 241 ARLMLA-FGDSIPTVIDS 257 (2054)
Q Consensus 241 ~nLs~~-~~~~r~~i~~s 257 (2054)
..+... .++.|..+.+.
T Consensus 238 nal~~~a~~~~R~~~~~~ 255 (713)
T KOG2999|consen 238 NALFRKAPDDKRFEMAKS 255 (713)
T ss_pred HHHHhhCChHHHHHHHHH
Confidence 877743 23333444333
No 196
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.81 E-value=9.8 Score=53.18 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred hHHHHHHHh----ccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccc
Q 000145 433 AKKVLIGLI----TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 433 ~I~~LI~LL----~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
..|.++..+ ..++++.|..|.-+|+.+.+-+.+.+ ....|.|+..+. ++++.+|.+++.+++-++..-+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 457778888 44679999999999999876543333 235788999887 88999999999999999874222
Q ss_pred hhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
.- .--.+.|.+-|.+.++.+|+.|.-+|.+|..+ .++.-.|-+.-+..++.+++++++.-|-.....|++
T Consensus 995 li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 11345566778899999999999999999873 344458899999999999999998888777777765
Q ss_pred h
Q 000145 588 A 588 (2054)
Q Consensus 588 ~ 588 (2054)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 4
No 197
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.55 E-value=21 Score=44.08 Aligned_cols=172 Identities=19% Similarity=0.133 Sum_probs=109.7
Q ss_pred chHHHH-HHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc--cc
Q 000145 638 GLRSLV-QVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT--KT 714 (2054)
Q Consensus 638 aI~~LV-~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~--~d 714 (2054)
.++.|+ ..+++.++.+|+.+..+|+-.|-.+.+... ..++.+.+.+..+++.++..|.+++..+...... .+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344554 567888999999999999998875554333 2356677777778999999999999888762211 11
Q ss_pred chhH---HHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC----CCHHHHHHHHH
Q 000145 715 TNKM---SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE----GTSEGKKNASR 787 (2054)
Q Consensus 715 ~~r~---~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s----~~~evr~~Aa~ 787 (2054)
.... ..........+.+.+.+.+++++..|+..++-|........ .+..+..|+-.-.+ +++++|+--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1110 12234567778888999999999999999999864322211 13455555543333 34677777777
Q ss_pred HHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc
Q 000145 788 ALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2054)
Q Consensus 788 AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s 821 (2054)
.+-..+..++.+ +.......++.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~----Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPEN----QERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHH----HHHHHHHHHHHHHHHHhC
Confidence 777777755322 222234455555555554
No 198
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.18 E-value=2.8 Score=33.91 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=25.3
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhc
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~ 154 (2054)
+|.+++++++++++||..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999985
No 199
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=78.85 E-value=21 Score=46.51 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=111.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCCh----hhhHHHHHHHHHHhhhccchh
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSE----QHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~----~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
...+...+.++++..|..+...|..++.+ ......++...|+..|.+++.+++. .+....+.+++.+-.+.. ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 34567788888888888888999999888 5666777788999999999998765 355566666666665432 22
Q ss_pred hHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
+.......+...+.+.+.. +..+-..|...|-++...++..+..+.+.--+..|+..++..+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 2222333333444444322 56677788899999988888889999999999999999999999998886666555554
Q ss_pred h
Q 000145 588 A 588 (2054)
Q Consensus 588 ~ 588 (2054)
.
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 4
No 200
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=78.25 E-value=1.7 Score=46.30 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=33.9
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeeccCCC----Ccccceee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
|.|.|+|.++.||+-. .|.++.||+++++++. ..+|+|+.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~ 59 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK 59 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee
Confidence 7899999999999864 7889999999998763 45898875
No 201
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.72 E-value=18 Score=40.90 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH--HHHHHhhhcCcHHHHHHHHcc---------CCHHHHHHHHHH
Q 000145 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE--ARLLIGSHAQAMPLFISILRS---------GTPLAKVNVAAT 107 (2054)
Q Consensus 39 ~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~--ar~~I~~~aGgVp~LV~LLks---------~s~evr~~AA~v 107 (2054)
.....+++.++....+. ..+..|....+..+. .+.++. .||+..|+.+|.. .+.+....+++.
T Consensus 66 ~~p~~~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~--~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C 139 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLE--LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC 139 (187)
T ss_dssp HHHHHHHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-H--HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH----HHHHHHHHHhccCCchHHHHhcc--CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence 44566777776543321 455666655555543 335553 5899999998865 245788889999
Q ss_pred HHHhccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHHh
Q 000145 108 LSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVS 153 (2054)
Q Consensus 108 L~~Ls~~ee~r~~v~~-~GaIp~LV~LL~sed~eVr~aAa~AL~nLS 153 (2054)
|..+.........+.. .+++..|+..|.++++.+|..++..|..+|
T Consensus 140 lkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 140 LKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999887777777775 488999999999999999999999999887
No 202
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.43 E-value=34 Score=45.92 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=75.0
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 84 GgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
|.+.-+++-..+++-.+|..++.+|..++.+...+...+..+....|..=+.+..+.||..|..+|..+-... +++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~--~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP--KDE-- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC--CCC--
Confidence 5566666667778889999999999988764444444444566677776677778899999999999998532 122
Q ss_pred HHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
+..++..+..+++.+.. ..|+.. +|.|+.-++.
T Consensus 161 -----e~~v~n~l~~liqnDpS--~EVRRa---aLsnI~vdns 193 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPS--DEVRRA---ALSNISVDNS 193 (892)
T ss_pred -----cccHHHHHHHHHhcCCc--HHHHHH---HHHhhccCcc
Confidence 12367788888876653 346755 4556655543
No 203
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.42 E-value=3.9 Score=33.06 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
+|.+.+++.+.++++|..|+++|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999986
No 204
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=77.41 E-value=2.3 Score=45.67 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=34.8
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccC----CCCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
.+|.|+|+|.+|.||.- ..|.++.||++++++ .+.++|+|+..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~ 59 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK 59 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec
Confidence 36999999999999964 457889999999974 35678888853
No 205
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=77.37 E-value=63 Score=41.14 Aligned_cols=270 Identities=15% Similarity=0.124 Sum_probs=135.8
Q ss_pred HHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 476 IQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 476 Ip~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
+..+++=++ .....+|+.++.-|+.-+. +++.|..+.+.|....+++.+... +..+-..++.++..+...+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444555444 3344678888888877777 688999999999999999998544 4435555544554443333333444
Q ss_pred HHHcCChHHHHHhhccC-----ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC------C---CcchHHHHHHHHHHH
Q 000145 554 VESAGAVPAFLWLLKSG-----GPKGQDASAMALTKLIRAADSATINQLLALLLG------D---SPSSKAHVIKVLGHV 619 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~-----~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~------~---~~~V~~~a~~AL~~L 619 (2054)
+.+......++.+++.. ..+....... +++... ...+..+.+.+.. . ....+..+..|+-.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL 177 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhh---hhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence 44556666667777711 0010000000 111110 0111111111100 0 001111222222222
Q ss_pred H-----------hhhcchHHHHhhhhcccchHHHHHHhcc----C------------CHHHHHHHHHHHHHHhhcChhhh
Q 000145 620 L-----------TMALQEDLVQKGSAANKGLRSLVQVLNS----S------------NEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 620 a-----------~~~~~~d~~~~~l~~~GaI~~LV~LLks----~------------s~evre~Aa~ALanLas~~~e~r 672 (2054)
. ......+.+++.+...|+++.++..+.. . +-..-+.+.++|-+.+..+.++.
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 1 1112223445557778899999998752 1 11234567777777776667776
Q ss_pred hhhhhC--CCH-HHHHHHhcc---CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh------c-----
Q 000145 673 GSLATD--EIV-NPCMRLLTS---NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK------T----- 735 (2054)
Q Consensus 673 ~~Iv~~--g~V-~~Lv~LL~d---gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~------s----- 735 (2054)
...... +.. ..+..+++. ........+.+.+.|++..++. .+..+...+....+..+.. .
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~---~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~ 334 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS---ACEEFASPKLGQQLGLIVTSFFCVLSLPNYV 334 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc---chHhhhhhHhccchHHHHHhhcccccccccc
Confidence 666554 222 333333332 2234456788888898865543 3333444433333221111 0
Q ss_pred ---CCHHHHHHHHHHHHHhhC
Q 000145 736 ---SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 736 ---~d~~Vre~Al~AL~NLa~ 753 (2054)
..-+...-++++|-||+.
T Consensus 335 ~~~~~~D~~IL~Lg~LINL~E 355 (361)
T PF07814_consen 335 PEESSFDILILALGLLINLVE 355 (361)
T ss_pred cccccchHHHHHHHhHHHhee
Confidence 123344457888888875
No 206
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.09 E-value=4.2 Score=46.08 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=66.0
Q ss_pred HHHHHHHcCcHHHHHHhhCCC------CCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQLNPK------NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNA 236 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~------s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A 236 (2054)
=.+.|++.||+..|++.|..- ...+..+...++++|..+..+..|....+.+.+++..++..|.+++..++..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 356788899999999988521 12344577789999999999998887777888999999999999999999999
Q ss_pred HHHHHHHH
Q 000145 237 ASLLARLM 244 (2054)
Q Consensus 237 ~~aL~nLs 244 (2054)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 207
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=76.93 E-value=96 Score=37.25 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-----CHHHHHHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHH
Q 000145 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILCCHSE-DIRACVESAGAVPAFLW 565 (2054)
Q Consensus 492 ~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-----s~~Vre~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~ 565 (2054)
.++...|..+++ .++.|..+.++..---|-..|... .+-.|-.+.++++.|...++ +.-..+...+.||..++
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 345555555565 589999888886544555566433 56789999999999987544 45666678999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch-HHHHH
Q 000145 566 LLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL-RSLVQ 644 (2054)
Q Consensus 566 LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI-~~LV~ 644 (2054)
.+.++++..+.-|...+..+-.++. . -.+++...-.+.. + ...+ +.+.+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~----------------G-L~YiCqt~eRF~a-------v------~~~L~kmv~~ 225 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDV----------------G-LYYICQTAERFSA-------V------ALVLGKMVFQ 225 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccc----------------c-HHHHHHhHHHHHH-------H------HHHHHHHHHH
Confidence 9999999999888888877754421 1 1111111111110 0 0012 23445
Q ss_pred HhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 645 VLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 645 LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
+.+.++.....+++++..+|+. ++..|..+
T Consensus 226 l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 226 LVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred HhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 6677788999999999999987 56555443
No 208
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=76.70 E-value=1.7 Score=46.69 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCCceEEEEEcCCcchhh------------cCCCccceEeeccCCCCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT------------MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.+|.|.|+|.++.||+.. .|..+.||++.+|+....+|++..+
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~ 56 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK 56 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC
Confidence 479999999999999743 2578999999999877788888653
No 209
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.47 E-value=1.9e+02 Score=35.33 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=106.0
Q ss_pred CCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCCh-------hHHHHHHHcCChHHHHHhhccCCh----hHHHHHHHHH
Q 000145 516 GGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE-------DIRACVESAGAVPAFLWLLKSGGP----KGQDASAMAL 582 (2054)
Q Consensus 516 GaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd-------~~r~~I~e~GaI~aLV~LLkS~~~----evq~~AA~AL 582 (2054)
|..+-+..++-.| ++...+.+...|..|+...+ +.|-.+.=...+|.++.-+.++++ ......|..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5666666666555 66677778888888865322 123333223455666666666661 3455777888
Q ss_pred HHHHHhhchhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHH
Q 000145 583 TKLIRAADSATINQLLALL-LGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2054)
Q Consensus 583 ~nLs~~~e~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~-~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~A 660 (2054)
..++......-+..++... +..-.+...........+... .+. . +...+.-|..++.++.+-+|.....+
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~--~------~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD--H------EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch--h------HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8888664444444443333 333323333333333333211 111 1 12346778889999999999999999
Q ss_pred HHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 661 LanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
|..+.. ..+.+.. ...+.+.++.++++++... +|...|-+..
T Consensus 212 L~~ll~-~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v 253 (262)
T PF14225_consen 212 LKVLLP-HVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEIV 253 (262)
T ss_pred HHHHhc-cccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHHH
Confidence 999987 4444444 5567899999999876543 4555554443
No 210
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=76.29 E-value=2 Score=45.55 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=33.9
Q ss_pred CceEEEEEcCCcchh--h--cCCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--T--MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|+|.|+|.++.||.. . .|.++.||++.+|+ ...+|+|+.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~ 44 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPN 44 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecC
Confidence 899999999999964 4 68899999999974 6788988753
No 211
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=76.16 E-value=2.1 Score=46.09 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=34.2
Q ss_pred CceEEEEEcCCcchhh--c-CCCccceEeeccCCC----Ccccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--M-GTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
|.|+|+|+++.||+-. . |..+.|||+.+..++ -|+|||+..
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~ 62 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG 62 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC
Confidence 7899999999999643 3 889999999998776 668998854
No 212
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=76.13 E-value=2.5 Score=45.71 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=34.8
Q ss_pred CceEEEEEcCCcch-hhcCCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLK-QTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|.|+|.+|.||+ ...|.++.||++.+|+. -.+|||+.+
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~-~~kT~vi~~ 68 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ-EKRTEVIWN 68 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEECCc-cccCceecC
Confidence 89999999999997 45678899999999865 889999864
No 213
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=76.03 E-value=2.2 Score=46.15 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.3
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
|.|+|+|+++.||+. .-|..+.||++++++| ..++|+|+.+
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~ 60 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC
Confidence 789999999999964 4688999999998544 3468888764
No 214
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.99 E-value=54 Score=44.84 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhc--------chHHHHHHHhc----cCCHHHHHHHHHHHHHhcccCccchhhhhccc
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHA--------EAKKVLIGLIT----MATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~--------g~I~~LI~LL~----ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~g 474 (2054)
+-.+|...|+-+..-++++..+.+. .|+..++..-. -.+++++..|...+.++.+..+++|..++..-
T Consensus 625 ~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v 704 (1516)
T KOG1832|consen 625 LLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAV 704 (1516)
T ss_pred HHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhc
Confidence 4456666666555666777666542 23333333221 13689999999999999998777776543211
Q ss_pred cH----HHHHhhhcCCC-hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-----CHHHHHHHHHHHHHHh
Q 000145 475 GI----QLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2054)
Q Consensus 475 gI----p~LV~LL~s~d-~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-----s~~Vre~AA~aL~nLa 544 (2054)
+- +.. .+..+. ....++... .-+..+...+||..|++||.-. -..+|..|+.+|..|+
T Consensus 705 ~S~~g~~r~--~l~~~~ks~~le~~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLa 772 (1516)
T KOG1832|consen 705 GSQSGDRRI--FLGAGTKSAKLEQVLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLA 772 (1516)
T ss_pred cccCCCccc--cccCCCchHHHHHHHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccc
Confidence 10 000 011000 011111222 2234455678999999999754 3578999999999999
Q ss_pred cCChhHHHHHHH
Q 000145 545 CHSEDIRACVES 556 (2054)
Q Consensus 545 ~~sd~~r~~I~e 556 (2054)
.+ +.+|.++.+
T Consensus 773 R~-~tVrQIltK 783 (1516)
T KOG1832|consen 773 RD-DTVRQILTK 783 (1516)
T ss_pred cC-cHHHHHHHh
Confidence 84 667777654
No 215
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=75.81 E-value=2.1 Score=45.46 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=32.6
Q ss_pred CceEEEEEcCCcchh-hcCCCccceEeeccCCCCc----ccceee
Q 000145 2010 GCLTVTIKRGNNLKQ-TMGTTNAFCRLTIGNGPPR----QTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 2049 (2054)
|.|+|+|.++-||.. .-|.++.|||+.++.++.+ +|||+.
T Consensus 12 ~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~ 56 (119)
T cd08685 12 RKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVP 56 (119)
T ss_pred CEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCcccc
Confidence 679999999999943 2477899999999987654 688874
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.61 E-value=27 Score=46.45 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=99.6
Q ss_pred HHHHHHhcc----CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchh
Q 000145 435 KVLIGLITM----ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 435 ~~LI~LL~s----sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
|.....+.+ +++..|..|.-.|..+-+-+.+.. ...+|.|+..+. +++|.+|.+|+.+|+.+..+-....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 334455554 678888888888877655422222 246789998776 8899999999999888765211111
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
..-..-|.+-|.+.+.++|+.|..++.+|...+. +.-.|-.+.+..+|.+++.++..-|-..+..++..+
T Consensus 970 -----de~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 970 -----DEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred -----HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 1123456677788899999999999999976322 122678888999999999999988888888887654
No 217
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.74 E-value=37 Score=46.10 Aligned_cols=163 Identities=15% Similarity=0.209 Sum_probs=93.0
Q ss_pred HHHHHHHHcc----CCHHHHHHHHHHHHHh----ccCc------hhHHHHHhcCChHHHHHhhc----cCCHHHHHHHHH
Q 000145 86 MPLFISILRS----GTPLAKVNVAATLSVL----CKDE------DLRLKVLLGGCIPPLLSLLK----SESTDTRKAAAE 147 (2054)
Q Consensus 86 Vp~LV~LLks----~s~evr~~AA~vL~~L----s~~e------e~r~~v~~~GaIp~LV~LL~----sed~eVr~aAa~ 147 (2054)
+..+..++++ +++.++..|.-.++.+ |... ...........++.+...|. .+|.+.+..+++
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555554 2455666666555554 3331 11111222345667776665 257888999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhcc
Q 000145 148 ALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS 227 (2054)
Q Consensus 148 AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s 227 (2054)
+|+|+.. . ..++.|...+.........++..|+.+|+.+....... ..+.+..+..+
T Consensus 513 aLgN~g~-----~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n 569 (618)
T PF01347_consen 513 ALGNLGH-----P----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMN 569 (618)
T ss_dssp HHHHHT------G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-
T ss_pred HhhccCC-----c----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcC
Confidence 9999984 1 27888999888774455678889999999886655433 45677777765
Q ss_pred C--CHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHH
Q 000145 228 D--NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD 281 (2054)
Q Consensus 228 ~--s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~ 281 (2054)
. +.++|..|..+|.. .+|. ...+..+...+...++..+......
T Consensus 570 ~~e~~EvRiaA~~~lm~---~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 570 TTEDPEVRIAAYLILMR---CNPS-------PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp TTS-HHHHHHHHHHHHH---T----------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 4 46788888666644 2221 2356666777765555555544443
No 218
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=74.30 E-value=2.7 Score=44.26 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCceEEEEEcCCcchh---hcCCCccceEeeccCC----CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+. .-|..+.||++.+.++ ..++|+|+.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~ 61 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN 61 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC
Confidence 5889999999999974 4578999999998543 4578998754
No 219
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=73.40 E-value=3.1 Score=44.94 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
+|.|+|+|.++.||+- .-|..+.||+++++.| +.++|+|+..
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~ 61 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR 61 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC
Confidence 5899999999999975 4678899999999533 3568998863
No 220
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=73.29 E-value=3.2 Score=43.95 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeec--cCCCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTI--GNGPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+. ..|..+.||++.+ +++..++|+|+.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~ 60 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK 60 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC
Confidence 3789999999999974 4577899999999 5567899999853
No 221
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=73.27 E-value=3.3 Score=45.36 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCcchhh----cCCCccceEeeccCCCCc----ccceee
Q 000145 2009 PGCLTVTIKRGNNLKQT----MGTTNAFCRLTIGNGPPR----QTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~ 2049 (2054)
-|.|+|+|+++.||+.. .|+.+.|+|++++.+.-| +|+|+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k 62 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK 62 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee
Confidence 37799999999999865 367899999999987644 788875
No 222
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.13 E-value=75 Score=41.37 Aligned_cols=155 Identities=12% Similarity=0.033 Sum_probs=94.4
Q ss_pred cccchHHHHHHh----ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCC
Q 000145 635 ANKGLRSLVQVL----NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 635 ~~GaI~~LV~LL----ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s 709 (2054)
+.|.+..++..+ ++++...|..|++.|.|..++.|+-+.... ...+..++.-| .+.+.+|...+..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 344554444433 455788999999999999986444433322 23445555544 445788999999999887751
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHh--cCcHHHHHHHHcCCCHHHHHHH
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLL--EDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~--~g~I~~LV~LL~s~~~evr~~A 785 (2054)
.. +++....+ ..+.-.+..+..+.+++++-.|...++.|+. ..+++..+.+ .+...+++-.+.+.+|.+-. |
T Consensus 331 ~~-~~~l~~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-A 406 (533)
T KOG2032|consen 331 AS-NDDLESYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-A 406 (533)
T ss_pred hh-hcchhhhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-H
Confidence 11 11222111 1244457778889999999998888888764 3444444332 23344555556677776654 6
Q ss_pred HHHHHHhhh
Q 000145 786 SRALHQLLK 794 (2054)
Q Consensus 786 a~AL~nL~~ 794 (2054)
++...+.|.
T Consensus 407 Cr~~~~~c~ 415 (533)
T KOG2032|consen 407 CRSELRTCY 415 (533)
T ss_pred HHHHHHhcC
Confidence 666666665
No 223
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=72.42 E-value=4.2e+02 Score=37.33 Aligned_cols=174 Identities=10% Similarity=0.109 Sum_probs=108.4
Q ss_pred cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHh
Q 000145 443 MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2054)
Q Consensus 443 ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV 522 (2054)
+..+-++..|+.+++..++. ...... ..+.+..|.++....+.++-.--+.+|+..+..+++.... .++...|.++
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~--~vl~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i 577 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKV--KVLLSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTI 577 (1005)
T ss_pred CCCCchhHHHHHHHHhccCc--eecccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHH
Confidence 34466677777777777632 221111 2355677888888778888888888898888865554332 2334555555
Q ss_pred hhh-h-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCC----hhHHHHHHHHHHHHHHhhc------
Q 000145 523 QLL-E-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG----PKGQDASAMALTKLIRAAD------ 590 (2054)
Q Consensus 523 ~LL-~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~----~evq~~AA~AL~nLs~~~e------ 590 (2054)
.+. + +.||.+...+-..+-.|... ..+..-+ ....+|.++..+.... +.....+...|.-+.+...
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQI-AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 543 2 44787777777777777652 2221111 2457899999988765 5666677777776665532
Q ss_pred --hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhh
Q 000145 591 --SATINQLLALL-LGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 591 --~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~ 622 (2054)
.-+.|++.+.. .+++...-..+.+||+.+...
T Consensus 656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 22456666654 455556667788899887644
No 224
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.23 E-value=1.8e+02 Score=40.33 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHhhCCh-HHH-----------------------------------HHHHhcCcHHHHHHHHcCCC-
Q 000145 736 SSIDAAETAVAALANLLSDP-DIA-----------------------------------AEVLLEDVVSALTRVLAEGT- 778 (2054)
Q Consensus 736 ~d~~Vre~Al~AL~NLa~~~-e~r-----------------------------------~~Iv~~g~I~~LV~LL~s~~- 778 (2054)
.+++++..|+.++.|+.+-| +.| ..+...+||..|++++.-..
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 47899999999999995533 111 12234568999999887553
Q ss_pred ----HHHHHHHHHHHHHhhhcCCC
Q 000145 779 ----SEGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 779 ----~evr~~Aa~AL~nL~~~~~~ 798 (2054)
+.+|..|+.+|.-|+.+..+
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHH
Confidence 47899999999999987543
No 225
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=72.13 E-value=3.5 Score=44.14 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCcchhh---cCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT---MGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
-|.|+|+|+++.||.-. -|..+.|+|+.+..+. -|+|||+.+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN 62 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC
Confidence 47899999999999753 3789999999996443 568998864
No 226
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=72.11 E-value=3.5 Score=43.62 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeec--cCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTI--GNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2050 (2054)
+.|+|+|.++.||+. .-|..+.||++.+ +++..++|+|+..
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~ 60 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK 60 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC
Confidence 579999999999965 3678899999999 3456789999763
No 227
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.04 E-value=89 Score=43.10 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=111.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHH-hc
Q 000145 524 LLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLAL-LL 602 (2054)
Q Consensus 524 LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~L-L~ 602 (2054)
.+.++-+.+|..+...|+.+.... +....+...+.+......+++.++-+--+|...+..|+.--+..++|-+.+. .+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLS 813 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 344556677888888898887643 3334444577788888999999998888888877777766555677777763 33
Q ss_pred CCCc---chHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000145 603 GDSP---SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2054)
Q Consensus 603 ~~~~---~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g 679 (2054)
..+. +.+..+-+++..+..-. .+.+.+.. .-.+.......++++.+-|..+...++++|....-.-.. +-..
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~--Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e 888 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQAL--GELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE 888 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHh--ccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence 2221 22333445555543211 11111110 123555556667677788999999999998631100011 1122
Q ss_pred CHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCC
Q 000145 680 IVNPCMRLLT-SNTQMVATQSARALGALSRPTK 711 (2054)
Q Consensus 680 ~V~~Lv~LL~-dgs~~vr~~AA~AL~nLs~s~~ 711 (2054)
.+..++.+.+ ++++.+|+.|+..+..+..+..
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 3344444443 6788999999999999987543
No 228
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=71.49 E-value=3.7 Score=43.91 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCcchh--hc-CCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TM-GTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||.- .. |..+.|+|+.+.+++ -++|||+.+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK 62 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC
Confidence 3689999999999953 34 789999999997654 478999853
No 229
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=70.99 E-value=3.7 Score=43.44 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCC--CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+. ..|.++.||++.++++ ..++|+|+.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~ 60 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK 60 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC
Confidence 4789999999999964 4678899999999754 3458998753
No 230
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=70.83 E-value=2.8 Score=45.70 Aligned_cols=39 Identities=33% Similarity=0.687 Sum_probs=33.4
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|+|+|.+|.||+- ..|..+.||++.+|+- ...|+|+.
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~-~~kT~vi~ 55 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ-EHKTKVVS 55 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-eeeccccC
Confidence 789999999999975 4688899999999864 57888875
No 231
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=70.81 E-value=4 Score=43.92 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCcchh--hc-CCCccceEeeccCCC--Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TM-GTTNAFCRLTIGNGP--PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 2050 (2054)
.+.|+|+|.++.||+. .. |..+.||++.++++. .++|||+.+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~ 61 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK 61 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC
Confidence 4689999999999975 34 778999999997543 347998854
No 232
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=70.27 E-value=2.6e+02 Score=34.12 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHhcccCccchhhhhcc-ccHHHHH----hhh---cCCC--h---hhhHHHHHHHHHHhhhccchhh
Q 000145 444 ATADVREYLILSLTKLCRREVGIWEAIGKR-EGIQLLI----SLL---GLSS--E---QHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 444 sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~-ggIp~LV----~LL---~s~d--~---~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.+++.++.|..-|..--...++..-.+-.. |.+..|+ ..+ ..++ . .-..+|+..|..++. +++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 356667776665554433323333333322 3333332 222 2221 1 123456666666777 699999
Q ss_pred HHHhhCCCchHhhhhhcC-----CHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHH
Q 000145 511 AITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~-----s~~Vre~AA~aL~nLa~~s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~n 584 (2054)
.+.++...--|...|+.. .+.+|-.+.++++.|...+ .+.-..+.+.+.+|..++.++.++.-.+.-|...+.+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999998777777777654 2567899999999998743 3456677788999999999999998888888888888
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHH-HHhccCCHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV-QVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV-~LLks~s~evre~Aa~ALan 663 (2054)
+-.+++ ++... . ..++-...+.. .+..+| .+.+..++..-.+..++...
T Consensus 166 IL~dd~--GL~yi---C--~t~eRf~av~~-----------------------vL~~mV~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 166 ILLDDV--GLNYI---C--QTAERFFAVAM-----------------------VLNKMVEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HHHSHH--HHHHH---T--SSHHHHHHHHH-----------------------HHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHcchh--HHHHH---h--cCHHHHHHHHH-----------------------HHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 866532 00000 0 00111111111 233333 34566788888999999999
Q ss_pred HhhcChhhhhhh
Q 000145 664 LFSMRQDICGSL 675 (2054)
Q Consensus 664 Las~~~e~r~~I 675 (2054)
|+. ++..+.++
T Consensus 216 Lsd-nprar~aL 226 (262)
T PF04078_consen 216 LSD-NPRAREAL 226 (262)
T ss_dssp HTT-STTHHHHH
T ss_pred Hcc-CHHHHHHH
Confidence 987 55555443
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=70.10 E-value=32 Score=39.94 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=68.5
Q ss_pred CcHHHHHHHHccC------CHHHHHHHHHHHHHhccCchhHHHHHhc--CC--hHHHHHhhccCCHHHHHHHHHHHHHHh
Q 000145 84 QAMPLFISILRSG------TPLAKVNVAATLSVLCKDEDLRLKVLLG--GC--IPPLLSLLKSESTDTRKAAAEALYEVS 153 (2054)
Q Consensus 84 GgVp~LV~LLks~------s~evr~~AA~vL~~Ls~~ee~r~~v~~~--Ga--Ip~LV~LL~sed~eVr~aAa~AL~nLS 153 (2054)
..+..|+..+..| ..+--...+.+|.|++..++.|..+... +. +..|+.++.+.+..-|..++.+|.|.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 3678888877662 3455668999999999999999999865 44 778888887788888899999999999
Q ss_pred cCCCCCChhHHHHHHH---cCcHHHHHHhhCC
Q 000145 154 SGGLSDDHVGMKIFVT---EGVVPTLWDQLNP 182 (2054)
Q Consensus 154 ~~~~nk~~~~re~Iv~---aG~Vp~Lv~LL~s 182 (2054)
.. ...-..+.. .+++|.|+--|..
T Consensus 132 Fd-----~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 132 FD-----TDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred cc-----HhHHHHhcCchhhhhHHHHHhhccC
Confidence 73 222344443 2455655555553
No 234
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=70.05 E-value=3.3 Score=44.17 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=32.2
Q ss_pred eEEEEEcCCcch--hhcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|+|+|.++.||+ ..-|.++.||++.+|+. .++|+|+.+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-~~rT~v~~~ 41 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ-KKRTRTKPK 41 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-EecceeEcC
Confidence 899999999996 35688999999999974 578998853
No 235
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=70.00 E-value=1.8e+02 Score=37.48 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=75.3
Q ss_pred hHHHHhhhccC---CHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc-c--CCChhHHHHHHHHHHHHhhccH
Q 000145 218 VDIIVGLLSSD---NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-Q--NNDISVRASAADALEALSSKSI 291 (2054)
Q Consensus 218 I~~LV~LL~s~---s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~-s--~~d~~Vr~~Aa~aL~nLs~~s~ 291 (2054)
...|...+... -+.+-..|+.++..+.+.+|..-..+.+.|.++.++..+. . .+..++-..-..++..++- |.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~ 186 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN 186 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence 34444455443 3678888999999999999999999999999999999887 3 2445666667778888888 57
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCc
Q 000145 292 KAKKAVVAADGVPVLIGAIVAPS 314 (2054)
Q Consensus 292 e~Rk~I~eaggL~~LIeLL~s~s 314 (2054)
.-.+.+.+.+.++.+++.+.++.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCHH
Confidence 88888999999999999987754
No 236
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.04 E-value=20 Score=40.51 Aligned_cols=88 Identities=26% Similarity=0.294 Sum_probs=68.2
Q ss_pred HHHHhhcCChhhHhHHHHHHHHHhcc---hhhHHHhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhh---cCCccc
Q 000145 1853 VQELLLSTNAEVAGQAALLTKFLFSN---HTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFM---NFPKLH 1926 (2054)
Q Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1926 (2054)
+..|+.|++++.=-=+..++|-++.+ ..+.++. ...+|.|...||+ =...++-+-..++|+.||. .||.|
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~~p~l- 105 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRGKPTL- 105 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCCCch-
Confidence 67889999998888888899988887 3453444 6789999999999 2333455677888998885 67877
Q ss_pred ccccchhhhhHHHhhhcc
Q 000145 1927 TSEAATLCIPHLVGALKS 1944 (2054)
Q Consensus 1927 ~~~~~~~~~~~~~~~~~~ 1944 (2054)
.-|.+|-.+|-+++++=.
T Consensus 106 ~Rei~tp~l~~~i~~ll~ 123 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQ 123 (165)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 568899999999887644
No 237
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.02 E-value=3.1e+02 Score=34.51 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=116.4
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhh-cChhhhhhhhhC-C-CHHHHHHHhcc----CC---------HHHHHHHHHH
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFS-MRQDICGSLATD-E-IVNPCMRLLTS----NT---------QMVATQSARA 702 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas-~~~e~r~~Iv~~-g-~V~~Lv~LL~d----gs---------~~vr~~AA~A 702 (2054)
++.+...+.+........+.+.|.+++. ........+.+. + -.+.+.+++.. .. +.+|....+-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777788888888888899999999988 565677776654 2 24556666632 11 2778887777
Q ss_pred HHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh-hCCh----HHHHHHHhcCcHHHHHHHHcCC
Q 000145 703 LGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL-LSDP----DIAAEVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 703 L~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL-a~~~----e~r~~Iv~~g~I~~LV~LL~s~ 777 (2054)
+..+....+. ...+.-+.+.+.+..+.+-|..++.++....+.+|..= ..++ ..+..+..+..+..|+.+....
T Consensus 138 ~Lsfl~~~~~-~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDP-ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCH-HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 6666653222 13444456677888899999999999999999999854 3343 3455677888999999988877
Q ss_pred CH----HHHHHHHHHHHHhhhcCCC
Q 000145 778 TS----EGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 778 ~~----evr~~Aa~AL~nL~~~~~~ 798 (2054)
++ .+++.+-..|..+|.+...
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCc
Confidence 77 8999999999999987654
No 238
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.96 E-value=2.3e+02 Score=37.22 Aligned_cols=251 Identities=16% Similarity=0.087 Sum_probs=123.3
Q ss_pred ccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH-hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCc-
Q 000145 442 TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIP- 519 (2054)
Q Consensus 442 ~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV-~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp- 519 (2054)
.+++...+.-|+..|.+.+...++....-.. --+..++ .++...+.+|+..++.+|..+... ..++. ...+-++
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~~--l~~~~l~i 343 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASNDD--LESYLLNI 343 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhcc--hhhhchhH
Confidence 4455677888889999988774443322221 1233334 466666788999999998877652 11111 1112222
Q ss_pred --hHhhhhhcCCHHHHHHHHHHHHHHhcCC-hhHHHHHHH--cCChHHHHHhhccCChhHHHHHHHHHHHHH----Hhhc
Q 000145 520 --PLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVES--AGAVPAFLWLLKSGGPKGQDASAMALTKLI----RAAD 590 (2054)
Q Consensus 520 --~LV~LL~s~s~~Vre~AA~aL~nLa~~s-d~~r~~I~e--~GaI~aLV~LLkS~~~evq~~AA~AL~nLs----~~~e 590 (2054)
.+..+.++.+++.|..+...++.|+.-. ...++.+.+ .+...+++-.+.+.+|.+-..+-..+.-+. ....
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHH
Confidence 3445567889999999988877775421 122333321 334455666677788765544433333221 1111
Q ss_pred hhhHHHHHHHhcCCCcchHH-HHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc-C
Q 000145 591 SATINQLLALLLGDSPSSKA-HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-R 668 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~-~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~-~ 668 (2054)
.+..+.. +..+-...+. +.-+|.- +.+ .++|.... .......+++++-+.+|+.+..--.+.... .
T Consensus 424 ~~~~q~~---ld~~~~~~q~Fyn~~c~~-L~~--i~~d~l~~------~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 YHLFQES---LDTDMARFQAFYNQWCIQ-LNH--IHPDILML------LLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HHHHhhh---hHHhHHHHHHHHHHHHHH-Hhh--hCHHHHHH------HHHhchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 1111111 1111001111 0111111 110 11111100 122233344444456676666544444321 1
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 669 ~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+..+...-..-....+-.+.++.-++++..|..|+..+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 1112221112234556667778889999999999887753
No 239
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=68.87 E-value=4.2 Score=43.27 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=31.6
Q ss_pred eEEEEEcCCcchhhcCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|+|.++.||+.. .++.||++.+|+ ..++|||+.
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~~-~~~kT~v~~ 36 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKLGN-YKGSTKAIE 36 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEECC-ccccccccC
Confidence 89999999999887 789999999997 578999975
No 240
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.72 E-value=5.1e+02 Score=36.86 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCC------CCCCChhHHHHHHHHHHHHhcC--CCchhHHHHh
Q 000145 143 KAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP------KNKQDNVVQGFVTGALRNLCGD--KDGYWRATLE 214 (2054)
Q Consensus 143 ~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s------~s~~d~~V~e~Al~aL~nL~~~--~e~r~~aI~e 214 (2054)
.+|...|..+++ +.+++.+ .|.++.+++.+.+ ++ .+..-.+-|+++++++|.- +....+...+
T Consensus 390 ~Aa~~~l~~~~~------KR~ke~l--~k~l~F~~~Il~~~~~~~~~~-~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE 460 (1010)
T KOG1991|consen 390 TAALDFLTTLVS------KRGKETL--PKILSFIVDILTRYKEASPPN-KNPRQKDGALRMVGSLASILLKKSPYKSQME 460 (1010)
T ss_pred HHHHHHHHHHHH------hcchhhh--hhHHHHHHHHHHhhcccCCCc-cChhhhhhHHHHHHHHHHHHccCCchHHHHH
Confidence 356666666664 2223333 4578888888872 22 2223345677777777742 1222234444
Q ss_pred hCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHH
Q 000145 215 AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAK 294 (2054)
Q Consensus 215 aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~R 294 (2054)
.--+..+...+.++.--.|..||++++..+.. +......-..++....+.|.++++.+++..|+.+|..+.+++..+.
T Consensus 461 ~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~ 538 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSPYGYLRARACWVLSQFSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQAD 538 (1010)
T ss_pred HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhh
Confidence 44566667777787778999999999998832 2223333345666667777767889999999999999988655554
Q ss_pred HHHHh--cCCHHHHHHhhcC
Q 000145 295 KAVVA--ADGVPVLIGAIVA 312 (2054)
Q Consensus 295 k~I~e--aggL~~LIeLL~s 312 (2054)
..+.. .+.++.|+.+.+.
T Consensus 539 e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHh
Confidence 44433 3445555555544
No 241
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=67.28 E-value=4.9 Score=43.00 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=33.6
Q ss_pred CCceEEEEEcCCcchhhcCCCccceEeeccCC---CCcccceee
Q 000145 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNG---PPRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 2049 (2054)
-|.|+|+|.++.||+ ..|+..-|+|+.++.+ .-+||+|..
T Consensus 13 ~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 13 KAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 588999999999999 6688899999999754 467788754
No 242
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=5.5e+02 Score=36.50 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHH
Q 000145 758 AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVA 837 (2054)
Q Consensus 758 r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa 837 (2054)
.++|...|++..|++.+-...++.+-.-...|..+..-+|.+......++|-+....++--..+|..+- ...++....
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspf--LshalkIve 978 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPF--LSHALKIVE 978 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchH--hhccHHHHH
Confidence 467888899999999988889999999999999999888887777766555434333333333444332 344444444
Q ss_pred HHh
Q 000145 838 LLA 840 (2054)
Q Consensus 838 ~La 840 (2054)
+|.
T Consensus 979 mLg 981 (2799)
T KOG1788|consen 979 MLG 981 (2799)
T ss_pred HHh
Confidence 443
No 243
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=66.77 E-value=4.6 Score=42.79 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=32.5
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|.|+|.++.||+. ..|.++.||++.+|+ ..+.|+|+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~ 41 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAK 41 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcC
Confidence 889999999999986 357899999999985 456777764
No 244
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=66.52 E-value=4.1 Score=43.05 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=32.5
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|+|++|.||+. ..|..+.||++.+|+.+..+|+++.
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~ 41 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY 41 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc
Confidence 7999999999964 4688999999999876778888864
No 245
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.46 E-value=43 Score=44.86 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=100.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhh-h---CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 641 SLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA-T---DEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 641 ~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv-~---~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.|..-|+..|.++|-+|+..+.++.-...++..+.. + +.-...|..+|++.-+.+|..|...+.+...-+.+ -.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe--~i 255 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE--MI 255 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH--Hc
Confidence 344566778999999999999998654333221111 1 23346778899999999999998888887652222 00
Q ss_pred hHHHHhcCChhhHH-hhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 717 KMSYIAEGDVKPLI-KLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv-~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
-..++. +.+..+. .+.++.+.+||......|..+..+|.....+.. ++|.+-..|.+....+|-++...|..+-..
T Consensus 256 P~~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 000000 1111222 223446678888999999999888876555433 677777888999999999999999988764
No 246
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.05 E-value=91 Score=42.36 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
..+.|..+++..+ -++.-+..+-|+-..-......-+...+++-|..-+.+.+..++..+...+...+...+
T Consensus 350 ~~p~l~pi~~~~~--~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD------ 421 (700)
T KOG2137|consen 350 MLPALKPIYSASD--PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID------ 421 (700)
T ss_pred hhHHHHHHhccCC--cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc------
Confidence 3566666665321 12222333333311112222233445667777888888899999999999888876332
Q ss_pred HHHHhcCChhhHHhh-hhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 718 MSYIAEGDVKPLIKL-AKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~L-L~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
...+..-+++.|-.+ ++..+..++..++.|++-+. +..+...--+-+.++.++.+..++.+......+..++....
T Consensus 422 ~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 422 VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 233444466666555 45578899999999999887 22222222235677788888899999999999999998877
Q ss_pred CCc-hhHhhhhhhhhhHHHHHHhhccCC
Q 000145 797 PVG-DVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 797 ~~~-e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
+.+ +.+. +..++.++.+...+.
T Consensus 499 ~~g~ev~~-----~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 499 YSGVEVMA-----ENVLPLLIPLSVAPS 521 (700)
T ss_pred ccceeeeh-----hhhhhhhhhhhhccc
Confidence 653 2222 345566666665443
No 247
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=65.03 E-value=4.5 Score=42.10 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=31.1
Q ss_pred eEEEEEcCCcchh---hcCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQ---TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|+|.+|.||+. +-|..+.||++++|+ ...+|+|+.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~ 40 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVK 40 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceec
Confidence 6899999999964 246678999999997 788899985
No 248
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=64.98 E-value=5.9 Score=41.92 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCC----Ccccceee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
++.|+|+|.+|.||+. ..|.++.||++.+.+++ ..+|+|+.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~ 60 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH 60 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec
Confidence 4789999999999964 34788999999985443 57788874
No 249
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=64.60 E-value=6.2 Score=41.05 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.6
Q ss_pred eEEEEEcCCcchhhcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|+|.++.||+ -|..+.||++++||- .++|+++..
T Consensus 6 l~V~v~~a~~L~--~~~~dpyv~v~~~~~-~~kT~~~~~ 41 (111)
T cd04011 6 VRVRVIEARQLV--GGNIDPVVKVEVGGQ-KKYTSVKKG 41 (111)
T ss_pred EEEEEEEcccCC--CCCCCCEEEEEECCE-eeeeeEEec
Confidence 789999999999 588999999999965 678998763
No 250
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=64.03 E-value=24 Score=40.95 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhHHHHHHHc----------------CcHHHHHHhhCCC---CCCChhHHHHHHHHHHH
Q 000145 140 DTRKAAAEALYEVSSGGLSDDHVGMKIFVTE----------------GVVPTLWDQLNPK---NKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 140 eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a----------------G~Vp~Lv~LL~s~---s~~d~~V~e~Al~aL~n 200 (2054)
..-..++..|.||+. ...++..+.+. ..+..|++.+..+ ......-..+...+|.|
T Consensus 10 ~~adl~~MLLsNlT~-----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 10 PLADLACMLLSNLTR-----SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred chHHHHHHHHHHhcc-----chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345567778888875 34445544322 3667777777651 11112346788999999
Q ss_pred HhcCCCchhHHHHhhC-C--hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcc--cchHHHHHHHhc
Q 000145 201 LCGDKDGYWRATLEAG-G--VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID--SGAVKALVQLVG 268 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaG-G--I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~--sGaL~~LL~LL~ 268 (2054)
++...++|.-.+-..- . +..|+.+..+.+..-|..++.++-|.|.....+...+.+ .+.+++|+.-+.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999965554433 3 677888888888888899999999999654443333332 467777777665
No 251
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=63.93 E-value=25 Score=48.34 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=107.1
Q ss_pred HHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhccCCHHHHHHHHHHHHHH
Q 000145 75 ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL--GGCIPPLLSLLKSESTDTRKAAAEALYEV 152 (2054)
Q Consensus 75 ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~--~GaIp~LV~LL~sed~eVr~aAa~AL~nL 152 (2054)
.|+.+. ...+|.|++...+.+...|.+=...|.++-.+-.. +.+.- ....|.|++.|+-+|.++|-.+.+++..+
T Consensus 860 ykQRfF--~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 860 YKQRFF--CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHHHH--HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 455444 36899999999977777888888888776554333 33322 25678888889889999999999998877
Q ss_pred hcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHH
Q 000145 153 SSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAA 232 (2054)
Q Consensus 153 S~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~ev 232 (2054)
-.- .+. -.----.-.||.++.+-.+.++.-..+++.|+.+|..|...-+.+.-.-.+...+..|.+.|+++-.-+
T Consensus 937 l~~----~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlV 1011 (1030)
T KOG1967|consen 937 LTE----SET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLV 1011 (1030)
T ss_pred HHh----ccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHH
Confidence 641 111 111111237788887766554333678999999999998844433233334446777888888877778
Q ss_pred HHHHHHHHHH
Q 000145 233 QSNAASLLAR 242 (2054)
Q Consensus 233 q~~A~~aL~n 242 (2054)
|+.|+++=++
T Consensus 1012 R~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1012 RKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHhhh
Confidence 8888665433
No 252
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=63.59 E-value=6.2 Score=42.59 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=34.3
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccC------CCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGN------GPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~ 2050 (2054)
+.|+|+|.++.||+- ..|..+.||++.++. ...++|+|+.+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~ 64 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK 64 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC
Confidence 679999999999975 357899999999973 46789999864
No 253
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.07 E-value=1.8e+02 Score=40.39 Aligned_cols=213 Identities=14% Similarity=0.115 Sum_probs=127.2
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G 558 (2054)
.+..+.++-..+|-+++..|+.+... .+....+...+.+...+..|++.++-+--+|..++..|+.-- ...
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--------~e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--------PED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--------chh
Confidence 34444555667899999999999873 355556667788888999999999888888888777776521 233
Q ss_pred ChHHHHH-hhcc---CChhHHHHHHHHHHHHHHh-------hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000145 559 AVPAFLW-LLKS---GGPKGQDASAMALTKLIRA-------ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2054)
Q Consensus 559 aI~aLV~-LLkS---~~~evq~~AA~AL~nLs~~-------~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-- 625 (2054)
.+|.|.+ .... ..++.+-....++.++... -....+...+...++.+..-+..+...+|.++.....
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 4555554 2221 1133344444555554433 2234556667777766555677777888877654321
Q ss_pred hHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhC---CCHHHHHHHhcc-CCHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATD---EIVNPCMRLLTS-NTQMVATQSA 700 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~---g~V~~Lv~LL~d-gs~~vr~~AA 700 (2054)
.+.+ ......++.+.+. ++.-+|..|+..+..+-.+-....-.+.+. +....+..+.+. .++.++..|.
T Consensus 883 sd~~------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaq 956 (982)
T KOG4653|consen 883 SDFF------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQ 956 (982)
T ss_pred hHHH------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 1111 1235556666655 478899999999999876433332222221 233333444443 3445666676
Q ss_pred HHHHHh
Q 000145 701 RALGAL 706 (2054)
Q Consensus 701 ~AL~nL 706 (2054)
.++-.+
T Consensus 957 l~leei 962 (982)
T KOG4653|consen 957 LCLEEI 962 (982)
T ss_pred HHHHHH
Confidence 666554
No 254
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=63.07 E-value=7 Score=41.17 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred CceEEEEEcCCcchh---hcCCCccceEeecc--CCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ---TMGTTNAFCRLTIG--NGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2050 (2054)
|.|+|+|.+++||+. +.|..+.||++.++ +...++|+|+.+
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~ 59 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK 59 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC
Confidence 569999999999975 36788999999984 456778988853
No 255
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.03 E-value=19 Score=38.63 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHhhhcCcchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhHHHHHHHHHhc
Q 000145 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877 (2054)
Q Consensus 1802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1877 (2054)
+.....|.|+.+|+.......--||--=+.-||-|--.-|+-+...||-..|-+|+.++|+|+.-||=.-+--|.+
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3677899999999654433333344344788898887777777788999999999999999999998765544443
No 256
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=62.80 E-value=6.3 Score=42.46 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=33.2
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
|.|+|+|.++.||+- .-|..+.||+++++++ ..++|+|+..
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~ 60 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC
Confidence 789999999999974 4578899999999743 3568988753
No 257
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=61.40 E-value=6.9 Score=42.25 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~ 2049 (2054)
.|.|+|+|.++.||+- .-|..+.||+++++.+ ..++|+|+.
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~ 60 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 60 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee
Confidence 4889999999999974 3467899999999632 356788875
No 258
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=60.44 E-value=7.6 Score=43.63 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCcchhh--cCCCccceEeeccCC----CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
.|.|+|+|.+|.||+-. .|.++.||++.+..+ .-++|+|+.+
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~ 73 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK 73 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC
Confidence 38899999999999743 578899999998532 4567888753
No 259
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.08 E-value=5.3e+02 Score=34.70 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=107.6
Q ss_pred HHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHH
Q 000145 539 VLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAH 611 (2054)
Q Consensus 539 aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~ 611 (2054)
.+.+.-.++++..+.+ .|.+..++.-+.+.+..+|+.++..|..++.... .+.+..|.+-+-+..+.|+.+
T Consensus 74 f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~e 151 (885)
T COG5218 74 FFEYDMPDDPEGEELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRRE 151 (885)
T ss_pred HHHhcCCCChhhhHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3333333334433333 4566777777788999999999999998886632 344555666667888889998
Q ss_pred HHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc
Q 000145 612 VIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690 (2054)
Q Consensus 612 a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d 690 (2054)
+..||..+-.....++.. ....|+.+++. ++.++|..| |.|+.. +....|.++.-.++
T Consensus 152 Av~~L~~~Qe~~~neen~--------~~n~l~~~vqnDPS~EVRr~a---llni~v----------dnsT~p~IlERarD 210 (885)
T COG5218 152 AVKVLCYYQEMELNEENR--------IVNLLKDIVQNDPSDEVRRLA---LLNISV----------DNSTYPCILERARD 210 (885)
T ss_pred HHHHHHHHHhccCChHHH--------HHHHHHHHHhcCcHHHHHHHH---HHHeee----------CCCcchhHHHHhhh
Confidence 888888775444333321 34466666665 478888754 566654 23445666666665
Q ss_pred CCHHHH-HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 691 NTQMVA-TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 691 gs~~vr-~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
-+-..| .--+++|-++..-... ... . -|..+-.-|.+.+..++..+..+++.=
T Consensus 211 v~~anRr~vY~r~Lp~iGd~~~l--si~-----k-ri~l~ewgl~dRe~sv~~a~~d~ia~~ 264 (885)
T COG5218 211 VSGANRRMVYERCLPRIGDLKSL--SID-----K-RILLMEWGLLDREFSVKGALVDAIASA 264 (885)
T ss_pred hhHHHHHHHHHHHhhhhcchhhc--ccc-----c-eehhhhhcchhhhhhHHHHHHHHHHHH
Confidence 444333 3345666666431011 111 1 112222335566777888888777643
No 260
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=59.61 E-value=8.4 Score=42.13 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=33.5
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeeccCCC-----Ccccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP-----PRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~ 2050 (2054)
|.|+|+|.++.||+.. -|.++.|.|+++..+. -++|+|+.+
T Consensus 15 ~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~ 62 (138)
T cd08408 15 GRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG 62 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC
Confidence 8999999999999863 3678999999997653 358998754
No 261
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=59.49 E-value=6.9 Score=41.92 Aligned_cols=39 Identities=21% Similarity=0.543 Sum_probs=32.6
Q ss_pred CceEEEEEcCCcchhh-cCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|.|+|..+.++|-. +|..+.||++++|+. -.+|||+.
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~-~~kT~v~~ 41 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHA-VYETPTAY 41 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCE-EEEeEEcc
Confidence 8999999999999643 599999999999884 44688864
No 262
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=58.77 E-value=6.7 Score=37.63 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=34.4
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCC--cccceeee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPP--RQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~ 2050 (2054)
|+|+|.++.||+- ..|..+.||++.++..+- ..|+++.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~ 43 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN 43 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec
Confidence 7899999999987 677899999999999988 88888764
No 263
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=57.40 E-value=9.4 Score=42.32 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCceEEEEEcCCcchh---hcCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+- +-|.++.|+|+.+..+. -|+|||+..
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk 76 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK 76 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC
Confidence 5999999999999974 34678999999996554 679999853
No 264
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.39 E-value=8.4e+02 Score=35.53 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=135.1
Q ss_pred hccCChhHHHHHHHHHHHHHHhhc-----hh----hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 567 LKSGGPKGQDASAMALTKLIRAAD-----SA----TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 567 LkS~~~evq~~AA~AL~nLs~~~e-----~~----~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
.++.++.+|..+=..|..++..+. .. +...|.+-+++-+...+.....||..+....+ .+...-. ..
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i---~k 738 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI---PK 738 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH---HH
Confidence 345578899999999999887622 11 12333333444444556666777777765433 2221111 11
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhh------CCCHHHHHHHhccC--CHHHHHHH--HHHHHHhh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLAT------DEIVNPCMRLLTSN--TQMVATQS--ARALGALS 707 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~------~g~V~~Lv~LL~dg--s~~vr~~A--A~AL~nLs 707 (2054)
.|+-++-.++..|...|+++..+|..++. .....+ ...+..++..+..| .+..+..+ .-++..+.
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 24444444577799999999999999983 111111 22566666666554 23222222 44455554
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa 786 (2054)
.... +.-....-.+.+..+...|.+++.+++..|++.+.-+.. .|+..-.--.+..++.+..+.++..-.+|.+.-
T Consensus 814 ~e~~---~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 814 QEFK---NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHh---ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3100 111111223355556667888999999999999999875 677655555556888899999998999999999
Q ss_pred HHHHHhhhcCC
Q 000145 787 RALHQLLKHFP 797 (2054)
Q Consensus 787 ~AL~nL~~~~~ 797 (2054)
..+-.|+....
T Consensus 891 ~LlekLirkfg 901 (1176)
T KOG1248|consen 891 LLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 265
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=57.25 E-value=3.7e+02 Score=35.29 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhh
Q 000145 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLL 567 (2054)
Q Consensus 490 Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LL 567 (2054)
.++.|..-|..+.......-|.-.-...+..+++.|.+ .+...+..|.++|..++.+... +++- ..-+|..+++..
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHHH
Confidence 44455554444443222222221112234456667766 5888999999999999774332 1111 123567777777
Q ss_pred ccCChhHHHHHHHHHHHHH-HhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh
Q 000145 568 KSGGPKGQDASAMALTKLI-RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646 (2054)
Q Consensus 568 kS~~~evq~~AA~AL~nLs-~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL 646 (2054)
++..+++-..|...+.... .+.-..-|.-+..++..+++.....+...+..+....+..+... .-....+.+++-.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~---ll~diaP~~iqay 457 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN---LLPDIAPCVIQAY 457 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH---hhhhhhhHHHHHh
Confidence 7888877777776655443 33222334444555555555555555556665554333333221 1245678888888
Q ss_pred ccCCHHHHHHHHHHHHHHhh
Q 000145 647 NSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 647 ks~s~evre~Aa~ALanLas 666 (2054)
.+.+..+|..|+-+|..+..
T Consensus 458 ~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred cCchHHhhhhHHHhHHHHHH
Confidence 88899999999999888865
No 266
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=56.37 E-value=8.2 Score=41.02 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=34.1
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|.|+|.++.||+.. .|.+..||++.+|+-+..+|+++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~ 42 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTIS 42 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEEC
Confidence 7899999999999874 578899999999876777888764
No 267
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=55.27 E-value=2.7e+02 Score=33.63 Aligned_cols=135 Identities=24% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCC--CHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCcccchhHHHHh
Q 000145 649 SNEENQEYAASVLADLFSMRQDICGSLATDE--IVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIA 722 (2054)
Q Consensus 649 ~s~evre~Aa~ALanLas~~~e~r~~Iv~~g--~V~~Lv~LL~dg----s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~ 722 (2054)
..+..+..+.++++|+.. ++..+..+.+.. .+...+..+... +..++..++..+.|++..... .....-..
T Consensus 122 ~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~--~~~~~~~~ 198 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK--NRSDEEWQ 198 (268)
T ss_dssp SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH--CTS-CCHH
T ss_pred CcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh--cCCChHHH
Confidence 367889999999999998 566666665553 344444444444 678999999999999761111 00000011
Q ss_pred cCChhhHHhhh-hc-CCHHHHHHHHHHHHHhhCChHHHHHHHh-cCcHHHHHHHH-cCCCHHHHHHHH
Q 000145 723 EGDVKPLIKLA-KT-SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVL-AEGTSEGKKNAS 786 (2054)
Q Consensus 723 ~gaV~~Lv~LL-~s-~d~~Vre~Al~AL~NLa~~~e~r~~Iv~-~g~I~~LV~LL-~s~~~evr~~Aa 786 (2054)
...+..+++.+ .. .++++.-.++.||++|...+.......+ .+.-..+...- ....+++++-+.
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 12344455533 22 6899999999999999986655555444 23333333332 334566665443
No 268
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=55.00 E-value=9.6 Score=40.43 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=32.7
Q ss_pred ceEEEEEcCCcch--hhcCCCccceEeeccCCCCcccceee
Q 000145 2011 CLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
+|.|+|.+|.||+ ...|..+.||++.+|+-+..+|+|+.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~ 41 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW 41 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc
Confidence 5899999999997 45677899999999876667899875
No 269
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=54.79 E-value=12 Score=39.87 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=32.8
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|+|-++.||+. ..|.++.||++.++++...+|+|+.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~ 41 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK 41 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc
Confidence 7899999999974 3677899999999878889999885
No 270
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=54.14 E-value=10 Score=39.63 Aligned_cols=40 Identities=33% Similarity=0.558 Sum_probs=32.2
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|.|+|.++.||+. ..|..+.||++.+++.. .+|+++.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~-~~T~~~~~ 42 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR-LQTHTIYK 42 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe-eecceecC
Confidence 889999999999974 45677999999998643 57887753
No 271
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=53.96 E-value=9.2 Score=39.91 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=31.4
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
++|+|.++.||+.. -|.++.||++.+|+ ..++|+|+.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~ 40 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCS 40 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEeccccc
Confidence 79999999999754 58889999999975 568898875
No 272
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=53.94 E-value=11 Score=41.19 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=34.3
Q ss_pred hhcCC--CceEEEEEcCCcchhh--cCCCccceEeeccCCC----Ccccceee
Q 000145 2005 LHCLP--GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2005 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
|+..| +.|+|+|.++.||... -|.++.|+|+.+-.++ -++|+|+.
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k 60 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR 60 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc
Confidence 44544 6899999999999753 4678999999996554 34788874
No 273
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.78 E-value=2.8e+02 Score=39.07 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=114.9
Q ss_pred CchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhc
Q 000145 34 PESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL-RSGTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 34 ~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LL-ks~s~evr~~AA~vL~~Ls 112 (2054)
+......+...++.-- .++...+|-+|+..+.....+.. ........|-+-.++... ++.+..+...++..|..++
T Consensus 247 ~~di~~ki~~~l~t~~-~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia 323 (815)
T KOG1820|consen 247 RVDILSKITKNLETEM-LSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIA 323 (815)
T ss_pred hhhhhhhcChHHHHhh-hccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 3444555555444332 34667889999999988887764 122211122233333322 3346778888999998887
Q ss_pred cCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHH
Q 000145 113 KDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQG 192 (2054)
Q Consensus 113 ~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e 192 (2054)
..-..-..=...+.++.++.-+...-..++.....++-..+.... -....+.+..++..++ +.+..
T Consensus 324 ~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----------l~~~~~~I~e~lk~kn---p~~k~ 389 (815)
T KOG1820|consen 324 KKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-----------LSKMSEAILEALKGKN---PQIKG 389 (815)
T ss_pred HhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHhcCCC---hhhHH
Confidence 542222111223778999999988777788887777777664211 1125677788888776 33454
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 193 FVTGALRNLCGDKDG-YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 193 ~Al~aL~nL~~~~e~-r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
.+...+........+ ....-.-.+.++.++....+.+.++|..+..++..+..
T Consensus 390 ~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 390 ECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 444333333222221 00001112356777777778889999999998887763
No 274
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=52.64 E-value=13 Score=39.33 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=33.3
Q ss_pred ceEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceee
Q 000145 2011 CLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
+|.|+|..+.||+.. .|..+.||++++|+.-..+|+|+.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~ 41 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDR 41 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCccccccccc
Confidence 589999999999964 588999999999886678888873
No 275
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=51.93 E-value=12 Score=40.54 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCC----Ccccceee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
.+.|+|+|.++.||+. ..|..+.||++.+..+. .++|+|+.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k 60 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK 60 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc
Confidence 3689999999999965 46788999999996542 46888885
No 276
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=51.79 E-value=12 Score=39.99 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
+.|+|.++.||+- ..|..+.||++.+|+ .-++|||+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~ 40 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEK 40 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecC
Confidence 4799999999963 457889999999985 5678998863
No 277
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=50.69 E-value=12 Score=39.01 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=31.9
Q ss_pred CceEEEEEcCCcchhh--c----CCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--M----GTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|.|+|+++.||+.. + |+.+.||++++|+ .-.+|+|+..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~ 46 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRH 46 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecC
Confidence 7899999999999853 2 3479999999975 4567888764
No 278
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=50.60 E-value=14 Score=39.66 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=29.6
Q ss_pred eEEEEEcCCcchhhcCCCccceEeeccC----CCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
|.|+|+.+.||| |..+-||++.++. ...-+||++..
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~ 40 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRD 40 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecC
Confidence 689999999998 4589999998854 35689998863
No 279
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=50.54 E-value=14 Score=39.50 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
-+|.|+|+|.++.||+. .-|..+.||++.+++. ...+|+|+.+
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~ 59 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC
Confidence 46999999999999986 4577899999999853 4567888753
No 280
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=50.54 E-value=15 Score=39.04 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=33.3
Q ss_pred ceEEEEEcCCcchhh-c--CCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQT-M--GTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
+|+|+|-.+.||+.. + |..+.||++.+|+....+|+|+..
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k 43 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK 43 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC
Confidence 478999999999875 3 567999999998877788998743
No 281
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=50.38 E-value=11 Score=40.29 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=32.4
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
+.|+|+|.++.||+.. .|.++.||++.+|+. ...|+|+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~-~~kT~v~~ 43 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE-SVRSPVQK 43 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE-EEEeCccC
Confidence 4689999999999863 688999999999865 56788874
No 282
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.12 E-value=8.8e+02 Score=33.58 Aligned_cols=200 Identities=15% Similarity=0.052 Sum_probs=120.5
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC-ChhHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRA 552 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~-sd~~r~ 552 (2054)
+.+..+++-..+++..+|...+..|..+.....+. ...+-.+....+..-+.+..+.+|.+|..+|+.+-.+ .++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 44556667777888899999999999998743332 2223334556666677888999999999999999632 222
Q ss_pred HHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 553 CVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
+..++..+..+++ ++++++|+.+. .|++. +..+.|.+++-.++-+.-++..+.. +..+..+..
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~v--dnsTlp~IveRarDV~~anRrlvY~------r~lpkid~r-- 224 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISV--DNSTLPCIVERARDVSGANRRLVYE------RCLPKIDLR-- 224 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---Hhhcc--CcccchhHHHHhhhhhHHHHHHHHH------Hhhhhhhhh--
Confidence 2445666777775 46788987764 45543 3456777777776655444432211 111111110
Q ss_pred hhhcccchHHHHHHhccC----CHHHHHHHHHHHHHHhhcChhhhhhh-hhCCCHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 000145 632 GSAANKGLRSLVQVLNSS----NEENQEYAASVLADLFSMRQDICGSL-ATDEIVNPCMRLLTS-NTQMVATQSARALGA 705 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~----s~evre~Aa~ALanLas~~~e~r~~I-v~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~n 705 (2054)
.-.+..-+.+++-+ +..++..+..+++.= .+ ...|-+..+++-|.- .+..+...+..||..
T Consensus 225 ----~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~---------Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 225 ----SLSIDKRVLLLEWGLNDREFSVKGALVDAILSG---------WLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred ----hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---------HhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 11233444444433 566666666665541 00 124566666766654 455888888888877
Q ss_pred h
Q 000145 706 L 706 (2054)
Q Consensus 706 L 706 (2054)
.
T Consensus 292 ~ 292 (892)
T KOG2025|consen 292 G 292 (892)
T ss_pred H
Confidence 4
No 283
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=50.05 E-value=13 Score=40.49 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=32.3
Q ss_pred CceEEEEEcCCcchhh-cCCCccceEeeccCCC----Ccccceee
Q 000145 2010 GCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
+.|+|+|.++.||... -|.+|.|+|+++..+. .|+|||+.
T Consensus 15 ~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~ 59 (137)
T cd08409 15 NRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD 59 (137)
T ss_pred CeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe
Confidence 6799999999999632 6779999999987653 45788874
No 284
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=49.77 E-value=14 Score=39.25 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=31.1
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCC--CCcccceee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNG--PPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~ 2049 (2054)
|+|+|.++.||+.. -|..+.||++.++++ ...+|+++.
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~ 44 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY 44 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec
Confidence 89999999999854 466789999999876 346899875
No 285
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=49.67 E-value=6.4e+02 Score=35.27 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=99.1
Q ss_pred HHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhC-ChHHHHhhhc
Q 000145 148 ALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAG-GVDIIVGLLS 226 (2054)
Q Consensus 148 AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaG-GI~~LV~LL~ 226 (2054)
+|+++... .+..++.+++.|++..+.+.+..-.. ..+...+++.+.|++...+.+...+...- -...+-.++.
T Consensus 494 ~l~~~t~~----~~~~C~~~l~~~g~~~~~~~l~~f~~--~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~ 567 (699)
T KOG3665|consen 494 ALWNITDE----NPETCKEFLDNGGMKLLFKCLESFDN--EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLN 567 (699)
T ss_pred HHHhhhcC----CHHHHHHHHhcccHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 56677752 57789999999999999999986642 35888999999999887643211111100 0122222333
Q ss_pred cCCH-HHHHHHHHHHHHHHhhcCCCc-----------------------chhcccchHHH-HHHHhccCCChhHHHHHHH
Q 000145 227 SDNA-AAQSNAASLLARLMLAFGDSI-----------------------PTVIDSGAVKA-LVQLVGQNNDISVRASAAD 281 (2054)
Q Consensus 227 s~s~-evq~~A~~aL~nLs~~~~~~r-----------------------~~i~~sGaL~~-LL~LL~s~~d~~Vr~~Aa~ 281 (2054)
.-+. +....++.+|..+....++.. .......-... +..++..+.....+..|.+
T Consensus 568 ~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ 647 (699)
T KOG3665|consen 568 KWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALW 647 (699)
T ss_pred hcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHH
Confidence 3333 666667777766663221100 00111122233 5556655556678889999
Q ss_pred HHHHHhhccHHHHHHHHhcCCHHHHHHhh
Q 000145 282 ALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2054)
Q Consensus 282 aL~nLs~~s~e~Rk~I~eaggL~~LIeLL 310 (2054)
++.++...+++.++.+.+.++++.+.+.-
T Consensus 648 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 648 TIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 99999998888888888888888776643
No 286
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.33 E-value=2.1e+02 Score=38.72 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHH
Q 000145 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMR 686 (2054)
Q Consensus 609 ~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~--g~V~~Lv~ 686 (2054)
...+...|+.+..+.+..+........+..+..++..++ .++.-+..++++|.|+.. ++..+..+... -.+.++..
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~~~ 638 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPVIE 638 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhhhh
Confidence 334455555554333322222221122335666666665 567788899999999998 46666555433 22222222
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhh---hhcCCHHH--HHHHHHHHHHhhCChHHHHHH
Q 000145 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL---AKTSSIDA--AETAVAALANLLSDPDIAAEV 761 (2054)
Q Consensus 687 LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~L---L~s~d~~V--re~Al~AL~NLa~~~e~r~~I 761 (2054)
.-...+..++..-+....|.+...-+ .+- +.+..+.|..+ +....++. .-..+.||++|.+.+....++
T Consensus 639 ~~s~~~knl~ia~atlaln~sv~l~~--~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~ 712 (745)
T KOG0301|consen 639 ASSLSNKNLQIALATLALNYSVLLIQ--DNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL 712 (745)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHh--ccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH
Confidence 22223345555444334444431111 000 12233333322 22222233 335888999999887777777
Q ss_pred HhcCcHHHHHHHHcCC
Q 000145 762 LLEDVVSALTRVLAEG 777 (2054)
Q Consensus 762 v~~g~I~~LV~LL~s~ 777 (2054)
.+.-.+.-+..-+++.
T Consensus 713 A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHhcCHHHHHHHHHHh
Confidence 6666677777665543
No 287
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=48.99 E-value=11 Score=40.21 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=32.6
Q ss_pred ceEEEEEcCCcchhhcCCCccceEeeccCCCCcccceee
Q 000145 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
.|+|+|..+.||+- .|.++.||++.+|+.+-.+|+|..
T Consensus 5 ~L~V~Vi~A~~L~~-~~~~DPYv~v~l~~~~~~kT~v~~ 42 (126)
T cd08400 5 SLQLNVLEAHKLPV-KHVPHPYCVISLNEVKVARTKVRE 42 (126)
T ss_pred EEEEEEEEeeCCCC-CCCCCeeEEEEECCEeEEEeecCC
Confidence 59999999999986 688999999999886666888754
No 288
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=48.67 E-value=5.8e+02 Score=32.05 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=129.5
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------------hhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------------SATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La 620 (2054)
+.++|....|+..+...+-+.+..+.....++-...- .+.+..|++- . ...+..+. ..|++.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~-~~~~~iaL-~cg~ml 149 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---Y-ENTPEIAL-TCGNML 149 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---h-ccchHHHH-HHHHHH
Confidence 4468888889988888888888888888777765421 1223333332 1 11222233 335555
Q ss_pred hhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC----HHHHHHHhccCCHHHH
Q 000145 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI----VNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 621 ~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~----V~~Lv~LL~dgs~~vr 696 (2054)
.....-+...+.+....-....-.+++.++-++...|...+..+...+.....++..... .+.--.++++++--++
T Consensus 150 rEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 150 RECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 444444455556666666777777888887788888888888886645444444444332 3346678899999999
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP 755 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~ 755 (2054)
..+...|+.+....+.+......+......+.+..+|++.+..++-+|-.+..-...+|
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999987632221122223444467788899999999999999998888776654
No 289
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.58 E-value=1.4e+02 Score=35.41 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcH
Q 000145 99 LAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVV 173 (2054)
Q Consensus 99 evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-----ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~V 173 (2054)
.-..++..+|.-+++.++.|..+.++..---+..+|.. .-+..|..+++.+..|..++ ++...+.+....+|
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---sq~vi~fLltTeiv 191 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---SQYVIKFLLTTEIV 191 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---CHHHHHHHHhhhHH
Confidence 34556777788888888888888876543333445433 24568889999999999854 44456677788899
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhc
Q 000145 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS 226 (2054)
Q Consensus 174 p~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~ 226 (2054)
|.+++++..++. .-+.-++.++..+-+++. |+..+++-..
T Consensus 192 PLcLrIme~gSE---lSktvaifI~qkil~dDv----------GLqYiCqT~e 231 (315)
T COG5209 192 PLCLRIMELGSE---LSKTVAIFIFQKILGDDV----------GLQYICQTFE 231 (315)
T ss_pred HHHHHHHHhhhH---HHHHHHHHHHHHHhccch----------hHHHHHHHHH
Confidence 999999987762 123345666666666554 5666665443
No 290
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.28 E-value=4.8e+02 Score=36.92 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=114.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHh-hhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh
Q 000145 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS-LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~-LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a 515 (2054)
+-.-+.+.+...+..++..+........ ........+-+-.++. .+.+.|..+...++..|..++...... ..-...
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAK 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHH
Confidence 3334455666677777766665554422 1111111122222333 334557778888888888887643322 222345
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----- 590 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----- 590 (2054)
+..+.++.-++.....+++....++-....... -....+.+...+++++|..+..+...+.......+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 788999999988888888877777665543111 13345667788999999999888877777665422
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 591 ----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
...+|.+++...+.+.+|+..+.++++.+...
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 34678888888999999999999999877543
No 291
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=46.27 E-value=3e+02 Score=35.95 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=95.6
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC----ChhHHHHHHHHHHHHhcCC
Q 000145 130 LLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ----DNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 130 LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~----d~~V~e~Al~aL~nL~~~~ 205 (2054)
+..+++..+.+-|-+|+-....++.+++ -+..+|+.++++-|.+.+-+++.+++.. +.....-++..|.-.|+.+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~D-i~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDD-IVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccc-hhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 4556666555667777777788887654 3567888999999999999999876432 2345556677888888876
Q ss_pred Cc-hhHHHHhhCChHHHHhhhccC-CHH------HHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc
Q 000145 206 DG-YWRATLEAGGVDIIVGLLSSD-NAA------AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 206 e~-r~~aI~eaGGI~~LV~LL~s~-s~e------vq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
+- ....|++ .||.+...+... +++ +.+.+..+|..++ .++.-...++..|+++.+.++..
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHh
Confidence 52 1233333 689999888764 222 6677788888877 44666677889999999998775
No 292
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=45.80 E-value=1.2e+02 Score=34.38 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=75.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc--CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCCh
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG--GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDH 161 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~--GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~ 161 (2054)
-+..+..+|++++++.|..++.++..++...+ .+.+... ..+..++++|.. +++.+.+.|+.+|..|......+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 46678889999999999999999988765432 2333333 457889999988 5778899999999888764322222
Q ss_pred hHHHHHHH--cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 162 VGMKIFVT--EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 162 ~~re~Iv~--aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
-.|+.... .+.++.+++++.. ....+.++.+|..+-..++
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCC
Confidence 23333221 1345555555543 1245667777777766543
No 293
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=44.24 E-value=20 Score=38.66 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=32.4
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCC-----Ccccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP-----PRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~ 2049 (2054)
|.|+|+|+++.||+- .-|.++.|.|+.+=.++ -++|+|+.
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~ 60 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE 60 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC
Confidence 589999999999975 34778999999986655 47888873
No 294
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.65 E-value=6.5e+02 Score=30.16 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=76.8
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhchhhHHH----HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH
Q 000145 566 LLKSGGPKGQDASAMALTKLIRAADSATINQ----LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2054)
Q Consensus 566 LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~----Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~ 641 (2054)
+-+..+++.+.....+|..++.+.+ ...+. +..+...++...+..+.+.+..+... .+. .-+.++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~---~~r------~f~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA---NDR------HFPFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh---Cch------HHHHHHH
Confidence 5566788888888899998887763 33333 44444444444322223333322211 110 0134555
Q ss_pred HHHH--h------c--cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhC
Q 000145 642 LVQV--L------N--SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 642 LV~L--L------k--s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~ 708 (2054)
++.. + + +...+.....+..+..+|..+++ -....++.+..++ ++.++..+..+..+|..++.
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 5444 1 1 11345555666788888886665 2245678888899 78888889889999999885
No 295
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=43.60 E-value=23 Score=37.85 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=31.1
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCc-ccceee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPR-QTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~ 2049 (2054)
|.|+|.++.||+. ..|.++.||++.+|+..++ +|+++.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~ 42 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP 42 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE
Confidence 6899999999974 5688999999999987663 577664
No 296
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=42.75 E-value=1.2e+02 Score=41.04 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=116.9
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
.+.+|.+++|.+..+..++...+.-+-..... ...........+.+..-+.+.|+.+|+.++..+..|+..-.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~------Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~- 401 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH------LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS- 401 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh------cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-
Confidence 35789999999999888886654433332222 22223455578889999999999999999999999876311
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
........+..+.++-.|.+..+|.+..-||+.++..... ..| +.-.+.+...-+++.-..-|..+..+|+.
T Consensus 402 --~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~--~~R----~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 402 --KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA--SVR----KRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred --hhhhcHHHHHHHHhhCccccCcccccceeeecccccccch--hhh----ccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 1133344555666655567778999999899988752221 112 22233334445555545556666666654
Q ss_pred hhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 751 La~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
.....+. .=++...+|.++.+.-+.+..+|..|-.++.....
T Consensus 474 t~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 474 TQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 4332221 11234567777777777788888877777665443
No 297
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.51 E-value=2.6e+02 Score=32.44 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=71.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC-------------------CHHHHHHHhc-cCCHHHHHHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE-------------------IVNPCMRLLT-SNTQMVATQS 699 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g-------------------~V~~Lv~LL~-dgs~~vr~~A 699 (2054)
.-+-.+++++++.+|..|+.++..|.++....-....+.+ .-..|+..++ +.+..+....
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3344567888999999999999999886433333222111 1123334444 4466778888
Q ss_pred HHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 700 A~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
..+|..|....|= ...+..+.. ..+..+..++.+.|.+++..++.+++.+..
T Consensus 123 lK~la~Lv~~tPY-~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 123 LKCLAVLVQATPY-HRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHccCCh-hhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 9999999874332 122222221 244555667778999999999999998865
No 298
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.20 E-value=5.8e+02 Score=34.36 Aligned_cols=123 Identities=17% Similarity=0.110 Sum_probs=79.2
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 84 GgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
|.+.-++.-+.+++..+|..++.+|..++..-.-....+..|.+..|.+=+-+..+.||..|..+|..+-....| +++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n--een 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN--EEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC--hHH
Confidence 566677777778888899999999988865433333445557777777666667788999999999888754332 221
Q ss_pred HHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCH
Q 000145 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA 230 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~ 230 (2054)
+ .+..|..+++.+.. ..++.. +|.|+.-++. ..|.++....+.+.
T Consensus 169 ~-------~~n~l~~~vqnDPS--~EVRr~---allni~vdns----------T~p~IlERarDv~~ 213 (885)
T COG5218 169 R-------IVNLLKDIVQNDPS--DEVRRL---ALLNISVDNS----------TYPCILERARDVSG 213 (885)
T ss_pred H-------HHHHHHHHHhcCcH--HHHHHH---HHHHeeeCCC----------cchhHHHHhhhhhH
Confidence 1 34466667765432 235543 5677776654 34556665555543
No 299
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=41.67 E-value=23 Score=37.83 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=31.1
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeec--cCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTI--GNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~ 2050 (2054)
+.|+|+|.++.||.-. -|..+.|+|+-+ ++..-++|||+..
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~ 60 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG 60 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC
Confidence 6799999999999743 466677988766 3445778998753
No 300
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=41.59 E-value=20 Score=37.88 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=30.4
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|+|.++.||+. ..|..+.||++.+|+ ...+|+|+.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~ 40 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVK 40 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeec
Confidence 7999999999964 346779999999986 457899885
No 301
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.53 E-value=93 Score=42.15 Aligned_cols=191 Identities=10% Similarity=0.072 Sum_probs=120.3
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP 755 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~ 755 (2054)
.+.++++.|+++++..+..+|..-..-+-+... .....+.+..+.+.+..-+.+.++.+|+..+.++..|+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~------~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~-- 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID------HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP-- 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh------hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh--
Confidence 567899999999999999999877766666654 233356677799999999999999999999999988874
Q ss_pred HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHH
Q 000145 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEV 835 (2054)
Q Consensus 756 e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~A 835 (2054)
..-........+..+-++-.+.+..+|.+.+-||+.++.... ... ...-.+.+....+++.-.. .+..++.+
T Consensus 399 kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~---R~~vL~~aftralkdpf~p--aR~a~v~~ 470 (690)
T KOG1243|consen 399 KLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASV---RKRVLASAFTRALKDPFVP--ARKAGVLA 470 (690)
T ss_pred hhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccc---hhh---hccccchhhhhhhcCCCCC--chhhhhHH
Confidence 111112222344555555556788999999999999887521 111 1111233344444433222 25555444
Q ss_pred HHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 836 VALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 836 La~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
+...... .....+ ...-++.+..+.-++++.++..|-..+..+...-
T Consensus 471 l~at~~~-~~~~~v---------a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 471 LAATQEY-FDQSEV---------ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred Hhhcccc-cchhhh---------hhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 4332211 000001 1123455666666888889999988888777654
No 302
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=40.88 E-value=22 Score=38.51 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.9
Q ss_pred eEEEEEcCCcc--hhhcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNL--KQTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|+|.+|.|| +-..|.++.||++++|+. .++|+|+.+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~v~~~ 42 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLNQ-SQETEVIKE 42 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECCe-eeEeeeEcC
Confidence 78999999999 456788999999999864 678998853
No 303
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=40.68 E-value=24 Score=39.48 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.1
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCC
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG 2040 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2040 (2054)
|.|+|+|.+|.||+- ..|..+.||++.+++.
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~ 60 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPA 60 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEccc
Confidence 459999999999964 5688899999999753
No 304
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=40.55 E-value=9.5e+02 Score=31.24 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc---c-------CCHHHHHHHHHHHHHHhcC
Q 000145 87 PLFISILRSGT-PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK---S-------ESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 87 p~LV~LLks~s-~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~---s-------ed~eVr~aAa~AL~nLS~~ 155 (2054)
..+.++|..+. +..+..+..++.-|+.+...-+.+....-+..|+.+-. . .|..+...+.++|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34667777765 45566677777777776554443333333344443321 1 2568899999999999983
Q ss_pred CCCCChhHHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHHHHHHHHhcC-CCchhHHHHhhCChHHHHhhhccC----
Q 000145 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVTGALRNLCGD-KDGYWRATLEAGGVDIIVGLLSSD---- 228 (2054)
Q Consensus 156 ~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~--~d~~V~e~Al~aL~nL~~~-~e~r~~aI~eaGGI~~LV~LL~s~---- 228 (2054)
+...+..+.+......+.+.+..... -...+.-.=++.|.-+..- .+.|.+.+.+.+|++.+..++.+.
T Consensus 128 ----Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 128 ----SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred ----cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 66778888888888888776642210 0001121223333322221 256777889999999999999763
Q ss_pred --------CHHHHHHHHHHHHHHH
Q 000145 229 --------NAAAQSNAASLLARLM 244 (2054)
Q Consensus 229 --------s~evq~~A~~aL~nLs 244 (2054)
+++-...|+.+|-.+.
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFF 227 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHh
Confidence 1244455666665554
No 305
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=39.49 E-value=89 Score=30.89 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000145 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2054)
Q Consensus 142 r~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r 208 (2054)
.+.|+.++.++++ .+.|...+.+.++++.++++....+. ..++..+..+|.-+++..++.
T Consensus 4 lKaaLWaighIgs-----s~~G~~lL~~~~iv~~iv~~a~~s~v--~siRGT~fy~Lglis~T~~G~ 63 (73)
T PF14668_consen 4 LKAALWAIGHIGS-----SPLGIQLLDESDIVEDIVKIAENSPV--LSIRGTCFYVLGLISSTEEGA 63 (73)
T ss_pred HHHHHHHHHhHhc-----ChHHHHHHhhcCHHHHHHHHHHhCCc--cchHHHHHHHHHHHhCCHHHH
Confidence 5788999999996 45677777788999999999876542 458999999999999887654
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=39.39 E-value=66 Score=33.07 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=62.7
Q ss_pred hhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhh
Q 000145 727 KPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNA 806 (2054)
Q Consensus 727 ~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i 806 (2054)
...+..++++.+.+|..++.-|..|..... ...+..++.+..+...+.+.++-+--+|+.+|..|+...|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p--------- 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP--------- 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh---------
Confidence 345566778888899999999999987544 2223334567777789999999999999999999998643
Q ss_pred hhhhhHHHHHHhhccC
Q 000145 807 QCRFVVLTLVDSLNAM 822 (2054)
Q Consensus 807 ~~~g~v~~LV~LL~sg 822 (2054)
...++.|++.+.+.
T Consensus 76 --~~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 76 --DEVLPILLDEYADP 89 (92)
T ss_pred --HHHHHHHHHHHhCc
Confidence 34667777777543
No 307
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=39.09 E-value=26 Score=36.44 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=31.7
Q ss_pred eEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|+|+|..+.||+. +-|..+.||++.+++....+|+|+.+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~ 41 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK 41 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC
Confidence 5789999999865 45678999999997767788998853
No 308
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=38.70 E-value=1e+02 Score=30.44 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcC
Q 000145 102 VNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2054)
Q Consensus 102 ~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG 171 (2054)
..+..++++++..+.....+-+.+.++.++++... +...+|-.|..+|.-++. ...+.+.+.+.|
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-----T~~G~~~L~~~g 70 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-----CHHHHHHHHHcC
Confidence 46788899998887777777777999999999987 788899999999999995 677777776655
No 309
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=37.69 E-value=22 Score=38.45 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred eEEEEEcCCc---ch--hhcCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNN---LK--QTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|+|.+..| |+ ...|+++.||.+++|+--- +|||++.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~-rTk~~~~ 44 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV-RTRTVED 44 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEe-EcCcccC
Confidence 7899999998 55 4568999999999998744 5998853
No 310
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=37.33 E-value=1.2e+03 Score=35.28 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=81.9
Q ss_pred chHHHHH----HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 638 GLRSLVQ----VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 638 aI~~LV~----LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
..+.+.. ++++.++.+++.+......++.... ...+..++..|+..+-+|+..-...|...|..|+...+.
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~- 506 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS- 506 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH-
Confidence 3445554 5678899999999999888887432 234556888999988888876667889999999862221
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHH-HHHcCCCHHHHHHHH
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALT-RVLAEGTSEGKKNAS 786 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV-~LL~s~~~evr~~Aa 786 (2054)
..+ .-...+..+++.+..-+..........|+.|+........-+.. -+..++ +.+.+.+++.|+..+
T Consensus 507 -~l~---~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~d-el~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 507 -ELQ---PFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQD-ELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp -HHH---HTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHH-HHHHHHHHHHT-SSHHHHHHHH
T ss_pred -HHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHhhcCCcHHHHHHhH
Confidence 111 11335566777777755555566788888886422111111111 133344 456666776665433
No 311
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.67 E-value=84 Score=32.31 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=58.3
Q ss_pred hHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000145 520 PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2054)
Q Consensus 520 ~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~ 599 (2054)
..+..|.++.+.+|..+...|+.|....+ ...+...+.+..+...++++++-+--+|..+|..|+......+++.|++
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 34455677788899999999999987554 1111123445555678888999899999999999987765567777776
Q ss_pred HhcC
Q 000145 600 LLLG 603 (2054)
Q Consensus 600 LL~~ 603 (2054)
.-.+
T Consensus 85 ~y~~ 88 (92)
T PF10363_consen 85 EYAD 88 (92)
T ss_pred HHhC
Confidence 5443
No 312
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=36.46 E-value=9.4e+02 Score=33.71 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=106.2
Q ss_pred HHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChH--HHHHhhccCC-h
Q 000145 497 LIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVP--AFLWLLKSGG-P 572 (2054)
Q Consensus 497 aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~--aLV~LLkS~~-~ 572 (2054)
+|++.+..++++...+.+.|+...+.+.++.- ....+..+.+.+.+++... +.+........+. .+-.++...+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~-~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVL-ELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 56677877788888999999999999999865 6788999999999998632 2222211111122 3333444444 4
Q ss_pred hHHHHHHHHHHHHHHhhch----hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH-HHHHhc
Q 000145 573 KGQDASAMALTKLIRAADS----ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS-LVQVLN 647 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e~----~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~-LV~LLk 647 (2054)
+.-+.++..|..+..+.+. .-.+...++ ..++...........+ -.....+ +..+++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~-----------l~e~i~~~~~~~~~~~-------~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNEL-----------LVEAISRWLTSEIRVI-------NDRSFFPRILRILR 634 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHH-----------HHHHhhccCccceeeh-------hhhhcchhHHHHhc
Confidence 8889999999988776331 011111111 1111111110000000 1112222 444454
Q ss_pred c-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 648 S-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 648 s-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
. ..+..+-.|.+++.++...+++.+..+.+.++++.+.+.-
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 4 3677889999999999998899888888888888777654
No 313
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.43 E-value=6.9e+02 Score=34.40 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=104.2
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhc--CChhH---HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh----h
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCC--HSEDI---RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA----A 589 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~--~sd~~---r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~----~ 589 (2054)
|-|.+-|+..+..+|.+|+..+.++-- +.+.. ...+. ..-..-|..+|+++-|.+|..|...+...... .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 445566788899999999999998732 11111 11111 22355677899999999999888877766543 1
Q ss_pred chhhHHHHHHH-----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 590 DSATINQLLAL-----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 590 e~~~Ip~Lv~L-----L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
-..++..++.- ..+...+|+..+.++|-.++....+....+. +++.|=..+.+.++.+|-.+...|..+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~------~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ------LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH------HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 11122222211 2234456777777777776644333223322 356666677888999999999988887
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 665 as~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
-... ...+.+---.+.++.-|..++..+.+.-+.-+.+..-
T Consensus 330 k~vr---a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 330 KAVR---AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred Hhhh---hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 5421 1112222223444444555554444444555555543
No 314
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.34 E-value=2.8e+02 Score=30.81 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=57.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS------ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s------ed~eVr~aAa~AL~nLS~ 154 (2054)
++..+.+-|+++++.++..|+.+|-.+.++ ...+..+...+.+..|++++.. .++.|+...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 577788889999999999999999877654 5567777778889999999963 478999999999877764
No 315
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=35.78 E-value=1e+03 Score=30.11 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=126.8
Q ss_pred hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhcC---CHHHHHHHHHHHHHHhcC
Q 000145 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG---SQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 471 ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s~---s~~Vre~AA~aL~nLa~~ 546 (2054)
.+.|....|++.+...+-+.+..+.....|+-+...++|...++. ..=+.++..|-.+ .+++--.+-..|.....+
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhh
Confidence 345677888888888888899999999999877555555443322 2223333333222 245544555555555443
Q ss_pred ChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHH-HHHHhcCCCcchHHHHHH
Q 000145 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQ-LLALLLGDSPSSKAHVIK 614 (2054)
Q Consensus 547 sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~-Lv~LL~~~~~~V~~~a~~ 614 (2054)
+...+.+....-........+.+.-++-.-|..+...+....+ ....+. -.+++.+++--.+.+...
T Consensus 156 -e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 156 -EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred -HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 3444555556666666666666666666556555555543321 111233 667888888888999999
Q ss_pred HHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 615 VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 615 AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
.++.+....+......+-+.....++.+..+|++++..++-.|-.++.-...
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 9999887666555555556667789999999999999999999888776655
No 316
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.68 E-value=2.8e+02 Score=33.17 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=81.2
Q ss_pred HhhhccchhHHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccC--------CcHHHHHHHHH
Q 000145 1299 DLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSN--------SSLELKRNAAE 1370 (2054)
Q Consensus 1299 ~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--------~~~~l~~~~a~ 1370 (2054)
+..+..++=|+.|..++...-+-.+++-+-++-+-+|+---.+. .=..+..+++.++. ........+++
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~---~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ 110 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQ---PLLLLLILRIPSSFSSKDEFWECLISIAASIRD 110 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHH---HHHHHHHhhcccccCCCcchHHHHHHHHHHHHH
Confidence 33444555555566666666667777777777666655431111 11222223333222 11223446778
Q ss_pred HHHHHhcCcccccCccccchhhhhhhhh-cCChhHHHHHHHHHHHhhhhhhhhhHhhhhcchhhh
Q 000145 1371 LCFIMFGNAKIIANPIASECIQPLISLM-QSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDL 1434 (2054)
Q Consensus 1371 l~~~l~~~~~i~~~~~a~~~~~pli~l~-~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~ 1434 (2054)
+|+..=+ -+..++.++..+| +...+.+|-.+.++++.|. +.+..+...+-.+|.|
T Consensus 111 ic~~~p~--------~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-~~~vvd~~s~w~vl~~ 166 (234)
T PF12530_consen 111 ICCSRPD--------HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-EAEVVDFYSAWKVLQK 166 (234)
T ss_pred HHHhChh--------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHH
Confidence 8877655 5678999999999 8999999999999999999 6778888888888887
No 317
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.56 E-value=1.5e+03 Score=32.07 Aligned_cols=559 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred hHHHHHHhccC---CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhC--CCC
Q 000145 639 LRSLVQVLNSS---NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSR--PTK 711 (2054)
Q Consensus 639 I~~LV~LLks~---s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs--~~vr~~AA~AL~nLs~--s~~ 711 (2054)
++.|-..+... ++.+|..+-++|..+.. +.|..-.+++++.+++ +.+|..|+-.+-|-.. +.+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~----------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEG----------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhcc----------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Q ss_pred cccc-hhHHHHhcCChhh-HHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 000145 712 TKTT-NKMSYIAEGDVKP-LIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787 (2054)
Q Consensus 712 ~~d~-~r~~I~~~gaV~~-Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~ 787 (2054)
+.+. .+..-.+.+.++. ++.++-+....++..--.||.-++. -|+ .=+..++.|+.-+..+|-.+-.....
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~-----kWptLl~dL~~~ls~~D~~~~~gVL~ 148 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD-----KWPTLLPDLVARLSSGDFNVINGVLV 148 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch-----hhHHHHHHHHhhccccchHHHHHHHH
Q ss_pred HHHHhhhcCCC----chhHhhhhhh-hhhHHHHHHhhc-------cCCCCchhHHHHHHHHHHHhhcccCCCccCCcccc
Q 000145 788 ALHQLLKHFPV----GDVLKGNAQC-RFVVLTLVDSLN-------AMDMNGTDVADALEVVALLARTKQGLNFTYPPWAA 855 (2054)
Q Consensus 788 AL~nL~~~~~~----~e~i~~~i~~-~g~v~~LV~LL~-------sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~ 855 (2054)
..+.+-..-.. +....+-..+ .....++.++++ .+..+.....--.+.|-.+++--.....-..+=.-
T Consensus 149 tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFF 228 (960)
T KOG1992|consen 149 TAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFF 228 (960)
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHH
Q ss_pred cccCCCchHHHHHhhh-------------cCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCcee
Q 000145 856 LAEVPSSIEPLVCCLA-------------EGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922 (2054)
Q Consensus 856 ~~~~~~~L~~Lv~ll~-------------~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev 922 (2054)
......|++.+..++. .--..+++.--++..-+...+......++.+=-.-+--|+..+=.+..-..
T Consensus 229 Ednm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~ 308 (960)
T KOG1992|consen 229 EDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDY 308 (960)
T ss_pred HhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHH
Q ss_pred ehhhhHHHH--Hhcccchh------hhHHHHhhcCCcHHHHHHHH--HHhhhccCCCC-CC---cccccCCCcccccccc
Q 000145 923 RVGGAALLI--CAAKEHKK------QSMDALDLSGYLKPLIYALV--DMMKQNSSCSS-LD---IEVRTPRGYMERTAFQ 988 (2054)
Q Consensus 923 ~~~~~~~~i--~~~k~~~~------~~~~~L~~~g~~~~~i~~Lv--~l~~~~~~~~~-~d---~~~~~~~~~~~~~~~~ 988 (2054)
+++.+.... .+.|.+.+ +.++.+.+.=+++..+-+-- ||=|...+.-. -| -.+.|+|++-+..---
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Q ss_pred ccCCCCcCC-------CCCcch------------hhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccc
Q 000145 989 EADDFDVPD-------PATILG------------GTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEF 1049 (2054)
Q Consensus 989 ~~~~~~~~~-------~~~~~~------------~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~ 1049 (2054)
....|..+. -.+..+ -..|+.|.+-+|.....-|-=+.-..=+=-+.+|...-.. |-=..
T Consensus 389 L~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~il-p~L~s 467 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQIL-PDLLS 467 (960)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhh-HHhcc
Q ss_pred -cccchhHHHHHHHHHHccCcccccchhhhccHHHHHHHhcccchhhhHHHHHHHHHh--hccCCccchhhhhccccchh
Q 000145 1050 -EDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASL--VCSGSKGIILAIANSGAVAG 1126 (2054)
Q Consensus 1050 -~~~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1126 (2054)
.-.+..-.-+.=+--.|..|.-.-.+-.|..+|+|+..|.++++.=-=+||.++=-+ ||..|+|++.+
T Consensus 468 ~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~--------- 538 (960)
T KOG1992|consen 468 PNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFG--------- 538 (960)
T ss_pred CccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccc---------
Q ss_pred hhhhhcccccCCch--hhhhhhhhhcccCC----cHHHHHhhhcccccccchh---hhhhhhhHHHhccCCCCCCCChhH
Q 000145 1127 LITLIGHIESDTPN--LVALSEEFFLVRYP----DEVVLEKLFEIEDVRVGST---ARKSIPLLVDILRPIPDRPGAPPV 1197 (2054)
Q Consensus 1127 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~l~~lf~~~~ir~~~~---a~~~i~~lv~~l~~~~~~~~~~~~ 1197 (2054)
..|+++ +.-|.+=|.-...| ++....-.+|+=.|=..++ +-..++-|-+++.-..-.|--|-.
T Consensus 539 --------~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~f 610 (960)
T KOG1992|consen 539 --------AEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQF 610 (960)
T ss_pred --------hhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchh
Q ss_pred ------HHHHHHHhhcCCCcchhHHHhcchhhHHHHhhc
Q 000145 1198 ------AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230 (2054)
Q Consensus 1198 ------a~~~l~~l~~~~~~~~~~~~e~~~~~~l~k~ls 1230 (2054)
.++++++.+..+++..+.-.|..-+=.+.-+|+
T Consensus 611 nHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 611 NHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS 649 (960)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
No 318
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.41 E-value=1e+03 Score=30.04 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCcccchhHHHHhcCC-hhhHHhhhhcC-----C--------HHHHHHHH
Q 000145 681 VNPCMRLLTSNTQMVATQSARALGALSR-PTKTKTTNKMSYIAEGD-VKPLIKLAKTS-----S--------IDAAETAV 745 (2054)
Q Consensus 681 V~~Lv~LL~dgs~~vr~~AA~AL~nLs~-s~~~~d~~r~~I~~~ga-V~~Lv~LL~s~-----d--------~~Vre~Al 745 (2054)
++.+.+.|..........+.+-|..+.. .... ..+..+..-+. .+.+.+++... + +++|...+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~--~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGA--LAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHH--HHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 5677777777777777777777777775 1111 22222222222 23355555321 1 27888766
Q ss_pred HHHHHhhC--ChHHHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHH-hhhcCCCchhHhhhhhhhhhHHHHHHhhcc
Q 000145 746 AALANLLS--DPDIAAEVLL-EDVVSALTRVLAEGTSEGKKNASRALHQ-LLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2054)
Q Consensus 746 ~AL~NLa~--~~e~r~~Iv~-~g~I~~LV~LL~s~~~evr~~Aa~AL~n-L~~~~~~~e~i~~~i~~~g~v~~LV~LL~s 821 (2054)
..+..+.. ++..+..+.. .+.+..+.+.|..+++++-.....+|.. +..+..+.......+-....+.+|+.++..
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 66655543 6777777664 4557888888999999998889998885 555554444454444456688889998864
Q ss_pred CCC--CchhHHHHHHHHHHHhh
Q 000145 822 MDM--NGTDVADALEVVALLAR 841 (2054)
Q Consensus 822 g~~--~~~~~~~AL~ALa~La~ 841 (2054)
.+. .......+-+.|-.++.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhc
Confidence 433 12345556666666664
No 319
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=34.31 E-value=36 Score=37.37 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccCCCCc----cccee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPR----QTKVI 2048 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~ 2048 (2054)
.+|.|||+|.+|.||+.. -+.+.-|+|+.+=.++-| +|+|+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~ 58 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLV 58 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccE
Confidence 579999999999999973 134466999988766544 56665
No 320
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=33.68 E-value=4.8e+02 Score=35.97 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=91.3
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.++.|..-+++.+..+++.+...+..+... -+ ...++.-++|.+..+. ++.+..++.+++.|++.+.. .
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-------~ 459 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-------R 459 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-------H
Confidence 466677777778899999999998888752 11 4455666777777764 45677899999999999873 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCC
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~ 778 (2054)
.+....-+.+.++.+..+..++.+.-..+.+..++........+...+.++|.++.+.-.+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 12222233566777777778899988888888888764333355666778888877765543
No 321
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.37 E-value=2.3e+02 Score=31.42 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=59.6
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q 000145 84 QAMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 84 GgVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~ 154 (2054)
.++..|.+-|+++++.++..|+.+|-.+.++ ......+...+.+..|++++.. .++.|+..++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999887665 4566777777899999999976 688999999999988875
No 322
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=32.89 E-value=72 Score=38.26 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcC-------ChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc
Q 000145 99 LAKVNVAATLSVLCKDEDLRLKVLLGG-------CIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2054)
Q Consensus 99 evr~~AA~vL~~Ls~~ee~r~~v~~~G-------aIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a 170 (2054)
.-|..+..+|+.||..+.|-..+...+ .+..|+++|.. +++-.|+.|...|.+|+.++ +...+..-.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~---~~~~r~iA~q~ 215 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD---EAAARAIAMQK 215 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc---HHHHHHHHHhh
Confidence 568899999999998777766665543 34566677776 69999999999999999852 34455666678
Q ss_pred CcHHHHHHhhCC
Q 000145 171 GVVPTLWDQLNP 182 (2054)
Q Consensus 171 G~Vp~Lv~LL~s 182 (2054)
+.|..|+.++..
T Consensus 216 ~~i~~Li~FiE~ 227 (257)
T PF12031_consen 216 PCISHLIAFIED 227 (257)
T ss_pred chHHHHHHHHHH
Confidence 999999999854
No 323
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=31.68 E-value=95 Score=37.29 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHhhhccchhhHHHhhCCCch-------Hhhhhh-cCCHHHHHHHHHHHHHHhcCChhHH-HHHHHcCC
Q 000145 489 QHQEYAVQLIAILTEQVDDSKWAITAAGGIPP-------LVQLLE-AGSQKAREVAAHVLWILCCHSEDIR-ACVESAGA 559 (2054)
Q Consensus 489 ~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~-------LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r-~~I~e~Ga 559 (2054)
.-|+.|+.+|++|+- .+.|...+...+.... |+++|. ..++..|+-|.-.|.+|+..++... ..-.+.++
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999998 4666666665544333 344444 3488999999999999998766654 44446889
Q ss_pred hHHHHHhhccCCh
Q 000145 560 VPAFLWLLKSGGP 572 (2054)
Q Consensus 560 I~aLV~LLkS~~~ 572 (2054)
|..|+.++.+...
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
No 324
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.31 E-value=2.7e+02 Score=30.28 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=56.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc---CCHHHHHHHHHHHHHHhc
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS---ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s---ed~eVr~aAa~AL~nLS~ 154 (2054)
++..|-+-|+++++.++..|+.+|-.+.++ ...+..+.....+..|++++.. .+++++..++..+...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567778888999999999999999887765 3455666666777889999875 488999999999988875
No 325
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.48 E-value=7.8e+02 Score=32.50 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhcC--hhhhHHHhhcchHH-HHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 407 VQERVLEAMASLYGN--IFLSQWVSHAEAKK-VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~-~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
.|..++.+||.+... ...... ... .|+..|.+.+...|..++..+..++.........-.-....+.|..+|
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 678888999988542 111111 222 588888888888888888888888765322211110012235566777
Q ss_pred cCCCh
Q 000145 484 GLSSE 488 (2054)
Q Consensus 484 ~s~d~ 488 (2054)
..+..
T Consensus 178 ~~~~~ 182 (441)
T PF12054_consen 178 ENPEP 182 (441)
T ss_pred cCCCC
Confidence 75543
No 326
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=30.44 E-value=42 Score=35.44 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=30.8
Q ss_pred ceEEEEEcCCcchh----hcCCCccceEeeccCCCC-----cccceee
Q 000145 2011 CLTVTIKRGNNLKQ----TMGTTNAFCRLTIGNGPP-----RQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~ 2049 (2054)
.|+|+|-+|.||+. ..|..+.||++.+.+.+. ..|++++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~ 50 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVK 50 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeec
Confidence 58999999999986 368899999999965443 5677654
No 327
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=30.18 E-value=45 Score=35.66 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.7
Q ss_pred ceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2011 CLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
.|+|+|.+|.||+- ..|.++.||++.+|+. ..+|+++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~v~ 41 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT-KKRTKTIP 41 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCE-eeecceec
Confidence 48999999999963 4577899999999864 56788774
No 328
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=29.19 E-value=46 Score=35.61 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=31.4
Q ss_pred ceEEEEEcCCcchh-hcCCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQ-TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.|.|+|-.++.++. ..|.++.||++.+|+-+..+|+|+.+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~ 43 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK 43 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCC
Confidence 47889988874432 36778999999999888899998753
No 329
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.17 E-value=88 Score=34.59 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=74.0
Q ss_pred chhHHHHHHHHHHhhcCCccccccccCcccchHHHHHhhcCChhHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHH
Q 000145 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQ 1606 (2054)
Q Consensus 1529 ~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~~~pl~~ 1606 (2054)
.|+....+=-+|| .+|+ .+..|+.++..-|.++++.+|-.|=.||+.+..| .+|+..+.++-.+--|++
T Consensus 18 dw~~ileicD~In--~~~~-------~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 18 DWEAIQAFCEQIN--KEPE-------GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CHHHHHHHHHHHH--cCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 4555555555554 2222 3678999999999999999999999999999998 689999999999999999
Q ss_pred Hhhc------chhhHHHHHHHHHHHHhhhhh
Q 000145 1607 LAGI------GILNLQQTAVKALEKISTSWP 1631 (2054)
Q Consensus 1607 ~~~~------~~~~~~~~~~~~~~~~~~~~~ 1631 (2054)
++.- .-...|++.+.-+...+...|
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9942 456889998888776555544
No 330
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.16 E-value=2.6e+02 Score=30.51 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=56.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc-C-CHHHHHHHHHHHHHHhc
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS-E-STDTRKAAAEALYEVSS 154 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s-e-d~eVr~aAa~AL~nLS~ 154 (2054)
++..|-+-|+++++.++..|+.+|-.+.++ ......+...+.+..|++++.+ . .+.++..++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 567777888899999999999999877665 4566777777889999999988 3 44599999999888775
No 331
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=29.10 E-value=52 Score=32.01 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=31.5
Q ss_pred ceEEEEEcCCcchhhc--CCCccceEeeccCC--CCcccceee
Q 000145 2011 CLTVTIKRGNNLKQTM--GTTNAFCRLTIGNG--PPRQTKVIF 2049 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~ 2049 (2054)
.|.|+|..|.|++..- +.++.||+++++.. ..++|+++.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~ 43 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK 43 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec
Confidence 3678999998887764 47999999999876 478888775
No 332
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.81 E-value=2.1e+02 Score=35.65 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
++......|.+++++.+....-.+..|+..+++........ ++-.+++-++.-...+-+.|+.++.-+.. ...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs------~ln 161 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFS------SLN 161 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHH------HHH
Q ss_pred HHHHhcCChhhHHhhhhcCCHH---HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 718 MSYIAEGDVKPLIKLAKTSSID---AAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~d~~---Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
..+.+ ..=..+..|++..+.+ +++.|-.+|-.+..+.. -...++.|..++++.++.++..++.+..+
T Consensus 162 ~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 162 NSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhccccc
No 333
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=27.36 E-value=1.3e+03 Score=30.16 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC-----ChhhhHHHHHHHHHHhhhccchhhHH-HhhCCC
Q 000145 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-----SEQHQEYAVQLIAILTEQVDDSKWAI-TAAGGI 518 (2054)
Q Consensus 445 d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-----d~~Vr~~Aa~aL~nLs~~s~e~r~~I-~~aGaI 518 (2054)
+.++...+..+|+|+..++...+....+......+.+.+... ...++..=+..|.-++.-..+.|..+ .+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 356778888999999998777766666555444444433211 12344455555555554445556554 467899
Q ss_pred chHhhhhhc
Q 000145 519 PPLVQLLEA 527 (2054)
Q Consensus 519 p~LV~LL~s 527 (2054)
+.+.+.|.+
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 998888864
No 334
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.85 E-value=3.6e+02 Score=29.57 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhH
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLR 118 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r 118 (2054)
+..+|++.-+......++...+ .|+......+..-+ .++..|-+-|+++++.++..|+.+|-.+.++ +..+
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l-~icD~i~~~~~~~k------ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLIL-EICDLINSSPDGAK------EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHH-HHHHHHHTSTTHHH------HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHH-HHHHHHHcCCccHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4556665544333333443333 34444444322211 2577888899999999999999999877665 4566
Q ss_pred HHHHhcCChHHHHHhhcc-CC-HH--HHHHHHHHHHHHhc
Q 000145 119 LKVLLGGCIPPLLSLLKS-ES-TD--TRKAAAEALYEVSS 154 (2054)
Q Consensus 119 ~~v~~~GaIp~LV~LL~s-ed-~e--Vr~aAa~AL~nLS~ 154 (2054)
..+.....+..|.+++.+ .. +. |++.+...|..-+.
T Consensus 79 ~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 79 REVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 666666788899998876 33 33 89999988877765
No 335
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.71 E-value=7.3e+02 Score=28.64 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=53.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
++.++++..+++..+|..|...+..+...|-- .+ .-++|.|+.+..+++ +.++..|...+..+....+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP--------~~cvp~lIAL~ts~~---~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLV-NP--------KQCVPTLIALETSPN---PSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-Ch--------HHHHhHhhhhhCCCC---hHHHHHHHHHHHHHHHHhH
Confidence 46677777778999999999999988865431 11 128999999988755 5689999999999988775
Q ss_pred ch
Q 000145 207 GY 208 (2054)
Q Consensus 207 ~r 208 (2054)
+-
T Consensus 78 s~ 79 (187)
T PF12830_consen 78 SL 79 (187)
T ss_pred HH
Confidence 43
No 336
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=26.16 E-value=1.3e+03 Score=28.34 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
|..|=..|.++|+.+|..|...|..+- ..-........-|..|++...+.- .+......++..+..|...+.
T Consensus 1 V~~Lg~~Ltsed~~~R~ka~~~Ls~vL-------~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~l~gl~~L~~~~~ 72 (262)
T PF14500_consen 1 VQSLGEYLTSEDPIIRAKALELLSEVL-------ERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPALKGLLALVKMKN 72 (262)
T ss_pred CcchhhhhCCCCHHHHHHHHHHHHHHH-------HhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHHHHHHHHHHhCcC
Q ss_pred chhHHHHhhCChHHHHhhhccCC--HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDN--AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s--~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~ 284 (2054)
-....... .+..+.+...-.+ ...|..+..+|..+...+.+.. .-...+.+..+++.++..+|+.--..+-..+.
T Consensus 73 ~~~~~~~~--i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 73 FSPESAVK--ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred CChhhHHH--HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Q ss_pred HHhhccHHHHHHHHhcCCHHHHHHhh-------cCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc
Q 000145 285 ALSSKSIKAKKAVVAADGVPVLIGAI-------VAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2054)
Q Consensus 285 nLs~~s~e~Rk~I~eaggL~~LIeLL-------~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~ 357 (2054)
.+... +--....+.+.+.+ ..|++....+.+.+.+...-..||..-..--+..++.|.+-+.++..
T Consensus 150 ~i~~~-------~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 150 VILQE-------FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSP 222 (262)
T ss_pred HHHHh-------cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCc
Q ss_pred --hhhHHHHHHHHH
Q 000145 358 --AAPVADIIGALA 369 (2054)
Q Consensus 358 --~~~iA~~LgaL~ 369 (2054)
...+...+..++
T Consensus 223 ~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 223 SVKLDSLQTLKACI 236 (262)
T ss_pred HHHHHHHHHHHHHH
No 337
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.81 E-value=4.3e+02 Score=31.58 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhH
Q 000145 655 EYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-----NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2054)
Q Consensus 655 e~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-----gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~L 729 (2054)
.+|...|--+++ +|+.+...+++.+---+..+|.. ..+..|..+...++.|.....+ .....+...++||.+
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq--~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQ--YVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCH--HHHHHHHhhhHHHHH
Confidence 345555555565 89999888888765555555532 2346788899999999873332 445567778899999
Q ss_pred HhhhhcCCHHHHHHHHHHHHHhhCChHHHHHH----Hhc----CcHHHHH-HHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 730 IKLAKTSSIDAAETAVAALANLLSDPDIAAEV----LLE----DVVSALT-RVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 730 v~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~I----v~~----g~I~~LV-~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+..+..+++--+.-|+..+.-+..++..-+.+ ..- ..+..++ ++...+..++-..+.++-.+|+.+
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999988888888888888887765433222 111 2233333 344556677777888888888764
No 338
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.75 E-value=1.5e+02 Score=33.02 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=58.9
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhC
Q 000145 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 679 g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~ 753 (2054)
.++..|.+-+.++++.++..|...|..+...... ..+..+...+.+..|++++.. .+..|+..++..+..|+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~--~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK--RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH--HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3456677777888999999999999888873222 566778888899999999988 789999999999998863
No 339
>PRK09169 hypothetical protein; Validated
Probab=24.42 E-value=3.2e+03 Score=32.45 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=32.9
Q ss_pred CcHHHHHHHHc-cCCHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHH
Q 000145 84 QAMPLFISILR-SGTPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEV 152 (2054)
Q Consensus 84 GgVp~LV~LLk-s~s~evr~~AA~vL-~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nL 152 (2054)
..|..++..|. .++......++..| ..|..+...+.. .....+..++..|+. ++......++..|..-
T Consensus 163 ~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~r 233 (2316)
T PRK09169 163 ISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAER 233 (2316)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555665554 35444444555555 445555444433 233445666666665 4333334444444333
No 340
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.18 E-value=1.9e+02 Score=31.44 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc---CCHHHHHHHHHHHHHhhC
Q 000145 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT---SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 679 g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s---~d~~Vre~Al~AL~NLa~ 753 (2054)
.++..|.+-++++++.++..|...|..+...... ..+..+.....+..|++++.. .+..|+..++..+.+|+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~--~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK--PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh--HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456677778889999999999999888873222 466677777788889999875 578999999999999864
No 341
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.69 E-value=3.1e+03 Score=31.98 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=67.3
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhch-----hhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADS-----ATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~-----~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
...++..+.+.+|..+..++.+++.++..... +......+-+. .+++-.+....-+++.+......--..+
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q--- 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ--- 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch---
Confidence 34455667788999999999999999876432 22333333344 4444445555566666643211100000
Q ss_pred hcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhh
Q 000145 634 AANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGS 674 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~ 674 (2054)
-...++..+..+.+++ ++.++..+..+++.+..........
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~ 996 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRV 996 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehh
Confidence 0123456677777776 5699999999999987654444433
No 342
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.42 E-value=2.4e+02 Score=31.40 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=60.5
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhhcC
Q 000145 725 DVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 725 aV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+++.|.+-+.+.++.++..|+..|-.+.. .+..+.++...+.+..|++++.. .++.++......+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 66677777788899999999999999986 45567788888899999999988 78999999999998887654
No 343
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.23 E-value=1.2e+02 Score=33.00 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=62.4
Q ss_pred CcccchHHHHHhhcCChhHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHHHhhcc-h-hhHHHHHHHHHHHHhhhh
Q 000145 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQLAGIG-I-LNLQQTAVKALEKISTSW 1630 (2054)
Q Consensus 1555 ~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~~~pl~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 1630 (2054)
.+..|+..|-.=|.++++.+|-.|-+||+.+..| .+|+....++-.+-.|+.++.-- - ...+++++.-+. .|
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~----~W 109 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQ----EW 109 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH----HH
Confidence 5667888999999999999999999999999999 89999999999999999887762 2 226666665554 57
Q ss_pred hhHHh
Q 000145 1631 PKAVA 1635 (2054)
Q Consensus 1631 ~~~~~ 1635 (2054)
..++.
T Consensus 110 ~~~f~ 114 (133)
T smart00288 110 ADAFK 114 (133)
T ss_pred HHHHc
Confidence 66653
No 344
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.13 E-value=1.5e+03 Score=27.93 Aligned_cols=177 Identities=19% Similarity=0.199 Sum_probs=103.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccC--------chhHHHHHhcCChHHHHHhhccCC----HHHHHHHHHHHH
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKD--------EDLRLKVLLGGCIPPLLSLLKSES----TDTRKAAAEALY 150 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~--------ee~r~~v~~~GaIp~LV~LL~sed----~eVr~aAa~AL~ 150 (2054)
.|..+.+++-|++.. .-..+..+|..+..- .++|-.+.-.+.+|.++.-+.+++ ......+|..|.
T Consensus 63 ~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 455555556666543 445566677665432 224555555577788887777755 245567778999
Q ss_pred HHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCC
Q 000145 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN 229 (2054)
Q Consensus 151 nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s-~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s 229 (2054)
.+|... .. +.+..++.....+. +........+...|+.-...+- +...+..+..+|.++.
T Consensus 141 ~~a~~~---~~---------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-------~~~~l~~Ll~lL~n~~ 201 (262)
T PF14225_consen 141 QVAEAQ---GL---------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-------EFQILTFLLGLLENGP 201 (262)
T ss_pred HHHHhC---CC---------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-------HHHHHHHHHHHHhCCc
Confidence 998631 11 23444444443222 1222344455555555442111 1125677889999988
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000145 230 AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2054)
Q Consensus 230 ~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nL 286 (2054)
+.++..++.+|+.+... .+.++. .....+.+++++++. +.-..|.++|.+.
T Consensus 202 ~w~~~~~L~iL~~ll~~-~d~~~~-~~~dlispllrlL~t----~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPH-VDMRSP-HGADLISPLLRLLQT----DLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHHHHHhcc-ccCCCC-cchHHHHHHHHHhCC----ccHHHHHHHHHHH
Confidence 99999999999998832 222233 455689999999984 2233466666554
No 345
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.91 E-value=75 Score=35.19 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=66.0
Q ss_pred CcccchHHHHHhhcCChhHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHHHhhc-chhhHHHHHHHHHHHHhhhhh
Q 000145 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQLAGI-GILNLQQTAVKALEKISTSWP 1631 (2054)
Q Consensus 1555 ~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~~~pl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1631 (2054)
.+..|+.+|-.-|.++...+|-.|-.||+.+..| .+|+....++-.+--|++++-- .-...+++++.-+...+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999999 8999999999999999999853 445678888877766555444
No 346
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.97 E-value=4.1e+02 Score=30.05 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred chHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.++.|..+++++ +..+|..+.++|..|+.-+|-..+.+....--.. -.+.+...... .+.+...+ + .
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~----~~~~~~~~~~~---~l~~~~~~-~----~ 78 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS----SENSNDESTDI---SLPMMGIS-P----S 78 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc----cccccccchhh---HHhhccCC-C----c
Confidence 577888889887 6999999999999998866654443322111000 00111111111 11111110 0 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHH-HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDA-AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~V-re~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
.....-.-++..|+..|++.+-.. ...++.++.++......+-.-.-+..+|.+++.++..++..++.--+-|+.|.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 112223346677888887754332 33577777777642222111112347899999998877788877666666554
No 347
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.87 E-value=2.8e+02 Score=34.09 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=73.0
Q ss_pred cchhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhH---------hhhhcchhhhhHhhhcc-----cchhHHHHHHHH
Q 000145 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVE---------LVEGYDVVDLLVRLVSG-----TNHRLVEATVCA 1453 (2054)
Q Consensus 1388 ~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~---------~~~~~~~v~~lv~~~~~-----~~~~l~~~~~~~ 1453 (2054)
.-++=|+..+++..+..++.-|+++|.||+..-.-.+ +-.=++|+.|..-++.. .-+.|.+.+..|
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4578899999999999999999999999998655555 22225577777766654 667899999999
Q ss_pred HHHhhc--------CCCchhHHHhhhhhhhHhhhhC----CCCchHHHHHHHHHHHh
Q 000145 1454 LIKLGK--------DRTPRKLQMVKAGIIDNCLDLL----PVAPSALCSTIAELFRI 1498 (2054)
Q Consensus 1454 l~~~~~--------~~~~~~~~~~~~g~i~~~~~~~----~~~p~~l~~~~a~~~~~ 1498 (2054)
|.++.+ .|....-+++-.|++..+.-.. |.....++.....+++.
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 999943 3333334455555444322111 22224555555555533
No 348
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.69 E-value=4.7e+02 Score=28.68 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=55.2
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhh-cCCCcchhcccchHHHHHHHhccCCChh---HHHHHHHHHHHHhh
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLA-FGDSIPTVIDSGAVKALVQLVGQNNDIS---VRASAADALEALSS 288 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~-~~~~r~~i~~sGaL~~LL~LL~s~~d~~---Vr~~Aa~aL~nLs~ 288 (2054)
++..|-+.|.+.++.++..|+.+|-.+... .+..+..+.....+..|..++....... |+..+...+.....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 567788888899999999999999888743 3566677778889999999886444433 78888877776655
Done!