Query 000145
Match_columns 2054
No_of_seqs 510 out of 3118
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 7.4E-43 2.5E-47 460.6 63.7 709 35-841 2-782 (810)
2 3now_A UNC-45 protein, SD10334 100.0 4.2E-44 1.4E-48 472.5 46.0 689 127-892 8-739 (810)
3 1jdh_A Beta-catenin; beta-cate 100.0 9.9E-36 3.4E-40 378.3 42.6 506 83-752 16-529 (529)
4 2z6g_A B-catenin; FULL-length, 100.0 1.9E-35 6.4E-40 396.3 46.9 544 83-797 114-666 (780)
5 1jdh_A Beta-catenin; beta-cate 100.0 3.6E-35 1.2E-39 373.2 44.6 508 122-792 14-528 (529)
6 2z6g_A B-catenin; FULL-length, 100.0 2.4E-35 8.3E-40 395.2 42.8 563 40-780 116-688 (780)
7 2z6h_A Catenin beta-1, beta-ca 100.0 4E-35 1.4E-39 385.1 43.0 528 83-778 13-550 (644)
8 2z6h_A Catenin beta-1, beta-ca 100.0 2.8E-34 9.7E-39 377.1 45.1 510 122-796 11-529 (644)
9 3ul1_B Importin subunit alpha- 100.0 1.1E-31 3.6E-36 343.7 36.1 415 433-892 58-480 (510)
10 3tpo_A Importin subunit alpha- 100.0 6E-31 2E-35 338.0 37.2 416 432-892 76-499 (529)
11 3ul1_B Importin subunit alpha- 100.0 9.9E-30 3.4E-34 325.5 33.9 397 393-795 60-479 (510)
12 4b8j_A Importin subunit alpha- 100.0 1E-28 3.5E-33 315.9 40.1 403 432-842 74-497 (528)
13 3tpo_A Importin subunit alpha- 100.0 5.3E-29 1.8E-33 320.0 36.1 396 393-794 79-497 (529)
14 3l6x_A Catenin delta-1; cateni 100.0 2.7E-29 9.2E-34 322.6 32.1 361 429-796 45-478 (584)
15 1xm9_A Plakophilin 1; armadill 100.0 6.2E-29 2.1E-33 314.1 30.0 358 433-797 3-452 (457)
16 1wa5_B Importin alpha subunit; 100.0 7.3E-28 2.5E-32 308.6 40.3 404 431-842 86-511 (530)
17 3l6x_A Catenin delta-1; cateni 100.0 4.2E-28 1.4E-32 311.6 35.7 375 383-766 42-489 (584)
18 3nmz_A APC variant protein; pr 100.0 1.2E-28 4.1E-33 310.1 29.4 363 393-798 35-454 (458)
19 2jdq_A Importin alpha-1 subuni 100.0 8.1E-28 2.8E-32 299.0 36.3 400 433-841 21-443 (450)
20 4b8j_A Importin subunit alpha- 100.0 1E-27 3.4E-32 306.7 37.5 397 392-795 76-497 (528)
21 1wa5_B Importin alpha subunit; 100.0 2.4E-27 8.3E-32 303.7 37.3 402 391-796 88-512 (530)
22 2jdq_A Importin alpha-1 subuni 100.0 2.2E-27 7.5E-32 295.1 32.9 396 393-796 23-445 (450)
23 1xm9_A Plakophilin 1; armadill 100.0 3.4E-27 1.2E-31 298.2 32.1 361 475-844 3-452 (457)
24 3nmz_A APC variant protein; pr 100.0 3.3E-27 1.1E-31 297.0 28.5 391 218-712 34-454 (458)
25 3opb_A SWI5-dependent HO expre 99.9 2.7E-24 9.4E-29 279.4 31.7 499 411-931 232-773 (778)
26 3nmw_A APC variant protein; AR 99.9 2.6E-24 9E-29 263.1 24.2 275 485-798 43-338 (354)
27 3nmw_A APC variant protein; AR 99.9 4.6E-24 1.6E-28 261.0 25.2 272 407-712 48-338 (354)
28 3opb_A SWI5-dependent HO expre 99.9 1.2E-20 3.9E-25 245.6 40.1 494 233-824 229-761 (778)
29 4fdd_A Transportin-1; heat rep 99.9 9.2E-19 3.1E-23 236.9 49.2 704 36-894 10-788 (852)
30 4hxt_A De novo protein OR329; 99.9 1.9E-20 6.4E-25 214.1 25.1 242 516-797 2-244 (252)
31 4hxt_A De novo protein OR329; 99.9 1.7E-20 5.7E-25 214.6 23.5 241 432-709 2-242 (252)
32 4db8_A Armadillo-repeat protei 99.8 3.3E-20 1.1E-24 213.6 21.8 240 474-753 12-251 (252)
33 4db8_A Armadillo-repeat protei 99.8 2.9E-20 1E-24 214.0 20.0 240 432-708 12-251 (252)
34 1b3u_A Protein (protein phosph 99.8 8.3E-18 2.8E-22 215.7 44.7 569 127-840 12-586 (588)
35 1b3u_A Protein (protein phosph 99.8 5.8E-18 2E-22 217.1 42.9 569 86-793 12-586 (588)
36 4fdd_A Transportin-1; heat rep 99.8 1.7E-16 5.7E-21 214.8 53.3 682 51-797 58-787 (852)
37 1u6g_C TIP120 protein, CAND1; 99.8 4.9E-14 1.7E-18 198.0 61.3 687 39-777 6-745 (1230)
38 4db6_A Armadillo repeat protei 99.8 1.9E-17 6.4E-22 185.6 20.9 199 473-708 11-209 (210)
39 1u6g_C TIP120 protein, CAND1; 99.8 2.6E-13 8.8E-18 190.7 67.4 1067 218-1550 8-1191(1230)
40 2bpt_A Importin beta-1 subunit 99.8 6.2E-14 2.1E-18 188.4 58.2 740 40-840 5-856 (861)
41 4db6_A Armadillo repeat protei 99.7 3.7E-17 1.3E-21 183.2 19.0 200 387-587 9-209 (210)
42 1qgr_A Protein (importin beta 99.7 3.4E-14 1.2E-18 191.3 50.0 772 41-930 3-866 (876)
43 2bpt_A Importin beta-1 subunit 99.7 3.7E-13 1.3E-17 180.9 57.3 732 87-915 7-835 (861)
44 3tt9_A Plakophilin-2; cell adh 99.7 4.8E-17 1.6E-21 187.6 15.2 196 474-708 8-229 (233)
45 3tt9_A Plakophilin-2; cell adh 99.7 3.1E-16 1.1E-20 180.8 18.7 199 41-246 10-230 (233)
46 1qgr_A Protein (importin beta 99.7 5.7E-13 1.9E-17 179.4 50.1 694 42-794 38-871 (876)
47 1xqr_A HSPBP1 protein; armadil 99.7 2.5E-15 8.4E-20 179.7 21.7 184 488-709 54-239 (296)
48 1xqr_A HSPBP1 protein; armadil 99.6 7.6E-15 2.6E-19 175.4 22.0 202 36-246 25-239 (296)
49 2vgl_B AP-2 complex subunit be 99.5 5.8E-12 2E-16 164.2 38.6 510 217-841 14-532 (591)
50 2vgl_B AP-2 complex subunit be 99.5 1.3E-11 4.6E-16 160.8 41.8 515 83-757 12-536 (591)
51 3grl_A General vesicular trans 99.5 1.8E-11 6.1E-16 156.4 37.7 445 34-526 16-527 (651)
52 1oyz_A Hypothetical protein YI 99.5 1.2E-12 4.1E-17 153.6 21.3 253 472-790 21-278 (280)
53 1oyz_A Hypothetical protein YI 99.5 3.7E-12 1.3E-16 149.5 24.6 254 514-836 21-277 (280)
54 1w63_A Adapter-related protein 99.4 1.3E-09 4.3E-14 143.0 47.7 493 125-762 70-586 (618)
55 1w63_A Adapter-related protein 99.4 1.7E-09 5.7E-14 141.9 44.1 433 397-888 114-575 (618)
56 3grl_A General vesicular trans 99.4 7E-10 2.4E-14 142.0 38.8 406 407-820 38-527 (651)
57 3ltm_A Alpha-REP4; protein eng 99.3 9.4E-11 3.2E-15 131.7 18.8 189 556-796 17-205 (211)
58 3ltm_A Alpha-REP4; protein eng 99.2 1.4E-10 4.8E-15 130.2 17.8 186 473-708 18-203 (211)
59 3ltj_A Alpharep-4; protein eng 99.2 2.9E-10 9.9E-15 126.7 20.0 186 557-794 13-198 (201)
60 3ltj_A Alpharep-4; protein eng 99.2 1.5E-10 5E-15 129.1 17.4 186 472-707 12-197 (201)
61 1ibr_B P95, importin beta-1 su 99.2 9.3E-09 3.2E-13 127.7 31.8 389 220-708 5-437 (462)
62 1ibr_B P95, importin beta-1 su 99.1 6.3E-09 2.1E-13 129.2 29.2 384 478-892 5-439 (462)
63 2vgl_A Adaptor protein complex 99.0 5E-06 1.7E-10 109.1 47.2 512 100-754 55-590 (621)
64 2vgl_A Adaptor protein complex 98.9 5.3E-07 1.8E-11 118.3 33.8 429 399-888 120-587 (621)
65 4ady_A RPN2, 26S proteasome re 98.8 3E-05 1E-09 103.9 47.1 325 407-794 374-719 (963)
66 4ady_A RPN2, 26S proteasome re 98.6 2.4E-05 8.2E-10 104.8 32.9 337 440-840 366-718 (963)
67 4gmo_A Putative uncharacterize 98.4 1.2E-06 4.2E-11 116.1 13.3 194 638-840 35-257 (684)
68 4gmo_A Putative uncharacterize 98.3 4.7E-07 1.6E-11 120.1 8.4 199 85-288 35-258 (684)
69 3b2a_A TON_1937, putative unch 98.1 7.1E-05 2.4E-09 84.8 18.0 216 557-791 32-258 (265)
70 1te4_A Conserved protein MTH18 97.9 1E-06 3.5E-11 92.1 -0.4 121 636-792 11-131 (131)
71 1te4_A Conserved protein MTH18 97.9 1.9E-06 6.6E-11 90.0 0.6 119 473-617 11-129 (131)
72 1wa5_C Importin alpha RE-expor 97.8 0.044 1.5E-06 75.4 42.6 538 43-666 39-670 (960)
73 2qk2_A LP04448P; mini spindles 97.8 0.00011 3.6E-09 84.5 14.2 145 638-795 57-206 (242)
74 2db0_A 253AA long hypothetical 97.8 0.0065 2.2E-07 66.4 25.3 212 556-794 30-246 (253)
75 2qk2_A LP04448P; mini spindles 97.8 0.00051 1.8E-08 78.8 17.8 179 561-752 18-204 (242)
76 3b2a_A TON_1937, putative unch 97.7 0.00019 6.6E-09 81.3 13.3 211 474-699 33-252 (265)
77 2x1g_F Cadmus; transport prote 97.7 0.077 2.6E-06 72.9 41.1 653 93-797 16-817 (971)
78 2x19_B Importin-13; nuclear tr 97.7 0.47 1.6E-05 64.9 59.2 330 484-841 459-846 (963)
79 1wa5_C Importin alpha RE-expor 97.6 0.089 3.1E-06 72.4 39.5 225 648-891 416-671 (960)
80 3tjz_B Coatomer subunit gamma; 97.5 0.0021 7.3E-08 78.5 19.7 276 434-748 70-348 (355)
81 3tjz_B Coatomer subunit gamma; 97.4 0.0025 8.4E-08 77.9 18.0 270 593-915 69-348 (355)
82 2x1g_F Cadmus; transport prote 97.3 0.33 1.1E-05 66.6 39.4 134 649-797 476-618 (971)
83 2qk1_A Protein STU2; STU2P, XM 97.2 0.0045 1.5E-07 72.0 16.8 184 563-752 21-219 (249)
84 2qk1_A Protein STU2; STU2P, XM 97.1 0.0054 1.9E-07 71.3 16.1 186 437-622 21-221 (249)
85 2x19_B Importin-13; nuclear tr 97.1 1.1 3.6E-05 61.4 40.9 409 406-841 118-599 (963)
86 3ibv_A Exportin-T; karyopherin 97.1 0.95 3.3E-05 62.5 39.7 225 38-289 5-261 (980)
87 2db0_A 253AA long hypothetical 97.0 0.042 1.4E-06 60.2 19.8 215 590-840 30-245 (253)
88 1ho8_A Vacuolar ATP synthase s 96.9 0.1 3.5E-06 65.5 25.4 348 83-504 76-477 (480)
89 1lrv_A LRV, leucine-rich repea 96.9 0.0006 2.1E-08 79.2 4.7 186 480-789 56-241 (244)
90 1ho8_A Vacuolar ATP synthase s 96.8 0.17 5.8E-06 63.6 26.5 341 432-795 77-477 (480)
91 2iw3_A Elongation factor 3A; a 96.7 0.14 4.8E-06 69.9 25.8 295 479-795 19-325 (986)
92 2iw3_A Elongation factor 3A; a 96.6 0.12 4.1E-06 70.5 24.7 288 439-751 21-322 (986)
93 3m1i_C Exportin-1; heat repeat 96.4 4.4 0.00015 56.2 39.3 492 227-752 27-617 (1049)
94 3dad_A FH1/FH2 domain-containi 96.3 0.072 2.5E-06 64.0 17.4 153 86-246 120-287 (339)
95 3dad_A FH1/FH2 domain-containi 96.3 0.11 3.6E-06 62.5 18.8 181 639-822 120-317 (339)
96 1lrv_A LRV, leucine-rich repea 96.1 0.0025 8.5E-08 74.1 3.9 186 439-749 57-242 (244)
97 4hat_C Exportin-1; heat repeat 96.1 5.2 0.00018 55.5 36.8 227 85-339 17-263 (1023)
98 4hat_C Exportin-1; heat repeat 96.0 8.8 0.0003 53.2 39.1 502 218-753 18-618 (1023)
99 3m1i_C Exportin-1; heat repeat 95.2 17 0.00057 50.5 42.7 220 92-339 24-263 (1049)
100 3ibv_A Exportin-T; karyopherin 94.7 5.1 0.00018 55.3 29.2 473 391-896 8-572 (980)
101 3oc3_A Helicase MOT1, MOT1; re 92.5 1.3 4.5E-05 56.1 15.1 217 638-889 175-403 (800)
102 2of3_A ZYG-9; multifunctional 92.4 1.1 3.7E-05 52.6 13.9 175 562-752 50-235 (266)
103 4ffb_C Protein STU2; tubulin f 91.1 2.1 7.2E-05 49.9 14.7 148 639-795 57-213 (278)
104 2of3_A ZYG-9; multifunctional 90.9 4.4 0.00015 47.5 16.8 170 519-708 49-236 (266)
105 4ffb_C Protein STU2; tubulin f 90.4 8.6 0.00029 44.7 19.0 190 89-288 14-212 (278)
106 1upk_A MO25 protein; transfera 89.9 9.3 0.00032 46.1 18.6 195 471-666 75-283 (341)
107 2fv2_A RCD1 required for cell 88.8 4.5 0.00016 46.9 14.2 193 39-244 3-223 (268)
108 1lsh_A Lipovitellin (LV-1N, LV 87.3 13 0.00045 51.7 20.5 202 559-796 357-578 (1056)
109 3oc3_A Helicase MOT1, MOT1; re 86.6 1.7 6E-05 55.0 9.7 206 560-793 176-403 (800)
110 3gjx_A Exportin-1; transport, 86.2 1.3E+02 0.0043 42.1 36.2 227 85-339 29-275 (1073)
111 1rlw_A Phospholipase A2, CALB 85.6 0.3 1E-05 49.9 2.1 42 2009-2050 2-50 (126)
112 3l9t_A Putative uncharacterize 84.6 5.8 0.0002 45.6 12.1 137 523-676 78-217 (240)
113 3l9t_A Putative uncharacterize 83.6 25 0.00086 40.5 16.8 143 593-762 72-217 (240)
114 1upk_A MO25 protein; transfera 83.3 50 0.0017 39.9 19.8 200 426-628 72-290 (341)
115 1lsh_A Lipovitellin (LV-1N, LV 82.6 32 0.0011 47.8 20.8 207 584-841 348-576 (1056)
116 3u0r_A Apoptosis inhibitor 5; 81.1 6.8 0.00023 49.2 11.7 122 527-664 39-161 (507)
117 3u0r_A Apoptosis inhibitor 5; 80.2 13 0.00043 46.8 13.7 163 569-751 39-204 (507)
118 2dmh_A Myoferlin; beta-sandwic 79.9 0.74 2.5E-05 47.9 2.4 43 2007-2050 4-47 (140)
119 3ebb_A Phospholipase A2-activa 79.6 17 0.00058 43.4 14.2 130 650-783 161-295 (304)
120 2fv2_A RCD1 required for cell 76.9 1.2E+02 0.004 35.4 19.6 153 492-675 74-232 (268)
121 2enp_A B/K protein; C2 type 1, 75.5 1.3 4.6E-05 46.5 2.9 43 2008-2050 24-77 (147)
122 1rh8_A Piccolo protein; beta-s 75.4 0.64 2.2E-05 48.5 0.4 45 2005-2049 13-72 (142)
123 2chd_A Rabphilin-3A, exophilin 73.3 1.1 3.9E-05 46.7 1.6 43 2008-2050 27-75 (142)
124 3rdl_A Protein kinase C alpha 72.4 1.7 6E-05 44.8 2.8 42 2009-2050 15-62 (137)
125 3eg5_B Protein diaphanous homo 72.0 1.2E+02 0.0041 37.3 19.4 110 42-155 69-192 (383)
126 2nq3_A Itchy homolog E3 ubiqui 72.0 1.2 4.1E-05 48.7 1.5 45 2005-2050 31-77 (173)
127 1a25_A CALB, protein kinase C 70.5 1.9 6.6E-05 45.4 2.6 43 2008-2050 29-77 (149)
128 2b3r_A Phosphatidylinositol-4- 70.3 2.3 7.8E-05 44.2 3.1 45 2006-2050 16-65 (134)
129 3pyc_A E3 ubiquitin-protein li 68.6 1.8 6.3E-05 44.5 1.9 42 2009-2050 4-48 (132)
130 3a6p_A Exportin-5; exportin-5, 68.0 74 0.0025 44.9 18.4 200 529-753 26-276 (1204)
131 2ep6_A MCTP2 protein; beta san 67.6 1.8 6.2E-05 44.7 1.6 41 2009-2050 12-54 (133)
132 3kwu_A MUNC13-1; calcium bindi 67.1 1.8 6.3E-05 45.4 1.6 41 2009-2050 16-58 (148)
133 1rsy_A Synaptotagmin I; calciu 67.0 2.3 8E-05 45.0 2.4 43 2008-2050 40-86 (152)
134 3fdw_A Synaptotagmin-like prot 67.0 2.3 7.8E-05 44.8 2.3 42 2009-2050 22-70 (148)
135 1w15_A Synaptotagmin IV; metal 66.8 2 6.9E-05 45.4 1.8 43 2008-2050 28-76 (153)
136 3n5a_A Synaptotagmin-7; calciu 66.4 1.8 6.1E-05 44.7 1.3 41 2009-2049 15-61 (138)
137 3f04_A Synaptotagmin-1; C2A, c 66.3 2.8 9.7E-05 43.7 2.8 43 2008-2050 32-78 (143)
138 2q3x_A Regulating synaptic mem 65.8 2 6.8E-05 46.6 1.6 43 2008-2050 28-77 (171)
139 2cm5_A Rabphilin-3A; protein t 65.4 2.7 9.2E-05 45.2 2.5 43 2008-2050 35-83 (166)
140 2d8k_A Synaptotagmin VII; exoc 65.2 2.6 8.7E-05 44.0 2.2 42 2008-2049 24-69 (141)
141 2f31_A Diaphanous protein homo 64.6 1.8E+02 0.006 33.1 17.6 147 636-783 42-217 (233)
142 3a6p_A Exportin-5; exportin-5, 64.4 4.5E+02 0.016 37.0 40.1 146 35-204 7-163 (1204)
143 3ebb_A Phospholipase A2-activa 63.7 88 0.003 37.2 15.3 150 408-558 119-276 (304)
144 2z0u_A WW domain-containing pr 63.7 3.8 0.00013 43.9 3.3 43 2008-2050 41-90 (155)
145 2bwq_A Regulating synaptic mem 63.3 2.4 8.3E-05 43.3 1.6 42 2009-2050 17-64 (129)
146 3gs3_A Symplekin, LD45768P; he 62.6 1.2E+02 0.004 35.3 15.7 165 32-244 8-172 (257)
147 3eg5_B Protein diaphanous homo 61.8 1.1E+02 0.0037 37.6 16.1 124 55-182 134-275 (383)
148 2f31_A Diaphanous protein homo 61.8 1.1E+02 0.0037 34.8 15.2 121 55-178 68-206 (233)
149 3b7y_A E3 ubiquitin-protein li 61.4 2.5 8.5E-05 44.6 1.3 45 2006-2050 16-67 (153)
150 2bnx_A Diaphanous protein homo 60.8 1.8E+02 0.006 35.8 17.8 108 44-155 9-130 (386)
151 1tjx_A Similar to synaptotagmi 60.6 3.2 0.00011 44.2 2.0 43 2008-2050 23-71 (159)
152 1v27_A Regulating synaptic mem 60.1 3.8 0.00013 42.3 2.4 42 2009-2050 20-67 (141)
153 1wfj_A Putative elicitor-respo 59.4 3.8 0.00013 42.2 2.2 41 2008-2049 8-50 (136)
154 2dmg_A KIAA1228 protein; beta- 55.8 5.6 0.00019 41.3 2.8 41 2009-2050 23-69 (142)
155 2fk9_A Protein kinase C, ETA t 54.8 2.9 0.0001 45.1 0.5 45 2006-2050 25-81 (157)
156 2bnx_A Diaphanous protein homo 54.4 1.9E+02 0.0065 35.5 16.5 124 55-182 72-213 (386)
157 1ugk_A Synaptotagmin IV, KIAA1 54.1 4.9 0.00017 41.6 2.0 43 2008-2050 20-67 (138)
158 3c2g_A SYS-1 protein; beta-cat 53.0 74 0.0025 38.3 11.5 135 100-242 259-400 (619)
159 3fbk_A RGS3, RGP3, regulator o 49.9 7.1 0.00024 41.3 2.5 42 2008-2049 25-71 (153)
160 3o2t_A Symplekin; heat repeat, 49.2 2.3E+02 0.0078 34.9 15.8 160 36-244 22-182 (386)
161 1gmi_A Protein kinase C, epsil 48.3 4.3 0.00015 42.1 0.4 44 2007-2050 3-59 (136)
162 1wfm_A Synaptotagmin XIII; C2 47.1 5.8 0.0002 41.3 1.2 42 2008-2050 24-68 (138)
163 2r83_A Synaptotagmin-1; C2A-C2 44.9 9.5 0.00033 44.3 2.8 43 2008-2050 17-63 (284)
164 3c2g_A SYS-1 protein; beta-cat 42.0 2.2E+02 0.0074 34.5 13.1 132 410-543 262-401 (619)
165 3gs3_A Symplekin, LD45768P; he 40.2 4.9E+02 0.017 30.1 19.6 86 531-620 30-118 (257)
166 1dqv_A Synaptotagmin III; beta 39.4 14 0.00046 43.6 2.9 44 2007-2050 17-64 (296)
167 2cjt_A UNC-13 homolog A, MUNC1 35.7 12 0.0004 38.9 1.3 35 2010-2048 5-39 (131)
168 1dqv_A Synaptotagmin III; beta 34.4 17 0.00058 42.8 2.6 41 2009-2049 151-197 (296)
169 1cjy_A CPLA2, protein (cytosol 30.0 18 0.00063 48.2 2.1 43 2008-2050 16-65 (749)
170 3o2t_A Symplekin; heat repeat, 29.1 3.9E+02 0.013 32.9 13.3 64 557-620 62-128 (386)
171 1vsy_5 Proteasome activator BL 28.8 1.3E+03 0.045 31.7 22.5 340 519-898 511-975 (997)
172 3gae_A Protein DOA1; UFD3, CDC 28.7 2.3E+02 0.0079 32.7 10.8 102 735-842 101-218 (253)
173 3nsj_A Perforin-1; pore formin 27.4 17 0.00059 46.7 1.2 39 2011-2050 395-434 (540)
174 3jzy_A Intersectin 2; C2 domai 26.9 20 0.0007 45.2 1.7 45 2005-2050 382-428 (510)
175 3pst_A Protein DOA1; protein d 26.7 3.2E+02 0.011 34.0 12.1 105 647-758 272-395 (425)
176 3l9b_A Otoferlin; C2-domain, b 26.0 29 0.00099 37.0 2.3 36 2011-2050 22-57 (144)
177 3qml_C Protein SLS1, nucleotid 25.9 8E+02 0.027 29.3 14.6 148 87-244 25-188 (315)
178 2r83_A Synaptotagmin-1; C2A-C2 24.0 25 0.00085 40.8 1.6 42 2009-2050 149-196 (284)
179 3gae_A Protein DOA1; UFD3, CDC 23.7 73 0.0025 36.9 5.4 99 648-753 101-217 (253)
180 1mhq_A ADP-ribosylation factor 22.1 3.1E+02 0.011 29.1 9.4 70 85-154 39-116 (148)
181 1juq_A ADP-ribosylation factor 22.0 80 0.0027 34.5 5.0 78 1555-1632 47-132 (171)
182 3zyq_A Hepatocyte growth facto 21.4 2.5E+02 0.0085 31.8 9.1 72 217-288 46-118 (226)
183 3zyq_A Hepatocyte growth facto 21.1 1.6E+02 0.0055 33.4 7.4 70 85-154 46-118 (226)
184 3ldz_A STAM-1, signal transduc 20.4 2.2E+02 0.0074 29.9 7.8 71 725-795 43-115 (140)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-43 Score=460.65 Aligned_cols=709 Identities=16% Similarity=0.152 Sum_probs=557.5
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcc
Q 000145 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCK 113 (2054)
Q Consensus 35 ~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~ 113 (2054)
.+|.++|.+|++-+.+.+.+.+.|++|..+|..|++++..+..++. .|||..|..+|++ .++++...|.++|..+|+
T Consensus 2 ~~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 3678999999999988788889999999999999999877777664 5999999999999 789999999999999999
Q ss_pred CchhHHH-HHhcCChHHHHHhhccCCHHHHHHHHHHHHHHh---cCCCCCChhHH-HHHHHc------CcHHHHHHhhCC
Q 000145 114 DEDLRLK-VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS---SGGLSDDHVGM-KIFVTE------GVVPTLWDQLNP 182 (2054)
Q Consensus 114 ~ee~r~~-v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS---~~~~nk~~~~r-e~Iv~a------G~Vp~Lv~LL~s 182 (2054)
++..|.. +...=++|.+++++.+++++...+++..|..+- .+++++.+.++ +.++.. ..+..|++++.+
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 9877764 445578999999999988888887777665543 22333333222 222222 267778888887
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhH-HHHhhCChHHHHhhhccC-----------CHHHHHHHHHHHHHHHhhcC-C
Q 000145 183 KNKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSD-----------NAAAQSNAASLLARLMLAFG-D 249 (2054)
Q Consensus 183 ~s~~d~~V~e~Al~aL~nL~~~~e~r~~-aI~eaGGI~~LV~LL~s~-----------s~evq~~A~~aL~nLs~~~~-~ 249 (2054)
.... ...+..++..|..-....+..+. -....+|+..++...... .+++|.++.-+|.++...-. +
T Consensus 160 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 238 (810)
T 3now_A 160 RTIS-GAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYD 238 (810)
T ss_dssp TTSC-HHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSH
T ss_pred cccC-hhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccc
Confidence 7633 35577888888777755543222 244467998888876651 45799999999999984211 1
Q ss_pred CcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHH-hcCCHHHHHHhhcCCchhhhhhhhhhhhhh
Q 000145 250 SIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV-AADGVPVLIGAIVAPSKECMQGQRGQALQG 328 (2054)
Q Consensus 250 ~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~-eaggL~~LIeLL~s~s~e~~q~~~~~~lqe 328 (2054)
..+.....-+-..+-..+. ..+.+.+..+.+++.++....++....+. ..|.++.|+.++.+++.. .|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~---------~q~ 308 (810)
T 3now_A 239 EAKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL---------QQR 308 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH---------HHH
T ss_pred hhHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH---------HHH
Confidence 1123333334455555555 45667778899999999888778777666 789999999999987654 678
Q ss_pred HHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHH
Q 000145 329 HATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQ 408 (2054)
Q Consensus 329 ~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq 408 (2054)
.|++++.+++++ . ..++.+...++ ++|+.+++..++ .+|
T Consensus 309 ~A~~al~~aa~~-~--------------------------------------~~R~~I~~~gv-~~L~~Ll~s~~~-~vr 347 (810)
T 3now_A 309 VACECLIAASSK-K--------------------------------------DKAKALCEQGV-DILKRLYHSKND-GIR 347 (810)
T ss_dssp HHHHHHHHHTTS-H--------------------------------------HHHHTTHHHHH-HHHHHHTTCSCH-HHH
T ss_pred HHHHHHHHHcCC-c--------------------------------------HHHHHHHHcCc-HHHHHHHcCCCH-HHH
Confidence 899998887652 1 11233344566 899999987664 589
Q ss_pred HHHHHHHHHhhcCh--hhhHHHhhcc----hHHHHHHHhccC--CHHHHHHHHHHHHHhcccCccchhhhh-ccccHHHH
Q 000145 409 ERVLEAMASLYGNI--FLSQWVSHAE----AKKVLIGLITMA--TADVREYLILSLTKLCRREVGIWEAIG-KREGIQLL 479 (2054)
Q Consensus 409 ~~Aa~AL~~L~~n~--~~~~~L~~~g----~I~~LI~LL~ss--d~evq~~Aa~AL~~Ls~~s~e~r~~Iv-e~ggIp~L 479 (2054)
.+++.+|+++..+. +........+ .++.++.++.++ +.+++..++++|.+++.+ ++.+..++ +.|++|.|
T Consensus 348 ~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~L 426 (810)
T 3now_A 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHAL 426 (810)
T ss_dssp HHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHH
Confidence 99999999996432 2222222233 356788888887 899999999999999998 56666665 57899999
Q ss_pred HhhhcCCChhhhHHHHHHHHHHhhhccc-----------------------------hh---hHHHhhCCCchHhhhhhc
Q 000145 480 ISLLGLSSEQHQEYAVQLIAILTEQVDD-----------------------------SK---WAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 480 V~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-----------------------------~r---~~I~~aGaIp~LV~LL~s 527 (2054)
++++++++..++..++++|.||+...+. .+ ..+.+.|++|+|+.+|++
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999999999984321 12 567889999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~ 607 (2054)
+++.+|+.|+++|+||+. ++++|..+.+.|++++|+.+++++++.+++.|+|+|.|++.+.+ +.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~---------------p~ 570 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN---------------PE 570 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---------------HH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC---------------hh
Confidence 999999999999999997 46689999999999999999999999999999999999986522 11
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHH
Q 000145 608 SKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686 (2054)
Q Consensus 608 V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~ 686 (2054)
... .. . ...|++++|+.++.++ +...+..|+++|.||+..+++.+..+++.|+++.|+.
T Consensus 571 ~~~-------------~~----~---~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~ 630 (810)
T 3now_A 571 VSF-------------SG----Q---RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY 630 (810)
T ss_dssp HHT-------------TT----H---HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhh-------------cc----h---hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 000 00 0 0124799999999866 4455678999999999977889999999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHh-cCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHh-
Q 000145 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL- 763 (2054)
Q Consensus 687 LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~-~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~- 763 (2054)
++.++++.+++.|+++|+||+.+ . ..+..+.+ .|.+++|+.++.+.+.+++.+|+++|+||+. ++...+.+++
T Consensus 631 LL~s~~~~Vq~~A~~~L~NLa~~--~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~ 706 (810)
T 3now_A 631 YLMEDHLYLTRAAAQCLCNLVMS--E--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706 (810)
T ss_dssp HHHSCCTTHHHHHHHHHHHHTTS--H--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHHHhCC--h--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999862 2 45555554 7899999999999999999999999999998 7888888888
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC-CCchhHHHHHHHHHHHhh
Q 000145 764 EDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD-MNGTDVADALEVVALLAR 841 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~-~~~~~~~~AL~ALa~La~ 841 (2054)
.|++++|++++.+++.++|+.|+|++.|++... +.....+...|++++|+++++..+ .+.+....|+++|.++-.
T Consensus 707 ~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999854 567778888999999999997542 355678888999988874
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-44 Score=472.46 Aligned_cols=689 Identities=16% Similarity=0.168 Sum_probs=522.4
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 127 IPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 127 Ip~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
+..|++++.+ .+.+-|+.|++.|..|+. ++.|.+.|+++|++..|..++++.+ ++.+.-.|+++|..+|.+
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~r-----e~aga~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAK-----EQTGAELLYKDHCIAKVASLTKVEK--DQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSS-----CHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeec-----cccchHHHHhCchHHHHHHHHhccC--chhHHHHHHHHHHHHHhc
Confidence 5678888876 488999999999999995 7899999999999999999999643 356899999999999999
Q ss_pred CCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh--hcCCCcch------hc------ccchHHHHHHHhccC
Q 000145 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML--AFGDSIPT------VI------DSGAVKALVQLVGQN 270 (2054)
Q Consensus 205 ~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~--~~~~~r~~------i~------~sGaL~~LL~LL~s~ 270 (2054)
+..|...+.+.-|+++++.++.+.++++...++.+++.+.. ...+.+.. +. -...+..|+.++.+
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 159 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD- 159 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc-
Confidence 99999999999999999999999999999999999998883 11111111 11 12345566666652
Q ss_pred CChhHHHHHHHHHHHHhhc-----cHHHHHHHHhcCCHHHHHHhhcCCch----hhhhhhhhhhhhhHHHHHHHHHhcCc
Q 000145 271 NDISVRASAADALEALSSK-----SIKAKKAVVAADGVPVLIGAIVAPSK----ECMQGQRGQALQGHATRALANIYGGM 341 (2054)
Q Consensus 271 ~d~~Vr~~Aa~aL~nLs~~-----s~e~Rk~I~eaggL~~LIeLL~s~s~----e~~q~~~~~~lqe~Al~ALanLsGgi 341 (2054)
..+...+++...++..+ ..+....+...+|+..|++....-.. ..++ .+.+ .|.++..+|++++
T Consensus 160 --~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~-~~~~-~r~~~~~~l~~~~--- 232 (810)
T 3now_A 160 --RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMD-ITGS-SSTIASVCLARIY--- 232 (810)
T ss_dssp --TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCC-CCTT-HHHHHHHHHHHHH---
T ss_pred --cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCC-CChh-HHHHHHHHHHHHH---
Confidence 22333344444444333 11222336667888888887755211 0011 1111 5556666665554
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-c
Q 000145 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY-G 420 (2054)
Q Consensus 342 s~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~ 420 (2054)
..+.++ ..++.|.+ .+..++...+...+.+ -+..++.+++++. +
T Consensus 233 -----------------------------~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~a~~alt~i~~g 277 (810)
T 3now_A 233 -----------------------------ENMYYD----EAKARFTD-QIDEYIKDKLLAPDME-SKVRVTVAITALLNG 277 (810)
T ss_dssp -----------------------------HTCCSH----HHHHHHHH-HHHHHHHHHHSSCCHH-HHHHHHHHHHHHHSS
T ss_pred -----------------------------HHhccc----hhHHHHHH-HHHHHHHHHhccCChH-hHHHHHHHHHHHhcC
Confidence 333222 11233332 4567888888777766 5789999999995 5
Q ss_pred ChhhhHHHh-hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHH
Q 000145 421 NIFLSQWVS-HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2054)
Q Consensus 421 n~~~~~~L~-~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2054)
.++....+. ..|+++.++.++.+.++.+|+.|++++.+++.+ +..+..+.+.| +|.|+.+++++++.+|..|+.+|+
T Consensus 278 ~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcC-cHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567777766 668999999999999999999999999998877 78888888865 599999999999999999999999
Q ss_pred HHhhhcc-chhhHHHhhCCC----chHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh
Q 000145 500 ILTEQVD-DSKWAITAAGGI----PPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 500 nLs~~s~-e~r~~I~~aGaI----p~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
+++.... +....+++.|++ +.|+++|.++ +++++++|+++|.+|+.+.+.....+.+.|++|.|+.+++++++
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 9975322 333344445554 4567778877 89999999999999998766666666678999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH---hhhhcccchHHHHHHhcc
Q 000145 573 KGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ---KGSAANKGLRSLVQVLNS 648 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~---~~l~~~GaI~~LV~LLks 648 (2054)
.+++.++++|.|++...+ .+.++.+.++.+..+.++... ...+..+.++ +.+.+.|+++.|+.++++
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~---------~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE---------HELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS---------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc---------cccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 999999999999998532 334445555555443322110 1112233444 456788999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH-HHHhcCChh
Q 000145 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM-SYIAEGDVK 727 (2054)
Q Consensus 649 ~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~-~I~~~gaV~ 727 (2054)
+++++|+.|+++|.||+. +++++..+++.|++++|+.+|+++++.+++.|++||.||+.+... .... .....|+++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p--~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP--EVSFSGQRSLDVIR 583 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHTTTHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh--hhhhcchhhhcHHH
Confidence 999999999999999997 788999999999999999999999999999999999999873221 1110 001246999
Q ss_pred hHHhhhhcC-CHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhh
Q 000145 728 PLIKLAKTS-SIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2054)
Q Consensus 728 ~Lv~LL~s~-d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~ 805 (2054)
+|+.+|+++ +...+.+|+++|.||+.. ++.+..+++.|+++.|+.++.++++.+|+.|+++|+||+.+. .....
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~ 659 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM 659 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH
Confidence 999999875 445566899999999985 577889999999999999999999999999999999999863 34444
Q ss_pred hhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHH
Q 000145 806 AQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIE 883 (2054)
Q Consensus 806 i~~-~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~ 883 (2054)
+.. .+.++.|+.++.+. +...+.+|..+|++++. +......+. ..++|+++|+.++.+++..+|+.|+.
T Consensus 660 ~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii-------~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKIL-------AIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHH-------TSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-------HHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 444 67899999999764 35669999999999996 322222221 12689999999999999999999999
Q ss_pred HHHHhhccC
Q 000145 884 ILSRLCGDQ 892 (2054)
Q Consensus 884 iL~~L~~~~ 892 (2054)
+|.|+....
T Consensus 731 aL~NL~~~s 739 (810)
T 3now_A 731 IILNMINAG 739 (810)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 999998743
No 3
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=9.9e-36 Score=378.34 Aligned_cols=506 Identities=20% Similarity=0.201 Sum_probs=419.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
.|++|.|+.+|+++++.++..|+.+|.+++.+++++..+... |+++.|+++|.+ ++++++..|+.+|.+++. +
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-----~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----C
Confidence 689999999999999999999999999999988888777755 899999999986 599999999999999996 4
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
+.++..+++.|++|.|+++|.+++ +.++..++++|.+++.+++.....+.+.|+++.|+.++.+++.+++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 241 ~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+++..+++.+..+.+.|+++.|+.+++.+.+...+..+..+|.+++. +++.+..+.+.|+++.|++++.+++.+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChH----
Confidence 999987777788888899999999999866666777788899999998 588899999999999999988766433
Q ss_pred hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000145 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk 400 (2054)
++..+..+|.+++.
T Consensus 243 -----~~~~a~~~L~~l~~------------------------------------------------------------- 256 (529)
T 1jdh_A 243 -----LVQNCLWTLRNLSD------------------------------------------------------------- 256 (529)
T ss_dssp -----HHHHHHHHHHHHHT-------------------------------------------------------------
T ss_pred -----HHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 44455555555432
Q ss_pred CCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 401 ~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
+.... ....++++.|+.++.+.+++++..++.+|.+++..+++.+..+.+.|+++.|+
T Consensus 257 --------------------~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 257 --------------------AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp --------------------TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred --------------------CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 11000 00125677888888888899999999999999988777888999999999999
Q ss_pred hhhcCC--ChhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 481 SLLGLS--SEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 481 ~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
+++... ++.++..++.+|+||+..+++ .+..+.+.|+++.|+++|.+++ +.++..++++|+|++.+ +..+..+
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 393 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHH
Confidence 999753 468999999999999885444 4668889999999999999885 69999999999999985 4456778
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhh
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~ 634 (2054)
.+.|+++.|+.+++++++++|..++|++.|....
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~---------------------------------------------- 427 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV---------------------------------------------- 427 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CB----------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh----------------------------------------------
Confidence 8899999999999998899999999988773200
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.|+ ..+++++.++.+|.+|+. +++++..+.+.|+++.|+.++.++++.++..|+++|++++. ..
T Consensus 428 -~~~----------~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~-- 491 (529)
T 1jdh_A 428 -EGV----------RMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 491 (529)
T ss_dssp -TTB----------CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SH--
T ss_pred -ccc----------cHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CH--
Confidence 000 123455678889999987 68888999999999999999999999999999999999985 23
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+..+.+.|++++|..++++++++++..|.++|.+|+
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 57778899999999999999999999999999999874
No 4
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.9e-35 Score=396.34 Aligned_cols=544 Identities=18% Similarity=0.202 Sum_probs=439.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~ 162 (2054)
..+++.++..|++++.+++..++..+... .+..+ ..|+++.|+++|.++++.+|+.|+.+|.+|+. ...
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-----~~~ 182 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEA 182 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-----SHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-----CCh
Confidence 35789999999999999999888888754 22233 37999999999999999999999999999996 345
Q ss_pred HHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
++..+++. |+++.|+++|..+. +..++..|+.+|.+++...+. ...+.+.|+++.|+.+|.++++.++..|+++|.
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56677644 89999999997553 466899999999999987655 577888899999999999999999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
+++..++..+..+.+.|+++.|+.++.+ .+..++..+..+|.+++..+++.+..+.+.|+++.|+.++.+++.+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~----- 333 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE----- 333 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH-----
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH-----
Confidence 9998777777778889999999999984 6778899999999999987788888888888888887766543311
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
T Consensus 334 -------------------------------------------------------------------------------- 333 (780)
T 2z6g_A 334 -------------------------------------------------------------------------------- 333 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHh
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~ 481 (2054)
..+..++.+|.+++....++..+...++++.|+.++.+.+..++..++.+|.+++..... .....+.++.|++
T Consensus 334 ----~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 334 ----KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQ 406 (780)
T ss_dssp ----HHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHH
Confidence 133444555566655556666777889999999999999999999999999999976432 2234578999999
Q ss_pred hhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-C-HHHHHHHHHHHHHHhcCChh---HHHHHHH
Q 000145 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-S-QKAREVAAHVLWILCCHSED---IRACVES 556 (2054)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s-~~Vre~AA~aL~nLa~~sd~---~r~~I~e 556 (2054)
++++.+..++..|+++|++|+.++++++..+.+.|+++.|+++|.+. + +.++..|+++|++|+..+.+ .+..+.+
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999997778888999999999999999863 3 59999999999999875433 4667788
Q ss_pred cCChHHHHHhhccCCh-hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 557 AGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~-evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
.++++.|+.++++++. .++..++++|+|++...+ . +..+.+
T Consensus 487 ~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------------------------------------~-~~~i~~ 528 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-------------------------------------N-HAPLRE 528 (780)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-------------------------------------H-HHHHHH
T ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-------------------------------------H-HHHHHH
Confidence 9999999999998775 999999999999974311 0 112345
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHH--HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALan--Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
.|+++.|+.++++++.+++..+++++.| +.. | ...+.++..++.+|++|+. ..
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~------------~----------~~~~~v~~~a~~aL~~La~--~~- 583 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------------G----------VRMEEIVEACTGALHILAR--DI- 583 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCST------------T----------CCHHHHHHHHHHHHHHHTT--SH-
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhc------------c----------cChHHHHHHHHHHHHHHhc--Ch-
Confidence 6789999999998888899988887776 211 1 1235678899999999986 33
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
.++..+.+.|++++|+.+|.+.++.++..|+.+|++|+.+++.+..+.+.|+++.|++++.+.++++|+.|+++|.+++
T Consensus 584 -~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 584 -HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp -HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 000145 794 KHFP 797 (2054)
Q Consensus 794 ~~~~ 797 (2054)
.+.+
T Consensus 663 ~~~~ 666 (780)
T 2z6g_A 663 EDKP 666 (780)
T ss_dssp TTSC
T ss_pred cCCh
Confidence 9765
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.6e-35 Score=373.23 Aligned_cols=508 Identities=18% Similarity=0.194 Sum_probs=417.2
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
...|+++.|+++|+++++.+|..|+.+|.+++. +..++..++.. |+++.|+++|.++. +..++..++++|++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-----~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 86 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-----CCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 456899999999999999999999999999996 34567677754 89999999997543 45689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++..++ ....+.+.|+++.|+.+|.++++.++..++++|++++..++..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 87 ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 164 (529)
T 1jdh_A 87 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 164 (529)
T ss_dssp HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHH
Confidence 998766 55778889999999999999999999999999999998777777778889999999999984 6678899999
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
.+|.+++..+++.+..+.+.|+++.|++++.+++.+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~-------------------------------------------- 200 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE-------------------------------------------- 200 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH--------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH--------------------------------------------
Confidence 999999987789999999889888888876543211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~L 440 (2054)
..+..+..+|.+++.++.++..+.+.++++.|+.+
T Consensus 201 ---------------------------------------------~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~l 235 (529)
T 1jdh_A 201 ---------------------------------------------KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235 (529)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 13334455566666666667777888999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCch
Q 000145 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2054)
Q Consensus 441 L~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~ 520 (2054)
+.+++++++..++.+|.+++...+. . ....+++|.|+++++++++.++..++++|++|+.++++++..+.+.|+++.
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~-~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATK-Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTT-C--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HhCCChHHHHHHHHHHHHHhcCChh-h--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 9999999999999999999987432 2 223588999999999999999999999999999977788999999999999
Q ss_pred HhhhhhcC--CHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEAG--SQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
|+++|.+. ++++++.|+++|+||+.++.. .+..+.+.|+++.|+.++++++ +.++..++++|.|++.+.+
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~---- 388 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 388 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence 99999763 489999999999999875432 5778888999999999999877 5899999999999975421
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~ 674 (2054)
. +..+.+.|+++.|+.+++++++++|..|+|++.|.+..
T Consensus 389 -------------~---------------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~------- 427 (529)
T 1jdh_A 389 -------------N---------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------- 427 (529)
T ss_dssp -------------G---------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CB-------
T ss_pred -------------h---------------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-------
Confidence 0 01234567899999999999999999999999984321
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000145 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~ 754 (2054)
.|+ ..+.++..++.+|++|+. .. .++..+.+.|++++|+.++.+++++++..++++|++|+.+
T Consensus 428 ---~~~----------~~~~i~~~~~~al~~L~~--~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 428 ---EGV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp ---TTB----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ---ccc----------cHHHHHHHHHHHHHHHhc--Cc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 111 124556778999999986 33 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
++.+..+.+.|+++.|.+++.+.++++++.|.++|.+|
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999987
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.4e-35 Score=395.22 Aligned_cols=563 Identities=19% Similarity=0.183 Sum_probs=443.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHH
Q 000145 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRL 119 (2054)
Q Consensus 40 ~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~ 119 (2054)
.+..+++.|...+ ...+..+++.|... .+..+. .|++|.|+.+|+++++.+|.+|+.+|.+|+.+.+++.
T Consensus 116 ~i~~lv~~L~~~~--~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 116 AHPTNVQRLAEPS--QMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ----------CCS--CHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cHHHHHHHhcCcc--HHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3567777786653 34455555555432 223343 5899999999999999999999999999999888888
Q ss_pred HHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000145 120 KVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2054)
Q Consensus 120 ~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~a 197 (2054)
.+... |+++.|+++|.+ ++++++..|+.+|.+|+. +..++..+.+.|+|+.|+++|.+++ ..++..|+++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-----~~~~~~~i~~~g~I~~Lv~lL~~~~---~~v~~~A~~a 257 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-----HREGLLAIFKSGGIPALVNMLGSPV---DSVLFHAITT 257 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHH
Confidence 77755 899999999987 599999999999999996 4567889999999999999998764 6789999999
Q ss_pred HHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHH
Q 000145 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2054)
Q Consensus 198 L~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~ 277 (2054)
|.|+|...+.....+.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++.|+.+++.+.....+.
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 337 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 99999988777788889999999999999999999999999999999777777788888999999999998666666777
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc
Q 000145 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2054)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~ 357 (2054)
.+..+|.+++. ++..+..+.+.|+++.|+.++.+++.. ++..+..+|.+++.
T Consensus 338 ~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~---------~~~~a~~~L~~L~~------------------ 389 (780)
T 2z6g_A 338 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---------LVQNCLWTLRNLSD------------------ 389 (780)
T ss_dssp HHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHH---------HHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchH---------HHHHHHHHHHHHhc------------------
Confidence 88999999998 578888999999999999988765432 34455555555432
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~L 437 (2054)
.... .....++++.|
T Consensus 390 ---------------------------------------------------------------~~~~--~~~~~~~i~~L 404 (780)
T 2z6g_A 390 ---------------------------------------------------------------AATK--QEGMEGLLGTL 404 (780)
T ss_dssp ---------------------------------------------------------------TCTT--CSCCHHHHHHH
T ss_pred ---------------------------------------------------------------cchh--hhhhhhHHHHH
Confidence 1000 00112466778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC-C-hhhhHHHHHHHHHHhhhccc---hhhHH
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-S-EQHQEYAVQLIAILTEQVDD---SKWAI 512 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d-~~Vr~~Aa~aL~nLs~~s~e---~r~~I 512 (2054)
+.++.+.+.+++..++.+|.+++..+++.+..+.+.|+++.|++++... + +.++..|+++|+||+..+.+ .+..+
T Consensus 405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 8888888899999999999999998778888899999999999999763 3 38999999999999875444 35678
Q ss_pred HhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 513 TAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
...|+++.|+++|.+++ +.++..++++|+||+.+ +..+..+.+.|+++.|+.++++++++++..++|++.|-.
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----- 558 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----- 558 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C-----
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch-----
Confidence 88999999999999886 59999999999999984 556678888999999999999888888887777655410
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
+ ..| ...+++++.++.+|.+|+. ++++
T Consensus 559 ---------~---------------------------------~~~----------~~~~~v~~~a~~aL~~La~-~~~~ 585 (780)
T 2z6g_A 559 ---------F---------------------------------VEG----------VRMEEIVEACTGALHILAR-DIHN 585 (780)
T ss_dssp ---------C---------------------------------STT----------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred ---------h---------------------------------hcc----------cChHHHHHHHHHHHHHHhc-Chhh
Confidence 0 000 0235678889999999987 7888
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
+..+.+.|++++|+++|.++++.++..|+.+|.+++. .. ..+..+.+.|++++|++++++.+.+++..|+++|.++
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~--~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999985 23 6788899999999999999999999999999999999
Q ss_pred hCChH--HHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 752 LSDPD--IAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 752 a~~~e--~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
+.++. .+..+ +++.+..++.+++..
T Consensus 662 ~~~~~~~~~~~l----~~~ll~~l~~~~~~~ 688 (780)
T 2z6g_A 662 SEDKPQDYKKRL----SVELTSSLFRTEPMT 688 (780)
T ss_dssp HTTSCTTHHHHH----HHHHHHHC-------
T ss_pred HcCChHhhhccc----cHHHHHHHHhCCCcc
Confidence 98654 22221 666667777665543
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=385.10 Aligned_cols=528 Identities=20% Similarity=0.195 Sum_probs=435.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
.|+++.|+.+|+++++.++..|+.+|.+++.+.+++..+... |+++.|+++|.+ ++++++..|+.+|.+|+. +
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-----~ 87 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 87 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-----S
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----C
Confidence 689999999999999999999999999999988888777755 889999999987 599999999999999996 4
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
..++..+++.|+++.|+++|.+++ ..++..++++|.|++...+.....+.+.|+++.|+.+|.++++.++..++.+|
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 241 ~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+++..+++.+..+.+.|+++.|+.++++......+..+..+|.+++. ++..|..+.+.|+++.|++++.+++..
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~---- 239 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHH----
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHH----
Confidence 999977777788888999999999999866667788899999999998 588899999999999999988765433
Q ss_pred hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000145 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk 400 (2054)
+++.++.+|.+++.
T Consensus 240 -----~~~~a~~~L~nL~~------------------------------------------------------------- 253 (644)
T 2z6h_A 240 -----LVQNCLWTLRNLSD------------------------------------------------------------- 253 (644)
T ss_dssp -----HHHHHHHHHHHHGG-------------------------------------------------------------
T ss_pred -----HHHHHHHHHHHHhh-------------------------------------------------------------
Confidence 45556666655542
Q ss_pred CCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 401 ~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
.... .....++++.|+.++.+.+.+++..++.+|.+++..+++++..+.+.|+++.|+
T Consensus 254 --------------------~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 254 --------------------AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp --------------------GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred --------------------cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 1000 000124677788888888899999999999999988778888899999999999
Q ss_pred hhhcCCC--hhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 481 SLLGLSS--EQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 481 ~LL~s~d--~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
+++...+ +.++..++++|+||+..+++ .+..+...|+++.|+++|.+++ +.++..++++|+||+.+ +..+..+
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i 390 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 390 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHH
Confidence 9998643 68999999999999875442 4556778899999999999874 79999999999999985 4456778
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhh
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~ 634 (2054)
.+.|+++.|+.+++++++++|..++|++.|-..
T Consensus 391 ~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~----------------------------------------------- 423 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF----------------------------------------------- 423 (644)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred HHcCCHHHHHHHHhccchhhhhHhhhccccchh-----------------------------------------------
Confidence 889999999999999888888888886655100
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
..|+ .++++++.++.+|.+|+. ++.++..+.+.|++++|++++.++++.++..|+.+|.+++. ..
T Consensus 424 ~~~~----------~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~-- 488 (644)
T 2z6h_A 424 VEGV----------RMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 488 (644)
T ss_dssp CCSS----------CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SH--
T ss_pred cccc----------cHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CH--
Confidence 0000 245678889999999998 67888899999999999999999999999999999999985 22
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHH--HHHHHhcCcHHHHHHHHcCCC
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDI--AAEVLLEDVVSALTRVLAEGT 778 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~--r~~Iv~~g~I~~LV~LL~s~~ 778 (2054)
..+..+.+.|++++|.+++++.+++++..|+.+|.+++.+... +..+ +++.+..++.+++
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH----HHHHHHHHSCCSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc----chHHHHHHHhCCC
Confidence 5777889999999999999999999999999999999876542 1221 3555666666554
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=377.07 Aligned_cols=510 Identities=18% Similarity=0.187 Sum_probs=423.8
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
...|+++.|+++|+++++.+|..|+.+|.+++.+ ..++..++.. |+++.|++.|.++. +..++..++.+|.+
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-----~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----EASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 83 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----TTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-----ChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 4669999999999999999999999999999973 3356666654 89999999998653 45689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++...+ ....+.+.|+++.|+.+|.++++.++..++++|.+++..++..+..+.+.|+++.|+.++++ .+..++..+.
T Consensus 84 Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 161 (644)
T ss_dssp HTTSHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HhcChh-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHHHH
Confidence 999866 55778888999999999999999999999999999997776777778889999999999985 4667888888
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
.+|.+++..+++.+..+.+.|+++.|++++.+++.
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--------------------------------------------- 196 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--------------------------------------------- 196 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---------------------------------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---------------------------------------------
Confidence 99999998678899999988888888887754321
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~L 440 (2054)
+..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 197 --------------------------------------------~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 197 --------------------------------------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 113445556666666666677778888999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCch
Q 000145 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2054)
Q Consensus 441 L~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~ 520 (2054)
+...+..++..++.+|.+++..... .....++++.|++++++++..++..++++|++|+..+++++..+.+.|+++.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 9999999999999999999976432 1233588999999999999999999999999999977788999999999999
Q ss_pred HhhhhhcC-C-HHHHHHHHHHHHHHhcCCh---hHHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEAG-S-QKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s~-s-~~Vre~AA~aL~nLa~~sd---~~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
|+++|.+. + +.++..|+++|+||+.+.. ..+..+.+.|+++.|+.+|++++ +.++..++++|.|++.+.+
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 99999874 3 8999999999999987433 35666778999999999999875 6899999999999975421
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH--HhhcChhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDIC 672 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan--Las~~~e~r 672 (2054)
.+ ..+.+.|+++.|+.++++++.++|..|+|++.+ +..
T Consensus 386 -------------~~---------------------~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~------ 425 (644)
T 2z6h_A 386 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------ 425 (644)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHTTC----------CC------
T ss_pred -------------HH---------------------HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc------
Confidence 01 123456789999999999999999999998776 221
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
| ..++.++..++.+|++|+. .. .++..+.+.|++++|+.+|.+.+++++..|+++|+|++
T Consensus 426 ------~----------~~~~~v~~~a~~aL~~La~--~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 426 ------G----------VRMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp ------S----------SCHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ------c----------ccHHHHHHHHHHHHHHHhc--CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 1245788899999999986 33 67778889999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
.+++.+..+.+.|+++.|+.++.+.++++|..|+++|.++..+.
T Consensus 486 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999865
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.1e-31 Score=343.67 Aligned_cols=415 Identities=16% Similarity=0.167 Sum_probs=347.1
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhccc-CccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhh
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~-s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.++-++..+.+++.+.|..|+..++++... .....+.+++.|+||.|+++|+. +++.+|..|+++|+||+.++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 478899999999999999999999986543 23345778899999999999975 4578999999999999998889999
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-----hHHHHHHHHHHHH
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-----evq~~AA~AL~nL 585 (2054)
.+++.|++|.|+++|.++++++++.|+++|+||+.+++..|..+.+.|++++|+.++++.+. ..++.++++|.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987653 4577888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHh
Q 000145 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 586 s~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLa 665 (2054)
+..... .... ....++++.|+.++++++++++..++++|.+|+
T Consensus 218 ~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSS-------------CCCH------------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccc-------------hhHH------------------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 754210 0000 012346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al 745 (2054)
....+....+.+.|+++.|+.++.++++.++..++++|+|++.+. +..+..+.+.|++++|+.+|.+++.+++..|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC---HHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 877777888889999999999999999999999999999998643 26777899999999999999999999999999
Q ss_pred HHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCC
Q 000145 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2054)
Q Consensus 746 ~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~ 824 (2054)
++|+|++. ++..+..+.+.|+++.|+.++.+++.++|..|+|+|+|++.+.. ......+.+.|++++|+.+|++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~--~~~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhcCCC-
Confidence 99999986 56677788899999999999999999999999999999998642 344556677899999999998654
Q ss_pred CchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
......++++|.++....+..... ..+....+..+.++.|..++.++++.++.+|..+|.+++...
T Consensus 415 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 415 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred -HHHHHHHHHHHHHHHHHhHhccch-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 456889999999887522111111 112222345678999999999999999999999999998743
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=6e-31 Score=338.05 Aligned_cols=416 Identities=16% Similarity=0.158 Sum_probs=347.2
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcc-cCccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~-~s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++..+.+++++.|..++..++++-. ........+++.|+||.|+++|+. +++.++..|+++|+|++.++++++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 357788999999999999999999988643 333445778899999999999974 567899999999999999888888
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-----hHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTK 584 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-----evq~~AA~AL~n 584 (2054)
..+.+.|++|.|+.+|.++++++++.|+++|+||+.+++..|..+.+.|++++|+.++.+.+. ..++.++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987553 467788888888
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
++..... .... ....++++.|+.++++++++++..++++|.++
T Consensus 236 l~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 236 LCRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHCCCTT-------------CCCH------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcccc-------------hhhH------------------------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 8754210 0000 01234689999999999999999999999999
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHH
Q 000145 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744 (2054)
Q Consensus 665 as~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~A 744 (2054)
+....+....+...|+++.|+.++.+.++.++..|+++|+|++.+. +..+..+.+.|++++|+.+|.+++++++.+|
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc---hHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 9977788888899999999999999999999999999999998643 2677789999999999999999999999999
Q ss_pred HHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC
Q 000145 745 VAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 745 l~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
+++|+|++. ++..+..+.+.|++++|+.++.+++.++|..|+|+|+|++.+.. ......+...|++++|+++|.+.+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCcCHHHHHHHhcCCC
Confidence 999999987 56667788899999999999999999999999999999998642 344556677899999999998654
Q ss_pred CCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 824 MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 824 ~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
......++.+|.++....+..... +.+....+..++++.|..++.++++.++.+|..+|.+++...
T Consensus 434 --~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 434 --TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHhHhccCh-HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 456888999999886422111110 112222345678999999999999999999999999998743
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=9.9e-30 Score=325.48 Aligned_cols=397 Identities=14% Similarity=0.152 Sum_probs=343.7
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhh--hHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccchhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFL--SQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~--~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
+-++..+.+.+.+ .|..++.++..+.....+ .+.+.+.|+++.|+.+|..+ ++++|..|+++|.+++..+++.+..
T Consensus 60 ~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5567777777765 889999999988543322 35677889999999999754 5899999999999999988889999
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCC-----HHHHHHHHHHHHHHh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS-----QKAREVAAHVLWILC 544 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s-----~~Vre~AA~aL~nLa 544 (2054)
+++.|+||.|+++|++++..+++.|+++|+||+.++++.|..+.+.|++++|+.+|.+++ ...++.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977889999999999999999997653 467889999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
.+.+.........++++.|+.++++++++++..++++|.+++... +.++++.|++++.+.+..++..+.+++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 866554444445788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
++++.. .+.....+.+.|+++.|+.+++++++++++.|+++|.||+.++++.+..+.+.|+++.|+.++++++..+|
T Consensus 299 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 299 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHhhcC---CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------ChHHHHHHHhcCcHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-------~~e~r~~Iv~~g~I~~ 769 (2054)
..|+++|.|++..... .++..+.+.|++++|+++|++.+++++..++++|.|+.. ....+..+.+.|++..
T Consensus 376 ~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence 9999999999873333 567789999999999999999999999999999999953 1234556788999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
|..+..+.+.++++.|...|.+....
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999887653
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=1e-28 Score=315.90 Aligned_cols=403 Identities=15% Similarity=0.126 Sum_probs=350.5
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCc-cchhhhhccccHHHHHhhhcCCC-hhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~-e~r~~Ive~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++.++.++++++|..|+.+|.++..... .....+++.|++|.|++++++++ +.++..|+++|++++..+++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468899999999999999999999999966544 56777888999999999999887 8999999999999999778899
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh-ccCChhHHHHHHHHHHHHHHh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nLs~~ 588 (2054)
..+.+.|+++.|+.+|.++++.+++.|+++|++|+.+++..+..+.+.|+++.|+.++ .+.++.++..++++|.+++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888899999999999999999 678899999999999999976
Q ss_pred h-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHH
Q 000145 589 A-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2054)
Q Consensus 589 ~-------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~AL 661 (2054)
. ..++++.|++++.+.++.++..++++|++++.. .+.....+.+.|+++.|+.+++++++.++..|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 3 146899999999999999999999999998743 222233456789999999999999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 662 anLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
.+|+.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++.+.+ .....+.+.|++++|+.+|.+.+.++
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK---DQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998888888999999999999999998 99999999999999997322 46667888999999999999999999
Q ss_pred HHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--------chhHhhhhhhhh
Q 000145 741 AETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCRF 810 (2054)
Q Consensus 741 re~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--------~e~i~~~i~~~g 810 (2054)
+..|+++|+|++. +++.+..+.+.|++++|+.++.+.+++++..++++|.+|+...+. ...+...+...+
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 467 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAE 467 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCC
Confidence 9999999999986 477888899999999999999999999999999999999875321 112455566688
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 811 VVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 811 ~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
++.++..+..+.+ ......|...+..+...
T Consensus 468 ~~~~l~~L~~~~~--~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 468 GLEKIENLQSHDN--NEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHGGGCSS--HHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHCCC
Confidence 8999999876543 44577888888776643
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=5.3e-29 Score=320.00 Aligned_cols=396 Identities=14% Similarity=0.150 Sum_probs=343.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
+-++..+.+.+.+ .+..++..+..+.... .....+.+.|+++.|+.++.. .++++|..|+++|.+++..+.+....
T Consensus 79 ~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566677776654 8889999998875433 224567888999999999975 45889999999999999988888899
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-----CHHHHHHHHHHHHHHh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-----s~~Vre~AA~aL~nLa 544 (2054)
+++.|+||.|+.++.+++..+++.|+++|+||+.+++++|..+.+.|++++|+.+|..+ ....++.++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997889999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
.+.+.........+++|.|+.++++++++++..++|+|.+++... +.++++.|+++|.+.+..++..+..++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 876555555455788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
++++.. .+.....+.+.|+++.|+.++++++++++..|+++|.||+.++++.+..+.+.|+++.|+.++.+++..++
T Consensus 318 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 318 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------ChHHHHHHHhcCcHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-------~~e~r~~Iv~~g~I~~ 769 (2054)
..|+++|+|++.+... .+...+++.|++++|+++|++.+++++..++.+|.|+.. ....+..+.+.|++..
T Consensus 395 ~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 9999999999873332 566788999999999999999999999999999999953 2234556788999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
|..+..+.+.++++.|..+|.+...
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987754
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.7e-29 Score=322.57 Aligned_cols=361 Identities=17% Similarity=0.196 Sum_probs=303.3
Q ss_pred hhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccc
Q 000145 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDD 507 (2054)
Q Consensus 429 ~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e 507 (2054)
+..+.++.|+.+|.++++++|..|+.+|.+++..+.+++..|++.|+||.|+++|++++..+|+.|+++|+||+.+ +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3457899999999999999999999999999998789999999999999999999999999999999999999985 588
Q ss_pred hhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc------------------
Q 000145 508 SKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------------------ 568 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk------------------ 568 (2054)
++..|.+.|++++|+++|.+ ++.++++.++++|++|+. .+.++..+.+ ++++.|+.++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999998 588999999999999998 5667777774 67999999762
Q ss_pred cCChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhcchH-----H
Q 000145 569 SGGPKGQDASAMALTKLIRAAD---------SATINQLLALLLG------DSPSSKAHVIKVLGHVLTMALQED-----L 628 (2054)
Q Consensus 569 S~~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~------~~~~V~~~a~~AL~~La~~~~~~d-----~ 628 (2054)
+.+++++++++++|.||+.+.+ .+.++.|+.+++. .+....+.+..+|++|+....... .
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2357999999999999986531 3567899999874 345677889999999875421100 0
Q ss_pred H-----------------HhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcC----hhhhhhhhhCCCHHHHHH
Q 000145 629 V-----------------QKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMR----QDICGSLATDEIVNPCMR 686 (2054)
Q Consensus 629 ~-----------------~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~----~e~r~~Iv~~g~V~~Lv~ 686 (2054)
. ...+...++++.|+.+++. .++++++.|+++|.||+.++ ..++..+.+.++++.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 0 0112234567788999964 58999999999999998754 234455566799999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC--------CHHHHHHHHHHHHHhhC-ChHH
Q 000145 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--------SIDAAETAVAALANLLS-DPDI 757 (2054)
Q Consensus 687 LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~--------d~~Vre~Al~AL~NLa~-~~e~ 757 (2054)
+|+++++.+++.|+++|.||+.. . .++..+ ..|++++|+.+|.+. +.+++..|+++|+||+. +++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~--~--~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~ 437 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVD--A--RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTT--C--SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCC--h--hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999973 2 455444 789999999999876 46888899999999965 7889
Q ss_pred HHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcC
Q 000145 758 AAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 758 r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~ 796 (2054)
++.+.+.|++++|+.++.++ .+.+++.|+++|++|+.+.
T Consensus 438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99999999999999999986 8999999999999999864
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=6.2e-29 Score=314.06 Aligned_cols=358 Identities=15% Similarity=0.177 Sum_probs=300.3
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.++.++.++.++++++|..|+.+|.+++.+++..+..+.+.|+||.|+++|+++++.++..|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47889999999999999999999999998877778899999999999999999999999999999999999778999999
Q ss_pred HhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh--------ccC--------ChhHH
Q 000145 513 TAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--------KSG--------GPKGQ 575 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL--------kS~--------~~evq 575 (2054)
.+.|++|+|+++|. ++++++++.++++|+||+.+ +..+..+.+ |+++.|+.++ +++ +++++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999987 678888888 9999999999 332 45667
Q ss_pred HHHHHHHHHHHHhh-------ch-hhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhc----chH----------
Q 000145 576 DASAMALTKLIRAA-------DS-ATINQLLALLLG------DSPSSKAHVIKVLGHVLTMAL----QED---------- 627 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~-------e~-~~Ip~Lv~LL~~------~~~~V~~~a~~AL~~La~~~~----~~d---------- 627 (2054)
+.++|+|.||+.++ +. ++++.|+++++. .+..+...+..+|++++.... ...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999763 23 889999999985 345567777778888752110 000
Q ss_pred ---------------------------------HHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChh---
Q 000145 628 ---------------------------------LVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQD--- 670 (2054)
Q Consensus 628 ---------------------------------~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e--- 670 (2054)
...+.+...|+++.|+.+++++ ++++++.|+++|.||+.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0011244567889999999765 799999999999999975433
Q ss_pred -h-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC------HHHHH
Q 000145 671 -I-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------IDAAE 742 (2054)
Q Consensus 671 -~-r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d------~~Vre 742 (2054)
+ +..+.+.|+++.|+++|+++++.+++.|+++|.|++. .. ..+. ++..|++++|+++|.+.+ .++..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--CH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334468999999999999999999999999999987 22 4444 445689999999999864 46888
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhhcCC
Q 000145 743 TAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 743 ~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~~~~ 797 (2054)
.++++|+|+.. +++.+..+.+.|++++|++++.++ ++++++.|+++|.++..+++
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999975 778888899999999999999999 99999999999999998754
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=7.3e-28 Score=308.56 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=348.2
Q ss_pred cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC-ccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccch
Q 000145 431 AEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2054)
Q Consensus 431 ~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s-~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~ 508 (2054)
.+.++.++..+.++++++|..|+.+|.++.... ......+++.|++|.|+++++++ ++.++..|+++|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 357899999999999999999999999986542 34456777889999999999987 8899999999999999976778
Q ss_pred hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 509 r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
+..+...|+++.|+++|.++++.+++.|+++|++|+.+++..+..+.+.|+++.|+.++++.++.++..++++|.+++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999998888899988999999999999999999999999999999965
Q ss_pred h--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHH
Q 000145 589 A--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2054)
Q Consensus 589 ~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~A 660 (2054)
. ..++++.|++++.++++.++..++++|++++... ++. ...+.+.|+++.|+.+++++++.++..|+++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 3 1468999999999999999999999999987432 222 2334567899999999999999999999999
Q ss_pred HHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 661 LanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
|.+++.++++....+.+.|+++.|+.+|.++++.++..|+++|++++.+.+ .....+.+.|++++|+.+|.+++.++
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---EQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998778888888899999999999999999999999999999997432 45556778999999999999999999
Q ss_pred HHHHHHHHHHhhC--Ch--HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--------chhHhhhhhh
Q 000145 741 AETAVAALANLLS--DP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQC 808 (2054)
Q Consensus 741 re~Al~AL~NLa~--~~--e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--------~e~i~~~i~~ 808 (2054)
+..|+++|+|++. .+ +....+.+.|++++|+.++.+.+++++..|+++|.+++...+. ...+...+..
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 9999999999976 34 6777888999999999999999999999999999999875321 1224445666
Q ss_pred hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 809 ~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
.|++.+|..++.+.+ ...+..|..++..+-..
T Consensus 480 ~g~~~~L~~L~~~~~--~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 480 AGGMEKIFNCQQNEN--DKIYEKAYKIIETYFGE 511 (530)
T ss_dssp TTHHHHHHGGGGCSC--HHHHHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHCCc
Confidence 889999999886543 44577888888877643
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=4.2e-28 Score=311.56 Aligned_cols=375 Identities=13% Similarity=0.130 Sum_probs=318.6
Q ss_pred CcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 383 DEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 383 ~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
...|+...+ +.|+.+|++.+. .+|..++.+|.+++. +..++..+.+.|+++.|+.+|.+++.++|..|+.+|.+++.
T Consensus 42 ~~~~~~~~i-~~LV~~L~s~~~-~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 42 PPNWRQPEL-PEVIAMLGFRLD-AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCCH-HHHHHHTTCSCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CCCcccccH-HHHHHHHCCCCH-HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 344555444 888999988765 499999999999974 77889999999999999999999999999999999999998
Q ss_pred c-CccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-------------
Q 000145 462 R-EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE------------- 526 (2054)
Q Consensus 462 ~-s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~------------- 526 (2054)
. +.+++..|++.||||.|+++|++ .+..+++.++.+|+||+. +++++..|.+ +++++|+++|.
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 57899999999999999999997 577899999999999998 6889999985 57999999872
Q ss_pred -----cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-CChHHHHHhhcc------CChhHHHHHHHHHHHHHHhhc----
Q 000145 527 -----AGSQKAREVAAHVLWILCCHSEDIRACVESA-GAVPAFLWLLKS------GGPKGQDASAMALTKLIRAAD---- 590 (2054)
Q Consensus 527 -----s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~-GaI~aLV~LLkS------~~~evq~~AA~AL~nLs~~~e---- 590 (2054)
..+++++++|+++|+||+.++++.|..+.+. |.++.|+.++++ .+...+++|+++|.||+...+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 2257999999999999999888878888875 556799999875 466789999999999986521
Q ss_pred -----------------------------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhh-cchHHHHhhhhcccch
Q 000145 591 -----------------------------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGL 639 (2054)
Q Consensus 591 -----------------------------~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~-~~~d~~~~~l~~~GaI 639 (2054)
.++++.|+.+|+ ..++.+++.+++||.+|+... ......+..+.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 134678899996 567889999999999997532 1223345556778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhhCCCC
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--------TQMVATQSARALGALSRPTK 711 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--------s~~vr~~AA~AL~nLs~s~~ 711 (2054)
+.|+.++.++++++++.|+++|.||+. ++.++..+ ..|+++.|+++|.++ ++.++..|+++|+||....+
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999998 56666655 789999999999876 46788999999999986433
Q ss_pred cccchhHHHHhcCChhhHHhhhhcC--CHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 000145 712 TKTTNKMSYIAEGDVKPLIKLAKTS--SIDAAETAVAALANLLSDPDIAAEVLLEDV 766 (2054)
Q Consensus 712 ~~d~~r~~I~~~gaV~~Lv~LL~s~--d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~ 766 (2054)
.++..+.+.|++++|+.++.++ ++.+++.|+++|+||..+++.|..+.++|.
T Consensus 436 ---~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 436 ---EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp ---HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred ---HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 6888999999999999999986 899999999999999999999999988664
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=310.09 Aligned_cols=363 Identities=17% Similarity=0.143 Sum_probs=298.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC------------CHHHHHHHHHHHHHhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA------------TADVREYLILSLTKLC 460 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss------------d~evq~~Aa~AL~~Ls 460 (2054)
+.|+..+.+.+.+ ...+.|..+..++..+..+.+.|+++.|++++... +++.|.+|+++|.|++
T Consensus 35 ~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 35 YSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ----------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 3444445554443 36778888888888888999999999999999863 3699999999999999
Q ss_pred ccCccchhhhhccccH----------HHHHhhhcCCC--hh-----h-------hHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 461 RREVGIWEAIGKREGI----------QLLISLLGLSS--EQ-----H-------QEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 461 ~~s~e~r~~Ive~ggI----------p~LV~LL~s~d--~~-----V-------r~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
..+++......+.+.+ +.+++++.+.. .+ + +..|+++|.|++. ++++|..+.+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G 189 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELG 189 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Confidence 9888888777777776 55667676542 12 3 3389999999988 589999999999
Q ss_pred CCchHhhhhhc-----------CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCChHHHHHhhccCChhHHHHHHHHHHH
Q 000145 517 GIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2054)
Q Consensus 517 aIp~LV~LL~s-----------~s~~Vre~AA~aL~nLa~~sd~~r~~I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~n 584 (2054)
++++|+.+|.. .++.+++.|+++|.||+.+++..+..+.. .|+||.|+.+|+++++++++.++++|.|
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999952 24678999999999999988878877754 5569999999999999999999999999
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLAD 663 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALan 663 (2054)
|+... ++ ..+..+.+.|+++.|+.++ +++++++++.|+.+|+|
T Consensus 270 Ls~~~---------------~~---------------------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 270 LSWRA---------------DV---------------------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HTSSC---------------CH---------------------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HhcCC---------------CH---------------------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 97421 11 1123355789999999974 66789999999999999
Q ss_pred HhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhhC--CCCcccchhHHHHhcCChhhHHhhhhcC
Q 000145 664 LFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALSR--PTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2054)
Q Consensus 664 Las~~~e~r~~Iv-~~g~V~~Lv~LL~dgs~----~vr~~AA~AL~nLs~--s~~~~d~~r~~I~~~gaV~~Lv~LL~s~ 736 (2054)
|+.++++++..+. ..|+++.|+++|+++++ .+++.|+++|.||+. ...+ .++..+.+.|++++|+.+|.++
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~--~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE--DHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHSSCS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH--HHHHHHHHcccHHHHHHHHcCC
Confidence 9986677888887 78999999999987665 489999999999985 1222 6888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC
Q 000145 737 SIDAAETAVAALANLL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 737 d~~Vre~Al~AL~NLa-~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~ 798 (2054)
+.+++++|+++|+||+ .+++.+..+.+.|++++|+.++.++++++++.|+++|.||+.+.|.
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 9999999999999999 4889999999999999999999999999999999999999998653
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=8.1e-28 Score=299.02 Aligned_cols=400 Identities=14% Similarity=0.107 Sum_probs=340.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcc--cCccchhhhhcc-ccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccch
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCR--REVGIWEAIGKR-EGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~--~s~e~r~~Ive~-ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~ 508 (2054)
.++.++..+.+++++++..|+..|+++.. .++.. ..+.+. |+++.|+++++++ ++.+|..++++|.+++.++++.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36788999999999999999999999754 22333 445566 8999999999988 8899999999999999866677
Q ss_pred hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc-CChhHHHHHHHHHHHHHH
Q 000145 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 509 r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS-~~~evq~~AA~AL~nLs~ 587 (2054)
+..+.+.|+++.|+++|+++++.+|+.|+++|++++.+++..+..+.+.|+++.|+.++++ .++.++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999888888988899999999999995 789999999999999996
Q ss_pred hh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHH
Q 000145 588 AA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659 (2054)
Q Consensus 588 ~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ 659 (2054)
.. ..+.++.|+++++++++.++..+.++|++++...+ + ....+...|+++.|+.++++++++++..|++
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN--D-KIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH--H-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc--H-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 53 14689999999999999999999999999875321 2 2233556789999999999999999999999
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHH
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~ 739 (2054)
+|.+++.++++.+..+.+.|+++.|+++++++++.++..|+++|++++.+.+ .....+.+.|+++.|+.++.+++++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR---AQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999998777777888889999999999999999999999999999986432 4555678889999999999999999
Q ss_pred HHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCc--------hhHhhhhhhh
Q 000145 740 AAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVG--------DVLKGNAQCR 809 (2054)
Q Consensus 740 Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~--------e~i~~~i~~~ 809 (2054)
++..|+++|+|++. +++....+.+.|+++.|++++.+.+++++..|+++|.+++...+.. +.+...+...
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 99999999999985 5677777888999999999999999999999999999998753211 1234555567
Q ss_pred hhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 810 g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
|++++|..++.+.+ ...+..|..++..+-.
T Consensus 414 g~~~~l~~l~~~~~--~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 414 YGLDKIEFLQSHEN--QEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HCHHHHHHHHCHHH--HHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHCC
Confidence 88899988886543 3457788888887764
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1e-27 Score=306.71 Aligned_cols=397 Identities=17% Similarity=0.195 Sum_probs=345.9
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhccCC-HHHHHHHHHHHHHhcccCccchh
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWE 468 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~ssd-~evq~~Aa~AL~~Ls~~s~e~r~ 468 (2054)
.+.|+..+.+.+. .++..++.+|.++.... .....+...++++.|+.++.+++ +.+|..|+.+|.+++..+++.+.
T Consensus 76 l~~lv~~L~s~~~-~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDN-NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3677778877765 48999999999995432 45567788899999999999887 99999999999999998788888
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCC
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
.+.+.|+++.|+.+++++++.++..|+++|++|+..++..+..+...|++++|+.+| .+.++.++..++++|.+|+.+.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987777889999999999999999 5679999999999999999864
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.... ....++++.|+.++++++++++..++++|.+++... +.++++.|+++|.+.++.++..+.++|+++
T Consensus 235 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 235 PQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 33332 334899999999999999999999999999998653 246899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
+... +.....+.+.|+++.|+.+++++ ++.++..|+++|.||+.++++....+.+.|+++.|+.++.++++.++..
T Consensus 314 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 314 VTGD---DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp TTSC---HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HcCC---HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 7532 22334456789999999999999 9999999999999999878888888999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh------------HHHHHHHhcCc
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP------------DIAAEVLLEDV 766 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~------------e~r~~Iv~~g~ 766 (2054)
|+++|++++..... ..+..+.+.|++++|+.+|.+.+++++..++.+|.||.... .....+.+.|+
T Consensus 391 a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 391 AAWAISNATSGGSH--DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 99999999973222 56777889999999999999999999999999999997532 24667788999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+..|..+..+.++++++.|.+++.++...
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998864
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=2.4e-27 Score=303.75 Aligned_cols=402 Identities=15% Similarity=0.142 Sum_probs=345.7
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccch
Q 000145 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2054)
Q Consensus 391 Ie~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r 467 (2054)
..+.|+..+++.+. .++..++.+|.++... ......+...++++.|+.++.+. ++.+|..|+.+|.+++..+++.+
T Consensus 88 ~i~~lv~~L~s~~~-~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDM-QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCSSH-HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34778888887765 4899999999999653 23345677789999999999997 89999999999999999877788
Q ss_pred hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
..+++.|+++.|+++++++++.++..|+++|++++..+++.+..+...|+++.|+++|.+.++.++..++++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999999999876788888889999999999999999999999999999999765
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.........++++.|+.+++++++.++..++++|.+++... +.++++.|++++.+.++.++..+.++|+++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 233334445899999999999999999999999999998652 247899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~A 699 (2054)
+... +.....+.+.|+++.|+.+++++++.++..|+++|.+++.++++....+++.|+++.|+.+|.++++.++..|
T Consensus 327 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 327 VTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp TTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HcCC---HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 7432 2223335567899999999999999999999999999998778888888899999999999999999999999
Q ss_pred HHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH------------HHHHHHhcCcH
Q 000145 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLEDVV 767 (2054)
Q Consensus 700 A~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e------------~r~~Iv~~g~I 767 (2054)
+++|++++......+.....+.+.|++++|+.++.+.++.++..++++|.++....+ .+..+.+.|++
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 999999987221101355577889999999999999999999999999999976322 34567889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 768 SALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 768 ~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+.|..++.+.++.+++.|..+|.++....
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999998754
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=2.2e-27 Score=295.13 Aligned_cols=396 Identities=15% Similarity=0.151 Sum_probs=337.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhc---ChhhhHHHhhc-chHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccch
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHA-EAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~---n~~~~~~L~~~-g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r 467 (2054)
+.|+..+++.+. .+|..++.+|..+.. ++.. +.+... +.++.|+.++.++ ++++|..++.+|.+++..+++..
T Consensus 23 ~~l~~~l~s~~~-~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 23 SDMIEMIFSKSP-EQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp HHHHHHHHSSCH-HHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 667777776655 489999999999743 3343 344555 8999999999998 89999999999999998766777
Q ss_pred hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcC
Q 000145 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~ 546 (2054)
..+.+.|++|.|+++++++++.+|+.|+++|++++..+++.+..+.+.|+++.|+++|.+ .+..++..++++|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 778888999999999999999999999999999999767788888999999999999996 6899999999999999975
Q ss_pred C-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 547 S-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 547 s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
. +..+..+. .++++.|+.+++++++.++..++++|.+++... +.+.++.|++++.+.++.++..+.++|+
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4 22222222 789999999999999999999999999998652 2468999999999999999999999999
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
+++... +.....+.+.|+++.|+.+++++++.+|..|+++|.+++.++++....+.+.|+++.|+++++++++.+|.
T Consensus 260 ~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 260 NIVTGD---DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHTTSC---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHhhCC---hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 987532 22233355678999999999999999999999999999987888888888899999999999999999999
Q ss_pred HHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH------------HHHHHHhcC
Q 000145 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLED 765 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e------------~r~~Iv~~g 765 (2054)
.|+++|++++..... .....+.+.|++++|+.++++.+.+++..|+++|.+++...+ ....+.+.|
T Consensus 337 ~a~~~L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 414 (450)
T 2jdq_A 337 EAAWAITNATSGGSA--EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414 (450)
T ss_dssp HHHHHHHHHHHHCCH--HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcC
Confidence 999999999863222 455567788999999999999999999999999999986332 245677889
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 766 VVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 766 ~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+++.|..++.+.+.++++.|..+|.++..+.
T Consensus 415 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 415 GLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999889999999999999998653
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3.4e-27 Score=298.16 Aligned_cols=361 Identities=16% Similarity=0.179 Sum_probs=299.1
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.+|.|+++|+++++.+|..|+++|++++.+++..+..+.+.|++|.|+++|+++++++++.|+++|.||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998777788899999999999999999999999999999999999889999999
Q ss_pred HHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhc--------CC--------CcchHHH
Q 000145 555 ESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD------SATINQLLALLL--------GD--------SPSSKAH 611 (2054)
Q Consensus 555 ~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~--------~~--------~~~V~~~ 611 (2054)
.+.|++|.|+.+|+ ++++++++.++|+|+|++.+++ .+++|+|++++. +. ++.+...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 99999999999999 8899999999999999997632 278999999993 22 3445668
Q ss_pred HHHHHHHHHhhhcchHHHHhhhhcc-cchHHHHHHhcc------CCHHHHHHHHHHHHHHhhc-----------------
Q 000145 612 VIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNS------SNEENQEYAASVLADLFSM----------------- 667 (2054)
Q Consensus 612 a~~AL~~La~~~~~~d~~~~~l~~~-GaI~~LV~LLks------~s~evre~Aa~ALanLas~----------------- 667 (2054)
+.++|++|+.. ++ .+..+.+. |+++.|+.++++ .+.+++++++++|.||+..
T Consensus 163 a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 163 ATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 99999998753 33 34456666 999999999986 4567899999999999731
Q ss_pred ---------------------------------ChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcc
Q 000145 668 ---------------------------------RQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 668 ---------------------------------~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+++....+++.|+++.|+.+|++. ++.+++.|+++|.||+.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 112234456678899999999764 6899999999999999744321
Q ss_pred c-ch-hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCC------HHHHHHH
Q 000145 714 T-TN-KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT------SEGKKNA 785 (2054)
Q Consensus 714 d-~~-r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~------~evr~~A 785 (2054)
. .. +..+.+.|++++|+++|.+++.+++.+|+++|.||+.+++.+..+. .+++++|+++|..++ +++...+
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 0 12 3344578999999999999999999999999999999888877665 479999999999874 4788899
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~ 844 (2054)
+++|.|+.... ......+.+.|++++|++++.++ .......+|...|.++...++
T Consensus 398 l~~l~ni~~~~---~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 398 CYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcchh
Confidence 99999998765 45667777899999999999876 234568889888888775443
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=296.99 Aligned_cols=391 Identities=19% Similarity=0.171 Sum_probs=290.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-----------ChhHHHHHHHHHHHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----------DISVRASAADALEAL 286 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~-----------d~~Vr~~Aa~aL~nL 286 (2054)
++.++..+.+.+++ ...+.|..+. .+++.|..+.+.|++|.|+++|.... +.+++..|+++|.|+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 55566666655544 2666777777 45567778899999999999998532 268999999999999
Q ss_pred hhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHH
Q 000145 287 SSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIG 366 (2054)
Q Consensus 287 s~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~Lg 366 (2054)
..++++..+...+.+.++.|-. +.+ ++.. +.++++++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~-~~~----------------~~~~---------------~~~~~~~~~~--------- 148 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQ-IRA----------------YCET---------------CWEWQEAHEP--------- 148 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHH-HHH----------------HHHH---------------HHHHHTTTSS---------
T ss_pred HccCcchhHHHHHHHHHHHHHH-hhh----------------hhHH---------------HHHHHHhhcc---------
Confidence 9986666655554444433321 100 0000 0011111000
Q ss_pred HHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc---
Q 000145 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM--- 443 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s--- 443 (2054)
+.+.++..+.. . -+..+-.|+.+|++++.++.+++.+.+.|++++|+.++..
T Consensus 149 -----------~~~~~~~~~~~-------------~-~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~ 203 (458)
T 3nmz_A 149 -----------GMDQDKNPMPA-------------P-VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE 203 (458)
T ss_dssp -----------SSCCCSCC--C-------------C-CTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred -----------ccccccCCccc-------------h-hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhc
Confidence 00000000000 0 0013347889999999899999999999999999999952
Q ss_pred --------CCHHHHHHHHHHHHHhcccCccchhhhhcccc-HHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccchhhHHH
Q 000145 444 --------ATADVREYLILSLTKLCRREVGIWEAIGKREG-IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAIT 513 (2054)
Q Consensus 444 --------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg-Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e~r~~I~ 513 (2054)
.++.+|++|+++|.+++.+++.++..+...+| ||.|+++|+++++++++.|+++|+||+.. ++++|..+.
T Consensus 204 ~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~ 283 (458)
T 3nmz_A 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 283 (458)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23678999999999999986667777765555 99999999999999999999999999984 467899999
Q ss_pred hhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCCh----hHHHHHHHHHHHHHH
Q 000145 514 AAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIR 587 (2054)
Q Consensus 514 ~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~ 587 (2054)
+.|++++|+++| .++++.+++.++.+|+||+.+.++++..+. ..|+++.|+.+++++++ ++++.++++|.|++.
T Consensus 284 ~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999975 567899999999999999986666676666 79999999999988765 489999999999875
Q ss_pred hhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 588 AADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 588 ~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
.. ...+ ..+..+.+.|+++.|+.++++++.++++.|+++|+||+..
T Consensus 364 ~~---------------------------------a~~~-~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 364 LI---------------------------------ATNE-DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp HH---------------------------------TTCH-HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred cc---------------------------------cCCH-HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 20 0001 1233356788999999999999999999999999999977
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
+++.+..+.+.|++++|+.+++++++.+++.|+++|.||+..++.
T Consensus 410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 899999999999999999999999999999999999999986655
No 25
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=279.36 Aligned_cols=499 Identities=12% Similarity=0.065 Sum_probs=342.9
Q ss_pred HHHHHHHhh-cChhhhHH-HhhcchHHHHHHHhccCC-HHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCC
Q 000145 411 VLEAMASLY-GNIFLSQW-VSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS 487 (2054)
Q Consensus 411 Aa~AL~~L~-~n~~~~~~-L~~~g~I~~LI~LL~ssd-~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d 487 (2054)
+..++..++ --+++... +...+..+.+...+.+.. ..+...+...|...|.+ ...|..| ..++++.|.+++++
T Consensus 232 ~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~~-- 307 (778)
T 3opb_A 232 IVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLNV-- 307 (778)
T ss_dssp HHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTTS--
T ss_pred HHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhcc--
Confidence 334444442 23444444 444566777887775544 44444555555555555 5667777 56888999999875
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL 567 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL 567 (2054)
+.+|..|+.+|++|..........+. ...+.+.+.|.+++.+-+.+|+++|.+|+.+.+....+..+.++++.|+.++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHH
Confidence 58999999999999874433222221 1345566677777767799999999999997666656666677899999999
Q ss_pred cc-CChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH
Q 000145 568 KS-GGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2054)
Q Consensus 568 kS-~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~ 641 (2054)
++ .+..+.+.++.+|.|++...+ ...+..|.++.+...++...... . +.......+..++.+.+.|+++.
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~-~---~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA-E---KAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCT-H---HHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc-c---ccchHHHHHHHHHHHHHCcCHHH
Confidence 95 788999999999999998643 12333444443322121111000 0 00111112334566889999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH---HHHHHHHHHHHhhCCCCcccchhH
Q 000145 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM---VATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~---vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
|+.+++++++.+|+.++++|.+|+. ++++|..++++|++++|+.++.++++. +|..|++||.++..+.++ ....
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np--~~~f 538 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP--GLIF 538 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH--HHHS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH--HHHc
Confidence 9999999999999999999999987 799999999999999999999988765 899999999999963322 1110
Q ss_pred -HHHhcCChhhHHhhhhc--CC-----------H-HHHHHHHHHHHHhhCCh-----HHHHHHHhc-CcHHHHHHHHcCC
Q 000145 719 -SYIAEGDVKPLIKLAKT--SS-----------I-DAAETAVAALANLLSDP-----DIAAEVLLE-DVVSALTRVLAEG 777 (2054)
Q Consensus 719 -~I~~~gaV~~Lv~LL~s--~d-----------~-~Vre~Al~AL~NLa~~~-----e~r~~Iv~~-g~I~~LV~LL~s~ 777 (2054)
.....|+++||+.+|.. .. + -.+.+|+.||+||+..+ +.|..|+++ |+++.|+.+|.++
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~ 618 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence 00013899999999983 21 1 12668999999999865 468888885 9999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCc-hhHhhhh--hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc-ccCCCccCCcc
Q 000145 778 TSEGKKNASRALHQLLKHFPVG-DVLKGNA--QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART-KQGLNFTYPPW 853 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~~~~~~~-e~i~~~i--~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~-~~~~~~i~~~~ 853 (2054)
++.+|++|+++++||+.+...- ..+.... ...+.++.|+.+++. ++...+.+|..+|++++.. ...+..+.
T Consensus 619 n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s--~D~~~r~AAagALAnLts~~~~ia~~ll--- 693 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL--SDVESQRAVAAIFANIATTIPLIAKELL--- 693 (778)
T ss_dssp SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCChHHHHHHH---
Confidence 9999999999999999854210 1221111 112347889999975 4456699999999999743 22222222
Q ss_pred cccccCCCchHHHHHhhhc--CChhHHHHHHHHHHHhhc----cCCchhhhhhhcccccHHHHHHHHhcccCceeehhhh
Q 000145 854 AALAEVPSSIEPLVCCLAE--GPPPLQDKAIEILSRLCG----DQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927 (2054)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~--~~~~vq~~Ai~iL~~L~~----~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~ 927 (2054)
...++++.++.++.+ +++.++++|+.++.|+.. +...-.......+.+++..|.+.+-.++..+-.+.+.
T Consensus 694 ----~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~ 769 (778)
T 3opb_A 694 ----TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAI 769 (778)
T ss_dssp ----TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHH
T ss_pred ----HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHH
Confidence 123578999999998 889999999999999986 2222122333557888999998777777777777766
Q ss_pred HHHH
Q 000145 928 ALLI 931 (2054)
Q Consensus 928 ~~~i 931 (2054)
..+.
T Consensus 770 ~~~~ 773 (778)
T 3opb_A 770 PVIL 773 (778)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.92 E-value=2.6e-24 Score=263.11 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=237.5
Q ss_pred CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-----------CCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-----------~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
.++...+..|+++|.|++. ++++|..+.+.|++++|+.+|.. .++.+|+.|+++|.||+.+++..+..
T Consensus 43 ~~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445667789999999998 58999999999999999999953 24789999999999999988878888
Q ss_pred HHH-cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 554 VES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 554 I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+.. .|+||.|+.+|+++++++++.++++|.||+...+ + ..+..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~---------------~---------------------~~k~~ 165 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD---------------V---------------------NSKKT 165 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC---------------H---------------------HHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC---------------H---------------------HHHHH
Confidence 755 4569999999999999999999999999975311 1 11233
Q ss_pred hhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHh
Q 000145 633 SAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGAL 706 (2054)
Q Consensus 633 l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~r~~Iv-~~g~V~~Lv~LL~dgs~----~vr~~AA~AL~nL 706 (2054)
+.+.|+++.|+.+ ++++++++++.|+++|+||+..+++++..+. ..|+++.|+++|+++++ .+++.|+++|.||
T Consensus 166 i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nL 245 (354)
T 3nmw_A 166 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245 (354)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Confidence 5578899999997 4667899999999999999986677888887 78999999999998765 5899999999999
Q ss_pred hCC--CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHH
Q 000145 707 SRP--TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKK 783 (2054)
Q Consensus 707 s~s--~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~ 783 (2054)
+.. ..+ .++..+.+.|++++|+.+|.+++.+++++|+++|+||+. +++.+..+.+.|++++|++++.++++++|+
T Consensus 246 s~~~a~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 246 SSLIATNE--DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp HHHHTTCH--HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred HhhccCCH--HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 851 122 688899999999999999999999999999999999994 788999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC
Q 000145 784 NASRALHQLLKHFPV 798 (2054)
Q Consensus 784 ~Aa~AL~nL~~~~~~ 798 (2054)
.|+++|.||+.+.+.
T Consensus 324 ~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 324 GSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHH
Confidence 999999999998653
No 27
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.92 E-value=4.6e-24 Score=260.96 Aligned_cols=272 Identities=18% Similarity=0.154 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc-----------CCHHHHHHHHHHHHHhcccCccchhhhhcccc
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREG 475 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s-----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg 475 (2054)
.+..|+.+|++++.++++++.+.+.|+++.|+.++.. .++++|++|+.+|.+++.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4557899999999999999999999999999999953 23678999999999999986668877765555
Q ss_pred -HHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccchhhHHHhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 476 -IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 476 -Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e~r~~I~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
||.|+++|+++++++++.|+++|+||+.. ++++|..+.+.|++++|+++| +++++++++.|+++|+||+.+.++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999984 467899999999999999975 567899999999999999987777777
Q ss_pred HHH-HcCChHHHHHhhccCCh----hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000145 553 CVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2054)
Q Consensus 553 ~I~-e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d 627 (2054)
.+. ..|+++.|+.+++++++ ++++.++++|.|++... ... +
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~---------------------------------a~~-~ 253 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI---------------------------------ATN-E 253 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH---------------------------------TTC-H
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc---------------------------------cCC-H
Confidence 776 79999999999988765 48899999999987520 000 1
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+..+.+.|+++.|+.++++++.++++.|+++|.||+..+++.+..+.+.|++++|+++++++++.+++.|+++|.||+
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 12334567899999999999999999999999999999778999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000145 708 RPTKT 712 (2054)
Q Consensus 708 ~s~~~ 712 (2054)
...+.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 85544
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=245.63 Aligned_cols=494 Identities=14% Similarity=0.128 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHhhcCCCcch-hcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 233 QSNAASLLARLMLAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 233 q~~A~~aL~nLs~~~~~~r~~-i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
...+..+|..+.-..|+.+.. +...|..+.+...+.+.++..+...+...+...+.+ ...|..+ ..++++.|.+.+.
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~ 306 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLN 306 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhc
Confidence 344555555444222332333 457788898888886556666666677777766764 6677666 5677788888875
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gI 391 (2054)
+. .++..|...|.++..... .. ...-...
T Consensus 307 ~~-----------~ir~lAavvL~KL~~~~~--------------------------------------~~--~~si~~L 335 (778)
T 3opb_A 307 VE-----------DVQIYSALVLVKTWSFTK--------------------------------------LT--CINLKQL 335 (778)
T ss_dssp SG-----------GGHHHHHHHHHHHTGGGT--------------------------------------CT--TCCHHHH
T ss_pred cH-----------HHHHHHHHHHHHHhcCCC--------------------------------------CC--cCcHHHH
Confidence 42 156677777766542100 00 0011123
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcc-hHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhh
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAE-AKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g-~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
.+.++..+...+.+ -+.++++.|..+.-+++++..+.... .++.|+.++.. .+..+...++..|.|++...+....
T Consensus 336 a~~~~~~L~~~~~~-~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~- 413 (778)
T 3opb_A 336 SEIFINAISRRIVP-KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX- 413 (778)
T ss_dssp HHHHHHHTTTCCHH-HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC-
T ss_pred HHHHHHHHhcCCcc-HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch-
Confidence 35566666665544 48999999999999999999998875 48999999985 7788899999999999987433211
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~ 549 (2054)
+...+..|..+.+.+.+........ +-+=......++..+.+.|++|+|+.+++++++.+|+.++++|.+|+.+ ..
T Consensus 414 --e~~~l~~Lk~~A~~~~p~~~~~d~~-~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 414 --XXXXXXXXXXXXXXXXPAADKVGAE-KAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp --CCC------------------CCTH-HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred --hhhhhhhhhhhccccCcccCccccc-ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 1235556666655433322211110 1000110112567788999999999999999999999999999999874 77
Q ss_pred HHHHHHHcCChHHHHHhhccCChh---HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 550 IRACVESAGAVPAFLWLLKSGGPK---GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 550 ~r~~I~e~GaI~aLV~LLkS~~~e---vq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.|..+.+.|++++|+.++.+++.. ++..|+.+|.++....+ +.+. . .
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n---------------p~~~------------f-~-- 539 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN---------------PGLI------------F-K-- 539 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC---------------HHHH------------S-S--
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC---------------HHHH------------c-C--
Confidence 899999999999999999988654 89999999999975532 1100 0 0
Q ss_pred HHHHhhhhcccchHHHHHHhcc--CCH------------HHHHHHHHHHHHHhhcC----hhhhhhhhhC-CCHHHHHHH
Q 000145 627 DLVQKGSAANKGLRSLVQVLNS--SNE------------ENQEYAASVLADLFSMR----QDICGSLATD-EIVNPCMRL 687 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks--~s~------------evre~Aa~ALanLas~~----~e~r~~Iv~~-g~V~~Lv~L 687 (2054)
+....|++++|+.+|.. +.. -.+..|+.+|.||++.+ ++.|..+++. |+++.|..+
T Consensus 540 -----~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 540 -----KYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp -----SSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred -----CCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 00112678899998872 111 23778999999999854 3568888886 999999999
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCcccchh-HHHHhcC------ChhhHHhhhhcCCHHHHHHHHHHHHHhh-CChHHHH
Q 000145 688 LTSNTQMVATQSARALGALSRPTKTKTTNK-MSYIAEG------DVKPLIKLAKTSSIDAAETAVAALANLL-SDPDIAA 759 (2054)
Q Consensus 688 L~dgs~~vr~~AA~AL~nLs~s~~~~d~~r-~~I~~~g------aV~~Lv~LL~s~d~~Vre~Al~AL~NLa-~~~e~r~ 759 (2054)
+.++++.+|+.|+++++||+. .+ ..+ ..+.+.+ .+++|+.++++++.++|.+|+++|+|++ .++..+.
T Consensus 615 L~s~n~~VrrAA~elI~NL~~-~~---e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMS-HP---LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHT-SG---GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhC-Cc---HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999996 22 222 1232222 3778999999999999999999999996 5888888
Q ss_pred HHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhhcCCC--c-hhHhhhhhhhhhHHHHHHhhccCCC
Q 000145 760 EVLLE-DVVSALTRVLAE--GTSEGKKNASRALHQLLKHFPV--G-DVLKGNAQCRFVVLTLVDSLNAMDM 824 (2054)
Q Consensus 760 ~Iv~~-g~I~~LV~LL~s--~~~evr~~Aa~AL~nL~~~~~~--~-e~i~~~i~~~g~v~~LV~LL~sg~~ 824 (2054)
.+++. ++++.+++++.+ ++++++..++.++.||....+. . +.+..-.........|..+++..+.
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 88876 799999999999 8999999999999999963221 1 2222222234556667777765543
No 29
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.87 E-value=9.2e-19 Score=236.86 Aligned_cols=704 Identities=13% Similarity=0.111 Sum_probs=443.8
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc---cCCHHHHHHHHHHHHHhc
Q 000145 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR---SGTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk---s~s~evr~~AA~vL~~Ls 112 (2054)
.....+.++++... +.+...|..|-..|..+... .|....|..++. +.++.+|..|+-.|++..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~-----------p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQY-----------PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTS-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34555666666554 34677888888888766332 234455555554 568899999999997764
Q ss_pred cC------chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 113 KD------EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 113 ~~------ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
.. ++.+..+ -+.+++.|.++++.+|..++.++..++..... . .-.+.++.|++.+.+++
T Consensus 77 ~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~-------~wp~ll~~L~~~l~~~~-- 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFI-----KSECLNNIGDSSPLIRATVGILITTIASKGEL-Q-------NWPDLLPKLCSLLDSED-- 141 (852)
T ss_dssp TTSGGGCCHHHHHHH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-T-------TCTTHHHHHHHHHSCSS--
T ss_pred HHccCCCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-c-------ccHHHHHHHHHHHcCCC--
Confidence 32 2333333 35677778888999999999999999863210 0 01348899999997654
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHH-H---HhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhc--ccchH
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRA-T---LEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI--DSGAV 260 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~a-I---~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~--~sGaL 260 (2054)
..+++.++.+|..+|......... . .-...++.++..+.++++.+|..|+.+|..+....+. .+. -...+
T Consensus 142 -~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l 217 (852)
T 4fdd_A 142 -YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFI 217 (852)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHH
Confidence 568889999999998754322100 0 0122467788888888999999999999876632211 111 12466
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcC
Q 000145 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340 (2054)
Q Consensus 261 ~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGg 340 (2054)
+.+...+. +.+..+|..+..+|..+....++.-.... .+.+
T Consensus 218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~------------------------------------- 258 (852)
T 4fdd_A 218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIV------------------------------------- 258 (852)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHH-------------------------------------
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHH-------------------------------------
Confidence 77777766 46778888888888877764221100000 0111
Q ss_pred chhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc
Q 000145 341 MPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2054)
Q Consensus 341 is~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~ 420 (2054)
+.+..++++.+ +.++..++..+..++.
T Consensus 259 ----------------------------------------------------~~l~~~~~~~~-~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 259 ----------------------------------------------------EYMLQRTQDQD-ENVALEACEFWLTLAE 285 (852)
T ss_dssp ----------------------------------------------------HHHHHHHTCSS-HHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------------------HHHHHHccCCc-HHHHHHHHHHHHHHhc
Confidence 22222223222 2244555555555444
Q ss_pred ChhhhHHHhh--cchHHHHHHHh-----------cc-----------CCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 421 NIFLSQWVSH--AEAKKVLIGLI-----------TM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 421 n~~~~~~L~~--~g~I~~LI~LL-----------~s-----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
....++.+.. ...++.++..+ .. .+..++..++.+|..++...++ .+. ...+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~ 361 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHIL 361 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHH
Confidence 3322221111 12233344433 11 1223577888888888765321 221 2467
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh--HHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACV 554 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~--~r~~I 554 (2054)
+.+.+++++++..+|..|+.+|++++....+. ....-.+.++.++.+++++++.+|..+++++++++..... ....
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~- 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-
Confidence 77888888899999999999999998754321 1112245788899999999999999999999999752111 0011
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-- 625 (2054)
-.+.++.|+..+++.++.+|..++++|.+++.... ...++.|..+++..+......+..+++.+......
T Consensus 440 -~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 440 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhh
Confidence 13467788888888999999999999999986532 24567777777766555555677888877643221
Q ss_pred --hHHHHhhhhcccchHHHHH---HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----------
Q 000145 626 --EDLVQKGSAANKGLRSLVQ---VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS---------- 690 (2054)
Q Consensus 626 --~d~~~~~l~~~GaI~~LV~---LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d---------- 690 (2054)
++... ..++.+++ .+++++++.+ .+..++..++..-....... -..+++.++.++++
T Consensus 519 ~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~~~~~l~~~l~~~~~~~~ 590 (852)
T 4fdd_A 519 NKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQRCVNLVQKTLAQAMLNNA 590 (852)
T ss_dssp CCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11211 23555553 3445566664 67788877765311111111 11233444444321
Q ss_pred -------CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChH-HHHHH
Q 000145 691 -------NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPD-IAAEV 761 (2054)
Q Consensus 691 -------gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e-~r~~I 761 (2054)
.+...+..+..+++.++..... ..+..+.+.+.++.+..++.+.+.++++.+..+++.++. .+. ....+
T Consensus 591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 591 QPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred CCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2456788889999999863322 344444456788889999998899999999999999974 222 12222
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 762 v~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+..++.+.+.+..+++.++..|+|+++.++...+ +.+... ....++.|+.++++.+.....+..|..++|.|..
T Consensus 669 --~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~--~~~~p~--~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 669 --ADFMPILGTNLNPEFISVCNNATWAIGEISIQMG--IEMQPY--IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp --HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG--GGGGGG--THHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh--HhHHHH--HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 2367888888888889999999999999987531 222211 1568889999998766666778889999999986
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhhc-CChhHHHHHHHHHHHhhccCCc
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPA 894 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~Ai~iL~~L~~~~~~ 894 (2054)
.... ...|. .+.-+.++...+.. ++...+..|...|+.++..+|.
T Consensus 743 ~~~~--~~~~~------l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 743 VCPQ--EVAPM------LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HCHH--HHGGG------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred hCHH--HhCcc------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4211 11100 12234555555654 5566799999999999998876
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=1.9e-20 Score=214.14 Aligned_cols=242 Identities=25% Similarity=0.289 Sum_probs=217.9
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip 595 (2054)
|+++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+.++++++++++..++++|.+++...
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~------ 75 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP------ 75 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC------
Confidence 56889999999999999999999999999988888888999999999999999999999999999999997541
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
++ .+..+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+
T Consensus 76 ----------~~---------------------~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 76 ----------DE---------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp ----------HH---------------------HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ----------hH---------------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 12224467889999999999999999999999999997789999999
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-C
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-D 754 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~ 754 (2054)
.+.|+++.|+++++++++.++..|+++|++++...+ ..+..+.+.|+++.|+.++.+++++++..|+++|+|++. +
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999986322 566778899999999999999999999999999999997 6
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCC
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
+..+..+.+.|+++.|++++.++++.+|+.|+++|.||+...+
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7778889999999999999999999999999999999998653
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=1.7e-20 Score=214.56 Aligned_cols=241 Identities=24% Similarity=0.306 Sum_probs=220.8
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++++.|+.++.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++++++..++..++++|++++..+++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56889999999999999999999999999987778889999999999999999999999999999999999976889999
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
+.+.|+++.|+++|++++++++..|+++|++|+.+++..+..+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999999999999998788889989999999999999999999999999999999975311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
. ....+.+.|+++.|+.++++++++++..|+++|.+++..+++.
T Consensus 161 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 161 ---------------E---------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred ---------------H---------------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 1112345788999999999999999999999999999888889
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s 709 (2054)
+..+.+.|+++.|+++++++++.++..|+++|.|+...
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999973
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.84 E-value=3.3e-20 Score=213.60 Aligned_cols=240 Identities=21% Similarity=0.235 Sum_probs=215.1
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
...+.++.++++++++++..|+++|+++...+++++..+.+.|+++.|+++|+++++.++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45789999999999999999999998876656778888999999999999999999999999999999999988889999
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
+.+.|+++.|+.+++++++.++..++++|+|++...+ .....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------------------------~~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------------------------EQIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------------------------HHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------------------------hHHHHH
Confidence 9999999999999999999999999999999975421 111224
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+.+.|+++.|+++++++++.++..|+++|++++...+
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-- 212 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-- 212 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--
Confidence 467899999999999999999999999999998788888889999999999999999999999999999999986322
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
..+..+.+.|+++.|+.++.++++++++.|+++|+||+.
T Consensus 213 -~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 213 -EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp -HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred -HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 577788999999999999999999999999999999974
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.84 E-value=2.9e-20 Score=214.01 Aligned_cols=240 Identities=18% Similarity=0.197 Sum_probs=214.7
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
...+.++.++.++++++|..++.+|.++...+.+.+..+.+.|+++.|+++++++++.++..++++|++++.++++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998766555677888899999999999999999999999999999999877889999
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
+.+.|+++.|+++|+++++.+++.|+++|++|+.+.+.....+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 9999999999999999999999999999999998766554778899999999999999999999999999999975411
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
+ ....+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.
T Consensus 171 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 171 ---------------E---------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred ---------------H---------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 1 1112345789999999999999999999999999999878899
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+..+.+.|+++.|+++++++++.++..|+++|.+|+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999974
No 34
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=8.3e-18 Score=215.75 Aligned_cols=569 Identities=13% Similarity=0.109 Sum_probs=382.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
|..|+..|.++++++|..|++.|..++..- . .... ....+|.|...+ + .+..++..+..+|..++..-.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~---~---~~~~-~~~l~~~L~~~~-d---~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL---G---VERT-RSELLPFLTDTI-Y---DEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS---C---HHHH-HHTHHHHHHHTC-C---CCHHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHh---C---HHHH-HHHHHHHHHHhc-C---CcHHHHHHHHHHHHHHHhccC
Confidence 678888899999999999999999887521 1 1111 224677777665 2 235688888888887765311
Q ss_pred chhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nL 286 (2054)
+. . ....-++.|..++.++++.++..++.+|.+++...+. .......++.+..+.. +.+...|..+..++..+
T Consensus 81 ~~-~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 GP-E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVC 153 (588)
T ss_dssp SG-G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHH
T ss_pred cH-H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 11 0 1112355566666777888999999999888843221 1111122333333333 33444555444444443
Q ss_pred hhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHH
Q 000145 287 SSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIG 366 (2054)
Q Consensus 287 s~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~Lg 366 (2054)
......
T Consensus 154 ~~~~~~-------------------------------------------------------------------------- 159 (588)
T 1b3u_A 154 YPRVSS-------------------------------------------------------------------------- 159 (588)
T ss_dssp TTTSCH--------------------------------------------------------------------------
T ss_pred HHhcCH--------------------------------------------------------------------------
Confidence 332000
Q ss_pred HHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCH
Q 000145 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA 446 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ 446 (2054)
.....+.+.+..++++.+. .+|..++.+++.++..... .......++.+..++.+.+.
T Consensus 160 -------------------~~~~~l~~~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~ 217 (588)
T 1b3u_A 160 -------------------AVKAELRQYFRNLCSDDTP-MVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQD 217 (588)
T ss_dssp -------------------HHHHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCH
T ss_pred -------------------HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcH
Confidence 0001223444455554443 4888888888887543211 11234567788888888889
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh
Q 000145 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2054)
Q Consensus 447 evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~ 526 (2054)
.++..++.+|..++...+.. ......+|.+.+++++++..+|..++.+|..++...+. .......++.+.++++
T Consensus 218 ~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMK 291 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhC
Confidence 99999999998887642211 11234677888888888899999999999999874222 1123346788899999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHH
Q 000145 527 AGSQKAREVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLAL 600 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~L 600 (2054)
++++.+|..++.+|..++..-. ..+....-...++.+..++++.++.+|..++++|..++..-. ...+|.+..+
T Consensus 292 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~ 371 (588)
T 1b3u_A 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQ 371 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 9999999999999999976322 111111124567888889999999999999999999875421 3467888999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~ 680 (2054)
+++++++++..+..+++.+......... ....++.+..++++.++.+|..++.++..++..-.. .......
T Consensus 372 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l 442 (588)
T 1b3u_A 372 LKDECPEVRLNIISNLDCVNEVIGIRQL------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKL 442 (588)
T ss_dssp HTCSCHHHHHHHHTTCHHHHHHSCHHHH------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHH
T ss_pred hCCCchHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH---HHHHHHH
Confidence 9999999999999888887654332211 123578888899999999999999999998752111 1223356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH
Q 000145 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 681 V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
++.+.+++++.+..+|..|+.+++.+...... ......+++.|..++.+.+..+|..++.+++.++.. ....
T Consensus 443 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~--~~~~ 514 (588)
T 1b3u_A 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK------EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQD 514 (588)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--cCHH
Confidence 78889999999999999999999999862211 112345788888888889999999999999999742 1112
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
......++.|.+++.+.++.+|..+++++++++..- +... ......+.|..++. +.+...+..|..+++.+.
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~----~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL--DNST----LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS--CHHH----HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh--chhh----hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhh
Confidence 234568899999999999999999999999999743 1211 11234455556543 345567888988888764
No 35
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=5.8e-18 Score=217.15 Aligned_cols=569 Identities=15% Similarity=0.099 Sum_probs=391.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
+..|+..|+++++.+|..|+..|..++....... .....++.|...+ ++++++|..++.+|..+...-. ...
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~~--- 83 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GPE--- 83 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SGG---
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cHH---
Confidence 7788899999999999999999988753211110 1124566666665 5688999999999998774210 110
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 166 ~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
.....++.|..++.++ +..++..+..+|.+++...... ......++.+..+..+++..+|..++.++..++.
T Consensus 84 --~~~~ll~~L~~l~~~~---~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 84 --YVHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp --GGGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred --HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1234677777766543 4679999999999999865432 1122235666666677788899999999988773
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~ 325 (2054)
..+ .......++.+..++. +.+..+|..+..++..+....... ....
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~------------------------- 202 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELD---NVKS------------------------- 202 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHH---HHHH-------------------------
T ss_pred hcC----HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcHH---hHHH-------------------------
Confidence 221 1122345566666665 567788888888877776531000 0000
Q ss_pred hhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000145 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2054)
Q Consensus 326 lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e 405 (2054)
.+.+.+..++++.+.
T Consensus 203 ----------------------------------------------------------------~l~~~l~~~~~d~~~- 217 (588)
T 1b3u_A 203 ----------------------------------------------------------------EIIPMFSNLASDEQD- 217 (588)
T ss_dssp ----------------------------------------------------------------THHHHHHHHHTCSCH-
T ss_pred ----------------------------------------------------------------HHHHHHHHHhcCCcH-
Confidence 111333334443332
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
.+|..++.+++.++.... ........++.+..++.+.+..++..++.+|..++..... .......++.+.+++++
T Consensus 218 ~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKD 292 (588)
T ss_dssp HHHTTHHHHHHHHHHHSC--HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCC
Confidence 366677777776643211 1112234567777888888899999999999988764211 11223467889999999
Q ss_pred CChhhhHHHHHHHHHHhhhccch-hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDS-KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~-r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV 564 (2054)
+++.+|..++.+|..++...... +....-...+|.+.+++++.++.+|..++++|..++..-.. .. .....++.+.
T Consensus 293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~ 369 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFL 369 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHH
Confidence 99999999999999998743321 11122234567788889999999999999999988642111 11 1234678888
Q ss_pred HhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 565 WLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 565 ~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
.+++++++++|..+..+|..+..... ...+|.+.+++++.+..++..+..+++.++...... ......+
T Consensus 370 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~ 443 (588)
T 1b3u_A 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE------FFDEKLN 443 (588)
T ss_dssp HHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG------GCCHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH------HHHHHHH
Confidence 99999999999999999998876421 357788999999988899999999998886432221 1122357
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
+.+..++++++..+|+.|+.++..++....+ ......+++.+..++++.+..+|..++.+++.++.. ....
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------~~~~ 514 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CGQD 514 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------cCHH
Confidence 8888889999999999999999999763221 112346788888888889999999999999999852 1112
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
.....+++.|..++++.+++||..++.+|+.+...-+ .....+..+|.|..++.+.++++|..|.+++..+.
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD--NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 2334588999999999999999999999999975211 11223456777888888889999999999998764
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=1.7e-16 Score=214.84 Aligned_cols=682 Identities=15% Similarity=0.120 Sum_probs=429.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-----cHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000145 51 NMSSPQERELITMRILTIAKA-----KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~-----~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~G 125 (2054)
.+.+...|..|.-.|.+.... +++.+..| -+.++..|.++++.+|..++.++..+...+... .-.+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i------k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI------KSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH------HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHH
Confidence 456677888888888887643 33444444 345666788889999999999999886532110 1126
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHH-------HcCcHHHHHHhhCCCCCCChhHHHHHHHHH
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV-------TEGVVPTLWDQLNPKNKQDNVVQGFVTGAL 198 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv-------~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL 198 (2054)
.++.|++.+.++++.+++.++.+|..++... ...+. -...+|.+++.+.+. +..++..|+++|
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-------~~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~A~~aL 198 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-------AEILDSDVLDRPLNIMIPKFLQFFKHS---SPKIRSHAVACV 198 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-------TTHHHHCSSSSCHHHHHHHHTTTTTCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-------HHHhchhhhcchHHHHHHHHHHHhcCC---CHHHHHHHHHHH
Confidence 7899999999999999999999999999621 11111 123677777777644 367899999999
Q ss_pred HHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHH
Q 000145 199 RNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRAS 278 (2054)
Q Consensus 199 ~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~ 278 (2054)
.++......... -.-...++.+...+.+++++++..++.+|..++...++...... .+.++.++..++ +.+..++..
T Consensus 199 ~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~-~~~~~vr~~ 275 (852)
T 4fdd_A 199 NQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALE 275 (852)
T ss_dssp HTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHT-CSSHHHHHH
T ss_pred HHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHcc-CCcHHHHHH
Confidence 988865432110 00113567888888888999999999999999965443222222 246777888877 467789999
Q ss_pred HHHHHHHHhhccHHHHHHHHh--cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCC
Q 000145 279 AADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR 356 (2054)
Q Consensus 279 Aa~aL~nLs~~s~e~Rk~I~e--aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~ 356 (2054)
+...+..++.. ...++.+.. ...++.++..+.....+.. +..+. +..-..-.+.....+
T Consensus 276 a~e~l~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~-----------------~~~~d-~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 276 ACEFWLTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDII-----------------LLKGD-VEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHHH-----------------HHHC-------------CCCC
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHHH-----------------HhcCC-cccccccccccccch
Confidence 99999888764 333332211 1233444444422110000 00000 000000000000011
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHH
Q 000145 357 LAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436 (2054)
Q Consensus 357 ~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~ 436 (2054)
.....+..++.++... . ...+ ..+.+.+..++.+.+ ..+|..++.+++.+.....-.-.-.-.+.++.
T Consensus 337 vr~~a~~~L~~la~~~---~------~~~~--~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 337 LRKCSAAALDVLANVY---R------DELL--PHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp HHHHHHHHHHHHHHHH---G------GGGH--HHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---c------HHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1223334444444321 0 0111 134577777777765 45999999999999764421111122467889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
++.++.+.++.++..++.++.+++...........-.+.++.|++.++++++.+|..|+++|.+++...... ....-.+
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ 483 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAY 483 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHH
Confidence 999999999999999999999988642211111122356788999998889999999999999998743322 1112234
Q ss_pred CCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh--h-HHHHHHHcCChHHHH---HhhccCChhHHHHHHHHHHHHHHhhc
Q 000145 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSE--D-IRACVESAGAVPAFL---WLLKSGGPKGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 517 aIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd--~-~r~~I~e~GaI~aLV---~LLkS~~~evq~~AA~AL~nLs~~~e 590 (2054)
.++.|+.+++..+.+....+..++..++.... . ....+ ...++.++ ..+++.+++.+ .+..++..++....
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~--~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH--HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH--HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 56777778887777777677777777753100 0 01111 12355555 34456667764 67788888776532
Q ss_pred hh-------hHHHHHHHhcC-----------------CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh
Q 000145 591 SA-------TINQLLALLLG-----------------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646 (2054)
Q Consensus 591 ~~-------~Ip~Lv~LL~~-----------------~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL 646 (2054)
.. .++.++.+++. .+.+.+..+.++++.+...... .....+.+.+.++.+...+
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l 638 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCM 638 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHh
Confidence 22 22333333321 1344666677788877653321 1122233467889999999
Q ss_pred ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCCh
Q 000145 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV 726 (2054)
Q Consensus 647 ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV 726 (2054)
.+.++++|+.+..++..++...++.....+. ..++.+.+.+..+++.++..|+++++.++..... .... .-..++
T Consensus 639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~p--~~~~il 713 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVL 713 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGGG--GTHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHHH--HHHHHH
Confidence 8889999999999999998644433333222 3778888888888889999999999999863221 2222 224578
Q ss_pred hhHHhhhhcC--CHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCC
Q 000145 727 KPLIKLAKTS--SIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 727 ~~Lv~LL~s~--d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
++|+.++++. ...+++.++.+++.|+. +|+.-.. .-...++++.+.|.. ++.+.++.|...++.+....|
T Consensus 714 ~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~-~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 714 HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc-cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh
Confidence 8899998874 46899999999999986 4432110 023456777777764 567789999999999998765
No 37
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.76 E-value=4.9e-14 Score=197.99 Aligned_cols=687 Identities=12% Similarity=0.109 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHH-HHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchh
Q 000145 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKEA-RLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2054)
Q Consensus 39 ~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~a-r~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~ 117 (2054)
..+.++++.+.+ .++..|..|...|.+....+... ..... ...++.+++.|.+.++.+|..|+..|+.+...-..
T Consensus 6 ~~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMTS--SDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcCC--CCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 346677777643 56778999988888765432000 00000 13578889999999999999999999988753221
Q ss_pred HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000145 118 RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH--VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2054)
Q Consensus 118 r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~--~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al 195 (2054)
. .....++.|+..|.++++.+|..|+.+|..++..... .. .....-.-...+|.|++.+.+. .+..++..++
T Consensus 82 ~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al 155 (1230)
T 1u6g_C 82 Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL 155 (1230)
T ss_dssp H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHH
Confidence 1 1123567888888888888999999999999863211 10 0000112234789999999742 2357899999
Q ss_pred HHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhH
Q 000145 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2054)
Q Consensus 196 ~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~V 275 (2054)
.+|..++......... .....++.+...+.++++.+|..++.+|..++...++ .+ -...++.++..+....+..+
T Consensus 156 ~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhH
Confidence 9999998532110000 1123567788888888899999999999999843322 11 22467888888864444456
Q ss_pred HHHHHHHHHHHhhccHHHHHHHH--hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcC----c----hhHH
Q 000145 276 RASAADALEALSSKSIKAKKAVV--AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG----M----PALV 345 (2054)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~I~--eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGg----i----s~lI 345 (2054)
+..+..++..+....+. .+. -...++.++..+.+.+.+ +++.+..++..+... + +.++
T Consensus 231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~---------vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDE---------LREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTT---------THHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 77788888887663221 121 145677788877765433 556666666665421 1 2233
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh-hh
Q 000145 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FL 424 (2054)
Q Consensus 346 ~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~-~~ 424 (2054)
+.+.+.+...... .. + ....... ..+ .....+...+ ..... . ........+|..++.++..+.... ..
T Consensus 299 ~~ll~~l~~d~~~-~~-~--~d~~~~~-~~~--~~~~~~~~~~--~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 299 NICLKYLTYDPNY-NY-D--DEDEDEN-AMD--ADGGDDDDQG--SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp HHHTTCCCCC-----------------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhCCCCCC-CC-c--ccccccc-ccc--ccccccchhh--ccccc-c-cccccCHHHHHHHHHHHHHHHHhchhH
Confidence 4444443321110 00 0 0000000 000 0000000000 00000 0 011122347888999998886421 11
Q ss_pred hHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc----------------chhhh--hccccHHHHHhhhcCC
Q 000145 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG----------------IWEAI--GKREGIQLLISLLGLS 486 (2054)
Q Consensus 425 ~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e----------------~r~~I--ve~ggIp~LV~LL~s~ 486 (2054)
-.. .-...++.++..+.+.+++++..++.++..+...... ....+ .-...++.+.+.++++
T Consensus 368 ~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 446 (1230)
T 1u6g_C 368 LPE-FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446 (1230)
T ss_dssp HHH-HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC
Confidence 111 1124556677777777888998888888776542110 00000 0112345566668888
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCC--HHHHHHHHHHHHHHhcC-Chh-HHHHHHHcCChHH
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH-SED-IRACVESAGAVPA 562 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s--~~Vre~AA~aL~nLa~~-sd~-~r~~I~e~GaI~a 562 (2054)
+..+|..++.+|..+....++.-.. .-...++.+.+.|++.. ..++.+++..+..+... ... ....+ ...++.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~ 523 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPP 523 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHH
Confidence 8889999999999988753321111 11234566777777764 58999999999988642 222 23333 568899
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh--cCCCcchHHHHHHHHHHHHhhhcch
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~~e--------------~~~Ip~Lv~LL--~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
|+..+.+.++.++..+..++..+...-. ...++.++..+ .+.+++++..+..+++.++......
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 9999999888888888889988875421 24567778888 5677789999999999987543221
Q ss_pred HHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
.... -...++.|...+. ++.+|..++.++..++..........+-..+++.|...+++.+..+|..++.++..+
T Consensus 604 --~~~~--~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 604 --LGSD--LPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --CCTH--HHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --hhhh--HHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0000 0123455555554 345788889999988753211111223356778888899999999999999999999
Q ss_pred hCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHHcCC
Q 000145 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 707 s~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL~s~ 777 (2054)
....+. ......+. ..+..+..++.+.|.++...+..+|+.+... +..- .-..+..++.++.++.+.
T Consensus 678 ~~~~~~--~~~~~~v~-~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 678 IKNYSD--SLTAAMID-AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL-SKISGSILNELIGLVRSP 745 (1230)
T ss_dssp HHHCCT--TCCHHHHH-HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG-GGTTTTTHHHHHHHHTCT
T ss_pred Hhcccc--cCCHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhH-HHhHHhHHHHHHHHHcCc
Confidence 873322 11000000 0122223445667888888999999999752 2211 012345566666666543
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.76 E-value=1.9e-17 Score=185.58 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=179.8
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.++.+.|+.+++++++.++..|+++|++++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.+++..+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 46788999999999999999999999999987788889999999999999999999999999999999999988888889
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.+.+.|+++.|+.+++++++.++..++++|.|++...+ + ....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~~ 133 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------------E---------------------QIQA 133 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------H---------------------HHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH----------------H---------------------HHHH
Confidence 99999999999999999999999999999999974311 1 0112
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+.+.|+++.|+.+++++++++++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999779999999999999999999999999999999999999974
No 39
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.75 E-value=2.6e-13 Score=190.68 Aligned_cols=1067 Identities=15% Similarity=0.150 Sum_probs=580.0
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHH-HHHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKKA 296 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e-~Rk~ 296 (2054)
+..++..+.++++++|..|..-|.+....+............++.++..+. +.+..+|..|..+|..+....+. ...
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~- 85 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE- 85 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence 567777788889999999988888765322111111122357788888887 57889999999999998865322 111
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~ 376 (2054)
..++.|++.+.+++.. +|..+..+|..+....++. ..
T Consensus 86 ----~i~~~Ll~~l~d~~~~---------vR~~a~~~L~~i~~~l~~~-----------~~------------------- 122 (1230)
T 1u6g_C 86 ----TIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA-----------SS------------------- 122 (1230)
T ss_dssp ----HHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC----------------------------------
T ss_pred ----HHHHHHHHHhcCCcHH---------HHHHHHHHHHHHHHhCCCc-----------cc-------------------
Confidence 2345666666665433 4445555555543211000 00
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHH
Q 000145 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2054)
Q Consensus 377 ~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~ 454 (2054)
...........+.+.|...+....+..++..++.+++.++.. ..+.. .....++.++..+.+.+..++..++.
T Consensus 123 ---~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 123 ---GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 000000011244577777777433445899999999988642 12211 11345677888888888999999999
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHH
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vr 533 (2054)
++..++....+. +. ...++.+++.+... +...+..++.++..++...++ +..-.-...++.+++.+.+.++++|
T Consensus 198 al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 198 ALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999998653221 11 23577788777644 346788889999998874332 1111113456677777778889999
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhc-------------------------------------cCChhHH
Q 000145 534 EVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLK-------------------------------------SGGPKGQ 575 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLk-------------------------------------S~~~evq 575 (2054)
+.+..++..++.... ..+..+ ...++.++..++ +...++|
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR 350 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 350 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHH
Confidence 999999988865321 111111 112333333221 1123568
Q ss_pred HHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc-----------------hHHHHh
Q 000145 576 DASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-----------------EDLVQK 631 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-----------------~d~~~~ 631 (2054)
..++.+|..++.... ...++.++..+.+.+++++..+..++..+...... ......
T Consensus 351 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1230)
T 1u6g_C 351 RAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430 (1230)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH
Confidence 889999998876321 23467777777888888998888888877643211 011111
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhhCC
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSRP 709 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~--~vr~~AA~AL~nLs~s 709 (2054)
. -...++.+...++++++.+|..++.+|..++...++.... .-...++.+...+.+.++ .++..++.++..+...
T Consensus 431 ~--l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 431 Q--VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp H--TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred H--hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 1 1234556666688899999999999999998743322111 123567888888888754 8999999999988752
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Ch-------HHHHHHHhcCcHHHHHHHH--cCCC
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP-------DIAAEVLLEDVVSALTRVL--AEGT 778 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~-------e~r~~Iv~~g~I~~LV~LL--~s~~ 778 (2054)
... +.... .-...++.|+..+.+.+..++..++.++..++. .+ ..... ....++.++..+ .+.+
T Consensus 508 ~~~-~~~~~--~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~ 582 (1230)
T 1u6g_C 508 HSP-QVFHP--HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADID 582 (1230)
T ss_dssp SCG-GGGHH--HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSC
T ss_pred CCH-HHHHh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCC
Confidence 222 01211 224588889999999888898889999988862 11 11111 124677788888 6678
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCccccccc
Q 000145 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2054)
+++|..|+.+++.|+.... +.+.... ...++.|...+.. ...+..++.+++.++...... ....|
T Consensus 583 ~~vr~~a~~~lg~L~~~~g--~~~~~~~--~~~l~~L~~~l~~----e~~r~~~~~al~~i~~~~~~~--~~~~~----- 647 (1230)
T 1u6g_C 583 QEVKERAISCMGQIICNLG--DNLGSDL--PNTLQIFLERLKN----EITRLTTVKALTLIAGSPLKI--DLRPV----- 647 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTG--GGCCTHH--HHHHHHHHHHTTS----SSHHHHHHHHHHHHTTCSSCC--CCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhC--chhhhhH--HHHHHHHHHHhcc----chhHHHHHHHHHHHHhCcccc--chHHH-----
Confidence 9999999999999997641 2221110 2344445555532 234778888988887532110 00011
Q ss_pred CCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHhcccch
Q 000145 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHK 938 (2054)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~~k~~~ 938 (2054)
.+..++.|...+.+.++.++..++..|.+++...+... ..
T Consensus 648 ~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~----------------------------------------~~ 687 (1230)
T 1u6g_C 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL----------------------------------------TA 687 (1230)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC----------------------------------------CH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC----------------------------------------CH
Confidence 12236667777778888899999999999887653200 00
Q ss_pred hhhHHHHhhcCCcHHHHHHHHHHhhhc-cCCCCCCcccccCCCccccccccccCCCCcCCCCCcchhhHHHHHHHHHhcc
Q 000145 939 KQSMDALDLSGYLKPLIYALVDMMKQN-SSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017 (2054)
Q Consensus 939 ~~~~~~L~~~g~~~~~i~~Lv~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~ 1017 (2054)
..+.. +.... .+....|.. ....++-.|+.+...
T Consensus 688 --------------~~v~~---~l~~ll~ll~~~D~~----------------------------~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 688 --------------AMIDA---VLDELPPLISESDMH----------------------------VSQMAISFLTTLAKV 722 (1230)
T ss_dssp --------------HHHHH---HHTTCGGGSCTTCHH----------------------------HHHHHHHHHHHHTTS
T ss_pred --------------HHHHH---HHHHHHhhcCcchHH----------------------------HHHHHHHHHHHHHHh
Confidence 00000 00000 000011100 112233333333332
Q ss_pred CCCCcchhhhccchHHHHHHhhccCCCC-cccccccchhHHHHHHHHHHccCcccccchhhhccHHHHHHHhcc-----c
Q 000145 1018 LRNNNVTVMEAGALEALSDKLASYTSNP-QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRS-----D 1091 (2054)
Q Consensus 1018 ~~~~k~~~~e~g~~~~l~~~l~~~~~~~-q~~~~~~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~-----~ 1091 (2054)
.+..-.-. ---.+..+.+.+. ... |...-+. ...+++.+.++..- .+.-...++.|...+.. .
T Consensus 723 ~~~~~~~~-~~~~l~~~~~~l~---~~~~~~~~~~~-----l~~~~~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~ 791 (1230)
T 1u6g_C 723 YPSSLSKI-SGSILNELIGLVR---SPLLQGGALSA-----MLDFFQALVVTGTN--NLGYMDLLRMLTGPVYSQSTALT 791 (1230)
T ss_dssp CGGGGGGT-TTTTHHHHHHHHT---CTTCCHHHHHH-----HHHHHHHHHTTCCT--TCSHHHHHHHHSTTTTTC----C
T ss_pred CchhHHHh-HHhHHHHHHHHHc---CcccchHHHHH-----HHHHHHHHHhcCCC--CCCHHHHHHHHhccccCCCCccc
Confidence 22110000 0011222222221 100 1000000 00111222211000 00011111222111110 1
Q ss_pred chhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhhcccccCCchhhhhhhhhhcccCCcHHHHHhhhcccccccc
Q 000145 1092 EVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVG 1171 (2054)
Q Consensus 1092 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~ 1171 (2054)
.+..|+.+|+.++.++...... .+ .++.. +..+ +++|+
T Consensus 792 ~~~~~~~~a~~i~~~~~~~~~~-----------~~--~~~~~----------~~~~---~~~~~---------------- 829 (1230)
T 1u6g_C 792 HKQSYYSIAKCVAALTRACPKE-----------GP--AVVGQ----------FIQD---VKNSR---------------- 829 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC-----------SH--HHHTT----------TTTT---TTTTT----------------
T ss_pred cchhhHHHHHHHHHHHHhcchh-----------hH--HHHHH----------HHHH---hCCCC----------------
Confidence 3345788888877765421111 00 00000 0000 01110
Q ss_pred hhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHHhcchhhHHHHhhcCCCCcccHHHHHHHHHHhhcC
Q 000145 1172 STARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251 (2054)
Q Consensus 1172 ~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~~~~l~k~ls~~~~~~~~~~~~~l~~~lf~~ 1251 (2054)
..+.....++..|-.+...-+-.. +....+.+.|+|+. +.++.+.+|+.-++.++.
T Consensus 830 ------------------~~~~~~~~~l~~l~~~g~~~~~~~----~~~l~~~~~~~l~~-~~~~Vr~aAa~aLg~l~~- 885 (1230)
T 1u6g_C 830 ------------------STDSIRLLALLSLGEVGHHIDLSG----QLELKSVILEAFSS-PSEEVKSAASYALGSISV- 885 (1230)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHSCCCS----CTHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH-
T ss_pred ------------------ccHHHHHHHHHHHHHhcccCCCcc----cccHHHHHHHHhCC-CCHHHHHHHHHHhHHHhc-
Confidence 001111122222222211001000 11235677777764 688899999998888872
Q ss_pred cccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhhcccccccch-HhhhccchhHHHhhccchhHHHHHHHHHHHhh
Q 000145 1252 PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDS-DLAGQAVPPLVDMLSAASECELEVALVALVKL 1330 (2054)
Q Consensus 1252 ~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~-~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl 1330 (2054)
.+.. .-+..+...+..+ ...||....||.+.+......+. ..+.+...+|+..+....+.....+-.+|=+|
T Consensus 886 ----~~~~--~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l 958 (1230)
T 1u6g_C 886 ----GNLP--EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 958 (1230)
T ss_dssp ----HTHH--HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHH
T ss_pred ----cCHH--HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhh
Confidence 1111 1244555556554 56799999999998864221111 12234455666666655555554555555555
Q ss_pred ccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccccchhhhhhhhhcCChhHHHHHHH
Q 000145 1331 TSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410 (2054)
Q Consensus 1331 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~ 1410 (2054)
..-.+ ...+..+.+.|.+++ ...+..+...++.++++..=...+.-..++.||+..|+.+...+.+++.
T Consensus 959 ~~~~~----------~~l~p~l~~~l~~~~-~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~ 1027 (1230)
T 1u6g_C 959 TLIDP----------ETLLPRLKGYLISGS-SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVAL 1027 (1230)
T ss_dssp HHSSG----------GGTHHHHTTTSSSSC-HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHH
T ss_pred hccCh----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 22221 345666666666644 4467666666666665432111122356788999999999999999999
Q ss_pred HHHHhhhhhhhhhHhhh--hcchhhhhHhhhc------------------ccchhHHHHHHHHHHHhhcCCCchhHHHhh
Q 000145 1411 CAFERLLDDEQQVELVE--GYDVVDLLVRLVS------------------GTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470 (2054)
Q Consensus 1411 ~~~~~ll~~e~~~~~~~--~~~~v~~lv~~~~------------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 1470 (2054)
.+|..+..... +.+. -...+.+|+.... -.+..+.+.|..|+-++=...+. ++++
T Consensus 1028 ~~l~~~~~~~~--~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~-~i~~-- 1102 (1230)
T 1u6g_C 1028 VTFNSAAHNKP--SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD-RLDI-- 1102 (1230)
T ss_dssp HHHHHHHHHCG--GGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS-SSCH--
T ss_pred HHHHHHHhcCh--HhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH-hCCH--
Confidence 99998764322 1111 1224444444432 23347899999999999887665 3332
Q ss_pred hhhhhHhhhhCCCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCC----------CCCchhHHHHHHHHH
Q 000145 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQP----------DFSLWGQHSALQALV 1540 (2054)
Q Consensus 1471 ~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~al~~l~ 1540 (2054)
.-++.++++=+|.-.+-=--+..-|.|+.+.+.. +..+..-..|+|+--++... +-...-++++|.++.
T Consensus 1103 ~~~~~~~~~gl~d~~di~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~ 1181 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPS-AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVA 1181 (1230)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCH-HHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCchHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Confidence 2355555555566311111122223333333311 12245567778887665432 123456789999999
Q ss_pred HhhcCCcccc
Q 000145 1541 NILEKPQSLV 1550 (2054)
Q Consensus 1541 ~~~e~~~~~~ 1550 (2054)
-+...|.+..
T Consensus 1182 ~l~~~~~~~~ 1191 (1230)
T 1u6g_C 1182 ALLTIPEAEK 1191 (1230)
T ss_dssp HTTSSCSCSS
T ss_pred HHHhCCCccc
Confidence 8888886654
No 40
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.75 E-value=6.2e-14 Score=188.38 Aligned_cols=740 Identities=13% Similarity=0.081 Sum_probs=447.6
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhccCc-
Q 000145 40 TVAKFLEQL-HANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDE- 115 (2054)
Q Consensus 40 ~V~qlIe~L-~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls~~e- 115 (2054)
.+.+++... .+ .+...|..|-..|..+...+ ..|....|..++.+. ++.+|..|+.+|.+.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC
Confidence 466777666 54 46778889999998865532 135677888888764 6899999999998864321
Q ss_pred hhH-------HH--HH---hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC
Q 000145 116 DLR-------LK--VL---LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2054)
Q Consensus 116 e~r-------~~--v~---~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~ 183 (2054)
..+ .. +- ....-+.|++.|.++++.+|..++.+|..++.... +.+ . -...++.|++.+.++
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p~~--~--w~~ll~~L~~~l~~~ 146 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---PHG--A--WPELMKIMVDNTGAE 146 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---GGT--C--CHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---ccc--c--cHHHHHHHHHHHhcC
Confidence 000 00 10 01223577788888889999999999999986310 000 0 013678888888765
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchhHHH--HhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCC-Ccchhcccc
Q 000145 184 NKQDNVVQGFVTGALRNLCGDKDGYWRAT--LEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGD-SIPTVIDSG 258 (2054)
Q Consensus 184 s~~d~~V~e~Al~aL~nL~~~~e~r~~aI--~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~-~r~~i~~sG 258 (2054)
. +..+++.++.+|..++..-......+ .....++.+...+.+. +++++..++.+|..+...-.. .........
T Consensus 147 ~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 147 Q--PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp S--CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 2 35688899999999987532210000 0111355666777776 789999999999887521100 000000112
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh
Q 000145 259 AVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338 (2054)
Q Consensus 259 aL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs 338 (2054)
.++.+...+. +.+..+|..+..++..+....++.-........++.+...+.+.+.. ++..++..+..++
T Consensus 225 ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 225 LMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK---------VASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHH
Confidence 4555555555 56778999999999888764322111111113344555555554422 4455555554443
Q ss_pred cC-------------------------chhHHHHhhhhcCCCC---------chhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000145 339 GG-------------------------MPALVVYLGELSQSPR---------LAAPVADIIGALAYALMVFEQKSGVDDE 384 (2054)
Q Consensus 339 Gg-------------------------is~lI~~L~elL~s~~---------~~~~iA~~LgaL~~~~~~l~~~~~~~~~ 384 (2054)
.. ...+++.+...+.... ........++.++... . ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~---~------~~ 365 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC---G------NH 365 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---G------GG
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---c------Hh
Confidence 21 0223444444444321 1223444555554322 0 01
Q ss_pred ccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChh---hhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 385 ~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~---~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
.+ ..+.+.+...+.+.+ ..+|..++.+++.+..... ....+ ...++.++..+.+.++.++..++.++..++.
T Consensus 366 ~~--~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 366 IL--EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp GH--HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 11 134466667777655 4589999999999975421 11111 2467888888888899999999999998876
Q ss_pred cCccc---hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcC--CHHHH
Q 000145 462 REVGI---WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAG--SQKAR 533 (2054)
Q Consensus 462 ~s~e~---r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~--s~~Vr 533 (2054)
.-... ... -...++.++..++++ +.++..++++|.+++....+ ....-.-...++.|++++++. ++.+|
T Consensus 441 ~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr 517 (861)
T 2bpt_A 441 SVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNAR 517 (861)
T ss_dssp HHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHH
T ss_pred HhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHH
Confidence 42111 111 134578888888775 88999999999999874321 100001123456677778754 37899
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhcc---------------CChhHHHHHHHHHHHHHHhhc-------
Q 000145 534 EVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKS---------------GGPKGQDASAMALTKLIRAAD------- 590 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLkS---------------~~~evq~~AA~AL~nLs~~~e------- 590 (2054)
..+..++..+..... .....+ ...++.++..+.+ ....++..+..+|.++.....
T Consensus 518 ~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 595 (861)
T 2bpt_A 518 ASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595 (861)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999976432 222222 2345566655542 134577888999998886532
Q ss_pred hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 591 SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~-~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
...++.+.+.++..+. .++..+..+++.++...... . ... -...++.|...++++++++|..++.++..++....
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~-~~~--l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-F-EKY--LETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-G-HHH--HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-H-HHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 2356777888887766 88888888888886432211 1 110 12357888888888888999999999999876433
Q ss_pred hhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC----------
Q 000145 670 DICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS---------- 737 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs--~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d---------- 737 (2054)
+... -.-...++.+.+.+++.+ +.+|..+..+++.++..... ..... -..++++++..+....
T Consensus 672 ~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~--l~~~l~~l~~~~~~~~~~~d~d~~~~ 746 (861)
T 2bpt_A 672 EDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA--DFIPY--LNDIMALCVAAQNTKPENGTLEALDY 746 (861)
T ss_dssp GGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG--GGHHH--HHHHHHHHHHHHTCCCSSSSHHHHHH
T ss_pred hhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh--hHHHH--HHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 2111 112456777788887754 78999999999999863222 22211 1236677777776421
Q ss_pred -HHHHHHHHHHHHHhhC--ChHHHHHHH--hcCcHHHHHHHHcCC----CHHHHHHHHHHHHHhhhcCCCchhHhhhhhh
Q 000145 738 -IDAAETAVAALANLLS--DPDIAAEVL--LEDVVSALTRVLAEG----TSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2054)
Q Consensus 738 -~~Vre~Al~AL~NLa~--~~e~r~~Iv--~~g~I~~LV~LL~s~----~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~ 808 (2054)
..++..++.++..++. .+. ...+. -...++.|...+.+. +..+|+.|..+++.|+..-+. ..+... ..
T Consensus 747 ~~~vr~~~l~~~~~i~~~l~~~-~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g-~~~~~~-~~ 823 (861)
T 2bpt_A 747 QIKVLEAVLDAYVGIVAGLHDK-PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD-GSIKQF-YG 823 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC-HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT-STTGGG-TT
T ss_pred HHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC-chHHHH-Hh
Confidence 3467788888888863 111 11111 123455555666553 789999999999999875311 122111 11
Q ss_pred hhhHHHHHHhhcc-CCCCchhHHHHHHHHHHHh
Q 000145 809 RFVVLTLVDSLNA-MDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 809 ~g~v~~LV~LL~s-g~~~~~~~~~AL~ALa~La 840 (2054)
...++.|+..++. ...+...+..|.-+++.++
T Consensus 824 ~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 824 QDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 2467888888874 3333445666666766665
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.73 E-value=3.7e-17 Score=183.16 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=182.6
Q ss_pred chhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc
Q 000145 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 387 ~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
+..+..+.|+.++++.+.+ ++..++.+|.+++ .++.....+.+.++++.|+.++.+++++++..++.+|.+++..+++
T Consensus 9 ~~~~~~~~l~~LL~s~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4456678999999988765 9999999999998 5677888899999999999999999999999999999999987788
Q ss_pred chhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc
Q 000145 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC 545 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~ 545 (2054)
.+..+.+.|+++.|+++++++++.++..++++|+|++.++++.+..+.+.|+++.|+++|++++++++..|+++|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998777777888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
+++..+..+.+.|+++.|+.+++++++++++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888889999999999999999999999999999999999863
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.73 E-value=3.4e-14 Score=191.29 Aligned_cols=772 Identities=13% Similarity=0.067 Sum_probs=444.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhc-cCchh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLC-KDEDL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls-~~ee~ 117 (2054)
+.++++.+. +.+.+.|..|...|.++.... ..+.++.|+..+.++ ++.+|..|+.+|++.. ...+.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 445555554 356778899999998765431 135678888888774 5889999999998753 22221
Q ss_pred HHHHHh---cCC--------hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 118 RLKVLL---GGC--------IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 118 r~~v~~---~Ga--------Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
+..... ... -+.+++.|.++++.+ ..++.++..++.... . ... -...++.|++.+.+++ .
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~---~--~~~--w~~ll~~l~~~l~~~~-~ 142 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI---P--VNQ--WPELIPQLVANVTNPN-S 142 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG---G--GTC--CTTHHHHHHHHHHCTT-C
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC---c--ccc--cHHHHHHHHHHHhCCC-C
Confidence 111100 011 234778887777777 888889988875210 0 000 1247888999887652 1
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhcccchHHHH
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVKAL 263 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~~-r~~i~~sGaL~~L 263 (2054)
+..++..++.+|..++..-.+....-.-...++.+...+.++ +..++..++.+|..+....+.. .........++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l 222 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356888999999999874321100000122356677777766 6889999999999887321100 0001111246666
Q ss_pred HHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchh
Q 000145 264 VQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 264 L~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
...+. +.+..+|..+..++..+....++.-........++.++..+.+.+.. ++..++..+.+++.....
T Consensus 223 ~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 223 CEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHHHh
Confidence 66665 46678898898988888764332211122223344444443332211 233333333332210000
Q ss_pred HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChh
Q 000145 344 LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF 423 (2054)
Q Consensus 344 lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~ 423 (2054)
. . ........+ .....+.. ....+.
T Consensus 293 ~--------------------~--~~~~~~~~~-~~~~~~~~------------------~~~~~~-------------- 317 (876)
T 1qgr_A 293 L--------------------A--IEASEAAEQ-GRPPEHTS------------------KFYAKG-------------- 317 (876)
T ss_dssp H--------------------H--HHHHHHHHH-SSCCSSCC------------------CCHHHH--------------
T ss_pred H--------------------h--hhhcccccc-CCCccchh------------------HHHHHH--------------
Confidence 0 0 000000000 00000000 000000
Q ss_pred hhHHHhhcchHHHHHHHhc-------cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHH
Q 000145 424 LSQWVSHAEAKKVLIGLIT-------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496 (2054)
Q Consensus 424 ~~~~L~~~g~I~~LI~LL~-------ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~ 496 (2054)
. -...++.++..+. +.+..++..++.+|..++....+ .+. ...++.+.+.+.+.+..+|..++.
T Consensus 318 ---~--~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a~~ 388 (876)
T 1qgr_A 318 ---A--LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVM 388 (876)
T ss_dssp ---H--HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---H--HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHHHH
Confidence 0 0122344444443 23356788888888888765221 222 245667777888889999999999
Q ss_pred HHHHHhhhcc-chhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCChHHHHHhhccCCh
Q 000145 497 LIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 497 aL~nLs~~s~-e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~---r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
+|+.++.... +.... .-...++.++..|+++++.+|..|+++|.+++...... ...+ ...++.|+..+++. +
T Consensus 389 ~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 389 AFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-P 464 (876)
T ss_dssp HHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-H
T ss_pred HHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-H
Confidence 9999987433 21111 22346788889999999999999999999998642210 1111 23567777888774 8
Q ss_pred hHHHHHHHHHHHHHHhhc---------------------hhhHHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcchHH
Q 000145 573 KGQDASAMALTKLIRAAD---------------------SATINQLLALLLGD---SPSSKAHVIKVLGHVLTMALQEDL 628 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e---------------------~~~Ip~Lv~LL~~~---~~~V~~~a~~AL~~La~~~~~~d~ 628 (2054)
.++..++++|.+++.... ...++.|.+.+... +..++..+.++++.+...... +.
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~ 543 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DC 543 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TT
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hh
Confidence 999999999999986521 23567777777654 346777888999888754332 11
Q ss_pred HHhhhhcccchHHHHHHhcc----------C-C----HHHHHHHHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCC
Q 000145 629 VQKGSAANKGLRSLVQVLNS----------S-N----EENQEYAASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNT 692 (2054)
Q Consensus 629 ~~~~l~~~GaI~~LV~LLks----------~-s----~evre~Aa~ALanLas~~~-e~r~~Iv~~g~V~~Lv~LL~dgs 692 (2054)
.. .-...++.++..+.. . + ++++..+..++..++..-. +... -.-..+++.++.++++.+
T Consensus 544 ~~---~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 544 YP---AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL-QISDVVMASLLRMFQSTA 619 (876)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH-TTHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh-HHHHHHHHHHHHHHHhcc
Confidence 10 011235555554432 1 2 4567888899998876432 1111 112456788888887764
Q ss_pred --HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcH
Q 000145 693 --QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS--DPDIAAEVLLEDVV 767 (2054)
Q Consensus 693 --~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I 767 (2054)
..++..+..++..++..... ..... . ..+++.|...+.+. +.+++..++.+++.++. .+..... -...+
T Consensus 620 ~~~~v~~~a~~~l~~l~~~~~~--~~~~~-~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~ 693 (876)
T 1qgr_A 620 GSGGVQEDALMAVSTLVEVLGG--EFLKY-M-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEVM 693 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHHHGG--GGGGG-H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHh--hHHHH-H-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHH
Confidence 47899999999998862211 12111 1 23677788888886 89999999999999974 2222222 23567
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCC--C-------chhHHHHHHHH
Q 000145 768 SALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM--N-------GTDVADALEVV 836 (2054)
Q Consensus 768 ~~LV~LL~s--~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~--~-------~~~~~~AL~AL 836 (2054)
+.|...+.+ .+.++|..+.+++++++...+ ..+...+ ...++.+...+....+ + ...+..++.++
T Consensus 694 ~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g--~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~ 769 (876)
T 1qgr_A 694 QLLLENLGNENVHRSVKPQILSVFGDIALAIG--GEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAY 769 (876)
T ss_dssp HHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG--GGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccHHhhHHHHHHHHHHHHHhc--hhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH
Confidence 788888876 467899999999999987421 2222111 3455666666643211 1 14566667777
Q ss_pred HHHhhcc-cCCCccCCcccccccCCCchHHHH----HhhhcC--ChhHHHHHHHHHHHhhccCCc-hhhhhhhcccccHH
Q 000145 837 ALLARTK-QGLNFTYPPWAALAEVPSSIEPLV----CCLAEG--PPPLQDKAIEILSRLCGDQPA-VLGDFLMARSSSIG 908 (2054)
Q Consensus 837 a~La~~~-~~~~~i~~~~~~~~~~~~~L~~Lv----~ll~~~--~~~vq~~Ai~iL~~L~~~~~~-~~~~~~~~~~~~i~ 908 (2054)
..+...- .......+.. ......++.+. ....++ +..+|..|+..|..++...+. ....+. .+.|+.
T Consensus 770 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~i~ 844 (876)
T 1qgr_A 770 TGIVQGLKGDQENVHPDV---MLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE--ARPMIH 844 (876)
T ss_dssp HHHHHHHHCSSSSCCGGG---GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH--TSHHHH
T ss_pred HHHHHHHccCcccccchH---HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH--hcHHHH
Confidence 7655321 1100000000 00111233333 333455 667999999999999875432 222221 457888
Q ss_pred HHHHHHhcccCceeehhhhHHH
Q 000145 909 ALADRIMHSSSLEVRVGGAALL 930 (2054)
Q Consensus 909 ~La~~il~s~~~ev~~~~~~~~ 930 (2054)
.+..+.+.++..++|..+...+
T Consensus 845 ~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 845 ELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHhHHHHHHHHH
Confidence 8998777788888887776655
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.72 E-value=3.7e-13 Score=180.87 Aligned_cols=732 Identities=14% Similarity=0.113 Sum_probs=440.4
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 87 PLFISIL-RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 87 p~LV~LL-ks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
..++..+ .+++.+.|..|-..|..+.... ..+.+..|++++.+ .++.+|..|+..|.+..... ....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~---w~~~ 76 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK---DSVK 76 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS---SHHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc---ChHH
Confidence 3344445 6788999999999998874321 12456788888876 47899999999999986421 1000
Q ss_pred HH------H--H---HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-C-chhHHHHhhCChHHHHhhhccC-C
Q 000145 164 MK------I--F---VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-D-GYWRATLEAGGVDIIVGLLSSD-N 229 (2054)
Q Consensus 164 re------~--I---v~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~-e-~r~~aI~eaGGI~~LV~LL~s~-s 229 (2054)
.. . + ....+-..|++.+.+.+ ..++..+..+|..+.... + +.|.. .++.|+..+.++ +
T Consensus 77 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~---~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~ 148 (861)
T 2bpt_A 77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIE---PRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQP 148 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSC
T ss_pred HHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCC
Confidence 00 0 0 11223456777776543 567888888888887653 1 23332 467788888888 8
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCc-chhcccchHHHHHHHhccC-CChhHHHHHHHHHHHHhhccHHH-HHHHHhcCCHHH
Q 000145 230 AAAQSNAASLLARLMLAFG-DSI-PTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKA-KKAVVAADGVPV 305 (2054)
Q Consensus 230 ~evq~~A~~aL~nLs~~~~-~~r-~~i~~sGaL~~LL~LL~s~-~d~~Vr~~Aa~aL~nLs~~s~e~-Rk~I~eaggL~~ 305 (2054)
+.++..++.+|..++..-. +.+ -.-.....++.+...+.+. .+..+|..+..++..+...-... .........++.
T Consensus 149 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Confidence 8999999999999995322 111 0111223566667777643 26789999999998874321110 000000112344
Q ss_pred HHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcc
Q 000145 306 LIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385 (2054)
Q Consensus 306 LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~ 385 (2054)
|.+.+.+++.+ ++..+..+|..+....+..+ ...
T Consensus 229 l~~~~~~~~~~---------~r~~a~~~l~~l~~~~~~~~-------------------------------------~~~ 262 (861)
T 2bpt_A 229 VCEATQAEDIE---------VQAAAFGCLCKIMSKYYTFM-------------------------------------KPY 262 (861)
T ss_dssp HHHHHTCSCHH---------HHHHHHHHHHHHHHHHGGGC-------------------------------------HHH
T ss_pred HHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHH-------------------------------------HHH
Confidence 44444443322 44555565555432111100 000
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhh---------------HHH--hhcchHHHHHHHhccC----
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS---------------QWV--SHAEAKKVLIGLITMA---- 444 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~---------------~~L--~~~g~I~~LI~LL~ss---- 444 (2054)
+ ...+.+.+...+.+.++ .++..++..+..++...... +.+ .-...++.++..+...
T Consensus 263 l-~~~l~~~~~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~ 340 (861)
T 2bpt_A 263 M-EQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP 340 (861)
T ss_dssp H-HHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred H-HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0 00223444455555443 48888888888775532100 001 0134566777777642
Q ss_pred ---CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhcc-chhhHHHhhCCCch
Q 000145 445 ---TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPP 520 (2054)
Q Consensus 445 ---d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~-e~r~~I~~aGaIp~ 520 (2054)
+..++..+..+|..++.... ..+. ...++.+.+.+.+.+..+|+.++.+++.++.... +.-.... ...++.
T Consensus 341 ~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~ 415 (861)
T 2bpt_A 341 EDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPS 415 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence 24678888899988876422 1111 2345667777888888999999999999986422 1111111 246777
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------
Q 000145 521 LVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------- 590 (2054)
Q Consensus 521 LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------- 590 (2054)
|+..++++++.+|..++++|+.++..-.. ....+ ...++.++..+++. +.++..++++|.+++....
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhh
Confidence 88888889999999999999998752110 00011 23467777888775 8999999999999987521
Q ss_pred ----hhhHHHHHHHhcCCC--cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc---------------C
Q 000145 591 ----SATINQLLALLLGDS--PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---------------S 649 (2054)
Q Consensus 591 ----~~~Ip~Lv~LL~~~~--~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks---------------~ 649 (2054)
...++.|.+++...+ ++++..+.++++.+....... . ... -...++.++..+.. .
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~-~~~--~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~ 568 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-V-AET--SASISTFVMDKLGQTMSVDENQLTLEDAQS 568 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-G-HHH--HHHHHHHHHHHHHHHTTSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-h-HHH--HHHHHHHHHHHHHHHHhhhcccCChhhHHH
Confidence 234677778887433 678888999999987543321 1 000 11245556665542 1
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhh
Q 000145 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKP 728 (2054)
Q Consensus 650 s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~-~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~ 728 (2054)
..+++..+..+|.+++..-++.... .-...++.+...+++.+. .++..+..+++.++..... .... .-...++.
T Consensus 569 ~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~--~l~~i~~~ 643 (861)
T 2bpt_A 569 LQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEK--YLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHH--HHHHHHHH
Confidence 3457788999999998743332111 123567778888888776 8899999999998862221 2221 12337888
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhhcCCCchhHhh
Q 000145 729 LIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGT--SEGKKNASRALHQLLKHFPVGDVLKG 804 (2054)
Q Consensus 729 Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~--~evr~~Aa~AL~nL~~~~~~~e~i~~ 804 (2054)
|...+++.+.+++..++.+++.++. ....... ....++.+.+.+.+.+ +.+|..+..+++.++...+ +.+..
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~ 719 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSLEEDFRRY--SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG--ADFIP 719 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH--HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhchhccch--HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh--hhHHH
Confidence 8888988888999999999998874 2222222 2346777788887754 8899999999999987531 22221
Q ss_pred hhhhhhhHHHHHHhhccCCC--C-------chhHHHHHHHHHHHhhcccCC-CccCCcccccccCCCchHHHHHhhhcC-
Q 000145 805 NAQCRFVVLTLVDSLNAMDM--N-------GTDVADALEVVALLARTKQGL-NFTYPPWAALAEVPSSIEPLVCCLAEG- 873 (2054)
Q Consensus 805 ~i~~~g~v~~LV~LL~sg~~--~-------~~~~~~AL~ALa~La~~~~~~-~~i~~~~~~~~~~~~~L~~Lv~ll~~~- 873 (2054)
.+ ...++.++..+..... + ...+..++++++.+...-... .... ++ .+.-+..+..++.+.
T Consensus 720 ~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~-~~-----~~~i~~~l~~~~~d~~ 791 (861)
T 2bpt_A 720 YL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF-PY-----VGTIFQFIAQVAEDPQ 791 (861)
T ss_dssp HH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG-GG-----HHHHHHHHHHHHHCHH
T ss_pred HH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-HH-----HHHHHHHHHHHHcCcc
Confidence 11 3466777777753210 1 234567777777776431110 0000 00 111234444454543
Q ss_pred ---ChhHHHHHHHHHHHhhccC-CchhhhhhhcccccHHHHHHHHh
Q 000145 874 ---PPPLQDKAIEILSRLCGDQ-PAVLGDFLMARSSSIGALADRIM 915 (2054)
Q Consensus 874 ---~~~vq~~Ai~iL~~L~~~~-~~~~~~~~~~~~~~i~~La~~il 915 (2054)
+..++..|+.++..++... ...+..+. ...++..|.+.+-
T Consensus 792 ~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 792 LYSEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTR 835 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCchHHHHH--hcHHHHHHHHHHh
Confidence 7789999999999998754 22222222 1267888887765
No 44
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=187.62 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=166.9
Q ss_pred ccHHHHHhhhcCCCh--hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 474 EGIQLLISLLGLSSE--QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~--~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
-.+|.++++|+++++ +++..|++.|.+|+..+++++..+.+.|++|+|+++|+++++++|+.|+++|.||+.++++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999988 889999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 552 ACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
..+.+.|+||+|+++|+ +++.++++.++.+|+||+..++ .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-----------------~k~~------------------- 131 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-----------------LKNL------------------- 131 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-----------------GHHH-------------------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-----------------hHHH-------------------
Confidence 99999999999999998 5789999999999999986532 1110
Q ss_pred hhhhcccchHHHHHHhc----------------cCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhccC--
Q 000145 631 KGSAANKGLRSLVQVLN----------------SSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTSN-- 691 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLk----------------s~s~evre~Aa~ALanLas~~~e~r~~Iv~~-g~V~~Lv~LL~dg-- 691 (2054)
+.+ +++++|++++. ..+.+++++|+.+|.||++.+++.|..+.+. |.|+.|+.+++.+
T Consensus 132 --i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 132 --MIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp --HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred --HHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 111 23555555331 2367999999999999998788999999876 6789999999752
Q ss_pred ----CHHHHHHHHHHHHHhhC
Q 000145 692 ----TQMVATQSARALGALSR 708 (2054)
Q Consensus 692 ----s~~vr~~AA~AL~nLs~ 708 (2054)
++..+++|..+|+||+.
T Consensus 209 ~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 209 DYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCTTCHHHHHHHHHHHHHCC
T ss_pred cccchhHHHHHHHHHHHHHHh
Confidence 45789999999999986
No 45
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=180.85 Aligned_cols=199 Identities=22% Similarity=0.233 Sum_probs=167.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHH
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRL 119 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~ 119 (2054)
+..+++.|+..+.+.+.+..|+..|.+++.+++.+|..|.+ .|+||.||++|+++++++|..|+++|.+|+. ++++|.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55677777665544467788999999999999999999998 8999999999999999999999999999997 478999
Q ss_pred HHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCC---C----------CC
Q 000145 120 KVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP---K----------NK 185 (2054)
Q Consensus 120 ~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s---~----------s~ 185 (2054)
.+.+.|+||+|+++|++ .+.++++.|+.+|++|+. .+.+|..+++ +++|.|++++.. + ..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-----~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-----NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-----ChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999985 799999999999999996 4556778877 479999997741 1 11
Q ss_pred CChhHHHHHHHHHHHHhcCCCchhHHHHhhC-ChHHHHhhhccC------CHHHHHHHHHHHHHHHhh
Q 000145 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAG-GVDIIVGLLSSD------NAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 186 ~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaG-GI~~LV~LL~s~------s~evq~~A~~aL~nLs~~ 246 (2054)
.+..+++++.++|+||+..++..++.|++.+ +|+.|+.++... +...+++|+.+|.||++.
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 2457999999999999997755557787764 589999999763 457899999999999853
No 46
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.67 E-value=5.7e-13 Score=179.43 Aligned_cols=694 Identities=13% Similarity=0.088 Sum_probs=397.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHH--------HHHHhh--hcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 000145 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKEA--------RLLIGS--HAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2054)
Q Consensus 42 ~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~a--------r~~I~~--~aGgVp~LV~LLks~s~evr~~AA~vL~~L 111 (2054)
..++..+...+.+...|..|...|.+.....+.. +..+.. ....-+.++..|.++++.+ ..++.++..+
T Consensus 38 ~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i 116 (876)
T 1qgr_A 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGI 116 (876)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHH
Confidence 3344555554456777888888888865322111 110000 0112234777888877777 8888888887
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHH--HcCcHHHHHHhhCCCCCCC
Q 000145 112 CKDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFV--TEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 112 s~~ee~r~~v~~~GaIp~LV~LL~se--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv--~aG~Vp~Lv~LL~s~s~~d 187 (2054)
+....... .-...++.|++.+.++ ++.+|..++.+|..++... .. +.+. -...++.+.+.+..+. ..
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~---~~---~~~~~~~~~ll~~l~~~l~~~~-~~ 187 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI---DP---EQLQDKSNEILTAIIQGMRKEE-PS 187 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS---CH---HHHGGGHHHHHHHHHHHHSTTC-SC
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---CH---hhHHhHHHHHHHHHHHhhcCCC-CC
Confidence 64321100 0126689999999887 9999999999999998521 11 1111 1235667777776552 13
Q ss_pred hhHHHHHHHHHHHHhcCCCchh-HHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHH
Q 000145 188 NVVQGFVTGALRNLCGDKDGYW-RATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~-~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~L 266 (2054)
..++..++++|.++...-.... ........++.+...+.+.+.+++..++.+|..+....++.-........++.++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999875421110 000111246666777777788999999999999996554433333333567777777
Q ss_pred hccCCChhHHHHHHHHHHHHhhccHHHHH---HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchh
Q 000145 267 VGQNNDISVRASAADALEALSSKSIKAKK---AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 267 L~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk---~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
+. +.+..++..+...+..++........ ...+.+.-+ ..+...+. ...+..+ ++.
T Consensus 268 ~~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~l---l~~ 325 (876)
T 1qgr_A 268 MK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP------EHTSKFYA------------KGALQYL---VPI 325 (876)
T ss_dssp HT-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC------SSCCCCHH------------HHHHHHH---HHH
T ss_pred hc-CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc------cchhHHHH------------HHHHHHH---hHH
Confidence 76 46778999999888888763111000 000000000 00000000 0000000 111
Q ss_pred HHHHhhhhcC-----CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHh
Q 000145 344 LVVYLGELSQ-----SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL 418 (2054)
Q Consensus 344 lI~~L~elL~-----s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L 418 (2054)
++..+.+... +.+........++.++.... +.+. ..+.+.+...+.+.+ ..+|..++.+++.+
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----------~~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----------DDIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----------GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHT
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCc----------HhhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHH
Confidence 1122211111 01112233444444443220 0111 134466667776654 45999999999999
Q ss_pred hcChh---hhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc---hhhhhccccHHHHHhhhcCCChhhhH
Q 000145 419 YGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI---WEAIGKREGIQLLISLLGLSSEQHQE 492 (2054)
Q Consensus 419 ~~n~~---~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~---r~~Ive~ggIp~LV~LL~s~d~~Vr~ 492 (2054)
..... ... .-...++.++..+.+.++.++..++.+|.+++...+.. ...+ ...++.++..++++ +.++.
T Consensus 394 ~~~~~~~~~~~--~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~ 468 (876)
T 1qgr_A 394 LEGPEPSQLKP--LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVAS 468 (876)
T ss_dssp SSSSCHHHHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHH
T ss_pred HcCCCHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHH
Confidence 75432 222 12356788999999999999999999999998753321 1111 35677888888774 78999
Q ss_pred HHHHHHHHHhhhccc-----------hhhHH--HhhCCCchHhhhhhcC---CHHHHHHHHHHHHHH-------------
Q 000145 493 YAVQLIAILTEQVDD-----------SKWAI--TAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL------------- 543 (2054)
Q Consensus 493 ~Aa~aL~nLs~~s~e-----------~r~~I--~~aGaIp~LV~LL~s~---s~~Vre~AA~aL~nL------------- 543 (2054)
.++++|.+++....+ ....+ .-...++.|.+.+... +..++..+..++..+
T Consensus 469 ~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~ 548 (876)
T 1qgr_A 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQ 548 (876)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHH
Confidence 999999999864210 00000 0012334444444332 234444444444433
Q ss_pred -------------------------------------------hcCCh--hHHHHHHHcCChHHHHHhhccCC--hhHHH
Q 000145 544 -------------------------------------------CCHSE--DIRACVESAGAVPAFLWLLKSGG--PKGQD 576 (2054)
Q Consensus 544 -------------------------------------------a~~sd--~~r~~I~e~GaI~aLV~LLkS~~--~evq~ 576 (2054)
...-. .....+ ...++.++.++++.. +.++.
T Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~ 626 (876)
T 1qgr_A 549 KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQE 626 (876)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccH
Confidence 22110 000000 123556667777654 47899
Q ss_pred HHHHHHHHHHHhhc-------hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc
Q 000145 577 ASAMALTKLIRAAD-------SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS 648 (2054)
Q Consensus 577 ~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~-~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks 648 (2054)
.+..++..++.... ...++.+...+.+. ++.++..+.++++.+....... ... .-...++.++..+++
T Consensus 627 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~--~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIP--FCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHH--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhh--hHHHHHHHHHHHhCC
Confidence 99999999886521 24567788888875 7888988999999887543211 111 013457788888876
Q ss_pred --CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC----H-------HHHHHHHHHHHHhhCCCCccc-
Q 000145 649 --SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT----Q-------MVATQSARALGALSRPTKTKT- 714 (2054)
Q Consensus 649 --~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs----~-------~vr~~AA~AL~nLs~s~~~~d- 714 (2054)
.+.+++..+..++.+++...++.... .-..+++.+.+.+.... + .+|..+..++..+........
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~-~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~ 781 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKK-YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQE 781 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 36789999999999997632222111 11345666666665432 2 677778888876654111000
Q ss_pred --ch-hHHHHhcCChhhHHhhh----hcC--CHHHHHHHHHHHHHhhCC--h-HHHHHHHhcCcHHHHHH-HHcCCCHHH
Q 000145 715 --TN-KMSYIAEGDVKPLIKLA----KTS--SIDAAETAVAALANLLSD--P-DIAAEVLLEDVVSALTR-VLAEGTSEG 781 (2054)
Q Consensus 715 --~~-r~~I~~~gaV~~Lv~LL----~s~--d~~Vre~Al~AL~NLa~~--~-e~r~~Iv~~g~I~~LV~-LL~s~~~ev 781 (2054)
.. ...+ ...++.++..+ .+. +..+|..|+.+|+.|+.. . .. ........+++|+. .+.+.++.+
T Consensus 782 ~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~ 858 (876)
T 1qgr_A 782 NVHPDVMLV--QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKA 858 (876)
T ss_dssp SCCGGGGGS--GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHH
T ss_pred cccchHHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhH
Confidence 00 0000 11233333333 555 789999999999999752 2 22 22334567888888 898999999
Q ss_pred HHHHHHHHHHhhh
Q 000145 782 KKNASRALHQLLK 794 (2054)
Q Consensus 782 r~~Aa~AL~nL~~ 794 (2054)
|..|+|+++++..
T Consensus 859 r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 859 KTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.66 E-value=2.5e-15 Score=179.67 Aligned_cols=184 Identities=22% Similarity=0.218 Sum_probs=164.0
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhh-hhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQ-LLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~-LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
.+.+..|+..|.+++. +.++...+.+.|++++|+. +|.++++.+|+.|+++|++++.+++..+..+.+.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4578889999999988 5678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH
Q 000145 567 LKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2054)
Q Consensus 567 LkS~-~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L 645 (2054)
++++ ++.+++.|+|+|+|++.+.. . ....+.+.|+++.|+.+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~----------------~---------------------~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQE----------------A---------------------GLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCH----------------H---------------------HHHHHHHTTHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCc----------------H---------------------HHHHHHHCCCHHHHHHH
Confidence 9964 78999999999999975411 0 01113456789999999
Q ss_pred hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 000145 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 646 Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s 709 (2054)
+++++..++..|+++|.+|+.++++.+..+++.|++++|+.+|+++++.+++.|+++|++|...
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999988899999999999999999999999999999999999999974
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.63 E-value=7.6e-15 Score=175.42 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHH-HHccCCHHHHHHH
Q 000145 36 STMSTVAKFLEQLHAN----------MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNV 104 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~s----------sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~-LLks~s~evr~~A 104 (2054)
.-...+...++.|.+. +.+.+.|..|+..|.+++...++++.+ .+ .|++|.|+. +|+++++++|..|
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~-~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQ-LSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HH-TTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HH-cCCHHHHHHHHHcCCCHHHHHHH
Confidence 3456677777778764 344568999999999999987766555 45 799999999 9999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCC
Q 000145 105 AATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182 (2054)
Q Consensus 105 A~vL~~Ls~~-ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s 182 (2054)
+++|++++.+ +..+..++..|++++|+++|++ .+..+++.|+++|.+++.+ ...+.+.+++.|++|.|+.+|.+
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~----~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999875 5688889999999999999996 5899999999999999973 45567889999999999999986
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 183 ~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
++ ..++..++++|.+++.+++.....+.+.|+++.|+.+|.+++..+++.++.+|.++...
T Consensus 179 ~d---~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QV---QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SC---HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 53 67899999999999998777788999999999999999999999999999999999954
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=5.8e-12 Score=164.21 Aligned_cols=510 Identities=13% Similarity=0.106 Sum_probs=339.2
Q ss_pred ChHHHHhhhccCCHHHHHH-HHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSN-AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~-A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
-+.-+-..|.+++...+.. ..++++.+..+.+ -..+...+++++. +++..+|..+-..+..++..+++..
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH-
Confidence 3556666777777555544 4455555553331 1345677888887 5778899888888888776433332
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
.-.++.+.+-+.++++. ++..|+.+|+++.. +..
T Consensus 85 ----~l~~n~l~kdL~~~n~~---------ir~~AL~~L~~i~~--~~~------------------------------- 118 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPL---------IRALAVRTMGCIRV--DKI------------------------------- 118 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHH---------HHHHHHHHHHTCCS--GGG-------------------------------
T ss_pred ----HHHHHHHHHHcCCCCHH---------HHHHHHHHHHcCCh--HHH-------------------------------
Confidence 12345555556655533 45566666665531 110
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC-hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHH
Q 000145 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n-~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~ 454 (2054)
...+.+.+..++.+.++ .+|..|+.++..++.. ++. +...+.++.+..++.+.++.++..|+.
T Consensus 119 ------------~~~l~~~l~~~L~d~~~-~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 119 ------------TEYLCEPLRKCLKDEDP-YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp ------------HHHHHHHHHHHSSCSCH-HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHH
Confidence 01233556777876655 5999999999999753 332 222456788999999999999999999
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHH
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre 534 (2054)
+|..++..+++....-...+.++.|++.+...++-.+...+.+|.+++..+++. ....++.+..+|++.++.++.
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHH
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHH
Confidence 999999875543211112345677777777778878888888877776432221 123466777788888999999
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHh--cCCCcch
Q 000145 535 VAAHVLWILCC----HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL--LGDSPSS 608 (2054)
Q Consensus 535 ~AA~aL~nLa~----~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL--~~~~~~V 608 (2054)
.|++++.++.. +.+..+..+ ....+.|+.++ ++++++|+.+..+|..+......-..+.+..++ .+++..+
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~I 334 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYV 334 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHH
Confidence 99999999863 223333322 34567888766 478999999999999998753211111111111 2344677
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 609 ~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
+..+.+.+..+.... .+. ..++.|..++++.+.+.|..+++++..++...++.. ...++.|++++
T Consensus 335 r~~al~~L~~l~~~~----nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll 399 (591)
T 2vgl_B 335 KLEKLDIMIRLASQA----NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHTCCSS----THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCChh----hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHH
Confidence 887777776654221 111 247778888988999999999999999997544332 34679999999
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcH
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I 767 (2054)
++..+.++..+..++.++....+. . ...++..|++.+.+ .+++++..++|+|+..+..-.. ....+
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~---~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l 466 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPN---K-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELL 466 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCS---S-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHCcc---h-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHH
Confidence 999999999999999998763333 2 24578889888875 6788999999999988753221 11334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 768 SALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 768 ~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+.+++-+.+.++.+|..+..++.++....|... ...+..++........+...+..|...++.+..
T Consensus 467 ~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~--------~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 467 ESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET--------QELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT--------HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH--------HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 445544556689999999999999998654210 124455666553333455678888888777753
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=1.3e-11 Score=160.78 Aligned_cols=515 Identities=12% Similarity=0.113 Sum_probs=338.0
Q ss_pred cCcHHHHHHHHccCCHHHHHHHH-HHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVA-ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA-~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~ 161 (2054)
.|-+..+-+.|++++.+.+..++ +++..+..+.+. ..+++.+++++.+++.++|+.+.-++..++.. .+
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~ 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS----QP 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH----SH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----Cc
Confidence 36678888889988877776654 444555444432 24578888999999999999999999998852 22
Q ss_pred hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 162 ~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
+ .+ .-++..+.+-|.+++ +.++..|+++|+++.... -.. ..++.+..++.+.++.+|..|+.++.
T Consensus 82 e---~~--~l~~n~l~kdL~~~n---~~ir~~AL~~L~~i~~~~--~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~ 146 (591)
T 2vgl_B 82 D---MA--IMAVNSFVKDCEDPN---PLIRALAVRTMGCIRVDK--ITE-----YLCEPLRKCLKDEDPYVRKTAAVCVA 146 (591)
T ss_dssp H---HH--HTTHHHHGGGSSSSS---HHHHHHHHHHHHTCCSGG--GHH-----HHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred h---HH--HHHHHHHHHHcCCCC---HHHHHHHHHHHHcCChHH--HHH-----HHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1 11 125677777776544 678889999988886321 111 13567888999999999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
+++..+++ .+.+.+.++.+..++. +.+..++..|..+|..+...+++.+..-...+.+..|+..+
T Consensus 147 ~i~~~~p~---~~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l----------- 211 (591)
T 2vgl_B 147 KLHDINAQ---MVEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL----------- 211 (591)
T ss_dssp HHHHSSCC---CHHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-----------
T ss_pred HHHhhChh---hcccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-----------
Confidence 99965544 2233578899999997 67888999999999888775221100000000011111111
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
..
T Consensus 212 ------------------------------------------------------------------------------~~ 213 (591)
T 2vgl_B 212 ------------------------------------------------------------------------------NE 213 (591)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhccc---CccchhhhhccccHHH
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR---EVGIWEAIGKREGIQL 478 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~---s~e~r~~Ive~ggIp~ 478 (2054)
.++ ..|...++.++.++..+.- .....++.+..++++.++.++..|+.++..+... +++....+. ....+.
T Consensus 214 ~~~-~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~ 287 (591)
T 2vgl_B 214 CTE-WGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPP 287 (591)
T ss_dssp CCH-HHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHH
T ss_pred CCc-hHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHH
Confidence 111 1333344444433321110 0123456777778888999999999999998742 223222222 245577
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G 558 (2054)
|+.++. +++.+|..++.+|..+....++.- . ..+..+..+ .+.+..+|..+++.|.+++... ... .
T Consensus 288 L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~----~-~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~-nv~------~ 353 (591)
T 2vgl_B 288 LVTLLS-GEPEVQYVALRNINLIVQKRPEIL----K-QEIKVFFVK-YNDPIYVKLEKLDIMIRLASQA-NIA------Q 353 (591)
T ss_dssp HHHHTT-SCHHHHHHHHHHHHHHHHHCCSTT----T-TCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSS-THH------H
T ss_pred HHHHhc-CCccHHHHHHHHHHHHHHhChHHH----H-HHHHhheec-cCChHHHHHHHHHHHHHHCChh-hHH------H
Confidence 777664 788999999999999988544321 1 122222222 2445899999999999997532 222 2
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 559 aI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
.++.|...+++.+.+.+..+++++++++..- ....++.|++++++..+.+...+..+++.+....+. ..
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--------~~ 425 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--------KY 425 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--------SC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--------hH
Confidence 3566778888899999999999999998642 245789999999999888888777777776532211 12
Q ss_pred ccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 636 NKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 636 ~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
..++..|+..+.+ .+++++..++|+|+..+..-++ ....+..+++-+.+.++.+|..+..++.++....+.
T Consensus 426 ~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-- 497 (591)
T 2vgl_B 426 ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-- 497 (591)
T ss_dssp CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS--
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch--
Confidence 4468888888864 4688999999999988763221 113344444444567889999999999999974443
Q ss_pred chhHHHHhcCChhhHHhhh-hc-CCHHHHHHHHHHHHHhhCChHH
Q 000145 715 TNKMSYIAEGDVKPLIKLA-KT-SSIDAAETAVAALANLLSDPDI 757 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL-~s-~d~~Vre~Al~AL~NLa~~~e~ 757 (2054)
.. ...+..++... .+ .+.++|..|...+.-+..+++.
T Consensus 498 -~~-----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~ 536 (591)
T 2vgl_B 498 -ET-----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVT 536 (591)
T ss_dssp -TT-----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTH
T ss_pred -HH-----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHH
Confidence 11 11344455554 33 6889999999998877665543
No 51
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.51 E-value=1.8e-11 Score=156.43 Aligned_cols=445 Identities=14% Similarity=0.123 Sum_probs=303.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHh
Q 000145 34 PESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL 111 (2054)
Q Consensus 34 ~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~L 111 (2054)
+.+..+.|..+.+++.. +.-.++|..|+..|..+++. ++..+.. +|++.|+..|+.. |.++...+..+|.++
T Consensus 16 ~qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 16 QHTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp --CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45677889999999977 46788999999999999864 4555654 7999999999885 788888999999765
Q ss_pred -ccCchh-----------------HHHHH-hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-C
Q 000145 112 -CKDEDL-----------------RLKVL-LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-G 171 (2054)
Q Consensus 112 -s~~ee~-----------------r~~v~-~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G 171 (2054)
+.+++. ...+. ..+.|+.|+.+|..+|..+|..+++.|..|+.+ +.+...+.+... +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~---r~~~~Q~~Il~~p~ 166 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ---LGPQVQQIILVSPM 166 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---SHHHHHHHHHHSTT
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc---CcHHHHHHHHhCcc
Confidence 433221 11222 348899999999999999999999999999984 345577888855 9
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCH----HHHHHHHHHHHHHHhhc
Q 000145 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA----AAQSNAASLLARLMLAF 247 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~----evq~~A~~aL~nLs~~~ 247 (2054)
+|+.|+++|.++. ..++..++..|.+|+.++...++.+.-.|+++.|..++..... .+.+.|+.+|.+|...+
T Consensus 167 gi~~Lv~lL~d~r---E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 167 GVSRLMDLLADSR---EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp HHHHHHGGGGCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhCch---HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 9999999998765 4689999999999999999998899999999999999987543 78899999999999888
Q ss_pred CCCcchhcccchHHHHHHHhccCCCh-----hHHHH---HHHHHHHHhhc------cHHHHHHHHhcCCHHHHHHhhcCC
Q 000145 248 GDSIPTVIDSGAVKALVQLVGQNNDI-----SVRAS---AADALEALSSK------SIKAKKAVVAADGVPVLIGAIVAP 313 (2054)
Q Consensus 248 ~~~r~~i~~sGaL~~LL~LL~s~~d~-----~Vr~~---Aa~aL~nLs~~------s~e~Rk~I~eaggL~~LIeLL~s~ 313 (2054)
+.++..+.+.|+++.|..+++.+.+. ..... +..++.-|... +..+++.+.+.|+++.|++++..+
T Consensus 244 ~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 244 NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 88889999999999999999743221 01112 34455555443 346788999999999999998875
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH
Q 000145 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393 (2054)
Q Consensus 314 s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~ 393 (2054)
... ..++..|+.+++.+..+-+..-..+.+.. . +.. . ....+..
T Consensus 324 ~~p-------~~i~~~Al~tla~~irgN~~~Q~~fa~~~----------------------v---p~~---~-~~p~li~ 367 (651)
T 3grl_A 324 GVP-------ADILTETINTVSEVIRGCQVNQDYFASVN----------------------A---PSN---P-PRPAIVV 367 (651)
T ss_dssp SCC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHCE----------------------E---SSS---S-CEEHHHH
T ss_pred CCC-------HHHHHHHHHHHHHHHhCCHHHHHHHhhcc----------------------C---CCC---C-CcChHHH
Confidence 311 12556677777765543332211111100 0 000 0 0112334
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHh-hcChhhhHHHhhc------c-------hHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA------E-------AKKVLIGLITMATADVREYLILSLTKL 459 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L-~~n~~~~~~L~~~------g-------~I~~LI~LL~ssd~evq~~Aa~AL~~L 459 (2054)
.|+.++.+.....+|..++.++... ++|+..+..+... + .-..+..-+-+.++..--.|+..|.++
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hl 447 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHA 447 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHH
Confidence 5556666666667888888888776 5666555554432 0 112344444455665555577788888
Q ss_pred cccCccchhhhhc------cc-----cHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCC-CchHhhhhh
Q 000145 460 CRREVGIWEAIGK------RE-----GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGG-IPPLVQLLE 526 (2054)
Q Consensus 460 s~~s~e~r~~Ive------~g-----gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa-Ip~LV~LL~ 526 (2054)
-.++++.+..+.+ .| .++.+..++.. .++.++..=+..|+....++++.-..+...|. ++.|+..+.
T Consensus 448 l~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 448 LQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHH
Confidence 8776666543322 11 24444555543 23444444445555555555655555665553 777777664
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.47 E-value=1.2e-12 Score=153.62 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=201.3
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
..+.++.|+..++++++.+|..|+++|++++. .+.++.|+++|+++++.+|..|+++|+.+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 44678999999999999999999999999873 2467889999999999999999999999975322211
Q ss_pred HHHHHcCChHHHH-HhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000145 552 ACVESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2054)
Q Consensus 552 ~~I~e~GaI~aLV-~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d 627 (2054)
. .++.|. .+++++++.++..++++|+++.... ....++.|.++++++++.++..+..+|+.+.
T Consensus 90 ~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------- 156 (280)
T 1oyz_A 90 N------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 156 (280)
T ss_dssp H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred H------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------
Confidence 1 223333 2467889999999999999997432 3467899999999999999999988888642
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+.++.|+.+++++++.+|..|+++|.++.... ..+++.|..+++++++.+|..|+++|+++.
T Consensus 157 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 157 -------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2347999999999999999999999999985321 346789999999999999999999999986
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa 786 (2054)
. ..+++.|+.++.+.+ ++..|+.+|+.+.. +..++.|..++.+ .++++...+.
T Consensus 221 ~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 221 D--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp C--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred C--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 2 237888999998754 88899999998753 3678899998865 4677777777
Q ss_pred HHHH
Q 000145 787 RALH 790 (2054)
Q Consensus 787 ~AL~ 790 (2054)
.+|.
T Consensus 275 ~~l~ 278 (280)
T 1oyz_A 275 DKLK 278 (280)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7764
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.46 E-value=3.7e-12 Score=149.47 Aligned_cols=254 Identities=15% Similarity=0.062 Sum_probs=199.2
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--h
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--S 591 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~ 591 (2054)
..+.++.|++.|.++++.+|..|+++|+++.. .++++.|+.+++++++.+|..++++|+++..... .
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45689999999999999999999999999863 3468899999999999999999999999864321 1
Q ss_pred hhHHHHH-HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 592 ATINQLL-ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 592 ~~Ip~Lv-~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
..++.|. .++++.++.++..+.++|+.+...... .....++.|+.+++++++.+|..|+.+|.++..
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2233343 245788889999999999987532110 112358899999999999999999999998764
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
.+.++.|+.++++.++.+|..|+++|+++.... ..+++.|+.++++.++.++..|+.+|++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999985311 1367889999999999999999999998
Q ss_pred hhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHH
Q 000145 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVA 830 (2054)
Q Consensus 751 La~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~ 830 (2054)
+. .+..++.|..++.+.+ +|..|+++|.++... ..++.|..++.+.++ .....
T Consensus 219 ~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------------~~~~~L~~~l~~~~~-~~~~~ 271 (280)
T 1oyz_A 219 RK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------------TLLPVLDTMLYKFDD-NEIIT 271 (280)
T ss_dssp TT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------GGHHHHHHHHTTSSC-CHHHH
T ss_pred hC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------hhhHHHHHHHhcCCC-cHHHH
Confidence 86 4568899999998754 899999999998752 467888888865443 33455
Q ss_pred HHHHHH
Q 000145 831 DALEVV 836 (2054)
Q Consensus 831 ~AL~AL 836 (2054)
.+..+|
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.43 E-value=1.3e-09 Score=143.01 Aligned_cols=493 Identities=14% Similarity=0.096 Sum_probs=263.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 125 GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
.+....++++.+++.+.+.-+.-.+..++.. +++ ...+ ++..|.+-|.+++ +.++..|+++|+++...
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~----~~e-~~~l----~in~l~kDL~~~n---~~vr~lAL~~L~~i~~~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE----RQD-VHLL----MTNCIKNDLNHST---QFVQGLALCTLGCMGSS 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC----CHH-HHHH----HHHHHHHHHSCSS---SHHHHHHHHHHHHHCCH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC----CcH-HHHH----HHHHHHHhcCCCC---HhHHHHHHHHHHhcCCH
Confidence 4567778888889999999988888888852 222 1111 5677888887655 46889999999999742
Q ss_pred CCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHH
Q 000145 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2054)
Q Consensus 205 ~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~ 284 (2054)
.+. ...++.+.++|.+.++.+|..|+.++.+++..+++.. .+.++.+..++. +.+..++..|..+|.
T Consensus 138 ------~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~-D~d~~V~~~Al~~L~ 204 (618)
T 1w63_A 138 ------EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN-EKNHGVLHTSVVLLT 204 (618)
T ss_dssp ------HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-CCCHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-CCCHhHHHHHHHHHH
Confidence 122 2347788899999999999999999999997665432 256777778887 678899999999999
Q ss_pred HHhhccHHHHHHHHhcCCHHHHHHhhcCC-----chhhhhh-hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCch
Q 000145 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAP-----SKECMQG-QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLA 358 (2054)
Q Consensus 285 nLs~~s~e~Rk~I~eaggL~~LIeLL~s~-----s~e~~q~-~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~ 358 (2054)
.+...+++..+.+. ..++.++..+.+- .+++.-+ ..+.-.|...+..|..++...+..
T Consensus 205 ~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-------------- 268 (618)
T 1w63_A 205 EMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-------------- 268 (618)
T ss_dssp HHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH--------------
T ss_pred HHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH--------------
Confidence 99876555433332 4567776655431 1111000 001112333333333332111000
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-----ChhhHHHHHHHHHHHhhcChhhhHHHhhcch
Q 000145 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-----DNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2054)
Q Consensus 359 ~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~-----~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~ 433 (2054)
...+.++|..+++.. ....+...++.++..+..++... ..+
T Consensus 269 -----------------------------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a 314 (618)
T 1w63_A 269 -----------------------------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-----VLA 314 (618)
T ss_dssp -----------------------------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHH
T ss_pred -----------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-----HHH
Confidence 001112222222110 01123334444444332221110 012
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
++.|..++.++++.+|..|+.+|..++...++ .+
T Consensus 315 ------------------------------------------~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~ 348 (618)
T 1w63_A 315 ------------------------------------------INILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV 348 (618)
T ss_dssp ------------------------------------------HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH
T ss_pred ------------------------------------------HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH
Confidence 33444444444445555555555555442211 11
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---c
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D 590 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e 590 (2054)
. .....++.+|.+++..+|..|..+|..++.... .... ++.|...+.+.+.+.+..++.+++.++..- .
T Consensus 349 ~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 349 Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred H-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence 1 122344444455555555555555555543211 1111 234444444455555555555555555421 1
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcC
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~ 668 (2054)
...++.++++++.....+...+..++..+....+ +. ...++..|+.++.+ ..+.....++|+++..+..-
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p--~l------~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV--EM------HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC--ST------HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh--hH------HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHh
Confidence 2234555555554443333333444443332111 11 01246667777765 23444556889988886521
Q ss_pred hhh------hhhhhhCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 669 QDI------CGSLATDEIVNPCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 669 ~e~------r~~Iv~~g~V~~Lv~LL~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
... ...+....+++.|..+++ ..++.+|..+..++.++....+. .+.. +...|-....+.+.++
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~-----l~~~L~~~~~~~d~ev 564 (618)
T 1w63_A 493 VSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNR-----IKKVVSIYGSSIDVEL 564 (618)
T ss_dssp TTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHH-----HHHHHHHHTTCSCHHH
T ss_pred cccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHH-----HHHHHHHhcCCCCHHH
Confidence 000 000001124555666664 56889999999999999975443 2221 1122334456788999
Q ss_pred HHHHHHHHHHhhCChHHHHHHH
Q 000145 741 AETAVAALANLLSDPDIAAEVL 762 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~~Iv 762 (2054)
|..|...+.-+..++..+..+.
T Consensus 565 rdRA~~y~~ll~~~~~~~~~vl 586 (618)
T 1w63_A 565 QQRAVEYNALFKKYDHMRSALL 586 (618)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHh
Confidence 9999998888776665544443
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=1.7e-09 Score=141.90 Aligned_cols=433 Identities=14% Similarity=0.103 Sum_probs=295.0
Q ss_pred HHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 397 ~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
+-+.++++ .++..|+++|+++... +.. ...++.+..++.+.++.++..|+.++.++....++.. .+.+
T Consensus 114 kDL~~~n~-~vr~lAL~~L~~i~~~-~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~ 181 (618)
T 1w63_A 114 NDLNHSTQ-FVQGLALCTLGCMGSS-EMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFL 181 (618)
T ss_dssp HHHSCSSS-HHHHHHHHHHHHHCCH-HHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGG
T ss_pred HhcCCCCH-hHHHHHHHHHHhcCCH-HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHH
Confidence 33444433 4888888999988642 211 2456778889999999999999999999987655432 2567
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc---------------CCHHHHHHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLW 541 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s---------------~s~~Vre~AA~aL~ 541 (2054)
+.+..++.+.|+.++..|+.+|..++..+++....+ ...++.++++|++ .++-.+.....+|+
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~ 259 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR 259 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH
Confidence 888889999999999999999999987543321112 2467788887764 37888999999999
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhc------cCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVI 613 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLk------S~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~ 613 (2054)
.++..++... ....+.|..+++ +.+..+...+++++.++..... ..+++.|.+++.+.+++++..+.
T Consensus 260 ~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL 334 (618)
T 1w63_A 260 ILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVAL 334 (618)
T ss_dssp HHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred HhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9987654322 234455555543 2345789999999988754321 24678899999999999999999
Q ss_pred HHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH
Q 000145 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693 (2054)
Q Consensus 614 ~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~ 693 (2054)
.+++.+.... ++.++ .....++..+.+++..+|..|..+|..++. +.+... +++.|...+.+.+.
T Consensus 335 ~~L~~i~~~~--p~~~~------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~-----iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 335 TSLLKTVQTD--HNAVQ------RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRG-----MMKELLYFLDSCEP 399 (618)
T ss_dssp HHHHHHHHHH--HHHHG------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHH-----HHHHHHHHHHHCCH
T ss_pred HHHHHHHhhC--HHHHH------HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHH-----HHHHHHHHHHhCCH
Confidence 9998887432 22221 246678888999999999999999999986 222222 45888888889999
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHH
Q 000145 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTR 772 (2054)
Q Consensus 694 ~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~ 772 (2054)
.+|..+..++++++...+. .... .++.|++++......++.+++.++..+.. +|+.+.. +++.|..
T Consensus 400 e~r~~~v~~I~~la~k~~~--~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~L~~ 466 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAP--SKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQRLYK 466 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCC--CHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc--cHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHHHHH
Confidence 9999999999999974333 2222 57788899988776677777777877764 5665543 4556777
Q ss_pred HHcC--CCHHHHHHHHHHHHHhhhcCCCc---hhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCC
Q 000145 773 VLAE--GTSEGKKNASRALHQLLKHFPVG---DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLN 847 (2054)
Q Consensus 773 LL~s--~~~evr~~Aa~AL~nL~~~~~~~---e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~ 847 (2054)
++.+ .+..+.+.++|+++..+..-+.+ +.....+.....+..|..++....++..++..++.+++.+....+.
T Consensus 467 ~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 467 AILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred HHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 7764 23444557999999998631100 0000001112344555555543345566788888888877642111
Q ss_pred ccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHh
Q 000145 848 FTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 848 ~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L 888 (2054)
. .+.-...|..+..+.++++|++|.+.+.-+
T Consensus 545 -~---------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 545 -T---------VNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp -C---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -h---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 111123345556678889999999876654
No 56
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.38 E-value=7e-10 Score=141.96 Aligned_cols=406 Identities=15% Similarity=0.141 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc--CCHHHHHHHHHHHHHhcccCccc-----------------h
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGI-----------------W 467 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s--sd~evq~~Aa~AL~~Ls~~s~e~-----------------r 467 (2054)
=|..|+..|-.++.+ .+.-+...+++.|+..++. .|.++.+.+...|.++...+.+. .
T Consensus 38 DRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (651)
T 3grl_A 38 DRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFT 114 (651)
T ss_dssp HHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHH
Confidence 456777777776532 1223345678888888876 46777778888887755432211 0
Q ss_pred -hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc-hhhHHHh-hCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 468 -EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITA-AGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 468 -~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-~r~~I~~-aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
..+.+.++|+.|+.++++.+..+|.+++..|..|+...++ .+.+|.. .+|++.|+.+|.+....+|..+...|.+|+
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 2334668999999999999999999999999999987766 7888885 499999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCCh----hHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcc-----
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPS----- 607 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~----- 607 (2054)
.++.++++.++-.|+++.|+.+++.+.. .+...+...|.||.+.. +.+.++.|..+++.+.+.
T Consensus 195 ~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~ 274 (651)
T 3grl_A 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSA 274 (651)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCH
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHH
Confidence 9999999999999999999999987654 78889999999998763 456788899998755432
Q ss_pred -hHHH---HHHHHHHHHhhhcc---hHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 608 -SKAH---VIKVLGHVLTMALQ---EDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 608 -V~~~---a~~AL~~La~~~~~---~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
.... +..+++.|...... ....+..+.+.|++..|++++.++ ...++..|..+++.+..+++.++..+.+.
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 2222 34455555443221 334566688999999999998876 68899999999999999999988887754
Q ss_pred C---------CHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcccchhHHHHhc----------CChhh---HHhhhhc
Q 000145 679 E---------IVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAE----------GDVKP---LIKLAKT 735 (2054)
Q Consensus 679 g---------~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~----------gaV~~---Lv~LL~s 735 (2054)
. .+..|+.++.+. ...+|..|+.++......++. .+..+... ..+.+ |..-+-+
T Consensus 355 ~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~---~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s 431 (651)
T 3grl_A 355 NAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK---GQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFS 431 (651)
T ss_dssp EESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH---HHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTS
T ss_pred cCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH---HHHHHHHhcCCcccccCCCCCCcchhhhhhhcc
Confidence 3 233344445443 568899999999999875432 22222221 11111 3333444
Q ss_pred CCHHHHHHHHHHHHHhhC-ChHHHHHHHh-----------cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhhcCCCchhH
Q 000145 736 SSIDAAETAVAALANLLS-DPDIAAEVLL-----------EDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVL 802 (2054)
Q Consensus 736 ~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~-----------~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~~~~~~e~i 802 (2054)
.|+--.--|+.+|..+.. +++.++.+.+ .-.++.++.++..+ +++++-.=...|+--..+.| +.+
T Consensus 432 ~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV 509 (651)
T 3grl_A 432 TDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP--IAV 509 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH--HHH
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh--HHH
Confidence 555333347777777776 4555554433 11366677766543 45554433344444344332 333
Q ss_pred hhhhhhhhhHHHHHHhhc
Q 000145 803 KGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 803 ~~~i~~~g~v~~LV~LL~ 820 (2054)
.+-+.....++.|+..+.
T Consensus 510 ~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 510 THFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HHHHHSTTHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHH
Confidence 333333556788887764
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.26 E-value=9.4e-11 Score=131.66 Aligned_cols=189 Identities=22% Similarity=0.262 Sum_probs=161.9
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+.+.++.|+.+++++++.+|..++.+|..+. +...++.|++++.++++.++..+..+|+.+. .
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------------~ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------D 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------------C
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------C
Confidence 3568999999999999999999999999875 3478999999999999999999998888652 2
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
.+.++.|+.+++++++.+|..++.+|.++.. .+.++.|++++.+.++.+|..|+.+|+++.. +
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---- 142 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E---- 142 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H----
Confidence 3578999999999999999999999999864 4578999999999999999999999999853 2
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+.++.|..++++.++.++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..+
T Consensus 143 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 --------RAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 37888999999999999999999999885 245788899999999999999999999999875
Q ss_pred C
Q 000145 796 F 796 (2054)
Q Consensus 796 ~ 796 (2054)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 58
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=1.4e-10 Score=130.24 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=162.0
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+.++.|++++++++..+|..++..|..+.. .++++.|+++|.++++.+|..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999998764 2578899999999999999999999999863
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.++++.|+.+++++++.++..++++|+++. +.+.++.|++++.++++.++..+..+|+.+.
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------ 140 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG------------ 140 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------
Confidence 457899999999999999999999999885 3468999999999999999999999998752
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
....++.|+.+++++++.+|..|+.+|..+.. ..+++.|.++++++++.+|..|..+|.++..
T Consensus 141 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 141 --DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 23468999999999999999999999999854 4567889999999999999999999999976
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=2.9e-10 Score=126.72 Aligned_cols=186 Identities=23% Similarity=0.275 Sum_probs=161.0
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~ 636 (2054)
.+..+.++.+++++++.+|..++.+|..+. +...++.|++++.++++.++..+..+|+.+. ..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~ 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DE 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CH
Confidence 346788999999999999999999999875 3468999999999999999999888887652 23
Q ss_pred cchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 637 GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
..++.|+.+++++++.+|..|+++|.++.. .+.++.|++++.+.++.+|..|+++|+++..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 478999999999999999999999999864 4578999999999999999999999999853
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
.+.++.|+.++++.++.++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 237888999999999999999999999884 23478889999999999999999999998754
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=1.5e-10 Score=129.12 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=163.5
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
..+..+.++++++++++.+|..|+.+|..+.. .+.++.|+++|+++++.+|..++.+|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45778999999999999999999999998864 2467899999999999999999999999853
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.++++.|+.+++++++.+|..++++|+++. +.+.++.|.+++.+.++.++..+.++|+.+.
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 135 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 135 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 357899999999999999999999999885 3468999999999999999999999998752
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+.++.|+.+++++++.+|..|+.+|.++.. ..+++.|..+++++++.+|..|..+|.++.
T Consensus 136 ---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 23578999999999999999999999999854 346788999999999999999999999885
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.16 E-value=9.3e-09 Score=127.69 Aligned_cols=389 Identities=12% Similarity=0.045 Sum_probs=245.6
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC-CChhHHHHHHHHHHHHhhccHHHHHHHH
Q 000145 220 IIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 220 ~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~-~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
.++.-+.+++.++|..|-..|.++... ...+....|+.++.+. .+..+|..|...|+++.......+..-.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 344445567788999998888775521 0245777888888643 3678999999999998764221111000
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000145 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2054)
Q Consensus 299 eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~ 378 (2054)
......+ +.+ .
T Consensus 77 -----~~~~~~l---~~~---------~---------------------------------------------------- 87 (462)
T 1ibr_B 77 -----QQRWLAI---DAN---------A---------------------------------------------------- 87 (462)
T ss_dssp -----HHHHHTS---CHH---------H----------------------------------------------------
T ss_pred -----HhhhhcC---CHH---------H----------------------------------------------------
Confidence 0000000 000 0
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC--CHHHHHHHHHHH
Q 000145 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA--TADVREYLILSL 456 (2054)
Q Consensus 379 ~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss--d~evq~~Aa~AL 456 (2054)
...+...|+..+...+.. + ..++.+++.++....-.. .-.+.++.++..+.++ ++.++..++.+|
T Consensus 88 ---------~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 88 ---------RREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp ---------HHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 001122233333333222 4 455566666643221100 1146778899999888 889999999999
Q ss_pred HHhcccC-ccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchh-hHHHhhCCCchHhhhhhcCCHHH
Q 000145 457 TKLCRRE-VGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSK-WAITAAGGIPPLVQLLEAGSQKA 532 (2054)
Q Consensus 457 ~~Ls~~s-~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r-~~I~~aGaIp~LV~LL~s~s~~V 532 (2054)
..++... ++..... -...++.+.+++++. +..+|..|+.+++++.....++. ......-.++.+.+++.++++++
T Consensus 155 ~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 155 GYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 9988642 1111111 124567888888887 68899999999998754211110 00011112445556677789999
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------------------c--
Q 000145 533 REVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------------------D-- 590 (2054)
Q Consensus 533 re~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------------------e-- 590 (2054)
|..++++|..+...... .+..+. .+.++.++..+++.+++++..+...+..++... .
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999753322 111110 155666777888899999999999998887652 0
Q ss_pred -------hhhHHHHHHHhcC-------CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHH
Q 000145 591 -------SATINQLLALLLG-------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEY 656 (2054)
Q Consensus 591 -------~~~Ip~Lv~LL~~-------~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~ 656 (2054)
...+|.+++.+.. ++..++..+..+|+.++..... ... ...++.+...+++.++.+|+.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHHH
Confidence 2345666666653 2346788888899888754331 111 235677778888899999999
Q ss_pred HHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 657 AASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 657 Aa~ALanLas~~~-e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
|+.+|..++.+.. +.... .-..+++.+++++++.++.+|..|+++|++++.
T Consensus 386 al~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999987432 11111 125789999999999999999999999999986
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.15 E-value=6.3e-09 Score=129.24 Aligned_cols=384 Identities=13% Similarity=0.051 Sum_probs=255.1
Q ss_pred HHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHH---
Q 000145 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRA--- 552 (2054)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~--- 552 (2054)
.++.-+.+++..+|..|...|.++...+ ..+.+..|..++.++ ++.+|..|+-.|.++.......+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 3444455678889999999998876421 123445677777665 689999999999998643211000
Q ss_pred --HH------HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCC--CcchHHHHHHHHH
Q 000145 553 --CV------ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGD--SPSSKAHVIKVLG 617 (2054)
Q Consensus 553 --~I------~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~--~~~V~~~a~~AL~ 617 (2054)
.. .....-..|+..+.+.++.+ ..++.++..++.... .+.++.|++.+.++ ++.++..+..+++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 00 00112244677788888888 899999999987631 45789999999988 8888999999999
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhh-hhhhhCCCHHHHHHHhccCCHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDIC-GSLATDEIVNPCMRLLTSNTQM 694 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r-~~Iv~~g~V~~Lv~LL~dgs~~ 694 (2054)
.+....... .... .....++.++..+++. +.++|..|+.++.++...-.+.. ......-.++.+.+.+.+.++.
T Consensus 156 ~l~~~~~~~-~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 156 YICQDIDPE-QLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHSCGG-GTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHhCCch-hhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 887532111 1111 1123577888888887 79999999999999764222111 0111112466667777888999
Q ss_pred HHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH--------------
Q 000145 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-------------- 760 (2054)
Q Consensus 695 vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-------------- 760 (2054)
+|..++++|..+....+. ..+.. ...++++.++..+++.+++++..++..+.+++........
T Consensus 233 vr~~~~~~l~~l~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp HHHHHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 999999999999863222 11111 1115667777788889999999999999888753211000
Q ss_pred ----HH---hcCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCc
Q 000145 761 ----VL---LEDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2054)
Q Consensus 761 ----Iv---~~g~I~~LV~LL~s-------~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~ 826 (2054)
+. -...+|.+.+.+.+ ++..+|..|+.+|..++...+ +.+. ...++.+...+.+. +.
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-----~~~~~~l~~~l~~~--~~ 380 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-----PHVLPFIKEHIKNP--DW 380 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-----HHHHHHHHHHTTCS--SH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-----HHHHHHHHHHhcCC--Ch
Confidence 11 12356666666643 235789999999999998653 2111 34566677777654 34
Q ss_pred hhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 827 TDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 827 ~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
..+..|+.+++.++.... ...+. ...+..++.++.++.++++.+|..|..+|.+++...
T Consensus 381 ~~r~aal~~l~~l~~~~~-~~~~~------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPE-PSQLK------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHTSSSSC-TTTTC------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCc-HHHHH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 568999999999984211 01111 123557889999999999999999999999998754
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.98 E-value=5e-06 Score=109.09 Aligned_cols=512 Identities=13% Similarity=0.108 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHh
Q 000145 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2054)
Q Consensus 100 vr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~L 179 (2054)
-+....+++..+..+.+. ..+....++++.+++.+.++.+.-++..++.. +++-. .+ ++..+.+=
T Consensus 55 k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e~~-~L----~iN~l~kD 119 (621)
T 2vgl_A 55 KKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSELI-RL----INNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHHHH-HH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcHHH-HH----HHHHHHHh
Confidence 334455555554444332 25678889999999999999999999999862 22211 11 45666666
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh--ccCCHHHHHHHHHHHHHHHhhcCCCcchhccc
Q 000145 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL--SSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2054)
Q Consensus 180 L~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL--~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~s 257 (2054)
+.+++ +.++..|+++|+++.. ..+.+ ..++.+.+.+ .+.++.++..|+.++.+++..+++... ..
T Consensus 120 l~~~n---~~ir~lALr~L~~i~~------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~ 186 (621)
T 2vgl_A 120 LASRN---PTFMGLALHCIANVGS------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MG 186 (621)
T ss_dssp HHSCC---HHHHHHHHHHHHHHCC------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CC
T ss_pred cCCCC---HHHHHHHHHHhhccCC------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---ch
Confidence 66554 6789999999999965 22222 2467788888 788999999999999999976654332 24
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHH
Q 000145 258 GAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337 (2054)
Q Consensus 258 GaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanL 337 (2054)
+.++.+..+|. +.+..++..|..++..+...+++.-. ..++.+++.+. ++
T Consensus 187 ~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~------------------------~l 236 (621)
T 2vgl_A 187 DWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLS------------------------RI 236 (621)
T ss_dssp SCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHH------------------------HH
T ss_pred hHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH------------------------HH
Confidence 78899999997 67889999999998888775432110 11122221110 00
Q ss_pred hcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHH
Q 000145 338 YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2054)
Q Consensus 338 sGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~ 417 (2054)
+ . .+......+.-.++ . ++..|...++.+..
T Consensus 237 --------------l-----------------------~-~~~~~~~~~~~~~~----------~-~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 237 --------------V-----------------------T-SASTDLQDYTYYFV----------P-APWLSVKLLRLLQC 267 (621)
T ss_dssp --------------H-----------------------H-CCSSSCSTTEETTE----------E-SHHHHHHHHHHGGG
T ss_pred --------------H-----------------------h-CCCCCccchhhcCC----------C-CchHHHHHHHHHHH
Confidence 0 0 00000000000000 0 01122222222222
Q ss_pred hhc--ChhhhHHHhhcchHHHHHHHh---------ccC--CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc
Q 000145 418 LYG--NIFLSQWVSHAEAKKVLIGLI---------TMA--TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2054)
Q Consensus 418 L~~--n~~~~~~L~~~g~I~~LI~LL---------~ss--d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~ 484 (2054)
+.. ++...+.+. +.+..++..+ .+. ...+..+++.++..+... ++. + ..++..|..++.
T Consensus 268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~---~--~~~~~~L~~~L~ 339 (621)
T 2vgl_A 268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNL---L--VRACNQLGQFLQ 339 (621)
T ss_dssp SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHH---H--HHHHHHHHHHSS
T ss_pred hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HHH---H--HHHHHHHHHHhc
Confidence 221 111111111 1112222111 111 236677777887777532 111 1 246778889998
Q ss_pred CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
++++.+|..++..|..++...+. ...+ ......++..|+ ++|..+|..+...|..++. +.+-+. .+..|
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL 409 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEM 409 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHH
Confidence 88999999999999999875332 1122 234567778888 8899999999999999975 332222 35567
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchH
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~ 640 (2054)
...+.+.+.+.+..++.+++.++..- ....+..|++++......+...+...+..+....+ +. +. -++.
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~-~~-----~~~~ 481 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DV-QG-----YAAK 481 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SC-HH-----HHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hH-HH-----HHHH
Confidence 77788889999999999999988642 23467888999886655555555555555543211 11 11 1466
Q ss_pred HHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 641 SLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 641 ~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
.|+..+.++ ...+...++|+++..+..-++. ..+.-...+..+.+-+...++.+|..+..++.++....++ .+.
T Consensus 482 ~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~---~~~ 557 (621)
T 2vgl_A 482 TVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---VKA 557 (621)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG---GHH
T ss_pred HHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH---HHH
Confidence 777878765 3455567778888876421110 0000002234555555678899999999999999763322 221
Q ss_pred HHHhcCChhhHHhh-hh--cCCHHHHHHHHHHHHHhhCC
Q 000145 719 SYIAEGDVKPLIKL-AK--TSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~L-L~--s~d~~Vre~Al~AL~NLa~~ 754 (2054)
.+..+++. .. +.+.++|..|...+.-+..+
T Consensus 558 ------~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 558 ------TIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp ------HHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 23333332 33 78999999999888777554
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.91 E-value=5.3e-07 Score=118.33 Aligned_cols=429 Identities=11% Similarity=0.057 Sum_probs=276.6
Q ss_pred cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHh--ccCCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI--TMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 399 Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL--~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
+.+++ +.++--|+++++++.. ++..+ ...+.+..++ .+.++.+++.|+.++.++....++.. ...+.+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCH
T ss_pred cCCCC-HHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHH
Confidence 34443 3488889999998854 23222 3456678888 88899999999999999987654432 223678
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh----cC-------------CHHHHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----AG-------------SQKAREVAAHV 539 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~----s~-------------s~~Vre~AA~a 539 (2054)
+.+.+++.+.++.++..|+.++..++..+++.- ...++.+++.|+ .+ ++-.|......
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l 264 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence 899999999999999999999999988544311 112344444332 21 57788888888
Q ss_pred HHHHhcC-ChhHHHHHHHcCChHHHHHhh---------ccCC--hhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCC
Q 000145 540 LWILCCH-SEDIRACVESAGAVPAFLWLL---------KSGG--PKGQDASAMALTKLIRAAD--SATINQLLALLLGDS 605 (2054)
Q Consensus 540 L~nLa~~-sd~~r~~I~e~GaI~aLV~LL---------kS~~--~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~ 605 (2054)
|..++.. ++..++.+.+ .+..++..+ ++.+ ..+...++.++..+....+ ..++..|..++.+.+
T Consensus 265 l~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 265 LQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRE 342 (621)
T ss_dssp GGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSC
T ss_pred HHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 8887753 2333333221 333333322 1112 3778888888888753322 346788899998888
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~L 684 (2054)
++++..+..++..+....+..+.++ .....++..++ +++..+|..+...|..++. +.+.. .++..|
T Consensus 343 ~niry~aL~~l~~l~~~~~~~~~~~------~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL 409 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSHEAVK------THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEM 409 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHH------TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHH
T ss_pred cchHHHHHHHHHHHHhccCcHHHHH------HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHH
Confidence 9999988888888764432222322 24667778888 8899999999999999985 34433 346778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHh
Q 000145 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL 763 (2054)
Q Consensus 685 v~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~ 763 (2054)
...+.+.+...+..+..+++.++...+. ... -.+..|++++......+..+++..+..+.. +|+.|..+
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~--~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~-- 479 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAV--DYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA-- 479 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCS--STH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH--
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH--
Confidence 8888888999999999999999853222 222 256778888877555566677777777754 56655543
Q ss_pred cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 764 EDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+..|.+.+.+. ...+-+.++|+++..+..-+... .......+..+...+. .....++..++.++..+..
T Consensus 480 ---~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~----~~~p~~~l~~l~~~~~--~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 480 ---AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDP----RSSPLIQFNLLHSKFH--LCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp ---HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSST----TSCHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccC----CCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 45677777665 34566778899998875321100 0000112233443332 3455678888888887763
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhh--cCChhHHHHHHHHHHHh
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLA--EGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~--~~~~~vq~~Ai~iL~~L 888 (2054)
..+ .. .+.....|..+.. +.++++|++|.+.+.=+
T Consensus 551 ~~p---~~---------~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 551 LFP---EV---------KATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HCG---GG---------HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HCh---HH---------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 211 00 1112233334444 78899999999876543
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.84 E-value=3e-05 Score=103.87 Aligned_cols=325 Identities=15% Similarity=0.089 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc---cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT---MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~---ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
.+-.++-+||-+..+.. .+++..|-..+. ++++.++..|+.+|+.+..+... ..+..|...+
T Consensus 374 ~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHH
Confidence 56777778887743211 135566666665 56788899999999988776321 2466777777
Q ss_pred cCCC--------hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH--hcCChhHHHH
Q 000145 484 GLSS--------EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL--CCHSEDIRAC 553 (2054)
Q Consensus 484 ~s~d--------~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL--a~~sd~~r~~ 553 (2054)
.+++ +.++..|+.+|+....++.+ ...+..|..+|.+.+..+++.|+.+|+.+ +..+.
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----- 506 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----- 506 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----
T ss_pred cCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----
Confidence 6555 56888888888886543221 12456688888888887888888888866 33222
Q ss_pred HHHcCChHHHHHhh-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 554 VESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 554 I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.++..|+..+ .+.+..+++.++.+|+.+... +.+.++.+++.|. +.++.++..+..+++.-.....+
T Consensus 507 ----~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------ 575 (963)
T 4ady_A 507 ----EAIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------ 575 (963)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------
T ss_pred ----HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------
Confidence 2455566543 456778999999999988654 3456777777776 56677777766666643322222
Q ss_pred hhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhhCC
Q 000145 632 GSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~L-L~dgs~~vr~~AA~AL~nLs~s 709 (2054)
..+++.|++.+. +.++.+|..|+.+|+.+..+++ ..++.++.+ ++++++.+|..|+.||+.++.+
T Consensus 576 ----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 576 ----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred ----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 235776777654 4588999999999999876443 456777764 4678999999999999999875
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHH-HHHHHhcCcHHHHHHHHcC--CCHHHHHHH
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDI-AAEVLLEDVVSALTRVLAE--GTSEGKKNA 785 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~-r~~Iv~~g~I~~LV~LL~s--~~~evr~~A 785 (2054)
++. ..++..|..++++.+..|+..|+.+|+.+.. ..+. ..++ .+.+..|..+..+ .++..+-.+
T Consensus 643 n~~----------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 643 KGL----------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp SCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCc----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHH
Confidence 542 2267789999999999999999999999964 2221 0011 1133346666654 467777777
Q ss_pred HHHHHHhhh
Q 000145 786 SRALHQLLK 794 (2054)
Q Consensus 786 a~AL~nL~~ 794 (2054)
.-+.+-+..
T Consensus 711 ~iAqGll~a 719 (963)
T 4ady_A 711 CVAQGIMNA 719 (963)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 777766543
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.55 E-value=2.4e-05 Score=104.83 Aligned_cols=337 Identities=12% Similarity=0.072 Sum_probs=226.7
Q ss_pred HhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc---CCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 440 LITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 440 LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
.+....+..+..|+.+|+-+-..+. .+|+..|...+. ++++.++..|+.+|+.+...... .
T Consensus 366 Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~ 429 (963)
T 4ady_A 366 WLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------D 429 (963)
T ss_dssp HHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------H
T ss_pred hhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------H
Confidence 4444455667778888887766532 256777888776 56778899999999998764221 1
Q ss_pred CCchHhhhhhcCC--------HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 517 GIPPLVQLLEAGS--------QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 517 aIp~LV~LL~s~s--------~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
++..|...|.+.+ +.++..|+-+|+.....+. +..+++.|..++.+.+..+++.++.+|+.+...
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3456666776555 6788888888888643221 122466778888888877888899998877433
Q ss_pred -hchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHh
Q 000145 589 -ADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLF 665 (2054)
Q Consensus 589 -~e~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLa 665 (2054)
.+..++..|+..+. +.++.+++.+..+|+.+. +.....++.++..+.. .++.+|..++.++.--.
T Consensus 503 Tgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 34467777777654 556677888888888663 2334468888888765 58888888877765433
Q ss_pred hcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhh-hhcCCHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL-AKTSSIDAAET 743 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~L-L~s~d~~Vre~ 743 (2054)
.+ ..+ ..+|+.|++.+ .+.++.+|..|+.+|+.+..+.++ .++.++.+ +++.++.+|..
T Consensus 571 aG-TGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 571 AG-TGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------TVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp TT-SCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------SHHHHTTTGGGCSCHHHHHH
T ss_pred cC-CCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------HHHHHHHHHHhcCCHHHHHH
Confidence 21 111 23456566555 456788999999999998764332 56667764 46689999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC
Q 000145 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 744 Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
|..+|+.++.... ...++..|.++..+.++.+|+.|+.+|+.++..+.. .....+ ......|.....+.+
T Consensus 632 AalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn--a~~~rv--a~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 632 TAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE--KLNPQV--ADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT--TTCTTH--HHHHHHHHHHHHCSS
T ss_pred HHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc--ccchHH--HHHHHHHHHHHhccc
Confidence 9999999964222 123667788899999999999999999999875421 100000 123334555554434
Q ss_pred CCchhHHHHHHHHHHHh
Q 000145 824 MNGTDVADALEVVALLA 840 (2054)
Q Consensus 824 ~~~~~~~~AL~ALa~La 840 (2054)
.+...+.-+.-+.|.+-
T Consensus 702 ~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 702 QEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 45556777878888775
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.36 E-value=1.2e-06 Score=116.11 Aligned_cols=194 Identities=13% Similarity=0.060 Sum_probs=147.1
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHH-HHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM-RLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv-~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.+.++++.|++++++.|..|+++|.+|+. ++..+..+...+++.+++ ++|.+.+..+|..|+++|+||+.... .+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g--~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE--ADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC--HHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC--chH
Confidence 46778888999999999999999999998 899999999999998765 57889999999999999999987322 267
Q ss_pred hHHHHhcCChhhHHhhhhcCC---------------------HHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 717 KMSYIAEGDVKPLIKLAKTSS---------------------IDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d---------------------~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
+..++..|++++|..+++... .++.+.++.+|.+|+. +.+....+...++++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 778999999999999886421 1244567888888885 566667788889999999877
Q ss_pred cCC---CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh---HHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 775 AEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV---VLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 775 ~s~---~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~---v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
.+. ..+++..|..+|..++.++ ..+...+...+. ...+..+.. .... .+..+...|.++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~~~~~~~ll~~~~-~~~~--~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQETHVYDVLLKLAT-GTDP--RAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCSSCHHHHHHHHHH-SSCT--THHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcchHHHHHHHHHHhc-CCcH--HHHHHHHHHHhHh
Confidence 443 4689999999999999876 444444444322 233333333 3332 3666777777764
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.33 E-value=4.7e-07 Score=120.14 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=153.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH-HhhccCCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL-SLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV-~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.+.++++.|++++++.|..||.+|.+|+.++..+..+...|+|..++ .+|.+++.++|.+|+++|.||+..+ .+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchH
Confidence 46667788999999999999999999999999999999999998765 5788899999999999999999742 3566
Q ss_pred HHHHHHcCcHHHHHHhhCCCC-----------CCC-------hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN-----------KQD-------NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s-----------~~d-------~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL 225 (2054)
+..+++.|+++.|..++.... +.. ..+.++++.+|++||.+.+.....+...++++.++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788999999999999885310 000 12456788999999988776667788889999999998
Q ss_pred ccC---CHHHHHHHHHHHHHHHhhcCCCcchhcccchH---HHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 226 SSD---NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV---KALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 226 ~s~---s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL---~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
.+. ..+++..++.+|+.++..+++....+.+.+.. ..++.+.. . +...+..+++.|.|+..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHhh
Confidence 543 36799999999999997766655666555533 23333323 2 33456778888888754
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.10 E-value=7.1e-05 Score=84.77 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=162.8
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chH
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QED 627 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~-~~d 627 (2054)
.+.+..|..++.+.++.++.++..+|.++....+ .+.++.+++++++.++.+...+.+|++.+....+ +++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4577888999999999999999999999987621 4577899999999999999999999999986433 333
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
.+.+ .+.+|..+++++++-.++.++..+..+--.+ ...+++..+..++.+.+.++|..+.++|.+++
T Consensus 112 ~y~K------l~~aL~dlik~~~~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK------AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH------HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH------HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3333 4889999999999999999999999982211 12356788899999999999999999999998
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-HH-cCCCHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL-AEGTSEGKKNA 785 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~-LL-~s~~~evr~~A 785 (2054)
..... ++. -.++++-+-.+|++.|+.+++.|+.+|-.+.+.|-....+-+--.+-..++ +. ..|.|.++.+|
T Consensus 179 ~~S~D-~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 179 NSSAD-SGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp GGCSS-CCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred cccCC-HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 72111 111 234777889999999999999999999999886543211212223333443 33 57889898888
Q ss_pred HHHHHH
Q 000145 786 SRALHQ 791 (2054)
Q Consensus 786 a~AL~n 791 (2054)
-.+...
T Consensus 253 ~~v~~~ 258 (265)
T 3b2a_A 253 KKVSDL 258 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.94 E-value=1e-06 Score=92.12 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=95.3
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
...++.++.+++++++.+|..|+++|.++.. ..++.|+++|++.++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 3468889999999999999999988887643 136999999999999999999999999853 1
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
+.++.|+.+|++.++.||..|+++|+++. ..++++.|..++.+.++.+|..|+++|.++
T Consensus 73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 26889999999999999999999999885 235788999999999999999999998753
No 71
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=1.9e-06 Score=90.00 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=93.2
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
...++.++.+++++++.+|..|+++|.++.. ..++.|+++|+++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3567889999999999999999998876643 135889999999999999999999999863
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
..+++.|+.+++++++.+|..++++|+++. +.+.++.|.++++++++.++..+..+|+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 235889999999999999999999999985 4468999999999988888888777765
No 72
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.85 E-value=0.044 Score=75.39 Aligned_cols=538 Identities=11% Similarity=0.069 Sum_probs=260.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-----------cHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 000145 43 KFLEQLHANMSSPQERELITMRILTIAKA-----------KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2054)
Q Consensus 43 qlIe~L~~ssss~~ere~AL~~L~~La~~-----------~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~L 111 (2054)
.++..+...+.+...|..|.-.|.+.... +++.|..|.+ .++..+.+++..+|...+.++..+
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~------~ll~~l~~~~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK------EIVPLMISLPNNLQVQIGEAISSI 112 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH------HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555555677899999999988643 3345555533 355555556688999999999888
Q ss_pred ccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCC--CChhHHHHH--HHcCcHHHHHHh-------
Q 000145 112 CKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS--DDHVGMKIF--VTEGVVPTLWDQ------- 179 (2054)
Q Consensus 112 s~~ee~r~~v~~-~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~n--k~~~~re~I--v~aG~Vp~Lv~L------- 179 (2054)
+..+-. .. -+.++.|++.+.++++..+..++.+|..++..-.. ++...+..+ +-....+.++++
T Consensus 113 a~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~ 188 (960)
T 1wa5_C 113 ADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQ 188 (960)
T ss_dssp HHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211 01 26789999999888888899999999999863110 111122111 111234444443
Q ss_pred hCCCCCCCh------hHHHHHHHHHHHHhcCCCchhHHHHh--hCChHHHHhhhccC------C---------HHHHHHH
Q 000145 180 LNPKNKQDN------VVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD------N---------AAAQSNA 236 (2054)
Q Consensus 180 L~s~s~~d~------~V~e~Al~aL~nL~~~~e~r~~aI~e--aGGI~~LV~LL~s~------s---------~evq~~A 236 (2054)
+........ .+...++++++++....-.. .+.+ ..-++.+...+... + ..++..+
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~ 266 (960)
T 1wa5_C 189 ITANENNKASLNILFDVLLVLIKLYYDFNCQDIPE--FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSI 266 (960)
T ss_dssp TTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH--HHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHH
Confidence 333221111 22234667777665432211 1111 11123334444321 0 2467788
Q ss_pred HHHHHHHHhhcCCCcchhcccchHHHHHHHhcc----CCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ----NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 237 ~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s----~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
+.+|..+....++.-... -...+...+..+.. ..+..+...+...+..+... +..++.+...+-++.+++
T Consensus 267 ~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~---- 340 (960)
T 1wa5_C 267 QELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITE---- 340 (960)
T ss_dssp HHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHH----
Confidence 888888774332211100 11233344444421 23345555565555555432 111111100011111110
Q ss_pred CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHH
Q 000145 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIE 392 (2054)
Q Consensus 313 ~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe 392 (2054)
.+....+.++ ....+.+.+ .-+
T Consensus 341 ------------------------------------------------------~~i~~~m~~~---~~d~e~w~~-dp~ 362 (960)
T 1wa5_C 341 ------------------------------------------------------QIILPNVTLR---EEDVELFED-DPI 362 (960)
T ss_dssp ------------------------------------------------------HTHHHHHSCC---GGGTTTTTT-CHH
T ss_pred ------------------------------------------------------HHhHHhcCCC---HHHHHHHhc-CHH
Confidence 0000011110 000111111 011
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc------cCCHHHHHHHHHHHHHhcccCccc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILSLTKLCRREVGI 466 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~------ssd~evq~~Aa~AL~~Ls~~s~e~ 466 (2054)
.++..-+...+.+..|..+...|..++.... +.+ -...++.+...+. +.+...+..|..+++.++.+....
T Consensus 363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~ 439 (960)
T 1wa5_C 363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNIT 439 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCB
T ss_pred HHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccc
Confidence 1211111122223366666666666643321 111 1112233333443 344566777788888887532111
Q ss_pred hhhhh---cc-ccHH----HHHhhhcCC---ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHH
Q 000145 467 WEAIG---KR-EGIQ----LLISLLGLS---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535 (2054)
Q Consensus 467 r~~Iv---e~-ggIp----~LV~LL~s~---d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~ 535 (2054)
..... .. ...+ .++..++++ ++.+|..++++++.++..-. . .. -...++.+++.|.++++.++..
T Consensus 440 ~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~-~~-l~~~l~~l~~~L~d~~~~V~~~ 515 (960)
T 1wa5_C 440 NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K-AQ-LIELMPILATFLQTDEYVVYTY 515 (960)
T ss_dssp TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H-HH-HHHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H-HH-HHHHHHHHHHHhCCCChhHHHH
Confidence 10000 00 1112 233344555 77899999999999887421 1 11 1235667778888888999999
Q ss_pred HHHHHHHHhcCCh-------h-HHHHHHH--cCChHHHHHhhccCC---hh--HHHHHHHHHHHHHHhhch-------hh
Q 000145 536 AAHVLWILCCHSE-------D-IRACVES--AGAVPAFLWLLKSGG---PK--GQDASAMALTKLIRAADS-------AT 593 (2054)
Q Consensus 536 AA~aL~nLa~~sd-------~-~r~~I~e--~GaI~aLV~LLkS~~---~e--vq~~AA~AL~nLs~~~e~-------~~ 593 (2054)
|+.+|.+++...+ . .+..+.. ...++.|+.++.... +. ....+..++..+...... ..
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l 595 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL 595 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999976321 1 1121110 223445556666541 11 234566666666544221 23
Q ss_pred HHHHHHHhc-----CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 594 INQLLALLL-----GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 594 Ip~Lv~LL~-----~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
++.|...+. .+++.......++++.+.... .++.... .....++.+...+.....+..+.+..++..+..
T Consensus 596 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~-~~~~~~~--~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT-QRQNLPL--LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS-CGGGHHH--HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CcchHHH--HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 344444443 233445566788888876541 1111111 123356777777776666677777777777765
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.85 E-value=0.00011 Score=84.54 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=113.0
Q ss_pred chHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.++.|...+ ++.+..++..|+.++..|+..-... -.-.-..+++.++..+.+.++.+|..|..+|..+....+ .
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~ 131 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L 131 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H
Confidence 466777788 4889999999999999998632111 111224578999999999999999999999999986321 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHH--HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI--AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~--r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
...++.|...+.+.++.++..++..|..+... ++. ...+ ...++.|+.++.+.++++|..|..++..+
T Consensus 132 ------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 132 ------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 12677788999999999999999999997542 331 2222 35889999999999999999999999999
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
+..
T Consensus 204 ~~~ 206 (242)
T 2qk2_A 204 IKL 206 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.0065 Score=66.42 Aligned_cols=212 Identities=16% Similarity=0.214 Sum_probs=154.6
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
+...+..++.+|.++-..+|.+|...+.+++..-. ...+..|+.+++ ++.-.......+++|.++... ++.++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--Pe~v~~ 107 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--PELVKS 107 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--HHHHHh
Confidence 35567888999998888999999999999986532 123344555554 333333356788888887543 333332
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~ 711 (2054)
.++.+..-.+-+++.+|.+...+|..+...+|+.... ++..+..++.+.+..-|..|..-+..+..
T Consensus 108 ------vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGe--- 173 (253)
T 2db0_A 108 ------MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGE--- 173 (253)
T ss_dssp ------HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCT---
T ss_pred ------hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhc---
Confidence 3666666667789999999999999999877776544 45678888998888777777777766653
Q ss_pred cccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 000145 712 TKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2054)
Q Consensus 712 ~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~ 790 (2054)
+....+ .-.++.|+.+|++.+.-||..|+.+|.+++. +|..|..+.+ .+.=+.+.++.++......|+
T Consensus 174 ----n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 ----NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp ----TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHH
T ss_pred ----cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHH
Confidence 111222 2367889999999999999999999999997 7776655433 455577888999999999999
Q ss_pred Hhhh
Q 000145 791 QLLK 794 (2054)
Q Consensus 791 nL~~ 794 (2054)
+|.-
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.75 E-value=0.00051 Score=78.82 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=135.9
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHh-hc------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRA-AD------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~-~e------~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+.+.+.+.+.+...|..++..|..+... ++ .+.++.|.+++. +.+..++..++.+++.++..... ++ ..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~-~~- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RF-SN- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GG-HH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hH-HH-
Confidence 3477788899999999999999999876 21 356788888894 88889999999999999854322 11 11
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
.-...++.|+..+++.+..+|+.+..+|.+++... .. ...++.+...+++.++.+|..++..|..+......
T Consensus 95 -~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 -YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp -HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11235889999999999999999999999998632 11 23578888899999999999999999997653211
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
....... . ...++.|..++++.+.++|..|..+++.++
T Consensus 167 ~~~~~~~-l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKKL-L-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHHH-H-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHH-H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 0011111 2 248889999999999999999999999886
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.73 E-value=0.00019 Score=81.28 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=159.3
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
+.+..|..++...|+.++.+++.+|..+-..-++......-...++.+++++++.+..+.-.|.++|..|-.+.+-..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 45778899999999999999999999998854343333333457899999999999999999999999997754433333
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+ ...+.+|..+.+++++-.+..++..|+.+.-.. ..+++..+..++.+.+.+++..+..++.+++....+++...
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-- 188 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-- 188 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG--
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH--
Confidence 3 225678889999999999999999999993222 35678889999999999999999999998887655444332
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh--------ccCCHHHHHHH
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL--------TSNTQMVATQS 699 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL--------~dgs~~vr~~A 699 (2054)
+.++-+-.++++.|+.+++.|..++..+.+. +.. +..++.+.+++ ..|.|.++..|
T Consensus 189 ----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~--pi~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 189 ----LILDEIPSLLQNDNEFIVELALDVLEKALSF--PLL-----ENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp ----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS--CCC-----SCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--ccc-----HhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 3466677899999999999999999999872 222 44445444433 34666655543
No 77
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.69 E-value=0.077 Score=72.91 Aligned_cols=653 Identities=11% Similarity=0.056 Sum_probs=299.0
Q ss_pred HccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcC
Q 000145 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2054)
Q Consensus 93 Lks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG 171 (2054)
+.+++++.|..|-..|..+-..++ +...+..+|.. .++.+|..|+.+|.+.....-+.-+...+..++..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p~---------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASPQ---------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTSTH---------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 445666677777777777654433 33455666654 68999999999999886421000011123334444
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC------CHHHHHHHHHHHHHHHh
Q 000145 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~------s~evq~~A~~aL~nLs~ 245 (2054)
.+..+.+.-. ..+.++.....++..+....-..|.. .++.++..+.++ ++...+.++.+|..++.
T Consensus 87 ll~~l~~~~~----~~~~vr~kl~~~la~i~~~~~p~Wp~-----~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 87 ILESIVRFAG----GPKIVLNRLCISLGAYIVHMLGEWPG-----AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 5665555431 13568888888888887764224432 567788877764 46678888899988883
Q ss_pred h----cCCCcch-hcc--cchHHHHH----HHhccCCCh-------hHHHHHHHHHHHHhh--ccHHHHHHHHhcCCHHH
Q 000145 246 A----FGDSIPT-VID--SGAVKALV----QLVGQNNDI-------SVRASAADALEALSS--KSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 246 ~----~~~~r~~-i~~--sGaL~~LL----~LL~s~~d~-------~Vr~~Aa~aL~nLs~--~s~e~Rk~I~eaggL~~ 305 (2054)
. .+..+.. +.+ ...++.++ .++....+. .++..+..++..... ..+.. ....-++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 1 1111111 100 01233333 333211111 456666666655433 11111 11122333
Q ss_pred HHHhhcC----C----chhhhhhhhhhhhhhHHHHHHHHHhcCch-----h----HHHHh----hhhc---CCCCc-hhh
Q 000145 306 LIGAIVA----P----SKECMQGQRGQALQGHATRALANIYGGMP-----A----LVVYL----GELS---QSPRL-AAP 360 (2054)
Q Consensus 306 LIeLL~s----~----s~e~~q~~~~~~lqe~Al~ALanLsGgis-----~----lI~~L----~elL---~s~~~-~~~ 360 (2054)
+.. +.. + +..+.. .....+++.|+.++..+.+... . +++.+ .... ...+. .+.
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCMT-ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCCC-HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHh-hhhhhccccccccccccC-cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 333 200 0 000000 0011256677777777654211 1 11111 1111 11110 012
Q ss_pred HHHHHHHHHHHHH--Hhhc-C-C--CCCCcccchh---hHHHHHHHHcCC----CChhhHHHHHHHHHHHhhcC------
Q 000145 361 VADIIGALAYALM--VFEQ-K-S--GVDDEPFDAR---QIEDILVMLLKP----HDNKLVQERVLEAMASLYGN------ 421 (2054)
Q Consensus 361 iA~~LgaL~~~~~--~l~~-~-~--~~~~~~~~~~---gIe~~Lv~LLk~----~~~e~Vq~~Aa~AL~~L~~n------ 421 (2054)
.+..+..+..... +... . . ....+ ... .+.+.+..+... ..++.+...++..+..++..
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPE--LSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHH--HHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 2222222221110 0000 0 0 00000 011 122333333322 22344777777766665431
Q ss_pred ----hhhhHHHhh--cchHHHHHHHhccCC--------H-------HHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 422 ----IFLSQWVSH--AEAKKVLIGLITMAT--------A-------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 422 ----~~~~~~L~~--~g~I~~LI~LL~ssd--------~-------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
......+.. ...++.++..+...+ + +.+..+...|..++..-. ..+.. -..+.+.
T Consensus 390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~-~~~~~l~ 465 (971)
T 2x1g_F 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILE-ILAAMLD 465 (971)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHH-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHH-HHHHHHH
Confidence 111111111 123344444443211 1 234455556655554311 11100 1122222
Q ss_pred hhhcC-----CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh---h--cCCHHHHHHHHHHHHHHhcCChhH
Q 000145 481 SLLGL-----SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---E--AGSQKAREVAAHVLWILCCHSEDI 550 (2054)
Q Consensus 481 ~LL~s-----~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL---~--s~s~~Vre~AA~aL~nLa~~sd~~ 550 (2054)
+.+.. .+-..++.++.+++.++....+.. ...++.++.++ . +.++.+|..++++++.++..-...
T Consensus 466 ~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~ 540 (971)
T 2x1g_F 466 EAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN 540 (971)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 355688899999999987433211 12233333332 2 348999999999999886521111
Q ss_pred HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchh-------hHHHHHHHhcC--CCcchHHHHHHHHHHHHh
Q 000145 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA-------TINQLLALLLG--DSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 551 r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~-------~Ip~Lv~LL~~--~~~~V~~~a~~AL~~La~ 621 (2054)
.+.+ ...++.|+..+ + +.++..|+.++.+++...... .+..+.+++.. -+.+.+..+.+|++.++.
T Consensus 541 ~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 541 PAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp --CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 1111 22455566666 3 789999999999999764322 33445566665 345678888999998875
Q ss_pred hhcchHHHHhhhhcccchHHHHH----HhccC--CHHHHHHHHHHHHHHhhcChhh---------------hhhhhhCCC
Q 000145 622 MALQEDLVQKGSAANKGLRSLVQ----VLNSS--NEENQEYAASVLADLFSMRQDI---------------CGSLATDEI 680 (2054)
Q Consensus 622 ~~~~~d~~~~~l~~~GaI~~LV~----LLks~--s~evre~Aa~ALanLas~~~e~---------------r~~Iv~~g~ 680 (2054)
..+.. .....+ ...+++++. +++.. +++.+......+..|+..-... .-.-....+
T Consensus 616 ~~~~~-~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 692 (971)
T 2x1g_F 616 LLRPE-EIPKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692 (971)
T ss_dssp TSCTT-HHHHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT
T ss_pred hCCHH-HHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH
Confidence 43211 111111 112344443 33332 4444444454554443210000 001122356
Q ss_pred HHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC---
Q 000145 681 VNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS--- 753 (2054)
Q Consensus 681 V~~Lv~LL~d--gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~--- 753 (2054)
++.+..++.. .++.+.+.+++++++++..... .. ...+++++..+.. ..... ..+++.++.+..
T Consensus 693 ~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~------~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 693 MPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF------QPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFF 763 (971)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc------cccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC
Confidence 6777777653 4678999999999997752111 11 1134445444422 11111 235555555543
Q ss_pred -ChHHHHHHHh--cCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhhcCC
Q 000145 754 -DPDIAAEVLL--EDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 754 -~~e~r~~Iv~--~g~I~~LV~LL~s-------~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
++.....+.. .........++.. .++++++.....+.++....|
T Consensus 764 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 764 KDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 2222222211 1122333344433 378899999899999888764
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.69 E-value=0.47 Score=64.93 Aligned_cols=330 Identities=16% Similarity=0.135 Sum_probs=173.8
Q ss_pred cCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh---hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 484 GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 484 ~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL---~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
...+-..++.++.+++.++....+... ..++.++..+ .++++.+|..++++++.++..-....+.+ ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 344556788999999999875332111 1122233322 33578899999999998865211112222 5678
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADS-------ATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~-------~~Ip~Lv~LL~~~--~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
+.++..+.+ +.++..|+.++.+++..... ..+..+.+++... +.+.+..+.+|++.+....+ .+....
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~ 608 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILK 608 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 888888754 89999999999999976332 2344455666642 45677888899998875433 222222
Q ss_pred hhhcccchHHHHHHhc----cC-CHHHHHH---HHHHHHHHhhcChh-------------------hh--hhhhhCCCHH
Q 000145 632 GSAANKGLRSLVQVLN----SS-NEENQEY---AASVLADLFSMRQD-------------------IC--GSLATDEIVN 682 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLk----s~-s~evre~---Aa~ALanLas~~~e-------------------~r--~~Iv~~g~V~ 682 (2054)
. -...++++...++ .. +++.+.. ...+|..+...-.. .. ..-.....++
T Consensus 609 ~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 609 N--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp H--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 1 1223444444432 22 5555543 33334343321000 00 0011223344
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh----hc-CCHHHHHHHHHHHHHhh---
Q 000145 683 PCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA----KT-SSIDAAETAVAALANLL--- 752 (2054)
Q Consensus 683 ~Lv~LL~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL----~s-~d~~Vre~Al~AL~NLa--- 752 (2054)
.+.+++. .++..+.+.++.++..+.....+ ... ..+++++..+ .. ..+. .+..+..+.
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~--~~~------~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f 754 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD--DFA------PMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIF 754 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS--TTG------GGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcc--ccc------ccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHh
Confidence 4455553 24678888899999887652222 111 1344444433 21 2222 333333332
Q ss_pred -CChHHHHHHHh--cCcHHHHHHHHc---CCCHHHHHHHHHHHHHhhhcCCCchhHhhhhh-hhhhHHHHHHhhccCCCC
Q 000145 753 -SDPDIAAEVLL--EDVVSALTRVLA---EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDMN 825 (2054)
Q Consensus 753 -~~~e~r~~Iv~--~g~I~~LV~LL~---s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~-~~g~v~~LV~LL~sg~~~ 825 (2054)
.++.....+.. ...+.....++. +.++++++.....+..+..+.+. .+...-. -...+..++..+.. .+
T Consensus 755 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~l~~--~~ 830 (963)
T 2x19_B 755 AHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPD--LFLCERLDVKAVFQCAVLALKF--PE 830 (963)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGG--GGGCTTSCHHHHHHHHHHHTTC--SC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcH--HHcCCcccHHHHHHHHHHHcCC--CC
Confidence 22211111111 112333333333 24699999999999999987542 1111100 12344455555642 34
Q ss_pred chhHHHHHHHHHHHhh
Q 000145 826 GTDVADALEVVALLAR 841 (2054)
Q Consensus 826 ~~~~~~AL~ALa~La~ 841 (2054)
......++..+..+..
T Consensus 831 ~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 831 APTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4456777777777764
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.59 E-value=0.089 Score=72.36 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-----CCHHH----HHHHhccC---CHHHHHHHHHHHHHhhCCCCcccc
Q 000145 648 SSNEENQEYAASVLADLFSMRQDICGSLATD-----EIVNP----CMRLLTSN---TQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 648 s~s~evre~Aa~ALanLas~~~e~r~~Iv~~-----g~V~~----Lv~LL~dg---s~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
+.++..|+.|..++..++..... +...... ...+. ++..+.+. ++.+|..|+++++.++...+. .
T Consensus 416 ~~~w~~reaal~algaia~~~~~-~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNI-TNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCC-BTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H
T ss_pred chhHHHHHHHHHHHHHHHHHhcc-ccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H
Confidence 45788999999999999752110 1100010 22222 33345665 889999999999999863221 1
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh--------HH-HHHHH--hcCcHHHHHHHHcCCC---HH-
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP--------DI-AAEVL--LEDVVSALTRVLAEGT---SE- 780 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~--------e~-r~~Iv--~~g~I~~LV~LL~s~~---~e- 780 (2054)
.-..+++.++..|.+.+..|+..|+.+|.+++... +. +..+. -+..++.|..++.... +.
T Consensus 493 -----~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 493 -----QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 12236777888888888999999999999987631 11 11221 1235566666776641 11
Q ss_pred -HHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc---CCCCchhHHHHHHHHHHHhhcccCCCccCCccccc
Q 000145 781 -GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA---MDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856 (2054)
Q Consensus 781 -vr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s---g~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~ 856 (2054)
..+.+..+|..++...+ +.+.... ...++.|+..+.. ..++.......+++++.+.+.... . . ...
T Consensus 568 ~~~e~l~~al~~vv~~~~--~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~-~---~~~- 637 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSE--DSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-Q-N---LPL- 637 (960)
T ss_dssp TSCHHHHHHHHHHHHHHT--TTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-G-G---HHH-
T ss_pred cccHHHHHHHHHHHHHHH--HhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-c-h---HHH-
Confidence 34567777777765321 1121111 2344555555542 223334455677888777754100 0 0 000
Q ss_pred ccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhcc
Q 000145 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2054)
Q Consensus 857 ~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~ 891 (2054)
. .+..++.+...+......+...+.+++..+...
T Consensus 638 ~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 638 L-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp H-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 0 112345666666655556677777777776643
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.54 E-value=0.0021 Score=78.45 Aligned_cols=276 Identities=14% Similarity=0.023 Sum_probs=156.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
...++.++.+.+...++-.--+|.+++...++ .| =.+..+.+=++++++-+|-.|+++|+++.. ++.-.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~--- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ--- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH---
Confidence 34467789999988888777778777766322 22 246778888889999999999999999976 23222
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhh
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~ 593 (2054)
...+.+.+.|.+.++-+|..|+-+...|....++. + .+.+..+-+++.+.++.++.+|..+|..+...+ ...
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a 210 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLA 210 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHH
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHH
Confidence 13455777888999999999999999998765553 2 367888999999999999999999999997643 235
Q ss_pred HHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 594 INQLLALLLGD---SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 594 Ip~Lv~LL~~~---~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
+..|+.-+... ++-.+.. -++.+.......+. -.....++.+...+++.++.+...|++++..+......
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~---llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCM---MIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHH---HHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhcCCCcChHHHHH---HHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 55555555543 2222222 23322222222100 01233567777788999999999999999998652221
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
. ...++..|..++.+.++.+|-.|.+.|..+....|. . +. ..-.-+..++.+++..+..-|...|
T Consensus 284 ~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~----v~--~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 E-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--A----VT--ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred H-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--H----HH--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 1 134567778888888899999999888888764443 1 11 1233467778887777766665554
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.41 E-value=0.0025 Score=77.89 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=151.7
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r 672 (2054)
....+++++.+++...+..+.-++..++.. ..+. + =++..+..=++++++-+|-.|.++|+++.. ++..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~----i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDV----I---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCG----G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHH----H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH
Confidence 345577888888888887776666665433 1111 1 147778888889999999999999999975 3332
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+ ...+.+.+.+.+.++.+|+.|+-+..+|....++ ++ .+++..+-+++.+.++.|+-.|+.+|..+.
T Consensus 138 ~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 138 Q-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 2 3456677788899999999999999999863332 22 368899999999999999999999999887
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCC---CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~---~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~ 829 (2054)
.++. ..+..|+.-+.++ ++-.+-.-.+.+..++...+ .. .....++.+...|++. .....
T Consensus 205 ~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~-----~~~~~~~~l~~~L~~~--~~aVv 267 (355)
T 3tjz_B 205 KNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GS-----RDSPLFDFIESCLRNK--HEMVV 267 (355)
T ss_dssp TTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCCS--SHHHH
T ss_pred hhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hh-----hHHHHHHHHHHHHcCC--ChHHH
Confidence 6332 1345555555443 45555555555545444320 00 0122344555556533 34467
Q ss_pred HHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCc-hh------hhhhhc
Q 000145 830 ADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA-VL------GDFLMA 902 (2054)
Q Consensus 830 ~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~-~~------~~~~~~ 902 (2054)
.+|..++-.+...... . ......++..++.++++.+|--|+..|..+...+|. ++ .+.+.+
T Consensus 268 yEa~k~I~~l~~~~~~---~---------~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 268 YEAASAIVNLPGCSAK---E---------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHHHHHhccCCCHH---H---------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 8888877766531111 0 122345677788889999999999999999888876 33 566678
Q ss_pred ccccHHHHHHHHh
Q 000145 903 RSSSIGALADRIM 915 (2054)
Q Consensus 903 ~~~~i~~La~~il 915 (2054)
.++.|+.+|--.+
T Consensus 336 ~n~sI~t~Aittl 348 (355)
T 3tjz_B 336 ANRSIATLAITTL 348 (355)
T ss_dssp -------------
T ss_pred CcHhHHHHHHHHh
Confidence 8888888776443
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.31 E-value=0.33 Score=66.64 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---c--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhc
Q 000145 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---T--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAE 723 (2054)
Q Consensus 649 ~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL---~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~ 723 (2054)
.+...++.+..++..++.+-.+.. ...++.++.++ . +.++.+|..++++++.++..... . .. .. .
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~--~-~~-~l-~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME--N-PA-YI-P 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CH-H
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc--C-HH-HH-H
Confidence 578899999999999976432211 13344444433 3 35889999999999999862211 0 01 01 1
Q ss_pred CChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCC
Q 000145 724 GDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 724 gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~ 797 (2054)
.+++.|+..++ +.++..|+.++.+++.+ .+..+. -+..+..+..++..+ +.+.+..+..+++.+....+
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 24555666663 67899999999999842 222222 234566666777763 67899999999999987543
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0045 Score=72.02 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=132.4
Q ss_pred HHHhhccCChhHHHHHHHHHHH-HHHh-h-------c-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhc--chH-H
Q 000145 563 FLWLLKSGGPKGQDASAMALTK-LIRA-A-------D-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMAL--QED-L 628 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~n-Ls~~-~-------e-~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~--~~d-~ 628 (2054)
+...+.+.+..-|..+...|.. +... . + .+.+..|.+.+ ++.+..++..++.|++.++.... .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456678888899999999999 7643 1 1 34677788888 68888889999999999985432 111 1
Q ss_pred HHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 629 ~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+. ...++.++..+++....+++.+..++..++....+....-.-...++.|...+++.++.+|..+...|..+..
T Consensus 101 y~-----~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YV-----SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HH-----HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11 1258889999998899999999999999987322211100012467888889999999999999999999986
Q ss_pred CCCcccchhH-HHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 709 PTKTKTTNKM-SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 709 s~~~~d~~r~-~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+.. .... .......++.|.+++.+.+.+||..|..+|+.+.
T Consensus 176 ~~~~~-~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEKDG-YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCCSC-SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCc-chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22210 0111 1122568999999999999999999999998875
No 84
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0054 Score=71.32 Aligned_cols=186 Identities=8% Similarity=0.101 Sum_probs=131.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hcccCccchhhhhc-cccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhccchhhH-H
Q 000145 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGK-REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWA-I 512 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~-Ls~~s~e~r~~Ive-~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~-I 512 (2054)
+...+.+.+...+..+...|.. +..+.+.....-.+ ...+..|...+ +..+..++..|+.+|..++.+-...... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3455678888999999999998 76443332210111 23466778888 6888899999999999998743201121 2
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-- 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-- 590 (2054)
.....+|.++..+++..+.+++.+..+|..+....+.....-.=...++.|+..+++.++.+|..+..+|..+.....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223367888999999899999999998888865321100000001245677788899999999999999999986532
Q ss_pred ---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 591 ---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 591 ---------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
...+|.+.+++.+.+++++..+..+++.+...
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999988644
No 85
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.10 E-value=1.1 Score=61.42 Aligned_cols=409 Identities=12% Similarity=0.052 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc-----CCHHHHHHHHHHHHHhcccCcc------c----hhhh
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREVG------I----WEAI 470 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s-----sd~evq~~Aa~AL~~Ls~~s~e------~----r~~I 470 (2054)
.++...+.++..+........| .+.++.++.++.+ .++.....+...|..++..-.+ . +..+
T Consensus 118 ~ir~kl~~~la~i~~~~~p~~W---p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 118 IVLTRLCVALASLALSMMPDAW---PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS---TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred HHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 4777777778777544221122 3567778887765 2555666777777766532100 0 1111
Q ss_pred hcc--ccHHHHHhhhcCCCh--hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC
Q 000145 471 GKR--EGIQLLISLLGLSSE--QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 471 ve~--ggIp~LV~LL~s~d~--~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~ 546 (2054)
... ..++.+.+++...+. .+...++.++...... .... ......++.+.+.+ .+++.+..|+.++..+...
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~-~~~~--~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQL-EVPL--QDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTS-SCCG--GGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC-CCCc--ccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcc
Confidence 110 122334445544322 3666676666544331 1100 00112233344444 3677889999999988763
Q ss_pred Ch--hHHHHHHH-----cCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---------c----hhhHHHHHHHhcC---
Q 000145 547 SE--DIRACVES-----AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---------D----SATINQLLALLLG--- 603 (2054)
Q Consensus 547 sd--~~r~~I~e-----~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---------e----~~~Ip~Lv~LL~~--- 603 (2054)
.+ .....+.. -+..+.+......++.+.....+..+..+.... . ...++.+++....
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~ 349 (963)
T 2x19_B 270 PDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGH 349 (963)
T ss_dssp TTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSC
T ss_pred cccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCC
Confidence 22 11111110 111222222233445555555556665554321 0 1123334444443
Q ss_pred --CCcchHHHHHHHHHHHHhhh-c--ch--HHHHhhhh--cccchHHHHHHhccCCH---------------HHHHHHHH
Q 000145 604 --DSPSSKAHVIKVLGHVLTMA-L--QE--DLVQKGSA--ANKGLRSLVQVLNSSNE---------------ENQEYAAS 659 (2054)
Q Consensus 604 --~~~~V~~~a~~AL~~La~~~-~--~~--d~~~~~l~--~~GaI~~LV~LLks~s~---------------evre~Aa~ 659 (2054)
.++++...+..-...+.... . .. ........ -...++.++.-+..+++ +.|..+..
T Consensus 350 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 350 YPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp TTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHH
Confidence 24444444433333333210 0 00 00010000 00123333333322211 12344444
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh--
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLL----TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA-- 733 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL----~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL-- 733 (2054)
+|..++...++. +-.-..+.+...+ .+.+...++.+..+++.++.+... ... ..++.++..+
T Consensus 430 ~L~~~~~~~~~~----~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--~~~------~~l~~l~~~l~~ 497 (963)
T 2x19_B 430 TLMYVYEMLGAE----LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--NYS------DVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHTHH----HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--SCC------SHHHHHHHHGGG
T ss_pred HHHHHHHHccHH----HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--hhh------HHHHHHHHHHHh
Confidence 555554321111 0011122333334 445678899999999999874432 111 1222333322
Q ss_pred -hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhH
Q 000145 734 -KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812 (2054)
Q Consensus 734 -~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v 812 (2054)
.++++.++..++++++.++..-...... -...++.|+..+.+ +.++..|+.++.+++.+.+ +.+... ....+
T Consensus 498 l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~--~~~il 570 (963)
T 2x19_B 498 ISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPY--AANIV 570 (963)
T ss_dssp SCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTT--HHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhh--HHHHH
Confidence 3357889999999999887421101122 34678888888854 8899999999999997531 111111 14456
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 813 LTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 813 ~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
..|..++..++.....+..+.++++.+..
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 66777776544455667788888888874
No 86
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.06 E-value=0.95 Score=62.48 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhcc-
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLCK- 113 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~---s~evr~~AA~vL~~Ls~- 113 (2054)
.+.|.+.++.......++..|.+|-..|..+-..+ ++......+|.+. ++.+|.-++.+|.+...
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 56788888777777778899999999998775543 4555666677654 68999999999965432
Q ss_pred -Cch----hHHHHHhcCChHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 114 -DED----LRLKVLLGGCIPPLLSLLK-SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 114 -~ee----~r~~v~~~GaIp~LV~LL~-sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
.++ .+..+. ...+..+.+.-. .+++-++.+.+.+|..+....-+... .+.++.++.++..++ .
T Consensus 74 l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W--------p~~i~~l~~~~~~~~-~- 142 (980)
T 3ibv_A 74 WNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW--------NDFFASLQGVIAASS-Q- 142 (980)
T ss_dssp CCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC--------TTHHHHHHHHHHHHC-C-
T ss_pred CChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC--------chHHHHHHHHhcCCC-h-
Confidence 223 333332 222333333111 24667999999999998852100000 136777888776433 1
Q ss_pred hhHHHHHHHHHHHHhcC----C--C-----ch----hHHHHhhC---ChHHHHhhhc----cCCHHHHHHHHHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGD----K--D-----GY----WRATLEAG---GVDIIVGLLS----SDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~----~--e-----~r----~~aI~eaG---GI~~LV~LL~----s~s~evq~~A~~aL~nLs~ 245 (2054)
.......+++|..++.. . . .| +..+.+.. .++....+|. +.++.+...++.+|.....
T Consensus 143 ~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 143 SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 12344556666633322 0 0 11 11222210 1333333333 3567777788888776652
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
- -....+.+...++.+...+. +.+++..|.++|..+..+
T Consensus 223 w--i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 223 W--ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNK 261 (980)
T ss_dssp T--SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHS
T ss_pred h--cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHc
Confidence 1 11133455678888888876 368999999999998775
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.00 E-value=0.042 Score=60.23 Aligned_cols=215 Identities=15% Similarity=0.179 Sum_probs=146.9
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcC
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~ 668 (2054)
+.+.+..++.+|.++-..|+.++...+..+.+.-+ +.. ...+..|+.+++ ++.-......++++..++.-+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~--el~------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE--DLY------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG--GGH------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH--HHH------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 34678889999999888898888877777664322 111 123666677754 445566666778888888766
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 669 ~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
|+.... .+|.+..-.+-|++.+|.+-+.+|..+...+|. - -.++++-+..++.+.+..-+..|+..+
T Consensus 102 Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l------~~~v~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 102 PELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPM--L------MASIVRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp HHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--H------HHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChH--H------HHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 655433 456666667789999999999999999985554 2 234777899999998877677777777
Q ss_pred HHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchh
Q 000145 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2054)
Q Consensus 749 ~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~ 828 (2054)
..+..+.. +-+ .-.+|.|..+|.+++..+|..|+++|.+++... ..++ ..+..-+.-+++.. ...
T Consensus 169 ~alGen~~---~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n---pklR------kii~~kl~e~~D~S--~lv 233 (253)
T 2db0_A 169 EAMGENSF---KYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLN---DKLR------KVVIKRLEELNDTS--SLV 233 (253)
T ss_dssp HTCCTTTH---HHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC---HHHH------HHHHHHHHHCCCSC--HHH
T ss_pred HHHhccCc---ccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC---HHHH------HHHHHHHHHhcCcH--HHH
Confidence 66654221 111 236889999999999999999999999999865 3333 23333344443332 233
Q ss_pred HHHHHHHHHHHh
Q 000145 829 VADALEVVALLA 840 (2054)
Q Consensus 829 ~~~AL~ALa~La 840 (2054)
..+.-++|+.+.
T Consensus 234 ~~~V~egL~rl~ 245 (253)
T 2db0_A 234 NKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555666554
No 88
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.92 E-value=0.1 Score=65.52 Aligned_cols=348 Identities=12% Similarity=0.075 Sum_probs=193.6
Q ss_pred cCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCch---hHHHH-HhcCC-hHHHHH-hhccCCHHHHHHHHHHHHHHhcC
Q 000145 83 AQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED---LRLKV-LLGGC-IPPLLS-LLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 83 aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee---~r~~v-~~~Ga-Ip~LV~-LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
..++..++.+|+. .+.++....+..+..|..++. .+..+ ....- ...+.. .+..+++-....+...+.-++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 5678999999985 578999999998888766543 44444 33222 222333 33345666667777776666643
Q ss_pred CCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCC-hHHHHhhhcc----C--
Q 000145 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSS----D-- 228 (2054)
Q Consensus 156 ~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGG-I~~LV~LL~s----~-- 228 (2054)
+. ++......+++.. -++..|.... ....+.-++++|..|...++-|.......|. ++.++..+.. .
T Consensus 156 ~~-~~~~~l~~l~~~~---~~~~~L~~~~--~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GL-HNVKLVEKLLKNN---NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TT-CCHHHHHHHHHCH---HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CC-ccHhHHHHHhhhH---HHHHHhcccc--CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 32 2333233333211 2344444321 1223446788999998877666433333332 5555443321 1
Q ss_pred -----------CHHHHHHHHHHHHHHHhhcCCCcchhcccchH--HHHHHHhccCCChhHHHHHHHHHHHHhhccH----
Q 000145 229 -----------NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV--KALVQLVGQNNDISVRASAADALEALSSKSI---- 291 (2054)
Q Consensus 229 -----------s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL--~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~---- 291 (2054)
..+.+-+++.++|-|++..+ ..+.+...+.. +.|+.+++....+.+-+.+..++.|+...++
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~ 308 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 308 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence 23567788999999985432 33344444433 6677777655667888889999999988642
Q ss_pred HHHH-HHHhcCCHHHHHHhhcCCc-hhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHH
Q 000145 292 KAKK-AVVAADGVPVLIGAIVAPS-KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALA 369 (2054)
Q Consensus 292 e~Rk-~I~eaggL~~LIeLL~s~s-~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~ 369 (2054)
.... .+...+++ .+++.+.... .+ .+ + ..-|.. |.+. |..-.
T Consensus 309 ~~~~~~~~~~~~l-~~l~~L~~rk~~D------ed-l----~edl~~-----------L~e~-------------L~~~~ 352 (480)
T 1ho8_A 309 KVIKQLLLLGNAL-PTVQSLSERKYSD------EE-L----RQDISN-----------LKEI-------------LENEY 352 (480)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHSSCCSS------HH-H----HHHHHH-----------HHHH-------------HHHHH
T ss_pred hHHHHHHHHccch-HHHHHHhhCCCCc------HH-H----HHHHHH-----------HHHH-------------HHHHH
Confidence 1112 22223333 3333332211 00 00 0 000000 0000 00000
Q ss_pred HHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-----cChhhh----HHHhhc--chHHHHH
Q 000145 370 YALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY-----GNIFLS----QWVSHA--EAKKVLI 438 (2054)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-----~n~~~~----~~L~~~--g~I~~LI 438 (2054)
.. -. ..+++...+.. +.|. .++..| ..+.+. ..++.|+
T Consensus 353 ~~-----------lt-----sfDeY~~El~s---------------G~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~ 401 (480)
T 1ho8_A 353 QE-----------LT-----SFDEYVAELDS---------------KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401 (480)
T ss_dssp HT-----------CC-----HHHHHHHHHHH---------------TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred Hh-----------cc-----cHHHHHHHHhc---------------CCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence 00 00 11112211111 1111 111112 223222 3578899
Q ss_pred HHhcc----------CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh
Q 000145 439 GLITM----------ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 439 ~LL~s----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
.++.+ .++.+...|+.-++.+....|..+..+-+.||=..+++++.++|+++|.+|+.++..+..+
T Consensus 402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99974 3577888888999999998787787777778888899999999999999999999888764
No 89
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.85 E-value=0.0006 Score=79.23 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=131.7
Q ss_pred HhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000145 480 ISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2054)
Q Consensus 480 V~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~Ga 559 (2054)
..+++++++.+|..++..| ....|..+++++++.+|..++..| .
T Consensus 56 ~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred HHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence 3466788888888887742 123577788899999999988642 1
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
.+.|..+++++++.+|..++..+ . .+.+..++++.++.|+..+...+ ..
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~-------~~~L~~L~~D~d~~VR~~aA~~l---------------------~~ 148 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P-------LEQLEQMAADRDYLVRAYVVQRI---------------------PP 148 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C-------TGGGGGGTTCSSHHHHHHHHHHS---------------------CG
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C-------HHHHHHHHcCCCHHHHHHHHHhc---------------------CH
Confidence 24567788999999999988743 1 12466677888888887654311 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
+.+..+++++++.+|..++.. +. .+.+..++++.++.||..++.. +
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~---l------------- 194 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASR---L------------- 194 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHH---C-------------
T ss_pred HHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHh---C-------------
Confidence 234467788899999988874 11 1344567789999999988854 2
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
..+.|..++++.+..|+..++..+. .+.|..+ .+.+..||..|+..|
T Consensus 195 -----~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245888899999999999888753 2455556 888999999887654
No 90
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.85 E-value=0.17 Score=63.56 Aligned_cols=341 Identities=14% Similarity=0.078 Sum_probs=182.3
Q ss_pred chHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCc---cchhhhhccccH-H-HHHhhhcCCChhhhHHHHHHHHHHhhhc
Q 000145 432 EAKKVLIGLITM-ATADVREYLILSLTKLCRREV---GIWEAIGKREGI-Q-LLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 432 g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~---e~r~~Ive~ggI-p-~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
.+++.++.++.. .+.++.++....+..+...++ .....+.+.... . ++...+..++.-....+..++..+....
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 456777787764 457777777777777766644 111121221111 1 2222333333334455555555554322
Q ss_pred cchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcC--ChHHHHHhhcc-------------
Q 000145 506 DDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAG--AVPAFLWLLKS------------- 569 (2054)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G--aI~aLV~LLkS------------- 569 (2054)
......+...-..+-++..|.+. +.+.+..++..|..|.. .+.+|..+.+.+ .++.++.+++.
T Consensus 157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 22111110000001244555553 45667778888888876 577888876543 36666554331
Q ss_pred --C--ChhHHHHHHHHHHHHHHhhc-------hh--hHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhc--chHHHHhhh
Q 000145 570 --G--GPKGQDASAMALTKLIRAAD-------SA--TINQLLALLLG-DSPSSKAHVIKVLGHVLTMAL--QEDLVQKGS 633 (2054)
Q Consensus 570 --~--~~evq~~AA~AL~nLs~~~e-------~~--~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La~~~~--~~d~~~~~l 633 (2054)
+ ...+++.+.-+++-++..++ .. .++.|++.++. ..+.+-+-+..++.|+..... ........+
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~ 315 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 315 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence 1 24678999999999987743 12 22556666664 344555556666666654321 112222222
Q ss_pred hcccchHHHHHHhcc---CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH-HHhhCC
Q 000145 634 AANKGLRSLVQVLNS---SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL-GALSRP 709 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks---~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL-~nLs~s 709 (2054)
...++++ ++..|+. +|+++.+..-.....|... ++-+.+ .-++..... +.|..+
T Consensus 316 ~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~-----------------~~~lts----fDeY~~El~sG~L~WS 373 (480)
T 1ho8_A 316 LLGNALP-TVQSLSERKYSDEELRQDISNLKEILENE-----------------YQELTS----FDEYVAELDSKLLCWS 373 (480)
T ss_dssp HHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHH-----------------HHTCCH----HHHHHHHHHHTCCCCC
T ss_pred HHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHH-----------------HHhccc----HHHHHHHHhcCCcccC
Confidence 2233333 4444433 2666655433332222210 000110 011111111 222222
Q ss_pred CCccc-----chhHHH--HhcCChhhHHhhhhc----------CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHH
Q 000145 710 TKTKT-----TNKMSY--IAEGDVKPLIKLAKT----------SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALT 771 (2054)
Q Consensus 710 ~~~~d-----~~r~~I--~~~gaV~~Lv~LL~s----------~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV 771 (2054)
..+.+ ++-..+ -+...++.|+++|.+ .|+.+..-||.=++.++. +|..|..+.+-|+=..+.
T Consensus 374 P~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM 453 (480)
T 1ho8_A 374 PPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIM 453 (480)
T ss_dssp GGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHH
T ss_pred CCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHH
Confidence 11100 000011 122377889999974 245566678888888886 888888888889988889
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 772 RVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 772 ~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
++|.+.++++|..|..|+..+..+
T Consensus 454 ~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 454 ELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888764
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.66 E-value=0.14 Score=69.89 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=187.6
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh---hHHHHHH
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVE 555 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd---~~r~~I~ 555 (2054)
+++-+...+..-+..++..+.++.......+ ....+.+..|.+.+.+.... +.|+.++..|+.... ...-.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~- 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI- 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-
Confidence 4444444445556777777777765321111 11123445555555544233 889999999985332 122222
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~-~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
-+.++.++....+....++..|..++..+...-. ...+|.|...+... +...+..+..++..|.... ++.+.
T Consensus 94 -~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 94 -VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 2567888888888888999998888888876633 34667888878644 4567788888888876543 23322
Q ss_pred hhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
.. -...++.+-+.+.+..++++..|..++..+|.. -+++.. ...+|.|++.+.+.+. + -.|+..|+...
T Consensus 171 ~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t 239 (986)
T 2iw3_A 171 LR--MPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDI---ERFIPSLIQCIADPTE-V----PETVHLLGATT 239 (986)
T ss_dssp HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred Hh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence 22 234677788888888999999999999999873 222211 3467999999987643 2 23566666633
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~---~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa 786 (2054)
.........+ .=.+|.|..-|+.....++..++-+..||+. +|.....+ -+..+|.+.+.... .+|++|+.|.
T Consensus 240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHH
Confidence 3211111100 1134556666777888999999999999976 55443333 34677777776554 4899999999
Q ss_pred HHHHHhhhc
Q 000145 787 RALHQLLKH 795 (2054)
Q Consensus 787 ~AL~nL~~~ 795 (2054)
+++.-|...
T Consensus 317 ~a~~~l~~~ 325 (986)
T 2iw3_A 317 RALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888553
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.62 E-value=0.12 Score=70.50 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=185.2
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc-hhhHHHhhCC
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGG 517 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-~r~~I~~aGa 517 (2054)
.-+..++......++..+..+..++... .....+.+..|...+...... +.|+.++..|+..... ......-.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~ 96 (986)
T 2iw3_A 21 QKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQL 96 (986)
T ss_dssp HHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTT
T ss_pred hhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHH
Confidence 3344444455667777787776542221 122236677788888776554 8899999999864322 1112222245
Q ss_pred CchHhhhhhcCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhc-----
Q 000145 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----- 590 (2054)
Q Consensus 518 Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~-sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e----- 590 (2054)
++.++..+.+....+|..|..++..+... +...- ...+|.|+..+++. ....+..|..++..+.....
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~ 171 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence 67777777777889999888777777542 22111 33578888888765 46788888899999986631
Q ss_pred --hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 591 --SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 591 --~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
.+.+|.+.+.+.+-.++|+..+..++..++...++.|. ...++.|+..+.+++. +- .++..|+..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~~-~~----~~~~~l~~~- 238 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPTE-VP----ETVHLLGAT- 238 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTTH-HH----HHHHHHTTC-
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChhh-hH----HHHHHhhcC-
Confidence 45788899999999999999999999988877766653 3468999998877643 32 244555442
Q ss_pred hhhhhhhhh---CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 669 QDICGSLAT---DEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 669 ~e~r~~Iv~---~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
.....+.. .=.+|-|.+-|++.+..+++.++-.+.|++.-... .....-.-...+|.|-+.... .++++|+.|
T Consensus 239 -tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 239 -TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--PQVIAPFLGKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp -CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHH
T ss_pred -eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--HHHHhhhhhhhhhHHHHHhhccCCHHHHHHH
Confidence 00000000 11356666777888899999999999999982211 222222222344444443333 789999988
Q ss_pred HHHHHHh
Q 000145 745 VAALANL 751 (2054)
Q Consensus 745 l~AL~NL 751 (2054)
..|+..|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888877
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.42 E-value=4.4 Score=56.21 Aligned_cols=492 Identities=10% Similarity=0.069 Sum_probs=230.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc-----cHHHHHHHHhcC
Q 000145 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIKAKKAVVAAD 301 (2054)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~-----s~e~Rk~I~eag 301 (2054)
+++.+.+..|-..|..+- .+ .++...+..++.++.+..+|..|+..|++...+ +++.|..+.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~-~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir--- 93 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQ-DN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR--- 93 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHH-HS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH---
T ss_pred CCChHHHHHHHHHHHHHH-hC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH---
Confidence 445566777777776654 22 245666777776567889999999999998653 244555554
Q ss_pred CHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHh
Q 000145 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVF 375 (2054)
Q Consensus 302 gL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs-----Ggis~lI~~L~elL~s~~~-~~~iA~~LgaL~~~~~~l 375 (2054)
..|++.+.+.............++.....+++.+. +..+.++..+.+.++.+.. .+..-.++..++-....+
T Consensus 94 --~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 94 --NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp --HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHh
Confidence 23444443311000000000013333333444432 3466677777777652221 122233444444332211
Q ss_pred hcCCCCCC--------cccch--hhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCC
Q 000145 376 EQKSGVDD--------EPFDA--RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445 (2054)
Q Consensus 376 ~~~~~~~~--------~~~~~--~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd 445 (2054)
. ..... ..+.. ..+-..+..++.......++..+..++.+....-.. ..+.....++.+...+. .+
T Consensus 172 ~--~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l-~~ 247 (1049)
T 3m1i_C 172 S--AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM-TS 247 (1049)
T ss_dssp C--TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH-HS
T ss_pred c--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC-CC
Confidence 1 00000 01111 011233344444433344777888888765432221 12333455666663222 37
Q ss_pred HHHHHHHHHHHHHhcccCccch-----hhhhc--cccHHHHHh-h----------h---cCCChhhhHHHHHHHHHHhhh
Q 000145 446 ADVREYLILSLTKLCRREVGIW-----EAIGK--REGIQLLIS-L----------L---GLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 446 ~evq~~Aa~AL~~Ls~~s~e~r-----~~Ive--~ggIp~LV~-L----------L---~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
++.+..++.+|..+.....+.. ..+.. .+.+..+.. + + ...+.+.....+..+..++..
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 8888899999988876521110 11100 111222211 1 1 111222333344444333321
Q ss_pred c-------cchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc----CC---hhHHHHHHHcCChHHHHHhhccC
Q 000145 505 V-------DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC----HS---EDIRACVESAGAVPAFLWLLKSG 570 (2054)
Q Consensus 505 s-------~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~----~s---d~~r~~I~e~GaI~aLV~LLkS~ 570 (2054)
. ++.+..+ ...++.++.....++.++...+...+..++. .. ...+..+ ...++.++..+.-+
T Consensus 328 ~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l--~~Lv~~ll~~m~~~ 403 (1049)
T 3m1i_C 328 NRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC--SQLRLVIIENMVRP 403 (1049)
T ss_dssp HHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH--HHHHHHHHHTCCCC
T ss_pred HHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH--HHHHHHHHHhcCCC
Confidence 0 0011111 1123444444456688888888888777754 11 1112221 11233333332111
Q ss_pred -------------------Ch---hHHHHHHHHHHHHHHhhchhhHHHHHHH----hcC--CCcchHHHHHHHHHHHHhh
Q 000145 571 -------------------GP---KGQDASAMALTKLIRAADSATINQLLAL----LLG--DSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 571 -------------------~~---evq~~AA~AL~nLs~~~e~~~Ip~Lv~L----L~~--~~~~V~~~a~~AL~~La~~ 622 (2054)
+. ..+..+..+|..++......+++.+... +.+ .+...++.+..+++.++..
T Consensus 404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 00 1234566677777654333444444443 332 3445667778888877532
Q ss_pred hcchHHHHhhhhcccchHHHHHHhcc-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LLks-----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
...... ... -...++.|..+... +.+.++..+++++...+..-..+.. .=..+++.++..+.+.++.++.
T Consensus 484 ~~~~~e-~~~--l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~--~l~~vl~~ll~~l~~~~~~V~~ 558 (1049)
T 3m1i_C 484 MSEDTE-KRF--VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN--FLRTVILKLFEFMHETHEGVQD 558 (1049)
T ss_dssp SCHHHH-HHH--HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH--HHHHHHHHHHHHTTSSCHHHHH
T ss_pred cCchhh-HHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhcCCCHHHHH
Confidence 222110 000 01134444443322 2234444577777766542111111 1124567777788888999999
Q ss_pred HHHHHHHHhhCCCCcccchhHHHH--h--------cCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 698 QSARALGALSRPTKTKTTNKMSYI--A--------EGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~--~--------~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
.|+.++.+++. ..+..+. . ...+..+..++..-+.+.......+++.+.
T Consensus 559 ~A~~al~~l~~------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 559 MACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999986 2222222 0 112333334444444444555666666664
No 94
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.30 E-value=0.072 Score=63.97 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~-Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
+..+++-|.+++.+.+..+..-|.. +..|.+....|+..+|+..|++.....+...+..++.+|.+|=. ...|.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-----~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-----FVDGM 194 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-----SHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-----ccccc
Confidence 5667777888888889999999987 77889999999999999999999988899999999999999985 34566
Q ss_pred HHHH-HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCC----------hHHHHhhhc---cCCH
Q 000145 165 KIFV-TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG----------VDIIVGLLS---SDNA 230 (2054)
Q Consensus 165 e~Iv-~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGG----------I~~LV~LL~---s~s~ 230 (2054)
..++ ....|..+..++.+ ....|...|+.+|..++...++....+.++-. .+.|+.+|. +.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cchhCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666 44578888888874 34778999999999999998876655544333 788999997 6788
Q ss_pred HHHHHHHHHHHHHHhh
Q 000145 231 AAQSNAASLLARLMLA 246 (2054)
Q Consensus 231 evq~~A~~aL~nLs~~ 246 (2054)
+++.+++.++..+...
T Consensus 272 elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 272 ELLVYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988887754
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.29 E-value=0.11 Score=62.53 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=132.2
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
...++.-+.+++.+.+..+..-|..+...+.+...+++..+|+..|++...+++...+..+.+||.+|-. .. ++...
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~--~v-~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML--FV-DGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT--SH-HHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh--cc-ccccc
Confidence 3455566667788888888889998665589999999999999999999999999999999999999975 21 12222
Q ss_pred HHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-hHHHHHHHh-------c---CcHHHHHHHHc---CCCHHHHHH
Q 000145 719 SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDIAAEVLL-------E---DVVSALTRVLA---EGTSEGKKN 784 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~-------~---g~I~~LV~LL~---s~~~evr~~ 784 (2054)
.+-....|..+..++.+.+..|...|+..|.+++.. +.....+.+ + .-...|+.+|. .++.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 233455788889999998999999999999999763 323222211 1 13778899997 679999999
Q ss_pred HHHHHHHhhhcCCCch---hHhhhhhhhhhHHHHHHhhccC
Q 000145 785 ASRALHQLLKHFPVGD---VLKGNAQCRFVVLTLVDSLNAM 822 (2054)
Q Consensus 785 Aa~AL~nL~~~~~~~e---~i~~~i~~~g~v~~LV~LL~sg 822 (2054)
|...+..+...-|..+ ++.+.+...+.-..+...+...
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 9998888888766544 3444444444444455555543
No 96
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.15 E-value=0.0025 Score=74.09 Aligned_cols=186 Identities=14% Similarity=0.071 Sum_probs=130.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCC
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaI 518 (2054)
.++.+.++.++..++..+ ....+..++++++..+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 455778888888887632 123477788999999999888642 12
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHH
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLL 598 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv 598 (2054)
+.|..+++++++.+|..++..+ . .+.|..+++++++.+|..++.. +. .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------HHHHH
Confidence 5678888999999999888742 1 1235567889999999998873 21 12355
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 599 ~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
.++++.++.|+..+...+ ..+.+..+++++++++|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l---------------------~~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL---------------------PEESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS---------------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcC---------------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 677888888887654431 123344678888999999888652
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000145 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2054)
Q Consensus 679 g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~ 749 (2054)
..+.|..++.+.+..||..++..+. .+.|..| ++.+..|+..+...|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~---------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS---------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC---------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC---------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1256788889999999998886632 1334455 8889999998876654
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.11 E-value=5.2 Score=55.47 Aligned_cols=227 Identities=12% Similarity=0.084 Sum_probs=124.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.++.++..+.+++++.|..|-..|..+-+.+ ++...+..+|.. .++.+|..|+..|.+.....-+.-+..
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 3555666666666667777878887764333 344555566644 688999999999988765200001122
Q ss_pred HHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
.+..++...+..+.+....+. ...+.++.+...++..+.... +.+|. ..++.++.++.+ ++......+.+|
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 233344445555555332110 012445666677777776543 12232 246667777754 455677778888
Q ss_pred HHHHhhcCC---C-----cc-hh----cc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 241 ARLMLAFGD---S-----IP-TV----ID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 241 ~nLs~~~~~---~-----r~-~i----~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..|...-.+ . +. .+ .. ...+..+..++....+..+...+..++...... -.-..+.+.+-++.
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~ 239 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILEL 239 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHH
Confidence 777732100 0 00 01 00 123333445554444556666677777766552 22334556666777
Q ss_pred HH-HhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 306 LI-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 306 LI-eLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
++ ..+.++. ++..|+.||..+.+
T Consensus 240 l~~~~L~~~~-----------~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 240 LSTKFMTSPD-----------TRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTHHHHSHH-----------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHH-----------HHHHHHHHHHHHHc
Confidence 77 6554322 67788888887754
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.04 E-value=8.8 Score=53.23 Aligned_cols=502 Identities=11% Similarity=0.078 Sum_probs=236.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc-----cHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIK 292 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~-----s~e 292 (2054)
++.++..+-+++.+.+..|-..|..+-. ..++...+..++..+.+..+|-.|+..|++...+ +++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~----------sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD----------NPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH----------CTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHc----------CccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 3344444444455567777777765542 2235555566665566789999999999987653 234
Q ss_pred HHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHH
Q 000145 293 AKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIG 366 (2054)
Q Consensus 293 ~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs-----Ggis~lI~~L~elL~s~~~-~~~iA~~Lg 366 (2054)
.+..+. ...++.+.....++. ..+. ...++.....+++.+. ...+..+..+...++.+.. ..-.-.++.
T Consensus 88 ~~~~Ir-~~Ll~~l~~~~~~~~--~i~~--~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 88 HRIGIR-NFVVGMIISMCQDDE--VFKT--QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHSHH--HHHH--CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhcCCcc--cccc--cHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 122222222211110 0000 0012222333333332 3455666666666654322 111223333
Q ss_pred HHHHHHHHhhcCCCCC--Ccccc------hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHH
Q 000145 367 ALAYALMVFEQKSGVD--DEPFD------ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~--~~~~~------~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI 438 (2054)
.+.-....+..+.... +..+. -..+...+..++.......+...+..++......-.. ..+...+.++.++
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY-RYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHH
Confidence 3332221111000000 00000 0122234445554443444666777777776543222 2345567778888
Q ss_pred -HHhccCCHHHHHHHHHHHHHhcccCc--c---chhhhhc--cccHHHH-----------Hhhhc---CCChhhhHHHHH
Q 000145 439 -GLITMATADVREYLILSLTKLCRREV--G---IWEAIGK--REGIQLL-----------ISLLG---LSSEQHQEYAVQ 496 (2054)
Q Consensus 439 -~LL~ssd~evq~~Aa~AL~~Ls~~s~--e---~r~~Ive--~ggIp~L-----------V~LL~---s~d~~Vr~~Aa~ 496 (2054)
.++. +++.+..|+.+|..+..... + ....+.. .+.++.+ ...+. ..+.+....-+.
T Consensus 242 ~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~ 319 (1023)
T 4hat_C 242 TKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1023)
T ss_dssp THHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHH
Confidence 7764 57889999999999876321 1 1111100 0111111 11111 112333334444
Q ss_pred HHHHHhhhccchhhHHHhhCC--------CchHhhhhhcCCHHHHHHHHHHHHHHhcC--Ch-----hHHHHHHHcCChH
Q 000145 497 LIAILTEQVDDSKWAITAAGG--------IPPLVQLLEAGSQKAREVAAHVLWILCCH--SE-----DIRACVESAGAVP 561 (2054)
Q Consensus 497 aL~nLs~~s~e~r~~I~~aGa--------Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~--sd-----~~r~~I~e~GaI~ 561 (2054)
.+..++... ...+..... +..|+.+-..++.++-..+......|..+ .+ ..+..+ ...++
T Consensus 320 l~~~~~e~~---~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~--~~L~~ 394 (1023)
T 4hat_C 320 FLTTYLARN---RALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC--SQLRL 394 (1023)
T ss_dssp HHHHHHHHH---GGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH--HHHHH
T ss_pred HHHHHHHHH---HHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHH
Confidence 444444421 112211101 11222222344777767777666666431 00 111111 12233
Q ss_pred HHHHhhccCC---------------------hhHHHHH-HHHHHHHHHhhchhhHHHHHHHh----cC--CCcchHHHHH
Q 000145 562 AFLWLLKSGG---------------------PKGQDAS-AMALTKLIRAADSATINQLLALL----LG--DSPSSKAHVI 613 (2054)
Q Consensus 562 aLV~LLkS~~---------------------~evq~~A-A~AL~nLs~~~e~~~Ip~Lv~LL----~~--~~~~V~~~a~ 613 (2054)
.|+.-+.-+. ....++. -.+|..++.-.....++.+...+ .+ .+.+..+.++
T Consensus 395 vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~ 474 (1023)
T 4hat_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 474 (1023)
T ss_dssp HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3333322111 1112211 14455554433334555555544 33 3456778889
Q ss_pred HHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 614 ~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
.|+|.++...... ..... -...++.|+.++.. ....++..+++++...+.--..+. .. =..++..|++.+
T Consensus 475 ~a~gaIa~~~~~~-~e~~~--l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~-L~~vl~~L~~~l 549 (1023)
T 4hat_C 475 WAIGSISGTMSED-TEKRF--VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHTTTSSCHH-HHHHH--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HH-HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCch-hHHHH--HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HH-HHHHHHHHHHHh
Confidence 9999887432221 11111 12357778888764 233456677788877654211110 10 123455566666
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHh------cCChhhH----HhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIA------EGDVKPL----IKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~------~gaV~~L----v~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
.+.++.++..|++++.+|+. ..+..+.. ...+..+ ......-+...+..+..+++.+..
T Consensus 550 ~~~~~~v~~~A~~al~~l~~------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 550 HETHEGVQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp TCSCHHHHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHH------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77789999999999999986 33333322 1123333 333334566777788888888876
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.19 E-value=17 Score=50.52 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=116.0
Q ss_pred HHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCC-ChhHHHHHHH
Q 000145 92 ILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD-DHVGMKIFVT 169 (2054)
Q Consensus 92 LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk-~~~~re~Iv~ 169 (2054)
.+.+++.+.|..|-..|..+-..+ ++...+..+|.. .++.+|..|+..|.+.....-+. +...+ ..++
T Consensus 24 ~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~ir 93 (1049)
T 3m1i_C 24 TFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGIR 93 (1049)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHHH
Confidence 334566667777888887764332 455566666654 68999999999999886421000 12222 3333
Q ss_pred cCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 170 EGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 170 aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
...+..+...-..+. ..++.++.....++..+.... +..|. ..++.++..+. .++..++.++.+|..++..
T Consensus 94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 334444443221100 002456777777777776652 23333 24677777775 5566678888888888832
Q ss_pred cCCCc-------------chhcc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 247 FGDSI-------------PTVID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 247 ~~~~r-------------~~i~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
-.+.. ..+.. ...+..+..++....+..++..+..++..+...-+ -..+.+...++.+++.+.
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC
Confidence 11110 00111 01223334444434455677777777766544211 112333444444443222
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
. + ..++..++.+|..+.+
T Consensus 246 ~-~---------~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 246 T-S---------PDTRAITLKCLTEVSN 263 (1049)
T ss_dssp H-S---------HHHHHHHHHHHHHHHH
T ss_pred C-C---------HhHHHHHHHHHHHHHh
Confidence 1 1 1256677888777653
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.71 E-value=5.1 Score=55.30 Aligned_cols=473 Identities=11% Similarity=0.060 Sum_probs=225.5
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC---CHHHHHHHHHHHHHhccc-Ccc-
Q 000145 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRR-EVG- 465 (2054)
Q Consensus 391 Ie~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss---d~evq~~Aa~AL~~Ls~~-s~e- 465 (2054)
++..+...+.+..+...|..|-.-|..+-..++ +......++..+ +..++..++..|.+.... +++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~ 78 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNES 78 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 334443444554344477777766666644443 334455556543 688888888888765441 122
Q ss_pred ---chhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHH
Q 000145 466 ---IWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVL 540 (2054)
Q Consensus 466 ---~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL 540 (2054)
.+..+ +...++.+.+.-. .+...++...+.++..+..+.....| .+.++.++.++.+++. .......++|
T Consensus 79 ~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 79 NLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp SHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 22222 2222333333110 23445788888888888775322111 1345556666665433 2333444455
Q ss_pred HHHhcC--------Ch-------hHHHHHHHcC---ChHHHHHhhc----cCChhHHHHHHHHHHHHHHhh------chh
Q 000145 541 WILCCH--------SE-------DIRACVESAG---AVPAFLWLLK----SGGPKGQDASAMALTKLIRAA------DSA 592 (2054)
Q Consensus 541 ~nLa~~--------sd-------~~r~~I~e~G---aI~aLV~LLk----S~~~evq~~AA~AL~nLs~~~------e~~ 592 (2054)
..+..+ .+ ..++.+.+.. .++....++. +.++.++..+..++.....-. +..
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ 233 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEP 233 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcch
Confidence 433221 00 1123333221 1223333443 367778878888877765432 245
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc--cCCHHHHHHHHHHHHHHhhcChh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN--SSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk--s~s~evre~Aa~ALanLas~~~e 670 (2054)
.++.+.+++.+ ++++..+++||..+......++.....+..- .+...+..+. .+|.+..+..++.+..++..-..
T Consensus 234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~ 310 (980)
T 3ibv_A 234 CMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVA 310 (980)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 66777777765 6788999999998876544333222211110 1111111111 45777776666666555432111
Q ss_pred h-----------hhhhh--hCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC---CcccchhHHHHhcCChhhHHhh--
Q 000145 671 I-----------CGSLA--TDEIVNPCMRLLTSNTQMVATQSARALGALSRPT---KTKTTNKMSYIAEGDVKPLIKL-- 732 (2054)
Q Consensus 671 ~-----------r~~Iv--~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~---~~~d~~r~~I~~~gaV~~Lv~L-- 732 (2054)
. +.... -.+.++.++.++.++++++-..+..-+..+.... +.....+.. -...+..|+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~--~~~~l~~Ll~~li 388 (980)
T 3ibv_A 311 IKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSAS--LKEFLKSLLEAII 388 (980)
T ss_dssp HHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHH--HHHHHHHHHHHHH
T ss_pred HccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHH--HHHHHHHHHHHHH
Confidence 1 11111 1256777778887777776655444443333100 000000000 00122223322
Q ss_pred --hhcC------C------H----HHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHH-HHHc---CCCHHHHHHHHHHH
Q 000145 733 --AKTS------S------I----DAAETAVAALANLLS-DPDIAAEVLLEDVVSALT-RVLA---EGTSEGKKNASRAL 789 (2054)
Q Consensus 733 --L~s~------d------~----~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV-~LL~---s~~~evr~~Aa~AL 789 (2054)
+.-+ + . +.|......+..++. +++..-..... .+..++ +.+. +.+.+..+.+..+|
T Consensus 389 ~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l 467 (980)
T 3ibv_A 389 KKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS-AITSSLSTAATLSPENSWQLIEFALYET 467 (980)
T ss_dssp HTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 1110 0 0 122222222222211 23221111110 222222 3332 23567899999999
Q ss_pred HHhhhcCCCchhHhhhhhh--hhhHHHHHHhhccC---CCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchH
Q 000145 790 HQLLKHFPVGDVLKGNAQC--RFVVLTLVDSLNAM---DMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIE 864 (2054)
Q Consensus 790 ~nL~~~~~~~e~i~~~i~~--~g~v~~LV~LL~sg---~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~ 864 (2054)
+.++..-............ ...++-+..++.++ ..+...+..+...++..+.- ... .+..++
T Consensus 468 ~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~-----------~~~--~~~~l~ 534 (980)
T 3ibv_A 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF-----------FDY--ESAAIP 534 (980)
T ss_dssp HHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG-----------GGT--CCTTHH
T ss_pred HHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH-----------Hhc--CchhHH
Confidence 9988753321100000000 22344455554422 34556677777777766631 111 223455
Q ss_pred HHHHhh------hcCChhHHHHHHHHHHHhhccCCchh
Q 000145 865 PLVCCL------AEGPPPLQDKAIEILSRLCGDQPAVL 896 (2054)
Q Consensus 865 ~Lv~ll------~~~~~~vq~~Ai~iL~~L~~~~~~~~ 896 (2054)
+++..+ .++++.++.+|..++.++|.+.+..+
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L 572 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV 572 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence 554444 45677899999999999999876433
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.47 E-value=1.3 Score=56.08 Aligned_cols=217 Identities=13% Similarity=0.170 Sum_probs=146.3
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHh-cc------CC---HHHHHHHHHHHHH
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLL-TS------NT---QMVATQSARALGA 705 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~--g~V~~Lv~LL-~d------gs---~~vr~~AA~AL~n 705 (2054)
..+.|+.-|-++++++|-.|+.+|+.+........+..... +..-.|+-++ -| ++ ..||+.||++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777778899999999999999976432211111111 2222222222 11 11 3799999999999
Q ss_pred hhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 000145 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 706 Ls~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~A 785 (2054)
+ ...+. . ..++..|+..+.....+++..++-.|-.+ .+.... -.+.++.++..|.+.++++|..|
T Consensus 255 L-~hLp~--e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 255 I-YPLIG--P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp H-TTTSC--S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-HhCCh--h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 9 75554 2 33566666667888899999999999988 111111 35677888888999999999999
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHH
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2054)
+.+|.-++. + +.+ ...+..+.+.|.+.++-..-.......|+.|.+.... .. ..+.-++.
T Consensus 320 AetLiPIA~--p--~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a~---------~dp~LVPR 379 (800)
T 3oc3_A 320 AELLCHFPI--T--DSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-LS---------IPPERLKD 379 (800)
T ss_dssp HHHHTTSCC--S--STH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-CC---------CCSGGGGG
T ss_pred HHHhhhhcc--h--hhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-cc---------cChHHHHH
Confidence 999988772 1 111 3466778888876654444566667777777764321 11 12345777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHhh
Q 000145 866 LVCCLAEGPPPLQDKAIEILSRLC 889 (2054)
Q Consensus 866 Lv~ll~~~~~~vq~~Ai~iL~~L~ 889 (2054)
|--++.+.-+.||...+..|..++
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH
Confidence 778889999999999999998887
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.38 E-value=1.1 Score=52.63 Aligned_cols=175 Identities=9% Similarity=0.100 Sum_probs=108.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhchhhH---HHHHHHh----cCCCcchHHHHHHHHHHHHhhhcchHHHHhh-h
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAADSATI---NQLLALL----LGDSPSSKAHVIKVLGHVLTMALQEDLVQKG-S 633 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~I---p~Lv~LL----~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~-l 633 (2054)
.+...+.+.+..-+..+...|...........+ +.+.+-+ .+.+..+...+.+.|..+.......+ .+-. .
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~-y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE-TPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc-ccchHH
Confidence 344445555555555555555554433222222 2233322 25566666666666666542211100 0000 0
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
...-.++.|+.-+.++.+.+|+.+-.++..+....+ -..+.+.++.-+++.|..+|..+...+..+....
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~--- 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA--- 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc---
Confidence 012357888888888899999999988877765211 1245677888889999999999999999887511
Q ss_pred cchhHHHHhcCCh---hhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDV---KPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 714 d~~r~~I~~~gaV---~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+.. ....+ +.+.+++.+.|.+||+.|+.++..+.
T Consensus 199 -G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 -GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111 13367 89999999999999999999998664
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.06 E-value=2.1 Score=49.87 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=98.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChh-----hhhhhhhCCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQD-----ICGSLATDEIVNPCMR-LLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e-----~r~~Iv~~g~V~~Lv~-LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
.+.+...+.+.|..+.+.++.++..++..... ......-..+++.|+. .+.+..+.++..|..++..+......
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 45566678888999999999999888652111 1111222345666765 47788889999888888777641111
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHH-HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI-AAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~-r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
.. .++..+...+.+.++.++.+++..|..+... ... -....-...++.+..++.+.++.||..|..++
T Consensus 137 --~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 137 --IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp --SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 1356677788899999999999999988531 110 00111112445677788999999999999999
Q ss_pred HHhhhc
Q 000145 790 HQLLKH 795 (2054)
Q Consensus 790 ~nL~~~ 795 (2054)
..+...
T Consensus 208 ~~ly~~ 213 (278)
T 4ffb_C 208 VEIYKV 213 (278)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 888653
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.90 E-value=4.4 Score=47.54 Aligned_cols=170 Identities=15% Similarity=0.051 Sum_probs=118.7
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH----hhccCChhHHHHHHHHHHHHHHh---h--
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW----LLKSGGPKGQDASAMALTKLIRA---A-- 589 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~----LLkS~~~evq~~AA~AL~nLs~~---~-- 589 (2054)
+.+...|.+.+.+-+..+...|......+. +..+. .+..++. -+.+.++.+...+...|..+... .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 345666777788778777777776543221 22222 2333333 22367888888888888776432 1
Q ss_pred ---c---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 ---D---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 ---e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
+ ...+|.|++-+.+..+.++..+...+..+....+. ....+.+..-+++.|..+|+.++..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LKMTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1 24679999999999999999888888776543221 1246677777889999999999999999
Q ss_pred HhhcChhhhhhhhhCCCH---HHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 664 LFSMRQDICGSLATDEIV---NPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V---~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+-.... .. ...++ +.+.+++.|.+..+|..|..++..+-.
T Consensus 194 li~~~G-~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITNAG-IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHC-SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 865322 11 23478 999999999999999999999987764
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.35 E-value=8.6 Score=44.67 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=117.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCch---hHHHHH--hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh-
Q 000145 89 FISILRSGTPLAKVNVAATLSVLCKDED---LRLKVL--LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV- 162 (2054)
Q Consensus 89 LV~LLks~s~evr~~AA~vL~~Ls~~ee---~r~~v~--~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~- 162 (2054)
|-+-|.+.+...|..+..-|..+..... ...... .....+.+-+.+.+.+..+...++.+|..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567888889999999888866543211 111111 1234556667888889999999999999988642210101
Q ss_pred HHHHHHHcCcHHHHHHh-hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQ-LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~L-L~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
......-..++|.|++= +.+.. ..++..+..++..++........ .++.++..+.+.++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11122234467777764 54433 45777888888777654322101 3567778888899999999999998
Q ss_pred HHHhhcCC-Ccc-hhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 242 RLMLAFGD-SIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 242 nLs~~~~~-~r~-~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
++....+. ... ...-...++.+..++. +.+..||..|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 88743221 111 1111224455666777 5788999999988877654
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.94 E-value=9.3 Score=46.05 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=145.7
Q ss_pred hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCC
Q 000145 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG--SQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 471 ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~s 547 (2054)
...+.+..|+..+..=+.+.|+.++....++-+...+++...++. -.=|.++..|-.+ ++++--.+-..|+....+
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~- 153 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH- 153 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh-
Confidence 344677888888888888999999999999988655554433221 1124455544443 566666777778877764
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
+...+.+...+.+-.+++....++-++-..|-.++..+..... ........+|+.+++--.++++..-|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 5556666677788889999999998888888888877654321 23456678899999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
+-+...........+-+.+..-+..++.+|++.+..++..|..++.-...
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 99987766666666667777889999999999999999999988876665
No 107
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=88.76 E-value=4.5 Score=46.90 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH-HHHHHhhhcCcHHHHHH-------HHccC-----CHHHHHHHH
Q 000145 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFIS-------ILRSG-----TPLAKVNVA 105 (2054)
Q Consensus 39 ~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~-ar~~I~~~aGgVp~LV~-------LLks~-----s~evr~~AA 105 (2054)
+.|.++|..|... +.|+.|+..|.+-...-++ +-..... .|.+..|++ .+..+ ...-..+|.
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S-~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaL 77 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHS-FGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNAL 77 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHS-TTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhc-cCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHH
Confidence 4577888888544 4478775555433222122 2223334 566666655 22211 122346777
Q ss_pred HHHHHhccCchhHHHHHhcCChHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhh
Q 000145 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE-----STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180 (2054)
Q Consensus 106 ~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~se-----d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL 180 (2054)
..|..++.+++.|..+..+...--|..+|+.. -+.+|-.+++.++.|...+ +.+....+.+.++||..++.+
T Consensus 78 aLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d---d~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 78 ALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD---EQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC---CHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC---cHHHHHHHHhhhHHHHHHHHH
Confidence 77888899999999999998776677777652 3568999999999999742 556677778899999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCCc---------hhHHHHhhCChHHHHh-hhccCCHHHHHHHHHHHHHHH
Q 000145 181 NPKNKQDNVVQGFVTGALRNLCGDKDG---------YWRATLEAGGVDIIVG-LLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 181 ~s~s~~d~~V~e~Al~aL~nL~~~~e~---------r~~aI~eaGGI~~LV~-LL~s~s~evq~~A~~aL~nLs 244 (2054)
..++. --..-|+-++..+-.++.| |..++.. .+..++. +...+++....+++++-.+|+
T Consensus 155 e~Gse---lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 155 ESGSE---LSKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHSCH---HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hhccH---HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 88762 2233456666666554432 1111111 1222222 234456666666666666666
No 108
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.34 E-value=13 Score=51.68 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=120.6
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHHHHh--hchhhHHHHHHHhcCC----CcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSATINQLLALLLGD----SPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 559 aI~aLV~LLkS~~~evq~~AA~AL~nLs~~--~e~~~Ip~Lv~LL~~~----~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
++..+.++++++.....+ ++.+|...... ++.+.+..+..+++.. ++.++..+.-+++.|.+..-.. ..
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~----~~ 431 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TV 431 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CS
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc----CC
Confidence 344445566665544333 44444433322 4556777777777653 3345555666666665321000 00
Q ss_pred hhcccchHHHHH----HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHH
Q 000145 633 SAANKGLRSLVQ----VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSAR 701 (2054)
Q Consensus 633 l~~~GaI~~LV~----LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-------gs~~vr~~AA~ 701 (2054)
......++.+.+ .+..++.+.+..+..+|.|+.. ...++.|.+++.. ....++..|.+
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 011123444444 4456678888999999999976 3467777777742 23578889999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhh--hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC-CC
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA--KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GT 778 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL--~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s-~~ 778 (2054)
||.++....+. .+-+.|..+. ...+.++|..|+..|.. ++|.. ..+..+...+.. .+
T Consensus 501 ALr~~~~~~p~-----------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~~-------~~l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 501 ALRNIAKRDPR-----------KVQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPN 560 (1056)
T ss_dssp TTTTGGGTCHH-----------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSC
T ss_pred HHHHhhhhchH-----------HHHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcCH-------HHHHHHHHHHhhCch
Confidence 99999752211 1234466777 44788999988888853 23331 234556655554 57
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000145 779 SEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~ 796 (2054)
.++.......|.++....
T Consensus 561 ~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888888888888764
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.55 E-value=1.7 Score=54.99 Aligned_cols=206 Identities=12% Similarity=0.087 Sum_probs=131.8
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhch----------hhHHHHHHHh---cCC----C---cchHHHHHHHHHHH
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADS----------ATINQLLALL---LGD----S---PSSKAHVIKVLGHV 619 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~----------~~Ip~Lv~LL---~~~----~---~~V~~~a~~AL~~L 619 (2054)
...|+.-|-++..++|..|+.+|..+.+.... ...-.|+-++ +.+ | ..|++.++++|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 34455556677888888888888888765311 1111111111 111 1 24888999999988
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~A 699 (2054)
...+.+ ...+..|+..+....+++|..+.-.|.++.. .... -.++++.++..|.+.+++||..|
T Consensus 256 -~hLp~e---------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 256 -YPLIGP---------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp -TTTSCS---------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred -HhCChh---------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 544432 2245555555577789999999999998821 1111 25678888889999999999999
Q ss_pred HHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH--HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC
Q 000145 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI--DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 700 A~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~--~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~ 777 (2054)
|.+|..++. +. ... .++..+.+.|.+-++ ......+..|+.|...|.. ....+..+|.|..++++.
T Consensus 320 AetLiPIA~--p~--~l~------~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 320 AELLCHFPI--TD--SLD------LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHTTSCC--SS--THH------HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS
T ss_pred HHHhhhhcc--hh--hHH------HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC
Confidence 999999882 32 111 144445555554211 1123455566666554421 112346789999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 000145 778 TSEGKKNASRALHQLL 793 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~ 793 (2054)
-..||.++..+|..+.
T Consensus 388 ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS 403 (800)
T ss_dssp SHHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999998776
No 110
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.25 E-value=1.3e+02 Score=42.06 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=126.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.++.++..+.+++++.|..|-..|..+-..++ +...+..+|.. .++.+|-.|+..|.+.....-+.-+..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 35556666667778888888888887755443 34444555655 689999999999998875210001122
Q ss_pred HHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
.+.-++...+..+.+.-..+. ..++.+..+...++..+.... +..|. ..++-++..+.. ++......+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 233344445555555433221 124556667777777776542 12232 235556665543 456677788888
Q ss_pred HHHHhhcCCCcc-------------hhcc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 241 ARLMLAFGDSIP-------------TVID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 241 ~nLs~~~~~~r~-------------~i~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..++..-.+... .+.. ...+..+..++....+..+...+..++..+... ..-..+.+.+-++.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHH
Confidence 887743111100 0111 112233334444445556666777777777663 22234566666666
Q ss_pred HH-HhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 306 LI-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 306 LI-eLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
|+ ..+.++. ++..|+.||..+.+
T Consensus 252 L~~~~L~~~~-----------~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 252 LIYKFLNVPM-----------FRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHTSSSHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHhcCChH-----------HHHHHHHHHHHHHh
Confidence 63 5553321 67788888888764
No 111
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=85.62 E-value=0.3 Score=49.91 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCcchh-----hcCCCccceEeeccCC--CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ-----TMGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
+|.|.|+|.+|.||+. ..|.++.||++.+|+. .-++|+|+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~ 50 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 50 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC
Confidence 6899999999999985 4699999999999985 5668888753
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=84.59 E-value=5.8 Score=45.60 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=92.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH-hhccCChhHHHHHHHHHHHHHH-hhchhhHHHHHHH
Q 000145 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKLIR-AADSATINQLLAL 600 (2054)
Q Consensus 523 ~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~-LLkS~~~evq~~AA~AL~nLs~-~~e~~~Ip~Lv~L 600 (2054)
.|..++...+|..|+..|+.+ ... ...++.+.. +..+++-.+++.++.++..++. ......++.+.+.
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W 147 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEW 147 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445666789999999988877 211 123455555 5667788999999999999986 3223468888999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc-cchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~-GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv 676 (2054)
.++++..++..+.+.++.-+.....+ .+. -.++.|-.+..+++.-+|...++.|..++..+|+-....+
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~~~~k-------~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNRPYFK-------ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGSTTTT-------TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhhHHHhccchhh-------cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 99999999988777654321110000 011 1344455566667899999999999999987776554443
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.63 E-value=25 Score=40.46 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=95.2
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH-HhccCCHHHHHHHHHHHHHHhh-cChh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFS-MRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~s~evre~Aa~ALanLas-~~~e 670 (2054)
.++....|.+++..+++..++..++.+ . .. ...++.+.. +...++..+++.++.++..++. .+++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~----------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD----------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS----------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc----------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 344445566677777887777766654 1 11 113555555 5556789999999999999985 3332
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
..++.+...+++++..+|+.|+..+..-+.. +...... .-+++.|-.+..+++.-|+.....+|..
T Consensus 139 --------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp-----~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 139 --------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP-----NEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp --------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH-----HHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH-----HHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2567888899999999999988777543321 1100111 1144555667777889999999999999
Q ss_pred hhC-ChHHHHHHH
Q 000145 751 LLS-DPDIAAEVL 762 (2054)
Q Consensus 751 La~-~~e~r~~Iv 762 (2054)
++. +|+....++
T Consensus 205 ~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 205 ISKKFPDLVKIEL 217 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhhCHHHHHHHH
Confidence 997 777655443
No 114
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.26 E-value=50 Score=39.86 Aligned_cols=200 Identities=12% Similarity=0.061 Sum_probs=136.6
Q ss_pred HHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh-----ccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG-----KREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv-----e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
..+...+.+..|+..+..=+-+.+..++..+.++-....+.+...+ ....+..|+..+. ++++-..+-..|+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 3455567788888888888999999999999888776443322111 1223333444433 45566666677777
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCChHHHHHhhccCChhHHHH
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQDA 577 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~-~sd~~r~~I~e--~GaI~aLV~LLkS~~~evq~~ 577 (2054)
+..+ +.....+...+.+..+.+....++-++-..|..++..|-. |.....+.+.. .......-.++.+++--+++.
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 7773 4444445566677788888888899999999988887744 33333333332 123445567999999999999
Q ss_pred HHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHH
Q 000145 578 SAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2054)
Q Consensus 578 AA~AL~nLs~~~-----------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~ 628 (2054)
+...|+.+..+. +..-+..++.+|++.+..++..+-+....+......+..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 999999998663 234567899999999999999888887776654444333
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.59 E-value=32 Score=47.84 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=119.6
Q ss_pred HHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhhcccchHHHHHHhcc----CCHHHHHHHH
Q 000145 584 KLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNS----SNEENQEYAA 658 (2054)
Q Consensus 584 nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d~~~~~l~~~GaI~~LV~LLks----~s~evre~Aa 658 (2054)
-+........+..+.+++..++-... .+..++..+.+. .+.. ..++.+..++++ +++.+++.+.
T Consensus 348 al~~aGT~~a~~~i~~~i~~~~l~~~-ea~~~l~~~~~~~~Pt~----------e~l~~~~~l~~~~~~~~~~~l~~ta~ 416 (1056)
T 1lsh_A 348 AVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATR----------ESLSYARELLNTSFIRNRPILRKTAV 416 (1056)
T ss_dssp HHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCH----------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred HhHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHhhccCCCCH----------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence 33333344556667777776554432 345555544332 1222 246667777765 3677888888
Q ss_pred HHHHHHhhc---ChhhhhhhhhCCCHHHHHHH----hccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh
Q 000145 659 SVLADLFSM---RQDICGSLATDEIVNPCMRL----LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2054)
Q Consensus 659 ~ALanLas~---~~e~r~~Iv~~g~V~~Lv~L----L~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~ 731 (2054)
-+++.|... +...| ....++.+.+. +..++..-+..+.++|+|+.. +. .++.|..
T Consensus 417 La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~------------~l~~l~~ 478 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN------------SIKKIQR 478 (1056)
T ss_dssp HHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG------------GHHHHHT
T ss_pred HHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh------------HHHHHHH
Confidence 777777542 11111 22334555544 456777778889999999974 32 5566666
Q ss_pred hhhc-------CCHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhhcCCCchh
Q 000145 732 LAKT-------SSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVL--AEGTSEGKKNASRALHQLLKHFPVGDV 801 (2054)
Q Consensus 732 LL~s-------~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL--~s~~~evr~~Aa~AL~nL~~~~~~~e~ 801 (2054)
++.. ....++..|+++|.+++.. |.. +-+.+.++. ...++++|..|...|.+- .|.
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~--- 544 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS--- 544 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC---
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC---
Confidence 6642 3467888999999999853 321 233455666 445899999888888532 221
Q ss_pred HhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 802 LKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 802 i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
...+..+...+.. +...+........+.+++.
T Consensus 545 -------~~~l~~ia~~l~~-E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 545 -------VALVSMVAVRLRR-EPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp -------HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHh
Confidence 2234555555542 2334445555555555553
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.10 E-value=6.8 Score=49.19 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCC
Q 000145 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDS 605 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~ 605 (2054)
.+++..+.-|+..+...-.+-++.++ .++.+++.+..+++..+|..|...|..++.+.. .++...|.+||..++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD 113 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence 45789999999999988777666544 478999999999999999999999999998621 457788999999988
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
+.-...+..+|..+....+ .+.+..|..-+.++++.+|+.+..-|..=
T Consensus 114 ~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8777777788777654322 12455566655567888998877766543
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.19 E-value=13 Score=46.84 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=108.1
Q ss_pred cCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH
Q 000145 569 SGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2054)
Q Consensus 569 S~~~evq~~AA~AL~nLs~~-~--e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L 645 (2054)
.+++..+.-|+..+..+..+ + ...++..++.|..+++..|+.++.+.|-.++.. +.+.+ ..+.|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~k------iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPR------VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhh------HHHHHHHH
Confidence 45788899999998888766 2 356889999999999999999887777666533 22322 48899999
Q ss_pred hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCC
Q 000145 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2054)
Q Consensus 646 Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~ga 725 (2054)
|.++++.-....-.+|..|...++ .+.+..+...+..+++.+|+.+..=|..-....+.. ... .-.+.-+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~-~l~-~E~E~~i 178 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDE-VLT-KEVEELI 178 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTT-TSC-HHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchh-hcc-HHHHHHH
Confidence 999988888888888888876443 244566666666678888887666554333211110 111 1122234
Q ss_pred hhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 726 VKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 726 V~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
+..+.+.|.+-+.+--.-.+..|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 55566677665555555566666555
No 118
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.92 E-value=0.74 Score=47.95 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=36.3
Q ss_pred cCCCceEEEEEcCCcchhhc-CCCccceEeeccCCCCcccceeee
Q 000145 2007 CLPGCLTVTIKRGNNLKQTM-GTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2007 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
+.+|.|.|+|.+|.||+..- |..+.||++.+|+. -++|+|+.+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~-~~kT~v~~~ 47 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDE-KKKTKKVDN 47 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSC-EEECCCCCS
T ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCE-eEEeeeecC
Confidence 57899999999999998522 88999999999964 588998754
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=79.56 E-value=17 Score=43.42 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChh
Q 000145 650 NEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727 (2054)
Q Consensus 650 s~evre~Aa~ALanLas~~~e~r~~Iv~~--g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~ 727 (2054)
.+..+..+++.++|++. ++..+..+... .+++.+...+.+.+..++..++..+.|++........... ......
T Consensus 161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~---~~~ll~ 236 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG---KAQCLS 236 (304)
T ss_dssp CHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH---HHHHHH
T ss_pred ChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH---HHHHHH
Confidence 56679999999999998 56666666543 3455555555667889999999999999862111000000 111333
Q ss_pred hHHhhhhc-CCHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHHHcC-CCHHHHH
Q 000145 728 PLIKLAKT-SSIDAAETAVAALANLLSDP-DIAAEVLLEDVVSALTRVLAE-GTSEGKK 783 (2054)
Q Consensus 728 ~Lv~LL~s-~d~~Vre~Al~AL~NLa~~~-e~r~~Iv~~g~I~~LV~LL~s-~~~evr~ 783 (2054)
.+..+++. .+.+..-.++.||++|...+ +..+....-+....+-++... ..+++.+
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~ 295 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE 295 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence 34444443 67888889999999998743 333333233333333334333 2444444
No 120
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=76.94 E-value=1.2e+02 Score=35.40 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCC-----HHHHHHHHHHHHHHhcC-ChhHHHHHHHcCChHHHHH
Q 000145 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS-----QKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLW 565 (2054)
Q Consensus 492 ~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s-----~~Vre~AA~aL~nLa~~-sd~~r~~I~e~GaI~aLV~ 565 (2054)
.+|+..|..++. +++.|..+.+++..--|...|+..+ +-.|-.+.++++.|... +.+.-..+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 455666666776 6999999999977777777786553 56799999999999763 4456666678899999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH
Q 000145 566 LLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2054)
Q Consensus 566 LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L 645 (2054)
.++.++.-.+.-|...+.++-.++. ++..+. ...+-...+..+|+++ +..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~--GL~YiC-----~t~eRF~av~~vL~~m----------------------V~~l 203 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDT--GLAYIC-----QTYERFSHVAMILGKM----------------------VLQL 203 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHH--HHHHHT-----SSHHHHHHHHHHHHHH----------------------HHHT
T ss_pred HHhhccHHHHHHHHHHHHHHhccch--hHHHHH-----ccHHHHHHHHHHHHHH----------------------HHHH
Confidence 9999999999999998888876532 110000 0111111122222221 1124
Q ss_pred hccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 646 LNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 646 Lks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
.+..++....+..++...|+. ++..|..+
T Consensus 204 ~~~ps~RLLKhiircYlRLsd-n~rar~aL 232 (268)
T 2fv2_A 204 SKEPSARLLKHVVRCYLRLSD-NPRAREAL 232 (268)
T ss_dssp TTSCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 456788888899999999887 55555443
No 121
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.55 E-value=1.3 Score=46.46 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=35.5
Q ss_pred CCCceEEEEEcCCcchhh---------cCCCccceEeeccCC--CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT---------MGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
-.|.|.|+|.++.||+.. .|..+.||++.++++ .-++|+|+.+
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~ 77 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC
Confidence 468999999999999874 467899999999864 4678998764
No 122
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=75.39 E-value=0.64 Score=48.52 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=36.6
Q ss_pred hhcCCCceEEEEEcCCcchh--hcCCCccceEeeccCCC-------------Ccccceee
Q 000145 2005 LHCLPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP-------------PRQTKVIF 2049 (2054)
Q Consensus 2005 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 2049 (2054)
+....|.|+|+|.+|.||+- ..|..+.||++.+++++ -++|+|+.
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~ 72 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccC
Confidence 34448999999999999975 35778999999999875 36888865
No 123
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=73.32 E-value=1.1 Score=46.70 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccCC----CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
-+|.|.|+|.++.||+.. .|..+.||++.++++ .-++|||+.+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~ 75 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC
Confidence 578999999999999854 577899999999974 4567888753
No 124
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=72.39 E-value=1.7 Score=44.75 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeecc----CCCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIG----NGPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+. ..|.++.||++.++ +...++|+|+.+
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~ 62 (137)
T 3rdl_A 15 DEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS 62 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcC
Confidence 5899999999999975 67889999999996 455678888753
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=71.99 E-value=1.2e+02 Score=37.29 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHH--HHHHhhhcCcHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 000145 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKEA--RLLIGSHAQAMPLFISILRS-----------GTPLAKVNVAATL 108 (2054)
Q Consensus 42 ~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~a--r~~I~~~aGgVp~LV~LLks-----------~s~evr~~AA~vL 108 (2054)
..+|+.|+... ........+..|..-.+..+.. +.++ .+|+..|+.+|.. .+...+..++++|
T Consensus 69 ~~yi~~L~~~~-~~~kl~~~L~sL~v~Lrt~~~sWV~~F~---~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CL 144 (383)
T 3eg5_B 69 MMYIQELRSGL-RDMHLLSCLESLRVSLTSHPVSWVQTFG---AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL 144 (383)
T ss_dssp HHHHHHHTTTC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cchhHHHHHHHHHHHHhhCccHHHHHHH---HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 34566665542 3332234555565554554333 3343 3689999999852 2347778899999
Q ss_pred HHhccCchhHHHHHhc-CChHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 000145 109 SVLCKDEDLRLKVLLG-GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 109 ~~Ls~~ee~r~~v~~~-GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
+.+.........+... .+|..|...|.++.+.++..++..|..+|..
T Consensus 145 kalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~ 192 (383)
T 3eg5_B 145 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 192 (383)
T ss_dssp HHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 9988777666666654 7899999999999999999999999999974
No 126
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=71.99 E-value=1.2 Score=48.74 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=37.0
Q ss_pred hhcCCCceEEEEEcCCcch--hhcCCCccceEeeccCCCCcccceeee
Q 000145 2005 LHCLPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2005 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
..|..|.|.|+|.++.||+ ...|..+.||++.+|+ .-++|||+..
T Consensus 31 ~~~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~ 77 (173)
T 2nq3_A 31 SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNN 77 (173)
T ss_dssp CCSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSS
T ss_pred ccCCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCC
Confidence 4577899999999999997 4556789999999987 7788998764
No 127
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=70.51 E-value=1.9 Score=45.42 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccC----CCCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
.+|.|.|+|.++.||+. ..|..+.||++.+++ ...++|||+.+
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~ 77 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC
Confidence 47999999999999974 457789999999997 45678888764
No 128
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=70.30 E-value=2.3 Score=44.21 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred hcCCCceEEEEEcCCcchhh-cCCCccceEeeccC----CCCcccceeee
Q 000145 2006 HCLPGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2006 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
+--+|.|.|+|.+|.||+.. .|..+.||++.+.+ ..-++|+|+.+
T Consensus 16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~ 65 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRK 65 (134)
T ss_dssp EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCS
T ss_pred eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcC
Confidence 34689999999999999853 46679999999943 34568998754
No 129
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=68.61 E-value=1.8 Score=44.53 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccC-CCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGN-GPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2054)
+..|.|+|.+|.||+- ..|..+.||++.+++ +...+|+|+..
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~ 48 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN 48 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCC
Confidence 4579999999999964 568889999999975 67788988753
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=67.97 E-value=74 Score=44.91 Aligned_cols=200 Identities=14% Similarity=0.036 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh--ccCChhHHHHHHHHHHHHHHhh-------c-hhhHHHHH
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--KSGGPKGQDASAMALTKLIRAA-------D-SATINQLL 598 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL--kS~~~evq~~AA~AL~nLs~~~-------e-~~~Ip~Lv 598 (2054)
+...|..|-..|..+-.+ .++...+...+ .+.++.+|..|+..|.+..... + ..+-..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 677888888888777432 23455554433 4567899999999999886541 1 12223455
Q ss_pred HHhcC-------CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh--
Q 000145 599 ALLLG-------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ-- 669 (2054)
Q Consensus 599 ~LL~~-------~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~-- 669 (2054)
+.+.. ....++.....+++.++...-. +. =.+.++.|++++++ ++..++.+..+|..|+..-.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~------Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH------WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT------CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc------chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence 55442 2455677777777777643211 11 13568888888876 66778889999999875200
Q ss_pred ----hhhh-----hhhhC--CCHHHHHHHhcc-------------------CCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 670 ----DICG-----SLATD--EIVNPCMRLLTS-------------------NTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 670 ----e~r~-----~Iv~~--g~V~~Lv~LL~d-------------------gs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
..+. .+.+. .++..+..++++ ++..++..+..++.+.....+. ..
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-----~~ 242 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-----SH 242 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-----HH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-----HH
Confidence 0111 11111 223333444432 1234556667777666543322 11
Q ss_pred HHhc--CChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 720 YIAE--GDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 720 I~~~--gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
+.+. ..+..++.++. +++++..|+.+|..+..
T Consensus 243 i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHT
T ss_pred HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 2222 25555666555 46789999999999986
No 131
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=67.63 E-value=1.8 Score=44.66 Aligned_cols=41 Identities=29% Similarity=0.568 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.|.|.|+|.+|.||+. ..|..+.||++.+|+ ...+|+|+.+
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~ 54 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYK 54 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSS
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecC
Confidence 5889999999999984 357889999999987 4678998754
No 132
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=67.14 E-value=1.8 Score=45.40 Aligned_cols=41 Identities=17% Similarity=0.491 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.|.|.|+|.+|.||+. ..|.++.||++.+|+ ..++|+|+.+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~ 58 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYG 58 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCCS
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-EEEECCccCC
Confidence 5899999999999965 578999999999976 6778988753
No 133
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=67.05 E-value=2.3 Score=44.96 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccC--CCCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGN--GPPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~ 2050 (2054)
-.|.|+|+|.++.||+.. .|..+.||++.+++ +.-++|+|+.+
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~ 86 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK 86 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC
Confidence 579999999999999753 57889999999974 35678888753
No 134
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=66.96 E-value=2.3 Score=44.77 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCcchh---hcCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ---TMGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+- ..|..+.||++.++.++ .++|+|+.+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~ 70 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD 70 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC
Confidence 4889999999999984 45889999999998655 457887753
No 135
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=66.76 E-value=2 Score=45.40 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccCCC----Ccccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
-+|.|.|+|.++.||+-. .|..+.||++.+++++ -++|+|+.+
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~ 76 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC
Confidence 579999999999999753 5778999999997654 348888753
No 136
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=66.39 E-value=1.8 Score=44.69 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCC----Ccccceee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP----PRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~ 2049 (2054)
.|.|+|+|.+|.||+- ..|.++.||++.+++.+ .++|+|+.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~ 61 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCcccc
Confidence 4899999999999975 45788999999998753 45677765
No 137
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=66.26 E-value=2.8 Score=43.68 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccC--CCCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGN--GPPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~ 2050 (2054)
-.|.|+|+|.++.||+. ..|.++.||++.+++ +..++|+|+.+
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~ 78 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK 78 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC
Confidence 46899999999999975 468899999999953 45778988764
No 138
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=65.80 E-value=2 Score=46.65 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCceEEEEEcCCcchhh---cCCCccceEeeccCCC----Ccccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT---MGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
-.|.|+|+|.+|.||+.. -|..+.||++.+++++ -++|+|+.+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~ 77 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC
Confidence 479999999999999864 4888999999999864 667888754
No 139
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=65.43 E-value=2.7 Score=45.20 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccCC----CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
-.|.|+|+|.+|.||+.. .|..+.||++.++++ .-++|+|+.+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~ 83 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 83 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC
Confidence 468999999999999753 577899999999975 4668888753
No 140
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.22 E-value=2.6 Score=43.97 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=34.5
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccC--CCCcccceee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGN--GPPRQTKVIF 2049 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~ 2049 (2054)
-.|.|.|+|.++.||+.. .|..+.||++.+++ +..++|||+.
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~ 69 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 69 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCT
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEc
Confidence 479999999999999864 57789999999974 3466888875
No 141
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=64.62 E-value=1.8e+02 Score=33.08 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=89.2
Q ss_pred ccchHHHHHHhccC-----------CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 636 NKGLRSLVQVLNSS-----------NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 636 ~GaI~~LV~LLks~-----------s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
.+|+..|+.++..- +......+..+|..+..........+..++.+..+...+.+.++.++..+...|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 56777777766431 3456778889999998743344444445678999999999999999999998888
Q ss_pred HhhCCCCcccc-hhH---------HHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCCh---H----HHHHHHhcCc
Q 000145 705 ALSRPTKTKTT-NKM---------SYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDP---D----IAAEVLLEDV 766 (2054)
Q Consensus 705 nLs~s~~~~d~-~r~---------~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~~~---e----~r~~Iv~~g~ 766 (2054)
.++..... .+ ... ...+..-..++++.++. .+.+.+..++..+-.+...+ + .|.++...|.
T Consensus 122 ~lc~~~~~-~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 122 ALCILPQP-EDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHTCSSS-SCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHhCCCC-CChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88763221 02 111 11233455668887774 44455444444444443322 2 2455666666
Q ss_pred HHHHHHHHcCCCHHHHH
Q 000145 767 VSALTRVLAEGTSEGKK 783 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~ 783 (2054)
.+.+..+-...++.+..
T Consensus 201 ~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 201 HQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhccCCHHHHH
Confidence 66665554445565543
No 142
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=64.35 E-value=4.5e+02 Score=36.98 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHH--ccCCHHHHHHHHHHHHHhc
Q 000145 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISIL--RSGTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 35 ~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LL--ks~s~evr~~AA~vL~~Ls 112 (2054)
+.....+.++++.+.....+...|.+|-..|..+-... ++...+...| .+.++.+|.-|+.+|.+..
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I 75 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVV 75 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34566788888887776667777888988888775443 2344444434 3457899999999997653
Q ss_pred c------CchhHHHHHhcCChHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC
Q 000145 113 K------DEDLRLKVLLGGCIPPLLSLLK---SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2054)
Q Consensus 113 ~------~ee~r~~v~~~GaIp~LV~LL~---sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~ 183 (2054)
. .++.+..+.. ..+..+.+.-. +.+..+|...+.++..++..+-... =.+.++.|++++..+
T Consensus 76 ~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~--------Wp~ll~~L~~~~~~~ 146 (1204)
T 3a6p_A 76 KFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH--------WPDMLIELDTLSKQG 146 (1204)
T ss_dssp HHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT--------CTTHHHHHHHHHHTC
T ss_pred HHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc--------chHHHHHHHHHhcCC
Confidence 2 2344444432 22233332211 1368899999999999886311001 024788888888642
Q ss_pred CCCChhHHHHHHHHHHHHhcC
Q 000145 184 NKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 184 s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
....+.++.+|..++..
T Consensus 147 ----~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 147 ----ETQTELVMFILLRLAED 163 (1204)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 34567788888888753
No 143
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=63.74 E-value=88 Score=37.24 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcChhhhHHHhhcc-h---HHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhc--cccHHHHH
Q 000145 408 QERVLEAMASLYGNIFLSQWVSHAE-A---KKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGK--REGIQLLI 480 (2054)
Q Consensus 408 q~~Aa~AL~~L~~n~~~~~~L~~~g-~---I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive--~ggIp~LV 480 (2054)
+-++...+.....++.....+.+.+ + +..++..+.. ..+.-+.-+++.++|+.... ..+..+.. ...++.+.
T Consensus 119 ~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~ 197 (304)
T 3ebb_A 119 VFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAI 197 (304)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHH
Confidence 3444444444444555444444332 2 1223333322 34556888889999987763 33333322 12445556
Q ss_pred hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000145 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2054)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G 558 (2054)
..+.+.+..+|..++..+.|++......+..-........+..+++ ..+.+....+.-+|++|...+.+.++....-|
T Consensus 198 ~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~ 276 (304)
T 3ebb_A 198 ELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLG 276 (304)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcC
Confidence 6666678889999999999998742221110001112222333343 34788888888899998876555555444333
No 144
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=63.69 E-value=3.8 Score=43.91 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=35.1
Q ss_pred CCCceEEEEEcCCcchhh--cCCCccceEeeccCCC-----Ccccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGP-----PRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~ 2050 (2054)
-.|.|+|+|.++.||+.. -|..+.|||+.+++.+ -++|||+..
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~ 90 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA 90 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC
Confidence 358999999999999754 5788999999998743 468998864
No 145
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=63.27 E-value=2.4 Score=43.25 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCcchhh--cCCCccceEeeccC----CCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
.|.|.|+|.+|.||+.. .|.++.||++.+.+ +..++|+|+.+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~ 64 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC
Confidence 58899999999999753 56689999999943 34567888754
No 146
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=62.59 E-value=1.2e+02 Score=35.34 Aligned_cols=165 Identities=14% Similarity=0.146 Sum_probs=105.7
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 000145 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2054)
Q Consensus 32 ed~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~L 111 (2054)
|+-.++...|..++...+..+ + ++|...++...++..+++-. +. ...++.++.+-.+.+.++|.-.+..+...
T Consensus 8 ~~~~~~~~~v~~lln~A~~~~-~-~~kl~~L~qa~el~~~~dp~--ll---~~~l~~il~~~~~~~~~vrk~~~~Fi~e~ 80 (257)
T 3gs3_A 8 EKTATARAKVVDWCNELVIAS-P-STKCELLAKVQETVLGSCAE--LA---EEFLESVLSLAHDSNMEVRKQVVAFVEQV 80 (257)
T ss_dssp -CHHHHHHHHHHHHHHHTTCC-H-HHHHHHHHHHHHHHTTTTGG--GH---HHHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhhhcC-c-HHHHHHHHHHHHHHHccCHh--HH---HHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 334455677777777666543 2 57888999999988775322 22 24788888877778899999999999887
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHH
Q 000145 112 CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQ 191 (2054)
Q Consensus 112 s~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~ 191 (2054)
+.... .....+++.|..+|+++|+.+.+.+..+..++.. ..++.+...++.+ .-.
T Consensus 81 ~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~--------------------~~l~~i~~~~~~~-~~~ 135 (257)
T 3gs3_A 81 CKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK--------------------NGLQYLCSLMEPG-DSA 135 (257)
T ss_dssp HHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--------------------HHHHHHTTSSSCC-HHH
T ss_pred HHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCCCc-chH
Confidence 73321 1222467888888888899998888888777763 2222222222111 112
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 192 e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
+.....+..+ -..++.+..+.+..++..+++.+..+.
T Consensus 136 ~~~W~~m~~l----------------K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 136 EQAWNILSLI----------------KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHH----------------HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 2222222222 234566677788899999998887766
No 147
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=61.84 E-value=1.1e+02 Score=37.62 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch--h-HHHHHh--------
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED--L-RLKVLL-------- 123 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee--~-r~~v~~-------- 123 (2054)
......+++||..+.........++ .|.++|..|...|.+..+.++..+..+|..+|.-++ + ...+.+
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl-~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-TCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHH-cChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 3556788999999987765555554 568999999999999999999999999988885432 2 444443
Q ss_pred --cCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH----HHHHHHcCcHHHHHHhhCC
Q 000145 124 --GGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG----MKIFVTEGVVPTLWDQLNP 182 (2054)
Q Consensus 124 --~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~----re~Iv~aG~Vp~Lv~LL~s 182 (2054)
..-+..++..|.. .+.+.+..+...+-.+..+.. +-.. +..+...|..+.+-+ ++.
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~--dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE--ELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 2457888999987 688888888877777776432 3333 344445566555544 554
No 148
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=61.81 E-value=1.1e+02 Score=34.84 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch--h-HHHHHh--------
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED--L-RLKVLL-------- 123 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee--~-r~~v~~-------- 123 (2054)
......+++||..+.........++ .|.+++..+...|.+.++.++..+..+|..+|.-++ . ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl-~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-TSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHH-cCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 4556789999999987776665555 558899999999999999999999999988875432 4 444432
Q ss_pred --cCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH----HHHHHHcCcHHHHHH
Q 000145 124 --GGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG----MKIFVTEGVVPTLWD 178 (2054)
Q Consensus 124 --~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~----re~Iv~aG~Vp~Lv~ 178 (2054)
..-+..+++.+.. .+.+.+..+...+-.+..+.. +-.. +..+...|..+.+-+
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~--dl~~R~~lR~ef~~~Gl~~il~~ 206 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE--ELDFRVHIRSELMRLGLHQVLQE 206 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCChHHHHHH
Confidence 2457788888875 678888888877777776432 3222 344445555554433
No 149
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=61.36 E-value=2.5 Score=44.64 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=32.4
Q ss_pred hcCCCceEEEEEcCCcchh--hcCCCccceEeeccCC-----CCcccceeee
Q 000145 2006 HCLPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG-----PPRQTKVIFT 2050 (2054)
Q Consensus 2006 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 2050 (2054)
.--.|.|.|+|.+|.||+. ..|..+.||++.+++. .-.+|+|+.+
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~ 67 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK 67 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC
Confidence 3457899999999999985 3578899999999943 2458888753
No 150
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=60.84 E-value=1.8e+02 Score=35.77 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH--HHHHHhhhcCcHHHHHHHHccC-----------CHHHHHHHHHHHHH
Q 000145 44 FLEQLHANMSSPQERELITMRILTIAKAKKE--ARLLIGSHAQAMPLFISILRSG-----------TPLAKVNVAATLSV 110 (2054)
Q Consensus 44 lIe~L~~ssss~~ere~AL~~L~~La~~~d~--ar~~I~~~aGgVp~LV~LLks~-----------s~evr~~AA~vL~~ 110 (2054)
.|.+|+... ..+.-...+..|....+..+. .+.++ .+|+..|+..|..- +...+..++++|+.
T Consensus 9 yv~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~---~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka 84 (386)
T 2bnx_A 9 YIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTFG---AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84 (386)
T ss_dssp HHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-chHHHHHHHHHHhHHHhcCCcHHHHHHH---HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 455565542 322222334445444444332 33332 37888888888531 35677889999998
Q ss_pred hccCchhHHHHHhc-CChHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 000145 111 LCKDEDLRLKVLLG-GCIPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 111 Ls~~ee~r~~v~~~-GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
++........+... +++..|...|.++++.++..++..|..+|..
T Consensus 85 lmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 85 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 88777666666654 7899999999889999999999999999974
No 151
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=60.65 E-value=3.2 Score=44.23 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccCCC----Ccccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
-.|.|.|+|.+|.||+- ..|..+.||++.+++++ -++|+|+.+
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~ 71 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC
Confidence 47899999999999975 34778999999998653 457888753
No 152
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=60.05 E-value=3.8 Score=42.34 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCcchhh--cCCCccceEeecc----CCCCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT--MGTTNAFCRLTIG----NGPPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+.. .|..+.||++.+. .+..++|+|+.+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~ 67 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC
Confidence 48899999999999753 4678999999994 355778998764
No 153
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=59.41 E-value=3.8 Score=42.25 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
..|.|+|+|.++.||+. ..|..+.||++.+|+. .++|+++.
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~ 50 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-DQKSNVAE 50 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-EEECCCCT
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCc-cceeEecc
Confidence 45889999999999986 3588999999999975 57898885
No 154
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.85 E-value=5.6 Score=41.34 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCcchhh--cCCCccceEeeccCC----CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG----PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||+.. .| .+.||++.++++ .-++|+|+.+
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~ 69 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC
Confidence 68999999999999753 56 999999999753 3468888754
No 155
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=54.82 E-value=2.9 Score=45.14 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred hcCCCceEEEEEcCCcchhh------------cCCCccceEeeccCCCCcccceeee
Q 000145 2006 HCLPGCLTVTIKRGNNLKQT------------MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2006 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.-+.|.|.|+|.++.||+-. .|..+.||++.+|+..-.+|||+..
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k 81 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK 81 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS
T ss_pred ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC
Confidence 34679999999999999742 2667999999999876568988643
No 156
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=54.36 E-value=1.9e+02 Score=35.47 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch--h-HHHHHh--------
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED--L-RLKVLL-------- 123 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee--~-r~~v~~-------- 123 (2054)
......+++||..+.........++ .|.+++..+...|.+.++.++..+..+|..+|..++ . ...+..
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl-~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-HSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH-cCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 4557889999999988776665555 458999999999999999999999999988886433 3 344332
Q ss_pred --cCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH----HHHHHHcCcHHHHHHhhCC
Q 000145 124 --GGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG----MKIFVTEGVVPTLWDQLNP 182 (2054)
Q Consensus 124 --~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~----re~Iv~aG~Vp~Lv~LL~s 182 (2054)
..-+..+++.+.. .+.+.+..++..+-.+..+.. +-.. +..+...|..+.+ +-++.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~--dl~~R~~LR~Ef~~~GL~~il-~~Lr~ 213 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE--ELDFRVHIRSELMRLGLHQVL-QELRE 213 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 2457788888875 678888888877777776432 3222 3445555655554 44543
No 157
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=54.09 E-value=4.9 Score=41.62 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCCceEEEEEcCCcchhh--c-CCCccceEeeccCC--CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQT--M-GTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
-.|.|.|+|.+|.||+.. . |..+.||++.++++ .-++|+|+.+
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~ 67 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK 67 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC
Confidence 458899999999999864 2 67899999999853 5668888753
No 158
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=53.01 E-value=74 Score=38.26 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHh
Q 000145 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2054)
Q Consensus 100 vr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~L 179 (2054)
+...+-..|..+..+.+...-++..++|..+......++.++..+.++.|..+|.. |+ -...--...+|.+++.
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa---ks---L~~t~L~e~LPFi~~~ 332 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA---KA---LAKTPLENILPFLLRL 332 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC---GG---GGTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch---HH---HhhccccccchHHHHH
Confidence 33445566667777777788888999999999999999999999999999999863 11 1111123478888888
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC-------CHHHHHHHHHHHHH
Q 000145 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-------NAAAQSNAASLLAR 242 (2054)
Q Consensus 180 L~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~-------s~evq~~A~~aL~n 242 (2054)
+.... +..+.-...+.|.|...++..-+..-+..|+|..|...+... ...-+..+|.+++|
T Consensus 333 i~~h~--eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 333 IEIHP--DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHCC--CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred hccCC--CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 87543 445777889999999999877777777888898888876553 22345556666555
No 159
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=49.92 E-value=7.1 Score=41.28 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCceEEEEEcCCcchhh-cCCCccceEeeccC----CCCcccceee
Q 000145 2008 LPGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGN----GPPRQTKVIF 2049 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~ 2049 (2054)
--|.|+|+|.++.||+.. -|.++.||++.+.. ..-++|+|+.
T Consensus 25 ~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~ 71 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVP 71 (153)
T ss_dssp SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCT
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccC
Confidence 358899999999999754 37889999999953 2356788865
No 160
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=49.24 E-value=2.3e+02 Score=34.91 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC-
Q 000145 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD- 114 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~- 114 (2054)
.+-+.|..++...+..+. .+|...++.+.++..+++-. ++ .+.++.++.+-.+.+.++|.-.+..|...|..
T Consensus 22 ~~~~~v~~lln~A~~~~~--~~Kl~~L~q~~EL~l~~dps--Ll---~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~ 94 (386)
T 3o2t_A 22 TTSERVVDLLNQAALITN--DSKITVLKQVQELIINKDPT--LL---DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD 94 (386)
T ss_dssp CHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHHTTCGG--GG---GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhhccCh--HHHHHHHHHHHHHHhccCHH--HH---HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 567788888888877543 46888999999987654221 22 46899999999989999999999999887642
Q ss_pred chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHH
Q 000145 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFV 194 (2054)
Q Consensus 115 ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~A 194 (2054)
.+. ...+++.|..+|.++|+.+.+.+..+..++.. ..++.+......+ ...+.+
T Consensus 95 ~el-----~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp--------------------l~f~~i~~~~~~~-~~~e~~ 148 (386)
T 3o2t_A 95 IEL-----LLKLIANLNMLLRDENVNVVKKAILTMTQLYK--------------------VALQWMVKSRVIS-ELQEAC 148 (386)
T ss_dssp GGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--------------------HHHHHHHHC-CCC-HHHHHH
T ss_pred HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------------------HHHHHHhcCCCcc-hhHHHH
Confidence 121 12456788888888899998888888777663 1111111111111 112222
Q ss_pred HHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 195 TGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 195 l~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
...+..+ -..++.+..+.+..++..+++.+..+.
T Consensus 149 W~~m~~l----------------K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 149 WDMVSAM----------------AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHH----------------HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2222222 234556667778899999998887766
No 161
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=48.27 E-value=4.3 Score=42.08 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=34.5
Q ss_pred cCCCceEEEEEcCCcchhh-------cC------CCccceEeeccCCCCcccceeee
Q 000145 2007 CLPGCLTVTIKRGNNLKQT-------MG------TTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2007 ~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.+.|.|.|+|.++.||+-. +| ..+.||++.+|+.+-.+|+++..
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~ 59 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK 59 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC
Confidence 3569999999999999732 22 37999999998876678888653
No 162
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=47.15 E-value=5.8 Score=41.29 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCCceEEEEEcCCcchhhcCCCccceEeeccCC---CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNG---PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 2050 (2054)
-.|.|+|+|.++.| +...|..+.||++.++++ .-++|||+.+
T Consensus 24 ~~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~ 68 (138)
T 1wfm_A 24 QKAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKR 68 (138)
T ss_dssp TTTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCC
T ss_pred CCCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcC
Confidence 46899999999997 456788999999999642 2478998764
No 163
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=44.93 E-value=9.5 Score=44.32 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCceEEEEEcCCcchh--hcCCCccceEeeccCC--CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
-.|.|.|+|.+|.||.. .-|..+.||++.+|+. .-++|||+.+
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~ 63 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK 63 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC
Confidence 46899999999999974 4578899999999864 3567988754
No 164
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=41.97 E-value=2.2e+02 Score=34.45 Aligned_cols=132 Identities=8% Similarity=0.039 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc-CCCh
Q 000145 410 RVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG-LSSE 488 (2054)
Q Consensus 410 ~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~-s~d~ 488 (2054)
++..-|.-+..+++.-.-++..+|+..+.......+.++-+.....|...+....-.. +--.+.+|-+++.++ .+++
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCc
Confidence 3333344445556666678889999999999999999999999888887765421111 112356777777665 6677
Q ss_pred hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-------CCHHHHHHHHHHHHHH
Q 000145 489 QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-------GSQKAREVAAHVLWIL 543 (2054)
Q Consensus 489 ~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-------~s~~Vre~AA~aL~nL 543 (2054)
++.-.+.+.|.|...|....+......|+++.|-..... .+..-+..++++++|-
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 888999999999998766666666778888887765422 1344566666666664
No 165
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=40.16 E-value=4.9e+02 Score=30.10 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcc
Q 000145 531 KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPS 607 (2054)
Q Consensus 531 ~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~ 607 (2054)
+.+-....-...|..+.+. ..+ .+.++.++.+..+.+.++|+..+..+...+.... ...++.|..+++++++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp--~ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCA--ELA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTG--GGH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCH--hHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4555555556665554322 111 3456666777677888999999999988875532 34667788888888888
Q ss_pred hHHHHHHHHHHHH
Q 000145 608 SKAHVIKVLGHVL 620 (2054)
Q Consensus 608 V~~~a~~AL~~La 620 (2054)
+...+..|.+.+.
T Consensus 106 V~K~~I~~~~~iY 118 (257)
T 3gs3_A 106 VIKRVIQACGSIY 118 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
No 166
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=39.41 E-value=14 Score=43.58 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=35.5
Q ss_pred cCCCceEEEEEcCCcchh--hcCCCccceEeecc--CCCCcccceeee
Q 000145 2007 CLPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIG--NGPPRQTKVIFT 2050 (2054)
Q Consensus 2007 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2050 (2054)
.-.|.|.|+|.++.||+- ..|..+.||++.+. .+..++|+|+.+
T Consensus 17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~ 64 (296)
T 1dqv_A 17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK 64 (296)
T ss_dssp SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC
Confidence 346899999999999974 45778999999993 456778998854
No 167
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=35.67 E-value=12 Score=38.90 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.1
Q ss_pred CceEEEEEcCCcchhhcCCCccceEeeccCCCCccccee
Q 000145 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 (2054)
|.|+|+|+++.|+. ..|..+.||+++ +..++|+++
T Consensus 5 ~~L~V~V~~A~~l~-~~g~~DPYv~v~---~~~~kt~~~ 39 (131)
T 2cjt_A 5 SLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVKSTTI 39 (131)
T ss_dssp EEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECC
T ss_pred eEEEEEEEEeECCC-CCCCcCeEEEEE---ecCEEEeEe
Confidence 67999999999985 578899999999 344556655
No 168
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=34.36 E-value=17 Score=42.77 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCcchhh--cCCCccceEeeccCC----CCcccceee
Q 000145 2009 PGCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNG----PPRQTKVIF 2049 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~ 2049 (2054)
.|.|+|+|.++.||+.. .|..+.||++.++++ .-++|+|+.
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~ 197 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK 197 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceec
Confidence 48899999999999753 577799999999853 345788775
No 169
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=30.02 E-value=18 Score=48.19 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=36.2
Q ss_pred CCCceEEEEEcCCcchh-----hcCCCccceEeeccCC--CCcccceeee
Q 000145 2008 LPGCLTVTIKRGNNLKQ-----TMGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
-.|.|.|+|.+|.||+. ..|..+.||++.+|+. .-++|||+.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~ 65 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 65 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC
Confidence 46899999999999976 6789999999999974 4578998853
No 170
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=29.11 E-value=3.9e+02 Score=32.90 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=49.3
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVL 620 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La 620 (2054)
.+.++.++.+..+.+.++|...+..|...+.... ...++.|..+++++++.|...+..|.+++.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678888888888899999999999998876532 345677888888888877777777766653
No 171
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=28.79 E-value=1.3e+03 Score=31.71 Aligned_cols=340 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhH
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~---r~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
+.+-.+..+.+..-+..|+++++.+....... +..-...-..|.|-..+. +-+++....-..++..+..+.+..-.
T Consensus 511 ~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~ 590 (997)
T 1vsy_5 511 ELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRS 590 (997)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhh
Q ss_pred HHHHHHh-----------------------------------------------cCCCcchHHHHHHHHHHHHhhhcch-
Q 000145 595 NQLLALL-----------------------------------------------LGDSPSSKAHVIKVLGHVLTMALQE- 626 (2054)
Q Consensus 595 p~Lv~LL-----------------------------------------------~~~~~~V~~~a~~AL~~La~~~~~~- 626 (2054)
+.|++.+ ......|++.+...|+.+......+
T Consensus 591 ~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~ 670 (997)
T 1vsy_5 591 KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPS 670 (997)
T ss_dssp HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccC
Q ss_pred --------------------------HHHHhhhhcccchHHHHHHhc-------cCCHH----------HHHHHHHHHHH
Q 000145 627 --------------------------DLVQKGSAANKGLRSLVQVLN-------SSNEE----------NQEYAASVLAD 663 (2054)
Q Consensus 627 --------------------------d~~~~~l~~~GaI~~LV~LLk-------s~s~e----------vre~Aa~ALan 663 (2054)
+..... +..+.+-+. .-++. .+....+....
T Consensus 671 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~ 744 (997)
T 1vsy_5 671 ISDPTTLLEAERNDPDGLGLPLKSVPEKVDAY------IKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEM 744 (997)
T ss_dssp BSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHH------HHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhccccccccCccccCcchHHHH------HHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHH
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHH-HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh-cCCHHH
Q 000145 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQ-SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDA 740 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~-~vr~~-AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~-s~d~~V 740 (2054)
+.......-...+..-.+|.|+++....+. +.... |..++..++..... .-....++..+..... +.+. +
T Consensus 745 l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~------~~~~~~~l~~l~~~~~~s~sW-~ 817 (997)
T 1vsy_5 745 ARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR------KNHVAAIVDYVCSSNVALSSN-Q 817 (997)
T ss_dssp SSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC------HHHHHHHHHHSSCTTTTSCSS-S
T ss_pred hcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhcCCcH-H
Q ss_pred HHHHHHHHHHh------hCChHHHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhhcC-CCchhHhhhhhhhhhH
Q 000145 741 AETAVAALANL------LSDPDIAAEVLLEDVVSALTRVLAEGT-SEGKKNASRALHQLLKHF-PVGDVLKGNAQCRFVV 812 (2054)
Q Consensus 741 re~Al~AL~NL------a~~~e~r~~Iv~~g~I~~LV~LL~s~~-~evr~~Aa~AL~nL~~~~-~~~e~i~~~i~~~g~v 812 (2054)
+..++..+..+ ..++..+..+.+ .+..+|.+.. .+||+.|+.+|+-|..+. + ...+
T Consensus 818 R~~~L~~lq~~~f~n~f~l~~~~~~~i~~-----~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~-----------~~~~ 881 (997)
T 1vsy_5 818 TKLQLAFIQHFLSAELLQLTEEEKNKILE-----FVVSNLYNEQFVEVRVRAASILSDIVHNWKE-----------EQPL 881 (997)
T ss_dssp HHHHHHHHHHHHHHHTTTSCTTHHHHTHH-----HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHH-----HHHHHhcCCccHHHHHHHHHHHHHHHHcCCc-----------hhhH
Q ss_pred HHHHHhhccCCCC---------------chhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChh-
Q 000145 813 LTLVDSLNAMDMN---------------GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPP- 876 (2054)
Q Consensus 813 ~~LV~LL~sg~~~---------------~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~- 876 (2054)
..++.-+...-.. ...-...|+.-+.+........ .|.|++.++..+......
T Consensus 882 ~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP-----------~P~w~P~~l~~La~~~~~~ 950 (997)
T 1vsy_5 882 LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP-----------LPPWIPKNLSNLSSWARTS 950 (997)
T ss_dssp HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS-----------CCTHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC-----------CCcccHHHHHHHHHHhCCC
Q ss_pred --HHHHHHHHHHHhhccCCc-hhhh
Q 000145 877 --LQDKAIEILSRLCGDQPA-VLGD 898 (2054)
Q Consensus 877 --vq~~Ai~iL~~L~~~~~~-~~~~ 898 (2054)
++..+-.+|+++-..|.. +..+
T Consensus 951 ~~i~~tvk~tlseFkrTH~D~W~~~ 975 (997)
T 1vsy_5 951 GMTGNAAKNTISEFKKVRADTWKFD 975 (997)
T ss_dssp SSHHHHTHHHHHHHHHHTSTTHHHH
T ss_pred CchHHHHHHHHHHHHhccchhHHHH
No 172
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=28.66 E-value=2.3e+02 Score=32.70 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHhhCChH-HHHHHHhcCcHHHHHHHH----cC----CCHHHHHHHHHHHHHhhhcCCCchhHhhh
Q 000145 735 TSSIDAAETAVAALANLLSDPD-IAAEVLLEDVVSALTRVL----AE----GTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2054)
Q Consensus 735 s~d~~Vre~Al~AL~NLa~~~e-~r~~Iv~~g~I~~LV~LL----~s----~~~evr~~Aa~AL~nL~~~~~~~e~i~~~ 805 (2054)
+.++..+--++++++|+..++. .+..+..+.....+...+ .+ .+..+|-+++..+.|++... + ..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~-----~-~~ 174 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV-----T-KG 174 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-----H-TS
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH-----h-hc
Confidence 4566778889999999999888 566555443344444433 11 25678889999999988731 1 00
Q ss_pred hhhhhhHHHHHHhhcc----C---CCCchhHHHHHHHHHHHhhc
Q 000145 806 AQCRFVVLTLVDSLNA----M---DMNGTDVADALEVVALLART 842 (2054)
Q Consensus 806 i~~~g~v~~LV~LL~s----g---~~~~~~~~~AL~ALa~La~~ 842 (2054)
-........+++.+.. . +++.+....++-++|+|...
T Consensus 175 ~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 175 NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 0012233445555542 2 23456688889999999864
No 173
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=27.38 E-value=17 Score=46.70 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred ceEEEEEcCCcchh-hcCCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQ-TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.|+|+|.+|.||+. ..|.+..||++.+|+ ...+|||+..
T Consensus 395 ~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~-~~~kTkvik~ 434 (540)
T 3nsj_A 395 HLVVSNFRAEHLWGDYTTATDAYLKVFFGG-QEFRTGVVWN 434 (540)
T ss_dssp EEEEEEEEEESCCCSSCSCCCEEEEEEETT-EEEECCCBCS
T ss_pred EEEEEEEEccCCCcccCCCcCeEEEEEECC-EeeeeeeecC
Confidence 59999999999986 347788999999996 4589999864
No 174
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=26.88 E-value=20 Score=45.23 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=34.3
Q ss_pred hhcCCCceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceeee
Q 000145 2005 LHCLPGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2005 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
-.+-.|.|+|+|.+|.||+- ..|.++.||++.+|+ ...+|+|+.+
T Consensus 382 ~~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~ 428 (510)
T 3jzy_A 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQD 428 (510)
T ss_dssp ----CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSS
T ss_pred CCCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCC
Confidence 33557899999999999954 568899999999975 5678888753
No 175
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=26.71 E-value=3.2e+02 Score=34.00 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=66.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhcc--------CCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 647 NSSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTS--------NTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 647 ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~-g~V~~Lv~LL~d--------gs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
.+..+..+..++++++|++. ++.....+... .....+++.+.+ .+..++..++..+.|++..... .+
T Consensus 272 ~~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~---~~ 347 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK---GN 347 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred CCCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc---cc
Confidence 34578899999999999998 55533333332 334566665531 2456888888899999861110 01
Q ss_pred HHHHhcCChhhHHhhhh---------cCCHHHHHHHHHHHHHhhC-ChHHH
Q 000145 718 MSYIAEGDVKPLIKLAK---------TSSIDAAETAVAALANLLS-DPDIA 758 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~---------s~d~~Vre~Al~AL~NLa~-~~e~r 758 (2054)
.+......+.+.+. ..+.+..-.++-||++|.. ++..+
T Consensus 348 ---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 348 ---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 395 (425)
T ss_dssp ---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 01223445666665 2577888889999999985 44444
No 176
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=25.98 E-value=29 Score=36.98 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=33.1
Q ss_pred ceEEEEEcCCcchhhcCCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
.|+|+||+-.||+ |...-++|+|. -|-.++|||+.+
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~F-Rg~k~kTkvi~~ 57 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTF-RGQSFYSRVLEN 57 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEE-TTEEEECCCEEE
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEE-eccceeeEEecc
Confidence 5999999999999 89999999999 599999999964
No 177
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=25.86 E-value=8e+02 Score=29.27 Aligned_cols=148 Identities=9% Similarity=0.107 Sum_probs=93.6
Q ss_pred HHHHHHHccC------CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh--ccCCHHHHHHHHHHHHHHhcCCCC
Q 000145 87 PLFISILRSG------TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL--KSESTDTRKAAAEALYEVSSGGLS 158 (2054)
Q Consensus 87 p~LV~LLks~------s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL--~sed~eVr~aAa~AL~nLS~~~~n 158 (2054)
..+..++++| +.+.-..+...|-.++.+-..-.++.... ...|-.++ ...++.+++.|++++..--.+
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN--- 100 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN--- 100 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc---
Confidence 3344455555 33345567778888888887777777642 33333333 335788999999999887763
Q ss_pred CChhHHHHHHHc--CcHHHHHHhh----CCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CH
Q 000145 159 DDHVGMKIFVTE--GVVPTLWDQL----NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NA 230 (2054)
Q Consensus 159 k~~~~re~Iv~a--G~Vp~Lv~LL----~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~ 230 (2054)
.+...+.+.+. ..|..+..-| ..++.....+...-+.+|-.|..++... ...|+..|..++... .+
T Consensus 101 -NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 101 -NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp -CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCH
T ss_pred -CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCH
Confidence 34444444432 3444444333 2222223467777788999998876322 145888888888877 78
Q ss_pred HHHHHHHHHHHHHH
Q 000145 231 AAQSNAASLLARLM 244 (2054)
Q Consensus 231 evq~~A~~aL~nLs 244 (2054)
.++..++.++..+.
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 89999988887776
No 178
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=24.02 E-value=25 Score=40.75 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCcchh--hcCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.+|.||+. ..|..+.||++.+++++ -++|+|+.+
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~ 196 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC
Confidence 5789999999999974 45778999999997643 357887653
No 179
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.73 E-value=73 Score=36.89 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHHhhcChh-hhhhhhhCCCHHHHHHHhcc--------CCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 648 SSNEENQEYAASVLADLFSMRQD-ICGSLATDEIVNPCMRLLTS--------NTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 648 s~s~evre~Aa~ALanLas~~~e-~r~~Iv~~g~V~~Lv~LL~d--------gs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
+.++..+..++++++|+.. ++. .+..+........++..+.+ .+..++..++..+.|++..... .+
T Consensus 101 ~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~---~~- 175 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK---GN- 175 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT---SC-
T ss_pred CCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh---cc-
Confidence 4578899999999999998 455 45555443334444544321 2557888899999999861110 00
Q ss_pred HHHhcCChhhHHhhhhc---------CCHHHHHHHHHHHHHhhC
Q 000145 719 SYIAEGDVKPLIKLAKT---------SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~LL~s---------~d~~Vre~Al~AL~NLa~ 753 (2054)
.+.+....+++.+.. .+.+..-.++-||++|..
T Consensus 176 --~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 176 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp --SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 012234455555542 366777789999999975
No 180
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.08 E-value=3.1e+02 Score=29.10 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=56.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS------ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s------ed~eVr~aAa~AL~nLS~ 154 (2054)
++..|.+-|+++++.++..|+.+|-.+.++ ...+..+.....+..|++++.. .++.|+..++..+..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 577788888999999999999999777655 4566667667888899998864 378999999999887774
No 181
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.04 E-value=80 Score=34.48 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=66.3
Q ss_pred CcccchHHHHHhhcCChhHHHHHHHHHHHHHhcc--cccccchhhhhhhhhhHHHhhc------chhhHHHHHHHHHHHH
Q 000145 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ--EHFQQDITTKNAVVPLVQLAGI------GILNLQQTAVKALEKI 1626 (2054)
Q Consensus 1555 ~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~~~pl~~~~~~------~~~~~~~~~~~~~~~~ 1626 (2054)
.+..|+..|..-|.++...+|-.|=.||+.+..| .+|+..+.++-.+--|++++.- -=..++++++.-++..
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999999 8999999999999999999852 2357888888888877
Q ss_pred hhhhhh
Q 000145 1627 STSWPK 1632 (2054)
Q Consensus 1627 ~~~~~~ 1632 (2054)
+...|+
T Consensus 127 ~~~f~~ 132 (171)
T 1juq_A 127 TMALPE 132 (171)
T ss_dssp HHHCTT
T ss_pred HHHcCC
Confidence 776654
No 182
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.37 E-value=2.5e+02 Score=31.83 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhh-cCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLA-FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~-~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
++..|.+.|.+.++.++..|+.+|-.+..+ ....+..+.....+..|..+++...+..|+......+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999887743 334566677778888888888755677899888888877654
No 183
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.13 E-value=1.6e+02 Score=33.44 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=55.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccC--chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKD--EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~--ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~ 154 (2054)
++..|.+-|+++++.++..|+.+|-.+.++ ......+.....+..|.++++. .+++|++.++..+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 577788888999999999999999877665 3445556666777788888876 588999999999888774
No 184
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.36 E-value=2.2e+02 Score=29.92 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=55.2
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 725 DVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 725 aV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+++.|.+-|.+.++.++..|+..|-.+.. .+..+.++...+.+..|+.++...++.++++....+......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 55666666777788888888888888875 455666777777888888888778999999999988876654
Done!