Query 000146
Match_columns 2052
No_of_seqs 449 out of 1378
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 20:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 7.1E-52 1.5E-56 535.3 36.5 744 647-1429 12-793 (815)
2 KOG1820 Microtubule-associated 100.0 2E-42 4.3E-47 447.8 42.8 744 93-856 23-792 (815)
3 KOG2171 Karyopherin (importin) 100.0 4.6E-26 1E-30 293.8 60.3 890 93-1106 120-1073(1075)
4 KOG1824 TATA-binding protein-i 99.9 1.8E-22 3.9E-27 251.3 61.1 869 15-1022 9-1056(1233)
5 PF12348 CLASP_N: CLASP N term 99.8 3.8E-20 8.2E-25 217.0 19.7 210 323-535 7-227 (228)
6 KOG2171 Karyopherin (importin) 99.8 9.9E-15 2.2E-19 190.1 70.2 834 329-1420 9-935 (1075)
7 PF12348 CLASP_N: CLASP N term 99.7 4E-17 8.6E-22 191.5 18.0 208 892-1102 7-227 (228)
8 KOG2023 Nuclear transport rece 99.7 2.2E-12 4.7E-17 157.7 53.5 703 94-1105 131-882 (885)
9 KOG1824 TATA-binding protein-i 99.7 3.6E-10 7.7E-15 143.2 69.3 517 364-1022 127-746 (1233)
10 KOG1242 Protein containing ada 99.6 1E-13 2.2E-18 172.0 32.0 514 177-855 27-551 (569)
11 KOG2956 CLIP-associating prote 99.6 3E-13 6.5E-18 161.3 27.3 387 720-1111 60-508 (516)
12 PLN03200 cellulose synthase-in 99.5 2.6E-07 5.6E-12 131.1 77.5 770 93-1080 16-860 (2102)
13 KOG0213 Splicing factor 3b, su 99.5 1.7E-09 3.8E-14 133.4 47.3 590 375-1091 452-1118(1172)
14 KOG2023 Nuclear transport rece 99.5 5.1E-10 1.1E-14 137.5 41.8 639 361-1084 125-821 (885)
15 KOG1242 Protein containing ada 99.4 8.9E-11 1.9E-15 146.3 31.3 336 99-520 104-451 (569)
16 KOG0213 Splicing factor 3b, su 99.4 1.1E-07 2.3E-12 118.1 53.5 557 653-1325 525-1143(1172)
17 PLN03200 cellulose synthase-in 99.3 1.2E-06 2.5E-11 124.7 64.4 810 328-1427 17-887 (2102)
18 KOG0915 Uncharacterized conser 99.2 2.1E-08 4.5E-13 133.5 38.5 564 441-1081 817-1428(1702)
19 COG5181 HSH155 U2 snRNP splice 99.2 2.3E-08 4.9E-13 121.8 35.2 191 899-1091 695-923 (975)
20 KOG1241 Karyopherin (importin) 99.1 5.6E-07 1.2E-11 113.6 43.3 586 339-1088 145-819 (859)
21 KOG1241 Karyopherin (importin) 99.1 2.3E-05 5E-10 99.5 54.8 730 134-1081 56-856 (859)
22 KOG0212 Uncharacterized conser 99.1 1.4E-07 3.1E-12 115.2 31.7 379 642-1082 2-408 (675)
23 KOG0212 Uncharacterized conser 99.0 4.7E-07 1E-11 110.8 35.4 406 756-1339 42-459 (675)
24 COG5181 HSH155 U2 snRNP splice 99.0 3.7E-06 7.9E-11 103.2 40.7 643 100-1036 255-942 (975)
25 KOG2956 CLIP-associating prote 98.9 4.4E-08 9.5E-13 118.0 20.9 205 335-542 298-506 (516)
26 KOG0211 Protein phosphatase 2A 98.9 7.7E-06 1.7E-10 108.2 39.7 562 333-1086 91-670 (759)
27 KOG0915 Uncharacterized conser 98.8 0.00019 4.1E-09 97.2 50.1 287 167-515 818-1112(1702)
28 KOG1248 Uncharacterized conser 98.8 0.00044 9.6E-09 92.5 50.6 657 354-1097 82-873 (1176)
29 KOG2933 Uncharacterized conser 98.8 5.5E-08 1.2E-12 112.2 12.6 184 329-514 93-278 (334)
30 PRK13800 putative oxidoreducta 98.7 1.5E-06 3.3E-11 121.1 28.3 270 726-1076 624-895 (897)
31 PF01602 Adaptin_N: Adaptin N 98.7 8.8E-05 1.9E-09 98.5 43.7 491 331-1037 11-520 (526)
32 COG5215 KAP95 Karyopherin (imp 98.7 0.00059 1.3E-08 84.1 43.4 455 368-1021 181-691 (858)
33 KOG1248 Uncharacterized conser 98.7 0.0089 1.9E-07 80.6 65.9 756 167-1108 93-922 (1176)
34 COG5215 KAP95 Karyopherin (imp 98.6 0.00066 1.4E-08 83.7 43.2 467 369-1018 268-779 (858)
35 PRK13800 putative oxidoreducta 98.6 2.7E-06 5.9E-11 118.6 26.1 242 757-1078 622-865 (897)
36 PF01602 Adaptin_N: Adaptin N 98.6 7.9E-05 1.7E-09 99.0 37.9 460 330-962 48-523 (526)
37 PRK09687 putative lyase; Provi 98.6 6.7E-06 1.4E-10 99.1 23.9 146 896-1076 132-278 (280)
38 PTZ00429 beta-adaptin; Provisi 98.5 0.0027 5.8E-08 85.7 46.7 384 328-827 36-433 (746)
39 PTZ00429 beta-adaptin; Provisi 98.5 0.005 1.1E-07 83.1 48.3 83 421-510 49-131 (746)
40 KOG2933 Uncharacterized conser 98.4 3.2E-06 7E-11 98.0 13.4 181 896-1079 92-276 (334)
41 PRK09687 putative lyase; Provi 98.3 4E-05 8.7E-10 92.5 21.3 150 901-1079 100-249 (280)
42 KOG0211 Protein phosphatase 2A 98.3 0.00063 1.4E-08 90.6 32.5 330 737-1088 292-633 (759)
43 KOG1943 Beta-tubulin folding c 97.9 0.19 4.2E-06 67.6 42.9 598 364-1110 341-987 (1133)
44 PF10508 Proteasom_PSMB: Prote 97.6 0.056 1.2E-06 71.2 32.6 178 336-514 214-421 (503)
45 PF05004 IFRD: Interferon-rela 97.6 0.0057 1.2E-07 75.0 21.9 190 328-517 47-261 (309)
46 PF10508 Proteasom_PSMB: Prote 97.5 0.15 3.3E-06 67.2 35.5 399 761-1282 43-465 (503)
47 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0005 1.1E-08 69.1 8.5 93 340-433 2-95 (97)
48 KOG1060 Vesicle coat complex A 97.4 0.31 6.7E-06 63.6 34.1 86 420-512 51-136 (968)
49 KOG2259 Uncharacterized conser 97.4 0.031 6.7E-07 71.1 24.7 274 755-1060 197-492 (823)
50 KOG1943 Beta-tubulin folding c 97.3 1.5 3.2E-05 59.7 45.2 497 401-1081 337-882 (1133)
51 KOG1240 Protein kinase contain 97.2 0.0095 2.1E-07 79.9 19.2 290 653-1020 436-745 (1431)
52 KOG1060 Vesicle coat complex A 97.1 0.45 9.7E-06 62.2 31.6 167 327-512 38-208 (968)
53 KOG0166 Karyopherin (importin) 97.0 0.14 3E-06 65.5 25.8 181 328-509 70-262 (514)
54 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0033 7.1E-08 63.3 9.1 93 908-1002 2-94 (97)
55 KOG1020 Sister chromatid cohes 97.0 3.9 8.4E-05 57.7 39.9 143 895-1041 1124-1295(1692)
56 PF12460 MMS19_C: RNAPII trans 96.9 0.24 5.2E-06 63.9 26.9 185 902-1094 200-407 (415)
57 PF12717 Cnd1: non-SMC mitotic 96.8 0.02 4.3E-07 64.8 14.9 130 905-1042 1-140 (178)
58 KOG1240 Protein kinase contain 96.8 0.088 1.9E-06 71.2 22.1 274 737-1045 439-729 (1431)
59 KOG1020 Sister chromatid cohes 96.8 5.2 0.00011 56.5 43.0 139 394-541 809-957 (1692)
60 PF12460 MMS19_C: RNAPII trans 96.6 0.11 2.5E-06 66.8 21.6 189 334-527 200-407 (415)
61 KOG0166 Karyopherin (importin) 96.6 0.17 3.7E-06 64.7 22.2 361 895-1306 69-458 (514)
62 KOG1058 Vesicle coat complex C 96.6 1.2 2.5E-05 58.3 29.0 109 1213-1328 321-429 (948)
63 COG1413 FOG: HEAT repeat [Ener 96.5 0.52 1.1E-05 59.0 25.7 157 904-1093 161-317 (335)
64 COG5240 SEC21 Vesicle coat com 96.4 3.6 7.9E-05 52.2 30.9 109 386-505 43-158 (898)
65 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0071 1.5E-07 54.2 5.6 55 456-511 1-55 (55)
66 KOG1062 Vesicle coat complex A 96.3 6.7 0.00015 52.2 36.7 123 387-516 88-211 (866)
67 PF14500 MMS19_N: Dos2-interac 96.3 1 2.2E-05 54.1 25.5 240 211-533 3-257 (262)
68 KOG2032 Uncharacterized conser 96.2 0.08 1.7E-06 65.9 15.3 191 897-1092 222-428 (533)
69 KOG2259 Uncharacterized conser 96.2 0.13 2.8E-06 65.8 17.2 287 728-1043 203-513 (823)
70 KOG4535 HEAT and armadillo rep 96.2 0.4 8.7E-06 59.2 20.6 305 19-398 4-329 (728)
71 PF13646 HEAT_2: HEAT repeats; 96.1 0.039 8.5E-07 54.3 10.2 86 407-509 1-88 (88)
72 PF13646 HEAT_2: HEAT repeats; 96.1 0.02 4.2E-07 56.5 8.0 85 895-1000 2-88 (88)
73 cd00020 ARM Armadillo/beta-cat 96.1 0.035 7.5E-07 57.6 10.2 106 406-512 8-119 (120)
74 PF12717 Cnd1: non-SMC mitotic 96.1 0.14 3E-06 58.1 15.5 106 377-486 1-107 (178)
75 KOG2032 Uncharacterized conser 96.0 0.24 5.2E-06 61.9 17.8 211 328-539 221-442 (533)
76 PF05004 IFRD: Interferon-rela 96.0 0.23 5E-06 61.1 18.1 185 896-1083 47-260 (309)
77 cd00020 ARM Armadillo/beta-cat 95.9 0.014 3.1E-07 60.6 6.5 108 895-1003 10-119 (120)
78 PF13251 DUF4042: Domain of un 95.8 0.064 1.4E-06 60.4 11.2 138 379-516 1-177 (182)
79 PF02985 HEAT: HEAT repeat; I 95.8 0.014 2.9E-07 45.9 4.1 30 485-514 1-30 (31)
80 KOG1061 Vesicle coat complex A 95.7 1.1 2.4E-05 59.2 23.3 324 93-518 162-491 (734)
81 PF10274 ParcG: Parkin co-regu 95.6 0.067 1.4E-06 59.7 10.3 120 893-1013 39-173 (183)
82 KOG1059 Vesicle coat complex A 95.6 1.1 2.4E-05 58.2 22.0 263 193-512 131-400 (877)
83 KOG1059 Vesicle coat complex A 95.6 1.2 2.6E-05 58.0 22.1 180 893-1084 219-405 (877)
84 KOG1078 Vesicle coat complex C 95.6 1.8 3.9E-05 57.1 23.8 52 1025-1079 479-531 (865)
85 KOG1061 Vesicle coat complex A 95.5 2.4 5.3E-05 56.1 24.8 374 643-1069 89-478 (734)
86 PF12231 Rif1_N: Rap1-interact 95.3 6.6 0.00014 49.9 28.1 312 649-1003 2-351 (372)
87 COG1413 FOG: HEAT repeat [Ener 95.2 0.32 7E-06 60.8 15.9 174 895-1101 46-232 (335)
88 KOG1077 Vesicle coat complex A 95.1 5.5 0.00012 52.0 25.6 335 99-474 82-436 (938)
89 KOG1062 Vesicle coat complex A 95.1 13 0.00028 49.7 29.3 322 98-476 77-419 (866)
90 KOG2025 Chromosome condensatio 95.1 0.24 5.1E-06 63.9 13.7 196 888-1097 81-276 (892)
91 PF13513 HEAT_EZ: HEAT-like re 94.8 0.034 7.3E-07 49.8 4.2 53 379-431 2-54 (55)
92 KOG1058 Vesicle coat complex C 94.7 16 0.00035 48.4 28.2 369 644-1083 24-428 (948)
93 KOG0392 SNF2 family DNA-depend 94.6 0.24 5.3E-06 67.3 12.8 194 907-1108 748-960 (1549)
94 TIGR02270 conserved hypothetic 94.5 1.8 3.9E-05 55.3 20.0 145 895-1077 120-264 (410)
95 cd03567 VHS_GGA VHS domain fam 94.5 0.76 1.6E-05 49.7 14.1 98 901-1007 14-119 (139)
96 PF02985 HEAT: HEAT repeat; I 94.2 0.064 1.4E-06 42.1 3.9 29 1053-1081 2-30 (31)
97 KOG4535 HEAT and armadillo rep 94.2 21 0.00046 44.9 31.5 112 902-1014 494-613 (728)
98 TIGR02270 conserved hypothetic 94.0 0.37 8.1E-06 61.4 12.4 118 365-510 87-204 (410)
99 KOG4524 Uncharacterized conser 93.8 24 0.00053 48.3 28.1 301 99-417 556-901 (1014)
100 COG5218 YCG1 Chromosome conden 93.8 1.4 3.1E-05 55.9 16.0 202 893-1109 92-295 (885)
101 KOG0392 SNF2 family DNA-depend 93.8 0.38 8.2E-06 65.6 11.9 177 339-518 748-930 (1549)
102 PF04118 Dopey_N: Dopey, N-ter 93.7 1.1 2.5E-05 54.7 15.1 167 907-1083 70-254 (307)
103 cd03568 VHS_STAM VHS domain fa 93.6 0.68 1.5E-05 50.4 11.7 99 901-1008 13-114 (144)
104 PF14500 MMS19_N: Dos2-interac 93.4 20 0.00044 43.2 25.0 235 802-1095 4-252 (262)
105 COG5096 Vesicle coat complex, 93.4 39 0.00084 46.2 29.3 167 901-1080 28-195 (757)
106 KOG4524 Uncharacterized conser 93.2 32 0.0007 47.2 27.7 113 376-494 560-684 (1014)
107 KOG1967 DNA repair/transcripti 92.9 0.46 1E-05 63.2 10.6 146 362-512 865-1023(1030)
108 KOG1949 Uncharacterized conser 92.9 30 0.00065 45.6 25.7 184 806-1040 182-370 (1005)
109 PF12719 Cnd3: Nuclear condens 92.6 1.3 2.7E-05 54.6 13.7 126 111-236 3-143 (298)
110 KOG2025 Chromosome condensatio 92.6 28 0.00061 46.1 25.0 197 178-466 53-254 (892)
111 PF12231 Rif1_N: Rap1-interact 92.4 24 0.00052 44.9 25.0 193 182-434 149-352 (372)
112 cd03561 VHS VHS domain family; 92.3 1.2 2.5E-05 48.0 11.3 100 901-1009 13-117 (133)
113 COG5096 Vesicle coat complex, 92.3 3.7 8.1E-05 55.4 17.9 166 333-513 28-195 (757)
114 KOG1525 Sister chromatid cohes 92.3 20 0.00043 51.6 25.7 236 702-1005 164-406 (1266)
115 KOG1991 Nuclear transport rece 92.0 66 0.0014 44.5 33.7 194 341-538 389-597 (1010)
116 KOG1077 Vesicle coat complex A 92.0 51 0.0011 43.7 26.2 260 769-1044 160-436 (938)
117 KOG1967 DNA repair/transcripti 91.9 0.75 1.6E-05 61.3 10.7 118 891-1009 866-987 (1030)
118 PF00790 VHS: VHS domain; Int 91.9 0.79 1.7E-05 49.8 9.4 105 901-1014 18-128 (140)
119 cd03569 VHS_Hrs_Vps27p VHS dom 91.9 1.5 3.2E-05 47.7 11.4 99 902-1009 18-119 (142)
120 KOG4653 Uncharacterized conser 91.8 11 0.00024 50.7 20.7 237 758-1083 729-967 (982)
121 smart00288 VHS Domain present 91.6 1.3 2.9E-05 47.6 10.7 99 901-1008 13-115 (133)
122 PF10274 ParcG: Parkin co-regu 91.2 3 6.4E-05 47.0 13.0 116 405-520 38-171 (183)
123 KOG2160 Armadillo/beta-catenin 91.1 7.2 0.00016 47.9 17.1 178 903-1084 94-286 (342)
124 cd00197 VHS_ENTH_ANTH VHS, ENT 91.0 2.1 4.5E-05 44.8 11.2 88 911-1003 19-114 (115)
125 PF13251 DUF4042: Domain of un 90.9 1.5 3.4E-05 49.5 10.7 134 949-1083 1-177 (182)
126 KOG0413 Uncharacterized conser 90.0 93 0.002 42.7 33.8 129 948-1084 945-1077(1529)
127 KOG0168 Putative ubiquitin fus 90.0 7.8 0.00017 51.8 16.9 176 337-516 181-367 (1051)
128 COG5064 SRP1 Karyopherin (impo 89.7 14 0.00031 44.5 17.2 302 895-1239 74-399 (526)
129 cd03565 VHS_Tom1 VHS domain fa 89.6 2.5 5.5E-05 45.9 10.6 100 901-1009 14-120 (141)
130 PF11865 DUF3385: Domain of un 89.5 3.7 7.9E-05 45.7 12.1 146 360-516 6-160 (160)
131 PF14664 RICTOR_N: Rapamycin-i 88.9 76 0.0016 40.4 24.5 169 904-1076 80-265 (371)
132 KOG1243 Protein kinase [Genera 88.8 1.3 2.8E-05 58.1 9.0 183 892-1083 330-518 (690)
133 cd03568 VHS_STAM VHS domain fa 88.7 6.4 0.00014 43.0 12.9 82 437-518 32-115 (144)
134 KOG1087 Cytosolic sorting prot 88.6 2.1 4.5E-05 55.0 10.5 106 899-1013 12-122 (470)
135 KOG0803 Predicted E3 ubiquitin 88.2 5.7 0.00012 56.9 15.2 200 896-1096 45-279 (1312)
136 COG5240 SEC21 Vesicle coat com 88.0 97 0.0021 40.3 25.7 117 401-526 260-379 (898)
137 PF05804 KAP: Kinesin-associat 87.8 56 0.0012 44.8 23.4 135 948-1083 505-652 (708)
138 cd03572 ENTH_epsin_related ENT 87.6 3 6.4E-05 44.0 9.1 98 902-1004 11-119 (122)
139 KOG1243 Protein kinase [Genera 86.9 1.6 3.4E-05 57.3 8.0 109 401-512 326-436 (690)
140 KOG1525 Sister chromatid cohes 86.8 29 0.00062 50.1 20.6 260 807-1081 59-330 (1266)
141 KOG0946 ER-Golgi vesicle-tethe 86.4 1.1E+02 0.0023 41.5 23.5 120 719-839 18-163 (970)
142 PF12719 Cnd3: Nuclear condens 86.3 9.6 0.00021 46.9 14.4 111 404-514 25-144 (298)
143 KOG4224 Armadillo repeat prote 86.0 12 0.00026 45.5 13.8 187 893-1082 252-448 (550)
144 COG5116 RPN2 26S proteasome re 85.8 3 6.4E-05 52.8 9.2 116 373-499 561-677 (926)
145 PF13001 Ecm29: Proteasome sta 84.7 86 0.0019 41.7 22.8 98 966-1064 14-115 (501)
146 cd00197 VHS_ENTH_ANTH VHS, ENT 84.6 6.6 0.00014 41.0 10.1 88 343-433 19-114 (115)
147 PF00790 VHS: VHS domain; Int 84.5 12 0.00026 40.6 12.4 96 333-435 18-119 (140)
148 COG5218 YCG1 Chromosome conden 84.1 30 0.00066 44.7 16.7 176 365-540 92-293 (885)
149 PF04118 Dopey_N: Dopey, N-ter 83.2 10 0.00022 46.6 12.3 147 360-509 93-250 (307)
150 KOG2149 Uncharacterized conser 83.2 19 0.00042 44.9 14.5 112 366-477 60-176 (393)
151 KOG0414 Chromosome condensatio 82.9 16 0.00035 50.9 14.7 144 362-514 917-1065(1251)
152 KOG2549 Transcription initiati 82.9 25 0.00053 45.5 15.5 179 896-1084 211-419 (576)
153 PF08623 TIP120: TATA-binding 82.8 7 0.00015 43.6 9.7 112 401-515 5-149 (169)
154 KOG1949 Uncharacterized conser 82.8 6.8 0.00015 51.1 10.7 141 940-1081 180-332 (1005)
155 PLN03076 ARF guanine nucleotid 82.7 2E+02 0.0043 43.7 26.7 294 644-971 1141-1497(1780)
156 cd03567 VHS_GGA VHS domain fam 82.5 22 0.00048 38.6 13.1 80 438-517 34-120 (139)
157 KOG2022 Nuclear transport rece 82.3 2.2E+02 0.0047 39.3 36.5 473 16-544 391-898 (982)
158 PLN03076 ARF guanine nucleotid 82.2 36 0.00077 51.1 19.0 182 337-518 1150-1381(1780)
159 cd03572 ENTH_epsin_related ENT 82.2 6.5 0.00014 41.5 8.6 74 438-512 34-118 (122)
160 KOG2549 Transcription initiati 82.0 43 0.00094 43.4 17.1 177 642-831 209-419 (576)
161 PF05918 API5: Apoptosis inhib 81.9 15 0.00032 48.4 13.6 132 377-517 35-166 (556)
162 cd03561 VHS VHS domain family; 81.6 21 0.00046 38.4 12.7 81 438-518 33-117 (133)
163 PF08064 UME: UME (NUC010) dom 81.4 9.9 0.00022 39.3 9.7 71 454-527 27-97 (107)
164 PF13001 Ecm29: Proteasome sta 81.3 2E+02 0.0044 38.3 36.1 116 397-516 15-137 (501)
165 cd03569 VHS_Hrs_Vps27p VHS dom 81.3 22 0.00049 38.7 12.8 81 438-518 37-119 (142)
166 KOG4653 Uncharacterized conser 81.0 13 0.00028 50.0 12.5 180 895-1086 730-924 (982)
167 PF08167 RIX1: rRNA processing 80.9 34 0.00074 38.3 14.5 129 360-491 21-162 (165)
168 KOG2149 Uncharacterized conser 80.7 7 0.00015 48.7 9.5 112 895-1007 61-173 (393)
169 PF08167 RIX1: rRNA processing 80.5 12 0.00027 41.8 10.9 112 893-1006 26-145 (165)
170 PF11640 TAN: Telomere-length 80.4 15 0.00034 40.6 11.5 93 896-988 8-120 (155)
171 KOG0803 Predicted E3 ubiquitin 80.4 26 0.00057 50.6 16.1 190 329-518 46-268 (1312)
172 PF04826 Arm_2: Armadillo-like 80.1 24 0.00052 42.4 13.7 170 329-503 59-252 (254)
173 KOG3961 Uncharacterized conser 80.1 8.4 0.00018 43.7 9.0 117 893-1011 115-246 (262)
174 KOG1078 Vesicle coat complex C 80.1 2.4E+02 0.0052 38.4 32.8 95 726-826 432-531 (865)
175 PF10521 DUF2454: Protein of u 80.1 22 0.00047 43.5 13.7 138 360-498 115-279 (282)
176 PF05918 API5: Apoptosis inhib 80.0 27 0.00058 46.2 15.0 128 363-495 58-189 (556)
177 PF10363 DUF2435: Protein of u 79.6 7.5 0.00016 39.0 7.8 80 444-525 5-84 (92)
178 PF01603 B56: Protein phosphat 79.4 39 0.00084 43.7 16.3 194 328-528 137-334 (409)
179 PF10521 DUF2454: Protein of u 79.4 19 0.00041 44.0 13.0 128 93-220 121-278 (282)
180 KOG2160 Armadillo/beta-catenin 78.8 1.2E+02 0.0025 37.8 18.9 176 333-516 92-285 (342)
181 PF12074 DUF3554: Domain of un 78.6 97 0.0021 38.9 19.3 204 756-968 22-240 (339)
182 PF08506 Cse1: Cse1; InterPro 77.9 21 0.00046 45.2 13.0 52 453-508 319-370 (370)
183 PF04826 Arm_2: Armadillo-like 76.9 29 0.00063 41.7 13.1 177 336-517 25-209 (254)
184 KOG2199 Signal transducing ada 76.8 13 0.00028 45.8 9.9 78 932-1009 43-123 (462)
185 KOG2062 26S proteasome regulat 76.5 27 0.00058 46.4 13.1 153 899-1068 526-682 (929)
186 KOG2021 Nuclear mRNA export fa 76.5 2.6E+02 0.0057 37.9 21.7 113 725-839 9-132 (980)
187 smart00288 VHS Domain present 76.4 31 0.00068 37.2 12.0 81 438-518 33-116 (133)
188 KOG4825 Component of synaptic 76.1 24 0.00051 44.0 11.8 215 638-857 391-633 (666)
189 KOG2011 Sister chromatid cohes 75.7 3.1E+02 0.0067 39.1 23.4 132 938-1075 291-430 (1048)
190 PF10363 DUF2435: Protein of u 74.1 13 0.00028 37.4 7.7 76 1332-1407 5-80 (92)
191 PF12830 Nipped-B_C: Sister ch 73.9 14 0.00031 42.2 9.2 81 441-526 7-87 (187)
192 PF08506 Cse1: Cse1; InterPro 73.6 21 0.00045 45.3 11.4 127 948-1075 225-370 (370)
193 KOG0168 Putative ubiquitin fus 73.5 1.7E+02 0.0036 40.1 19.1 181 643-826 170-363 (1051)
194 COG5095 TAF6 Transcription ini 73.4 52 0.0011 39.3 13.2 105 641-755 199-321 (450)
195 COG5095 TAF6 Transcription ini 73.3 18 0.00039 42.9 9.5 112 397-517 193-320 (450)
196 KOG1087 Cytosolic sorting prot 73.0 16 0.00035 47.2 10.1 97 332-435 13-113 (470)
197 cd08050 TAF6 TATA Binding Prot 72.1 51 0.0011 41.5 14.2 128 900-1037 186-336 (343)
198 PF08161 NUC173: NUC173 domain 72.0 14 0.00031 42.5 8.6 112 948-1060 14-125 (198)
199 COG5116 RPN2 26S proteasome re 72.0 25 0.00054 45.1 10.9 162 336-516 476-653 (926)
200 KOG1924 RhoA GTPase effector D 71.7 2.6E+02 0.0057 37.9 19.9 24 448-471 293-317 (1102)
201 PF11698 V-ATPase_H_C: V-ATPas 71.4 28 0.00062 36.6 9.6 79 925-1005 35-116 (119)
202 KOG0889 Histone acetyltransfer 71.3 7.6E+02 0.016 39.9 30.3 179 792-1017 979-1170(3550)
203 PF12830 Nipped-B_C: Sister ch 71.0 52 0.0011 37.6 12.9 114 403-516 6-122 (187)
204 PF05804 KAP: Kinesin-associat 69.7 52 0.0011 45.1 14.3 168 345-515 471-651 (708)
205 cd08050 TAF6 TATA Binding Prot 68.6 33 0.00071 43.2 11.4 131 643-782 181-336 (343)
206 smart00802 UME Domain in UVSB 68.3 34 0.00074 35.4 9.5 69 456-527 29-97 (107)
207 cd03565 VHS_Tom1 VHS domain fa 68.0 70 0.0015 34.9 12.3 81 438-518 34-120 (141)
208 KOG2137 Protein kinase [Signal 67.9 44 0.00096 44.7 12.5 170 905-1084 286-462 (700)
209 smart00802 UME Domain in UVSB 67.3 40 0.00087 34.9 9.7 78 934-1013 11-92 (107)
210 PF08064 UME: UME (NUC010) dom 67.1 47 0.001 34.4 10.3 78 935-1014 12-93 (107)
211 COG5064 SRP1 Karyopherin (impo 67.1 44 0.00096 40.5 11.1 185 322-515 71-271 (526)
212 KOG2062 26S proteasome regulat 66.8 42 0.00092 44.7 11.8 131 369-516 524-656 (929)
213 PF05536 Neurochondrin: Neuroc 65.3 81 0.0017 42.3 14.7 173 344-518 77-266 (543)
214 PF11698 V-ATPase_H_C: V-ATPas 64.9 29 0.00063 36.6 8.2 70 443-513 44-115 (119)
215 KOG4224 Armadillo repeat prote 64.8 63 0.0014 39.7 11.8 180 330-512 214-404 (550)
216 KOG2137 Protein kinase [Signal 64.3 1.1E+02 0.0023 41.3 14.9 147 361-515 345-498 (700)
217 PF11640 TAN: Telomere-length 64.1 66 0.0014 35.6 11.5 47 328-374 8-58 (155)
218 COG5098 Chromosome condensatio 63.7 97 0.0021 41.1 13.8 108 369-476 304-420 (1128)
219 KOG1293 Proteins containing ar 62.3 2.9E+02 0.0063 37.0 17.9 131 379-512 392-532 (678)
220 KOG4413 26S proteasome regulat 62.0 24 0.00052 42.4 7.7 88 425-512 63-156 (524)
221 KOG0414 Chromosome condensatio 60.6 7.3E+02 0.016 35.8 63.7 138 932-1077 917-1061(1251)
222 PF08623 TIP120: TATA-binding 59.5 43 0.00092 37.6 8.8 74 907-984 42-115 (169)
223 COG5098 Chromosome condensatio 58.4 56 0.0012 43.1 10.5 111 896-1007 303-418 (1128)
224 PF05536 Neurochondrin: Neuroc 58.0 6.2E+02 0.013 34.1 28.2 153 932-1088 96-269 (543)
225 PF01603 B56: Protein phosphat 57.9 2.5E+02 0.0053 36.4 16.8 283 657-1004 43-370 (409)
226 KOG1822 Uncharacterized conser 57.1 1E+03 0.022 36.3 24.2 75 933-1007 957-1041(2067)
227 PF08045 CDC14: Cell division 56.5 1.3E+02 0.0028 36.1 12.7 89 1315-1404 111-209 (257)
228 PF12397 U3snoRNP10: U3 small 56.1 40 0.00086 35.6 7.7 83 1329-1414 5-95 (121)
229 PF08767 CRM1_C: CRM1 C termin 55.1 1.1E+02 0.0024 38.2 12.5 114 383-497 91-227 (319)
230 KOG4413 26S proteasome regulat 54.8 1.1E+02 0.0024 37.1 11.5 73 363-435 81-158 (524)
231 PF12765 Cohesin_HEAT: HEAT re 54.6 13 0.00027 31.7 2.9 26 483-508 17-42 (42)
232 KOG2753 Uncharacterized conser 53.2 5.3E+02 0.012 32.0 17.0 108 989-1097 120-232 (378)
233 KOG1822 Uncharacterized conser 52.6 8.5E+02 0.018 37.0 21.1 298 649-1006 812-1129(2067)
234 cd00256 VATPase_H VATPase_H, r 52.5 2E+02 0.0044 37.2 14.4 149 363-513 227-425 (429)
235 PF12783 Sec7_N: Guanine nucle 52.4 93 0.002 34.8 10.4 100 905-1004 35-146 (168)
236 PF11864 DUF3384: Domain of un 52.0 6.9E+02 0.015 32.9 22.0 133 692-826 187-329 (464)
237 PF08767 CRM1_C: CRM1 C termin 51.6 3.4E+02 0.0074 33.9 16.0 114 404-517 70-198 (319)
238 KOG2199 Signal transducing ada 50.9 1.5E+02 0.0033 37.0 12.1 82 390-473 31-120 (462)
239 PF11865 DUF3385: Domain of un 50.9 56 0.0012 36.4 8.2 69 936-1004 88-157 (160)
240 PF03378 CAS_CSE1: CAS/CSE pro 50.7 3.4E+02 0.0073 35.5 16.2 205 883-1093 14-242 (435)
241 PF11935 DUF3453: Domain of un 50.4 3.9E+02 0.0084 31.9 15.6 122 895-1020 46-210 (239)
242 PF10441 Urb2: Urb2/Npa2 famil 50.4 4.9E+02 0.011 30.7 18.8 161 380-540 4-213 (223)
243 KOG2011 Sister chromatid cohes 50.2 82 0.0018 44.4 11.0 133 1221-1395 299-431 (1048)
244 PF14228 MOR2-PAG1_mid: Cell m 47.2 2.2E+02 0.0048 41.3 14.7 71 1247-1324 501-572 (1120)
245 KOG0891 DNA-dependent protein 47.2 1.6E+03 0.034 35.7 39.4 104 933-1037 647-759 (2341)
246 PF12074 DUF3554: Domain of un 46.4 1.7E+02 0.0037 36.7 12.6 96 404-499 21-122 (339)
247 PF08161 NUC173: NUC173 domain 46.0 1.8E+02 0.0039 33.7 11.5 80 367-448 3-82 (198)
248 PF08389 Xpo1: Exportin 1-like 45.4 1.6E+02 0.0035 31.5 10.8 124 359-508 21-148 (148)
249 PF00514 Arm: Armadillo/beta-c 45.1 36 0.00079 28.4 4.3 29 484-512 12-40 (41)
250 PF01347 Vitellogenin_N: Lipop 44.5 9.9E+02 0.022 32.6 23.4 113 902-1036 500-617 (618)
251 PF12765 Cohesin_HEAT: HEAT re 44.5 32 0.0007 29.3 3.8 26 1050-1075 17-42 (42)
252 PF11841 DUF3361: Domain of un 44.2 4.7E+02 0.01 29.2 13.6 107 420-527 32-145 (160)
253 PF03378 CAS_CSE1: CAS/CSE pro 43.5 2.2E+02 0.0047 37.2 12.9 165 933-1102 116-294 (435)
254 KOG4199 Uncharacterized conser 42.9 4.8E+02 0.01 32.4 14.2 171 340-520 123-320 (461)
255 PF14664 RICTOR_N: Rapamycin-i 42.8 5E+02 0.011 33.2 15.8 170 338-509 82-265 (371)
256 KOG0567 HEAT repeat-containing 42.5 4.5E+02 0.0097 31.7 13.7 88 1297-1397 189-278 (289)
257 PF12530 DUF3730: Protein of u 42.1 5.2E+02 0.011 30.7 15.0 120 375-498 95-217 (234)
258 KOG1517 Guanine nucleotide bin 40.6 1.9E+02 0.0041 40.6 11.6 132 341-472 574-733 (1387)
259 PF11701 UNC45-central: Myosin 40.4 73 0.0016 35.4 7.0 127 103-232 17-155 (157)
260 PF01347 Vitellogenin_N: Lipop 40.2 2.4E+02 0.0051 38.6 13.5 151 907-1075 450-617 (618)
261 KOG0567 HEAT repeat-containing 39.0 2.1E+02 0.0045 34.3 10.4 105 340-469 172-278 (289)
262 PF04388 Hamartin: Hamartin pr 38.9 4.6E+02 0.0099 36.3 15.5 114 405-528 39-154 (668)
263 PF11841 DUF3361: Domain of un 38.8 3.2E+02 0.007 30.5 11.3 104 133-240 15-135 (160)
264 KOG1851 Uncharacterized conser 37.9 1.7E+03 0.037 33.4 27.1 124 963-1088 1470-1606(1710)
265 KOG1517 Guanine nucleotide bin 37.3 1.8E+02 0.0039 40.7 10.7 74 933-1006 598-673 (1387)
266 PF12333 Ipi1_N: Rix1 complex 37.3 1.1E+02 0.0023 31.5 7.1 37 440-476 9-45 (102)
267 smart00582 RPR domain present 36.2 2.1E+02 0.0046 29.9 9.5 99 409-512 4-106 (121)
268 PF08389 Xpo1: Exportin 1-like 36.0 2.2E+02 0.0047 30.5 9.9 118 909-1035 5-147 (148)
269 PF04388 Hamartin: Hamartin pr 35.2 3.3E+02 0.0072 37.6 13.3 84 933-1018 69-156 (668)
270 KOG0413 Uncharacterized conser 35.1 1.5E+03 0.033 32.1 31.3 181 893-1078 473-683 (1529)
271 smart00638 LPD_N Lipoprotein N 34.3 4E+02 0.0086 36.1 14.1 136 933-1075 392-540 (574)
272 PF03224 V-ATPase_H_N: V-ATPas 34.2 8.6E+02 0.019 30.1 15.9 154 328-498 109-273 (312)
273 smart00638 LPD_N Lipoprotein N 33.9 4.2E+02 0.0091 35.9 14.2 153 905-1073 410-571 (574)
274 COG5656 SXM1 Importin, protein 33.7 1.5E+03 0.032 31.4 26.6 372 952-1411 388-813 (970)
275 cd03562 CID CID (CTD-Interacti 33.1 4.1E+02 0.0088 27.6 10.9 88 417-509 17-104 (114)
276 KOG1851 Uncharacterized conser 33.0 2E+03 0.043 32.8 23.7 76 440-515 1524-1600(1710)
277 KOG2759 Vacuolar H+-ATPase V1 33.0 4.8E+02 0.01 33.4 12.7 27 487-513 412-438 (442)
278 PF12243 CTK3: CTD kinase subu 32.6 3.6E+02 0.0078 29.4 10.4 66 403-473 6-71 (139)
279 PF11935 DUF3453: Domain of un 32.4 9.3E+02 0.02 28.7 16.3 73 373-473 2-74 (239)
280 COG3682 Predicted transcriptio 32.3 55 0.0012 34.6 4.0 43 1679-1744 9-51 (123)
281 PF08569 Mo25: Mo25-like; Int 31.6 3E+02 0.0065 34.6 11.0 118 328-447 168-295 (335)
282 KOG4825 Component of synaptic 31.1 3.2E+02 0.007 34.6 10.7 172 334-509 403-593 (666)
283 PF12783 Sec7_N: Guanine nucle 30.5 3.7E+02 0.0081 30.0 10.8 100 336-435 34-147 (168)
284 PF12422 Condensin2nSMC: Conde 29.6 6.5E+02 0.014 27.8 12.2 126 1213-1356 18-145 (152)
285 PF03224 V-ATPase_H_N: V-ATPas 29.6 2.3E+02 0.005 35.2 9.8 104 409-514 62-180 (312)
286 PF11707 Npa1: Ribosome 60S bi 29.2 8.8E+02 0.019 30.4 14.8 104 93-196 58-188 (330)
287 PF04499 SAPS: SIT4 phosphatas 29.2 3E+02 0.0065 36.4 10.9 74 997-1083 21-95 (475)
288 KOG4199 Uncharacterized conser 28.0 1E+03 0.022 29.8 13.7 144 367-512 286-443 (461)
289 cd00256 VATPase_H VATPase_H, r 27.9 50 0.0011 42.6 3.5 65 758-826 355-424 (429)
290 KOG1848 Uncharacterized conser 27.8 6.5E+02 0.014 36.9 13.7 155 360-514 924-1133(1610)
291 KOG2286 Exocyst complex subuni 27.2 1.7E+03 0.038 30.6 17.4 97 1331-1429 545-652 (667)
292 KOG2842 Interferon-related pro 27.2 1.3E+03 0.028 29.4 14.8 184 333-516 69-276 (427)
293 PF14225 MOR2-PAG1_C: Cell mor 27.1 1.2E+03 0.026 28.3 15.9 147 360-516 60-220 (262)
294 KOG1837 Uncharacterized conser 26.7 4E+02 0.0087 39.3 11.8 98 420-518 1519-1616(1621)
295 KOG1789 Endocytosis protein RM 25.6 5.5E+02 0.012 36.3 12.0 78 450-529 1820-1901(2235)
296 PF00514 Arm: Armadillo/beta-c 25.4 97 0.0021 25.8 3.7 27 209-235 14-40 (41)
297 PF09324 DUF1981: Domain of un 25.3 2.5E+02 0.0054 27.9 7.1 68 933-1000 16-84 (86)
298 KOG1924 RhoA GTPase effector D 25.1 8.1E+02 0.018 33.6 13.2 135 327-468 103-260 (1102)
299 PF01417 ENTH: ENTH domain; I 24.3 2.9E+02 0.0063 29.3 8.0 72 439-511 36-119 (125)
300 COG5231 VMA13 Vacuolar H+-ATPa 24.1 1.4E+03 0.031 28.3 15.7 60 1330-1397 356-426 (432)
301 PF01417 ENTH: ENTH domain; I 24.1 3.9E+02 0.0084 28.3 9.0 99 898-1002 9-119 (125)
302 PF12612 TFCD_C: Tubulin foldi 23.8 5.2E+02 0.011 29.7 10.6 120 401-527 3-132 (193)
303 PF12333 Ipi1_N: Rix1 complex 23.6 4.5E+02 0.0097 27.0 8.9 42 968-1009 4-45 (102)
304 PF12422 Condensin2nSMC: Conde 23.4 4.4E+02 0.0094 29.2 9.4 117 946-1077 26-145 (152)
305 PF06371 Drf_GBD: Diaphanous G 23.2 1.1E+02 0.0023 34.7 4.8 88 148-235 92-186 (187)
306 KOG1837 Uncharacterized conser 22.6 3.8E+02 0.0082 39.5 10.4 70 767-837 1551-1621(1621)
307 PF03965 Penicillinase_R: Peni 22.4 93 0.002 32.5 3.8 45 1678-1746 5-49 (115)
308 PF14225 MOR2-PAG1_C: Cell mor 21.7 1.5E+03 0.032 27.5 16.3 178 330-517 70-258 (262)
309 PF07571 DUF1546: Protein of u 21.4 2.2E+02 0.0047 28.7 6.0 71 180-252 19-90 (92)
310 COG5593 Nucleic-acid-binding p 21.0 1.3E+03 0.027 30.4 13.3 122 1273-1426 211-339 (821)
311 KOG2213 Apoptosis inhibitor 5/ 20.8 1.4E+03 0.031 29.1 13.4 128 360-498 25-165 (460)
312 PF12030 DUF3517: Domain of un 20.5 4.1E+02 0.0088 33.4 9.3 27 210-236 241-267 (337)
313 COG5537 IRR1 Cohesin [Cell div 20.4 2.1E+03 0.045 29.3 15.3 141 641-787 276-426 (740)
314 PF08569 Mo25: Mo25-like; Int 20.2 1.8E+03 0.039 27.9 18.2 203 330-541 82-308 (335)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-52 Score=535.29 Aligned_cols=744 Identities=25% Similarity=0.298 Sum_probs=569.5
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh-cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 000146 647 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCL 725 (2052)
Q Consensus 647 ~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~-~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il 725 (2052)
..+.++.|+.|.++...+...+......+.....+++... ..++|+..|++|..-.+.++..-..+
T Consensus 12 ~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~------------- 78 (815)
T KOG1820|consen 12 SELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVN------------- 78 (815)
T ss_pred hhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccccc-------------
Confidence 3478889999999999999888775444333344444432 22457778877766555554422111
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhh
Q 000146 726 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT 805 (2052)
Q Consensus 726 ~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~ 805 (2052)
+ ++...+++..+........+++.++.. ..-|.|+..+.++..+..++.+||...+.++.+++.+..+
T Consensus 79 ------~-----~~~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 79 ------I-----RDTKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred ------c-----cCcchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 1 112222233333333344455555554 4789999999999999999999999888888888776654
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh-hccHHHHHHHHHHHhcCCCC----CCCCC-----------------
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVVP----------------- 863 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkP~ll~~Le~efeK~~~~----~~p~p----------------- 863 (2052)
. +.+||.++.++++++|+|.|..+..++. .-.+.++..+...+.+.... ..+..
T Consensus 147 -~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 -A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred -c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 3 8899999999999999999999887763 23344555555544433211 00000
Q ss_pred --ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000146 864 --KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941 (2052)
Q Consensus 864 --~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~ 941 (2052)
.+..+...+......+..|++||+||++++++.|...+.+++||+|+||++.+..++++....+....++.+...++.
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000000000000012345889999999999999999999999999999999999999975434666667888889999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc
Q 000146 942 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 1021 (2052)
Q Consensus 942 rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~ 1021 (2052)
++.|+|.+|+..|+.+|..||.+||..|.+|+..++|.|+.+++|+|+.+|+++..|+++|+..+++..+++.+.+++++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~ 382 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKG 382 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccChhHHHHHHHHHHHHhccCCCC----CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1022 AKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1022 ~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+ ||..|.+++.|+.+++...... ..+..+++.+++..+|++.+||++|.+++.++|+++|++.+.+++.++++.
T Consensus 383 k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 383 K--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred C--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 7 7999999999999999988742 345667777999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccc
Q 000146 1098 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1172 (2052)
Q Consensus 1098 ~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (2052)
....+.+.+.+.-.....+.+++++..+.....+..++ .+.....++...|++.+...+ +...+. ....+.+
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~- 537 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL- 537 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc-
Confidence 45555554444211111222222222110000000000 000000000111111111000 000011 1111212
Q ss_pred cCCCchHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHH
Q 000146 1173 VKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1248 (2052)
Q Consensus 1173 ~~~~~k~~R~----~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~l 1248 (2052)
.+..+++|. +..+.+|++..+..+..+ ++...++......||+.||+.|.++++.++.....+..+..++.
T Consensus 538 -~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 538 -QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred -ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 244566665 466788998887765544 37789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc
Q 000146 1249 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1328 (2052)
Q Consensus 1249 Dlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~ 1328 (2052)
|++++|+++||+|+|+.+..+.++++...|+......+.++..|...|.|++..+.|..++.+++.++.+.+....++.+
T Consensus 613 ~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~ 692 (815)
T KOG1820|consen 613 DLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSV 692 (815)
T ss_pred hhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHH
Q 000146 1329 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1408 (2052)
Q Consensus 1329 skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~ 1408 (2052)
.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++-...++|..+|+++.+++...|.+.|+.+|++
T Consensus 693 ~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (815)
T KOG1820|consen 693 LMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKI 772 (815)
T ss_pred cccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHH
Confidence 99999999999999999999999999999999998754445667999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHhhhh
Q 000146 1409 VGKLTDAQKSMLDDRFKWKVR 1429 (2052)
Q Consensus 1409 ~g~ls~~~~s~leer~kr~~~ 1429 (2052)
.+.+.+.++++++.+|++..+
T Consensus 773 ~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 773 SILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999998654
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=2e-42 Score=447.84 Aligned_cols=744 Identities=19% Similarity=0.223 Sum_probs=500.5
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLD 170 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~~v~e 170 (2052)
...++++++|+|+..|+.| .++..|....+.... .-..-.+-...++||. -+..+++...++.+.+...++...+++
T Consensus 23 ~~~~~ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 101 (815)
T KOG1820|consen 23 LEAWKQLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVE 101 (815)
T ss_pred HHHHHHHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccchhhhcccccccccCcchhHHHHHHHhhhhHHHHH
Confidence 8899999999999999999 999998888765222 1122233445678887 488899999999888877788899999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 171 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 171 ~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.+...+.-|.||.+++++..+..++.+||...++.+.+++.+..++ |++||.++..++++||||+|.. ++.+++..
T Consensus 102 ~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~ 177 (815)
T KOG1820|consen 102 AAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKA 177 (815)
T ss_pred HHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc---ccccchhhcccchhhhhhcCCC-cCcccchh
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999974 65665544
Q ss_pred ChHHHHHHHHHHHHhccCC-CCCCccchhhhhHhhhhcccccCCCCCCCC--CCCCCCCCCCCCCCCCCcccccCcCccc
Q 000146 251 MRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSE--ESTADVPPEIDEYELVDPVDILTPLEKS 327 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~-~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iD~~dl~~~vdIl~kl~~~ 327 (2052)
-.+.+..++...+.+.... ....+..-+.+..........+..+..... .........+|.||+++++||+++++ .
T Consensus 178 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~ 256 (815)
T KOG1820|consen 178 SAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-K 256 (815)
T ss_pred hhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcC-h
Confidence 4455555555444332111 111111111111000000000000000000 01111122379999999999999999 5
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 405 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k--i~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 405 (2052)
+|...+.++|||+|+|||+.+..++..++ +..+.++.+...++.+..|+|++|+..|++||+.||.+||..|.+|+..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 89999999999999999999999886555 3334445555555566669999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhh
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKD 484 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~ 484 (2052)
++|.+|+++||+|+.+++++..|+++++.. +++.++.+.|..++++|||++|.+|..|+.+++...++. .....++.
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKT 414 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence 999999999999999999999999999984 899999999999999999999999999999999987633 33355789
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCC
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 564 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~ 564 (2052)
++|.+++..+|++++||.+|.++++++++++|++.++.++..+++.-++.+.+.+...-.......++..++.+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~------ 488 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLLHFLAAPKEKSSAPDP------ 488 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccccccccCCCcCCCCCc------
Confidence 99999999999999999999999999999999999999999999764445555443211000011111111100
Q ss_pred CCCCcchh-hhhhhccccCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCcCC-cCCCCCC-----CCCCCCC-CHHHH
Q 000146 565 VEASESSF-VRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKD--GSGKQETS-KLTEAPE-----DVEPSEM-SLEEI 633 (2052)
Q Consensus 565 ~~~~~~~~-~~~~~~s~~~~~~P-~~~~~~s~k~~~~k~~~~~~--~~~~~~~s-~~~~~~~-----~~~~~~~-s~ee~ 633 (2052)
....+.. ++...+.......+ ++.+|....... ++...+. ..+....+ +...... .+..... ..++.
T Consensus 489 -~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~ 566 (815)
T KOG1820|consen 489 -QVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDK 566 (815)
T ss_pred -cccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchhhccccccccccchhhhhhhhccCccccccchhhh
Confidence 0000000 00000000000000 000110000000 0000000 00000000 0000000 0000011 12444
Q ss_pred HHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000146 634 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 712 (2052)
Q Consensus 634 e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~ 712 (2052)
.+.....++......+.+.+++.-.++++.+...-...... ......++.++.. +|.|+|..+....++++......
T Consensus 567 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~ 644 (815)
T KOG1820|consen 567 KEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVL--RFEETNEALLGKVLELLIAEFQT 644 (815)
T ss_pred hcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhh
Confidence 43344556667788899999999999999988554442222 1223456666642 58899999999999888776654
Q ss_pred cCCC----chhhHHHHHHHHHHhhhchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q 000146 713 ATKF----PKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 786 (2052)
Q Consensus 713 ~~~~----~~~~~~~il~~LveKlgd~K--~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~ 786 (2052)
.... .........+.+..+.|..+ .+..-..+.....++.+.......+.+.+ ..++-.+|.+++..+...+.
T Consensus 645 ~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~ 723 (815)
T KOG1820|consen 645 LRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFS 723 (815)
T ss_pred cchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeec
Confidence 2110 11111111122333444432 33333344445555556555666677775 78888899999998888877
Q ss_pred HhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCC
Q 000146 787 DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP 856 (2052)
Q Consensus 787 ~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~ 856 (2052)
.-|...+............ ..+.+..+|..+..++...|.+.|+..........+.+...+++.|.+-.
T Consensus 724 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 724 SEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred cCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCccc
Confidence 7676543323333333333 67888999999999999999999999998888889999999999997653
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-26 Score=293.83 Aligned_cols=890 Identities=15% Similarity=0.141 Sum_probs=527.9
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--hhh--
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE--AVD-- 166 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~--~r~~tk~~A~~~~l~~~e~~--~~~-- 166 (2052)
.+++.+++++.|+.-+|.|+-+|..+....+.....|..+ +..|+.+|++ +.+ +|-.|...+..|++.. +.+
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~-l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD-LLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH-HHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHH
Confidence 8889999999999999999999999999998866667744 4668899998 455 9999999888888763 121
Q ss_pred hHHHHHHHHh--------hccChhhHHHHHHHHHHHHHHhCCCCcC--hHHHHhhhhhhhCCC--ChhHHHHHHHHHHHH
Q 000146 167 VFLDVMEKAI--------KNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLEL 234 (2052)
Q Consensus 167 ~v~e~Ll~~l--------~~K~PKvv~~~l~~L~~~l~~FG~~~i~--~k~il~~l~~ll~~~--dk~VR~~a~~l~vel 234 (2052)
.-+..++|++ ....-+....++.+|.+++...+. .+. +..+++...++.++. |..+|..|+++++.+
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~ 276 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSL 276 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 1223334432 333445667888888888877665 332 556788888888876 569999999999999
Q ss_pred HHhhCCchhhHH--HHhhChHHHHHHHHHHH--HhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCC
Q 000146 235 CRWIGKDPVKTI--LFEKMRDTMKKELEVEL--VNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEID 310 (2052)
Q Consensus 235 y~~lG~~~l~~~--L~~~Lkp~qlkeLe~~f--~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 310 (2052)
.++. +.+.|.. +...|-++.++...+.- ++|. .++..+++..+....-+.+.+|
T Consensus 277 ~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~---------------------~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 277 SEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS---------------------NEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhc---------------------cccccccccccCcHHHHHHHHH
Confidence 9994 3322211 11223333332111000 0000 0000000000000000112233
Q ss_pred CCC-CCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHH
Q 000146 311 EYE-LVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 388 (2052)
Q Consensus 311 ~~d-l~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l 388 (2052)
... -+++..|++.+- +.+...+.|.+|++|++||..|..++ ++++...+.+..|++++...++|+++.|+..||++|
T Consensus 335 rlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 332 356666665554 45667889999999999999999998 577777788999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhhHH-HHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHH-HHhhcCChHHH
Q 000146 389 GNLARGLRTHFSGSSRFLL-PVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVEDVK-TSVKNKVPLVR 459 (2052)
Q Consensus 389 ~~La~~L~~~f~~~~~~ll-p~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~------l~~ll~~l~-~~L~~Knp~vR 459 (2052)
|+|+..+.+.+++++...+ |.|+..+.+. ++.|..++..|+.+++.. |.. |+.+++..+ ..+++.++.+|
T Consensus 414 gQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~ 492 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQ 492 (1075)
T ss_pred HhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 9999999999986655554 5666666665 478999999999999987 533 556666333 34457778999
Q ss_pred HHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHH
Q 000146 460 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535 (2052)
Q Consensus 460 ~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~----Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI 535 (2052)
..+...++.+.... ...|.+|++.+||.|.++|. +...++|....+|++.++..+|.+.|.++...|=.
T Consensus 493 e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq------ 565 (1075)
T KOG2171|consen 493 EQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ------ 565 (1075)
T ss_pred HHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH------
Confidence 99999999876654 44588999999999999994 45579999999999999999997667666554321
Q ss_pred HHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000146 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 615 (2052)
Q Consensus 536 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~ 615 (2052)
-.++.-++......|..+ +. -+.- +..-+-...-+.+--|. -.|+--+...
T Consensus 566 -ll~~~~~~~~~~dd~~~s-------y~--~~~w-armc~ilg~~F~p~L~~-Vmppl~~ta~----------------- 616 (1075)
T KOG2171|consen 566 -LLLELQGSDQDDDDPLRS-------YM--IAFW-ARMCRILGDDFAPFLPV-VMPPLLKTAR----------------- 616 (1075)
T ss_pred -HHHhhcccchhhccccHH-------HH--HHHH-HHHHHHhchhhHhHHHH-HhHHHHHhhc-----------------
Confidence 111111111000000000 00 0000 00000000000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcC-CCCccc
Q 000146 616 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEK 694 (2052)
Q Consensus 616 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~-pg~~Ds 694 (2052)
.+ +...+++++.++...+..+++++..=.+.....|.+++++.. ..|++|+.|-... -+|-..
T Consensus 617 -~~-----p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~----------~A~~~Lv~~a~~lk~~F~pY 680 (1075)
T KOG2171|consen 617 -LD-----PDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKE----------TACEALGEYAKELKEAFAPY 680 (1075)
T ss_pred -cC-----CcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHH----------HHHHHHHHHHHhhhhhhhhH
Confidence 00 012334455555555666666655544447888888888765 3567777764321 245555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHH
Q 000146 695 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 695 N~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~ 774 (2052)
-.+|...++-.+..+... -.+.++..++|.++...--.--+..+ .+..+ -.++++.++..+.....+.+.
T Consensus 681 ve~v~~l~v~~l~f~fhd---gVR~aa~~~~p~ll~~~~~A~~~~p~--~l~~l-----~~~~~~~l~~~l~~E~e~~vl 750 (1075)
T KOG2171|consen 681 VEQVVELMVPLLKFYFHD---GVRKAAAESMPQLLTCALKACQGGPE--YLKQL-----WEAIRPALIKALEEEPETEVL 750 (1075)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHhccChH--HHHHH-----HHHHHHHHHHHhhcCCcHHHH
Confidence 556666444333333221 13556677777766431100000000 11111 124555666666667888999
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhh-HhhhhhccHH----H---HH
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPA----L---LS 846 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l-~~~L~~lkP~----l---l~ 846 (2052)
.+.++.+.++|+.+|..++....+-..+... + ..+..-+..++... ..+.++.... . =+
T Consensus 751 ~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~------------~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~ 817 (1075)
T KOG2171|consen 751 SEILESFAECIEVMGDNCLNEDGLEALLGGL-L------------AQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDA 817 (1075)
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H------------HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhH
Confidence 9999999999999998777644333332211 0 00000011111110 0011110000 0 00
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccc
Q 000146 847 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK 925 (2052)
Q Consensus 847 ~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~ 925 (2052)
.|.+.+.++. .+.++ +. +.+..|- +..+-|.+...+.++ -|. |..|+..+.++++...+
T Consensus 818 ~ll~~i~~i~-------~~l~k-------~~--k~~f~p~---f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~ 877 (1075)
T KOG2171|consen 818 YLLDAISDIL-------AALAK-------AL--KGSFLPF---FENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGE 877 (1075)
T ss_pred HHHHHHHHHH-------HHHHH-------Hc--cccccHH---HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccc
Confidence 0111111110 00000 00 0011111 223445566666665 577 99999999999987544
Q ss_pred cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH---HHHHHHHHHHHHH
Q 000146 926 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---HMRECTLTVLDAW 1002 (2052)
Q Consensus 926 ~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~---~VR~aa~~aL~~i 1002 (2052)
...+. +..+...+...+.|+..-|++.|.--+|.+|...|..+.+.+...+|.++..+..... .-+.+..+++.++
T Consensus 878 a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gai 956 (1075)
T KOG2171|consen 878 ASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAI 956 (1075)
T ss_pred ccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHH
Confidence 44443 4778889999999999999999999999999999999999999999999888875333 3444444555554
Q ss_pred H---Hhc----CchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---C---CchhhhHHHHHhhcCCCCHHHHH
Q 000146 1003 L---AAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F---PDAAHLLKPASIAMTDKSSDVRK 1069 (2052)
Q Consensus 1003 ~---~~~----~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~---~~~~~ll~pl~~~L~D~~~dVRk 1069 (2052)
+ .+. +.+.++|.+...|-... +-+.-..+..+|...+++..+ . ..+..++..+...+.+.+-.-|.
T Consensus 957 aki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~ 1035 (1075)
T KOG2171|consen 957 AKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRS 1035 (1075)
T ss_pred HHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccc
Confidence 4 443 35677777766664221 123345677888887776543 1 12233333344455555444444
Q ss_pred HHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000146 1070 AAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1106 (2052)
Q Consensus 1070 aA~~~L~~l~~~~-G~e~~~~~l~~L~~~~~~~I~~~l 1106 (2052)
.+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1036 ~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1036 TLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 4433333332222 346677788999999998888764
No 4
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=1.8e-22 Score=251.27 Aligned_cols=869 Identities=17% Similarity=0.183 Sum_probs=522.1
Q ss_pred ChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchh
Q 000146 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP 94 (2052)
Q Consensus 15 pl~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2052)
-|.|+.+++.=--|.-|-.+|.+.++... .+ ++.| ....+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-------i~------Ld~d-------------------------Se~kvv~ 50 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-------IK------LDDD-------------------------SERKVVK 50 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-------hh------cccc-------------------------chhHHHH
Confidence 46677777777778878777777775310 00 0111 0012367
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHhhh-h-----hhh
Q 000146 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK-AQAVFMLWVELE-A-----VDV 167 (2052)
Q Consensus 95 l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~-A~~~~l~~~e~~-~-----~~~ 167 (2052)
.+.|.+.|+|..||..|+.|+..++.+.+. ..++.++..|+.+.++++.+.|+. ++.+.+...++. . ...
T Consensus 51 ~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 51 MLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 778899999999999999999999977765 446677888888878888899985 888888888774 1 246
Q ss_pred HHHHHHHHhhccChh------hHHHHHHHHHHHHHHhCCCCcChH-HHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCC
Q 000146 168 FLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFGAKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240 (2052)
Q Consensus 168 v~e~Ll~~l~~K~PK------vv~~~l~~L~~~l~~FG~~~i~~k-~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~ 240 (2052)
|+..+.+.+..-+-+ +...++.++.+.+.+||.-..+.. .+++.+..-++.....||+.|+-++..+..+++.
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~ 207 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR 207 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH
Confidence 778887777665554 889999999999999999665654 3788888889999999999999999998888875
Q ss_pred chhhHH---HHhhC----hHHHHHHHHHHHHhcc---C----CCC----CC--ccchhhh--hHhh--------------
Q 000146 241 DPVKTI---LFEKM----RDTMKKELEVELVNVS---G----TAR----PT--RKIRAEQ--DKEL-------------- 284 (2052)
Q Consensus 241 ~~l~~~---L~~~L----kp~qlkeLe~~f~~~~---~----~~~----p~--R~~rs~~--~~~~-------------- 284 (2052)
++.... |.++| ++.+.+.+-+.+..+. | ... |. .|..+.+ +.+.
T Consensus 208 ~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 208 DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 433221 22333 2222332222222221 1 111 10 0110000 0000
Q ss_pred -hhcccc--------------cCCC-CCCCCCCCC---CCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHH
Q 000146 285 -GQELIS--------------EDVG-PGPSEESTA---DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAV 345 (2052)
Q Consensus 285 -~~~~~~--------------~~~~-~~~~~~~~~---~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL 345 (2052)
+.+..+ =.++ ..+++++++ .++++.|.+ ++-|+..++-.||.|++|+
T Consensus 288 cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~--------------~deYsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 288 CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQ--------------DDEYSDDEDMSWKVRRAAA 353 (1233)
T ss_pred ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchh--------------ccccccccchhHHHHHHHH
Confidence 000000 0000 000001100 001111110 2567778889999999999
Q ss_pred HHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh----------------hcc-----hhhh
Q 000146 346 AELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------THF-----SGSS 403 (2052)
Q Consensus 346 ~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~----------------~~f-----~~~~ 403 (2052)
+.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-.+-+..+ ..| ...+
T Consensus 354 Kcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~ 433 (1233)
T KOG1824|consen 354 KCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQV 433 (1233)
T ss_pred HHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhh
Confidence 9999977 56666667788999999999996666667777666665554322 112 2335
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhH
Q 000146 404 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~~ll~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
..++..|-+.+++++...+..+..-|..++... ..++..+++.|.-.+.+|+ .+.|..++.|+..++..+++..
T Consensus 434 ~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 434 PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 667777888888888767788888888887651 2456778888888898887 5999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh------hHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCC
Q 000146 478 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 551 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~------~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~ 551 (2052)
|.++++.+.|.+..++.|+.+.|-..|......+.+++... ...+++..+-....++++....
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~----------- 582 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS----------- 582 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-----------
Confidence 99999999999999999999999888888888888887532 1345555554444443322100
Q ss_pred CcccCCCCCCCCCCCCCcchhhhhhhccccC------C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCcC-CcCCCC
Q 000146 552 SARVQTSGGSVPSVEASESSFVRKSAASMLS------G-----KRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEA 619 (2052)
Q Consensus 552 ~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~------~-----~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~-s~~~~~ 619 (2052)
.-.|+..+-+-.+ | .-|.. -+. =-..-+.-..+..+ +..+..
T Consensus 583 ------------------DqeVkeraIscmgq~i~~fgD~l~~eL~~~-L~i-------l~eRl~nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 583 ------------------DQEVKERAISCMGQIIANFGDFLGNELPRT-LPI-------LLERLGNEITRLTAVKALTLI 636 (1233)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHH-------HHHHHhchhHHHHHHHHHHHH
Confidence 0001100000000 0 00000 000 00000000000000 000000
Q ss_pred CCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCC-CcccHHHH
Q 000146 620 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQV 698 (2052)
Q Consensus 620 ~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg-~~DsN~qV 698 (2052)
.. .+..++.. ....+++ +++..-|.-.+-+-|++.+..+.++++...... ..+.+-..|...|+ +.|+..+|
T Consensus 637 a~--S~l~i~l~---~~l~~il-~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhv 709 (1233)
T KOG1824|consen 637 AM--SPLDIDLS---PVLTEIL-PELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHV 709 (1233)
T ss_pred Hh--ccceeehh---hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHH
Confidence 00 00001100 0000000 233333444445556666555555555532211 12233333444444 68999999
Q ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHH---------
Q 000146 699 QQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIM--------- 765 (2052)
Q Consensus 699 ~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~----~~~~Vl~~L~~~l--------- 765 (2052)
.+.++.++..++...+...-.....+++.++.-+..+-+...|..++..+.++. .+++=+..++..+
T Consensus 710 t~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~ 789 (1233)
T KOG1824|consen 710 TQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVT 789 (1233)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccc
Confidence 999999999988875543334456667777766666655555555554444321 0110011111110
Q ss_pred ---------------------hhCC-----------------CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCC
Q 000146 766 ---------------------KDHK-----------------NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL 807 (2052)
Q Consensus 766 ---------------------~~~K-----------------npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL 807 (2052)
..+| +-.++.-++..+.++=..++. .....+-..+.+. +
T Consensus 790 ~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f 866 (1233)
T KOG1824|consen 790 DGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-F 866 (1233)
T ss_pred cchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-c
Confidence 0111 111222222222221111111 1223455556676 9
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccc----------cccccccCCCC
Q 000146 808 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT----------VRASESTSSVS 877 (2052)
Q Consensus 808 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~----------~r~~~~~~~~~ 877 (2052)
++++.+|+.||.-.+|.+..-.-+.+.+| ++.+|+.+ |.|+ ..+++
T Consensus 867 ~sp~edvksAAs~ALGsl~vgnl~~yLpf-------il~qi~sq-----------pk~QyLLLhSlkevi~~~s------ 922 (1233)
T KOG1824|consen 867 NSPSEDVKSAASYALGSLAVGNLPKYLPF-------ILEQIESQ-----------PKRQYLLLHSLKEVIVSAS------ 922 (1233)
T ss_pred CCChHHHHHHHHHHhhhhhcCchHhHHHH-------HHHHHhcc-----------hHhHHHHHHHHHHHHHHhc------
Confidence 99999999999999998875322333333 23333321 1110 00000
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~ 957 (2052)
.+-..|. ..+|..-|++.++...--.|.-..|+|++++.. . -..|.+.|+.++.....+.+..++..
T Consensus 923 --vd~~~~~---v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~-----e---pesLlpkL~~~~~S~a~~~rs~vvsa 989 (1233)
T KOG1824|consen 923 --VDGLKPY---VEKIWALLFKHCECAEEGTRNVVAECLGKLVLI-----E---PESLLPKLKLLLRSEASNTRSSVVSA 989 (1233)
T ss_pred --cchhhhh---HHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC-----C---hHHHHHHHHHHhcCCCcchhhhhhhe
Confidence 0001111 123555677778777777799999999998862 2 26799999999988888888888888
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA 1022 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~ 1022 (2052)
+.....--...++.+.+..+..++..+.|....||+.|..+++..+.+-+ +..++|.+.+.|.++
T Consensus 990 vKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred eeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 88888888889999999999999999999999999999999999988765 567888888888754
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.84 E-value=3.8e-20 Score=216.99 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=147.8
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcCcCHHHHHHHHHHHHHHHHHhh
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 396 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~--ki~~~dy~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 396 (2052)
.+. ..|.+...+.+|++|.+||+.|+.++... .....+|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46777778999999999999999988433 22222333333 356677889999999999999999999999
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 474 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~l-l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~- 474 (2052)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..+++||||++|.+++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 4324666 7888889999999999999999999999988
Q ss_pred -hhHHHH--hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHH
Q 000146 475 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535 (2052)
Q Consensus 475 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI 535 (2052)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..+|.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999988 4778899999888765
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.9e-15 Score=190.08 Aligned_cols=834 Identities=17% Similarity=0.183 Sum_probs=494.7
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFL 406 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~l 406 (2052)
+...+-+.+=..|++|=+.+..+...++ +...|..++. -.|+.|+..|+-.+..+..+.=+....- -..+
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4445667777789999999988765433 5677777777 7788999999988888887755555432 3456
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000146 407 LPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 484 (2052)
Q Consensus 407 lp~LL~kl-kdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 484 (2052)
...||..+ +|..+.||.+...++-.++++ ....-+++++-+..+.++.|++.|+.++..|..+....+. .+.+|++.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~ 159 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLDD 159 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH
Confidence 66666665 899999999999999999987 1114578888899999999999999999999988776553 45678899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC-ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCC
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVP 563 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G-e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~ 563 (2052)
+.+.+.+||+|....||-+|.++++++..... +....+.+..+-|.-..-+.+.+.-
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~---------------------- 217 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD---------------------- 217 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc----------------------
Confidence 99999999999999999999999999998875 3322222222222111111111000
Q ss_pred CCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcH
Q 000146 564 SVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPA 643 (2052)
Q Consensus 564 ~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~ 643 (2052)
.+++.
T Consensus 218 -----------------------------------------------------------------~d~~~---------- 222 (1075)
T KOG2171|consen 218 -----------------------------------------------------------------GDDDA---------- 222 (1075)
T ss_pred -----------------------------------------------------------------cchHH----------
Confidence 00000
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch---h
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK---K 719 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~---~ 719 (2052)
=..+++.|.+++...... .+..+.++.+....-+=++-+-.+.+.+|+++..+++..+...+ .
T Consensus 223 -------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 223 -------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred -------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 001122222222221111 01122222221111112455556888999999988887433221 1
Q ss_pred hHHHHHHHHHHh----hhch--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHH---hhCCCHHHHHHHH
Q 000146 720 CVVLCLLGISER----VADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGI 778 (2052)
Q Consensus 720 ~~~~il~~LveK----lgd~--------------K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l---~~~KnpKv~~e~L 778 (2052)
....+++.++.- ..|. -....|.++|..++-..++..|+..+++.+ ..+.+|+-|-++|
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 223333333322 2330 135678889999999999999888887764 5789999999999
Q ss_pred HHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhh-hhccHHHHHHHHHHHhcCC
Q 000146 779 LWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNP 856 (2052)
Q Consensus 779 ~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkP~ll~~Le~efeK~~ 856 (2052)
..|+.+.+..+-... .+..+++.+... |.|+.|.||.+|.+++|.|...+++.+..+. +.++|++...+
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-------- 440 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-------- 440 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh--------
Confidence 999999874332111 456788888885 9999999999999999999988888776544 33444444333
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhcc-ccCCCCChhh
Q 000146 857 FEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEAN-KRIQPAGTGE 934 (2052)
Q Consensus 857 ~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~-~~I~~~~~~e 934 (2052)
++. +-++-..|...+-...+++. ..|.|. +..
T Consensus 441 ---------------------------------------------d~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~ 474 (1075)
T KOG2171|consen 441 ---------------------------------------------DSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDG 474 (1075)
T ss_pred ---------------------------------------------cccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHH
Confidence 332 23444455555555555443 334444 477
Q ss_pred HHH-HHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCch
Q 000146 935 LFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 935 L~~-aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k----~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
|+. .|...+....+.|+..++..|+.+|.+.+..|.+|...++|.+.+.|...+ ..+|....+|++.+...+|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 887 444444666788999999999999999999999999999999998886443 568899999999999999977
Q ss_pred hhHHHHHHH---Hhc----C-ccChhHHHHHHHHHHHHhccCCC--CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTA---LTD----A-KLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~---L~~----~-k~np~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l 1078 (2052)
.+.|...+. +.. . ....-.|...+.+.++.-.-++. .+.+...++|+++.. .|.....
T Consensus 555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~----------- 623 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL----------- 623 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-----------
Confidence 776633222 211 0 00111344443333322222222 122334445555433 2222110
Q ss_pred HHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 000146 1079 LRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIM 1158 (2052)
Q Consensus 1079 ~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~ 1158 (2052)
++++..... ..++.-....+ +. + . .++ +-+.+. -
T Consensus 624 ---~d~~d~e~~-~~~~~~e~~~~-------~~---------~-------e---~~~-----------I~Tsvl-----~ 657 (1075)
T KOG2171|consen 624 ---SDEEDEEEE-QDLDGWEVVEL-------GD---------K-------E---NIG-----------IRTSVL-----D 657 (1075)
T ss_pred ---cCchhhhhc-cccccchhhcc-------CC---------c-------e---eee-----------eeehhH-----H
Confidence 022222211 11111000000 00 0 0 000 000000 0
Q ss_pred ccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhc-
Q 000146 1159 SVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL- 1237 (2052)
Q Consensus 1159 ~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l- 1237 (2052)
.+ +.....+--+ -...|-.|. .++++-...+ +....|.-.-..|..|++.|-..+
T Consensus 658 eK---~~A~~~Lv~~----------a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~ 713 (1075)
T KOG2171|consen 658 EK---ETACEALGEY----------AKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLT 713 (1075)
T ss_pred HH---HHHHHHHHHH----------HHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 00 0000000000 001122233 2222221111 223333333334555555554433
Q ss_pred ------CcChhhhHHHHHHHHHHHHHhh-cCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhh------
Q 000146 1238 ------PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS------ 1304 (2052)
Q Consensus 1238 ------~~~~~~~i~~lDlllk~l~lr~-~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~------ 1304 (2052)
...+..+...++-+++.+..-+ .+.-+.|+..+|+-+...+..+... .|.+.+...++-.+..++
T Consensus 714 ~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~--~L~~~~~~~~~~~~~~~~l~~~~~ 791 (1075)
T KOG2171|consen 714 CALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN--CLNEDGLEALLGGLLAQLLQHFKR 791 (1075)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc--cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655543 4568899999998888877776653 366666666665554333
Q ss_pred -CC---------ChHHHHHHHH----HHHHHHhh-------cCCc------cccHHHHHhhhcCCChhhHHHHHHHHHHH
Q 000146 1305 -GH---------NIEKVREKMR----ELTKQIVN-------FYSA------TKTLPYILEGLRSKNNRTRIECVDLVGFL 1357 (2052)
Q Consensus 1305 -Gd---------~k~~vr~~v~----~il~~~~~-------v~p~------skvf~~l~~gl~sKN~r~R~ecl~~l~~l 1357 (2052)
+| -.+..++.+. .++..++. .+-. ..++|++..-+.+++.--|+=.+..++.+
T Consensus 792 ~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ 871 (1075)
T KOG2171|consen 792 MQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDL 871 (1075)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22 1111222222 13333332 2221 25778877767666654488888889999
Q ss_pred HHhhCCCccccc--chHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHHH
Q 000146 1358 IDHHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1420 (2052)
Q Consensus 1358 i~~~G~~~~~~~--K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~~g~ls~~~~s~l 1420 (2052)
|+..|-.. -+. .-++.+...+.|.+++||++|-.-++.+-.+.|+.--..+..+.+..-.++
T Consensus 872 ie~~~~a~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~i 935 (1075)
T KOG2171|consen 872 IEGCGEAS-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVL 935 (1075)
T ss_pred HHhccccc-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 99888653 222 234999999999999999999999999999999883333333334333333
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.73 E-value=4e-17 Score=191.48 Aligned_cols=208 Identities=21% Similarity=0.323 Sum_probs=143.6
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh----hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 967 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~----~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~ 967 (2052)
.|...|.+...+.+|+.|.+|++.|+.++.+....-.+..| .++...+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34555666668899999999999999999853111111112 23334667788999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC
Q 000146 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1045 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l~~l-l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~ 1045 (2052)
.|++|+..++|.++++++|+++.||++|..||.+++++++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 77888888877 799999999999999999982
Q ss_pred -CC------chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000146 1046 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1102 (2052)
Q Consensus 1046 -~~------~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I 1102 (2052)
.. .+..+++.+.+++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124577779999999999999999999999999999876 556789998888765
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.2e-12 Score=157.74 Aligned_cols=703 Identities=18% Similarity=0.209 Sum_probs=425.4
Q ss_pred hHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-----hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh----
Q 000146 94 PLFKKTVADSNAPVQDKALDALIAYLKAADADAG-----RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---- 164 (2052)
Q Consensus 94 ~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-----~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~~---- 164 (2052)
+.+-.++.......+|-|+.||....+-....+. +...-++|.+++=.-...|++|..|+.|+-.|+-+..
T Consensus 131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~ 210 (885)
T KOG2023|consen 131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY 210 (885)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH
Confidence 3333444333336689999999887766543211 3344455655554222589999999999999886532
Q ss_pred --hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh-CC
Q 000146 165 --VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWI-GK 240 (2052)
Q Consensus 165 --~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l-G~ 240 (2052)
.+..++.+...-++-+|.|+...+..+.-+++-.-.+.+| +..|++++...-.+.|.+|-=+|.++-..+...- -+
T Consensus 211 ~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~ 290 (885)
T KOG2023|consen 211 VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICK 290 (885)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcH
Confidence 3566666655557788999999999998888665556665 7889999999999999999999999988877542 12
Q ss_pred chhhHHHHhhChHHHHHH-----HHHHH-Hhcc-CCCCC-------CccchhhhhHhhhhcccccCCCCCCCCCCCCCCC
Q 000146 241 DPVKTILFEKMRDTMKKE-----LEVEL-VNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVP 306 (2052)
Q Consensus 241 ~~l~~~L~~~Lkp~qlke-----Le~~f-~~~~-~~~~p-------~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2052)
.+++++| ++|-|+.+.- .+-.+ ++.+ ....| +|+-++... |.+... ++++
T Consensus 291 ~~L~p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~~---~~eD 354 (885)
T KOG2023|consen 291 EVLQPYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGEDA---DDED 354 (885)
T ss_pred HHHHHHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCcccc---cccc
Confidence 3456665 6777776652 11111 1111 11122 233333221 111110 0000
Q ss_pred CCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHH
Q 000146 307 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 386 (2052)
Q Consensus 307 ~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~ 386 (2052)
++.| ++.+.....+|.-|+-....|--+++. +...-+.-+++.|+..+...+=.|+..++-
T Consensus 355 dddD-----------------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 355 DDDD-----------------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224457899999877777666542 111224567788888888777788999999
Q ss_pred HHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 000146 387 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 466 (2052)
Q Consensus 387 ~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L 466 (2052)
++|.+|+|--..|-+|...++|.|+..+.|||+-||.-. |.+|.+.-..+.
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~------------------ 466 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV------------------ 466 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh------------------
Confidence 999999999999999999999999999999999888533 544444333221
Q ss_pred HHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCC
Q 000146 467 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDV 546 (2052)
Q Consensus 467 ~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~ 546 (2052)
+... ..+++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+-..-...+..|-
T Consensus 467 ----~~~~----~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ------- 530 (885)
T KOG2023|consen 467 ----QDSR----DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQ------- 530 (885)
T ss_pred ----cCCh----HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHh-------
Confidence 1111 1334666777888899999999999999999999888865 56676665433333322220
Q ss_pred CCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCC
Q 000146 547 ATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS 626 (2052)
Q Consensus 547 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~ 626 (2052)
T Consensus 531 -------------------------------------------------------------------------------- 530 (885)
T KOG2023|consen 531 -------------------------------------------------------------------------------- 530 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000146 627 EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 706 (2052)
Q Consensus 627 ~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l 706 (2052)
++|-..=.+|+.
T Consensus 531 ------------------------~KNLlILYDAIg-------------------------------------------- 542 (885)
T KOG2023|consen 531 ------------------------KKNLLILYDAIG-------------------------------------------- 542 (885)
T ss_pred ------------------------hcceehHHHHHH--------------------------------------------
Confidence 000001111111
Q ss_pred HHHHHHcCC-Cc-hhhHHHHHHHHHHhhhc----hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHH
Q 000146 707 NYLAATATK-FP-KKCVVLCLLGISERVAD----IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 707 ~~l~~~~~~-~~-~~~~~~il~~LveKlgd----~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~ 774 (2052)
.+++..+. +. +.++..++|.|++|-.- .|--=.-.+||..++.+.+-. .|+++.++.+
T Consensus 543 -tlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il--------- 612 (885)
T KOG2023|consen 543 -TLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRIL--------- 612 (885)
T ss_pred -HHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHH---------
Confidence 12221111 11 33567778888877432 132233445666666655432 2333333322
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..+++.+...-...... .+=|+++ -.+..++.-|..-+|..+.
T Consensus 613 ~~t~q~~~~~~~~~~~~-~pdkdfi----------------I~sLDL~SGLaegLg~~ie-------------------- 655 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVE-APDKDFI----------------IVSLDLLSGLAEGLGSHIE-------------------- 655 (885)
T ss_pred HHHHHHHHhccCCcccc-CCCcceE----------------EEeHHHHhHHHHHhhhchH--------------------
Confidence 11111111111000000 0001110 0011111111111111111
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
.++.+.+ |..-++..+.|.--.+|+.+.-.++.+...+..++.|+. .+
T Consensus 656 ---------------------------~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~ 703 (885)
T KOG2023|consen 656 ---------------------------PLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-AD 703 (885)
T ss_pred ---------------------------HHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HH
Confidence 1111112 344567778888889999999999999987778888886 88
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC-----
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH----- 1007 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k--~~VR~aa~~aL~~i~~~~~----- 1007 (2052)
++..|..-++-.|..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+-..-|++.+...++
T Consensus 704 fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 704 FLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 999998888888999999999999999999999999999999988887776433 3455555556666655443
Q ss_pred -chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhh--hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1008 -LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1008 -l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
++.++..-...|.+=. .-+.|..++.-+...+.-.+. ....+ ++--.+....+...++|..-.+.|-.+...+|.
T Consensus 784 ~l~~f~~pWc~sl~~i~-DneEK~sAFrG~c~mi~vNp~-~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~ 861 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNID-DNEEKESAFRGLCNMINVNPS-GVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGK 861 (885)
T ss_pred hHHHHHHHHHHHhcccc-cchhHHHHHHHHHHheeeCch-hhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Confidence 2222222222333211 123466666666654432222 11222 222244556677799999999999999999999
Q ss_pred hHHHHHhccCChHHHHHHHHH
Q 000146 1085 ETIEKNLKDIQGPALALILER 1105 (2052)
Q Consensus 1085 e~~~~~l~~L~~~~~~~I~~~ 1105 (2052)
..-..+...++|..+..+...
T Consensus 862 ~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 862 INWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred hhHHHHhhcCChhHHHHHHHH
Confidence 888888899999887766553
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.68 E-value=3.6e-10 Score=143.18 Aligned_cols=517 Identities=16% Similarity=0.221 Sum_probs=314.0
Q ss_pred HHHHHHHHHhcCcCHH------HHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000146 364 EVCRTLKKLITDVNIA------VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 437 (2052)
Q Consensus 364 ~l~~~L~k~l~D~N~~------V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~ 437 (2052)
.+++.+...+.+.++. +...+|..++.+-..+|.-+-+++..++..++-.+.-....||.-+..+|..+..+ |
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-C 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-c
Confidence 4555555555544444 66677777777777888777778888999999999999999999999999999887 4
Q ss_pred CC--HHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh---cCCChHHHHHHHHHHHH
Q 000146 438 LN--LVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 438 ~~--l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~~l~~ 510 (2052)
.. +..+++++..+|.+. +..+|.. ...|+.+... ....+..+++.++|.+.... +..+.+.|+...++++.
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 32 577888888888644 3344432 2233332222 22346677889999999988 88899999999999999
Q ss_pred HHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCC
Q 000146 511 IAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 590 (2052)
Q Consensus 511 l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~ 590 (2052)
|...... .+.++.+.+-..-.+. +.- .+ +- .+ ..+ +. . ..+
T Consensus 284 fl~rcp~-ei~p~~pei~~l~l~y----isY---DP--Ny----------~y-d~~--eD-----e-d~~---------- 324 (1233)
T KOG1824|consen 284 FLRRCPK-EILPHVPEIINLCLSY----ISY---DP--NY----------NY-DTE--ED-----E-DAM---------- 324 (1233)
T ss_pred HHHhChh-hhcccchHHHHHHHHH----hcc---CC--CC----------CC-CCc--cc-----h-hhh----------
Confidence 9988774 3677777654432222 211 00 00 00 000 00 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCC-CCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000146 591 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV-EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 669 (2052)
Q Consensus 591 ~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~-~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 669 (2052)
..+..+|. .+.++++|| +-.||.|-+|..-+...+.
T Consensus 325 -------------------------~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 325 -------------------------FLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred -------------------------hhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHh
Confidence 00000000 011223322 2246666666555554432
Q ss_pred hcccc-------------------c-----hHHHHHHHHHhcCCCC----------------------------------
Q 000146 670 AVQNL-------------------D-----QSVEILVRLVCMLPGW---------------------------------- 691 (2052)
Q Consensus 670 ~~~~~-------------------~-----~~~~~Lv~~L~~~pg~---------------------------------- 691 (2052)
+-.+. + ......+..|...+.|
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 21000 0 0012223333332222
Q ss_pred ---cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhChhHH---HHHH
Q 000146 692 ---SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGPGFI---FERL 761 (2052)
Q Consensus 692 ---~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~~~V---l~~L 761 (2052)
+++..+-.+..|..|..++..++.....+...++|+++-.+.|. ..+..+.-.|....-..+|+.. +..+
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~L 521 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSAL 521 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhh
Confidence 22222233456666666666666666667788889988888883 2333343344444434444321 1222
Q ss_pred H---HHHhhCCCHHHHHHHHHHHHHHHHHhCCC----CCC----hHhHHHHHHh-hCCCCCcHHHHHHHHHHHHHHHHhh
Q 000146 762 Y---KIMKDHKNPKVLSEGILWMVSAVEDFGVS----HLK----LKDLIDFCKD-TGLQSSAAATRNATIKLLGALHKFV 829 (2052)
Q Consensus 762 ~---~~l~~~KnpKv~~e~L~~L~~~i~~fG~~----~l~----~k~li~~l~~-~gL~~~n~~VR~aA~~ll~~Ly~~~ 829 (2052)
. -......=+|+-.|+|....++++-.-.. .++ ++.++....+ +-..+.+.+||..|+.|++.+-..+
T Consensus 522 s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f 601 (1233)
T KOG1824|consen 522 SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF 601 (1233)
T ss_pred hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 2 22245778999999999988888743221 233 4445444322 2246889999999999999999998
Q ss_pred ChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHH
Q 000146 830 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 909 (2052)
Q Consensus 830 G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R 909 (2052)
|+.+..++...-|.+.+.|..| -+|
T Consensus 602 gD~l~~eL~~~L~il~eRl~nE-------------------------------------------------------iTR 626 (1233)
T KOG1824|consen 602 GDFLGNELPRTLPILLERLGNE-------------------------------------------------------ITR 626 (1233)
T ss_pred hhhhhhhhHHHHHHHHHHHhch-------------------------------------------------------hHH
Confidence 8665555433333333222222 136
Q ss_pred HHHHHHHHHHHHhccccCC--CCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCC
Q 000146 910 LESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGD 986 (2052)
Q Consensus 910 ~eale~L~~ll~~a~~~I~--~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D 986 (2052)
..|+.++.-|... .-.|. +. ++++...|..-+.-.+..++..++..+..+.+..+..+..+ +..++-.+...+.+
T Consensus 627 l~AvkAlt~Ia~S-~l~i~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 627 LTAVKALTLIAMS-PLDIDLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred HHHHHHHHHHHhc-cceeehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 6666666666542 23332 22 46777777777777778888999999999999998888766 55577788888899
Q ss_pred CcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000146 987 NKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 1022 (2052)
Q Consensus 987 ~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~ 1022 (2052)
+...+-+-|..+|.+++..-+ ...+++.+...++++
T Consensus 705 sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 705 SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 999999999999999887643 345777777777754
No 10
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1e-13 Score=171.96 Aligned_cols=514 Identities=18% Similarity=0.178 Sum_probs=337.0
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCCc-ChHHHHhhhhhhhCC-CChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHH
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~i-~~k~il~~l~~ll~~-~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ 254 (2052)
.+..+.+....+.+...++.+.|.+.+ .++++.. .-++| .+.++|+.-..+...+.+|+.. .+.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~---~~l~~~~~~~~~~~~~v~~~~~a~~~~~--------~d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFE---QRLNSLHNDNLRNNVVVLEGTLAFHLQI--------VDPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHH---HHhccchhHHHhhhhHHHHHHHHHhccc--------cCcchh
Confidence 667778888888999999999999543 3444433 33332 3789999999998888888742 122322
Q ss_pred HHHHHHHHHHhccCCCCCCccchhhhhHhhhhc-ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhc
Q 000146 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 333 (2052)
Q Consensus 255 qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 333 (2052)
.-++..|+... +|.... | .+-.. -++-... .+..++..++ +...+.+
T Consensus 96 --~~~~~~~~~~~---tps~~~---q--~~~~~~l~~~~~~-----------------~~~~~~~~~l-----~~l~~ll 143 (569)
T KOG1242|consen 96 --SIIEILLEELD---TPSKSV---Q--RAVSTCLPPLVVL-----------------SKGLSGEYVL-----ELLLELL 143 (569)
T ss_pred --HHHHHHHHhcC---CCcHHH---H--HHHHHHhhhHHHH-----------------hhccCHHHHH-----HHHHHHh
Confidence 22444444432 222111 1 10000 0000000 0000111111 2456667
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHH-HHHHHHHHHHHhhhcchhhhhhHHHHHHH
Q 000146 334 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLE 412 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~ 412 (2052)
+..+..+|+.|...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......|++.|+||...++|.+|.
T Consensus 144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 88999999999999999987766665555678999999999998888885 77888888899999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 491 (2052)
+++|+-+.||+++..|.++++.. ....+..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999999985 22457889999988888779999999999999 67777888888999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcch
Q 000146 492 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571 (2052)
Q Consensus 492 ~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 571 (2052)
.|+|++++||++|.+|+-.++.++.+..+.++++.|- +++.- |+..++ .
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~~--------------e 351 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYTP--------------E 351 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccchH--------------H
Confidence 9999999999999999999999999988888777652 22210 000000 0
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000146 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 651 (2052)
Q Consensus 572 ~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 651 (2052)
.+ .+ .+. +.-...+.+ -..+++-+-+...+..
T Consensus 352 ~~-~~----L~~---------------------------------ttFV~~V~~----------psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 352 CL-DS----LGA---------------------------------TTFVAEVDA----------PSLALMVPILKRGLAE 383 (569)
T ss_pred HH-Hh----hcc---------------------------------eeeeeeecc----------hhHHHHHHHHHHHHhh
Confidence 00 00 000 000001111 1111222333334433
Q ss_pred CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 652 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
...-.+-.+...+ +-+..+++. +.-....+..++|++=..
T Consensus 384 Rst~~kr~t~~Ii---------------------------------------dNm~~LveD-p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 384 RSTSIKRKTAIII---------------------------------------DNMCKLVED-PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ccchhhhhHHHHH---------------------------------------HHHHHhhcC-HHHHhhhHHHHhhHHHHH
Confidence 2222221111111 111122211 111122445556665555
Q ss_pred hhc--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHH-HHHhh
Q 000146 732 VAD--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID-FCKDT 805 (2052)
Q Consensus 732 lgd--~K~r~~a~e~L~~l~E~~~~---~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~-~l~~~ 805 (2052)
+.| +-+|..+..+|..+.|..+. +.+.+.+...+..+|.-+-+.++...++.++...|...+ ..++. .+...
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~ 501 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANA 501 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHH
Confidence 555 45788888888888776553 456777777777788888899999999999988887632 22222 22222
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
.....++.+|..-+.++..+-...|..+..|+.++-+.+++.+.+..+..
T Consensus 502 ~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 502 SSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred hhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 13344566899988888888888888899999888888888877655443
No 11
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.59 E-value=3e-13 Score=161.27 Aligned_cols=387 Identities=16% Similarity=0.176 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHhhhch---hhhHHHHHHHHHHHhhhChhHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHHhCCCC-
Q 000146 720 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSH- 792 (2052)
Q Consensus 720 ~~~~il~~LveKlgd~---K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~---~~KnpKv~~e~L~~L~~~i~~fG~~~- 792 (2052)
|...-+..++.|-|-. .+++.....+.++..++.+.+... +++.+- ..-.||-|...+++++...++|...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444444555554442 245555566777788888777666 666653 34588989999999999998875432
Q ss_pred -CChHh----HHHHHHhhCCCC-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC-CCCCc-
Q 000146 793 -LKLKD----LIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 864 (2052)
Q Consensus 793 -l~~k~----li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~-~p~p~- 864 (2052)
.+.+. +..+.... +.- ....+-......++.++..+..+|...++.+.|......-+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm~~~~-~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKMFPWM-FDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhccccc-cCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 22221 11221111 111 11234445566777777777778999999999998888877776654321 11111
Q ss_pred -c--cc-cccccc-----C--CCC--------------C-C--------------CCCCCCcccc-cccccHHHHhhcCC
Q 000146 865 -K--TV-RASEST-----S--SVS--------------S-G--------------GSDGLPREDI-SGKFTPTLVKSLES 903 (2052)
Q Consensus 865 -r--~~-r~~~~~-----~--~~~--------------~-~--------------~~d~lpr~dI-s~~i~~~ll~~l~d 903 (2052)
+ +. +.+... + ... + + ..|.+.+..+ ...+..+++..+.+
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 000 0 0 0011222111 11233466677766
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000146 904 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 981 (2052)
Q Consensus 904 ~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll 981 (2052)
. .-.+|++|+.+|.+++.+....+|...|++|+..+...|.| .+......||++|+.+++.....|..+.+..+..+|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 5 78899999999999999877888988899999999999999 789999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHH
Q 000146 982 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1057 (2052)
Q Consensus 982 ~~l~D~k~-~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1057 (2052)
++-+|..+ ++|.|+..|+..+..+.|...+.. +...+.+. ....-.-+++++.+.++..... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999766 567777777888888887666544 34444332 1223466788999999887652 34566777799
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000146 1058 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1111 (2052)
Q Consensus 1058 ~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~ 1111 (2052)
++++..++.|||.|..||.+++..+|.+.|.+|+..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998753
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=2.6e-07 Score=131.07 Aligned_cols=770 Identities=14% Similarity=0.110 Sum_probs=446.3
Q ss_pred hhHHHHHhcc-CcHHHHHHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh--
Q 000146 93 GPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-- 165 (2052)
Q Consensus 93 ~~l~~k~v~D-sN~~aqe~gl~al~~~l~~~~~~~~~~~---~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~-- 165 (2052)
..++.++-+- ++...|+.++..|..|.+...+ ....+ .+.+|.|+.= |. +...+|..|..++..+...++.
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~e-nR~~Ia~~aGaIP~LV~l-L~sg~~~vk~nAaaaL~nLS~~e~nk~ 93 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREE-ARKAIGSHSQAMPLLVSL-LRSGTLGAKVNAAAVLGVLCKEEDLRV 93 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChH-HHHHHHHccCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 5666666544 4688899999999999877654 22222 2467777765 64 6788998888777776654321
Q ss_pred ----hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHh-----CCCCcChHHHHhhhhhhhCCCC---hhHHHHHHHHHHH
Q 000146 166 ----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTLE 233 (2052)
Q Consensus 166 ----~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~F-----G~~~i~~k~il~~l~~ll~~~d---k~VR~~a~~l~ve 233 (2052)
...++.|+..+++-++..+..|..+|..+.... +..++--.-.++.|..++.+.+ +.|++.+...+..
T Consensus 94 ~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 94 KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 244555666677767888888888887765322 1111111234566666666643 3344443333333
Q ss_pred HHHhhCCchhhHH-HHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 000146 234 LCRWIGKDPVKTI-LFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 312 (2052)
Q Consensus 234 ly~~lG~~~l~~~-L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~ 312 (2052)
|..+-+ + .... +-.+.-
T Consensus 174 Ls~~~e-n-~~~~IIeaGaV------------------------------------------------------------ 191 (2102)
T PLN03200 174 LCGSTD-G-FWSATLEAGGV------------------------------------------------------------ 191 (2102)
T ss_pred HhcCcc-c-hHHHHHHcCCH------------------------------------------------------------
Confidence 332221 0 0000 000000
Q ss_pred CCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCC-ChHHHHHHHHHHhc-CcCHHHHHHHHHHHH
Q 000146 313 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLIT-DVNIAVAVEAIQAIG 389 (2052)
Q Consensus 313 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~-dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~ 389 (2052)
+.+.+.+.+.+=..+.+|...|..++. .+..... --...++.|.+++. +.+..|+..|+.+|.
T Consensus 192 --------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~ 257 (2102)
T PLN03200 192 --------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE 257 (2102)
T ss_pred --------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence 123333444445556666666655542 2211000 00123677778886 677789999999999
Q ss_pred HHHHHhhhcchhh--hhhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcC-ChH
Q 000146 390 NLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPL 457 (2052)
Q Consensus 390 ~La~~L~~~f~~~--~~~llp~LL~klkd---------kK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~K-np~ 457 (2052)
.|+.+- .++..+ -...+|.|++.+.. .+...++.+.-||.+++.. ...+++.+...+.+. ...
T Consensus 258 nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 258 ALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchHH
Confidence 999741 222222 12347777777653 3455688888999988764 255677776655432 334
Q ss_pred HHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHhhcCCChH-HHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 458 VRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 458 vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~-VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
+-..++..+..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. .++|+..+...+..-|. .+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--ik 407 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--KK 407 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--hh
Confidence 3344555555554332211 111112 24678899999888776 4777777764 34455444333332211 11
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 613 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~ 613 (2052)
-+...+...+ ..++.......
T Consensus 408 ~LV~LL~~~~---------------------------~evQ~~Av~aL-------------------------------- 428 (2102)
T PLN03200 408 VLVGLITMAT---------------------------ADVQEELIRAL-------------------------------- 428 (2102)
T ss_pred hhhhhhccCC---------------------------HHHHHHHHHHH--------------------------------
Confidence 1112111000 00000000000
Q ss_pred CcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhc
Q 000146 614 SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM 687 (2052)
Q Consensus 614 s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~Lv~~L~~ 687 (2052)
+...+ -..+..........-+-++..|.+.+-..|..|+..+..+..+.+... .....|+++|.
T Consensus 429 ~~L~~---------~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~- 498 (2102)
T PLN03200 429 SSLCC---------GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE- 498 (2102)
T ss_pred HHHhC---------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-
Confidence 00000 011112222222233678899999898999999988877664422110 12345555553
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHhhh--chhhhHHHHHHHHHHHhhhChhHHHHHHHH
Q 000146 688 LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYK 763 (2052)
Q Consensus 688 ~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~ 763 (2052)
..+..+++.+.-++..+... ..-.+..+ .-++|.|++-+. +.+.+..|..+|..+...... .++..++.
T Consensus 499 -----s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv~ 571 (2102)
T PLN03200 499 -----TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLTA 571 (2102)
T ss_pred -----CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 34567888888777766542 11112233 246777777664 467889999999988775444 35566776
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh
Q 000146 764 IMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838 (2052)
Q Consensus 764 ~l~~~KnpKv~~e~L~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~ 838 (2052)
. ..+.+++++..++..+..++..-... +.....-++.+..+ +.+.+..++..|..++..++....+.
T Consensus 572 L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d~------ 643 (2102)
T PLN03200 572 L-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQDL------ 643 (2102)
T ss_pred H-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChHH------
Confidence 5 47888999998888887776521111 01112356667777 89999999999999888877532110
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHH
Q 000146 839 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 918 (2052)
Q Consensus 839 ~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ 918 (2052)
. +.... ....+-++..+.+.+.++|+++...|..
T Consensus 644 ------~---~avv~-------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 644 ------C---ESLAT-------------------------------------DEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred ------H---HHHHH-------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 00000 0012346777888889999999999998
Q ss_pred HHHhcccc-CCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHH
Q 000146 919 ILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 997 (2052)
Q Consensus 919 ll~~a~~~-I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~ 997 (2052)
+....+.. ...-.-...++.|.+.|++.+..++..|+..|..++..-...-+-.....+++++..+.+....+|+.|..
T Consensus 678 L~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~ 757 (2102)
T PLN03200 678 LSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAAR 757 (2102)
T ss_pred HHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence 88532110 00000134678899999999999999999999999976432222223456899999999999999999999
Q ss_pred HHHHHHHhcCchhhH----------HHHHHHHhcCccC-hhH--HHHHHHHHHHHhccCCC-CC------chhhhHHHHH
Q 000146 998 VLDAWLAAVHLDKMV----------PYVTTALTDAKLG-AEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPAS 1057 (2052)
Q Consensus 998 aL~~i~~~~~l~~ll----------~~l~~~L~~~k~n-p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl~ 1057 (2052)
+|..+..+.+.+..+ ..+...|...... ... =.+++.||++.=..... .+ +...-+.||+
T Consensus 758 AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~ 837 (2102)
T PLN03200 758 ALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLV 837 (2102)
T ss_pred HHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHH
Confidence 999999988866643 2355566533211 111 24455555542111111 12 2234577899
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1058 IAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1058 ~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
.||.+.+++|.+.|.+.|..+.+
T Consensus 838 ~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 838 RCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHcCChHHHHHHHHHHHHHhc
Confidence 99999999999999998877754
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.47 E-value=1.7e-09 Score=133.43 Aligned_cols=590 Identities=18% Similarity=0.200 Sum_probs=342.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcC
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 454 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~K 454 (2052)
|.....+...-.+|..|++.-|=. ..+..+=--+..+.+-||+-...|...++.+ ..++.+++-|.+.+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444445555556666665533311 1122222223445577888888888888876 78899999999888876
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC---ChhHHHhHhhccHH
Q 000146 455 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEKLDDV 530 (2052)
Q Consensus 455 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G---e~~~~~~l~~Ld~~ 530 (2052)
+|+-|..+......+..-.+-+ ..++++.++.++-++|.|.+..||--+.-+++++.+..+ -+.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999999888887765444433 347889999999999999999999999999999999876 23445544444221
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 531 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 606 (2052)
Q Consensus 531 k~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~ 606 (2052)
-+ +-+..++...|...+-.. ++-. +-..+. .+.--.
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTre---vmlil~---------------------- 642 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTRE---VMLILI---------------------- 642 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHH---HHHHHH----------------------
Confidence 11 222222222211100000 0000 000000 000000
Q ss_pred CCCCCcCCcCCCCCCCCCCCCCCHHHHH-------HHh-------hccCcHHHHHhhhcCCHHHHHHH----HHHHHHHH
Q 000146 607 GSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQV 668 (2052)
Q Consensus 607 ~~~~~~~s~~~~~~~~~~~~~~s~ee~e-------~~~-------~~ll~~~l~~~L~s~~Wk~Rl~a----le~L~~~v 668 (2052)
.|....+||.. .+. ..++..+++..++.+=|..|.++ +..+...-
T Consensus 643 -----------------rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 643 -----------------REFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred -----------------HhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH
Confidence 00000001110 000 12334567778888889999887 33333221
Q ss_pred HhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC--CchhhHHHHHHHHHHhhhchhhhHH-HHHHH
Q 000146 669 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAH-AMKCL 745 (2052)
Q Consensus 669 ~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~-a~e~L 745 (2052)
-+....-.+.+.+-|.+. .++|-+.|-.....+++..++.+++. +..+....++.+++-.+...-+-+. ....+
T Consensus 706 v~ia~KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred HHHHHHhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 111110012234444433 37888889888899999888888754 5555556666666655544222111 12334
Q ss_pred HHHHhhhCh------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHH----HhhCCCCCcHHHH
Q 000146 746 TTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC----KDTGLQSSAAATR 815 (2052)
Q Consensus 746 ~~l~E~~~~------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l----~~~gL~~~n~~VR 815 (2052)
..++..++. ..++..++..+ ++|+|+||+.++..++.+..-.... .-..++..+ -.. |+...|+|-
T Consensus 783 g~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~lGvvLyEy-lgeeypEvL 858 (1172)
T KOG0213|consen 783 GTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHLGVVLYEY-LGEEYPEVL 858 (1172)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHhhHHHHHh-cCcccHHHH
Confidence 444443332 23444555554 8999999999998877665322110 001122211 111 333333333
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccH
Q 000146 816 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 895 (2052)
Q Consensus 816 ~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~ 895 (2052)
-.-+..+..+|..+|-. |. .| |-.||.+.|+|
T Consensus 859 gsILgAikaI~nvigm~---------------------km---~p------------------------Pi~dllPrltP 890 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMT---------------------KM---TP------------------------PIKDLLPRLTP 890 (1172)
T ss_pred HHHHHHHHHHHHhcccc---------------------cc---CC------------------------ChhhhcccchH
Confidence 33333333333333311 00 01 11123333443
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-------
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA------- 968 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~------- 968 (2052)
.+.++--|+-...++.++.|+..+..++...-+--+.--|...|+--|+.++..|.+++|.|+++.|+.
T Consensus 891 ----ILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLl 966 (1172)
T KOG0213|consen 891 ----ILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLL 966 (1172)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHH
Confidence 345666777888899999888765444443333345555667777889999999999999999999974
Q ss_pred --h---HHhh-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHh
Q 000146 969 --V---EKSS-----------------KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALT 1020 (2052)
Q Consensus 969 --~---~~~~-----------------~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~ 1020 (2052)
+ +++. -.++|.+++-+.-...+|.+-...+|..+++.+| +-.+.|.|.++|-
T Consensus 967 nnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm 1046 (1172)
T KOG0213|consen 967 NNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM 1046 (1172)
T ss_pred hcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc
Confidence 0 0000 1356777777777777888888888888887776 2345667777776
Q ss_pred cCccChhHHHHHHHHHHHHhccCCCCC---chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1021 ~~k~np~~R~~~l~~L~~~l~~~~~~~---~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
+. ++.-|+.+...+....-+..... .+.+++.-+...+-|.++-|-.+-.+|+..+...+|...|.+++
T Consensus 1047 Dr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1047 DR--DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred cc--cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 54 45667777766665443333221 22345555777789999999999999999999999999999886
No 14
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.1e-10 Score=137.48 Aligned_cols=639 Identities=15% Similarity=0.170 Sum_probs=372.3
Q ss_pred ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH----hhhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000146 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 361 dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~ 435 (2052)
++.++.+.|..++.....+....|..++..+++. +..++ .+....++|.+|+-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3455666666666522222355666555555543 33333 367889999999999999999999999999988754
Q ss_pred cC----CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000146 436 GC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 436 ~~----~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 511 (2052)
.+ .+++.+++.+..--.+.+|.||...+..|..+++..+. .+.+++..++..+.+...|.+.+|--.|+|-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 11 34677788877666788999999999999998886654 46788999999999999999999988888877777
Q ss_pred HHH-hCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCC
Q 000146 512 AKS-VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 590 (2052)
Q Consensus 512 ~~~-~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~ 590 (2052)
+.. +....+.+|+++|-|.-..... |-+ .-..-- . ...+...++... ...+|.-.
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~-Ysd----~D~~LL-------------~-~~eeD~~vpDre----eDIkPRfh- 339 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMV-YSD----DDIILL-------------K-NNEEDESVPDRE----EDIKPRFH- 339 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCc-ccc----ccHHHh-------------c-CccccccCCchh----hhccchhh-
Confidence 644 2345577887777654332210 000 000000 0 000000000000 00111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCC---HHHHH----HHhhccCc--------HHHHHhhhcCCHH
Q 000146 591 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS---LEEIE----SRLGSLIP--------ADTVGQLKSAVWK 655 (2052)
Q Consensus 591 ~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s---~ee~e----~~~~~ll~--------~~l~~~L~s~~Wk 655 (2052)
|+...+.+..+ ...-.+..++-.....+ ..-+. ..++.+++ |-+.+.|.+.+|+
T Consensus 340 ---------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 340 ---------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred ---------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 01000000000 00000000000001111 11111 22334444 3445678899999
Q ss_pred HHHHHHHHHHHHHHh-ccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHhhh
Q 000146 656 ERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 656 ~Rl~ale~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~-~~~~~~~~~~il~~LveKlg 733 (2052)
.|.+|+-.|..+.++ ++-..+....|+.+|.. -+.|+-.-|....+=+|..+..-. ..-....+..++.+++.++-
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll 486 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL 486 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence 999999999988877 44433344455555532 244544444443333333222211 11133567788899999998
Q ss_pred ch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHhCCC--CC--ChHhHH
Q 000146 734 DI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVS--HL--KLKDLI 799 (2052)
Q Consensus 734 d~--K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~--~~KnpKv~~e~L~~L~~~i~~fG~~--~l--~~k~li 799 (2052)
|. |++++|..++..+-|..+.+ +++.+++.... ++||-.+.-.++..|+..+...=-+ .+ -+.+++
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi 566 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLI 566 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHH
Confidence 85 58999999999988877754 34555544432 4899999999998888877322111 11 123444
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHH---hcCCCCCCCCCccccccccccCCC
Q 000146 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY---EKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 800 ~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ef---eK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
+.-. . +.++++++-- -.+|+..+...+|..+.+|-..+-..-...|++-. .++.. +++
T Consensus 567 ~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~--~~~-------------- 627 (885)
T KOG2023|consen 567 EKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ--DPT-------------- 627 (885)
T ss_pred HHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC--Ccc--------------
Confidence 4333 3 7888887643 45677778888888887776544433344444222 22211 110
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATL 955 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al 955 (2052)
-..|.-|.. | -+++.+.++.++-...+.+-. -..|...|...+.|.-..|++.+.
T Consensus 628 -----~~~pdkdfi--I-----------------~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F 683 (885)
T KOG2023|consen 628 -----VEAPDKDFI--I-----------------VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF 683 (885)
T ss_pred -----ccCCCcceE--E-----------------EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence 011111111 1 123333333332222232210 145888899999999999999999
Q ss_pred HHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch------hhHHHHHHHHhcCccChhHH
Q 000146 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------KMVPYVTTALTDAKLGAEGR 1029 (2052)
Q Consensus 956 ~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~------~ll~~l~~~L~~~k~np~~R 1029 (2052)
..+|.+++++-....++...++|.+...+.-.+-.+..-|.-+++.++...|.+ .++..+...+..++ + -
T Consensus 684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~---~ 759 (885)
T KOG2023|consen 684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-T---P 759 (885)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-c---h
Confidence 999999999988889999999999998888888889999999999999988743 34445555555442 1 2
Q ss_pred HHHHHHHHHHhccCCC------CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1030 KDLFDWLSKQLTGLSG------FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~------~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
.++++-.+-.+...+- .+++..++.|-...| +=++.+-++.|...+-.++.+-+.
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 3444443333333221 245667777743333 112233466676666555554443
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.9e-11 Score=146.29 Aligned_cols=336 Identities=18% Similarity=0.177 Sum_probs=248.3
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH-----hhhhhhhHHHHH
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV-----ELEAVDVFLDVM 172 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~-----e~~~~~~v~e~L 172 (2052)
-+.-.-..+|+.-..||-.++-...... ..-+..+..++++ .+..-+..+...+--++ +......++..|
T Consensus 104 ~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l 179 (569)
T KOG1242|consen 104 ELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNL 179 (569)
T ss_pred hcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHH
Confidence 3444556778888888877765543322 2223334455576 45555544333322222 223456788889
Q ss_pred HHHhhccChhhHH-HHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 173 EKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 173 l~~l~~K~PKvv~-~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.++..+|++.... +++.+........|...-| +-++++.+..-|+|..+.||++|...+..+.+.+.+-.++..+
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll--- 256 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL--- 256 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh---
Confidence 8998888776544 5666666777777864433 6678888888899999999999998877777766432222111
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhh
Q 000146 251 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 330 (2052)
| + ..
T Consensus 257 --------------------------------------------------------------------------p-s-ll 260 (569)
T KOG1242|consen 257 --------------------------------------------------------------------------P-S-LL 260 (569)
T ss_pred --------------------------------------------------------------------------h-h-hH
Confidence 0 0 11
Q ss_pred hhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 331 EGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
..+.+.+|+.+..+++-|..++ ..|+.......++++.|.+++.|+++.|+..+..|+..++...+. +-+..++|.
T Consensus 261 ~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~ 337 (569)
T KOG1242|consen 261 GSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPT 337 (569)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHH
Confidence 1122238999999999999888 467666667889999999999999999999999999999988875 347788999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYV 486 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~--~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~ 486 (2052)
|++.+.|.+..+.++......+=|-+ ...+++-++|.+..++...+..+|..+...+..+..-+ ++..+.++++.++
T Consensus 338 Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Ll 417 (569)
T KOG1242|consen 338 LLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLL 417 (569)
T ss_pred HHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHh
Confidence 99999999977776555444433322 23568889999999999999999999999998887776 6778889999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
|.+.+.+.|+.|+||..|.++|+.+.+.+|++.+
T Consensus 418 p~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 418 PGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998654
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.38 E-value=1.1e-07 Score=118.12 Aligned_cols=557 Identities=14% Similarity=0.170 Sum_probs=320.7
Q ss_pred CHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 653 VWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 653 ~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
.|+.|-.|+.-.+++..-.+-. -+....|+..+.+ |++|-+..|.-..-..+..+++..+.+.-..++.++-.|-+-
T Consensus 525 SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~--gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 525 SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH--GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH--hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 5777777777777665443221 1234556666654 688888888777777788888887777666677776665544
Q ss_pred hhchhhhHHHHHHHHHHHhhhC-------h---hHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCC--CChH
Q 000146 732 VADIKTRAHAMKCLTTFSEAVG-------P---GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSH--LKLK 796 (2052)
Q Consensus 732 lgd~K~r~~a~e~L~~l~E~~~-------~---~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~--l~~k 796 (2052)
+...+-+ . |.+|..+.+ + .+.-.+++-.+ ++.+.-....-.|..+.++...-|... +-..
T Consensus 603 ir~hrgk--~---laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~d 677 (1172)
T KOG0213|consen 603 IRQHRGK--E---LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFD 677 (1172)
T ss_pred HHHccCh--H---HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhh
Confidence 3322211 1 222222211 1 11122222221 345555555566666666665555431 1001
Q ss_pred hHHHHHHhhCCCCCcHHHHHHHH---------HHHHHHHHhhChh--hHhhh---hhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 797 DLIDFCKDTGLQSSAAATRNATI---------KLLGALHKFVGPD--IKGFL---ADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 797 ~li~~l~~~gL~~~n~~VR~aA~---------~ll~~Ly~~~G~~--l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
.+-.|+... -.|..|. .+.+++...+|.+ +...+ .+.++...+....-.+++-
T Consensus 678 ilp~ff~~f-------w~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~------ 744 (1172)
T KOG0213|consen 678 ILPEFFFSF-------WGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIV------ 744 (1172)
T ss_pred hhHHHHhhh-------hhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHH------
Confidence 111222211 1222222 3556777778854 22222 3333333333222222221
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhh----cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS----LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 938 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~----l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~a 938 (2052)
..+++.||...+-.-++.. +....-.+ .-.+..+..+...-..+.+|.. ..++..
T Consensus 745 -------------------~~lg~~diderleE~lidgil~Afqeqtt~d-~vml~gfg~V~~~lg~r~kpyl-pqi~st 803 (1172)
T KOG0213|consen 745 -------------------GRLGAADIDERLEERLIDGILYAFQEQTTED-SVMLLGFGTVVNALGGRVKPYL-PQICST 803 (1172)
T ss_pred -------------------hccccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhHHHHHHHHhhccccch-HHHHHH
Confidence 1234444444433333332 22111111 1234455555554457778875 899999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-------hh
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-------DK 1010 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l-------~~ 1010 (2052)
...+|+..-.+|+++|+.+++.++..|..- -++.+..+--.+.+.|++..+.|-.....||.+|+...|+ ..
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 999999999999999999999999988643 2345566666778999999999999999999999998864 56
Q ss_pred hHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH-
Q 000146 1011 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET- 1086 (2052)
Q Consensus 1011 ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~- 1086 (2052)
++|.|.+.|+++ ...+...++..+.+.-..-+.. .++..++-.|+..|.--+.++|.+|...++.+.+.+|+..
T Consensus 884 llPrltPILknr--heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 884 LLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred hcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHH
Confidence 777888888864 2345566777666544433332 3555666668888888899999999999999999999854
Q ss_pred HHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccc-------c
Q 000146 1087 IEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIM-------S 1159 (2052)
Q Consensus 1087 ~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~-------~ 1159 (2052)
+.-.++.|+...+.. +.....+- +.......|-+.- .
T Consensus 962 LatLlnnLkvqeRq~------RvcTtvaI------------------------------aIVaE~c~pFtVLPalmneYr 1005 (1172)
T KOG0213|consen 962 LATLLNNLKVQERQN------RVCTTVAI------------------------------AIVAETCGPFTVLPALMNEYR 1005 (1172)
T ss_pred HHHHHhcchHHHHHh------chhhhhhh------------------------------hhhhhhcCchhhhHHHHhhcc
Confidence 455567776443321 11100000 0000000000000 0
Q ss_pred cchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHh----hhhHHHHHhhcCcCHHHHHHHHHHHHH
Q 000146 1160 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMK----YFREDLHRRLLSTDFKKQVDGLEMLQK 1235 (2052)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~----~~~~~l~~~lfs~D~k~~l~al~~L~~ 1235 (2052)
.+..-++.+. ++...+-|+- . .+|+. .+.+=|-+.|.+-|.-+|.-|...+..
T Consensus 1006 tPe~nVQnGV--------------Lkalsf~Fey--------i-gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1006 TPEANVQNGV--------------LKALSFMFEY--------I-GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred CchhHHHHhH--------------HHHHHHHHHH--------H-HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 0000111111 1122222321 1 12221 244556677778898888888877765
Q ss_pred hcCc---C--hhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHH
Q 000146 1236 ALPS---I--RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEK 1310 (2052)
Q Consensus 1236 ~l~~---~--~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~ 1310 (2052)
..=. . .+.+|. |+.++--.++|+.|.|.+.+.|.+..+=..|. ...++.|.+.-+=|+-..
T Consensus 1063 l~Lg~~g~g~eda~iH----LLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg----------~~~~~~Y~~QGLFHPark 1128 (1172)
T KOG0213|consen 1063 LALGVPGTGCEDALIH----LLNLIWPNILETSPHVIQAFDEAMEGLRVALG----------PQAMLKYCLQGLFHPARK 1128 (1172)
T ss_pred HhcCCCCcCcHHHHHH----HHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc----------hHHHHHHHHHhccCcHHH
Confidence 4211 1 133444 33343346799999999999998887655554 356788888888889889
Q ss_pred HHHHHHHHHHHHhhc
Q 000146 1311 VREKMRELTKQIVNF 1325 (2052)
Q Consensus 1311 vr~~v~~il~~~~~v 1325 (2052)
||+..+.++..+...
T Consensus 1129 VR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1129 VRKRYWTVYNSMYHG 1143 (1172)
T ss_pred HHHHHHHHHHhHhhc
Confidence 999999998766543
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=1.2e-06 Score=124.66 Aligned_cols=810 Identities=16% Similarity=0.139 Sum_probs=461.2
Q ss_pred hhhhhcccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcch
Q 000146 328 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 400 (2052)
Q Consensus 328 ~f~~~l~s~--kWkeR~eaL~~L~~L~~~~---ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 400 (2052)
.+.+++.+. +-++|+.|+.+|+.+++.. |..-.+....++.|...|...+..+...|+.++..|+.. .+...
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I- 95 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV- 95 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH-
Confidence 567777765 6789999999999988532 111012234567777777755677788888888888754 22221
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 469 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~-~~~-------l~~ll~~l~~~L~~Knp---~vR~~~l~~L~~~ 469 (2052)
-....+|+|++.+++.....++.+..+|..+..+. |.. -...++.|...+++.+. -++..++..|..+
T Consensus 96 -v~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 96 -LLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred -HHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 13578999999999999999999999999998641 111 13456777777776542 2444445566554
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCC
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 548 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~ 548 (2052)
.... .......+ .-.+|.++.+|.+.++.++..|..++..++...++ . +..|.+ . |+
T Consensus 175 s~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVIe---a-Ga---- 232 (2102)
T PLN03200 175 CGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVLD---A-GA---- 232 (2102)
T ss_pred hcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHHH---C-CC----
Confidence 4332 22111112 23889999999999999998887777655433221 0 111111 0 00
Q ss_pred CCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000146 549 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 628 (2052)
Q Consensus 549 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 628 (2052)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHhhccCcHHHHHhhhc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Q 000146 629 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 629 s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+.+++.|.+ .+-..|.+|.--|..+..... ...+.+++ ..++..|.
T Consensus 233 -------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 233 -------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred -------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 0223444433 334556666666654443210 11111111 01111111
Q ss_pred HHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Q 000146 708 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 787 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~ 787 (2052)
.++.. +. +.+ +. .-...-+++.|.-+|..+|.-. ..++..|...+-......+...++..+..++..
T Consensus 281 ~lL~s-p~--~e~----~~----~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEF----MQ----GEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhh----hc----cccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 000 00 0000113455555555555432 234444444432334555666777777777665
Q ss_pred hCCCC-----CChHhHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000146 788 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 861 (2052)
Q Consensus 788 fG~~~-----l~~k~li~~l~~~gL~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p 861 (2052)
+.... ++...+...+.++ +.+.++. |...+..++..+|.. |.+.+.|.+.
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~gN-------------~~l~~~L~~~---------- 403 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLYGN-------------AYLSRKLNHA---------- 403 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhcCC-------------hHHHHHHHhc----------
Confidence 54321 1222334455566 7777766 366666666555521 1112222110
Q ss_pred CCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000146 862 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941 (2052)
Q Consensus 862 ~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~ 941 (2052)
| ..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|..
T Consensus 404 --------------------d----------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 404 --------------------E----------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred --------------------c----------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0 0123455555556677888888887777432111110001235788888
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000146 942 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 1013 (2052)
Q Consensus 942 rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-----l--~~ll~ 1013 (2052)
.|...+..++..|+.+++.++..-...-... -...+|.+++.|...+..++..|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8888889999999999999975322211111 13478999999999999999999899988765321 1 23567
Q ss_pred HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000146 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1093 (2052)
Q Consensus 1014 ~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~ 1093 (2052)
.|...|.+. ++..+..++..|...+... ....+++++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 788888865 4778888877777654431 1345577777787778888888888887776655543322111 0
Q ss_pred CChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhcccc
Q 000146 1094 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1173 (2052)
Q Consensus 1094 L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (2052)
....-...+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111222222222110
Q ss_pred CCCchHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhh-hHHHHH-H
Q 000146 1174 KDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLD-I 1250 (2052)
Q Consensus 1174 ~~~~k~~R~-~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~-~i~~lD-l 1250 (2052)
.+..+. .-..+ +++...+.+..+.+- +...+ +-++.+|.+.++..+.++.-.|.....+.... .....+ =
T Consensus 622 ---s~~ikk~Aa~iL-snL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 622 ---KEETQEKAASVL-ADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred ---CHHHHHHHHHHH-HHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 000000 00000 122223444433321 11223 35788889999998888888877776544322 111111 1
Q ss_pred HHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccc
Q 000146 1251 LLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1330 (2052)
Q Consensus 1251 llk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~sk 1330 (2052)
.++-+..-+.+.+..+...+++.|..++..-.. -.+.-..-.||.|+.-+.+..+.+|+..-..+-++|.-+|...
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 233333335788999999999988876432111 0111123458999888888778889998899999999999776
Q ss_pred cH----------HHHHhhhcCCChhh--HHHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHHhcCCChHHHHH
Q 000146 1331 TL----------PYILEGLRSKNNRT--RIECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKA 1389 (2052)
Q Consensus 1331 vf----------~~l~~gl~sKN~r~--R~ecl~~l~~li~~-~G~~~~~~--------~K~l~~ia~~i~drd~~VR~A 1389 (2052)
+| .-|++-|++-|.+. -.|.|+.|+.+... +|..-.-| +-.|..+..++.+-++.|-..
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHH
Confidence 44 23455566666554 44689999988874 33332111 235677778889999999999
Q ss_pred HHHHHHHHHHHhChHHHHHhhc---CCHHHHHHHHHHHHhh
Q 000146 1390 ALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1427 (2052)
Q Consensus 1390 Al~~l~~~y~~~G~~v~~~~g~---ls~~~~s~leer~kr~ 1427 (2052)
|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=.+
T Consensus 851 ai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 851 AIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 999998 55666522 2232 2445567777777654
No 18
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.1e-08 Score=133.47 Aligned_cols=564 Identities=18% Similarity=0.195 Sum_probs=345.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 519 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~ 519 (2052)
..+...+...+.+-||..|+..+-||-.+++.+++ ....-.+++|..++...|.|.+.-+.+-|.+.++.++.+-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34445556677789999999999999999998762 23334568899999999999999999999999998887755432
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000146 520 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 599 (2052)
Q Consensus 520 ~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~ 599 (2052)
-..+.+.| ++...+|.. ....+. . ...-.+.++. |+.|
T Consensus 897 k~~LV~sL-------~~tl~~Gkr-------~~~~vs------------~--eTelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL-------VNTLTGGKR-------KAIKVS------------E--ETELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH-------HHHHhcccc-------ccceec------------c--chhcccCCcC-CCCC-------------
Confidence 12222222 111111110 000000 0 0000100100 0000
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCC-CHHHHHHHhhccCcHHHHHhhh-----cCCHHHHHHHHHHHHHHHHhc-c
Q 000146 600 KPSAKKDGSGKQETSKLTEAPEDVEPSEM-SLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-Q 672 (2052)
Q Consensus 600 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~-s~ee~e~~~~~ll~~~l~~~L~-----s~~Wk~Rl~ale~L~~~v~~~-~ 672 (2052)
. .+.+ +.-|+...++++-.|+++.++. +..|.-|.-|.-.+..+.+.. .
T Consensus 935 ------~------------------Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~ 990 (1702)
T KOG0915|consen 935 ------D------------------GGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE 990 (1702)
T ss_pred ------C------------------CCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence 0 1122 5689999999999999987654 367999999999999887663 3
Q ss_pred ccchHHH-HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch--hhhHHHHHHHHHHH
Q 000146 673 NLDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFS 749 (2052)
Q Consensus 673 ~~~~~~~-~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~ 749 (2052)
...+... .+-|..+. --|.+..|++.+-++|..++.........++..++..|+..+++. ++|+.+.-+|..+.
T Consensus 991 kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred hhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 3333322 22222221 258999999999999999998755667888999999999999996 79999988888877
Q ss_pred hhhChhH-------HHHHHHHHHhhCCCHHHHH---HHHHHHHHHHHHhCCC--CCC----hHhHHHHHHhhCCCCCcHH
Q 000146 750 EAVGPGF-------IFERLYKIMKDHKNPKVLS---EGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAA 813 (2052)
Q Consensus 750 E~~~~~~-------Vl~~L~~~l~~~KnpKv~~---e~L~~L~~~i~~fG~~--~l~----~k~li~~l~~~gL~~~n~~ 813 (2052)
..-+.+. ++..+++.+.+.|. -||. .++..|++++-..+-. +.. +..+++++..-|.-++-++
T Consensus 1068 ~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1068 QGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 7655443 34445555433232 2332 3445566655443321 112 2346677654466699999
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHH-hcCCCCCC------CCCccccccccccCCC-CCCCCCCCC
Q 000146 814 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY-EKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLP 885 (2052)
Q Consensus 814 VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ef-eK~~~~~~------p~p~r~~r~~~~~~~~-~~~~~d~lp 885 (2052)
||..++.++..|-++.|..+++|+.+|.|.++..+..-= ..+.+-.. .......|.+..+.+. -...++.++
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 999999999999999999999999999998876654210 00000000 0000011111111000 000112333
Q ss_pred cccc--cccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 000146 886 REDI--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 962 (2052)
Q Consensus 886 r~dI--s~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la 962 (2052)
-+|+ ..++.|.+.+.+... .--.|..+..-+--+.......++|.. |.++.+|...+.|-|..++..-...++.++
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 3343 355666666665443 444566666666555555567788876 999999999999999999999999999999
Q ss_pred HHhCh-hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcC-ccChhHHHHHHHHHHH
Q 000146 963 SAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDA-KLGAEGRKDLFDWLSK 1038 (2052)
Q Consensus 963 ~alg~-~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~--~l~~ll~~l~~~L~~~-k~np~~R~~~l~~L~~ 1038 (2052)
..-.+ .+.++++.++..++....+.+.........-.+...+.. ....++|.+.=+.... +-+..++.++|
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW----- 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVW----- 1380 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-----
Confidence 98877 678888888888887777766332222222111111111 2467888655444321 21223333332
Q ss_pred HhccCCCCC-----chhhhHHHH-HhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1039 QLTGLSGFP-----DAAHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1039 ~l~~~~~~~-----~~~~ll~pl-~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
.+..+... ....++.++ ...+++..+.+|+.+..++..+...
T Consensus 1381 -~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1381 -AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred -HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 22222221 123344443 3456888899999988888766533
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.22 E-value=2.3e-08 Score=121.85 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=139.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh---------h
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA---------V 969 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~---------~ 969 (2052)
-.+.++--|+-...+..++.|+..+...+.+..+--+.--|...|+..|+.++..|-+++|.|+.+.|+. +
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnL 774 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNL 774 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcc
Confidence 3456666777788888899888766555554434445556677778889999999999999999999974 0
Q ss_pred ---HHhh-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCc
Q 000146 970 ---EKSS-----------------KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAK 1023 (2052)
Q Consensus 970 ---~~~~-----------------~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k 1023 (2052)
+++. -.++|.++.-+.-...+|.+-...++..+.+.+| .-.+.|.+.++|.+.
T Consensus 775 kvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr- 853 (975)
T COG5181 775 KVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR- 853 (975)
T ss_pred hHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-
Confidence 0110 1356677777777777888888888888887776 234566777777765
Q ss_pred cChhHHHHHHHHHHHHhccCCCCCc---hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1024 LGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1024 ~np~~R~~~l~~L~~~l~~~~~~~~---~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
+|.-|+.+...+....-+++...+ ...++.-+...+-|.++.|-.+-.+++..|..++|...|.+++
T Consensus 854 -D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 854 -DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred -chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 577788888777766555544322 2345555777889999999999999999999999999999886
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=5.6e-07 Score=113.59 Aligned_cols=586 Identities=15% Similarity=0.157 Sum_probs=338.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcchh--hhhhHHHHHHH
Q 000146 339 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLE 412 (2052)
Q Consensus 339 keR~eaL~~L~~L~~--~~ki~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~ 412 (2052)
--|...|++|.-++. .|......|.+++-++..... +++..|+..|.+|+-.--.-.+..|.. ....++....+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 456778888877764 243333456666666665554 888888999988876554444556753 35568888899
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc--------------
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-------------- 473 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-------------- 473 (2052)
..--....|+.++..||..|+.-+...+ +.++..-+.++++.|..|..++.+|-..+.+.-
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988999999999999999987411222 335555567899999999999999988655431
Q ss_pred -Ch--hHHH-HhhhhHHHHHHHhhc-------CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 474 -SK--AAVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 474 -~~--~~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
++ ..|. ..++.++|.|.+.|. |-+=.+-.+|--||..+..++|+..+++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 11 1111 234567777777772 222346677777888888877765332211
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000146 543 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 622 (2052)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 622 (2052)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHhcCCCCcccHHHHHH
Q 000146 623 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSVEILVRLVCMLPGWSEKNVQVQQ 700 (2052)
Q Consensus 623 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~--~~~~~Lv~~L~~~pg~~DsN~qV~~ 700 (2052)
+=+.+.+.+.+|+.|..|+-.+..++.+.++.. ....-.+..+.. -..|++..|..
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~--lm~D~sl~Vkd 424 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN--LMSDPSLWVKD 424 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH--HhcCchhhhcc
Confidence 112235667799999999999998887743321 000000000000 02344444433
Q ss_pred HHHHHHHHHHHHcCC--CchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHH
Q 000146 701 QVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 778 (2052)
Q Consensus 701 ~~Le~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L 778 (2052)
..--.+..+++.++. .........++.+++-+-| .|+|...++
T Consensus 425 TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-----------------------------------ePrva~N~C 469 (859)
T KOG1241|consen 425 TAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-----------------------------------EPRVASNVC 469 (859)
T ss_pred hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-----------------------------------CchHHHHHH
Confidence 332233333322211 1111222233333333333 344443333
Q ss_pred HHHHHHH---HHhCCC----CC-C--hHhHHHHHHhh-CCCC-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHH
Q 000146 779 LWMVSAV---EDFGVS----HL-K--LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 846 (2052)
Q Consensus 779 ~~L~~~i---~~fG~~----~l-~--~k~li~~l~~~-gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~ 846 (2052)
-.+..+. .+-+.. .. + ...++.-+.+. -..+ ...+.|.+|...|++|-++...+......++-+.+++
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2222222 221111 12 1 22344433321 0112 3357888888888888888877766666666666666
Q ss_pred HHHHHHh--cCCCCCCCCCccc-ccccccc-----CCCC-CCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHH
Q 000146 847 ALDAEYE--KNPFEGTVVPKKT-VRASEST-----SSVS-SGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAV 916 (2052)
Q Consensus 847 ~Le~efe--K~~~~~~p~p~r~-~r~~~~~-----~~~~-~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L 916 (2052)
.|+.-++ .... ..|. ...=++. ++.- --+. ..-.+++.|-..|+..++.+ .--+-.+|+-++
T Consensus 550 kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV 621 (859)
T KOG1241|consen 550 KLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV 621 (859)
T ss_pred HHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 6665554 1110 0000 0000000 0000 0000 11133455666778878773 445677888888
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH--HHHH
Q 000146 917 NKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMRE 993 (2052)
Q Consensus 917 ~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~--~VR~ 993 (2052)
..+++..+++.... ...+.+.|..-| +-....|...|+.+++.|+.+|+.+|.+|...++..++++|....- .|.-
T Consensus 622 ~tl~~~Lg~~F~ky-m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP 700 (859)
T KOG1241|consen 622 STLAESLGKGFAKY-MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKP 700 (859)
T ss_pred HHHHHHHhHhHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccc
Confidence 88887533322222 134455555555 4456889999999999999999999999999999999999997654 4677
Q ss_pred HHHHHHHHHHHhcC--chhhHHHHHHHHhcCc---cC----------hhHHHHHHHHHHHHhccCCCC---CchhhhHHH
Q 000146 994 CTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LG----------AEGRKDLFDWLSKQLTGLSGF---PDAAHLLKP 1055 (2052)
Q Consensus 994 aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k---~n----------p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~p 1055 (2052)
+...+.+.|+-.+| .+..+..+...|+... .. -++|..+++.-.-.+...... ..+.+.+++
T Consensus 701 ~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~ 780 (859)
T KOG1241|consen 701 AILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPH 780 (859)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHH
Confidence 77888888888887 3455665555554211 01 137888777766666655532 223344455
Q ss_pred HHhh---c--CCCC-HHHHHHHHHHHHHHHHHcChhHHH
Q 000146 1056 ASIA---M--TDKS-SDVRKAAEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1056 l~~~---L--~D~~-~dVRkaA~~~L~~l~~~~G~e~~~ 1088 (2052)
++.- + ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 781 I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 781 IISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 4443 2 3333 566677778888899999976544
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.3e-05 Score=99.53 Aligned_cols=730 Identities=15% Similarity=0.143 Sum_probs=401.8
Q ss_pred HHHHH-HhhcCCChhHHHHHHHHHHHHHhh--hhhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHh
Q 000146 134 CDAIA-AKCLTGRPKTVEKAQAVFMLWVEL--EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILK 210 (2052)
Q Consensus 134 i~~Li-eK~L~~r~~tk~~A~~~~l~~~e~--~~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~ 210 (2052)
+.+|+ ...|.+|+..+.. ++.--|..+ +.-+.|=.-++..+..--|.....+-+++..+-. .-...-....+++
T Consensus 56 ~AGL~LKN~L~akd~~~k~--~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~-~ElP~n~wp~li~ 132 (859)
T KOG1241|consen 56 AAGLQLKNSLTAKDPERKQ--QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC-IELPQNQWPELIV 132 (859)
T ss_pred HHhHHHhhhhccCCHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH-hhCchhhCHHHHH
Confidence 34443 4456655544432 223333333 2234555566677776666666655555554332 1111112345677
Q ss_pred hhhhhhCCCCh-hHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHH-HHHHHHhccCCCCCCccchhhhhHhh--hh
Q 000146 211 MLPELFDHQDQ-NVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKE-LEVELVNVSGTARPTRKIRAEQDKEL--GQ 286 (2052)
Q Consensus 211 ~l~~ll~~~dk-~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlke-Le~~f~~~~~~~~p~R~~rs~~~~~~--~~ 286 (2052)
.|..-..+..+ +||+.+.+.++-++..+.++.+... -.+ |.+...-... .-|..-+|-...... ..
T Consensus 133 ~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~---------sN~iLtaIv~gmrk-~e~s~~vRLaa~~aL~nsL 202 (859)
T KOG1241|consen 133 TLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ---------SNDILTAIVQGMRK-EETSAAVRLAALNALYNSL 202 (859)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH---------HhHHHHHHHhhccc-cCCchhHHHHHHHHHHHHH
Confidence 77766666554 5999999999999988865422111 111 1111111100 011111121111000 00
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcC--CCCCCCChHH
Q 000146 287 ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTE 364 (2052)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~--~ki~~~dy~~ 364 (2052)
+-...+ - ..+. +.+++= .-..+.-.+.+=+.|.+|+..|.+|..- ..+.+-.-..
T Consensus 203 ef~~~n---F---------~~E~-------ern~iM----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 203 EFTKAN---F---------NNEM-------ERNYIM----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred HHHHHh---h---------ccHh-------hhceee----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 0000 011100 1122333567778899999999988742 1111111123
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHH-------Hhhhcchhh------------hhhHHHHHHHHhccCc-------
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS------------SRFLLPVLLEKLKEKK------- 418 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~------------~~~llp~LL~klkdkK------- 418 (2052)
++..-.+.++..|-.|...|+.....+|. ..+..++.+ +..++|.||+.+-...
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 55555566777888888888776664442 122222222 4488999999884321
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCC
Q 000146 419 PTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 496 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds 496 (2052)
=++..|+..||.-+... | .=++-+++-|.+.+++.+|.-|..+.-.+..++..-.+..+.++....+|.+...+.|+
T Consensus 340 Wnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred CcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 25788999999988774 2 11345555666677788999999999999998887666777788899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 497 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 497 ~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
.--||+.+.-+|+.+...+.+...+... -..++.-.+++..+. |..+... .-.. .+
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~De-Prva~N~---------------CWAf--~~ 474 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLNDE-PRVASNV---------------CWAF--IS 474 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhhhC-chHHHHH---------------HHHH--HH
Confidence 9999999999999999888754332211 112333333332111 0000000 0000 00
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
. ...-+- .++ +....+ +. +
T Consensus 475 L----aea~~e--------A~~---------------s~~qt~-----~~--t--------------------------- 493 (859)
T KOG1241|consen 475 L----AEAAYE--------AAV---------------SNGQTD-----PA--T--------------------------- 493 (859)
T ss_pred H----HHHHHH--------hcc---------------CCCCCC-----cc--c---------------------------
Confidence 0 000000 000 000000 00 0
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhcC---CCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh
Q 000146 657 RLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~---pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 733 (2052)
+..+.++.-|.+. +.-.++| ....++++|..+++.+++-....+..+.+.+.+||.
T Consensus 494 -------------------~~y~~ii~~Ll~~tdr~dgnqsN--LR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~ 552 (859)
T KOG1241|consen 494 -------------------PFYEAIIGSLLKVTDRADGNQSN--LRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLD 552 (859)
T ss_pred -------------------hhHHHHHHHHHhhccccccchhh--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 0011111211111 1123444 556788888888887543222233333344444433
Q ss_pred chhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhhCCCC-Cc
Q 000146 734 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SA 811 (2052)
Q Consensus 734 d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~-~n 811 (2052)
.. +. .+++.....+.--.++.-.+.+|..++..+|..... ...++..+... ++. .+
T Consensus 553 q~---------i~------------~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s 610 (859)
T KOG1241|consen 553 QT---------IS------------SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRS 610 (859)
T ss_pred HH---------HH------------HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HcCCcc
Confidence 21 11 111111111112223444566777788888874332 34566666666 777 55
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 891 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~ 891 (2052)
..|-+.|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~--------------------------------------- 651 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ--------------------------------------- 651 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch---------------------------------------
Confidence 67888999999999999999999998887777665553211
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhChhh
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~~~ 969 (2052)
++++-..++-.++++...-...|.|.. .+++..|.+.|+.. +.+|.-.-+.+.+.||-++|.+|
T Consensus 652 -------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F 717 (859)
T KOG1241|consen 652 -------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF 717 (859)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH
Confidence 223344555566666553334455543 78889999988664 47788888999999999999999
Q ss_pred HHhhhHHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHh----cCccChh
Q 000146 970 EKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALT----DAKLGAE 1027 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l---~D~--------k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~----~~k~np~ 1027 (2052)
++|+..+++.+-..- .|. -..+|.++.++-..++.-++ +..++|.|...+. ++..+..
T Consensus 718 ~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~ 797 (859)
T KOG1241|consen 718 EPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEA 797 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchH
Confidence 999999999887655 232 12478888888888877655 2344555555543 2221223
Q ss_pred HHHHHHHHHHHHhccCCCC---C-chhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1028 GRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1028 ~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+-..+++.+......++.. . ...+++.- |..+..-+....|+.|.-+...+.++
T Consensus 798 ~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 798 LHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4456666666655555532 1 12345555 44555555666777777666655544
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.4e-07 Score=115.20 Aligned_cols=379 Identities=17% Similarity=0.207 Sum_probs=262.9
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchH--HHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 642 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 642 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~--~~~Lv~~L~~~p-g~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
++.+.++|.||-+..|.+|.-++.+++++.-..+.. ..-++..+...- .=.+.|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999883222111 223344332110 0011221 12344344433333343333
Q ss_pred hhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCC
Q 000146 719 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 790 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~ 790 (2052)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ +..+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 47888999999999884 78999999999999976644 3455555543 33333343 334444455554432
Q ss_pred ---CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000146 791 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 867 (2052)
Q Consensus 791 ---~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~ 867 (2052)
..+++..+++.+..- +-..||.+|..-..-+-.|+..-+-.+-+|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257888999999987 888999999988877776665444333333322
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhhhcc
Q 000146 868 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 945 (2052)
Q Consensus 868 r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~--~~~eL~~aL~~rL~D 945 (2052)
+.+.++..++|..-.+|.-.=..+.+.+.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345677777777777765555555555431 11222 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000146 946 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 1015 (2052)
Q Consensus 946 sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~-~VR~aa~~aL~~i~~~~~---------l~~ll~~l 1015 (2052)
++.-++..|+.+|.++.+--|+++-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999998877 576666554434443332 34778888
Q ss_pred HHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000146 1016 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1016 ~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
...+.+. +.+.|.++++|+.....+.+.. .+..++...+++.|.|++.+|-..+-..+..+...-
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 8888876 4788999999999888877763 355677777999999999999999888887776443
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=4.7e-07 Score=110.78 Aligned_cols=406 Identities=14% Similarity=0.168 Sum_probs=282.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhH
Q 000146 756 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834 (2052)
Q Consensus 756 ~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 834 (2052)
.++++++.-.....+.-.|.+.|..+..+.-..|.+.. -++.+++-+..+ +++++..||..|-+.+-.+.+.....+.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 34555554333333333345888888888777777632 245566666664 9999999999998888777777666666
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 914 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale 914 (2052)
.|++.+-.++. |+ ..|.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------kl---------------------------------------------saDsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KL---------------------------------------------SADSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HH---------------------------------------------hcCCccccc-cHHH
Confidence 66544322221 11 111111111 1223
Q ss_pred HHHHHHHhcc-ccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHH
Q 000146 915 AVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 993 (2052)
Q Consensus 915 ~L~~ll~~a~-~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~ 993 (2052)
.+..++.+.. ..-..-.+.++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|+..+++++++.|+|+...||+
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 3333332210 000011258999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-------CchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCC
Q 000146 994 CTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 994 aa~~aL~~i~~~~-------~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~ 1064 (2052)
-+..+|..+...+ ..+.+++.+..-+.++ +|..+.-++.|+.+.+.-.+.. .....++..++.|+.|..
T Consensus 227 ~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 9999999888765 2456777777777765 6899999999999988765542 344566777889998877
Q ss_pred H-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 1065 S-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1143 (2052)
Q Consensus 1065 ~-dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1143 (2052)
. .++..|+..-..++..++.+....-
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~----------------------------------------------------- 331 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEE----------------------------------------------------- 331 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccc-----------------------------------------------------
Confidence 7 5888887655555555554221100
Q ss_pred cCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCH
Q 000146 1144 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDF 1223 (2052)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~ 1223 (2052)
.+-+ .-+| -+...+++..-
T Consensus 332 ---------------------id~~----------------------------~ii~------------vl~~~l~~~~~ 350 (675)
T KOG0212|consen 332 ---------------------IDYG----------------------------SIIE------------VLTKYLSDDRE 350 (675)
T ss_pred ---------------------cchH----------------------------HHHH------------HHHHHhhcchH
Confidence 0000 0011 13334455555
Q ss_pred HHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHh
Q 000146 1224 KKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEK 1303 (2052)
Q Consensus 1224 k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K 1303 (2052)
..|+.+++=+.-.....+.+++.+.|-+|-.+..-+.|+.-.|+.+.|+.+..+. .+.+.. --..|+-.|++.
T Consensus 351 ~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~---~s~~~~----~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 351 ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC---SSSNSP----NLRKFLLSLLEM 423 (675)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh---cCcccc----cHHHHHHHHHHH
Confidence 6788888888888888888888989999999988999999999999999999764 333321 126788888888
Q ss_pred hCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhh
Q 000146 1304 SGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1339 (2052)
Q Consensus 1304 ~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl 1339 (2052)
.-+-+--++.+--=|++++|...-+..||..+.+-+
T Consensus 424 f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 424 FKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred HhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 877666677777778999999999999998865433
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.01 E-value=3.7e-06 Score=103.20 Aligned_cols=643 Identities=16% Similarity=0.204 Sum_probs=355.3
Q ss_pred hccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-h
Q 000146 100 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-K 177 (2052)
Q Consensus 100 v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l-~ 177 (2052)
+-|....+.-.|-+++..++..+|-.+. + ..+. --+.+ .+-+|+-.-.+.-.++..-..+.++..|.... +
T Consensus 255 lided~~~r~~g~eii~nL~~~~Gl~~~--v-s~mr----pDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S 327 (975)
T COG5181 255 LIDEDLKRRCMGREIILNLVYRCGLGFS--V-SSMR----PDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS 327 (975)
T ss_pred ccCccHHHhcccHHHHHHHHHHhcccee--e-eecc----CCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence 4466666677777777777777654110 0 0000 00111 22233322222222221111233333332222 4
Q ss_pred ccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh---hHHH---Hhh
Q 000146 178 NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV---KTIL---FEK 250 (2052)
Q Consensus 178 ~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l---~~~L---~~~ 250 (2052)
.|.|+.+..|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+-.+++..||=-+ ...| .++
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 479999999999999999999998876 899999999999999999999999999999998886222 1111 122
Q ss_pred ChHHHHHHHHHHHHhccCCCCCC---c----cchhhhhHhhhhcccccCCCCCCCCCC------CCCCCCCCCCCCCCCc
Q 000146 251 MRDTMKKELEVELVNVSGTARPT---R----KIRAEQDKELGQELISEDVGPGPSEES------TADVPPEIDEYELVDP 317 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~---R----~~rs~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iD~~dl~~~ 317 (2052)
....--++|-..+..+ |-.-|- . ++|....- .-.+-.+ + ++.+-.. -=+..+.++|+-+.+.
T Consensus 408 ~~~hrgk~l~sfLkA~-g~iiplm~peYa~h~tre~m~i-v~ref~s--p-deemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 408 ASQHRGKELVSFLKAM-GFIIPLMSPEYACHDTREHMEI-VFREFKS--P-DEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHhcCCchHHHHHHHh-ccccccCChHhhhhhHHHHHHH-HHHHhCC--c-hhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 2222222333332222 111110 0 11111100 0000000 0 0000000 0001122344323221
Q ss_pred ccccCcCccchhhhhcccCChHHHHHHHHHHHH--------HhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHH
Q 000146 318 VDILTPLEKSGFWEGVKATKWSERKDAVAELTK--------LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 389 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~--------L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~ 389 (2052)
+ . +.|+ +..|.+|.++=..+.+ +++ . +.-..+++.+...++|.--..+..++.++.
T Consensus 483 v------~-pefF----~~fw~rr~A~dr~~~k~v~~ttvilAk--~---~g~~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 483 V------S-PEFF----SPFWRRRSAGDRRSYKQVVLTTVILAK--M---GGDPRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred h------c-HHhh----chHHHhhhcccccccceeehhHHHHHH--H---cCChHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 1 1 2333 5679888776211111 111 0 112335566666677776666777777777
Q ss_pred HHHHHhh-hcc-hhhhhhHHHHHHHHhccCcHHHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHH
Q 000146 390 NLARGLR-THF-SGSSRFLLPVLLEKLKEKKPTVA------ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSL 461 (2052)
Q Consensus 390 ~La~~L~-~~f-~~~~~~llp~LL~klkdkK~~V~------~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~ 461 (2052)
.+...++ .+| ++....++-.++..|.+....+. .++..+++..+ -..+..++..++..|+||.|.+|+.
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~ 623 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIR 623 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHH
Confidence 7777665 346 35667778888888877654321 11122222222 2567899999999999999999999
Q ss_pred HHHHHHHH---HHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHH
Q 000146 462 TLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 538 (2052)
Q Consensus 462 ~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~ 538 (2052)
++..+..+ +..|..... +..+--+|...|+.-+|+|-..-..|+-.|..+.|.+.+.|-+.
T Consensus 624 aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~------------- 687 (975)
T COG5181 624 AADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS------------- 687 (975)
T ss_pred HHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh-------------
Confidence 88776654 344443322 23344556677777777775555555555555444321100000
Q ss_pred HhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCC
Q 000146 539 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 618 (2052)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~ 618 (2052)
T Consensus 688 -------------------------------------------------------------------------------- 687 (975)
T COG5181 688 -------------------------------------------------------------------------------- 687 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHH
Q 000146 619 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQV 698 (2052)
Q Consensus 619 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV 698 (2052)
+++ +.+...|. .++-+|
T Consensus 688 --------------------~il-P~ltPILr------------------------------------------nkh~Kv 704 (975)
T COG5181 688 --------------------GIL-PSLTPILR------------------------------------------NKHQKV 704 (975)
T ss_pred --------------------hcc-ccccHhhh------------------------------------------hhhHHH
Confidence 000 00111111 122233
Q ss_pred HHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHHhhhc-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHH
Q 000146 699 QQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 699 ~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgd-~K-~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~ 774 (2052)
....+.++..+..+.+.. + +.|+.. .=.|++-|.. .| +|-.|.+++.-+++++||+-|+..|+..+. ...-..|
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRI-cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~R 782 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRI-CFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQR 782 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHH-HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHhh
Confidence 333344444444443332 2 223333 3345665544 23 688999999999999999999999998872 2122222
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..+--.++-+-+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|..-++|.-.
T Consensus 783 vctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~--------------- 841 (975)
T COG5181 783 VCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS--------------- 841 (975)
T ss_pred hhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22223333333344442 344445443 677899999999999999999999776555422
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
|+|-+.+.+.|.+---|.-|+.-+..+.-++ +
T Consensus 842 --------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc-----~----- 873 (975)
T COG5181 842 --------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC-----P----- 873 (975)
T ss_pred --------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCC-----C-----
Confidence 4445555566666667888877776665321 1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
|..-+...-.++-.+.-++-|..++|.++..++++.+...+|...++.+
T Consensus 874 -------------------------------gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Y 922 (975)
T COG5181 874 -------------------------------GTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKY 922 (975)
T ss_pred -------------------------------CcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 1111122233344444455688999999999999999999999999999
Q ss_pred HHHHHhcCccChhHHHHHHHHH
Q 000146 1015 VTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 1015 l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
+...|=++ +..+|..-|.-.
T Consensus 923 v~qGLFHP--s~~VRk~ywtvy 942 (975)
T COG5181 923 VQQGLFHP--SSTVRKRYWTVY 942 (975)
T ss_pred HHHhccCc--hHHHHHHHHHHH
Confidence 99999887 356777655443
No 25
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.94 E-value=4.4e-08 Score=117.97 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=169.3
Q ss_pred cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~--ki~~~dy~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
+..-.+|++|+.+|..+.... .+....|.+|.-.+..++.| .+......|+..|+.|++.-...|..+....+--+|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 458899999999999876322 22335688999999999998 788899999999999999999999999999999999
Q ss_pred HHhccCcH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHH
Q 000146 412 EKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 490 (2052)
Q Consensus 412 ~klkdkK~-~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 490 (2052)
+..+|..+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...+++|+|.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999876 4566666666666655 333 3333343333333344455778899999999998889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 491 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 491 k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
++.+.+...||++|.-||.++...+|++.|.|++.+|...+++.|.=|+.++
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988899999999999999999998864
No 26
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=7.7e-06 Score=108.18 Aligned_cols=562 Identities=17% Similarity=0.133 Sum_probs=323.1
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 412 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 412 (2052)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+..|...+..-++.+....+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 3344556666666666554421111111 456778888887 7777766666555555444322 13467777888777
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh---hcCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV---KNKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L---~~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
..-+....||+++.+++..+... .+=....+.+...+ ...-| +.|.-++..+..+....+...+ -.++.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 77888889999999999999875 33223333333222 22222 4455566666666555443222 2567788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 000146 489 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 568 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 568 (2052)
......|..+.||.++..-++.+.+.++..... ..+.+..
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~------------------------------------- 281 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTL------------------------------------- 281 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHH-------------------------------------
Confidence 889999999999999999999998888752110 0000000
Q ss_pred cchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000146 569 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 648 (2052)
Q Consensus 569 ~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 648 (2052)
+..
T Consensus 282 -----------------------------------------------------------------------------~~L 284 (759)
T KOG0211|consen 282 -----------------------------------------------------------------------------IQL 284 (759)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000146 649 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 728 (2052)
Q Consensus 649 L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 728 (2052)
..+..=..|+.|++.+..+..-....+.....+...+.. -..|.+..|.-..-+....+....+. .. .-....+..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~~-~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-SA-TRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-cc-CcccchhhH
Confidence 001111234555555544444322211111111111110 02344444443333333333333222 00 111223444
Q ss_pred HHhhhchh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000146 729 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799 (2052)
Q Consensus 729 veKlgd~K--~r~~a~e~L~~l~E~~~----~~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li 799 (2052)
..-++|.. .|..+..-...+++..+ ++...+.+++.+ ..+.|+.|+......+......+|... .+..+.
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-CccccC
Confidence 44555543 23333333444444444 333333333322 356677777666666555555555321 234455
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCC
Q 000146 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 879 (2052)
Q Consensus 800 ~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~ 879 (2052)
+..... +.+-.+.||..-+..+.. .+.+... -
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~---------------------------~~~v~~v------~-------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSL---------------------------LEEVNDV------I-------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHH---------------------------HHhccCc------c--------------
Confidence 555544 666666666655432211 1111100 0
Q ss_pred CCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHH
Q 000146 880 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 959 (2052)
Q Consensus 880 ~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~ 959 (2052)
|.+. ++..+.+.+...-.|.+|++|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|...+.
T Consensus 472 g~~~-----~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GIST-----VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cchh-----hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 0000 01112234455556779999999999998888643211111 223444556677877889999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCccChhHHHHHHHH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~k~np~~R~~~l~~ 1035 (2052)
.++...|..+ +...++|.++...++..-.+|.+...++..++..+|- ..++|.+.....+. .|.+|-.++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999554 4577899999999998888999999999999999984 45666666666665 58999999999
Q ss_pred HHHHhccCCCCCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChhH
Q 000146 1036 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1086 (2052)
Q Consensus 1036 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~e~ 1086 (2052)
|...+..... +.....+.|+..+| .|.+.|||-.|..++..+..+.-+..
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 9987765543 23456677766655 89999999999999998877665533
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=0.00019 Score=97.17 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred hHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCC---CCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh
Q 000146 167 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 243 (2052)
Q Consensus 167 ~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~---~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l 243 (2052)
.+.+.|..+..+-||..+.+.+-||...++..|. .+...+.|...+..++++.|.=+.+.|..-+.-+|.--+ ..+
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd-~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD-SSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC-chh
Confidence 3344556677888999999999999999999995 345678899999999999998888888777777776543 323
Q ss_pred hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 244 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 244 ~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
+..| .+.|-+.|-. |. |+.-.-..+.+--. .|.-+. + .....+.
T Consensus 897 k~~L--------V~sL~~tl~~--Gk-------r~~~~vs~eTelFq--~G~Lg~---T-p~Gg~is------------- 940 (1702)
T KOG0915|consen 897 KKSL--------VDSLVNTLTG--GK-------RKAIKVSEETELFQ--EGTLGK---T-PDGGKIS------------- 940 (1702)
T ss_pred HHHH--------HHHHHHHHhc--cc-------cccceeccchhccc--CCcCCC---C-CCCCcch-------------
Confidence 3322 2222222111 21 11000000000000 000000 0 0001111
Q ss_pred CccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 324 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
. -++|..|++. +. -.+++=.+...-+ .+-=+-...|+--++.+++.-+...+||
T Consensus 941 ----T----------------YKELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~ 995 (1702)
T KOG0915|consen 941 ----T----------------YKELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPY 995 (1702)
T ss_pred ----H----------------HHHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhH
Confidence 1 2445555531 00 1122222222222 2211225667777777888778889999
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.+.++|-|...=-|..+.|+.+....-++++... .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+...+
T Consensus 996 l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 996 LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 9999999999999999999988777777766430 123678999999999999999999999999999999888888
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+.++++-..+...++|-+..||++|-.+...+.++.
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988876666553
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=0.00044 Score=92.51 Aligned_cols=657 Identities=14% Similarity=0.163 Sum_probs=360.1
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhc-ch-hhhhhHHHHHHHHhccCcHHHHHHHHHH
Q 000146 354 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 428 (2052)
Q Consensus 354 ~~k-i~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkK~~V~~aa~~a 428 (2052)
.|+ +....++++...|..++. .+|-.|...++.|++.+-..-+.. +. +-....+-+++.-.-+++|-||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 455 444568888888888888 889999999999999887654321 22 3356677788888889999999999999
Q ss_pred HHHHHHhcCCCHHHH-------HHHHHHHhhcC-ChHHHHHH---HHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCC
Q 000146 429 LQAMHKAGCLNLVDV-------VEDVKTSVKNK-VPLVRSLT---LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 497 (2052)
Q Consensus 429 L~ai~~~~~~~l~~l-------l~~l~~~L~~K-np~vR~~~---l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~ 497 (2052)
+.+++.++|..++.. ....+..+..+ ++..-..+ |..|...+-+|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 999998643322111 11111222211 23333333 344444455555544 4889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhh
Q 000146 498 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 577 (2052)
Q Consensus 498 ~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 577 (2052)
..|+-.+++|+..+.+.-.. .|+...-.++-.++-..+ |+ ...+-. ...=++.-.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps---------~~D~~~-t~~W~~v~~ 292 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PS---------ENDDLL-TVAWLKVLN 292 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CC---------ccchHH-HHHHHHHHH
Confidence 99999999999887765443 222222222222221110 00 000000 000000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHH
Q 000146 578 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 657 (2052)
Q Consensus 578 ~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 657 (2052)
.+. ... ..+..|-+...+..++ .-+.+ +..+.-+++
T Consensus 293 ~~~---------------------------------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 293 EAH---------------------------------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred HHH---------------------------------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 000 000 0011122222222223 23445 556666777
Q ss_pred HHHHHHHHHHHHhcc-c-cchHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh-
Q 000146 658 LEAISSLRQQVEAVQ-N-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA- 733 (2052)
Q Consensus 658 l~ale~L~~~v~~~~-~-~~~~~~~-Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg- 733 (2052)
+++.......+-... . .+..|.. +-.++.. .-..|...+|+++..+++.|+......+-.+|-.|.+.=+
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 776655443332221 1 1122333 2222211 1234677888888888888887777777777777766433
Q ss_pred -chhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC-C--ChHhHHHHHHhh----
Q 000146 734 -DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-L--KLKDLIDFCKDT---- 805 (2052)
Q Consensus 734 -d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~-l--~~k~li~~l~~~---- 805 (2052)
|.-.+....+|+.+...+.||+.|+..+==.+ ++......=.||--+++++-... + -...+++....+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 33356677888999999999988776542221 22222233357777777653321 1 112222222211
Q ss_pred -CCCCCcH---HHHHHHHHHHHHHHHhhC--hhhHhhh--------------hhccHHHHHHHHHHHhcCCC--------
Q 000146 806 -GLQSSAA---ATRNATIKLLGALHKFVG--PDIKGFL--------------ADVKPALLSALDAEYEKNPF-------- 857 (2052)
Q Consensus 806 -gL~~~n~---~VR~aA~~ll~~Ly~~~G--~~l~~~L--------------~~lkP~ll~~Le~efeK~~~-------- 857 (2052)
++....- .+++..-++..-|-.+.- -++..-| .++.+.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~ 558 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENK 558 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 0111111 122222222211111110 1111111 23334444444443433310
Q ss_pred ------------------CCCCCCcccc-----------c------ccccc-----CCC---CCCCCCC-----------
Q 000146 858 ------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG----------- 883 (2052)
Q Consensus 858 ------------------~~~p~p~r~~-----------r------~~~~~-----~~~---~~~~~d~----------- 883 (2052)
..+++..|.. | ...+. .+. .++.++.
T Consensus 559 e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLd 638 (1176)
T KOG1248|consen 559 EVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLD 638 (1176)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHH
Confidence 0011111100 0 00000 000 0000000
Q ss_pred --------CCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhhhccchHHHHHH
Q 000146 884 --------LPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMA 953 (2052)
Q Consensus 884 --------lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~ 953 (2052)
.+...++... .+......+ +-++++.+.+-|.+++... ..........++++.|..-+.++-.-.+..
T Consensus 639 l~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~ 716 (1176)
T KOG1248|consen 639 LLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQAS 716 (1176)
T ss_pred HHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 0000111100 122223333 6778888888888888630 011112234678889999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHhc
Q 000146 954 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALTD 1021 (2052)
Q Consensus 954 Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~--~~~---~-------l~~ll~~l~~~L~~ 1021 (2052)
.|.|+..|...++..+..++...+|-++-.+++-+..-|+.+.+||-.+. ... | +.++++.|...+..
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g 796 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG 796 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999998888889999999999999999988 321 3 34455566666554
Q ss_pred CccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1022 AKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1022 ~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+. ...+..-+-.+...+.+... ...+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|-+.
T Consensus 797 d~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 797 DS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred cH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 32 33444424444444444333 2334567777888999999999999999999999999998888887555444
No 29
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=5.5e-08 Score=112.25 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=159.7
Q ss_pred hhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
.+..+++++|....++|..++.|+ -++......+..++-.+.+-++..|+.|...||.|++.|+..+...+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987 4677777788888889999999999999999999999999999999888999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~ 486 (2052)
..|+.+-.+.|..||+.+..||.++..+ .+...+++.|..+++|.||.+|.-++..+.+|+.... ......+...++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 7889999999999999999999988877777776653 122234567788
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+.+..-+.|.-+++|++|.-.+.....+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHH
Confidence 9999999999999999998766544433
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=1.5e-06 Score=121.14 Aligned_cols=270 Identities=18% Similarity=0.128 Sum_probs=160.1
Q ss_pred HHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000146 726 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 803 (2052)
Q Consensus 726 ~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~ 803 (2052)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ +++++.||..++..|..+.+.... . +.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~----~----~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP----A----PALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc----h----HHHH
Confidence 445555555 467877776666543 334566666654 788888888888887666432211 1 2233
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCC
Q 000146 804 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 883 (2052)
Q Consensus 804 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~ 883 (2052)
.. |+++++.||.+|+..|+.+...--..+...|.+-.|.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 44 7788888999888888776411000111112222221111111111110
Q ss_pred CCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 000146 884 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 963 (2052)
Q Consensus 884 lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~ 963 (2052)
.. .+.++..+.|.++.+|..+.+.|..+-... ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -DD-------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -cC-------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 00 123556677888888888888776653210 223556667778888888888887776552
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccC
Q 000146 964 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 964 alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~ 1043 (2052)
.. ..+.+.++..|.|....||.+|..+|..+ +...-++.|...|.++ ++.+|.+++..|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 22335577778888888888877777643 3345567777777766 577888887777652
Q ss_pred CCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000146 1044 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1044 ~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
. ........|...++|.+++||.+|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667778888888888887774
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.72 E-value=8.8e-05 Score=98.51 Aligned_cols=491 Identities=18% Similarity=0.191 Sum_probs=285.0
Q ss_pred hhcccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 331 EGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 331 ~~l~s~--kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
+.+++. +-.+|++++..|..+. .+. +...++..+.+.+...+..+...+--.+..+.. .=...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~~ 81 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILII 81 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHHH
Confidence 334444 6778899999887754 232 333455566666776676655555444444332 1122577789
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~ 486 (2052)
..+.+-+.++++.++..|..++-.+... .-.+.+++.|...+.|++|.||..++..+.+++...+.. ++. ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 9999999999999999888888887642 335677888888999999999999999999998874332 233 79
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCC---hhHHHhHhhc-------cHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKL-------DDVRRNKLSEMIAGSGGDVATGTSSARVQ 556 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge---~~~~~~l~~L-------d~~k~kkI~e~~~~~~~~~~~~~~~~~~~ 556 (2052)
+.+.+++.|.++.|+.+|..++..+ +.-+. ..+..++..| ++--+-++-..+....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------- 220 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------- 220 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-------------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999888 11111 1111221111 1111112222111100
Q ss_pred CCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000146 557 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 636 (2052)
Q Consensus 557 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 636 (2052)
....++...
T Consensus 221 ----------------------------------------------------------------------~~~~~~~~~- 229 (526)
T PF01602_consen 221 ----------------------------------------------------------------------PMEPEDADK- 229 (526)
T ss_dssp ----------------------------------------------------------------------SSSHHHHHH-
T ss_pred ----------------------------------------------------------------------cCChhhhhH-
Confidence 001111100
Q ss_pred hhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Q 000146 637 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 716 (2052)
Q Consensus 637 ~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~ 716 (2052)
..+-+.+...+.+.++..+.+++.-+..+.....-.....+.+++++. +++..+.-.+++.+..++...+..
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHH
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchh
Confidence 111245666777888888888888877443221111122344455443 333445566777776666553111
Q ss_pred chhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChH
Q 000146 717 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 796 (2052)
Q Consensus 717 ~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k 796 (2052)
.. ..... -..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +.+
T Consensus 302 v~-~~~~~-~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~ 376 (526)
T PF01602_consen 302 VF-NQSLI-LFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAE 376 (526)
T ss_dssp HG-THHHH-HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHH
T ss_pred hh-hhhhh-hheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHH
Confidence 11 11111 11121223345777888888888887777777888887764455777777777777777777633 223
Q ss_pred hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCC
Q 000146 797 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 797 ~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
..++.+.++ +...+..|..
T Consensus 377 ~~v~~l~~l-l~~~~~~~~~------------------------------------------------------------ 395 (526)
T PF01602_consen 377 WYVDTLLKL-LEISGDYVSN------------------------------------------------------------ 395 (526)
T ss_dssp HHHHHHHHH-HHCTGGGCHC------------------------------------------------------------
T ss_pred HHHHHHHHh-hhhccccccc------------------------------------------------------------
Confidence 344444433 3222222222
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATL 955 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al 955 (2052)
+.+..+..++... +.....++..|...+.+ ....+...++
T Consensus 396 ----------------------------------~~~~~i~~ll~~~-----~~~~~~~l~~L~~~l~~~~~~~~~~~~~ 436 (526)
T PF01602_consen 396 ----------------------------------EIINVIRDLLSNN-----PELREKILKKLIELLEDISSPEALAAAI 436 (526)
T ss_dssp ----------------------------------HHHHHHHHHHHHS-----TTTHHHHHHHHHHHHTSSSSHHHHHHHH
T ss_pred ----------------------------------hHHHHHHHHhhcC-----hhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2233333333211 11112233333333332 3344667777
Q ss_pred HHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCccChhHHHH
Q 000146 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKD 1031 (2052)
Q Consensus 956 ~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll~~l~~~L~~~k~np~~R~~ 1031 (2052)
-++|+.+..... .. ....++..+.+.+.+....|+..+..++..+....+.. .+++.+......+..++++|..
T Consensus 437 wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 437 WILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp HHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred hhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 777776666554 11 56778888888999999999999999999999887643 4455555555512236888988
Q ss_pred HHHHHH
Q 000146 1032 LFDWLS 1037 (2052)
Q Consensus 1032 ~l~~L~ 1037 (2052)
+..++.
T Consensus 515 a~~y~~ 520 (526)
T PF01602_consen 515 AREYLR 520 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 32
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.66 E-value=0.00059 Score=84.10 Aligned_cols=455 Identities=13% Similarity=0.146 Sum_probs=265.0
Q ss_pred HHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcch--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 368 TLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 368 ~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
.....++ +....|+..|++|+-.=..-.+..|. -....++....+........++.++..||..++.-+......++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 77888899999998875555666674 33567888889999889999999999999998863122333444
Q ss_pred HHH-----HHHhhcCChHHHHHHHHHHHHHHHhcChhH---------------HH-HhhhhHHHHHHHhhc-------CC
Q 000146 445 EDV-----KTSVKNKVPLVRSLTLNWVTFCIETSSKAA---------------VL-KVHKDYVPICMECLN-------DG 496 (2052)
Q Consensus 445 ~~l-----~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~---------------l~-~~l~~l~p~l~k~l~-------Ds 496 (2052)
+.. ..++++.|-+|+..+.+|-..+.+..-... |. ...+.++|.+.++|. |.
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 432 346788899999999999966554321000 10 123557777777773 22
Q ss_pred ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 497 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 497 ~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
+=.+-.+|..||..+.+..|+..++|.+. +
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~pVl~------------F-------------------------------------- 370 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRPVLG------------F-------------------------------------- 370 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHHHHH------------H--------------------------------------
Confidence 22466777778877777777665444211 1
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
+.+.+.+.+|..
T Consensus 371 --------------------------------------------------------------------vEqni~~~~w~n 382 (858)
T COG5215 371 --------------------------------------------------------------------VEQNIRSESWAN 382 (858)
T ss_pred --------------------------------------------------------------------HHHhccCchhhh
Confidence 123456668999
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHh-cCCC----CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 657 RLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPG----WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~-~~pg----~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
|..|+-.+.....+.... .+..+.- -.|+ ..|+-..|.. ....|+..|.+-
T Consensus 383 reaavmAfGSvm~gp~~~-----~lT~~V~qalp~i~n~m~D~~l~vk~-------------------ttAwc~g~iad~ 438 (858)
T COG5215 383 REAAVMAFGSVMHGPCED-----CLTKIVPQALPGIENEMSDSCLWVKS-------------------TTAWCFGAIADH 438 (858)
T ss_pred HHHHHHHhhhhhcCccHH-----HHHhhHHhhhHHHHHhcccceeehhh-------------------HHHHHHHHHHHH
Confidence 999999988777653221 1111100 0011 1222222222 222222222211
Q ss_pred hhchhhhHHHHHHHHHHHhhhChh----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC----h----HhHH
Q 000146 732 VADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK----L----KDLI 799 (2052)
Q Consensus 732 lgd~K~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~----~----k~li 799 (2052)
+.+ ..+|+ .+....+-++ .-+|++...|.-..-.++..+....-. + ..++
T Consensus 439 va~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 439 VAM----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred HHH----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 111 11111 1122222222 345665555555555555555432100 1 1222
Q ss_pred HHHHhh-CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000146 800 DFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 878 (2052)
Q Consensus 800 ~~l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~ 878 (2052)
.-+.+. -+..-..+.|.++...+++|-.+..+.+.+.+.++-.-.++.|++-..-.... ..
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~---------- 562 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA---------- 562 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh----------
Confidence 222210 12334457899999999999999998888777776666666665543211000 00
Q ss_pred CCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc-hHHHHHHHHHH
Q 000146 879 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLIT 957 (2052)
Q Consensus 879 ~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~~~Al~~ 957 (2052)
.+|. ...+++.+ .-+.-|..++....+.|.+.. ..|+..|.+.|... -..+--.....
T Consensus 563 -~eD~--------~~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~a 621 (858)
T COG5215 563 -TEDQ--------LLVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTA 621 (858)
T ss_pred -hHHH--------HHHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHH
Confidence 0000 00111111 223345556654444455542 44788887777554 33445667788
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc------hhhHHHHHHHHhc
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL------DKMVPYVTTALTD 1021 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l------~~ll~~l~~~L~~ 1021 (2052)
|+.++..+++.|++|+..|+|-+...|....-.|...+..-+..++...|- +.++..+...|.+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss 691 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS 691 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999998888888887762 3334444555544
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.0089 Score=80.62 Aligned_cols=756 Identities=14% Similarity=0.111 Sum_probs=374.9
Q ss_pred hHHHHHHHHhh--ccChhhHHHHHHHHHHHHHHhCCC---CcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh--C
Q 000146 167 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI--G 239 (2052)
Q Consensus 167 ~v~e~Ll~~l~--~K~PKvv~~~l~~L~~~l~~FG~~---~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l--G 239 (2052)
.++..|.+.+. +-|-.|+-.++.||..+|...+.+ ....+..+-.+..+.-|..+-||.+|...+..+...- +
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~ 172 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFA 172 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCC
Confidence 44555556555 678889999999999999887763 3457788888889999999999999999988876521 1
Q ss_pred CchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000146 240 KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319 (2052)
Q Consensus 240 ~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 319 (2052)
++.-.+.... ..++..+.+++.-++...+..+|+-.--+ |++.-. |..
T Consensus 173 ~~~~HpA~~~-----vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~-p~~ 220 (1176)
T KOG1248|consen 173 PDAEHPASLS-----VAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTF-PRP 220 (1176)
T ss_pred ccccchHHHH-----HHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccC-CHH
Confidence 1111111110 11222333333211100011111110000 000000 111
Q ss_pred ccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcCcCHHHHHHH-HHHHHH----HH
Q 000146 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGN----LA 392 (2052)
Q Consensus 320 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~k-i~~~dy~~l~~~L~k~l~D~N~~V~~~A-~~~l~~----La 392 (2052)
.+..+. +....-.....--.+-++++.+..+-+ .+. +...-+.-++.+|..+--+.|-.....+ ++++.. ++
T Consensus 221 li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la 299 (1176)
T KOG1248|consen 221 LIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILA 299 (1176)
T ss_pred HHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH
Confidence 112222 233333455666678889999988763 333 2222344455555444323332222222 122211 11
Q ss_pred HHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-HHHHHHH-HHHHhhcCChHHHHHHHHHHHHHH
Q 000146 393 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDVVED-VKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 393 ~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l~~ll~~-l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
..-...--.....+++.++..+-.....+.+++.+++..+.+. |++ .+.+... +...|.-|.-.+=..++..+..++
T Consensus 300 ~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~f 378 (1176)
T KOG1248|consen 300 TLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALF 378 (1176)
T ss_pred HhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 1111111134566777777766777888999999999999987 766 3444444 344566677777788999999999
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHh-hc-----cHHH---HHHHHHHHhc
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE-KL-----DDVR---RNKLSEMIAG 541 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~-~L-----d~~k---~kkI~e~~~~ 541 (2052)
+.+++-. .+++-..+..+...=.+.+-.-+..=-+|+|.....+|-+.+-..++ .| +..+ .--|++++.+
T Consensus 379 ek~G~~s-~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~ 457 (1176)
T KOG1248|consen 379 EKCGELS-GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIG 457 (1176)
T ss_pred HHhhhhc-CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhcc
Confidence 9886522 12222222222222223333444467788998888888433322211 00 0000 0011111110
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCcchhh--hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCC
Q 000146 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFV--RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 619 (2052)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~ 619 (2052)
+. .+- -....+ ..+-. .+ ..+..++
T Consensus 458 A~-------------------La~--F~~~ivpla~sl~----~K----------------------------~~~l~~~ 484 (1176)
T KOG1248|consen 458 AS-------------------LAF--FTEYIVPLAMSLQ----LK----------------------------AKKLKEA 484 (1176)
T ss_pred Cc-------------------HHH--HHHHHHHHHHHHH----HH----------------------------HHhhhhc
Confidence 00 000 000000 00000 00 0000000
Q ss_pred CCCCCCCCCCHHHHHHHhhccCc------HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc
Q 000146 620 PEDVEPSEMSLEEIESRLGSLIP------ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 693 (2052)
Q Consensus 620 ~~~~~~~~~s~ee~e~~~~~ll~------~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D 693 (2052)
. . ... ..+-+..++=.++| -|+..-+.+ ....+...+.+.|
T Consensus 485 ~--~-~~~-~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~-------------------------la~~l~~al~~~~---- 531 (1176)
T KOG1248|consen 485 G--S-QVS-LYDTLVDQLWSLLPGFCNYPVDLAESFTD-------------------------LAPILGAALLKRP---- 531 (1176)
T ss_pred c--C-cHH-HHHHHHHHHHHhChhhhCCCccHHHHHHH-------------------------HHHHHHHHHhcch----
Confidence 0 0 000 01111111111111 000000000 0011111111111
Q ss_pred cHHHHHHHHHHHHHHHHHHcC---------CCchhhHHHHHHHHHHhhhch-----h---hhHHHHHHHH-HHHhhhChh
Q 000146 694 KNVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAVGPG 755 (2052)
Q Consensus 694 sN~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgd~-----K---~r~~a~e~L~-~l~E~~~~~ 755 (2052)
-....++..|..+++.+. .+..+.+...||.++..-+.+ + .+....+.+. .+.+.++.+
T Consensus 532 ---elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d 608 (1176)
T KOG1248|consen 532 ---ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD 608 (1176)
T ss_pred ---HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH
Confidence 111222333333343321 122334455566555443321 1 2222222222 333444333
Q ss_pred HHHHHHHHHHh----h---CCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHh
Q 000146 756 FIFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 828 (2052)
Q Consensus 756 ~Vl~~L~~~l~----~---~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~ 828 (2052)
|...+...+. . .+.+..+...|+.+..+..-... -++..+....... ..+++..|+.-+..+|.++-..
T Consensus 609 -v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 609 -VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred -HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHHhcC
Confidence 3333333321 1 22333333334333333321111 1233444444444 5666889999999988888765
Q ss_pred hChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHH
Q 000146 829 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 908 (2052)
Q Consensus 829 ~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~ 908 (2052)
+....+..+....+.+. +.+.+.+..--.
T Consensus 685 --~s~~~~~~q~i~~I~n~-------------------------------------------------L~ds~qs~~~~~ 713 (1176)
T KOG1248|consen 685 --PSGEGLVEQRIDDIFNS-------------------------------------------------LLDSFQSSSSPA 713 (1176)
T ss_pred --CchhhHHHHHHHHHHHH-------------------------------------------------HHHHHhccchHH
Confidence 22222221111111222 222233333345
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHH--H---hChhh-HHhhhHHHHHHHH
Q 000146 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS--A---MGPAV-EKSSKGVLSDILK 982 (2052)
Q Consensus 909 R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~--a---lg~~~-~~~~~~llp~ll~ 982 (2052)
|...+.+|..|++..+.....-....+..++... +|-|..-++.|..||..|+. . .|.+= ...+..+++.|-.
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence 6677777777776432111111112233333333 89999999999999988882 1 23221 2345666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhh
Q 000146 983 CLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHL 1052 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~l 1052 (2052)
.+......++.+.+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .++...+
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~L 870 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEEL 870 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence 6666667777666788888876542 345666667777765 599999999999998888775 3455556
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhh
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
++.+...+.|....+|++....|..+.+.+|.+.+..++. .....+...|.+
T Consensus 871 L~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK 922 (1176)
T KOG1248|consen 871 LPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHH
Confidence 6668888899999999999999999999999998887764 444444455544
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.65 E-value=0.00066 Score=83.67 Aligned_cols=467 Identities=15% Similarity=0.165 Sum_probs=266.9
Q ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHH-hh---------------hcchh-hhhhHHHHHHHHhccCc-------HHHHHH
Q 000146 369 LKKLITDVNIAVAVEAIQAIGNLARG-LR---------------THFSG-SSRFLLPVLLEKLKEKK-------PTVAES 424 (2052)
Q Consensus 369 L~k~l~D~N~~V~~~A~~~l~~La~~-L~---------------~~f~~-~~~~llp~LL~klkdkK-------~~V~~a 424 (2052)
....++..|-.|...|......++.. .. .+|.. .+..++|.||..+-... =++.-+
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 33456688999988888777666641 11 12332 25568999998884422 247778
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHH
Q 000146 425 LTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 502 (2052)
Q Consensus 425 a~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~ 502 (2052)
+..||.-+... | .-+..++.-+...+++.+|.-|..+.-.+..++..-.+..+.++.+..+|.+...++|+.--|.+
T Consensus 348 A~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 348 ASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 99999988876 3 22455667777788899999999999999999887667778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccC
Q 000146 503 AAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 582 (2052)
Q Consensus 503 aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~ 582 (2052)
.+..|++.|..++.+- ++|- ..|..... ..+-|..
T Consensus 427 ttAwc~g~iad~va~~-i~p~-~Hl~~~vs----a~liGl~--------------------------------------- 461 (858)
T COG5215 427 TTAWCFGAIADHVAMI-ISPC-GHLVLEVS----ASLIGLM--------------------------------------- 461 (858)
T ss_pred HHHHHHHHHHHHHHHh-cCcc-ccccHHHH----HHHhhhh---------------------------------------
Confidence 9999999998877642 2221 11111000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHH
Q 000146 583 GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAIS 662 (2052)
Q Consensus 583 ~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale 662 (2052)
|-|..........+.+. +
T Consensus 462 -----------------------------------D~p~~~~ncsw~~~nlv---------------------------~ 479 (858)
T COG5215 462 -----------------------------------DCPFRSINCSWRKENLV---------------------------D 479 (858)
T ss_pred -----------------------------------ccchHHhhhHHHHHhHH---------------------------H
Confidence 00000000000000000 0
Q ss_pred HHHHHHHh-ccccchHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhH
Q 000146 663 SLRQQVEA-VQNLDQSVEILVRLVCMLPG--WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 739 (2052)
Q Consensus 663 ~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg--~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~ 739 (2052)
.+.+.... ......--..|+..|.+.-. .+|+|. ....+++|..++.-+++-.......+...+.+|++.
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~--R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~----- 552 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNL--RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE----- 552 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH-----
Confidence 00000000 00000011222222222111 355554 456678888888776543333344444444444443
Q ss_pred HHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh-HHHHHHhhCCCCCcHHHHHHH
Q 000146 740 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAATRNAT 818 (2052)
Q Consensus 740 ~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~-li~~l~~~gL~~~n~~VR~aA 818 (2052)
++......+..+ . ..---.+++--+..|..+|..++...-++.+ +++.+... ++.+++.+-.
T Consensus 553 ----~isv~~q~l~~e---D-------~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~-- 615 (858)
T COG5215 553 ----CISVLGQILATE---D-------QLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAF-- 615 (858)
T ss_pred ----HHHHhhhhhhhH---H-------HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhh--
Confidence 222211111110 0 0011234556677888889999986556655 77777766 7777665322
Q ss_pred HHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHH
Q 000146 819 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 898 (2052)
Q Consensus 819 ~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll 898 (2052)
+.+|..+| ++...|++.|++... ++.|-+.
T Consensus 616 ----~dV~~aIs------------al~~sl~e~Fe~y~~----------------------------------~fiPyl~ 645 (858)
T COG5215 616 ----GDVYTAIS------------ALSTSLEERFEQYAS----------------------------------KFIPYLT 645 (858)
T ss_pred ----hHHHHHHH------------HHHHHHHHHHHHHHh----------------------------------hhhHHHH
Confidence 22222221 233444555554310 1223333
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGV 976 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~~~~~~~~~l 976 (2052)
+.+...+..+-..++-.++++...-+..+.+.. ..++..|.+.|+.+ +..+.-..|.+.+.||.++|.+|.+|+..+
T Consensus 646 ~aln~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 646 RALNCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444555566677777777654333333321 45678888888654 467888889999999999999999999988
Q ss_pred HHHHHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Q 000146 977 LSDILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTA 1018 (2052)
Q Consensus 977 lp~ll~~l~-----------D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~ 1018 (2052)
+--+.+.-. |=...+++....+...+..... ++.++|++...
T Consensus 725 m~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~si 779 (858)
T COG5215 725 MMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISI 779 (858)
T ss_pred HHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHH
Confidence 766554332 1123456666666666666655 77788865543
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.62 E-value=2.7e-06 Score=118.60 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=170.0
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhC--hhhH
Q 000146 757 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 834 (2052)
Q Consensus 757 Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 834 (2052)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456777775 899999999999998764 32 2456667777 999999999999999877743222 1222
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 914 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale 914 (2052)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222122211100 0 0134677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000146 915 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 994 (2052)
Q Consensus 915 ~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~a 994 (2052)
.|..+- . ...|...+.|.|..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 987641 0 134667899999999999999888775321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000146 995 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1074 (2052)
Q Consensus 995 a~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~ 1074 (2052)
|..+|..+.. ...+.+.+..+|.++ ++.+|.+++..|... + ....+.+|..+|.|.+++||++|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999887632 234556788889876 589999999888742 1 13456778999999999999999999
Q ss_pred HHHH
Q 000146 1075 IVEI 1078 (2052)
Q Consensus 1075 L~~l 1078 (2052)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.60 E-value=7.9e-05 Score=98.97 Aligned_cols=460 Identities=16% Similarity=0.166 Sum_probs=296.6
Q ss_pred hhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 330 ~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
...+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.+++.
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~ 118 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPD 118 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHH
Confidence 34456788888887777776665321 01123366788888889999999999999999872 2356778999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~-ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
+...+.++++.||..|..|+..++......++. +++.+...+.+++|.|+..++..+..+ .+++......++.+...
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHH
Confidence 999999999999999999999999872233455 789999999999999999999999887 34443333456777788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHhCChhH--HHhHhhccHHHH----HHHHHHHhcCCCCCCCCCCCcccCCCCCCC
Q 000146 489 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGSV 562 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~--~~~l~~Ld~~k~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 562 (2052)
+.+.+.+.+|-++-...+++..+...-.+. . ..+++.+.+.-+ .-+-+++.-
T Consensus 197 L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 197 LCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 888889999998877777776443221111 1 122222221111 001110000
Q ss_pred CCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000146 563 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 642 (2052)
Q Consensus 563 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 642 (2052)
.. .. ..+.+ ... .+-
T Consensus 255 ------------------i~--------------------------------~l----------~~~~~-~~~----~~~ 269 (526)
T PF01602_consen 255 ------------------II--------------------------------KL----------SPSPE-LLQ----KAI 269 (526)
T ss_dssp ------------------HH--------------------------------HH----------SSSHH-HHH----HHH
T ss_pred ------------------HH--------------------------------Hh----------hcchH-HHH----hhH
Confidence 00 00 00011 111 112
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..+...|.++++..|..+++.+..+.....+.-......+.++. .|.+..|...+++++..++.. ..+.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVK 338 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchh
Confidence 45678888999999999999998776554111112233333332 356677889999999887764 2566
Q ss_pred HHHHHHHHhhh---chhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh
Q 000146 723 LCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 723 ~il~~LveKlg---d~K~r~~a~e~L~~l~E~~~~--~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
.++..|..-+. |...+..+...+..+++.+.+ ++.+..+++.+ ...+..+..+++..+..++...... -..
T Consensus 339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~ 414 (526)
T PF01602_consen 339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REK 414 (526)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHH
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHH
Confidence 67777776663 456888999999999998764 56788888876 5666778889999999998764332 123
Q ss_pred HHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCC
Q 000146 798 LIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 798 li~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
++..+... +. -.++.++.++..++|+....... .+ ..+.++..+
T Consensus 415 ~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l---------------------------- 459 (526)
T PF01602_consen 415 ILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSL---------------------------- 459 (526)
T ss_dssp HHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHH----------------------------
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHH----------------------------
Confidence 34444333 33 46788999999999987665543 00 111122222
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhhhc--cchHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLVMA 953 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~aL~~rL~--DsN~~V~~~ 953 (2052)
.+.+.+..-.+|...+..+.++.... .. ...+++...+..... +.|..|+..
T Consensus 460 ---------------------~~~~~~~~~~vk~~ilt~~~Kl~~~~----~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 460 ---------------------IENFIEESPEVKLQILTALAKLFKRN----PENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp ---------------------HHHHTTSHHHHHHHHHHHHHHHHHHS----CSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred ---------------------HHhhccccHHHHHHHHHHHHHHHhhC----CchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22233333457788888888887531 21 122477777777776 779999999
Q ss_pred HHHHHHHHH
Q 000146 954 TLITLGAVA 962 (2052)
Q Consensus 954 Al~~l~~la 962 (2052)
|...+..+-
T Consensus 515 a~~y~~ll~ 523 (526)
T PF01602_consen 515 AREYLRLLN 523 (526)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 998887654
No 37
>PRK09687 putative lyase; Provisional
Probab=98.57 E-value=6.7e-06 Score=99.13 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=109.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.+...+.|++|.+|..++..|..+ . -.+.+..|...|.|.+..|+..|+..|+.+ + ...+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------N---DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------C---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHH
Confidence 455667888999999999888543 1 156788899999999999999998888876 1 12346
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1055 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1055 (2052)
.++.++..+.|.+..||..|..+|.. ++-...+|.|...|.+. .+|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHHH
Confidence 77888999999999999998888876 45567889899998864 256666655553 221 356666
Q ss_pred HHhhcC-CCCHHHHHHHHHHHH
Q 000146 1056 ASIAMT-DKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1056 l~~~L~-D~~~dVRkaA~~~L~ 1076 (2052)
+...++ +.++.||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 777774 789999999887764
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.47 E-value=0.0027 Score=85.69 Aligned_cols=384 Identities=14% Similarity=0.120 Sum_probs=238.4
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++.+.|.+.+=.+|++|++.+....... .|...++..+.+.+.-.|..+.....-.+..+++. -...+-..+
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~----~pelalLaI 107 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL----QPEKALLAV 107 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----ChHHHHHHH
Confidence 4555667777788899999987755222 35677777777788867887777776666655431 122366789
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 487 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 487 (2052)
..+.+-+.++++.||..|..+|..+-.. .-++.+++.|..++.|++|-||..++..+.+++...+.- +. -..+.+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v~--~~~~~~ 182 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-FY--QQDFKK 182 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-cc--ccchHH
Confidence 9999999999999998776665544321 223455666778889999999999999999988765432 11 124667
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHH-------HhHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCcccCC
Q 000146 488 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-------RSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARVQT 557 (2052)
Q Consensus 488 ~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~-------~~l~~L---d~~k~kkI~e~~~~~~~~~~~~~~~~~~~~ 557 (2052)
.+.++|.|+++.|...|..+|-.+...-+.. +. .++..| ++-.+-.|.+.+..
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---------------- 245 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAA---------------- 245 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh----------------
Confidence 7888899999999999999998887654432 21 111111 11111111111110
Q ss_pred CCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHh
Q 000146 558 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 637 (2052)
Q Consensus 558 ~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 637 (2052)
..|. +.++.+..
T Consensus 246 --------------------------y~P~-----------------------------------------~~~e~~~i- 257 (746)
T PTZ00429 246 --------------------------QRPS-----------------------------------------DKESAETL- 257 (746)
T ss_pred --------------------------cCCC-----------------------------------------CcHHHHHH-
Confidence 0000 01222211
Q ss_pred hccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHH---HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000146 638 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILV---RLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 638 ~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv---~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
-..+..+|.|.|--.-++++.-+..+....++. ...+.+. ..+. .+..+...++-.+|..+..++...+
T Consensus 258 ----l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv---~L~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 258 ----LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALL---TLSRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHH---HhhCCCccHHHHHHHHHHHHHHHCH
Confidence 134567788999888888888777554322110 0011111 1111 1222233455566666666666643
Q ss_pred CCchhhHHHHHHHHHHhhhch-hhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 000146 715 KFPKKCVVLCLLGISERVADI-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 793 (2052)
Q Consensus 715 ~~~~~~~~~il~~LveKlgd~-K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l 793 (2052)
.+ +..-+...+-+..|+ -+|....++|..++.....+.|+.+|..++ ...++..+.+++..++.+...|..
T Consensus 330 ~l----f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~~--- 401 (746)
T PTZ00429 330 NL----LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVDS--- 401 (746)
T ss_pred HH----HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhChH---
Confidence 32 222233344566775 478889999999999888889999999987 577888999999999888876643
Q ss_pred ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 794 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 794 ~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
..+.++.++..+ +++... +-..++..+..+.+
T Consensus 402 ~a~~cV~~Ll~l-l~~~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 402 VAPDCANLLLQI-VDRRPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHHHHHHH-hcCCch-hHHHHHHHHHHHHH
Confidence 244566666666 654333 33345555555543
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=98.45 E-value=0.005 Score=83.14 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHH
Q 000146 421 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 500 (2052)
Q Consensus 421 V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~V 500 (2052)
.++++...+..+... .....++++++..+.+++..+|+-+..++.++.+..+.. .-..+..+.+-+.|++|.|
T Consensus 49 kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 49 KKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcCCCCHHH
Confidence 355555555554432 567889999999999999999999999998876544321 1245788899999999999
Q ss_pred HHHHHHHHHH
Q 000146 501 RDAAFSVLAA 510 (2052)
Q Consensus 501 R~aA~~~l~~ 510 (2052)
|.-|.++++.
T Consensus 122 RaLALRtLs~ 131 (746)
T PTZ00429 122 RALAVRTMMC 131 (746)
T ss_pred HHHHHHHHHc
Confidence 9999998864
No 40
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.2e-06 Score=98.00 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=149.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
..+..|++++|....+|+..+..+.... +..-...+.+++-++.+-++..+..|..+||-+++.|++.++..+.+....
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999988753 444444568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC----Cchhh
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1051 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ 1051 (2052)
++..++.+-.+.|..||+.|..+|.+++.+.....+++.|...+++. ++..|.........++...... ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 6777766655555444444321 12234
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1052 LLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1052 ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
++..+-.-+.|+-+.+|++|...+....
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhHH
Confidence 4455666788999999999986665443
No 41
>PRK09687 putative lyase; Provisional
Probab=98.30 E-value=4e-05 Score=92.45 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
+.|++|.+|..|+..|+.+.... ..+ ...++..|...+.|.+..|+..++..|+.+. -...++.+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~---~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKN---PLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccccc---ccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 58899999999999998875321 111 2567778888899999999999998886442 24578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1060 (2052)
+..+.|....||..|..+|+.+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 333457888899999876 689999999988752 1246788899999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 000146 1061 TDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1061 ~D~~~dVRkaA~~~L~~l~ 1079 (2052)
+|.+ ||..|..+|+.+-
T Consensus 233 ~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 233 KKGT--VGDLIIEAAGELG 249 (280)
T ss_pred cCCc--hHHHHHHHHHhcC
Confidence 9865 7877777776543
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=0.00063 Score=90.60 Aligned_cols=330 Identities=17% Similarity=0.115 Sum_probs=200.7
Q ss_pred hhHHHHHHHHHHHhhhChh-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCc
Q 000146 737 TRAHAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSA 811 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~-----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n 811 (2052)
+|..|.+.+..+.+.+..+ .+.+.++.. .+.++++++--...+...+...||...-. -.+....-.. +++.-
T Consensus 292 Vr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~ 368 (759)
T KOG0211|consen 292 VREAAVESLVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEE 368 (759)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchh
Confidence 5666667676666665554 344444444 25667777766666777766666663221 1222222223 55666
Q ss_pred HHHHHHHHHHHHHHHHhhChhh--HhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccc
Q 000146 812 AATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 889 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l--~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dI 889 (2052)
.++|.++..-...+..+...+- ....+.+-|.++..+.+.-..+ |+... +...+....+|-..-
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v------------r~a~a--~~~~~~~p~~~k~~t 434 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV------------RSALA--SVITGLSPILPKERT 434 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH------------HHHHh--ccccccCccCCcCcC
Confidence 6666666665555555544211 1111222233333322211111 10000 000111222332223
Q ss_pred cccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh
Q 000146 890 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 968 (2052)
Q Consensus 890 s~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~ 968 (2052)
...+.+.++..+.|..-.+|...++.+..+.. .+..+.-.. -..+++++...-.|.+-.++...+..+..++.-.|..
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~ 513 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE 513 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH
Confidence 33455677888899999999998877744433 222222222 2457788888889999999999999999999999855
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 969 ~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
|.. ..+.+.+..-+-|.--.+|.+|...+..++...|. ..+++.++....+. |.-.|..++.-+....+-++
T Consensus 514 ~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 514 FFD--EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred Hhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhc
Confidence 432 22555566667888889999999999999999982 34556555555544 45678888888875554444
Q ss_pred CCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHH
Q 000146 1045 GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1045 ~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~ 1088 (2052)
.......+++++.....|.+++||-.+.+.|..++..+......
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~ 633 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD 633 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence 43334566777888889999999999999998888877764433
No 43
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.19 Score=67.65 Aligned_cols=598 Identities=14% Similarity=0.112 Sum_probs=304.1
Q ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000146 364 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 439 (2052)
Q Consensus 364 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~---~~~ 439 (2052)
.++..|...++|....|+.-|++-++.++..+... .+..++..+++.+..-. ...---+.-+|-.+...+ ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 35566777788999999999999999999988743 46667777777665444 222222223333333221 233
Q ss_pred HHHHHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHhhcCCChHHHHHHHHHHHH
Q 000146 440 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 440 l~~ll~~l~~~L~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
++++++.|..++. .....||-.++-++=.+.....+..+.+++..+.+.+ ..++-|..-.+|.+|..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 6788888877763 1235788888777777666667777777777666655 578899999999999988865
Q ss_pred HHHHhCChhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCC
Q 000146 511 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 589 (2052)
Q Consensus 511 l~~~~Ge~~~-~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 589 (2052)
..-..|+-+. .+++...|-..-.....++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~------------------------------------------------- 528 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYL------------------------------------------------- 528 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHH-------------------------------------------------
Confidence 5544444311 11222211100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000146 590 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 669 (2052)
Q Consensus 590 ~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 669 (2052)
++ ..+..+.+.....++..-+..++.|=+-+.|..|...|.++..
T Consensus 529 --------------------------------~l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 529 --------------------------------DL---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred --------------------------------HH---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 00 0111222222333444555566888788899999888887443
Q ss_pred hccccchHHHHHHHHHh----cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH---HHHHHHHHHhhhchhhhHHHH
Q 000146 670 AVQNLDQSVEILVRLVC----MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV---VLCLLGISERVADIKTRAHAM 742 (2052)
Q Consensus 670 ~~~~~~~~~~~Lv~~L~----~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~---~~il~~LveKlgd~K~r~~a~ 742 (2052)
...+. .....+.+++. ..+.+...-+.+....+..+..+-.....+....+ ..+++.+.++-.....++.-.
T Consensus 574 ~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMR 652 (1133)
T ss_pred hhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHH
Confidence 31110 01112333331 11112222222222222222211111111112222 224566665555544334444
Q ss_pred HHHHHHHhhhCh-------hHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCc
Q 000146 743 KCLTTFSEAVGP-------GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA 811 (2052)
Q Consensus 743 e~L~~l~E~~~~-------~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n 811 (2052)
.+...+.|.++. +++.+..-..+ ..+.| .+|.++...+++++..|-...- ...+++......+-...+
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 555566665442 34444322222 23445 6788888888888877644311 111354444332133346
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 891 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~ 891 (2052)
..+|..-+..++.+-..+ +... .++-+.
T Consensus 732 ~~~r~g~~lal~~lp~~~---i~~~-------~q~~lc------------------------------------------ 759 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSEL---IHRH-------LQEKLC------------------------------------------ 759 (1133)
T ss_pred HHHHHHHHHHHccCcHHh---hchH-------HHHHHH------------------------------------------
Confidence 666766555444332111 0000 011110
Q ss_pred cccHHHHhhcCCCCh-HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh----c----cchHHHHHHHHHHHHHHH
Q 000146 892 KFTPTLVKSLESPDW-KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----Y----DSNKNLVMATLITLGAVA 962 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~W-k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL----~----DsN~~V~~~Al~~l~~la 962 (2052)
..++......-| ..|..++.++..++..-.....+..+.+++..|.+.+ . |.-.-|+.+|+..+..+-
T Consensus 760 ---~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 760 ---KLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred ---HHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 011111111115 3488888888877764222234444555555555544 3 444568899999888887
Q ss_pred HHhC--hhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH---HHh-cCccChhHHHHHHHH
Q 000146 963 SAMG--PAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT---ALT-DAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 963 ~alg--~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~---~L~-~~k~np~~R~~~l~~ 1035 (2052)
..+. +-++.+ +..++..+++..-|+-...|+.|..|+..+..+-.--..++..-. .+- +...++..=...+..
T Consensus 837 ~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~ 916 (1133)
T KOG1943|consen 837 DTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFP 916 (1133)
T ss_pred hhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhhh
Confidence 6654 334443 555667788888888888899999999998877221122332221 111 000001000111111
Q ss_pred HHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000146 1036 LSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1110 (2052)
Q Consensus 1036 L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~ 1110 (2052)
+...+.. .+.. .+.+..+...+.---.+.++.|.+++..+++ +...+.+-.+.....-...+.+++-..+
T Consensus 917 L~~~Ll~---~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 917 LNSSLLE---LPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred HHHHHHh---hHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 1111111 1111 2333334444444445667777777777777 5555555555555555666666554444
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.56 E-value=0.056 Score=71.18 Aligned_cols=178 Identities=20% Similarity=0.263 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 336 TKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 336 ~kWkeR~eaL~~L~~L~~~~k----i~~-~dy~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
.|---|..+++.|..++..+. +.. +-+..|+..|...-.|+ +...+-..+...+.++..-...+....+.++.
T Consensus 214 dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLE 293 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 333345666676666664221 111 22233333333332344 33344444567777776522233333455666
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 475 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-- 475 (2052)
.+++.+....+..+..|.+|+-.+... ..+ +..++..+.....+....+|..+++.++.++.....
T Consensus 294 ~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~ 372 (503)
T PF10508_consen 294 RLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQ 372 (503)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 666666778888999999998887643 111 233344444445555668999999999999765432
Q ss_pred -hHHHHhh---------hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 476 -AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 476 -~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
..+.... +.....+...+.-+.|++|-+|...+..+...
T Consensus 373 ~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 373 DNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 1111111 11111678888999999999999999888744
No 45
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.56 E-value=0.0057 Score=75.02 Aligned_cols=190 Identities=17% Similarity=0.107 Sum_probs=139.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhc-C--CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAS-T--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~-~--~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 402 (2052)
++.+.+.+++=+.|.++|+.+..+.. . +......+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 56677788999999999999988663 2 222235678999999999984444667889999999999887 444566
Q ss_pred hhhHHHHHHHHhccCc--HHHHHHHHHHHHHHHHhcCCCH---H---HHHHHHHHHh--h--c--------CChHHHHHH
Q 000146 403 SRFLLPVLLEKLKEKK--PTVAESLTQTLQAMHKAGCLNL---V---DVVEDVKTSV--K--N--------KVPLVRSLT 462 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK--~~V~~aa~~aL~ai~~~~~~~l---~---~ll~~l~~~L--~--~--------Knp~vR~~~ 462 (2052)
...+.|.|...+.|.. ..+|.++..||-.+.-.+|... . ++++.|+... + . .++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 7788888888888764 3566666666655543323333 3 3344333221 1 1 135788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 463 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 463 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
+.--..++...+...+...+...+|.+..+|+..+.+||-+|-++++.+.....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888877667777888999999999999999999999999999988774
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.51 E-value=0.15 Score=67.15 Aligned_cols=399 Identities=15% Similarity=0.173 Sum_probs=231.8
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhc
Q 000146 761 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840 (2052)
Q Consensus 761 L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 840 (2052)
++..+ +..+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~------- 112 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAA------- 112 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHH-------
Confidence 44443 344666666777778888876554433 4567777777 4999999999998887544432211000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000146 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 920 (2052)
Q Consensus 841 kP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll 920 (2052)
+ .+...+ +-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 113 ------------~-----------------------------~~~~~~----l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 113 ------------Q-----------------------------LLVDNE----LLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred ------------H-----------------------------HhcCcc----HHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 0 000011 3456778889999999999999999988
Q ss_pred HhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHH
Q 000146 921 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 997 (2052)
Q Consensus 921 ~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR~aa~~ 997 (2052)
... ..+. ..| .++...|...+..+|..++..++.++..++..-...+ .++.. +++.++..+.+....++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1111 111 2237777888877788888888888888875543333 44443 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCccCh-hHHHHHHHHHHHHhccCCC--CC----chhhhHHHHHhhcCCCC
Q 000146 998 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FP----DAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 998 aL~~i~~~~~-l-----~~ll~~l~~~L~~~k~np-~~R~~~l~~L~~~l~~~~~--~~----~~~~ll~pl~~~L~D~~ 1064 (2052)
.|..++..-+ . ..+++.|...+.+...+| ....-+.+.+ +.+.+... .. ....++..+...++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998433 1 235666777776544455 2222222222 12222111 11 22345555667778999
Q ss_pred HHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 1065 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1143 (2052)
Q Consensus 1065 ~dVRkaA~~~L~~l~~~~-G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1143 (2052)
...|..|..+++.+.... |...+ ..+-.+.-...+..+....+.
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~-------------------------------- 348 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKS-------------------------------- 348 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcC--------------------------------
Confidence 999999999999776433 33322 122222222222222211110
Q ss_pred cCCCCCCCCCCCcccccchhhhhh-hhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhH---H-HHHhh
Q 000146 1144 SRVIPTKGARPESIMSVQDFAVQS-QALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFRE---D-LHRRL 1218 (2052)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~---~-l~~~l 1218 (2052)
++ .. .+. ...++ +.++. ...+...+++-.+...+...++. . ++-.+
T Consensus 349 -------~~-~~--lk~--r~l~al~~il~-----------------~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~ 399 (503)
T PF10508_consen 349 -------GS-TE--LKL--RALHALASILT-----------------SGTDRQDNDILSITESWYESLSGSPLSNLLMSL 399 (503)
T ss_pred -------Cc-hH--HHH--HHHHHHHHHHh-----------------cCCCCchHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 00 00 000 00000 00000 00111222332333333333222 1 44445
Q ss_pred cCcCHHH-HHHHHHHHHHhcCcCh-hhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHH
Q 000146 1219 LSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1282 (2052)
Q Consensus 1219 fs~D~k~-~l~al~~L~~~l~~~~-~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~ 1282 (2052)
...+|-+ |++|+..|.....+.- ...+.+.--++.|++-|-.|++..+...-.++++.+.....
T Consensus 400 ~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 400 LKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 5678764 8999998888776642 22344456689999999999999999999999998765444
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.42 E-value=0.0005 Score=69.12 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 340 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 340 eR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.|+.+|..|.+++ .-++-....+..|++.+.+.+.|.+.+|+..||+++..+++..+..+-+|...++..|...+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998875 323223344578999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000146 419 PTVAESLTQTLQAMH 433 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~ 433 (2052)
++|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999888 5566554
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.31 Score=63.60 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChH
Q 000146 420 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 420 ~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
-.++|..-.+.-|+.. .....+++++......||+.||.-.-.+|.+..+..+.-.+. =+..+.+.|.|+++.
T Consensus 51 ~KleAmKRIia~iA~G--~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKG--KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 4566665555555543 568899999999999999999999999999988765432221 145678999999999
Q ss_pred HHHHHHHHHHHHH
Q 000146 500 VRDAAFSVLAAIA 512 (2052)
Q Consensus 500 VR~aA~~~l~~l~ 512 (2052)
+|..|..+|..|-
T Consensus 124 iRasALRvlSsIR 136 (968)
T KOG1060|consen 124 IRASALRVLSSIR 136 (968)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886553
No 49
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.031 Score=71.07 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhH
Q 000146 755 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834 (2052)
Q Consensus 755 ~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 834 (2052)
+.++..+... .+...++||..+++.|-++-+ |.+ + -+.+.....++ +.|.+..||.+|++++............
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L-~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-L-SKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-c-cHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455544444 578899999999998877766 442 1 24566677788 9999999999999998777655422221
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-------CChH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-------PDWK 907 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-------~~Wk 907 (2052)
.+-++ .+..++.|.++-..-. .-.-.+|....+ .+ ....++..+++.+.-| .-|+
T Consensus 271 ~e~~e-----~kl~D~aF~~vC~~v~-D~sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESEE-----EKLKDAAFSSVCRAVR-DRSLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhhh-----hhhHHHHHHHHHHHHh-cCceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 11111 3344445544311000 000011111000 00 0011122233322211 1233
Q ss_pred HHHHHHHHHHHHHH-hccccCCCCC------h-------hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 908 VRLESIEAVNKILE-EANKRIQPAG------T-------GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 908 ~R~eale~L~~ll~-~a~~~I~~~~------~-------~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
.-.+.-..+..=-+ ..+++....- - .--..+|..-|.|-=-.|+.+|...+..|+..-. .|.
T Consensus 333 ~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA 408 (823)
T KOG2259|consen 333 TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFA 408 (823)
T ss_pred hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcH
Confidence 32222222211000 0011111000 0 0123566666777777888888888888875432 234
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l-~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
...+--++..|+|.-..||--|+.+|..+..+..+ +..++.+...|.+. ++++|.++.+.|.. .+......+.-.
T Consensus 409 ~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence 55566677888888888999999999988888766 45788888888876 57888888777753 233332233344
Q ss_pred HHHHHhhc
Q 000146 1053 LKPASIAM 1060 (2052)
Q Consensus 1053 l~pl~~~L 1060 (2052)
+..++++|
T Consensus 485 v~~lL~~L 492 (823)
T KOG2259|consen 485 VAHLLKNL 492 (823)
T ss_pred HHHHHHHh
Confidence 44566665
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=1.5 Score=59.68 Aligned_cols=497 Identities=17% Similarity=0.149 Sum_probs=257.2
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHhh----cCChHHHHHHHHHHHHHHHhc
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l---~~ll~~l~~~L~----~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
-+++.++-.|+..+.|+...||=++.+.+..+... .+. ++++..+++.+. +..|- +++.+|+.+...-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r--lp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR--LPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcC
Confidence 46778999999999999999999999999988775 332 334444444222 23333 5555655533221
Q ss_pred ChhHHHHhhhhHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCC
Q 000146 474 SKAAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD 545 (2052)
Q Consensus 474 ~~~~l~~~l~~l~p~l~k~l~--------Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~ 545 (2052)
=.+...+..++|.+.+.+. -.-..||++|+-.+|++.+...-..+.+++..|-..-.
T Consensus 412 --lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL------------- 476 (1133)
T KOG1943|consen 412 --LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL------------- 476 (1133)
T ss_pred --CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH-------------
Confidence 0122345789999999884 23457999999999999999886667776665532111
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000146 546 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 625 (2052)
Q Consensus 546 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 625 (2052)
T Consensus 477 -------------------------------------------------------------------------------- 476 (1133)
T KOG1943|consen 477 -------------------------------------------------------------------------------- 476 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000146 626 SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVI 703 (2052)
Q Consensus 626 ~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~~~~~~Lv~~L~~~pg~~DsN~qV~~~~L 703 (2052)
+..++|..-.-|-+|--.+++.+...++. +...-..+.|+.. .-.+...
T Consensus 477 --------------------~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy 527 (1133)
T KOG1943|consen 477 --------------------IVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCY 527 (1133)
T ss_pred --------------------HHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHH
Confidence 11122222222333333333222221110 0000011122210 0122222
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHh-hh--chhhhHHHHHHHHHHHhhhC---hhHHHHHHHHHHhhCCCHHHHHHH
Q 000146 704 EVINYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAVG---PGFIFERLYKIMKDHKNPKVLSEG 777 (2052)
Q Consensus 704 e~l~~l~~~~~~~~~~~~~~il~~LveK-lg--d~K~r~~a~e~L~~l~E~~~---~~~Vl~~L~~~l~~~KnpKv~~e~ 777 (2052)
..+...+..++. +...++..++.+ +- |.++|+.+..+|..+....+ .++++..+++.. ..+++-.|.++
T Consensus 528 ~~l~~~ia~~~~----y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 528 LDLCVSIAEFSG----YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGV 602 (1133)
T ss_pred HHHhHHHHhhhh----HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhh
Confidence 223332333222 233445555543 43 47889999999988776433 456777777774 67888889888
Q ss_pred HHHHHHHHHHh-CCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHH--HHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 778 ILWMVSAVEDF-GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLG--ALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 778 L~~L~~~i~~f-G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~--~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
....++++..+ +...+........+. |+ ..-+..+. ..|+-+| .+. .-...+.|+.
T Consensus 603 ~la~~ev~~~~~~l~~~~~~l~e~~i~--~l--------~~ii~~~~~~~~~rg~~-~lm------r~~~~~~Ie~---- 661 (1133)
T KOG1943|consen 603 FLAAGEVIGALRKLEPVIKGLDENRIA--GL--------LSIIPPICDRYFYRGQG-TLM------RQATLKFIEQ---- 661 (1133)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhh--hh--------hhhccHHHHHHhccchH-HHH------HHHHHHHHHH----
Confidence 88888877532 111000000000000 00 00111122 2233333 111 0111122221
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG 933 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~ 933 (2052)
+..... | ..+...+. ....-+.+.+.+.+ .+|.++..++.+++.. ....+. ..
T Consensus 662 ~s~s~~----~-----------------~~~~~v~e-~~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~ 715 (1133)
T KOG1943|consen 662 LSLSKD----R-----------------LFQDFVIE-NWQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEE 715 (1133)
T ss_pred hhhccc----h-----------------hHHHHHHH-HHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhh
Confidence 111000 0 00001111 00011222334566 8999999999999863 233222 12
Q ss_pred -hHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--
Q 000146 934 -ELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH-- 1007 (2052)
Q Consensus 934 -eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~-- 1007 (2052)
+++.....++ ++++..++..-.-+++.+...+ +.-+ -+.+...++..+- |.-+.-|+....+++.++...+
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~ 792 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSL 792 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3544444444 5557777765544444443221 1111 2233444444443 3366778888888888887765
Q ss_pred -----chhhHHHHHHHHhc------CccChhHHHHHHHHHHHHhccCCCCCc-hhhhHHHHHhh----cCCCCHHHHHHH
Q 000146 1008 -----LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIA----MTDKSSDVRKAA 1071 (2052)
Q Consensus 1008 -----l~~ll~~l~~~L~~------~k~np~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~----L~D~~~dVRkaA 1071 (2052)
..++++.|..+|.+ +.+...+|..++..|...+.....++- ..+.+.+++.+ --|+-...|.-|
T Consensus 793 ~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a 872 (1133)
T KOG1943|consen 793 LFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELA 872 (1133)
T ss_pred hccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777763 112345888888888776665553221 23445554443 356666678888
Q ss_pred HHHHHHHHHH
Q 000146 1072 EACIVEILRA 1081 (2052)
Q Consensus 1072 ~~~L~~l~~~ 1081 (2052)
..|+..+..|
T Consensus 873 ~~~~~qi~~~ 882 (1133)
T KOG1943|consen 873 ASALNQIVVH 882 (1133)
T ss_pred HHHHhceeec
Confidence 8888777766
No 51
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.25 E-value=0.0095 Score=79.86 Aligned_cols=290 Identities=15% Similarity=0.210 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh----hHHHHHHHH
Q 000146 653 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK----CVVLCLLGI 728 (2052)
Q Consensus 653 ~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~----~~~~il~~L 728 (2052)
.-..|++|++-|..+-.-.+.. ...+-++.|+.. -|.|+..+|+..++++|..++....++... ..+.++|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 4556889998887654443222 245666777654 389999999999999999988876555433 235566766
Q ss_pred HHhhhch---hhhHHHHHHHHHHHhhhC-hhHHHHHHHH--HHhhCCCHH----HH-HHHHHHHHHHHHHhCCCCCChHh
Q 000146 729 SERVADI---KTRAHAMKCLTTFSEAVG-PGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 729 veKlgd~---K~r~~a~e~L~~l~E~~~-~~~Vl~~L~~--~l~~~KnpK----v~-~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
-.-+-|. .+|-.-..+|-.+|+... .. .+.+.+. ++.+..|.. -. ..-++.|. ..
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFl-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-------------~~ 578 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFL-ELTQELRQAGMLNDPNSETAPEQNYNTELQALH-------------HT 578 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHH-HHHHHHHhcccccCcccccccccccchHHHHHH-------------HH
Confidence 6656662 356555556666655311 10 0111111 111222211 00 00011111 12
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
+-+.+..+ |.++.+.||.+-.+-++.|+.+.|.. + +
T Consensus 579 V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k------------s-------- 614 (1431)
T KOG1240|consen 579 VEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K------------S-------- 614 (1431)
T ss_pred HHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c------------c--------
Confidence 22334556 78888999999999999999988732 0 0
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh-HHHHHHhhhccchHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMATLI 956 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e-L~~aL~~rL~DsN~~V~~~Al~ 956 (2052)
.| + |.+-|+.-+.|++|.-|-.-.+.|-.+. -.+......| +++.|.+-|.|...-|+..||.
T Consensus 615 ---ND------~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~ 678 (1431)
T KOG1240|consen 615 ---ND------V---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALG 678 (1431)
T ss_pred ---cc------c---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 11 1 5567788899999999999888876554 2344432233 5677788999999999999999
Q ss_pred HHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000146 957 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 1020 (2052)
Q Consensus 957 ~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~ 1020 (2052)
++..|++. |--=++++..++..++-.|...+..||.++...|-++.+.++- -.++|.|-++|.
T Consensus 679 ~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 679 SLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999864 3223467888888889999999999999999999999988762 346777777775
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.45 Score=62.20 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=121.9
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.++..+|.+.+=.++.||++.+.+++... .|.+++++.+.|-+.-.|+.|....---+=..|+.-- ..+-.-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp----dLALLS 109 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP----DLALLS 109 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC----Cceeee
Confidence 46677788888999999999998866321 3578889998888888888888777555555554211 122333
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH----HHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK----TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~----~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+..+-+.++|+++-+|..|..+|..| -+.-|.|.++ .+..+-.|.||..++..+..+..-.+. +.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-----~k 178 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-----QK 178 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-----hH
Confidence 55666779999999998876666544 3444555444 455577899999999999887653321 22
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.+++..+.++|.|..+-|-.+|.-||..++
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 578889999999999999999988887665
No 53
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.14 Score=65.46 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=126.2
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 403 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k---i~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 403 (2052)
....++.|.+=..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556777788889999999999875333 332222356777777776 88899999999999999998765433332
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHH------HHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000146 404 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 475 (2052)
Q Consensus 404 -~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~l------l~~l~~~L~~Knp-~vR~~~l~~L~~~l~~~~~ 475 (2052)
...+|.++..+......|++.+.-||..++.. +..+.++ ++.++..+....+ .....+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 25678889999999999999999999999987 4444443 4556666655544 3333444444554444323
Q ss_pred hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 476 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 476 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
..-...+..++|+|..++.+.|++|..-|+-++.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2223556889999999999999999855544443
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.99 E-value=0.0033 Score=63.33 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC
Q 000146 908 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 987 (2052)
Q Consensus 908 ~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~ 987 (2052)
.|+.||-.|..+...-.+.+... +.+|++.+...+.|.+..|+..||+.+..+++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876433443333 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000146 988 KKHMRECTLTVLDAW 1002 (2052)
Q Consensus 988 k~~VR~aa~~aL~~i 1002 (2052)
.+.||.+| +.|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 455543
No 55
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.97 E-value=3.9 Score=57.67 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHHHHhhh-------ccc----hHHHHHHHHHHHHHHH
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRL-------YDS----NKNLVMATLITLGAVA 962 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-~~~eL~~aL~~rL-------~Ds----N~~V~~~Al~~l~~la 962 (2052)
..|+..+-..+..+=.+++-+|..+... +.... ...+++..+.++| .+. |.....-.+-++|.++
T Consensus 1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k---~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~ 1200 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATK---RTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLS 1200 (1692)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhh---hccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHH
Confidence 3444444444555556677777777642 11111 1133343333333 233 5556677888999999
Q ss_pred H--------HhChhhHHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHhcC-c---hhhHHHHHHHHhcCccCh
Q 000146 963 S--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAAVH-L---DKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 963 ~--------alg~~~~~~~~~llp~ll~~l----~D~k~~VR~aa~~aL~~i~~~~~-l---~~ll~~l~~~L~~~k~np 1026 (2052)
. .-|+.+.+....+--.++.+| ++.+..+|..|..+|+.++-.-+ + ..+...+...|.+.+ ++
T Consensus 1201 Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n-~~ 1279 (1692)
T KOG1020|consen 1201 RYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDN-SD 1279 (1692)
T ss_pred HhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhc-cc
Confidence 7 345566666666666666665 47779999999999998775432 2 345556666676554 33
Q ss_pred hH-HHHHHHHHHHHhc
Q 000146 1027 EG-RKDLFDWLSKQLT 1041 (2052)
Q Consensus 1027 ~~-R~~~l~~L~~~l~ 1041 (2052)
.. |..++.-+..+|.
T Consensus 1280 ~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1280 IKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44 7777776666554
No 56
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.86 E-value=0.24 Score=63.89 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=139.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
...++-.|..+++.+..++ ||......+.+++..+...+ ..........+++++..+++++=-.-.+....++..+
T Consensus 200 ~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L 276 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKL 276 (415)
T ss_pred cCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 4445899999999999887 45334344567777777777 6677888899999999999998555567788899999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1041 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~--------~-----------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~ 1041 (2052)
++.|.| +.+...+..++..++... + ...++|.+.+...+. +...|...+..|...+.
T Consensus 277 ~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 277 LELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHh
Confidence 999999 667888888888887652 1 233445555555543 23467778888888888
Q ss_pred cCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000146 1042 GLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1042 ~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L 1094 (2052)
+.+.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.+++..|
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 87763 566777777999998888999999999999988877 56777776554
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.83 E-value=0.02 Score=64.78 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000146 905 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 984 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l 984 (2052)
++.+|..++..+++++..- |+......+.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 343456778889999999999999999999999854 44444566778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------ccChhHHHHHHHHHHHHhcc
Q 000146 985 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1042 (2052)
Q Consensus 985 ~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~-------k~np~~R~~~l~~L~~~l~~ 1042 (2052)
.|.++.||+.|..++..+....+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 345556666666532 23456788899998887764
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.80 E-value=0.088 Score=71.18 Aligned_cols=274 Identities=15% Similarity=0.081 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHHhhhChhHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHh---CCCC--CChHhHHHHHHhhCCC
Q 000146 737 TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVSH--LKLKDLIDFCKDTGLQ 808 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~f---G~~~--l~~k~li~~l~~~gL~ 808 (2052)
.|-.|.+.|..++...+-+..+++++++. ..+..++||..++..|++++... .... +-++-|++.+..+ +.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-LN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-hc
Confidence 57778888888888877666666666653 46889999999999999998532 2221 2235567777777 77
Q ss_pred C-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCC---CCCCCCccccccccccCCCCCCCCCCC
Q 000146 809 S-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 809 ~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~---~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
+ .+..||-+-..++..|.... ..|+ +.-|+.... ..+-..+.. ..... .
T Consensus 518 d~~~~~vRiayAsnla~LA~tA----~rFl-----------e~~q~~~~~g~~n~~nset~~----------~~~~~--~ 570 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTA----YRFL-----------ELTQELRQAGMLNDPNSETAP----------EQNYN--T 570 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHH----HHHH-----------HHHHHHHhcccccCccccccc----------ccccc--h
Confidence 7 67789999888887776532 1222 222221100 000000000 00000 0
Q ss_pred CcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 964 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~a 964 (2052)
...++..-+...+...+.|..--+|..-|+.|..++.-- .+.+.+ .=|+.-|..-|+|....++..=.+.|..++--
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 011111112233445578888888999999988888632 233433 23677888889999999999888888888777
Q ss_pred hChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 965 lg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-----l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.|.. ..-+.++|-+.+.|.|.-+.|...|..||..+++.-- +..++..+.+.|-++ |.-+|..++.++...
T Consensus 648 VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 648 VGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAI 723 (1431)
T ss_pred Eeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHH
Confidence 7765 2345688999999999999999999999999998543 345666777888888 678999999999987
Q ss_pred hccCCC
Q 000146 1040 LTGLSG 1045 (2052)
Q Consensus 1040 l~~~~~ 1045 (2052)
...+..
T Consensus 724 ~~~ls~ 729 (1431)
T KOG1240|consen 724 ARQLSA 729 (1431)
T ss_pred Hhhhhh
Confidence 766654
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=5.2 Score=56.46 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000146 394 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 394 ~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~ 471 (2052)
-+...|++|+..+ +.-+++....+|.-|..||..++... -...+++...+..-+.+....||..++..+++++-
T Consensus 809 ~f~~sfD~yLk~I----l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLI----LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHHhhHHHHHHH----HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 4556677775544 44567888888888888888888872 13457888888888888888889888888888887
Q ss_pred hcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh-----hHHHhHhhcc---HHHHHHHHHHHhc
Q 000146 472 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR-----PLERSIEKLD---DVRRNKLSEMIAG 541 (2052)
Q Consensus 472 ~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~-----~~~~~l~~Ld---~~k~kkI~e~~~~ 541 (2052)
..+.- . ..+-..+...+.|+.-.||+.+.+-+-.++.-..+= ...+++.... +.-++.+.+.+.+
T Consensus 885 ~~~e~-~----~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 885 SIPEL-I----FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred ccHHH-H----HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 66543 3 344456777888888888888888888888776631 2344444442 1245555665544
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.64 E-value=0.11 Score=66.78 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=147.2
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 334 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
...++-.|..+++.+..+++. ...+ .+.+++..+...+ ..........++..+.-+++||=-+-.+....++..|+
T Consensus 200 ~~~~~~~~~~~~~~la~LvNK--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVNK--WPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 445699999999998888753 3333 4677777777777 46666678888899999999876555688889999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-C----CC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKA-G-C----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~-~-~----~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 474 (2052)
+.+.+ +.+...+..++..++.. . + .+ +..++|.+.++.+..+...|...+..|..++++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 56677777888777764 1 0 01 36677778888777676799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 475 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 475 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+..+..+++.++|.+.++|.=++++||.++.+++..+..--. ..+.++++.|
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sL 407 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSL 407 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHH
Confidence 998889999999999999999999999999999987775552 3345555544
No 61
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.17 Score=64.71 Aligned_cols=361 Identities=17% Similarity=0.147 Sum_probs=208.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+..+..+.+.+-..+..+...+.+++... ++.|..-.-..+++.|...| .+.+..++..|.-+|..||.+--..-..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34566667777777999999999999732 12121111124556666666 47789999999999999997654443333
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~~-~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
+. ..+|.++.++..+...|++-|.-+|..++...+ + ...++.++..+.....-...| -+.|...-|...+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcCC
Confidence 33 367889999999999999999999998886543 1 123344555554331002333 3456555555443
Q ss_pred -CCCc---hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCC
Q 000146 1045 -GFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1120 (2052)
Q Consensus 1045 -~~~~---~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~ 1120 (2052)
+.+. +..+++.|..+|.+.+.+|..-|.-++..+.....+ .+. .+ ++......+.+.+........
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq-~v--i~~gvv~~LV~lL~~~~~~v~------ 296 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQ-MV--IDAGVVPRLVDLLGHSSPKVV------ 296 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHH-HH--HHccchHHHHHHHcCCCcccc------
Confidence 3333 456667788899999999998777666655433332 211 11 222333444555543322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhcc---------ccCC-CchHHHhhhhhcccc
Q 000146 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRFK 1190 (2052)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~k~~R~~~~~~k~~ 1190 (2052)
.|+-|+.. -+.+ | .+.+++.++ .+.. +.++. +|. --=|.
T Consensus 297 ---------------~PaLRaiG--NIvt-G-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~-ikk-EAcW~ 345 (514)
T KOG0166|consen 297 ---------------TPALRAIG--NIVT-G-----------SDEQTQVVINSGALPVLSNLLSSSPKES-IKK-EACWT 345 (514)
T ss_pred ---------------cHHHhhcc--ceee-c-----------cHHHHHHHHhcChHHHHHHHhccCcchh-HHH-HHHHH
Confidence 00000000 0000 0 011222111 1111 11110 111 11143
Q ss_pred cc---CCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHH--HHHHHHHHHHhhcCccHH
Q 000146 1191 FE---DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTT 1265 (2052)
Q Consensus 1191 f~---~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~--lDlllk~l~lr~~dtN~~ 1265 (2052)
.. ....+++ +.=|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++
T Consensus 346 iSNItAG~~~qi---qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ 422 (514)
T KOG0166|consen 346 ISNITAGNQEQI---QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK 422 (514)
T ss_pred HHHhhcCCHHHH---HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH
Confidence 32 2344444 444666677889999999999999999999998887776554442 224677777777778999
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCC
Q 000146 1266 CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1306 (2052)
Q Consensus 1266 vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd 1306 (2052)
++..+||.|..++..-.... .+.. -.+.-+++..|-
T Consensus 423 ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 99999999998765544322 1110 344555666654
No 62
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1.2 Score=58.26 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=78.1
Q ss_pred HHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHh
Q 000146 1213 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1292 (2052)
Q Consensus 1213 ~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~E 1292 (2052)
+++..|-+.|+.-|-++++...+...+.. ..-+..++..++.+||..-.-+.-+|=+.|+..+...--.|.++
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~- 393 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV- 393 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-
Confidence 67788889999999999998877765433 22244566677888766544455555556666666666678887
Q ss_pred HHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc
Q 000146 1293 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1328 (2052)
Q Consensus 1293 a~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~ 1328 (2052)
|+..+|.|++-+||..+..-..|-..++-....||.
T Consensus 394 aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 394 AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 888999999999998887766666666655555553
No 63
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.49 E-value=0.52 Score=58.99 Aligned_cols=157 Identities=21% Similarity=0.176 Sum_probs=114.5
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 983 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~ 983 (2052)
..|..|..+++.+..+-. .+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 347788888888865532 567888999999999999999999888777443 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCC
Q 000146 984 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1063 (2052)
Q Consensus 984 l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1063 (2052)
+.|....||.++..++.. .|...-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~----~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGE----IGDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhcc----cCcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 999999999998888875 45566677778888755 3455555544443 112344566678888999
Q ss_pred CHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000146 1064 SSDVRKAAEACIVEILRAGGQETIEKNLKD 1093 (2052)
Q Consensus 1064 ~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~ 1093 (2052)
+..+|..+...+..+...............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 317 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLALED 317 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHhcC
Confidence 999999998888777666555544444333
No 64
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.44 E-value=3.6 Score=52.21 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=77.6
Q ss_pred HHHHHHHHHh--hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHhhcCCh-HH
Q 000146 386 QAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED---VKTSVKNKVP-LV 458 (2052)
Q Consensus 386 ~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~---l~~~L~~Knp-~v 458 (2052)
.+|..|+.-+ |+.| +..+..++-++++.|..|.+..|+++--|+..+..- + ++++-. |..-++.+.| .+
T Consensus 43 ~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~~~~ 118 (898)
T COG5240 43 KLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVPDDV 118 (898)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCcccc
Confidence 4444455433 5668 678999999999999999999999998888887653 1 344433 3344456667 88
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 459 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
|-.++.-|.+++..... ..+-..+..++-|+.+.+|.+|.
T Consensus 119 kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 119 KPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred ccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 88888888888765432 23344566778899999988874
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.33 E-value=0.0071 Score=54.22 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000146 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 511 (2052)
|.+|..++..|.++.+ .....+.++++.++|.|..+|.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999998444 344456678899999999999999999999999999754
No 66
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=6.7 Score=52.22 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHHhhhcchh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 000146 387 AIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 465 (2052)
Q Consensus 387 ~l~~La~~L~~~f~~-~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~ 465 (2052)
=+|+||-.|-=+=.. .+-.+...|-+-+...++.|+-.|..++..++.. .-..++.+++..-++|.+|-+|.-++..
T Consensus 88 RiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~Lc 165 (866)
T KOG1062|consen 88 RIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAALC 165 (866)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHHH
Confidence 355666544211111 2333444555556777888887777777777643 3457889999999999999999999999
Q ss_pred HHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 466 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 466 L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
..+++...+. ....+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 166 a~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 166 AVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 9999886543 246789999999999999998888887777776644
No 67
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.32 E-value=1 Score=54.08 Aligned_cols=240 Identities=15% Similarity=0.181 Sum_probs=164.2
Q ss_pred hhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccc
Q 000146 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 290 (2052)
Q Consensus 211 ~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~ 290 (2052)
.|-..+.+.|..+|+.|+.++.++...+.++ .|...+..-|-+.|-
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~~-------------------------- 48 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFFC-------------------------- 48 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHHH--------------------------
Confidence 4556677889999999999999988887432 244455544444332
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 000146 291 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 370 (2052)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~ 370 (2052)
+++ .+|.-=..++..+.+|++.+.+..+....+++.+.
T Consensus 49 ----------------------------------------~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 49 ----------------------------------------SRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLF 86 (262)
T ss_pred ----------------------------------------HHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHH
Confidence 122 12333345677777777666666566666666665
Q ss_pred HHhc-Cc-CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000146 371 KLIT-DV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 447 (2052)
Q Consensus 371 k~l~-D~-N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l 447 (2052)
+.+. -+ -...+....+.+..+....+.....+...++..++..+ +||.|.-.--+...+..+... ..+....+++
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~l 164 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDL 164 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHH
Confidence 5433 22 22356666777777777665555556677888888877 677798877788888888776 4556777777
Q ss_pred HHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 448 KTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 448 ~~~L~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+.+. .+| | -.|.+...-|..|+..++ .+ -+..+|.+..-|..+.+.|+.-+.+++......+
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--~f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--LF---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--hh---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 65442 222 2 467777788888887543 22 3568899999999999999999999999999999
Q ss_pred CChhHHHhHhhccHHHHH
Q 000146 516 GMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 516 Ge~~~~~~l~~Ld~~k~k 533 (2052)
|...+.+++..+=+.-|.
T Consensus 240 ~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 240 GADSLSPHWSTIWNALKF 257 (262)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 988888888877554443
No 68
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.08 Score=65.92 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=135.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 897 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
+.....+..|+.|....-.+.++.. .+.++. ..+++++..|..+..|++.+++..|+++|+.++..+......|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 3445566789999999888888875 234442 2368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCccChhHHHHHHHHHHHHhccCCCC-
Q 000146 976 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF- 1046 (2052)
Q Consensus 976 llp~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l~~ll~~-------l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~- 1046 (2052)
++-.|+..|-| .+..|.=.+..||..+.+......+-++ +...+.+. +++.|...+-.... |..+...
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~~ 376 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGGG 376 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCCC
Confidence 99888877755 5567887888888888877654444332 22334444 57788776554442 2222221
Q ss_pred --Cch----hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000146 1047 --PDA----AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1092 (2052)
Q Consensus 1047 --~~~----~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~ 1092 (2052)
... ..-..|++-.|+|+++-|-.|.+..+....-.++-+.+..++.
T Consensus 377 ~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 377 WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 122 2233467778999999888887777766666666555555544
No 69
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.13 Score=65.79 Aligned_cols=287 Identities=16% Similarity=0.180 Sum_probs=168.9
Q ss_pred HHHhhh--chhhhHHHHHHHHHHHhhhChh-HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh-CCCC---CChH---h
Q 000146 728 ISERVA--DIKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF-GVSH---LKLK---D 797 (2052)
Q Consensus 728 LveKlg--d~K~r~~a~e~L~~l~E~~~~~-~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~f-G~~~---l~~k---~ 797 (2052)
|+.-.+ |.++|..|.+.|+++.|.+... ....+..+.+ .+-+-.||.++++.+.-.-+.+ +... -+.+ .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~ 281 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA 281 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH
Confidence 444443 3678999999999999955543 3455555654 6777889999887766555544 2111 1111 1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc----CCCCCCCCCccccccc---
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK----NPFEGTVVPKKTVRAS--- 870 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK----~~~~~~p~p~r~~r~~--- 870 (2052)
....+-.. +.|..-.||-.|.+++|.+-..-. .| +.++|++..-. -.+. .-.|.+...+.
T Consensus 282 aF~~vC~~-v~D~sl~VRV~AaK~lG~~~~vSe----e~-------i~QTLdKKlms~lRRkr~a-hkrpk~l~s~GewS 348 (823)
T KOG2259|consen 282 AFSSVCRA-VRDRSLSVRVEAAKALGEFEQVSE----EI-------IQQTLDKKLMSRLRRKRTA-HKRPKALYSSGEWS 348 (823)
T ss_pred HHHHHHHH-HhcCceeeeehHHHHhchHHHhHH----HH-------HHHHHHHHHhhhhhhhhhc-ccchHHHHhcCCcc
Confidence 22222233 778888899999999988764322 11 23444433211 0000 00011110000
Q ss_pred ccc---CCCCCCCCCCCCccccc-ccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc
Q 000146 871 EST---SSVSSGGSDGLPREDIS-GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 946 (2052)
Q Consensus 871 ~~~---~~~~~~~~d~lpr~dIs-~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds 946 (2052)
..+ .+++.. .+....+.|. +---..|+.+++|.=+.+|..|+..+..+.... |.--..-+..|...|+|-
T Consensus 349 sGk~~~advpse-e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-----P~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSE-EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-----PGFAVRALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchh-hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhccH
Confidence 000 000000 0001111110 001246778888888999999999999988632 232256788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCc
Q 000146 947 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAK 1023 (2052)
Q Consensus 947 N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~k 1023 (2052)
-..|+..|+..+..|+..+ ..-+..++.++..|-|....||++..+.|...- ... ++..+..+...|. +
T Consensus 423 ~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m~v~~lL~~L~--k 494 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDMCVAHLLKNLG--K 494 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhh--h
Confidence 9999999999999999774 334667899999999999999999877665421 111 2223333333343 2
Q ss_pred cChhHHHHHHHHHHHHhccC
Q 000146 1024 LGAEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 1024 ~np~~R~~~l~~L~~~l~~~ 1043 (2052)
-|+-|-+++..|.+.=+++
T Consensus 495 -yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 495 -YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred -CCCCcHHHHHHHHHHhccC
Confidence 2666778888877654443
No 70
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.4 Score=59.18 Aligned_cols=305 Identities=18% Similarity=0.185 Sum_probs=151.3
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhHHHH
Q 000146 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKK 98 (2052)
Q Consensus 19 rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k 98 (2052)
+..|-.=|+|..|.--+..+.+.+. +. .|.-| .+....|+. ++. -+.++.-
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~--~~-~~ygy--w~~~~pd~~-------~~g-----------------~p~l~~l 54 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIE--KK-VLYGY--WSAFIPDTP-------ELG-----------------SPSLMTL 54 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhh--hh-hhhce--eeeecCCCC-------CCC-----------------CceeeEE
Confidence 3456667899988877776665432 22 24444 222233311 111 1445555
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-----RPKTVEKAQAVFMLWVELEAVDVFLDVME 173 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-----r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll 173 (2052)
.+.|.|+...--||+.+.+++..... +-....+.-+ -.+.. -..++ .+..|++...|.+
T Consensus 55 ~lkd~~~~~ra~alqv~~~~l~gsk~-fls~a~~~~~----~~ftpf~v~~a~si~-~~~r~l~~~l~~e---------- 118 (728)
T KOG4535|consen 55 TLKDPSPKTRACALQVLSAILEGSKQ-FLSVAEDTSD----HAFTPFSVMIACSIR-ELHRCLLLALVAE---------- 118 (728)
T ss_pred ecCCCChhHHHHHHHHHHHHHHhhHH-HHHHHhccCC----cCCCchHHHHHHHHH-HHHHHHHHHHHHh----------
Confidence 78999999999999999888765433 1111110000 00000 00111 1233333333332
Q ss_pred HHhhccChhhHHHHHHHHHHHHHHhCCCCcC---hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 174 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 174 ~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~---~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
-.|.++..|+.||..++.+-....+. +-.+..++.++..|.|++||-.+..++..|..--. -
T Consensus 119 -----~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~----------~ 183 (728)
T KOG4535|consen 119 -----SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA----------P 183 (728)
T ss_pred -----cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC----------C
Confidence 34667778888888777653333222 33566778899999999999999888766543221 1
Q ss_pred ChHHHHHHHHHHHHh--ccCC-CCCCccchhhhhHhhhhcccccCCCCCCCCCC--CCCCCCCCCCCCCCCcccccCcCc
Q 000146 251 MRDTMKKELEVELVN--VSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSEES--TADVPPEIDEYELVDPVDILTPLE 325 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~--~~~~-~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iD~~dl~~~vdIl~kl~ 325 (2052)
++++|. .|...... ..-+ ..|+... + +.. ++++.+. ..++...-.|--++.++--..-++
T Consensus 184 ~pei~~-~~~~~~s~~n~~~~h~s~~~~~---~--~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 184 LPEVQL-LLQQPCSSSNSATPHLSPPDWW---K--KLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred CHHHHH-HhcCCCccccccCCCCCChHHH---H--hcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 222222 12100000 0000 0011000 0 000 0000000 000001111222233322112222
Q ss_pred cchhhh------hccc--CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh
Q 000146 326 KSGFWE------GVKA--TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 397 (2052)
Q Consensus 326 ~~~f~~------~l~s--~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~ 397 (2052)
+.+-+. .+++ .---.|.|+++-|..++..-.+...-+.++.+.+.+.+.|.-+.+-.-+..|+..+..++..
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~ 328 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ 328 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 222221 1111 12346888888887766322222234567778888888899999999999999999998874
Q ss_pred c
Q 000146 398 H 398 (2052)
Q Consensus 398 ~ 398 (2052)
.
T Consensus 329 ~ 329 (728)
T KOG4535|consen 329 Q 329 (728)
T ss_pred h
Confidence 4
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.11 E-value=0.039 Score=54.30 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 407 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 407 lp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.+...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889989 89999999887777662 34568899999999999999999999999874 1 1557
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHH
Q 000146 486 VPICMECLND-GTPEVRDAAFSVLA 509 (2052)
Q Consensus 486 ~p~l~k~l~D-s~~~VR~aA~~~l~ 509 (2052)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 45677999999885
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.10 E-value=0.02 Score=56.45 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred HHHHhhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 895 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 895 ~~ll~~l-~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
+.|++.+ ++++|.+|.+++..|.++- -.++++.|...++|.|..|+..|+..|+.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 4577777 8999999999999997432 2578999999999999999999999999773 2
Q ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHH
Q 000146 974 KGVLSDILKCLGD-NKKHMRECTLTVLD 1000 (2052)
Q Consensus 974 ~~llp~ll~~l~D-~k~~VR~aa~~aL~ 1000 (2052)
+..++.+.+.+.+ ....||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5578888888876 45677999888874
No 73
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.08 E-value=0.035 Score=57.64 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----HH-HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~----l~-~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
+++.+++.+.+....++..+..++..++...... .. .+++.+...+.+.++.++..++..|.++....+.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HHH
Confidence 7888999999999999999999999988641000 12 66778888899999999999999999987654322 222
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ..+++.+.+++++.+.++|..+..+++.+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 348999999999999999999999998764
No 74
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.06 E-value=0.14 Score=58.07 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHhhcCC
Q 000146 377 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 455 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~-ll~~l~~~L~~Kn 455 (2052)
|+.|+..++.+++.|+.... ..+...+|.+...+.|..+.||..+..+|..++..+...+.. ++..++..+.+.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 56788999999999987554 456666889999999999999999999999998864444444 4478888899999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000146 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 486 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 486 (2052)
+.||..+..++..+.....+..+..++.+++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999888744444533333333
No 75
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.24 Score=61.87 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=140.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.+.+.+.+.+|+.|....-.+..+...+.+.. +..++++-.+.....|++..++..||.+|+.++.++-...-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 45566788999999988887777765444443 67889999999999999999999999999999999777777788888
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHh-cCCCHHHHH----HHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKA-GCLNLVDVV----EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 477 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~-~~~~l~~ll----~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---~ 477 (2052)
+-+++..+-|. +..|.=.+..+|..+... ....+..++ -.+-...++-++++|..+...++.+..-+... .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 88888777654 466666667777766654 112222222 22334556889999999998888876654322 1
Q ss_pred HHH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHH
Q 000146 478 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 478 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
|.. ..+.+.| +.-.++|++|.|-.|....+-+..--++-+....++++.-+..+..+.+++
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 221 1223333 344579999999666666554444434433345555533233333455544
No 76
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.96 E-value=0.23 Score=61.11 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=122.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC---CChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhC--hhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVE 970 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~---~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg--~~~~ 970 (2052)
+.+..+.+++-+.|.+||+.+..++.. ..... ..+..|+..+.+.++-....=...|+++++.++-.+| ..-.
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~--~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS--RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 566778899999999999999999973 21211 1246778888888865555667889999999999987 6667
Q ss_pred HhhhHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chhh------HHHHHHH--Hh-cCc-------cChhHHH
Q 000146 971 KSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDKM------VPYVTTA--LT-DAK-------LGAEGRK 1030 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~--~VR~aa~~aL~~i~~~~~--l~~l------l~~l~~~--L~-~~k-------~np~~R~ 1030 (2052)
...+.+.|.+...+.|... .+|.++..||..+.-.++ .+.+ +..++.. ++ +++ .++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 7888899999998888654 567888888876655433 2222 2222221 11 111 0123443
Q ss_pred H-HHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1031 D-LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1031 ~-~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
. +-.| .-++...+. ...+...++.+...|+..+.+||.+|-++|..++....
T Consensus 205 aAL~aW-~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAW-ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 3334 223333332 11233455558888999999999999999998877666
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.94 E-value=0.014 Score=60.58 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=83.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
+.+.+.+.+.+|..|..++..|..+.... +....... .++++.|...|.|.|..|+..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 46777888889999999999999988531 11111111 36788888899999999999999999999976544444444
Q ss_pred h-HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000146 974 K-GVLSDILKCLGDNKKHMRECTLTVLDAWL 1003 (2052)
Q Consensus 974 ~-~llp~ll~~l~D~k~~VR~aa~~aL~~i~ 1003 (2052)
. .+++.+++.+.+.+..++..+..+|..++
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 48999999999999999999998888764
No 78
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.82 E-value=0.064 Score=60.35 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000146 379 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 436 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkK~~V~~aa~~aL~ai~~~~--------- 436 (2052)
+|+..|+.|++.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999984 456788888888765 32 347999999999999999999761
Q ss_pred ----C---CC----HHHHHHH----HHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHhhcCCChH
Q 000146 437 ----C---LN----LVDVVED----VKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 437 ----~---~~----l~~ll~~----l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
. ++ +..++-. +..+++ .+++.+-.+.++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 2333333 344555 567888889999999999887755554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000146 500 VRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 500 VR~aA~~~l~~l~~~~G 516 (2052)
||-++.-|++.+..+.+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.014 Score=45.91 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
++|.+.++++|++++||.+|..|++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.1 Score=59.18 Aligned_cols=324 Identities=18% Similarity=0.213 Sum_probs=192.7
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhh--hhhhH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADA-DAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE--AVDVF 168 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~-~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~--~~~~v 168 (2052)
.+.++.++.|+|+.|-..|+.+|....+.-.. ........++..++++ +. =-.--+-.-++++..|+--+ ..+.+
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a-l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i 240 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA-LNECTEWGQIFILDCLAEYVPKDSREAEDI 240 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH-HHHhhhhhHHHHHHHHHhcCCCCchhHHHH
Confidence 67778889999999999999999887766432 1111222333444433 21 01112223444444444322 23578
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHHhCC-CCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHH
Q 000146 169 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL 247 (2052)
Q Consensus 169 ~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~-~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L 247 (2052)
++.+.+.+.|-|+-++.+++..+...+..+-. ...-.+.+-+.+..+++... .+- --.+++++ .+
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~q-------yvaLrNi~------li 306 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQ-------YVALRNIN------LI 306 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhh-------HHHHhhHH------HH
Confidence 88889999999999999999998888776644 00012222233333332211 111 11122221 01
Q ss_pred HhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccc
Q 000146 248 FEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKS 327 (2052)
Q Consensus 248 ~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~ 327 (2052)
+...+.....++...|-+. .||
T Consensus 307 l~~~p~~~~~~~~~Ff~ky------------------------------------------------nDP---------- 328 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKY------------------------------------------------NDP---------- 328 (734)
T ss_pred HHhChHHHHhHhHeeeeec------------------------------------------------CCc----------
Confidence 1111111111221111110 111
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
.| .+.+-++.+..+++. .+..++...|+..-.+..+..+..|++|||.+|...... ..++
T Consensus 329 -iY---------vK~eKleil~~la~~-----~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv 388 (734)
T KOG1061|consen 329 -IY---------VKLEKLEILIELAND-----ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCV 388 (734)
T ss_pred -hh---------hHHHHHHHHHHHhhH-----hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhH
Confidence 11 123445666665532 235567788888888999999999999999999887654 5688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 486 (2052)
..||+.+.-+...|++.+...+..++.+..-..+.++..+...+. -.+|..|......++...+..+. ...++
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL 462 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELL 462 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHH
Confidence 999999988888888888899999998822234667777766555 34688886555445444433222 25677
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
..+.+.+.|...+| ..+.+.+.+++|+.+
T Consensus 463 ~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 463 ESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred HHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 77888888888887 567777778877744
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.63 E-value=0.067 Score=59.74 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=98.3
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHH---HHHhChh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 968 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~l---a~alg~~ 968 (2052)
+.+-|++++...+---|.-|.+.+.+++.. +..+|.|-. .+|+..|+.-|+..|..|...+|++|..| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346788999888777788889999999886 666777764 89999999999999999999999999999 7788999
Q ss_pred hHHhhhHHHHHHH----HH--hC-----CCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000146 969 VEKSSKGVLSDIL----KC--LG-----DNKKHMRECTLTVLDAWLAAVHLDKMVP 1013 (2052)
Q Consensus 969 ~~~~~~~llp~ll----~~--l~-----D~k~~VR~aa~~aL~~i~~~~~l~~ll~ 1013 (2052)
+.+|.++++|.+- .+ ++ ..++.+++-..++|..+-++.|.+.++.
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~n 173 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFIN 173 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHH
Confidence 9999999999775 11 22 2456788888889998888888665543
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=1.1 Score=58.20 Aligned_cols=263 Identities=11% Similarity=0.145 Sum_probs=144.8
Q ss_pred HHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCC
Q 000146 193 QALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARP 272 (2052)
Q Consensus 193 ~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p 272 (2052)
.-|..|+..-+ -+++-..+..|++|+-+-||..|+.++--+|-.- ++++++.+ +.|+ ++++.+- |
T Consensus 131 ~GLS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~F-prL~-----------EkLeDpD-p 195 (877)
T KOG1059|consen 131 SGLSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCF-PRLV-----------EKLEDPD-P 195 (877)
T ss_pred cccccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhH-HHHH-----------HhccCCC-c
Confidence 45567887432 3678888889999999999999998887777666 45566553 4332 2222110 0
Q ss_pred CccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc--cCChHHHHHHHHHHHH
Q 000146 273 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSERKDAVAELTK 350 (2052)
Q Consensus 273 ~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~--s~kWkeR~eaL~~L~~ 350 (2052)
.+-|... + +- .+- + -=+| .+-+.-- +.||+.+. +.+|--=+ -++-+.+
T Consensus 196 --~V~SAAV--------~-VI-CEL----A-----rKnP------knyL~LA--P~ffkllttSsNNWmLIK-iiKLF~a 245 (877)
T KOG1059|consen 196 --SVVSAAV--------S-VI-CEL----A-----RKNP------QNYLQLA--PLFYKLLVTSSNNWVLIK-LLKLFAA 245 (877)
T ss_pred --hHHHHHH--------H-HH-HHH----H-----hhCC------ccccccc--HHHHHHHhccCCCeehHH-HHHHHhh
Confidence 0000000 0 00 000 0 0011 1222222 36888774 57895321 2233333
Q ss_pred Hhc-CCCCCCCChHHHHHHHHHHhcCcC-HHHHHHHHHHHHH--HHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHH
Q 000146 351 LAS-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGN--LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLT 426 (2052)
Q Consensus 351 L~~-~~ki~~~dy~~l~~~L~k~l~D~N-~~V~~~A~~~l~~--La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~ 426 (2052)
|.- .||+-. .|+.-|...+.... -.+..++++|+-. |..|+...+ ..+..++.-|=.-+-|..++..=-+.
T Consensus 246 LtplEPRLgK----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 246 LTPLEPRLGK----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred ccccCchhhh----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHHHHHHHHhhhhhcCCccHHHHHH
Confidence 331 344332 34444444444222 2244444444322 223343333 34666677776677788888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCCh-HHHHHHH
Q 000146 427 QTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAAF 505 (2052)
Q Consensus 427 ~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~aA~ 505 (2052)
-|+.-+.......+..-.+.|+.+|.+|.+.+|..++..|.-++.. . .+.+|+..|+..+.+++. ..|+.-.
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---k----Nl~eIVk~LM~~~~~ae~t~yrdell 393 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---K----NLMEIVKTLMKHVEKAEGTNYRDELL 393 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---h----hHHHHHHHHHHHHHhccchhHHHHHH
Confidence 8888887631112333445678899999999999999999887753 2 236677777777777776 5565544
Q ss_pred HHHHHHH
Q 000146 506 SVLAAIA 512 (2052)
Q Consensus 506 ~~l~~l~ 512 (2052)
--+-.++
T Consensus 394 ~~II~iC 400 (877)
T KOG1059|consen 394 TRIISIC 400 (877)
T ss_pred HHHHHHh
Confidence 4443333
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=1.2 Score=57.96 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=106.2
Q ss_pred ccHHHHhhcCC--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhC-hh
Q 000146 893 FTPTLVKSLES--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMG-PA 968 (2052)
Q Consensus 893 i~~~ll~~l~d--~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg-~~ 968 (2052)
+.|.|++.|.+ .||- |-.|-++.. +-.-+.|..-..|+..|...+.. +-..+.-.+++++-...-.-| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 56788888744 4895 333444432 22446666656788888877743 344455555555443321222 24
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 969 ~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
-...+..++..+=..+-|+.++.+=-+..|+..++..-+ ....-+.+...|.++ ++.+|..++..+...+.+
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVsk---- 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSK---- 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhh----
Confidence 445566667777777778888888888788877776432 223344677777765 467788888777665543
Q ss_pred CchhhhHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHcCh
Q 000146 1047 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~-dVRkaA~~~L~~l~~~~G~ 1084 (2052)
..+..+++-|...+.+..+ ..|..-..-+..+...-.|
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 2456666767776666555 5555444444334333333
No 84
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.8 Score=57.11 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
|..+|.++...|++.... ...+ ..+..-+..|+.|++.+||+.|...+..+-
T Consensus 479 n~ivRaaAv~alaKfg~~---~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQ---DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcC---CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 345888888888865421 1222 334445778999999999999999887766
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=2.4 Score=56.13 Aligned_cols=374 Identities=15% Similarity=0.197 Sum_probs=200.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..++..+.+.||..|--|+..+..+ ..+...+.++.-+.+ +++|.+.-|...+--.+..+....++... ..
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l-----~v~~i~ey~~~Pl~~--~l~d~~~yvRktaa~~vakl~~~~~~~~~--~~ 159 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL-----RVDKITEYLCDPLLK--CLKDDDPYVRKTAAVCVAKLFDIDPDLVE--DS 159 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE-----eehHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHhhcCChhhcc--cc
Confidence 3456788899999999999876522 111122333333332 46777777776665444444332222111 12
Q ss_pred HHHHHHHHhhhch--hhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----hC
Q 000146 723 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVED----FG 789 (2052)
Q Consensus 723 ~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~----fG 789 (2052)
-+++.|-+-+.|. -+-..|..+|..+.|.... ..+...++.. ..+|-+|-.-.|-+ |-
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcC
Confidence 2344455555554 3556666777777775531 1233333333 23555554433322 22
Q ss_pred C-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000146 790 V-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 868 (2052)
Q Consensus 790 ~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r 868 (2052)
+ ...+...+++.+... |.|.|+.|-=++.+++..+-.++..--..++..+.|.+...+..+=+ ..+ ...|.++
T Consensus 231 p~d~~ea~~i~~r~~p~-Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e-~qy----vaLrNi~ 304 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPR-LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE-IQY----VALRNIN 304 (734)
T ss_pred CCCchhHHHHHHHhhhh-hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch-hhH----HHHhhHH
Confidence 2 233556788888877 99999999888888776555444321111222222222111111000 000 0000000
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchH
Q 000146 869 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 948 (2052)
Q Consensus 869 ~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~ 948 (2052)
- .....| .+...-..-|+-+..|.-+ +..+-++.+..++..+ ...++..-|+..-.+-+.
T Consensus 305 l----------il~~~p--~~~~~~~~~Ff~kynDPiY-vK~eKleil~~la~~~-------nl~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 305 L----------ILQKRP--EILKVEIKVFFCKYNDPIY-VKLEKLEILIELANDA-------NLAQVLAELKEYATEVDV 364 (734)
T ss_pred H----------HHHhCh--HHHHhHhHeeeeecCCchh-hHHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCH
Confidence 0 000000 0110000112222233333 3455666666666533 146788888888889999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccCh
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np 1026 (2052)
..+..|+++++.+|...-.. ..++..+++.+.-+...|.+.+...+..+.+.++ .+.+++.+...+.+= .+|
T Consensus 365 ~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl-~ep 438 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSL-QEP 438 (734)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccccccc-CCh
Confidence 99999999999998665433 5678888888888888888888888998888886 456666555544421 146
Q ss_pred hHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1069 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRk 1069 (2052)
+.|.. +-|+....... -++...++.-++....|....|+-
T Consensus 439 eak~a-miWilg~y~~~--i~~a~elL~~f~en~~dE~~~Vql 478 (734)
T KOG1061|consen 439 EAKAA-LIWILGEYAER--IENALELLESFLENFKDETAEVQL 478 (734)
T ss_pred HHHHH-HHHHHhhhhhc--cCcHHHHHHHHHhhcccchHHHHH
Confidence 66554 44554322221 123455566666666666665554
No 86
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.30 E-value=6.6 Score=49.93 Aligned_cols=312 Identities=16% Similarity=0.200 Sum_probs=184.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhc----CCCCcc-cHHHHHHHHHHHHHHHHHHc---C
Q 000146 649 LKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSE-KNVQVQQQVIEVINYLAATA---T 714 (2052)
Q Consensus 649 L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~----~pg~~D-sN~qV~~~~Le~l~~l~~~~---~ 714 (2052)
|.+.+=-.|++||..|...++..+.. ....+.+++++.. .++=++ -+..+..+++.++..++... .
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 45556667999999999888774322 1123455555432 122233 36778899999999887541 3
Q ss_pred CCchhhHHHHHHHHHHhhhchhh-hHHHHHHHHHHHh-hhChhH----HHHHHHHHH---hh-CCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCVVLCLLGISERVADIKT-RAHAMKCLTTFSE-AVGPGF----IFERLYKIM---KD-HKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~~~il~~LveKlgd~K~-r~~a~e~L~~l~E-~~~~~~----Vl~~L~~~l---~~-~KnpKv~~e~L~~L~~~ 784 (2052)
.++......++...++.+.++.. |..+...|.-+.+ .+++.+ ....++..+ .+ -++.-+..|.+..+..+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 34555555688888888877653 5555555655554 455543 233333332 22 35556788999999999
Q ss_pred HHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 785 VEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 863 (2052)
Q Consensus 785 i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p 863 (2052)
+..+...-. +...-++.+... +-++...+|..|+.+...+...+|+.- .+.+.+.+.++..-.
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~------ 225 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLE------ 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccc------
Confidence 987764311 223344444444 678899999999999999988888531 112222333221100
Q ss_pred ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-CChHHHHHHHHHHH---HHHHhccccCCC-CChhhHHHH
Q 000146 864 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVN---KILEEANKRIQP-AGTGELFGG 938 (2052)
Q Consensus 864 ~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-~~Wk~R~eale~L~---~ll~~a~~~I~~-~~~~eL~~a 938 (2052)
+. -+...+.+.+...+.+ ++++ .+++-.. .++. ++.+.. ..+.+.+..
T Consensus 226 ---------------------~~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 226 ---------------------NG-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLKV 278 (372)
T ss_pred ---------------------cc-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHHH
Confidence 00 0001122233333444 2222 2222222 2221 122222 336788888
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChh---hHHhhhHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 1003 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~---~~~~~~~llp~ll~~l~D~k-----~~VR~aa~~aL~~i~ 1003 (2052)
....++.++..++..|+.+...+.-.+..+ ..+.++.+..++...+...+ ..+|.++..++..+.
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 889999999999999999999999877654 34667778888877775322 266777766666544
No 87
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.19 E-value=0.32 Score=60.80 Aligned_cols=174 Identities=21% Similarity=0.208 Sum_probs=118.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.++..+.+.+|-+|..+...+..+= -.+.++.|...+.|.+..|+..|..+++.+- .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999998865442 2678999999999999999999998655432 24
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcc--------Ch--hHHHHHHHHHHHHhccC
Q 000146 975 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 975 ~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~--------np--~~R~~~l~~L~~~l~~~ 1043 (2052)
..++.++..+. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777777777 8999999999999988765443 3444455544310 01 2454444444321
Q ss_pred CCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--ChhHHHHHhccCChHHHHH
Q 000146 1044 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPALAL 1101 (2052)
Q Consensus 1044 ~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~--G~e~~~~~l~~L~~~~~~~ 1101 (2052)
.....+.++...+.|...+||.+|..++..+.... ..+.+.+.+.+-....+..
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKA 232 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHH
Confidence 22445666888899999999999999998877663 3244444444444333333
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=5.5 Score=51.99 Aligned_cols=335 Identities=17% Similarity=0.150 Sum_probs=200.2
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK 177 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l~ 177 (2052)
.++.+-..-..-|.-++..+++...+ ....++..+- |=|.+ .+.-.-.|+.|+-.+=+.+-.+.+...+-+.+-
T Consensus 82 LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~ik-nDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 82 LLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIK-NDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHH-hhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 34444444455666666666655432 2333444433 33554 444555788888877666656666666655442
Q ss_pred c--cChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHH
Q 000146 178 N--KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 255 (2052)
Q Consensus 178 ~--K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~q 255 (2052)
. --+=|+..+..||..+++.+-. .+++..+...+..+++|.+-.|-.++..++..|.++..+. .+.. -+-+
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spD-l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~-----~~~a 229 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPD-LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTC-----LPLA 229 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCcc-ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-Hhhh-----HHHH
Confidence 2 2344556666777777777543 6778889999999999999999999999999999988532 3222 2334
Q ss_pred HHHHHHHHHhccCC---------CCCC---ccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 256 KKELEVELVNVSGT---------ARPT---RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 256 lkeLe~~f~~~~~~---------~~p~---R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
+..|....-...-. +.|. ..+|--|.- +.+ + +. ..-.--.+.+ ..||.|
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~--p~~---~---D~---------~~r~~l~evl--~~iLnk 290 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY--PTP---E---DP---------STRARLNEVL--ERILNK 290 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--CCC---C---Cc---------hHHHHHHHHH--HHHHhc
Confidence 45554433221100 1121 111211110 000 0 00 0000000000 122222
Q ss_pred CccchhhhhcccCChHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 324 LEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~e---aL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
.- +-..++|-+++-. .|-+...++.+-.-.+.-+..-+..|.+.|.+.-.+++..|+.....|+.. .|.
T Consensus 291 ~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s 362 (938)
T KOG1077|consen 291 AQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFS 362 (938)
T ss_pred cc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cch
Confidence 21 1123455544432 233333444333333345777888888889877777799998877777754 342
Q ss_pred -hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000146 401 -GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 401 -~~~~~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 474 (2052)
..++.-.-.++..++ |+..+||.-+...|-+|+.. ....+|+++++..+.+-.+++|++...=++.+.+...
T Consensus 363 ~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 363 IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 234444677888888 88999999999999999985 6788999999999999999999998777776666554
No 89
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=13 Score=49.73 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=174.4
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000146 98 KTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI 176 (2052)
Q Consensus 98 k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l 176 (2052)
|.+.+.|+.-.-.|.-++.-|+....+ +-.++..-+.|=|. +..-+.-.|+-.+-.++.-|=.-.+...+...+
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qd-----vllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll 151 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQD-----LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLL 151 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchH-----HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHH
Confidence 466677777666666666666644322 00111122222233 122222233333333222121224444555566
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHH
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMK 256 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ql 256 (2052)
+|.+|=|+.-++.|+..+++.--. ...-++....+++.+.+..|=-.+..++.++++-- ++.+ .. |+++-+.-.
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~-~~~l-~~-fr~l~~~lV 225 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS-PDAL-SY-FRDLVPSLV 225 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC-HHHH-HH-HHHHHHHHH
Confidence 677776777666666665533111 12345566667777777777777777777777553 3333 22 233333333
Q ss_pred HHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc--
Q 000146 257 KELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-- 334 (2052)
Q Consensus 257 keLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-- 334 (2052)
+-|..... ..=|+ +.+ ...--|||=- +.|+ .+...+.
T Consensus 226 ~iLk~l~~----~~ysp-------------------------eyd---v~gi~dPFLQ---i~iL------rlLriLGq~ 264 (866)
T KOG1062|consen 226 KILKQLTN----SGYSP-------------------------EYD---VHGISDPFLQ---IRIL------RLLRILGQN 264 (866)
T ss_pred HHHHHHhc----CCCCC-------------------------ccC---ccCCCchHHH---HHHH------HHHHHhcCC
Confidence 33322110 00000 000 0011234310 1111 1111121
Q ss_pred cCChHHHHHHHHH-HHHHh-cCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHH------------Hhhhc-
Q 000146 335 ATKWSERKDAVAE-LTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR------------GLRTH- 398 (2052)
Q Consensus 335 s~kWkeR~eaL~~-L~~L~-~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~------------~L~~~- 398 (2052)
+.+.. +.+.. |.+++ ++.--.+..+.=|..++..++. ++|..++..|++||+.+-. +|..-
T Consensus 265 d~daS---d~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 265 DADAS---DLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred CccHH---HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 22222 23333 33344 2222223445666777777777 8888899999999888653 22211
Q ss_pred -ch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 399 -FS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 399 -f~-~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
++ ..+..-=..++++++|....++.-+.+.+-++... .++..++.+++..|..-.+..|..+..-+..+.+...+.
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 22 23445557889999999999999999999988864 678899999999998778899999999888888876553
No 90
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.24 Score=63.92 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=131.0
Q ss_pred cccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh
Q 000146 888 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 967 (2052)
Q Consensus 888 dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~ 967 (2052)
|+...+---++...++++-++|...+.-|..++. .+..|....|..|...|..|+.|--++|+.+|+-++..+-..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3433344456778899999999999999998886 346777777888999999999999999999999998887632221
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCC
Q 000146 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1047 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~ 1047 (2052)
+=.+ +..++-.++ -.|..+.||.+|..++.. . ..-+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~-v~n~l~~li--qnDpS~EVRRaaLsnI~v--d----nsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECP-VVNLLKDLI--QNDPSDEVRRAALSNISV--D----NSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred Cccc-HHHHHHHHH--hcCCcHHHHHHHHHhhcc--C----cccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 1111 122233333 269999999998665532 1 22345454444432 3556777776665554 221 22
Q ss_pred chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1048 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1048 ~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
.....+.-+-.+|+||.-+||.+++.++..=+-.+-...+...+..|+.+
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvs 276 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVS 276 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccc
Confidence 33455555777999999999999999987644444444566677777743
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.85 E-value=0.034 Score=49.85 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 000146 379 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQA 431 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~a 431 (2052)
.|+..|+.+|+.++......+.+|...++|.|+..+.|....||.++..||..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58899999999999888888999999999999999999999999999888764
No 92
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=16 Score=48.41 Aligned_cols=369 Identities=14% Similarity=0.162 Sum_probs=190.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 723 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 723 (2052)
++.+.|.+.+-+.|.+||..+...+-.++.. .+++...++...-.++ .-+++.|=+ +-+.+++..
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~---p~Llm~IiRfvlps~~---~elKKLly~---ywE~vPKt~------ 88 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDL---PSLLMTIIRFVLPSRN---HELKKLLYY---YWELVPKTD------ 88 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCc---hHHHHHHhheeeccCc---hHHHHHHHH---HHHHccccC------
Confidence 4667889999999999999988776654443 3333333322100111 112222211 112111111
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000146 724 CLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 803 (2052)
Q Consensus 724 il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~ 803 (2052)
+|.|+... ... |++.+-+- .+|+|-=+|-.++.+|+.+=+. --+.++++.++
T Consensus 89 ---------~dgkl~~E----MIL---------vcna~RkD-LQHPNEyiRG~TLRFLckLkE~-----ELlepl~p~Ir 140 (948)
T KOG1058|consen 89 ---------SDGKLLHE----MIL---------VCNAYRKD-LQHPNEYIRGSTLRFLCKLKEP-----ELLEPLMPSIR 140 (948)
T ss_pred ---------CCcccHHH----HHH---------HHHHHhhh-ccCchHhhcchhhhhhhhcCcH-----HHhhhhHHHHH
Confidence 11222211 111 22222233 3788888888888888876431 12457888899
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHHhhC------hh-hHhhhhh-ccHH-HHHHHHHHHhcCCCCCCCCCcc---cccccc
Q 000146 804 DTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLAD-VKPA-LLSALDAEYEKNPFEGTVVPKK---TVRASE 871 (2052)
Q Consensus 804 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G------~~-l~~~L~~-lkP~-ll~~Le~efeK~~~~~~p~p~r---~~r~~~ 871 (2052)
.+ |+|+++-||..|+-++.++|+... +. +..||.. ..|. ....+---|.- .|.| ..-+.
T Consensus 141 ac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~-------D~ErAl~Yl~~~- 211 (948)
T KOG1058|consen 141 AC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTT-------DPERALNYLLSN- 211 (948)
T ss_pred HH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhc-------CHHHHHHHHHhh-
Confidence 86 999999999999999999998722 22 4456632 2221 11111111100 0000 00000
Q ss_pred ccCCCCCCCCCCCCcc-cccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC----------CChhhHH----
Q 000146 872 STSSVSSGGSDGLPRE-DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP----------AGTGELF---- 936 (2052)
Q Consensus 872 ~~~~~~~~~~d~lpr~-dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~----------~~~~eL~---- 936 (2052)
.|.+|.. +++...--+++...-..+-.+|..-++.+..++...+..+.. +. ...+
T Consensus 212 ---------idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa 281 (948)
T KOG1058|consen 212 ---------IDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAA 281 (948)
T ss_pred ---------HhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHH
Confidence 0001100 011000012222222244445555566666666532221110 01 1122
Q ss_pred HHHHh---hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000146 937 GGLRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 1013 (2052)
Q Consensus 937 ~aL~~---rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~ 1013 (2052)
..+.. ...|.|.++. .+.-|..+. ..-+..+..++-.++..|.-..-.||.-+..-.-.++.+-....++.
T Consensus 282 ~~~i~l~~kesdnnvklI--vldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~ 355 (948)
T KOG1058|consen 282 STYIDLLVKESDNNVKLI--VLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQ 355 (948)
T ss_pred HHHHHHHHhccCcchhhh--hHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHH
Confidence 12222 2255555443 334444444 33445677788899999999999999988877777777777777777
Q ss_pred HHHHHHhcC-----ccChhHHHHHHHHHHHHhccCCCCCchh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1014 YVTTALTDA-----KLGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1014 ~l~~~L~~~-----k~np~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.+..-+... ..|-.-|+.+++-+..+--+++ ++. ..+.-++..+.|.|+..-...-..+...+..++
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 666555311 0023458888888887655543 444 344558888999988544443333333333333
No 93
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.62 E-value=0.24 Score=67.34 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCC---hhhHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAG---TGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~---~~eL~~aL~~rL---~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
-+|..|--.|.-+... +.++. +-.|-..|..-| .|+| .-....+.+...++..||..+.+ +-..+|.+
T Consensus 748 ~errgael~L~~l~~~----fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKM----FGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHHH----hhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHH
Confidence 3566666666655542 22222 122334444444 2333 15567778888888899999888 78889999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHH
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLK 1054 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~ 1054 (2052)
+..+......+|-++..|+..+..... +..+++.+...+.+- .-..|+.....+..++..... .+-..-+++
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DKFVRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 999999999999999999999998754 333445555555431 122344433333334433322 223344677
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH-------HHHHhccCChHHHHHHHHHHhh
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~-------~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
|+..++.|....||.+|.+++..+...++.+. |.+.+-..+...++.|+..++.
T Consensus 900 pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 89999999999999999999999999988654 3333433334445555555543
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.53 E-value=1.8 Score=55.32 Aligned_cols=145 Identities=15% Similarity=0.021 Sum_probs=91.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.+...+++.+...|..+++.+...- .+-...|+..|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 35677788888889988886664311 22345677778899999999999999987632
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... ++-.+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3345566779999999999998888543 3344444444433322 222344444444321 1124555
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
.|...+.|.. ||..+..+++.
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHH
Confidence 5666677754 77777766653
No 95
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.47 E-value=0.76 Score=49.67 Aligned_cols=98 Identities=15% Similarity=0.313 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||. ++-.+-+++.. ++..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 3466885 44455555532 2333478999999999999999999999999999999999997543 56788
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88887753 567899999999999998875
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.19 E-value=0.064 Score=42.12 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
++.+.++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 55688999999999999999999999876
No 97
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.17 E-value=21 Score=44.89 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHHhChhh--HHhhh
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPAV--EKSSK 974 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-----~DsN~~V~~~Al~~l~~la~alg~~~--~~~~~ 974 (2052)
...+.|+|..+++.|+.++.--.+-+++. +++++..=+..+ ...|.+|+-.||..++.+.+.---+| .+.+.
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~-~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPT-FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhcc-HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 44578999999999988876432233333 577765444433 55789999999999999987543333 25677
Q ss_pred HHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHH
Q 000146 975 GVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~-~VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
.+++.++..+.|-+. -||--|..+|-......+...-++.
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~L 613 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYAL 613 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhH
Confidence 888888887776444 3665555566554444443333343
No 98
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.01 E-value=0.37 Score=61.38 Aligned_cols=118 Identities=20% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
.+..|...+.|.+..|+..+...++.+ .-....+.|+..+++..+.|+.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 366777777777777777777776643 22345566777777777777766664444321 1223
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 445 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 445 ~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.++.||.+|..+++.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566777788888887777765221 2344556677888888888888877743
No 99
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=24 Score=48.29 Aligned_cols=301 Identities=15% Similarity=0.101 Sum_probs=148.7
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-----------hhhhh
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-----------EAVDV 167 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~-----------~~~~~ 167 (2052)
...-||..+-=-.++.+..+-...|..+.+..-..+-.+++|.-+.-+.+...|..|++.++-. ++.|+
T Consensus 556 ~~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DY 635 (1014)
T KOG4524|consen 556 GIKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDY 635 (1014)
T ss_pred hhhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHH
Confidence 4455676666667777777777777766555545566688994446777888888888876644 23456
Q ss_pred HHHHHHHHhhc--cChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhC-----
Q 000146 168 FLDVMEKAIKN--KVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG----- 239 (2052)
Q Consensus 168 v~e~Ll~~l~~--K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG----- 239 (2052)
++..|...+++ -.|.+. .++.=+++.=+...++ +++++..+.+.++..-.. | +..+++-+|.++-
T Consensus 636 lv~sla~~L~~~~~s~~~~----~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~-~--~~~~~~ll~s~ik~~~~~ 708 (1014)
T KOG4524|consen 636 LVNSLALRLNTSGMSPRVP----DVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGY-S--CLQFFQLLHSIIKEMKKK 708 (1014)
T ss_pred HHHHHHHHhccCCCCchhH----HHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccc-c--hhHHHHHHHHHHHHHhhc
Confidence 66666544442 123221 1111112211112222 445555555554421111 1 3333333333221
Q ss_pred --Cc-hh----------hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCC
Q 000146 240 --KD-PV----------KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 306 (2052)
Q Consensus 240 --~~-~l----------~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2052)
++ .+ ...+ .+.+|.|+.+++.-...+....-|+ .+ ... -+... ...++.++.++.++
T Consensus 709 ~~~~~il~~~~d~~~~~~~k~-l~e~p~~~~e~~n~~~d~~~~l~~~--~~---e~~---~~~~~-~~~~dnee~~e~~~ 778 (1014)
T KOG4524|consen 709 YINDEILGHIADQHISQSTKV-LNELPTQVKELINDENDLKDDLEPS--NF---EKD---FASKL-REPDDNEEPEEREE 778 (1014)
T ss_pred cccchhhHHHHHHHHHHHHHH-hhcchhhHHHhhhhHHHHHHhhhhH--HH---HHH---hhhhc-cCCCcccCcCCCCC
Confidence 00 00 0111 1236677776655444332111011 00 000 00000 00000000000000
Q ss_pred CCC---CCC-C---CC-CcccccCcCccchhhhhcccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhc
Q 000146 307 PEI---DEY-E---LV-DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLIT 374 (2052)
Q Consensus 307 ~~i---D~~-d---l~-~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~---L~-~~~ki~~~dy~~l~~~L~k~l~ 374 (2052)
+.. +.+ | .. +-++|+.++- ..-.-.+++++-..|.+||+-|.- ++ ..+...-...+...+.+..++.
T Consensus 779 e~edens~~~d~ep~~~~qv~iv~kIl-~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 779 EVEDENSEYTDTEPILPDQVKIVLKIL-GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred CccccccCCCCCCCCCChHHHHHHHHH-HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHh
Confidence 001 111 1 01 1233333332 222334788999999999998863 22 3333222234455567778888
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcc-hhhhhhHHHHHHHHhccC
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEK 417 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~llp~LL~klkdk 417 (2052)
+.|+-++.-|++||..|+..-|.-+ .++.+.++|.+=..+.+.
T Consensus 858 ~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 858 CKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred cCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766433 367778888776655553
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.77 E-value=1.4 Score=55.86 Aligned_cols=202 Identities=18% Similarity=0.194 Sum_probs=134.2
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+-..++.+.++++-++|+..++-|.-+... -+.|....|.-|..-|..|+-|-.+.|+.+|+.++.++-.--+.. +.+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 334567888999999999999988877753 355555556777888889999999999999999999887443433 333
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--Cchh
Q 000146 973 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1050 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~ 1050 (2052)
...++-.++ -.|....||.+|. ++..+..-+ .|.+.+-..+- +..-|..+... +|+.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~al--lni~vdnsT----~p~IlERarDv--~~anRr~vY~r---~Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLAL--LNISVDNST----YPCILERARDV--SGANRRMVYER---CLPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHH--HHeeeCCCc----chhHHHHhhhh--hHHHHHHHHHH---Hhhhhcchhhcccc
Confidence 333444433 3688899999963 333333333 34444433332 34456655544 44444331 1223
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000146 1051 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1109 (2052)
Q Consensus 1051 ~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~ 1109 (2052)
..+.-+--+|.|+.-+||.++..++..-+..--.-.+...+..|+-+..+.+..+|++-
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334556899999999999999988766665555566678888888777666776654
No 101
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.77 E-value=0.38 Score=65.64 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000146 339 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 413 (2052)
Q Consensus 339 keR~eaL~~L~~L~~--~~ki~~~dy~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 413 (2052)
-+|+.|...|..+.. ++.+ ...|..+-..|.+.+. |.|- -.....+....++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl-~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSL-AAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHH-HHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 568887777776653 2111 1224444455555554 3441 2333455566666667777777 77889999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 414 LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 414 lkdkK~~V~~aa~~aL~ai~~~~~-~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
..-.-..||-++..|+..+++..| .....+++.+..-++.-.--+|++...-+..++.......+.++..-++|.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 999999999999999999998622 1133444555444554445566666555555555443344557778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 493 LNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 493 l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
+.|....||++|.+++..+..+++..
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998843
No 102
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.67 E-value=1.1 Score=54.69 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 982 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~----~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~ 982 (2052)
-+...|+|-.+.|.+. |.+.. +.=....|...+.-+..+|+-.-++++....--+|+.+.+.++.++..++-
T Consensus 70 GVH~KaLevY~~IF~~----ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLp 145 (307)
T PF04118_consen 70 GVHQKALEVYEYIFER----IGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLP 145 (307)
T ss_pred HHHHHHHHHHHHHHHh----cCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 3566777777666642 33321 122345566667888889999999999999989999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC------C--------CCc
Q 000146 983 CLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPD 1048 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~------~--------~~~ 1048 (2052)
.+-|....+-+.+...++.+...+|-+-+...+...+.+ +|..|..++.|+.+.+.... . .++
T Consensus 146 GLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T PF04118_consen 146 GLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD 222 (307)
T ss_pred ccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence 999999999999999999999999988888888888864 48899999999999998866 1 123
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1049 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1049 ~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
..-++..+..||+|.+-=|+..+-..| ..++.
T Consensus 223 ~~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 223 PGLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 334566688999999998887765444 55555
No 103
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.59 E-value=0.68 Score=50.43 Aligned_cols=99 Identities=20% Similarity=0.343 Sum_probs=78.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+...||.. +-.|.+.+.. .+..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGL----ILDVCDKVKS-----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHH----HHHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568853 3334444431 133347899999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+.+.+.+ ....|++-+...+..|.....-
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888887 7888999999999999988763
No 104
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.43 E-value=20 Score=43.19 Aligned_cols=235 Identities=12% Similarity=0.161 Sum_probs=152.6
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCC
Q 000146 802 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 881 (2052)
Q Consensus 802 l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~ 881 (2052)
+... |.+.++.+|..|+.+|..+-..+.+.. +...+...
T Consensus 4 Lg~~-Ltsed~~~R~ka~~~Ls~vL~~lp~~~------L~~~ev~~---------------------------------- 42 (262)
T PF14500_consen 4 LGEY-LTSEDPIIRAKALELLSEVLERLPPDF------LSRQEVQV---------------------------------- 42 (262)
T ss_pred hhhh-hCCCCHHHHHHHHHHHHHHHHhCCHhh------ccHHHHHH----------------------------------
Confidence 3444 889999999999999877765444321 11111111
Q ss_pred CCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh--ccchHHHHHHHHHHHH
Q 000146 882 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLG 959 (2052)
Q Consensus 882 d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL--~DsN~~V~~~Al~~l~ 959 (2052)
|..=+.+++ .+|..=..++..+..++. .+.+.+....+++..+.+.. ..--...+....+++.
T Consensus 43 -----------L~~F~~~rl--~D~~~~~~~l~gl~~L~~--~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~ 107 (262)
T PF14500_consen 43 -----------LLDFFCSRL--DDHACVQPALKGLLALVK--MKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLD 107 (262)
T ss_pred -----------HHHHHHHHh--ccHhhHHHHHHHHHHHHh--CcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence 122223334 245555566777777774 24455544456666665433 2234557788888888
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------c-CccCh--hH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------D-AKLGA--EG 1028 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~-------~-~k~np--~~ 1028 (2052)
.+...-...+......++..+++.+. ++.|.----+.+-+..+.....+..+.+.+.+.+. . +..+| -.
T Consensus 108 ~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT 187 (262)
T PF14500_consen 108 SLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGIT 187 (262)
T ss_pred HHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCC
Confidence 88877666666667778888888774 56665555555666677777777666776666654 1 11112 25
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000146 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1095 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~ 1095 (2052)
|.++-.-|..++... +...+.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 188 ~edLk~~L~~cl~s~---~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 188 REDLKRALRNCLSST---PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHHhcCc---HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 666667777777643 345555555 8889999999999999999999999999999998876553
No 105
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.36 E-value=39 Score=46.16 Aligned_cols=167 Identities=18% Similarity=0.111 Sum_probs=90.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 979 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~-aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ 979 (2052)
+.+++-+.|.+|+..+-..+..+ +++..++. .+|... --|..+....---+...++.-+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 67778888999998876665532 22333332 333333 2333333322222222222111 345556677
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhh
Q 000146 980 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1059 (2052)
Q Consensus 980 ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~ 1059 (2052)
+.+-++|.++.+|..|..++..+-..-=++.+++.+...+.++ ++.+|.++.-.+..++.--+.--.-...+..+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 8888888888888888777765432111233333444445555 57788887777776654221100001122334445
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 000146 1060 MTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1060 L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+.|.++.|-.+|..+|..+..
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 175 VADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hhCCCchHHHHHHHHHHHhch
Confidence 578888888877777766553
No 106
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=32 Score=47.15 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC--CHHHHHH--------
Q 000146 376 VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL--NLVDVVE-------- 445 (2052)
Q Consensus 376 ~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~--~l~~ll~-------- 445 (2052)
+|+--+..++..|+.+|..+|..|.+..-..+=++++++.+..+.|++.+..|+.+|+.+ |. +++-++.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a-~~y~s~~~lI~en~DYlv~ 638 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADA-LNYGSPPHLIRENVDYLVN 638 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-cCCCChHHHHHhhhHHHHH
Confidence 444444555788999999999999999999999999999999999999999999999987 43 3544443
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc
Q 000146 446 DVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 494 (2052)
Q Consensus 446 ~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~ 494 (2052)
.|...+++ -.|++ -..+..++...+.. ..++++.++..+.+.++
T Consensus 639 sla~~L~~~~~s~~~----~~Vl~vVl~~s~~~-~i~~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 639 SLALRLNTSGMSPRV----PDVLMVVLQYSDYG-TIPNLKDVVQTIFKLLD 684 (1014)
T ss_pred HHHHHhccCCCCchh----HHHHHHHhhcCCCC-chhhHHHHHHHHHHHHH
Confidence 33222221 12332 23444444444333 23556666666666664
No 107
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.89 E-value=0.46 Score=63.21 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhh---h-cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000146 362 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR---T-HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 362 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~---~-~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~ 435 (2052)
|++++++|...+. +.-.+ ++.+..|+..++ + -.-|....++|-||+.+.-....|+-+...++..+..-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666777766665 11111 223333333333 2 23577889999999999999999998888988887764
Q ss_pred c----CCCHHHHHHHHHHH-hhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 436 G----CLNLVDVVEDVKTS-VKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 436 ~----~~~l~~ll~~l~~~-L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
. ..+++-+++.++.- ..++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|...-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 23456777777653 23554 48999999999988777888878888899999999999999999999998876
Q ss_pred HHHH
Q 000146 509 AAIA 512 (2052)
Q Consensus 509 ~~l~ 512 (2052)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5443
No 108
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=30 Score=45.58 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=120.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 885 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lp 885 (2052)
||+.+|.+||..|..++..+|-..|++...- ..=..|++.|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e------~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAE------EMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHH------HHHHHHHHHHH--------------------------------
Confidence 5899999999999999999998888775311 11112222222
Q ss_pred cccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 000146 886 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 964 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~a 964 (2052)
.+++.++|.--.+|-+|++.+.++...-=--|.++...+++.-+..-+ .|+-..|+..+.+.|.+|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 345556676677899999999888864222344555556655555544 67888899999998888763
Q ss_pred hChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhH--HHHHHHHhcCccChhHHHHHHHHHHHHh
Q 000146 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMV--PYVTTALTDAKLGAEGRKDLFDWLSKQL 1040 (2052)
Q Consensus 965 lg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~--~l~~ll--~~l~~~L~~~k~np~~R~~~l~~L~~~l 1040 (2052)
.+..-+.++.++|.+=-.+.|+...||-|+...|-.+-.+- ..-.++ +.+..-|...+. +..|.-+.-.+..+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~-~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSR-PVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhcccc-HHHHHHHHHHHHhhc
Confidence 34445678889998888999999999999988887665432 122222 244555554432 444444333333343
No 109
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.60 E-value=1.3 Score=54.62 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhhhhhh--hhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhccChhhHH
Q 000146 111 ALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 185 (2052)
Q Consensus 111 gl~al~~~l~~~~~~~~~--~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~~~v~e~Ll~~l~~K~PKvv~ 185 (2052)
.|.++..++++....... ....++..||..++. ..+.+|+.|++|+-.|+=++. ....+..+...+..-.+.++.
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 455666667766533322 345788889988887 578999999999999887753 345555566777556788999
Q ss_pred HHHHHHHHHHHHhCCCCcC----------hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHH
Q 000146 186 PAIDVMFQALSEFGAKIIP----------PKRILKMLPELFDHQDQNVRASSKGLTLELCR 236 (2052)
Q Consensus 186 ~~l~~L~~~l~~FG~~~i~----------~k~il~~l~~ll~~~dk~VR~~a~~l~vely~ 236 (2052)
.+++++.+++-.||...+. ...+++.+.+.+.+.++.||..|.+-+.-|+-
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999996653 24688999999999999999999999888763
No 110
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.56 E-value=28 Score=46.07 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=116.9
Q ss_pred ccChhhHHHHHHHHHHHHHHhCCCC--cC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHH
Q 000146 178 NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254 (2052)
Q Consensus 178 ~K~PKvv~~~l~~L~~~l~~FG~~~--i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ 254 (2052)
.|++-+..-.+..+..++..|-..- .. +.+++.++.+..+..|++||-....++.-+.-..+. +...+++.|...
T Consensus 53 kKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd~vfn~l~e~ 130 (892)
T KOG2025|consen 53 KKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDDDVFNKLNEK 130 (892)
T ss_pred ccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCHHHHHHHHHH
Confidence 4666677777777777777665421 11 567889999999999999998887776665554431 334444443333
Q ss_pred HHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc
Q 000146 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK 334 (2052)
Q Consensus 255 qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~ 334 (2052)
++ .++.
T Consensus 131 l~--------------------------------------------------------------------------~Rl~ 136 (892)
T KOG2025|consen 131 LL--------------------------------------------------------------------------IRLK 136 (892)
T ss_pred HH--------------------------------------------------------------------------HHHh
Confidence 22 2222
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 413 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 413 (2052)
+..-..|.+|+..|..+-..++ .+--+++..|+..+. |++.-|++.|+-+|..= ...+|-++++
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vd------------nsTlp~IveR 201 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISVD------------NSTLPCIVER 201 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccC------------cccchhHHHH
Confidence 2223347788887777653322 223457778888887 99999999998877531 2357888999
Q ss_pred hccCcHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 000146 414 LKEKKPTVAESLTQ-TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 466 (2052)
Q Consensus 414 lkdkK~~V~~aa~~-aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L 466 (2052)
.+|-+..+|.-+-+ +|-.+ ..-..+.+.-+.-+.-|+.+..-.||..+...+
T Consensus 202 arDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 202 ARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99887766654322 12222 110123333333334455555555555444433
No 111
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.36 E-value=24 Score=44.93 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCc-ChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHH
Q 000146 182 KAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 260 (2052)
Q Consensus 182 Kvv~~~l~~L~~~l~~FG~~~i-~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe 260 (2052)
-++.+.+.++..++.+|-..-+ .....++.+...+-|..+.||..|..+..++-..+|+. ..+. +.+.
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~ 217 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVL 217 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHH
Confidence 4788999999999999866332 34457777777777999999999999999998888753 1111 1122
Q ss_pred HHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhccc-CChH
Q 000146 261 VELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWS 339 (2052)
Q Consensus 261 ~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWk 339 (2052)
..++..-. +.++. + .+. +.+.+++.+ +..+
T Consensus 218 ~~~~~~~~---~~~~~---------------------------------~------------~~~-~~L~~mi~~~~~~~ 248 (372)
T PF12231_consen 218 EDLQRSLE---NGKLI---------------------------------Q------------LYC-ERLKEMIKSKDEYK 248 (372)
T ss_pred HHhccccc---cccHH---------------------------------H------------HHH-HHHHHHHhCcCCcc
Confidence 11111000 00000 0 000 011112222 1111
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcc---hhhhhhHHHHHHHHhc
Q 000146 340 ERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLK 415 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klk 415 (2052)
.=...--.+..++..+.+... .+.+.+....+++++.++.+...|..|-..+...+..+- .+..+.+..++.-.++
T Consensus 249 ~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~ 328 (372)
T PF12231_consen 249 LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLR 328 (372)
T ss_pred hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhC
Confidence 111111223334444444443 457888889999999999999999999999988665442 3557777777777776
Q ss_pred cCc-H----HHHHHHHHHHHHHHH
Q 000146 416 EKK-P----TVAESLTQTLQAMHK 434 (2052)
Q Consensus 416 dkK-~----~V~~aa~~aL~ai~~ 434 (2052)
.++ . .++.++...+..++-
T Consensus 329 ~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred ccccccccHHHHHHHHHHHhchHH
Confidence 554 2 556666666665553
No 112
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.33 E-value=1.2 Score=48.01 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=77.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh-h-HHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-K-GVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~-~llp 978 (2052)
+.+.||. ++-+|.+++.. . +..-.+.+.+|+++|...|++++..||.++..+++.+|..|...+ . .++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3556886 44455555542 1 333589999999999999999999999999999999999986543 3 5666
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D---~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+++.+.. ....|+.-+.+.+..|....+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46789999999999999988754
No 113
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.30 E-value=3.7 Score=55.40 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=115.4
Q ss_pred cccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
+.+++=++|.+|++.+.+.. .+ .|...++..+.|-+.--|+-+-...---+...++.=. ..+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHH
Confidence 67777889999999876643 32 2467777777766664455555544444444433211 45778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 490 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 490 (2052)
+-+.|+++-+|-.|..++..+=.. .=++.+++.|...+.|+++.||..++..+..+++-.. .. +... .+-.+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998777766644221 1145566777788899999999999999999886432 11 1233 566677
Q ss_pred HhhcCCChHHHHHHHHHHHHHHH
Q 000146 491 ECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 491 k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.++.|++|.|-.+|..++..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999998888887766653
No 114
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.25 E-value=20 Score=51.57 Aligned_cols=236 Identities=16% Similarity=0.135 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchh------hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHH
Q 000146 702 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 775 (2052)
Q Consensus 702 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K------~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~ 775 (2052)
+++++..++..... .-..+|..|+.+++.+. -+..|..++..++.+..+. +.+.+...+...+. . ..
T Consensus 164 ~~~i~~~li~e~d~----v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDT----VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhcc----chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 77777777766322 22345566666666542 2455555666655554432 33333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCC-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 776 EGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 776 e~L~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..-....++|-+... ..--+-.+++++..- |.+.+-.+|-.|..++|.|+...+..+. +
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~------------------~- 296 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS------------------E- 296 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc------------------c-
Confidence 111122222222111 000133577777766 8899999999999999999865432210 0
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
. ...+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 297 ----------------------------~------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 297 ----------------------------T------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred ----------------------------c------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 0 011345788889999999999999999888863 2222211 34
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 1005 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~ 1005 (2052)
+..+|+.+..|.+..++...+.....++ .-.+ .+...++..+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5566666777777766654433222211 1111 33333777888999999999999999999999986
No 115
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=66 Score=44.48 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHh-cC-CCCCCCChHHHHHHHHHHhc----CcCHHHHHHHHHHHHHHHHHhhhc--chhh-hhhHHHHHH
Q 000146 341 RKDAVAELTKLA-ST-KRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH--FSGS-SRFLLPVLL 411 (2052)
Q Consensus 341 R~eaL~~L~~L~-~~-~ki~~~dy~~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~--f~~~-~~~llp~LL 411 (2052)
+.+|+.-+..++ +. +...++-.+-++..|.+.-. ..|.+-...|+..++.++..|.++ |+.. -..+++.++
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 467777777666 33 22223333334444443322 456777889999999999988754 4332 335667777
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh--HHHHhhhhH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDY 485 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l 485 (2052)
--|..+--..|.-+...+..+..- ....+...++-...+|. ++.-.||.+++..|..++.+.... .+.++++.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 788888888998888888888742 01235667777778888 556689999999999999877543 366888999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 538 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~ 538 (2052)
|..+.++.++..-+. -..++..+...++++ +.||-..|-..-...+-.+
T Consensus 549 mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~La~~F~k~ 597 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQNLAETFLKV 597 (1010)
T ss_pred HHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHH
Confidence 999999998887765 345666667777765 6777666644333333333
No 116
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=51 Score=43.74 Aligned_cols=260 Identities=14% Similarity=0.075 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHH
Q 000146 769 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 848 (2052)
Q Consensus 769 KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~L 848 (2052)
-.+-|+..+...|-.+.+.+. .-++....++.+..+ |++.+-.|-.++..++..|-+...+..+..+ |...+.|
T Consensus 160 ~~~~vkqkaALclL~L~r~sp-Dl~~~~~W~~riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~----~~avs~L 233 (938)
T KOG1077|consen 160 SMDYVKQKAALCLLRLFRKSP-DLVNPGEWAQRIVHL-LDDQHMGVVTAATSLIEALVKKNPESYKTCL----PLAVSRL 233 (938)
T ss_pred chHHHHHHHHHHHHHHHhcCc-cccChhhHHHHHHHH-hCccccceeeehHHHHHHHHHcCCHHHhhhH----HHHHHHH
Confidence 334466666666666665432 234555667777777 8888889999999999999888877655433 2222222
Q ss_pred HHHHhcCCC-------CCCCCC---ccccccccccCCCCCCCCCCCCcccccccccHHHHhhc----CCCChHHHHHHHH
Q 000146 849 DAEYEKNPF-------EGTVVP---KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL----ESPDWKVRLESIE 914 (2052)
Q Consensus 849 e~efeK~~~-------~~~p~p---~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l----~d~~Wk~R~eale 914 (2052)
..-.-.... -.-|.| ++.+|-=+--+ ..+|.-.|.-+. .+...++.+. .+++-+.+..-=.
T Consensus 234 ~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p----~~~D~~~r~~l~-evl~~iLnk~~~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP----TPEDPSTRARLN-EVLERILNKAQEPPKSKKVQHSNAKNA 308 (938)
T ss_pred HHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC----CCCCchHHHHHH-HHHHHHHhccccCccccchHhhhhHHH
Confidence 222111100 000111 00000000000 000000000000 0111222222 2233333332222
Q ss_pred HHHHHHHhccccC--CCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHH
Q 000146 915 AVNKILEEANKRI--QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHM 991 (2052)
Q Consensus 915 ~L~~ll~~a~~~I--~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~-D~k~~V 991 (2052)
-|-+.|.-+ -++ .++.+...+..|...|.+-..+++-.|++.+..|+.. +.. -..++.-.-.++..|+ +..-.|
T Consensus 309 VLFeaI~l~-~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s-~davK~h~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 309 VLFEAISLA-IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFS-IDAVKKHQDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHH-HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cch-HHHHHHHHHHHHHHhccccchHH
Confidence 222222211 111 1233455667777777888888888888888888866 222 2334445777888898 899999
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 992 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 992 R~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
|+-|.+-|-+|...-....++..++..|.+. .+..|.++.--.+-.-+++.
T Consensus 386 rrravDLLY~mcD~~Nak~IV~elLqYL~tA--d~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 386 RRRAVDLLYAMCDVSNAKQIVAELLQYLETA--DYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888888999999999876 57889887765554444443
No 117
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.93 E-value=0.75 Score=61.33 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=93.4
Q ss_pred ccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhh
Q 000146 891 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 891 ~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~-~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~ 969 (2052)
..|-|.+.+.+....--+|-.-++.|..++..-.+ .+.|. +..|++.|.+.|+=+...|+..+++++..+....+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 33556677777655555666677788777864322 23344 58899999999988888899999999999999999999
Q ss_pred HHhhhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCch
Q 000146 970 EKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D~k---~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
..|+..++|.++..-.|++ ..||..|.+||+++.+.++..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999888877 689999999999988866533
No 118
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.86 E-value=0.79 Score=49.76 Aligned_cols=105 Identities=30% Similarity=0.515 Sum_probs=75.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.+|. ++-.|-+++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+-
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556885 33345555542 1 33348999999999999999999999999999999999998754 345777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHH
Q 000146 979 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 979 ~ll~~l~D~k~--~--VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
.+...+.++.. . |++.+...|..|....+-+.-++.
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~ 128 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSL 128 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchH
Confidence 77776654333 2 899999999999998854433333
No 119
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.86 E-value=1.5 Score=47.72 Aligned_cols=99 Identities=18% Similarity=0.335 Sum_probs=75.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 979 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp~ 979 (2052)
...+|.. +-.|-+++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+..
T Consensus 18 ~~~dw~~----ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~ 88 (142)
T cd03569 18 GEPDLAS----ILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE 88 (142)
T ss_pred CccCHHH----HHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 4568864 3344444432 1 22247899999999999999999999999999999999998754 3557777
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000146 980 ILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 980 ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
+...+. ...+.|++-+...+..|......+
T Consensus 89 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 89 LKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 776665 466789999999999999987644
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=11 Score=50.69 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=143.4
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCC-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhh
Q 000146 758 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 836 (2052)
Q Consensus 758 l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 836 (2052)
+++.+..+ .++-+-++..++..|..+++.-.. ..+....+++.+... |.|.|+-|==.|++.++.|...+.+.+
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 567777899999999999985432 234556788888887 999999999999996666655444333
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHH
Q 000146 837 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 916 (2052)
Q Consensus 837 L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L 916 (2052)
+..+-++++....... + | .|...=|.+
T Consensus 804 --------l~dL~e~Y~s~k~k~~--~------------------d-------------------------~~lkVGEai 830 (982)
T KOG4653|consen 804 --------LPDLSEEYLSEKKKLQ--T------------------D-------------------------YRLKVGEAI 830 (982)
T ss_pred --------HHHHHHHHHhcccCCC--c------------------c-------------------------ceehHHHHH
Confidence 2222233322111000 0 0 010111333
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHH
Q 000146 917 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 995 (2052)
Q Consensus 917 ~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-~D~k~~VR~aa 995 (2052)
.+++..- ..+....++-|...+...+.|+....+..++..+|.++....-....++..++..++... .|....||+||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333321 111111235566666666788988899999999999999887655556777777776644 58999999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 996 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 996 ~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
...+......+| ..++|.+...+.+. -.++..+. -.|++..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl------~~tl~~~v-----------------------r~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL------DETLLSYV-----------------------RQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH------HHHHHHHH-----------------------hcCchhHHHHHHHHHH
Confidence 999988888777 33444333333221 01111111 1445667888888888
Q ss_pred HHHHHHcC
Q 000146 1076 VEILRAGG 1083 (2052)
Q Consensus 1076 ~~l~~~~G 1083 (2052)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 77655544
No 121
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.62 E-value=1.3 Score=47.58 Aligned_cols=99 Identities=20% Similarity=0.390 Sum_probs=74.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.+|.. +-.+-+++.. . +..-.+.+.+|++||...|++++..||.++..+++.+|..|...+ +.|+.
T Consensus 13 l~~~dw~~----~l~icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWEL----ILEICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHH----HHHHHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 44668863 3344444431 1 233478999999999999999999999999999999999986543 44777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGDNKK--HMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D~k~--~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+...+.++.. .|++.+...+..|.....-
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 77766665432 3999999999999998753
No 122
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.19 E-value=3 Score=46.98 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=85.3
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hhH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 477 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~-~~~~----l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~--~~~ 477 (2052)
.++|.+++-+.|++..-+--|.+.+..++.. +... +++++..|..+|+++++.|...++..|..++...+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5678888888888876666666666666665 1111 45666667789999999999999999999866543 234
Q ss_pred HHHhhhhHHHHHHHhh--c---------CCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 478 VLKVHKDYVPICMECL--N---------DGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l--~---------Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
+.+|++.++|.+-... + .....+++--.++|..+-+.-|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 6788999999887222 2 35578888889999888888887643
No 123
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=7.2 Score=47.92 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=117.8
Q ss_pred CCChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH-HHH
Q 000146 903 SPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLS 978 (2052)
Q Consensus 903 d~~Wk~R~eale~L~~ll~~---a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~-llp 978 (2052)
+.+-..|..|++.|+.+++. |+..+. +|-+...|. .+++++..|+..|..+|+..+..-.+--....+. .++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34567889999999999974 333333 234455555 8999999999999999999887655443333332 567
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--chhhHH-----HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCc-h
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1049 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~--l~~ll~-----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~-~ 1049 (2052)
.++..|. |..-.+|..|.-|+..++++.. .+.++. .+.++|+++..+...+.-++..+..++.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777775 5555788999999999998863 455554 57788887534566777778778877776654322 2
Q ss_pred hhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1050 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1050 ~~ll~p--l~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
..+..+ +.....--+.+++.++..++-.+......
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 222222 22233344567788877777666555443
No 124
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.01 E-value=2.1 Score=44.79 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHH-----H
Q 000146 911 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 983 (2052)
Q Consensus 911 eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~-----~ 983 (2052)
..+..|..++.. .+..+.+++.+|.+||.+.|..++..||.++..+++..|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 445566655532 134468999999999999999999999999999999999999876533 2333322 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000146 984 L-GDNKKHMRECTLTVLDAWL 1003 (2052)
Q Consensus 984 l-~D~k~~VR~aa~~aL~~i~ 1003 (2052)
. .+....||+.+.+.+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
No 125
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.90 E-value=1.5 Score=49.46 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHHhhhHHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000146 949 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 1007 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~al-g~~~~~~~~~llp~l-----------l-~~l~D~k~~VR~aa~~aL~~i~~~~~-------- 1007 (2052)
+|++.|+.+++.+++.. ++.|..|-..++|.- + -.+.|..+-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 566788888888865 2 35579999999999999999987541
Q ss_pred --------------chhhH----HHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---Cc-hhhhHHHHHhhcCCCCH
Q 000146 1008 --------------LDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSS 1065 (2052)
Q Consensus 1008 --------------l~~ll----~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~ 1065 (2052)
+..++ ..+..+|..++ ++..-..+++.++..+...+-. .+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11111 12445555543 4556678888888777776542 23 34555567777889999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 000146 1066 DVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1066 dVRkaA~~~L~~l~~~~G 1083 (2052)
+||-++.-|++.+....+
T Consensus 160 ~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQP 177 (182)
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 999999999998876543
No 126
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.04 E-value=93 Score=42.71 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcc
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~-k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~ 1024 (2052)
..|+..++-+++.||-+-+ +.++.++|.+++-|.-+ ...||.-..-++..++.+.+ .+..+|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3577888888898887766 44666788888777543 34688888888888887764 588999999999987
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
.+.+|..++..|+++++.---. + -.+..-++..|-|.+++||.-|..++..+...-.+
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vK--w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVK--WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhh--cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 5899999999999988642110 1 13444466778899999999999999988766443
No 127
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=7.8 Score=51.80 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHHHh--cCCC-CCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhh-hHHHHHH
Q 000146 337 KWSERKDAVAELTKLA--STKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 411 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~--~~~k-i~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 411 (2052)
+=..-.+||.+|..++ .+.. +..-....+++.|.++++ +.|.-+...||+|+.+|+..+-....-.+. ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 5555677888887754 2222 222245789999999999 889999999999999999999766543222 4789999
Q ss_pred HHhccCc-HHHHHHHHHHHHHHHHhcCCCHHHHHHH-----HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 412 EKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 412 ~klkdkK-~~V~~aa~~aL~ai~~~~~~~l~~ll~~-----l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
+|+-.=- -.|.|.+.+||..|-.. +..+|+.. .+..+.-=.-.+...++.....|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 9987643 67888888888887763 33333321 12222211223445566666666665554444 344567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+|.|..+|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888877888888877665543
No 128
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=89.74 E-value=14 Score=44.49 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=162.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHH-hccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~-~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
|.+...+-+.+-..-..|.-++++++. +.++-|++-.-.-+++-|...+ .--+..+.-.|.=.|..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 456666777788888899999999997 3456676643344555555555 33345556667667777776543321111
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cch------hhHHHHHHHHhcCccC-hhHHHHHHHHHHHHhccC
Q 000146 973 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLD------KMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 973 ~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~-~l~------~ll~~l~~~L~~~k~n-p~~R~~~l~~L~~~l~~~ 1043 (2052)
+ ..-+|-+++.|.+....||+.+.=+|+.++.-. ++. ..++.++..|.+.... ..+| -..|...-+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR--n~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR--NATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH--HhHHHHHHhhCC
Confidence 1 235789999999999999999999998776322 111 1223344444432211 2233 345654444332
Q ss_pred C-CCCch---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000146 1044 S-GFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1119 (2052)
Q Consensus 1044 ~-~~~~~---~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~ 1119 (2052)
. +.+++ ...++.+.+.+.-++++|---|.-++..+.-.- .+.+... |+......+.+.+-...
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~av---ld~g~~~RLvElLs~~s--------- 298 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAV---LDVGIPGRLVELLSHES--------- 298 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHH---HhcCCcHHHHHHhcCcc---------
Confidence 2 23443 445555778888888888776665554332111 1111111 11111112233321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhc---------cccCCCchHHHhhhhhcccc
Q 000146 1120 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1190 (2052)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1190 (2052)
..+++|.-|+.. -+.+ | .+.+++.+ +.+..+.|+ ++|+.. =|.
T Consensus 299 ------------a~iqtPalR~vG--NIVT-G-----------~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEa-CWT 350 (526)
T COG5064 299 ------------AKIQTPALRSVG--NIVT-G-----------SDDQTQVIINCGALKAFRSLLSSPKE-NIRKEA-CWT 350 (526)
T ss_pred ------------ccccCHHHHhhc--Ceee-c-----------CccceehheecccHHHHHHHhcChhh-hhhhhh-hee
Confidence 011111111110 0010 0 01122221 122233333 443322 376
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCc
Q 000146 1191 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1239 (2052)
Q Consensus 1191 f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~ 1239 (2052)
...-+.-..|+.+.-|..-+-+-|+..|-+.||+.+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655555667777778888888899999999999999988777766544
No 129
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=89.58 E-value=2.5 Score=45.93 Aligned_cols=100 Identities=25% Similarity=0.425 Sum_probs=73.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+...||..=. .|-+.+.. . ...-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|...+ +.|+
T Consensus 14 l~~~dw~~il----eicD~In~--~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNM----EICDIINE--T---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHH----HHHHHHhC--C---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4556886433 34344431 2 2334789999999997 46999999999999999999999987543 4577
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000146 978 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 978 p~-ll~~l~D---~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.. +++.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 66 6666653 34589999999999999887644
No 130
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.49 E-value=3.7 Score=45.72 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000146 360 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 436 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~--~~ 436 (2052)
.+|.+|+..|.+.++ +.+..++.++++++|.|+ ..+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 469999999999999 877999999999999885 344553321111111 100 00111111111111 10
Q ss_pred CCCHHHHH-----HHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 437 CLNLVDVV-----EDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 437 ~~~l~~ll-----~~l~~~L~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
..+.++.. ..+...|+++. ..-...++..+..+++....+. .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12333333 33444455544 3445567777777787655554 57889999999999999999999999888888
Q ss_pred HHHHhC
Q 000146 511 IAKSVG 516 (2052)
Q Consensus 511 l~~~~G 516 (2052)
+..+++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 887654
No 131
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.88 E-value=76 Score=40.42 Aligned_cols=169 Identities=19% Similarity=0.124 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 983 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~ 983 (2052)
++--+|.+|+.-++.+++-. +.... .-.-++.++.....+.+-..+..+++++.+++-.- +.+--+... +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCC-HHHHHHH
Confidence 45678999999999999852 11111 11568888888888888899999999999988542 222222222 3566677
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----ccChh-HHH-HHHHHHHHHhccCCCC----
Q 000146 984 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRK-DLFDWLSKQLTGLSGF---- 1046 (2052)
Q Consensus 984 l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~-----k~np~-~R~-~~l~~L~~~l~~~~~~---- 1046 (2052)
+.|..-.+.+++..++-.+..+-. .+.-++.+...+.+. +.+.+ .|. ..-..+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777544577777777777765432 112233333333221 11221 243 3344466677888762
Q ss_pred CchhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000146 1047 PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
.+...-++.++.+|.-++.++|+..-..+-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122256777888898899999988766554
No 132
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.84 E-value=1.3 Score=58.05 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=128.8
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
.+.|-+++.++..+-.+|.--|+.+.+.+. .+.+..+ ..+++-+..-+.|.|..++..++.++..|+..+++.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 355678888999999999998888888875 3443322 568888999999999999999999999999999987
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l---~~ll~-~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
..-..++..+-..-.|....+|.-..-||..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..++...
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccch
Confidence 33455666666666699999999999999988877532 22222 4555666652 2433344544443 2233222
Q ss_pred CchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1047 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1047 ~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.++..-+.| +...+-|.+..||..|..++..+...+-
T Consensus 481 ~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 481 SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 333333344 5556689999999999988876665544
No 133
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.70 E-value=6.4 Score=42.99 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHH
Q 000146 437 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 437 ~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~ 514 (2052)
..+..+.+..|..-++|+||.+-..++..|..|+++|+...-. -.-+.++..+.+++.+ .++.||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3556777777878889999999999999999999999865322 1236788889999998 9999999999999999988
Q ss_pred hCCh
Q 000146 515 VGMR 518 (2052)
Q Consensus 515 ~Ge~ 518 (2052)
+...
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
No 134
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=2.1 Score=55.00 Aligned_cols=106 Identities=25% Similarity=0.426 Sum_probs=81.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 976 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~l 976 (2052)
..+.+.||-.=.+ |.++|.. .... ..|.+.+|++||+..|..|+..||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467789975443 4444431 1111 36999999999999999999999999999999999999744 3568
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHH
Q 000146 977 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVP 1013 (2052)
Q Consensus 977 lp~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~l-~~ll~ 1013 (2052)
+.-++...+.+ ...||+-+...|++|.+.++- +.-++
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~ 122 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLP 122 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcch
Confidence 89999888876 557999999999999998753 44444
No 135
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=5.7 Score=56.87 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=136.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.+++.+.-++-.+|..|+.++.+++...+....-..++.....+.+.+.|-+..|+.++-.++..+.+.+++.+.+|++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56678888899999999999999997532222222346667777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHh---------cCchhhHHHHHHHHhcC---cc--------------ChhHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAA---------VHLDKMVPYVTTALTDA---KL--------------GAEGR 1029 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~---------~~l~~ll~~l~~~L~~~---k~--------------np~~R 1029 (2052)
++|..+-..-|..-.|..+|-+.+...... |+ ..+++.+.+.+... .. -+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~-~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCD-PEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhh-HHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHH
Confidence 999999999999999998888877654431 11 12223333222110 00 12233
Q ss_pred HHHHHHHHHHhccCCCCCc-------hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000146 1030 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1096 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~ 1096 (2052)
...+..+...+.......+ .+.+... +.+.+.++++.||.+..+++-.+...+..-.|....+.+++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 4455555555543332111 2223322 66678999999999999999888877665434444444443
No 136
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=88.02 E-value=97 Score=40.27 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~---l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
++..++.|-|-..+++|-.-|.-.+..++.++... ..+ +++.+..+-..|+..+...|-.++..|.++....|...
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~-nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE-NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 34556667777777777776665555556665543 123 33444445556666667777778888877665554331
Q ss_pred HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhh
Q 000146 478 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 526 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~ 526 (2052)
..+-+.+-.+++|.+..+ +.-|+.++.+.--++.+..++..
T Consensus 339 -----~vcN~evEsLIsd~Nr~I---styAITtLLKTGt~e~idrLv~~ 379 (898)
T COG5240 339 -----SVCNKEVESLISDENRTI---STYAITTLLKTGTEETIDRLVNL 379 (898)
T ss_pred -----eecChhHHHHhhcccccc---hHHHHHHHHHcCchhhHHHHHHH
Confidence 223344556667777655 45555555555445555554443
No 137
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=87.81 E-value=56 Score=44.83 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHH
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTT 1017 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~ll~~l~D~k--~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~ 1017 (2052)
......++.+++.+.. .+.++..++. .++|-+.+.|.... ..+.-.+.-.+++++..-. -..+++.+..
T Consensus 505 ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~ 583 (708)
T PF05804_consen 505 EEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIE 583 (708)
T ss_pred HHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHH
Confidence 3333334433333332 1445666664 47777777775432 2344444455555543211 1245667777
Q ss_pred HHhcCccChhHHHHHHHHHHHHhccCCCCCch---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1018 ~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.|..+..+-+.=..++-.+...+.+-.....+ .++..-++..+.|+|++||+.+..||..++.+=.
T Consensus 584 LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 584 LLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 77654322333333333333344332211111 3344558889999999999999999998876543
No 138
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.61 E-value=3 Score=43.99 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 981 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll 981 (2052)
+|.+|-.=--.+++|.++... .++.+.+++..|.+||+|.+..|..-+|++|..++......|...++.-...|-
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 344444333445566655542 223468999999999999999999999999999999988888877666554433
Q ss_pred HHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000146 982 KCL---G--------DNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 982 ~~l---~--------D~k~~VR~aa~~aL~~i~~ 1004 (2052)
.+. + +....||.+|.+++..+..
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 322 2 2455799999998888764
No 139
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=86.90 E-value=1.6 Score=57.34 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=79.4
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.|-..++|.|+..|+-....||--+..=++.++.+.+ .-.+.|++.+..++.+.|+.+|..|+..+..++....+..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 4778899999999999999999888888888877611 12467899999999999999999999999988876655433
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
. .+++..+.+.-.|.++.+|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 2 334444444445555555555555554444
No 140
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=29 Score=50.08 Aligned_cols=260 Identities=10% Similarity=0.065 Sum_probs=144.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC-CCCCCCCC
Q 000146 807 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS-SGGSDGLP 885 (2052)
Q Consensus 807 L~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~-~~~~d~lp 885 (2052)
|.|+|.+||--..-|+.++.+...|.. +|-...-..+.+.+...|........|--.|..--=....-.- --..+...
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 899999999999999999999887752 1111111123344445555443322111111000000000000 00001111
Q ss_pred cccccccccHHHHhhcCC-------CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHH
Q 000146 886 REDISGKFTPTLVKSLES-------PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 958 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d-------~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l 958 (2052)
..| +..+++..+-| .+|-. -++-+..++.+. ..+ -.+++..|..-|...+.+....|..+-
T Consensus 138 ~~e----~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~-d~v----~~e~L~~ll~~lv~~~~~~~~~a~~la 205 (1266)
T KOG1525|consen 138 CQE----LVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE-DTV----QSELLDVLLENLVKPGRDTIKEADKLA 205 (1266)
T ss_pred hHH----HHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh-ccc----hHHHHHHHHHHhccCCCCccHHHHHHH
Confidence 111 22233332211 13433 333333344332 111 256777777767666677777777777
Q ss_pred HHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHH
Q 000146 959 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 959 ~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
..++..++...++....++..-+..-.-....++....+-+-.+....+ +-.++|.|..-|.+. +-+.|..+.+.+
T Consensus 206 ~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 206 SDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QEEVRLKAVKLV 283 (1266)
T ss_pred HHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHH
Confidence 7777777777776666666554444333444555555555555554433 456777777777655 478999999999
Q ss_pred HHHhccCCC--CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1037 SKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1037 ~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
.+.|..... .....++....+..+.|.+.+||-+..++...+...
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 988865433 223566777788889999999999998877655433
No 141
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=1.1e+02 Score=41.47 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHhhhchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHh---
Q 000146 719 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDF--- 788 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~K---~r~~a~e~L~~l~E~~~~~~V---l~~L~~~l~-~~KnpKv~~e~L~~L~~~i~~f--- 788 (2052)
..++..++.|++++...- -|..|.-.|.+++..+..... +..++..+. +-.+|.....+|..+.-++..=
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 356667777777776643 255666666666665443211 111111111 1234444444444444433210
Q ss_pred ------------CCC----CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000146 789 ------------GVS----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 839 (2052)
Q Consensus 789 ------------G~~----~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~ 839 (2052)
|.- -+.-++.|..+... +++-|=.||..|++++..+-.+-|..++..+-.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000 01123455666666 788899999999999999999999887776633
No 142
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.34 E-value=9.6 Score=46.95 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=84.2
Q ss_pred hhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 404 RFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 404 ~~llp~LL-~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
..++..|+ ..+....+.||+.+..||.-++-.....-.+.+.-+...++.....+|..+++.+..++..++...+....
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 36666655 45566778999999999998876411223455666667776668899999999999999888755443322
Q ss_pred --------hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 483 --------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 483 --------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
..+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999988743
No 143
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=12 Score=45.50 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=114.1
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+.+.|...+.+.+-|++..|--.|+.+.... ..+.+-.-..-++.|.+.|.|+-..++....-||..++..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4567888888888888888877777665431 111110001123455666788888888888999988887655442111
Q ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 SKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~-k~~VR~aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
=..|+.+++..|.-. +..+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. ..++.++-..++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 223666677666432 23367777788887776331 1 123456667776653 4566666666654322211
Q ss_pred CCCch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000146 1045 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1045 ~~~~~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
....+ ..+++.++..+.|.+.+||-.|.++|.-|...+
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111 235556788889999999999999997766443
No 144
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=3 Score=52.85 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=77.2
Q ss_pred hcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 000146 373 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 451 (2052)
Q Consensus 373 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L 451 (2052)
++|.|--|++.|.-+||.+|-.= ...++..++.+.++ ++.||-...-+|.-.|.. ++....++.+..-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 55777777777777666654221 13566667777654 677887777777766654 44444444444445
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChH
Q 000146 452 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 452 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
.+-|--||+.++-.+..++.+|.+. +.+.++.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 6778888888888888877777654 4555677777788888777764
No 145
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.70 E-value=86 Score=41.70 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=75.4
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCccChhHHHHHHHHHHHHhc
Q 000146 966 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1041 (2052)
Q Consensus 966 g~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--~~ll~--~l~~~L~~~k~np~~R~~~l~~L~~~l~ 1041 (2052)
...+++.+..++|+++.+++.....||..+.+.+..+-..+.. .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999887753 22344 5666676654458899999999988877
Q ss_pred cCCCCCchhhhHHHHHhhcCCCC
Q 000146 1042 GLSGFPDAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 1042 ~~~~~~~~~~ll~pl~~~L~D~~ 1064 (2052)
..+.. +-..+++.++.++....
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKP 115 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCc
Confidence 76432 34567777888887443
No 146
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=84.65 E-value=6.6 Score=41.02 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhh--hHHHHHHH----Hh--
Q 000146 343 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----KL-- 414 (2052)
Q Consensus 343 eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~--~llp~LL~----kl-- 414 (2052)
..+.+|..++... +..+.++++.|.++|.+.|..++..|+.++..+.+--+..|..++. .++-.++. ..
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566676666432 3557899999999999999999999999999999999988876543 23333322 11
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000146 415 KEKKPTVAESLTQTLQAMH 433 (2052)
Q Consensus 415 kdkK~~V~~aa~~aL~ai~ 433 (2052)
++....||+.+...+..+.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2335678887777776653
No 147
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.52 E-value=12 Score=40.61 Aligned_cols=96 Identities=26% Similarity=0.401 Sum_probs=70.8
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|. ++..|..+++.. +..-.+.+++|+++|+..|++++..|+.++..+.+--|..|... ...++..|
T Consensus 18 ~~~~Dw~----~~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HH----HHHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 4556784 344455555432 23347899999999999999999999999999999999888654 34677777
Q ss_pred HHHhccCcH-H---HHHHHHHHHHHHHHh
Q 000146 411 LEKLKEKKP-T---VAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkdkK~-~---V~~aa~~aL~ai~~~ 435 (2052)
...++.+.. . |++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 776666543 2 899999999988875
No 148
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.13 E-value=30 Score=44.66 Aligned_cols=176 Identities=19% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
++..+.+.+.....+|+.-.|+.|..+....|+-=+.....++-.|.+++-|.-+.||-.|..||..+-.-.-..=.++.
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~ 171 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIV 171 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHH
Confidence 34444454554456678888899888888777643455667788888888999999998888887776553111123444
Q ss_pred HHHHHHhh-cCChHHHHHHHHHHHH-------HHHhcCh------h-HHHHhhhhH-----------HHHHHHhhcCCCh
Q 000146 445 EDVKTSVK-NKVPLVRSLTLNWVTF-------CIETSSK------A-AVLKVHKDY-----------VPICMECLNDGTP 498 (2052)
Q Consensus 445 ~~l~~~L~-~Knp~vR~~~l~~L~~-------~l~~~~~------~-~l~~~l~~l-----------~p~l~k~l~Ds~~ 498 (2052)
..+...++ +.+..||..++.-+.. +++.+-. . ....+++.+ +-.+..+++|..-
T Consensus 172 n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~ 251 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREF 251 (885)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhh
Confidence 44444555 4456888877654431 1222100 0 011111111 1145678899999
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHh
Q 000146 499 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~ 540 (2052)
.||.++..+++.-+..--+-.+-.+++.||-.+++-....++
T Consensus 252 sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 252 SVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999987776655555677888888776654343333
No 149
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=83.24 E-value=10 Score=46.63 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=114.9
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 439 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~ 439 (2052)
.|..=....|-..+.-+..+|.-.-++.++..--.|++.+.+..+.++..+|--+.|....+.+.+...++.+... .+
T Consensus 93 ~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~ 170 (307)
T PF04118_consen 93 QDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VG 170 (307)
T ss_pred hhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cC
Confidence 3444455667777778888889888999998887888888899999999999999998999999999999999875 56
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 440 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 440 l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
-+-+...+...+- .+|.+|..++.|+.+-+.... ...+.....-++.++..+++|.+--|+..+.+.+
T Consensus 171 ~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 171 DKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL 249 (307)
T ss_pred hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5667777766554 679999999999999876533 1111122355889999999999999987776665
Q ss_pred H
Q 000146 509 A 509 (2052)
Q Consensus 509 ~ 509 (2052)
-
T Consensus 250 l 250 (307)
T PF04118_consen 250 L 250 (307)
T ss_pred H
Confidence 4
No 150
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=19 Score=44.95 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=86.6
Q ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCH
Q 000146 366 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNL 440 (2052)
Q Consensus 366 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l 440 (2052)
+..|...++.-|..|+..|+.-|.++-..--.....+...+++.+.+..-|....||++...+++.++-..| ...
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 344555667888888999988888776652122334666788888888999999999999999999765423 223
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
.-+++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 5567788889999999999999999999999987653
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.93 E-value=16 Score=50.86 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHh---c-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc
Q 000146 362 FTEVCRTLKKLI---T-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG 436 (2052)
Q Consensus 362 y~~l~~~L~k~l---~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~ 436 (2052)
.+.+.+.+.+.+ + -+|+.+...|--|++.|.-- ... |...-+|.++.-+ |-+.+.||..+..++.-+.-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~---fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE---FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH---HHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 445555555554 2 55677888888887766532 222 3444455555555 3567888887777776665421
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 437 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 437 ~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
.+-++..-+.+..-|.+-++.||..|+..|..++-+. ..+ ++-.++.+..|+.|.++++|+-|..-|-.+...
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 3346777888999999999999999999999888642 222 255678899999999999999999777666543
No 152
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.90 E-value=25 Score=45.54 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc-hHHHHHHHHHHHHHHH---HHh-Ch---
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVA---SAM-GP--- 967 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~~~Al~~l~~la---~al-g~--- 967 (2052)
++.+.+.+.+-..|++||+.|+. ...++.|++.|...+.+. ..+|++.-+..|..+. .++ ..
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455666888999999998852 123588999998888664 3444444444333333 333 21
Q ss_pred hhHHhhhHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCccChhHHHH
Q 000146 968 AVEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKD 1031 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D----------~k~~VR~aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~k~np~~R~~ 1031 (2052)
.+++|+..++|.++.|+-. +.=.+|+-|...+..++.+.+ . ..++..+..++.+.+........
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3789999999999998853 344689999999999998875 2 34555566666554334556677
Q ss_pred HHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCH---HHHHHHHHHHHHHHHHcCh
Q 000146 1032 LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSS---DVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1032 ~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~---dVRkaA~~~L~~l~~~~G~ 1084 (2052)
++..|..+-..... .+.+.....-+-..+.+.+. -....|..+...|..+...
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77666643221111 12223222223333443332 2356677777777766654
No 153
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=82.81 E-value=7 Score=43.63 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHhhcCChHHH
Q 000146 401 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKAGC---LNLVDVVEDVKTSVKNKVPLVR 459 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK------------------~~V~~aa~~aL~ai~~~~~---~~l~~ll~~l~~~L~~Knp~vR 459 (2052)
++...++|.++..++-++ -.+|.+|.+|+.+++.. | ..+..+++.+..|+++ ...+|
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~-~~~~~~~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDT-CLSRIDISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHS-TCSSS-HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHhhcCC-cHHHH
Confidence 456677777776665543 35999999999999987 4 4578889999999999 99999
Q ss_pred HHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc------------CCChHHHHHHHHHHHHHHHHh
Q 000146 460 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN------------DGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 460 ~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~------------Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.-|...|.++...++ ..+...++.+++.+.+.|+ |...+.-.++.+++..+...+
T Consensus 83 ~L~~~~l~kl~~~~p-~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 83 MLCHLMLSKLAQLAP-EEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHS-H-HHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999877654 4455668889998888883 223344455555555554444
No 154
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.76 E-value=6.8 Score=51.09 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=102.3
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHhChhh-----HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---
Q 000146 940 RGRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH--- 1007 (2052)
Q Consensus 940 ~~rL~DsN~~V~~~Al~~l~~la~alg~~~-----~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~----~~--- 1007 (2052)
-.-|.-.|.+|+..|+.++-.+..-.|++. +..+..=.--+.+.|.|.-+.||..|...+..+... .+
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344567899999999999888887777764 344444455677889999999999998887766543 33
Q ss_pred chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1008 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1008 l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+..++..|.+-+.... ..++|..+++.|...+.+-...+-+..+++.+--.|.|.+..||-|+...|..+-.+
T Consensus 260 ~~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3445555666665443 368999999999877665333444555666677788999999999999988766543
No 155
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.68 E-value=2e+02 Score=43.75 Aligned_cols=294 Identities=11% Similarity=0.090 Sum_probs=154.3
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccch----HH-HHHHHHHhcCCCC-cccHHHHHHHHHHHHHHHHHHcCCC-
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ----SV-EILVRLVCMLPGW-SEKNVQVQQQVIEVINYLAATATKF- 716 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~----~~-~~Lv~~L~~~pg~-~DsN~qV~~~~Le~l~~l~~~~~~~- 716 (2052)
.++....+.+-..++-|+..|.++....-+.+. .. ..+++-|... + +-.+..|.+.+++++..++......
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i--m~~s~~~eVrE~ILeCv~qmI~s~~~nI 1218 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV--MRKSNAVEIRELIIRCVSQMVLSRVNNV 1218 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 344444566667788888877655433111110 11 1222322110 1 2345578888888888877654332
Q ss_pred --chhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhCh------hHH----HHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 717 --PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP------GFI----FERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 717 --~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~------~~V----l~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
+++.+..++..... --+..+-..|.+++..++..+-. .-. +..+.....+..++++-..++..|..+
T Consensus 1219 kSGWktIF~VLs~aa~-d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAY-DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hcCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 34444444443321 11123456677777666543111 122 333334443344577777777777655
Q ss_pred HHHh--C---C---------------------CC----CC----hH---hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 785 VEDF--G---V---------------------SH----LK----LK---DLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 785 i~~f--G---~---------------------~~----l~----~k---~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
...+ | . .. .+ .. +++.-+.++ ..+..++||..|+..|-.+..
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSEL-SFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHH
Confidence 4333 1 0 00 00 01 122223344 457899999999999988888
Q ss_pred hhChhhHh-----hhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC
Q 000146 828 FVGPDIKG-----FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 902 (2052)
Q Consensus 828 ~~G~~l~~-----~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~ 902 (2052)
..|..|.. .+..+--.+...+...++......+ +.+.+. .+. ...+
T Consensus 1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~--~~~~~~------------~~~---------------~~~e 1427 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEP--EGQGVD------------GDQ---------------GELD 1427 (1780)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc------------ccc---------------cchh
Confidence 88876543 1233333333334333221110000 000000 000 0112
Q ss_pred CCCh--HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHH
Q 000146 903 SPDW--KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 971 (2052)
Q Consensus 903 d~~W--k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~ 971 (2052)
.+.| ..-..|+..+-.+...--..|.+ .+.+++..|...+...|..+...++.|+..|....|..|..
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 3458 34566777777776532122222 35677777778888999999999999999999999998864
No 156
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.45 E-value=22 Score=38.62 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcC------CChHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 510 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D------s~~~VR~aA~~~l~~ 510 (2052)
.+..+.+..|..-++++||.+-..++..|..|+++|+...-... -+.++..+++++.+ +++.||+...+.+-.
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 34556666677778999999999999999999999986532221 25677778888753 689999999999988
Q ss_pred HHHHhCC
Q 000146 511 IAKSVGM 517 (2052)
Q Consensus 511 l~~~~Ge 517 (2052)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8887763
No 157
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=2.2e+02 Score=39.35 Aligned_cols=473 Identities=12% Similarity=0.108 Sum_probs=221.3
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHh-hccCCCCchhhhhhcccccccccchhhHhh-hhcccccccccccccchhhhhhch
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALC-DSITDPKDNRIRELGQFSFIVSDLTFVWIR-IEHCGCEMMRCRFTSIYSFVLMLG 93 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2052)
..+...||.|--|..-|-.+.... .+..-+.+..|..| -+|....++. .+...+-.+-|-.|.+..++....
T Consensus 391 ~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W------~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~ 464 (982)
T KOG2022|consen 391 INETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSW------SSDSREQFESYRKDISDLLMSSYSILGDGLLDFLI 464 (982)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccC------CcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346678899999988888877654 33222222233322 0000000000 000000011122334445555556
Q ss_pred hHHHHHhccCc--HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC---C--ChhHHHHHHHHHHHHHhh--hh
Q 000146 94 PLFKKTVADSN--APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT---G--RPKTVEKAQAVFMLWVEL--EA 164 (2052)
Q Consensus 94 ~l~~k~v~DsN--~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~---~--r~~tk~~A~~~~l~~~e~--~~ 164 (2052)
+-+.++++|+- +..-+.--.|+..|-..+.. .+.....+++.+++-+.. + ++++-.-+.+.+-.+.+- +.
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~-~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~ 543 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEY-LGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH 543 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC
Confidence 66777777665 44444444455555444432 333445778888887654 3 666666677776666554 33
Q ss_pred h---hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhC--CCChhHHHHHHHHHHHHHHhh
Q 000146 165 V---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFD--HQDQNVRASSKGLTLELCRWI 238 (2052)
Q Consensus 165 ~---~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~--~~dk~VR~~a~~l~vely~~l 238 (2052)
| ...++.|..|+. |+|.-..++..|..+.+.=-...-| ...++..+-.++- +.-..+|...+..++-+...+
T Consensus 544 P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~ 621 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL 621 (982)
T ss_pred CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc
Confidence 3 466777888874 6666666666666555442221111 2234444444443 233467777766666665555
Q ss_pred CCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCC-CCCCCCCCCCCCCCCCc
Q 000146 239 GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE-STADVPPEIDEYELVDP 317 (2052)
Q Consensus 239 G~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iD~~dl~~~ 317 (2052)
-++.+-..+ ..|-...+.+|+.-++ ++-.-|.+-.|..-..-...+- .... ..+.+. +.+.+.....||--.++
T Consensus 622 ~pEe~~kyl-~~lin~il~qle~~l~--~~i~~~e~~l~~~~~l~~iS~L-ftSL-~~~~~~~d~d~~~~~~~~~qq~~i 696 (982)
T KOG2022|consen 622 KPEEIPKYL-MKLINPILSQLEINLA--PGIDDQENHLRIAFQLNTISAL-FTSL-INKKDIIDTDQPEQREEPFQQFPI 696 (982)
T ss_pred cHHhHHHHH-HHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHH-Hhcc-CCCCccccccchhhhccccccCCH
Confidence 432221222 1222222333433321 1112233322221110000000 0000 000000 01111111112211111
Q ss_pred ccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHh
Q 000146 318 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGL 395 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L 395 (2052)
+.++ . .++..+.+++. -.+..|+..+|...+.=.+.+
T Consensus 697 l~v~---------------------------~--------------k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~ 735 (982)
T KOG2022|consen 697 LQVL---------------------------Q--------------KAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSL 735 (982)
T ss_pred HHHH---------------------------H--------------HHHHHHHHHHHHHhcchhHHHHHHHHHHhccccc
Confidence 1111 1 12222333222 223445777766655444555
Q ss_pred hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHH-HHHHHHh-cCCCH-----HHHHHHHHHHhh----cCChHHHHHHH
Q 000146 396 RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQT-LQAMHKA-GCLNL-----VDVVEDVKTSVK----NKVPLVRSLTL 463 (2052)
Q Consensus 396 ~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~a-L~ai~~~-~~~~l-----~~ll~~l~~~L~----~Knp~vR~~~l 463 (2052)
++.| +|++..+.+-+.. +-..-..+......+ +...+.. .|.++ ...++..+.... .-+|.+-.+..
T Consensus 736 ~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~ 814 (982)
T KOG2022|consen 736 LTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLI 814 (982)
T ss_pred cccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Confidence 6668 7788888777776 655554444443333 3333322 23332 111222222222 23578888889
Q ss_pred HHHHHHHHhcChhHHH--Hhhh-hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHh
Q 000146 464 NWVTFCIETSSKAAVL--KVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540 (2052)
Q Consensus 464 ~~L~~~l~~~~~~~l~--~~l~-~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~ 540 (2052)
.|+...++..+.-... .... -+.+....+|+-+.+..-.+|.+-+..+...-++.......+-........|...+.
T Consensus 815 ~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~ 894 (982)
T KOG2022|consen 815 GFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMR 894 (982)
T ss_pred HHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHH
Confidence 9999999887642111 2223 355577888888877655566666666766666644444333333333344444444
Q ss_pred cCCC
Q 000146 541 GSGG 544 (2052)
Q Consensus 541 ~~~~ 544 (2052)
+.||
T Consensus 895 ~vgg 898 (982)
T KOG2022|consen 895 GVGG 898 (982)
T ss_pred HhcC
Confidence 5444
No 158
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.20 E-value=36 Score=51.13 Aligned_cols=182 Identities=13% Similarity=0.155 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHH
Q 000146 337 KWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 410 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~~----~~ki~~~dy-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 410 (2052)
+=..+.-|++.|++++- ...+..-.+ .++++-|..++. ..+..|....++|+.+|...-+..+..-++.++..+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 44567778887777652 121221222 378888888777 667789999999999999888777877888888888
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHhc--C------CCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhc---C----
Q 000146 411 LEKLKEKKPTVAESLTQTLQAMHKAG--C------LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETS---S---- 474 (2052)
Q Consensus 411 L~klkdkK~~V~~aa~~aL~ai~~~~--~------~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~---~---- 474 (2052)
--.++++.+.+++.+.+++..++... + ..+.+++.-+....+.+ +..+=..++.+|..|.... +
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 88889999999999999999887641 1 12334444444444444 3555566666666542111 0
Q ss_pred ----------------------------hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 475 ----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 475 ----------------------------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
......+.=.++-.+..+..|..++||..|.+.|-.+....|..
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00001122223444556678999999999999998888888854
No 159
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.20 E-value=6.5 Score=41.52 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh-----------cCCChHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------NDGTPEVRDAAFS 506 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l-----------~Ds~~~VR~aA~~ 506 (2052)
....++++.|..-|++|+|.||.-+|..|..++...+. .|...+..-...+..|. +|....||.+|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 34567888888888999999999999999988876543 34433333333333333 3567799999999
Q ss_pred HHHHHH
Q 000146 507 VLAAIA 512 (2052)
Q Consensus 507 ~l~~l~ 512 (2052)
++..|.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
No 160
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.99 E-value=43 Score=43.41 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=109.8
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcC--CC----CcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 642 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PG----WSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 642 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~--pg----~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
=.++.+.|.+.+-..|.+|++.|.. |.-.+.++.+|... -+ ..-.|...+-..++++..|..+-.-
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3678888888999999999999872 12234444444221 11 2246788888888888888887333
Q ss_pred CchhhHHHHHHHHHHhhhch----h--------hhHHHHHHHHHHHhhhChhH------HHHHHHHHHhhC-CCHHHHHH
Q 000146 716 FPKKCVVLCLLGISERVADI----K--------TRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDH-KNPKVLSE 776 (2052)
Q Consensus 716 ~~~~~~~~il~~LveKlgd~----K--------~r~~a~e~L~~l~E~~~~~~------Vl~~L~~~l~~~-KnpKv~~e 776 (2052)
|...++..++|.++..+... . +|+-|.+.+..+|..++..+ |+..+.+.+.+. +.+-.+-+
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 67777877777766554332 2 69999999999999887543 444444444444 55566667
Q ss_pred HHHHHHHHHHHhCCCCC------ChHhHHHHHHhhCCCC---CcHHHHHHHHHHHHHHHHhhCh
Q 000146 777 GILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQS---SAAATRNATIKLLGALHKFVGP 831 (2052)
Q Consensus 777 ~L~~L~~~i~~fG~~~l------~~k~li~~l~~~gL~~---~n~~VR~aA~~ll~~Ly~~~G~ 831 (2052)
++..|..+ |...+ +++.....+... +.. +|...+..|-.+.+.|+++.++
T Consensus 361 ai~gL~~l----g~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSEL----GHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHh----hhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77666544 33221 344444444433 332 2334466666666666665543
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.93 E-value=15 Score=48.45 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCCh
Q 000146 377 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 456 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp 456 (2052)
+..+-..|++.|... -+.|......-+-++++.+.|....||..|...|-.+|......+..+.+.|..-|+...+
T Consensus 35 ~~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 355666676666554 4567778899999999999999999999999999999885234578888888888998888
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 457 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 457 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.....+-+.|..++...++..+...++.|.+. ...+..||+.+.+.+..-+.-++.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 88888888888888887777775555555432 245678999988887655555553
No 162
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.64 E-value=21 Score=38.41 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcC---CChHHHHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~~l~~l~~ 513 (2052)
.+..+.+..|..-++++||.+...++..|..|+.+++......+. +.++..+.+++.. .++.||..+.+.+.....
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466778888888899999999999999999999999764322222 3556667777765 588999999999999999
Q ss_pred HhCCh
Q 000146 514 SVGMR 518 (2052)
Q Consensus 514 ~~Ge~ 518 (2052)
.++..
T Consensus 113 ~f~~~ 117 (133)
T cd03561 113 SFGGH 117 (133)
T ss_pred HhcCC
Confidence 98863
No 163
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.37 E-value=9.9 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 454 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 454 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+...-|..++.-+..+++. ....+....+.++-.|..+++.. ++|+.|++|...+.+.+++..+.++++..
T Consensus 27 ~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4458899999999999984 34445566677777777777666 99999999999999999998888887764
No 164
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.34 E-value=2e+02 Score=38.29 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=80.5
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHh
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~--~~~~l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~ 472 (2052)
..|++....++|++|.++.-.-..||..+.+.+..+-.- ....+.-=++.|+...++. ++.+|.-++.|+..-+.+
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 458888999999999999999999999999999988765 1122222234555555533 589999999999999988
Q ss_pred cChhHHHHhhhhHHHHHHHhhcCCC---hHHHHHHHHHHHHHHHHhC
Q 000146 473 SSKAAVLKVHKDYVPICMECLNDGT---PEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 473 ~~~~~l~~~l~~l~p~l~k~l~Ds~---~~VR~aA~~~l~~l~~~~G 516 (2052)
.+...- .+++|.+++++.... ..........+..++++..
T Consensus 95 l~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 95 LDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred CCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 765543 567788888886322 2333334444444445543
No 165
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.29 E-value=22 Score=38.73 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHh
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+..+.+..|..-++++||.+...++..|..|+++|+...... .-+.++..+.+++. ..++.||+...+.+......+
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4556677777778889999999999999999999987542221 12556777777775 688899999999999999888
Q ss_pred CCh
Q 000146 516 GMR 518 (2052)
Q Consensus 516 Ge~ 518 (2052)
+.+
T Consensus 117 ~~~ 119 (142)
T cd03569 117 RNK 119 (142)
T ss_pred CCC
Confidence 754
No 166
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.97 E-value=13 Score=49.98 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=120.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~--a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
.+.+..+.|+.--+|-.|+..+..+++. +...+. ...++.++...|.|-+.-|-..|++-+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 3566778888888999999999999982 222222 245788999999999999999998877777755 5
Q ss_pred hhHHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhcc
Q 000146 973 SKGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1042 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~-~---VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~ 1042 (2052)
-+.++|.+.+-+...|+ . .|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 56788888885544332 2 34444467777777776 233333344444332 123487777777665544
Q ss_pred CCC--CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChhH
Q 000146 1043 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1086 (2052)
Q Consensus 1043 ~~~--~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~e~ 1086 (2052)
... +..+.+.+..++... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223334444444433 69999999999999999999999754
No 167
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.86 E-value=34 Score=38.29 Aligned_cols=129 Identities=10% Similarity=0.099 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc-
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG- 436 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~- 436 (2052)
...+.++..+...+.+.+..-+..++..++.++..- ..-|..+....+..|+..+.... +.+.+++..++..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356677777777888888888899999999998876 34577788888888888887644 678899999999999871
Q ss_pred ----------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000146 437 ----------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491 (2052)
Q Consensus 437 ----------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 491 (2052)
...+..+++.++.-++. ......++..|..++..++.. +-++...+-..+..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt-~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT-FRPFANKIESALLS 162 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc-ccchHHHHHHHHHH
Confidence 12234444444443333 677788999999999887643 33344444444443
No 168
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.68 E-value=7 Score=48.68 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=93.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSS 973 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~ 973 (2052)
.+++.+++--|-++|++|+..|.+++.. ++.+.-..+.+++.-+..++.|-...|+....+++..++..+++. ..++.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 5788899999999999999999999975 344433346788899999999999999999999999988777665 47788
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
..+++-+...+...-+.||.-+...+..++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8888888888888888888888888888888776
No 169
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.51 E-value=12 Score=41.77 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhChh---
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPA--- 968 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg~~--- 968 (2052)
+..-+.+.+.++++..|-.|+..+..+++++...+--..++..+..|...|.. ....+...++.++..|...++..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 33456677899999999999999999998753444433457888888888854 45778889999999998776532
Q ss_pred ----hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000146 969 ----VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 969 ----~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~ 1006 (2052)
..+++..+++.+++.+.+ ..+...+..+|..++.+.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 235566666666666665 445555666666665543
No 170
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=80.36 E-value=15 Score=40.56 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=60.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhhh--------ccchH---HH------HHHHHH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 956 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~aL~~rL--------~DsN~---~V------~~~Al~ 956 (2052)
+.+..+++.+=++|..|++.|..++.... ..+....|..++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46788999999999999999999997532 4555566888888887654 11111 22 233444
Q ss_pred HHHHHHHHhChhhH-HhhhHHHHHHHHHhCCCc
Q 000146 957 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 988 (2052)
Q Consensus 957 ~l~~la~alg~~~~-~~~~~llp~ll~~l~D~k 988 (2052)
++..++...-+.|. +.+..++..|++.+.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 44444444433443 456777777777777766
No 171
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=26 Score=50.56 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~--~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
...++.-++=..|..||++|..+++...... +-+......+.+++.|-+..|+....+.+..+..++++...||.+.+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3444555666788899999999885322221 23666777888888899999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------C-CCHHHHHHHH----------------HHHhhcCChHHHHH
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVEDV----------------KTSVKNKVPLVRSL 461 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------~-~~l~~ll~~l----------------~~~L~~Knp~vR~~ 461 (2052)
+|..+-..-|.-..|..+|.++....+... | ..+-.++.++ .+.+..|-+++...
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 999999999999899999988887766420 1 1122222222 12234566788888
Q ss_pred HHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 462 TLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 462 ~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
++..+...+...... .+. .-.+. --..+-+.+.+..+.+|.+..+++-.+.+.+-..
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 888888888543321 111 11122 1235667889999999999999998887766543
No 172
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=80.14 E-value=24 Score=42.40 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=104.9
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 405 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~--~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 405 (2052)
+.+.+.+.+-+.|..|+..|..++....-.. ..| +...+...+. ..|..+...++++|..|+. ..++...+..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~ 134 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLAN 134 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHh
Confidence 3445667777889889999988763211000 122 3333444444 5688888889999998863 3333444556
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh----
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK---- 475 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll-----~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~---- 475 (2052)
.+|.++..+......++..+..+|..+..+ ..-..+++ ..+..-++.+ +..+-..++.|+.++-....+
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 677888888777777888888888888765 11112222 2333334433 457777888888887554321
Q ss_pred --------hHHH---HhhhhHHHHHHHhhcCCChHHHHH
Q 000146 476 --------AAVL---KVHKDYVPICMECLNDGTPEVRDA 503 (2052)
Q Consensus 476 --------~~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 503 (2052)
..+. .-.+.+..-+..+..+++++||+.
T Consensus 214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1222 112557777778888999999875
No 173
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.11 E-value=8.4 Score=43.70 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=90.2
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHH---hChhh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 969 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~a---lg~~~ 969 (2052)
..+.|.++|.+.+.--|.-|-+.+.+++.....+|.|-. .+|+..|+.-|.-.|..|...+|++|+.|... .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999988888888999999998887678888875 99999999999999999999999999998864 46889
Q ss_pred HHhhhHHHHHHHHHhC------------CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000146 970 EKSSKGVLSDILKCLG------------DNKKHMRECTLTVLDAWLAAVHLDKM 1011 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~------------D~k~~VR~aa~~aL~~i~~~~~l~~l 1011 (2052)
-+|-++++|.+ +.++ |++..+-+-..++|..+-.+-|.+.+
T Consensus 194 VPfYRQlLp~~-n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAf 246 (262)
T KOG3961|consen 194 VPFYRQLLPVL-NTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAF 246 (262)
T ss_pred hhHHHHhhhhh-hhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccce
Confidence 99999999865 2332 33445555556666665555444443
No 174
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.10 E-value=2.4e+02 Score=38.45 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=56.5
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHH
Q 000146 726 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLID 800 (2052)
Q Consensus 726 ~~LveKlgd~K~r~~a~e~L~~l~E~~----~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~ 800 (2052)
..|.+-+-|--....+..+|..+..-. .|..-+..++..+ ---|..||+++...|.++. ..... ...+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 334444444444444444444444422 1333334444432 3467889999988876654 33322 234556
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 801 FCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 801 ~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
.++.+ +.|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 66775 99999999999998887776
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.07 E-value=22 Score=43.54 Aligned_cols=138 Identities=13% Similarity=0.206 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc----ch--hhhhhHHHHHHHHhc--------cCcHHHHHHH
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 425 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkK~~V~~aa 425 (2052)
..+.-+++.+...+.|....+...+|+|+..+...+... +. .+...+..++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 345677888889999999999999999999999866532 33 346777777777777 7778888999
Q ss_pred HHHHHHHHHhc--------CCCHHHHHHH-HHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 426 TQTLQAMHKAG--------CLNLVDVVED-VKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 426 ~~aL~ai~~~~--------~~~l~~ll~~-l~~~L~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
-.|+..++... ...+.+++-+ |+..+.+ + .+.++...+..+..++...+.. ..++++.++|.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 99999986630 1225555544 6666652 2 5899999999999988876543 458899999999999
Q ss_pred hcCCCh
Q 000146 493 LNDGTP 498 (2052)
Q Consensus 493 l~Ds~~ 498 (2052)
|.+.+.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 888753
No 176
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.99 E-value=27 Score=46.18 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCCHH
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLV 441 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~-~~~l~ 441 (2052)
.+.+.++..++.|..+.|+..|++.|-.+|+.-. .|+..+.-.|...|..-.+..++++..+|..++... ..+|.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4677888889999999999999999999887643 356666666777777777888999999999999851 12244
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH--Hhh-hhHHHHHHHhhcC
Q 000146 442 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL--KVH-KDYVPICMECLND 495 (2052)
Q Consensus 442 ~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~--~~l-~~l~p~l~k~l~D 495 (2052)
.++..|... ......+|..++.||..-+.......+. .-+ .-++..+.++|.|
T Consensus 134 ~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 134 GLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 444444321 2456789999999998777654433322 112 3466777888887
No 177
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.64 E-value=7.5 Score=39.04 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHh
Q 000146 444 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 523 (2052)
Q Consensus 444 l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~ 523 (2052)
++.+...+.+..+.+|...+..|.++++... ......+.++..+...+.|.++=|=-.|.+++..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455556677888999999999999998766 11223578899999999999999999999999999999987766554
Q ss_pred Hh
Q 000146 524 IE 525 (2052)
Q Consensus 524 l~ 525 (2052)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
No 178
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.43 E-value=39 Score=43.65 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=125.5
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~ 404 (2052)
.+.+.+.|.+=.||.-...-|..+- +.+..-+.-...+...|...+. ..+...+...+..++.+.+|+...+... ..
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~ 216 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQ 216 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 3445668999999987666666654 2222211112333444445554 5677789999999999999988666443 33
Q ss_pred hHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000146 405 FLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 483 (2052)
Q Consensus 405 ~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 483 (2052)
.+...|+-..+-+. ..-...+..|+..++.+...-...++..|+...---|++=..--+..+..+++..++..+.+...
T Consensus 217 fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~ 296 (409)
T PF01603_consen 217 FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMV 296 (409)
T ss_dssp HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44466666666665 34578899999999987333345677777776666666666677888889999888888888889
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhcc
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 528 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld 528 (2052)
.+...+.+|++..+-.|-+.|. ..+.+..+..++..-.
T Consensus 297 ~lf~~la~ci~S~h~qVAErAl-------~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 297 PLFKRLAKCISSPHFQVAERAL-------YFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHH-------GGGGSHHHHHHHHCTH
T ss_pred HHHHHHHHHhCCCCHHHHHHHH-------HHHCCHHHHHHHHhCh
Confidence 9999999999999999966665 3445554545554443
No 179
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=79.41 E-value=19 Score=43.99 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=92.3
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhh----hhh-hHHHHHHHHHhhcC---------CChhHHHHHHHHHHH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADA----GRY-AKEVCDAIAAKCLT---------GRPKTVEKAQAVFML 158 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~----~~~-~~~vi~~LieK~L~---------~r~~tk~~A~~~~l~ 158 (2052)
.+.+..++.|.......+|+.+|..|+++..... .++ ..+|+-..+.+|+. .-..+-..|..|++.
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 7777889999999999999999999999876522 233 34566555666664 123344568888887
Q ss_pred HHhhh----h------hhhHH-HHHHHHhhc--c--ChhhHHHHHHHHHHHHHHhCCCCc-ChHHHHhhhhhhhCCCC
Q 000146 159 WVELE----A------VDVFL-DVMEKAIKN--K--VAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQD 220 (2052)
Q Consensus 159 ~~e~~----~------~~~v~-e~Ll~~l~~--K--~PKvv~~~l~~L~~~l~~FG~~~i-~~k~il~~l~~ll~~~d 220 (2052)
++... + -+.++ +.|+.++.+ + +|+++...++.+..++...|...+ -++.+++.+-..+.+++
T Consensus 201 L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 201 LLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 75541 1 12333 446666544 3 699999999999999999999544 58888888888887765
No 180
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=1.2e+02 Score=37.81 Aligned_cols=176 Identities=11% Similarity=0.158 Sum_probs=109.1
Q ss_pred cccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc----chhhhh
Q 000146 333 VKATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FSGSSR 404 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~----~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~~~~~ 404 (2052)
..+.+-.+|.+|++.|..++.. ..+. ..+-+...+. .+++++..|+..|+.+|+..+.---+- ++.
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~--~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--- 165 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLI--SLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--- 165 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHh--hccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc---
Confidence 3567788899999999887732 2222 1233334444 888999999999999999988632211 121
Q ss_pred hHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhcChh
Q 000146 405 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 405 ~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l~~ll-----~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
..++.|+..+. +..-.++..+.-|+.+++.+.......++ ..|..+|+. ...+.|.-++.++..+++.....
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 15666777665 44456778888889988887222233332 345677776 56888899999999988765322
Q ss_pred H-HHHhhhhHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 477 A-VLKVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 477 ~-l~~~l~~l~p-~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
. +.. ....+ .+.....--+-+++.++..++-.+.....
T Consensus 246 ~d~~~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 246 EDIAS--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhHHH--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 1 111 11111 22223333445677777777666655544
No 181
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.58 E-value=97 Score=38.94 Aligned_cols=204 Identities=15% Similarity=0.076 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhC-hhhH
Q 000146 756 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG-PDIK 834 (2052)
Q Consensus 756 ~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G-~~l~ 834 (2052)
.+++.+.+.+.+..|..+....+..|..-+..++.. -.+.+++++.+ |+.+..+.||.+-+.+++.+....+ ....
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~--~~~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE--LPKKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC--CCHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 455556666656667776766666666666555332 23688999988 6999999999999999998876222 2345
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcc-cc-------c--c-cccc-CCCCCCCCCCCCcccccccccHHHHhhcC
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKK-TV-------R--A-SEST-SSVSSGGSDGLPREDISGKFTPTLVKSLE 902 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r-~~-------r--~-~~~~-~~~~~~~~d~lpr~dIs~~i~~~ll~~l~ 902 (2052)
.+...+-|.+.+.+++-+.+-. +.+.. .. - . ..+. ..............+-+-.+.+.++.++.
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~----~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPL----QSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC----CccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 6667777888888877665421 11110 00 0 0 0000 00000000000000111124567777743
Q ss_pred CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhChh
Q 000146 903 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPA 968 (2052)
Q Consensus 903 d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~~ 968 (2052)
+.+ +-.+.++.+..++.+....+....-..+-.++...+..+ ...|+..|+.++..+....+..
T Consensus 175 ~~~--d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEE--DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHh--HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 321 122344555555543322332221144567777777777 7889999999999888766544
No 182
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=77.93 E-value=21 Score=45.22 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 453 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 453 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
++.|-+|..++.|+..+-...++.. +..++|.+..+|.+++.-|+.-|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 6789999999999998666555443 478999999999999999999998764
No 183
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=76.94 E-value=29 Score=41.69 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000146 336 TKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 413 (2052)
Q Consensus 336 ~kWkeR~eaL~~L~~L~~~~ki~~--~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 413 (2052)
.+--.+..++-.+...+.-+--.. .+ ...+..+...+.+.++.|...|++++..++..-. ....++..++.+++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHHHHHHHHHHH
Confidence 455555666666655432110000 01 1234567778889999999999999998875432 223345556666665
Q ss_pred hcc--CcHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHH
Q 000146 414 LKE--KKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPI 488 (2052)
Q Consensus 414 lkd--kK~~V~~aa~~aL~ai~~~--~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~ 488 (2052)
+.. -+..++.++..+|..+... ...-+...+++++.-+...+..+|..++..|..+-+. + ......+ ......
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p-~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-P-DMTRELLSAQVLSS 179 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-H-HHHHHHHhccchhH
Confidence 433 3567888888888877432 0122556778888888888999999999998875442 1 1111111 234455
Q ss_pred HHHhhcCC-ChHHHHHHHHHHHHHHHHhCC
Q 000146 489 CMECLNDG-TPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 489 l~k~l~Ds-~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
++.+++.. ..++--.+...+.-|...++.
T Consensus 180 ~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 180 FLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 66666554 567766666666666666653
No 184
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.81 E-value=13 Score=45.78 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=63.0
Q ss_pred hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCc
Q 000146 932 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 932 ~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
-.+.+++|.+||+-.+..|+..||.++..++..+|+.|..- .+.|..-+...+. -..+.|+......+..|.+.+.-
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999998754 4556666666666 45566888888888888886643
Q ss_pred h
Q 000146 1009 D 1009 (2052)
Q Consensus 1009 ~ 1009 (2052)
+
T Consensus 123 D 123 (462)
T KOG2199|consen 123 D 123 (462)
T ss_pred C
Confidence 3
No 185
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=27 Score=46.41 Aligned_cols=153 Identities=17% Similarity=0.130 Sum_probs=109.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh-hccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 977 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r-L~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ll 977 (2052)
+.+.|++--.|..++-.+.---.. ..+ ...+.-|... ++|.|-.|++.|...|+.++-. . +..+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~G-----Tgn--nkair~lLh~aVsD~nDDVrRaAVialGFVl~~------d--p~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVG-----TGN--NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------D--PEQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhc-----cCc--hhhHHHhhcccccccchHHHHHHHHHheeeEec------C--hhhc
Confidence 445788888999988776432221 111 2344444444 6999999999999988876522 1 4557
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC--CCchhhhHH
Q 000146 978 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLK 1054 (2052)
Q Consensus 978 p~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--~~~~~~ll~ 1054 (2052)
|.+++.|.+ -+++||-.+.-+|+..+.-+|...-+..|-+...++ +..+|+.++-.++-.+-.+.. .+.+..+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 778888876 578999999999999888889888887766666655 468999998887766655544 345667777
Q ss_pred HHHhhcCCCCHHHH
Q 000146 1055 PASIAMTDKSSDVR 1068 (2052)
Q Consensus 1055 pl~~~L~D~~~dVR 1068 (2052)
-+.+.+.|++.|+-
T Consensus 669 ~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 669 QLEKVINDKHEDGM 682 (929)
T ss_pred HHHHHhhhhhhHHH
Confidence 78888888888753
No 186
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=76.50 E-value=2.6e+02 Score=37.92 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=71.0
Q ss_pred HHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-hCCCCCC----h-HhH
Q 000146 725 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED-FGVSHLK----L-KDL 798 (2052)
Q Consensus 725 l~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~-fG~~~l~----~-k~l 798 (2052)
+..+.+.-.|+-+|..|.+-+..+-+.-..-.++-+++-. ..+++-++--|++.|.+.+++ ++....+ + +.+
T Consensus 9 v~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~--~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv 86 (980)
T KOG2021|consen 9 VNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN--ETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSV 86 (980)
T ss_pred HHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 3334444455667777776666655433322233333322 348899999999999999975 4433222 1 457
Q ss_pred HHHHHhhCCCCC----cHHHHHHHHHHHHHHHHhhChhhHh-hhhh
Q 000146 799 IDFCKDTGLQSS----AAATRNATIKLLGALHKFVGPDIKG-FLAD 839 (2052)
Q Consensus 799 i~~l~~~gL~~~----n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~ 839 (2052)
+.|++-..+++. -+-+|..+..++..|+.+.-++.++ ||.|
T Consensus 87 ~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~d 132 (980)
T KOG2021|consen 87 TSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDD 132 (980)
T ss_pred HHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777764335665 4569999999999999888777653 4444
No 187
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.35 E-value=31 Score=37.16 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~ 514 (2052)
.+..+.+..|..-++++||.+...++..|..|+.+++...-.. .-+.++..+.+++.++.. .||+...+.+......
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 4566777778888899999999999999999999987643221 135577788888876554 4999999999999988
Q ss_pred hCCh
Q 000146 515 VGMR 518 (2052)
Q Consensus 515 ~Ge~ 518 (2052)
++++
T Consensus 113 f~~~ 116 (133)
T smart00288 113 FKND 116 (133)
T ss_pred HcCC
Confidence 8643
No 188
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=76.14 E-value=24 Score=43.95 Aligned_cols=215 Identities=13% Similarity=0.128 Sum_probs=124.9
Q ss_pred hccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccch---HHHHH---HHHHhcCCCCcccHHHHHHHHHHHHHHHHH
Q 000146 638 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ---SVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAA 711 (2052)
Q Consensus 638 ~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~---~~~~L---v~~L~~~pg~~DsN~qV~~~~Le~l~~l~~ 711 (2052)
.+.++.-+......+.|-.|..++..+.+.+..+.-... ..+.+ +..++. .++|-...+.++.|+.+.-++.
T Consensus 391 ddslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiRe--aIddisaekfqasfelikciia 468 (666)
T KOG4825|consen 391 DDSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIRE--AIDDISAEKFQASFELIKCIIA 468 (666)
T ss_pred hhhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777788888888888887777654321111 11111 001110 1355666778888888887776
Q ss_pred Hc---CCCch----hhHHHHHHHHHHhhhch--hhhHHHHHHHH---HHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHH
Q 000146 712 TA---TKFPK----KCVVLCLLGISERVADI--KTRAHAMKCLT---TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 779 (2052)
Q Consensus 712 ~~---~~~~~----~~~~~il~~LveKlgd~--K~r~~a~e~L~---~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~ 779 (2052)
.+ ..|+. .|+..-++.+.-.-||. +++-.|.+.+. .+.+.-..+.|-+.|...+..+|.|-+...-..
T Consensus 469 hlikehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqgg 548 (666)
T KOG4825|consen 469 HLIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGG 548 (666)
T ss_pred HHcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhH
Confidence 54 22443 24444455555566673 45655555444 444555556666777777767888887766666
Q ss_pred HHHHHHHHhCCC--CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHH--------HHHHHH
Q 000146 780 WMVSAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA--------LLSALD 849 (2052)
Q Consensus 780 ~L~~~i~~fG~~--~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~--------ll~~Le 849 (2052)
.|..++...|.. ++-......+-... ..+.--++|.+|...++.+|+.. ..+...++|.|. +.+.+-
T Consensus 549 kLarllkdlgkGragfiediakkfgVpa-eehglndkreaafaiicdmtrdh--QarsIgedLmpddskngriilvksef 625 (666)
T KOG4825|consen 549 KLARLLKDLGKGRAGFIEDIAKKFGVPA-EEHGLNDKREAAFAIICDMTRDH--QARSIGEDLMPDDSKNGRIILVKSEF 625 (666)
T ss_pred HHHHHHHhcCCCccchhHHHHHHhCCCc-cccchhHHHHhHhhhhhhhcccH--HHHHHHhhcCcccccCCceEEeHHHh
Confidence 777778777654 22111122222233 56666789999999999999754 334444444443 344445
Q ss_pred HHHhcCCC
Q 000146 850 AEYEKNPF 857 (2052)
Q Consensus 850 ~efeK~~~ 857 (2052)
+.|.++.+
T Consensus 626 EgFAkiDg 633 (666)
T KOG4825|consen 626 EGFAKIDG 633 (666)
T ss_pred hhhhhccC
Confidence 55666654
No 189
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.66 E-value=3.1e+02 Score=39.08 Aligned_cols=132 Identities=14% Similarity=0.003 Sum_probs=87.9
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH
Q 000146 938 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP 1013 (2052)
Q Consensus 938 aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~----l~~ll~ 1013 (2052)
.+..|..|....++..++.-|+..+.....-|-. ..++--+=-.|.|++..||..+..+|..++.+-. +..+..
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts 368 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS 368 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3457889999999999999888888777766532 2233334456789999999999999999999832 222222
Q ss_pred ----HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1014 ----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1014 ----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
-|.+.. +.-.++.+|..-+..+...... .--...-+.+++.++-|.+..||.+|..-+
T Consensus 369 RFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~~---g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 369 RFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSSS---GLLSDKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred HHHHHHHHHH-hhhcchhHHHHHHHHHHHHhcc---cccChhHHHHHHHHHhccCcchHHHHHHHH
Confidence 233333 2223567776655444322111 111234577899999999999999987554
No 190
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.06 E-value=13 Score=37.38 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=60.5
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHH
Q 000146 1332 LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1407 (2052)
Q Consensus 1332 f~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~ 1407 (2052)
|.-.+.-+.+.-+=+|+..|..|..+|++....+....+.+.....++.|.|+=|--+|+++|+++-...++.+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 4444555677778889999999999999998322223455688889999999999999999999998888876654
No 191
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=73.95 E-value=14 Score=42.16 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
...++.|+..+.+.+..+|..++.++..++..-=-. + ..++|.++.+..|+++.+|+.|.+.+..+....+.=..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn---P--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN---P--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC---h--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 467788888888999999999999999988753111 1 56899999999999999999999999888766653222
Q ss_pred HHhHhh
Q 000146 521 ERSIEK 526 (2052)
Q Consensus 521 ~~~l~~ 526 (2052)
..+.++
T Consensus 82 ~~~~~g 87 (187)
T PF12830_consen 82 SRYSEG 87 (187)
T ss_pred HHHHHH
Confidence 334333
No 192
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=73.61 E-value=21 Score=45.30 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhc-----C---------chh
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG---DNKKHMRECTLTVLDAWLAAV-----H---------LDK 1010 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~---D~k~~VR~aa~~aL~~i~~~~-----~---------l~~ 1010 (2052)
...+.+|++.+..+++.-+....+.+-.++..+++.+. ..+..-.++|...+.+++... | +..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 45678899999999887776666655566666665432 233446778888888877543 2 122
Q ss_pred hHH-HHHHHHh-cCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1011 MVP-YVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1011 ll~-~l~~~L~-~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
++. .+.+-|. +.+..|-+|..++.++... .+.-+...+..+++.++.+|.+.+.-|+..|+-|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~F-r~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTF-RNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHH-GGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222 2334444 2222588999999999864 44333445677888899999999999999988764
No 193
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.49 E-value=1.7e+02 Score=40.14 Aligned_cols=181 Identities=12% Similarity=0.127 Sum_probs=100.4
Q ss_pred HHHHHhhhcC-CHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 643 ADTVGQLKSA-VWKERLEAISSLRQQVEAVQNL---DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 643 ~~l~~~L~s~-~Wk~Rl~ale~L~~~v~~~~~~---~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
..++.+|... +--.-++++.+|.+++.-+.+. ....+.++..|... ---+.||-++..++.+|.++.+.++.-..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~L-L~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVAL-LSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 4567777765 8888888998888877443221 11234444433221 01478999999999999999999876333
Q ss_pred hhH-HHHHHHHHHhhhchhhh---HHHHHHHHHHHhhhChhHH----HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCC
Q 000146 719 KCV-VLCLLGISERVADIKTR---AHAMKCLTTFSEAVGPGFI----FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 790 (2052)
Q Consensus 719 ~~~-~~il~~LveKlgd~K~r---~~a~e~L~~l~E~~~~~~V----l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~ 790 (2052)
-.+ +..||.+++||-..-.- +++.++|..+....+-..+ +..++.++ +-=+--++..+|...+.+......
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222 24789999998886544 4444444444444332211 11111111 111112233444445555544443
Q ss_pred CCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 791 SHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 791 ~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
..+ .+-+.++.+..+ |++.+..+-..+.-++..+.
T Consensus 328 d~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred ccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHH
Confidence 322 134556666777 77777665555555554443
No 194
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.39 E-value=52 Score=39.32 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=63.9
Q ss_pred CcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCc------ccHHHHHHHHHHHHHHHHHHcC
Q 000146 641 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS------EKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 641 l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~------DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
|..-+-..+..++-..|-+|++.|..- ....-|+.||... |. =+|.+++--.+++...+..+-.
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~d--------sGlhQLvPYFi~f--~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRND--------SGLHQLVPYFIHF--FNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--------ccHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 333334455667888999999888621 1223344443321 22 2466677777777777777644
Q ss_pred CCchhhHHHHHHHHHH-----hhhch-h------hhHHHHHHHHHHHhhhChh
Q 000146 715 KFPKKCVVLCLLGISE-----RVADI-K------TRAHAMKCLTTFSEAVGPG 755 (2052)
Q Consensus 715 ~~~~~~~~~il~~Lve-----Klgd~-K------~r~~a~e~L~~l~E~~~~~ 755 (2052)
-|...++..++|.++. |+|+. + +|+.|...|.-++..++..
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4677777666665543 56552 2 6888888888887776643
No 195
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.25 E-value=18 Score=42.94 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=70.6
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc---CC--hHHHHHHHHH-HHHHH
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN---KV--PLVRSLTLNW-VTFCI 470 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~---Kn--p~vR~~~l~~-L~~~l 470 (2052)
+..+-|...++.+|+ .|.....++||.++|.. -.++.+++|..+..+.. || -..+..++-. ...++
T Consensus 193 KELq~YF~kvisal~---dEs~~~~r~aAl~sLr~-----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALL---DESDEQTRDAALESLRN-----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 344456667777774 57788889888887763 36788888877665542 22 1222223222 22333
Q ss_pred HhcChhHHHHhhhhHHHHHHHhh------cC----CChHHHHHHHHHHHHHHHHhCC
Q 000146 471 ETSSKAAVLKVHKDYVPICMECL------ND----GTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l------~D----s~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.+ +--.+.+|+..++|.+..|+ ++ ....+|+-|...+...++.+|.
T Consensus 265 ~N-~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 265 KN-KYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred cC-CceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 32 21123478889999988887 22 2235999999999999988884
No 196
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.98 E-value=16 Score=47.22 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=72.3
Q ss_pred hcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHH
Q 000146 332 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 409 (2052)
Q Consensus 332 ~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~ 409 (2052)
.+...+|.-- .+|+.+++.. .+.-.+++++|+|+|...++.|...|+.+|+.+.+-.|..|... -+.|+.-
T Consensus 13 ~l~~pDWa~N----leIcD~IN~~---~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALN----LEICDLINST---EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHH----HHHHHHHhcC---ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4667888543 3455555422 12234899999999999999999999999999999999988643 4577888
Q ss_pred HHHHhccC-c-HHHHHHHHHHHHHHHHh
Q 000146 410 LLEKLKEK-K-PTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 410 LL~klkdk-K-~~V~~aa~~aL~ai~~~ 435 (2052)
++..+|.+ - ..||+-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 88888777 3 46777777777777654
No 197
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=72.11 E-value=51 Score=41.49 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=75.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc-hHHHH--HHHHHHHHHHHHHh----ChhhHHh
Q 000146 900 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLV--MATLITLGAVASAM----GPAVEKS 972 (2052)
Q Consensus 900 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~--~~Al~~l~~la~al----g~~~~~~ 972 (2052)
.+.+.+-..|.+||+.|+. +. . +.+|++.|...+.+. ..++. ...+..+-.++.+| .-.+++|
T Consensus 186 a~~~~~~~~r~~aL~sL~t-----D~----g-l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-----DP----G-LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-----CC----C-chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 3455677788888887742 12 2 366777776666443 22222 23344444444444 3357899
Q ss_pred hhHHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCccChhHHHHHHHHH
Q 000146 973 SKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 973 ~~~llp~ll~~l~----------D~k~~VR~aa~~aL~~i~~~~~--l~~ll~----~l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
+..++|.++.++- +..-.+|+.|...|..++..++ ...+.+ .+..+|.+++.......+++-.|
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 9999999999883 2334799999999999998876 223333 34444444332222344444444
Q ss_pred H
Q 000146 1037 S 1037 (2052)
Q Consensus 1037 ~ 1037 (2052)
.
T Consensus 336 ~ 336 (343)
T cd08050 336 S 336 (343)
T ss_pred H
Confidence 3
No 198
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=72.03 E-value=14 Score=42.51 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChh
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 1027 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~ 1027 (2052)
...-...+.+++.+...+|....+++..++..+-+.-.+..-..|..+..|+++.+++.|++.++..+-=.+........
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 44556778899999999999888888888877777777777889999999999999999999888754333331111234
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc
Q 000146 1028 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060 (2052)
Q Consensus 1028 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1060 (2052)
.|.=++-.|...+.+. .-......+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 5665666565544321 1123445555555443
No 199
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=25 Score=45.12 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHHhc---CCCCCCC--------ChH--HHHH-HHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh
Q 000146 336 TKWSERKDAVAELTKLAS---TKRIAPG--------DFT--EVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 401 (2052)
Q Consensus 336 ~kWkeR~eaL~~L~~L~~---~~ki~~~--------dy~--~l~~-~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 401 (2052)
..|+ .||++.+...+. +.++.-+ .|+ ++.. .+.+.+.|..+.++....-.++.---|-+.
T Consensus 476 gt~s--~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn---- 549 (926)
T COG5116 476 GTWS--VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN---- 549 (926)
T ss_pred cCCC--HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----
Confidence 4564 477777766552 2333211 121 2222 344555588887777766555433333332
Q ss_pred hhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-hhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000146 402 SSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS-VKNKVPLVRSLTLNWVTFCIETSSKAAVL 479 (2052)
Q Consensus 402 ~~~~llp~LL~k-lkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~-L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 479 (2052)
..++..+|.- ..|.+..||.||.-||.-+|.. .. +.+..+.+- .++-|+.||.+++-.|.........
T Consensus 550 --~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D~-~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 550 --LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---DR-DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred --chhHhhhheeecccCchHHHHHHHHheeeeEec---Cc-chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 1345556655 6789999999998888877532 22 233333333 3578999999999999987765543
Q ss_pred HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 480 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 480 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+.....|-.++.|++.-||.+|+=+++.|.....
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 3344556667789999999999998887764443
No 200
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.67 E-value=2.6e+02 Score=37.86 Aligned_cols=24 Identities=0% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHHHH
Q 000146 448 KTSVKNK-VPLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 448 ~~~L~~K-np~vR~~~l~~L~~~l~ 471 (2052)
+++|.+. .++....|+.|+..+..
T Consensus 293 v~gl~~~e~~~l~vacmq~INal~t 317 (1102)
T KOG1924|consen 293 VEGLDFLEKQQLQVACMQFINALVT 317 (1102)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC
Confidence 3455543 56777777777666543
No 201
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.35 E-value=28 Score=36.59 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=56.2
Q ss_pred ccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000146 925 KRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDA 1001 (2052)
Q Consensus 925 ~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR~aa~~aL~~ 1001 (2052)
.++..++ .++++.|...|. ..+..+...||.-|+.+++..... ...+.. .=..|++.+.+.++.||-.|..|+..
T Consensus 35 ~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4556665 789999999994 447888899999999999887332 232322 23567778888888999988888887
Q ss_pred HHHh
Q 000146 1002 WLAA 1005 (2052)
Q Consensus 1002 i~~~ 1005 (2052)
++.+
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 202
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.29 E-value=7.6e+02 Score=39.87 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=102.9
Q ss_pred CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 000146 792 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 871 (2052)
Q Consensus 792 ~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~ 871 (2052)
.++..-+++.+... +.+.|..+|.++..++..++...-..+. + +.+.
T Consensus 979 ~lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~l~----~-----------------------~~~~----- 1025 (3550)
T KOG0889|consen 979 MLDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLILG----S-----------------------PERA----- 1025 (3550)
T ss_pred ccCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHhhc----C-----------------------cchh-----
Confidence 35666778888776 9999999999999988777643211110 0 0000
Q ss_pred ccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhhhccchHHH
Q 000146 872 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNL 950 (2052)
Q Consensus 872 ~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~aL~~rL~DsN~~V 950 (2052)
-...+...|-+.++..+.++.|.-|..|.-.|.-++..-+ ..+- ..+.++++++.-+|.|.-..+
T Consensus 1026 -------------~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~ 1091 (3550)
T KOG0889|consen 1026 -------------FKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEV 1091 (3550)
T ss_pred -------------hccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCcccc
Confidence 0011233444566666777777777777777666665321 1110 113556666665655432222
Q ss_pred HH----HHHHHHHHHHHH----hCh-hhH-HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Q 000146 951 VM----ATLITLGAVASA----MGP-AVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTT 1017 (2052)
Q Consensus 951 ~~----~Al~~l~~la~a----lg~-~~~-~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--~~ll~~l~~ 1017 (2052)
-. .+-.++..+-.. .+. .-. .....++..+..-|.+.+..||+.+..+|..+.+..|. ..++.-+.+
T Consensus 1092 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~ 1170 (3550)
T KOG0889|consen 1092 SSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKD 1170 (3550)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 21 222222222222 111 111 34566777888888899999999999999999998863 344443333
No 203
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.02 E-value=52 Score=37.63 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+...++.+++.+-.++..||..+...+..+...|=+++..++|.+.+-..+.++.+|..+...+..+.+.++.-....+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44567888888899999999999999999998866788999999988777999999999999999988887543222222
Q ss_pred h---hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 483 K---DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 483 ~---~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+ .-...-..+-.|.....+......++.+...++
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2 111122223344444333335566666666665
No 204
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=69.74 E-value=52 Score=45.08 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh--hhcchhhhh--hHHHHHHHHhccCc--
Q 000146 345 VAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKK-- 418 (2052)
Q Consensus 345 L~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~--~llp~LL~klkdkK-- 418 (2052)
++.++.++.++.-....+.+.+.-|.+.+..... -...+.|+|.|++-- .-++..++. .++|.|.+.++...
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~ 548 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE 548 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 3456777755422223456666666677762222 356677888887743 224555554 68899988887653
Q ss_pred HHHHHHHHHHHHHHHHh-cCCC-H--HHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHH
Q 000146 419 PTVAESLTQTLQAMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICME 491 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~-~~~~-l--~~ll~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k 491 (2052)
..+.-.+...+.+++.. .|-. + ..+++.+.+.|+.|. -..=.+.+-.+.+++.+... ..+... ..+...++.
T Consensus 549 dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylid 627 (708)
T PF05804_consen 549 DDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLID 627 (708)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHH
Confidence 23433333444444322 1111 1 356777777777664 44555666666666654221 222222 457889999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHh
Q 000146 492 CLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 492 ~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
++.|++++||..|-.||..++..=
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888653
No 205
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.56 E-value=33 Score=43.22 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=82.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHH----HHHHhcCC--CCcccHHHHHHHHHHHHHHHHHHcCCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEIL----VRLVCMLP--GWSEKNVQVQQQVIEVINYLAATATKF 716 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~L----v~~L~~~p--g~~DsN~qV~~~~Le~l~~l~~~~~~~ 716 (2052)
..+.+.|.+.+-..|..|++.|.. +...+-| ++++...- .... |..++...+.++..|+.+-.-+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t--------D~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT--------DPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc--------CCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCc
Confidence 356667777888999999998761 1222333 33332110 1222 7778888899999998873334
Q ss_pred chhhHHHHHHHHHHhhhc------h------hhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHH-HHHH
Q 000146 717 PKKCVVLCLLGISERVAD------I------KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKV-LSEG 777 (2052)
Q Consensus 717 ~~~~~~~il~~LveKlgd------~------K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv-~~e~ 777 (2052)
...++..++|.++.-+.. + .+|+.|.++|..+|..++.. .|+..+.+.+.+.+.|-. +-++
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA 331 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA 331 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence 566666666666544422 1 36999999999999988754 345555555555554443 6666
Q ss_pred HHHHH
Q 000146 778 ILWMV 782 (2052)
Q Consensus 778 L~~L~ 782 (2052)
+..|.
T Consensus 332 i~GL~ 336 (343)
T cd08050 332 IVGLS 336 (343)
T ss_pred HHHHH
Confidence 66554
No 206
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=68.30 E-value=34 Score=35.42 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
-.-|..++.-+..+++-.. ..+....+.|+-.|..+|+ .++.|..|++|...+.+.+.+..+.++++..
T Consensus 29 ~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~ 97 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQI 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678889999988888544 4456667888888888887 6679999999999999999988888877754
No 207
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.04 E-value=70 Score=34.91 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHH-HHHhhcC---CChHHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPI-CMECLND---GTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~-l~k~l~D---s~~~VR~aA~~~l~~l 511 (2052)
.+..+.+..|..-++ ++||++-..++..|..|+++|+...... .-+.++.. |.+.+++ ....|++...+.+...
T Consensus 34 ~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 34 DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 456667777777776 5799999999999999999998653221 22567776 7788764 4569999999999999
Q ss_pred HHHhCCh
Q 000146 512 AKSVGMR 518 (2052)
Q Consensus 512 ~~~~Ge~ 518 (2052)
...++.+
T Consensus 114 ~~~f~~~ 120 (141)
T cd03565 114 ADAFRGS 120 (141)
T ss_pred HHHhCCC
Confidence 9888754
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=67.87 E-value=44 Score=44.74 Aligned_cols=170 Identities=12% Similarity=0.156 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000146 905 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 984 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l 984 (2052)
+-+.+-+-++.|-+++-.-..+++ +..+++.|..-| .|...+-..+-++-.|+...... .|...++|.|...+
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~---~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~--~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVL---FQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQN--EFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHH---HHhhhhHHHHHh--ccccccccccchhhhhhhccchh--hhhhhhhHHHHHHh
Confidence 334444555555555532222222 345555555555 33444444445555555444332 34455555555544
Q ss_pred C-CCcHHHHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHh-
Q 000146 985 G-DNKKHMRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI- 1058 (2052)
Q Consensus 985 ~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~- 1058 (2052)
. -....++-...+=++.+.+.++-+.+.+ .|...+++. ...+...++..+..+++... ...+++.+-|-+.
T Consensus 359 ~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~ 435 (700)
T KOG2137|consen 359 SASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS--DVQIQELALQILPTVAESID-VPFVKQAILPRLKN 435 (700)
T ss_pred ccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhc
Confidence 4 2222345555566677777776544444 444444332 24444556666655544433 2334555555333
Q ss_pred -hcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1059 -AMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1059 -~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
|+...+..|+-++-.|+..++..+..
T Consensus 436 l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 436 LAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred chhcccchHHHHHHHHHHHHHHHHHHH
Confidence 45677777888777777777744443
No 209
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=67.30 E-value=40 Score=34.92 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=57.5
Q ss_pred hHHHHHHhhhccch--H--HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000146 934 ELFGGLRGRLYDSN--K--NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 934 eL~~aL~~rL~DsN--~--~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.++..+...+.|.. + .-...+++.++.+.+.+|+....+...+...+-..|. .+..|..+..|...++.++..+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 45566666777765 3 2378899999999998887766666666666666665 5569999999999999998755
Q ss_pred hhHH
Q 000146 1010 KMVP 1013 (2052)
Q Consensus 1010 ~ll~ 1013 (2052)
.+-+
T Consensus 89 ~l~~ 92 (107)
T smart00802 89 ELGP 92 (107)
T ss_pred HHHH
Confidence 4433
No 210
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=67.10 E-value=47 Score=34.40 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHhhhcc----chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000146 935 LFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 1010 (2052)
Q Consensus 935 L~~aL~~rL~D----sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ 1010 (2052)
++..+...+.| ....-...+++.++.+.+..|+....+...+...+-..+... .+|..+.+|-+.+++.++.+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 44555555655 455677889999999999666555555555555555555444 899999999999999998655
Q ss_pred hHHH
Q 000146 1011 MVPY 1014 (2052)
Q Consensus 1011 ll~~ 1014 (2052)
+-|.
T Consensus 90 l~~l 93 (107)
T PF08064_consen 90 LGPL 93 (107)
T ss_pred HHHH
Confidence 5443
No 211
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=67.07 E-value=44 Score=40.51 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=115.4
Q ss_pred CcCccchhhhhcccCChHHHHHHHHHHHHHhc---CCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhh
Q 000146 322 TPLEKSGFWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT 397 (2052)
Q Consensus 322 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~---~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~ 397 (2052)
+.+| ++...+-|.+-..-..|...++++++ +|-|.+---..+++.+...+. ..+-....+|.=+|..+|.|-..
T Consensus 71 ~elp--~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 71 SELP--QLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hhhH--HHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence 3455 56667788888888899999999774 455554222334555555553 55666777899999999987654
Q ss_pred cchhh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHhhcCC---hHHHHHHHHHHH
Q 000146 398 HFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKV---PLVRSLTLNWVT 467 (2052)
Q Consensus 398 ~f~~~-~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~------ll~~l~~~L~~Kn---p~vR~~~l~~L~ 467 (2052)
.-.-. -..-+|.++..+.+....|++.+.=||..++.. +....+ .++.++.-+.+.. ..+|-.| |..
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD-S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T--WtL 225 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD-SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT--WTL 225 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC-chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH--HHH
Confidence 31100 113467778888899999999999999988765 222222 2344444444332 3444333 443
Q ss_pred HHHHh--cChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 468 FCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 468 ~~l~~--~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.-+.. .++... ..+...+|.|.|++.-.+++|-- .++|++..+.
T Consensus 226 SNlcRGknP~P~w-~~isqalpiL~KLiys~D~evlv---DA~WAiSYls 271 (526)
T COG5064 226 SNLCRGKNPPPDW-SNISQALPILAKLIYSRDPEVLV---DACWAISYLS 271 (526)
T ss_pred HHhhCCCCCCCch-HHHHHHHHHHHHHHhhcCHHHHH---HHHHHHHHhc
Confidence 33332 233322 33577899999999999999854 4555555443
No 212
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.80 E-value=42 Score=44.68 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=87.8
Q ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000146 369 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 447 (2052)
Q Consensus 369 L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k-lkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l 447 (2052)
++..+.|.++.++...+-.++.--.|-+.. . .+..||.- ..|.+..||.+|.-||.-++-. ..+.+ +.+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnn--k----air~lLh~aVsD~nDDVrRaAVialGFVl~~---dp~~~-~s~ 593 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNN--K----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---DPEQL-PST 593 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCch--h----hHHHhhcccccccchHHHHHHHHHheeeEec---Chhhc-hHH
Confidence 444556888888888765554333333321 2 23334443 5788999999999998877642 33333 333
Q ss_pred HHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 448 KTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 448 ~~~L-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.+-| .+-||.||.+++-.|..+...+.- ++.+..|-.++.|+..-||..|.=+++.|+-..-
T Consensus 594 V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 594 VSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 3333 478999999999999987775543 3344555566779999999999999998875544
No 213
>PF05536 Neurochondrin: Neurochondrin
Probab=65.31 E-value=81 Score=42.31 Aligned_cols=173 Identities=15% Similarity=0.115 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccCcHH
Q 000146 344 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 420 (2052)
Q Consensus 344 aL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkK~~ 420 (2052)
|+--|..++..|.+.. .+.-+-++.|.+++. .....++..+++|+..++ .-..+.+.. ....++.|.+.+.. .+.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 4444555555555543 456677888888887 333588999999999999 333333222 33567777777666 666
Q ss_pred HHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----HHHHhhhhHHH
Q 000146 421 VAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 487 (2052)
Q Consensus 421 V~~aa~~aL~ai~~~~~--------~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-----~l~~~l~~l~p 487 (2052)
..+.+...+..++.... ..+..+++.|...+..-.-..|-+.+.+|..++...+.. .-...++.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 77878888877776511 113455566655555444567788899999999877311 11133455666
Q ss_pred HHHHhh-cCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 488 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 488 ~l~k~l-~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
.+..++ +...+.-|+.|..+.+.+..++|.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 666666 4667889999999999999999964
No 214
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.92 E-value=29 Score=36.55 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 443 VVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 443 ll~~l~~~L-~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
++..|...| ++.++.+-.-++.=|+.++..++... +... -..-..++.+|++++++||..|..|+..+|.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444444 23355555566667777777665331 1111 1244678899999999999999999998874
No 215
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.78 E-value=63 Score=39.67 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=110.5
Q ss_pred hhhcccCChHHHHHHHHHHHHHhc---CCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 330 WEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 330 ~~~l~s~kWkeR~eaL~~L~~L~~---~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.+.+.+.+-..|.-+-..+..++- +-|+....-..+++.|...+.|...+|...|..+++.++..-+-..+-.-..-
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~ 293 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGS 293 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence 344444444444444444444331 12222222345789999999999999999999999988865442221112234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhc--ChhHH
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETS--SKAAV 478 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~--~~~~l 478 (2052)
+|.+++.+.+.--...-+-..|+..+..+ ...- .-++..+..-|.-+ |-.++..+...|..+.... ....+
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i 372 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI 372 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 78888888777655666667788777665 1110 11233355555533 5567777777777655432 22222
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
. =.--+|.+..++-|+.-+||..-..|++.+.
T Consensus 373 ~--esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 373 R--ESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred h--hcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 1 1235788889999999999999999987765
No 216
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=64.30 E-value=1.1e+02 Score=41.34 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=104.5
Q ss_pred ChH-HHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000146 361 DFT-EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 438 (2052)
Q Consensus 361 dy~-~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~ 438 (2052)
+|. .++.+|..+++ -.+.++...-++=...|.+.+.+. .....|+|-|...+++.-..+++.+...+-.+++. .
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--I 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--c
Confidence 453 55667777776 445555544455555566666543 35778999999999999999999999999999886 3
Q ss_pred CH----HHHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 439 NL----VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 439 ~l----~~ll~~l~~-~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.. ..|+|.|.. ++++-+..+|..++..+..+++..++... -+.+..+.+|+.=.+|.+--.....+..++-
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV----LDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 33 456666643 55677899999999999999987765543 2345557788888888887777777766654
Q ss_pred Hh
Q 000146 514 SV 515 (2052)
Q Consensus 514 ~~ 515 (2052)
..
T Consensus 497 ~~ 498 (700)
T KOG2137|consen 497 II 498 (700)
T ss_pred hc
Confidence 43
No 217
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=64.09 E-value=66 Score=35.64 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.1
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHhc
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT 374 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~----ki~~~dy~~l~~~L~k~l~ 374 (2052)
+....|.|.|=++|.+||+.|..+.+.+ .+....|..++.+|.+++.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 3566789999999999999999988543 3455689999999988763
No 218
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.70 E-value=97 Score=41.07 Aligned_cols=108 Identities=15% Similarity=0.242 Sum_probs=78.4
Q ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHhh------hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---
Q 000146 369 LKKLITDVNIAVAVEAIQAIGNLARGLR------THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN--- 439 (2052)
Q Consensus 369 L~k~l~D~N~~V~~~A~~~l~~La~~L~------~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~--- 439 (2052)
+.+.+......++..-+.+++.+...+. ..+.+.+..++..+.+++.|..|-+|..+.+.+..+|.-+...
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 3344554455544444455555544443 2334457788999999999999999999999999998752211
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 440 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 440 l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
=..+...+...+++++.-||..+...+..++.+||-+
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 2567777888999999999999999999999888643
No 219
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=62.33 E-value=2.9e+02 Score=37.02 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHH---HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHH
Q 000146 379 AVAVEAIQAIGNLAR---GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKT 449 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~---~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~ 449 (2052)
-++..||-|+..++. .|+.+|.. ..+..+|+..+-+....|..++..|+.+++-.. .++ .-.++.+..
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHH
Confidence 458888888877665 67877642 234445555557888888888888888887541 222 234566777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 450 SVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 450 ~L~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.+.++-+.+|..++.+|...+=.+.... +..+-+--+..+....+|++.+|.+.++..+-.+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 7788889999999999998876655432 22233444556777889999999999888776553
No 220
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=62.04 E-value=24 Score=42.41 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=68.3
Q ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh----hhHHHHHHHhhcCCCh
Q 000146 425 LTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH----KDYVPICMECLNDGTP 498 (2052)
Q Consensus 425 a~~aL~ai~~~--~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l----~~l~p~l~k~l~Ds~~ 498 (2052)
+..||..+++. +..-...+++++..+|.+....||.-++.-+.++++.++.......+ ..+.|.++.|+...+-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 33455555543 11224678899999999999999999999999999998765544322 5689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000146 499 EVRDAAFSVLAAIA 512 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~ 512 (2052)
+|-++|.+.+..+.
T Consensus 143 eVAkAAiesikria 156 (524)
T KOG4413|consen 143 EVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887665
No 221
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.56 E-value=7.3e+02 Score=35.80 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred hhhHHHHHHhhh----ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000146 932 TGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 932 ~~eL~~aL~~rL----~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~ 1006 (2052)
+|.+.+.+.... -=+|+.+..+|--+++.+..--.. |...=+|-++..+. ...+.||.-+.-+++.++-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 455555555444 224577887777777777644333 33444555555554 678889999999999888776
Q ss_pred C--chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000146 1007 H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1007 ~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
+ ++.+-+.+..-|.+. ++.+|..++-.|...+-+-- --++..+.-...||.|.+++||.-|...+-.
T Consensus 993 pnlie~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndm--iKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDM--IKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred ccccchhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6 688888999999887 69999999988887654311 0123344447789999999999999944433
No 222
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=59.45 E-value=43 Score=37.59 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 984 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l 984 (2052)
..|+.|.+.+..++..+..++. ..+++..+..-|+| ...|+..++.++..++......+.+.+..++.++-..|
T Consensus 42 elRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999985433333 57888899999999 99999999999999998776666666666666655544
No 223
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.43 E-value=56 Score=43.13 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=81.9
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhc-ccc-CC---CCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEA-NKR-IQ---PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a-~~~-I~---~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
.+.+.+.+..+-.|..-++....++.+- ... .. +....+|+..|..||.|+++-++..|++.+..++..- ..+.
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~ 381 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTV 381 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-cccc
Confidence 3456678889999999999988888642 110 10 1124678999999999999999999999999998543 2232
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.--..+..-+..++.|....||.-|+.-+..+.-.-+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3335677788899999999999998887776665443
No 224
>PF05536 Neurochondrin: Neurochondrin
Probab=57.96 E-value=6.2e+02 Score=34.14 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=99.6
Q ss_pred hhhHHHHHHhhhccch-HHHHHHHHHHHHHHHHHhChhhHHhhh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--
Q 000146 932 TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 1007 (2052)
Q Consensus 932 ~~eL~~aL~~rL~DsN-~~V~~~Al~~l~~la~alg~~~~~~~~-~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-- 1007 (2052)
+-+.++.|.+.+.... ..++..++.||..++ +-..+...++. ..++.+.+.+.+ .+...+.+...+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 3556677777774443 488899999999999 54444444433 366677776666 66677777777777776655
Q ss_pred --------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC----CCchhhhHHH----HHhhcC-CCCHHHHHH
Q 000146 1008 --------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG----FPDAAHLLKP----ASIAMT-DKSSDVRKA 1070 (2052)
Q Consensus 1008 --------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~----~~~~~~ll~p----l~~~L~-D~~~dVRka 1070 (2052)
+..+++.+...+... .-..|-+++.+|...|...+. ......+... +...|. .-.+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 224455555555432 235689999999999988741 1122223333 444554 446788999
Q ss_pred HHHHHHHHHHHcChhHHH
Q 000146 1071 AEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1071 A~~~L~~l~~~~G~e~~~ 1088 (2052)
|..+...++.++|.+-+.
T Consensus 252 al~Laa~Ll~~~G~~wl~ 269 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWLF 269 (543)
T ss_pred HHHHHHHHHHHhChHhhc
Confidence 999999999998876543
No 225
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.90 E-value=2.5e+02 Score=36.45 Aligned_cols=283 Identities=18% Similarity=0.226 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhcc--c-c-chHHHHHHHHHh-----cCCC-------------CcccHHHHHHHHHHHHHHHHHHcC
Q 000146 657 RLEAISSLRQQVEAVQ--N-L-DQSVEILVRLVC-----MLPG-------------WSEKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~--~-~-~~~~~~Lv~~L~-----~~pg-------------~~DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
|..++.+|.+.+.+.+ . . +...+.+++++. ..|. +.|....-++.+.+++..++...
T Consensus 43 K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~- 121 (409)
T PF01603_consen 43 KRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIESP- 121 (409)
T ss_dssp HHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHHCc-
Confidence 6677888887776643 1 1 112334444332 1121 22344456778888888888763
Q ss_pred CCc--hh-hHHHHHHHHHHhh--hchhhhHHHHHHHHHHHhhhChh--H----HHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 000146 715 KFP--KK-CVVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPG--F----IFERLYKIMKDHKNPKVLSEGILWMVS 783 (2052)
Q Consensus 715 ~~~--~~-~~~~il~~LveKl--gd~K~r~~a~e~L~~l~E~~~~~--~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~ 783 (2052)
.+. +. .-..++-.|++.+ -|++=|+....+|..+-.++... + +...++.++.+...+--..+.|..+..
T Consensus 122 ~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~s 201 (409)
T PF01603_consen 122 PFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGS 201 (409)
T ss_dssp T--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHH
T ss_pred cccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence 221 11 1234556666654 44677888888888877765432 2 344455555556666677888888888
Q ss_pred HHHHhCCCCCChHh-HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 784 AVEDFGVSHLKLKD-LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 784 ~i~~fG~~~l~~k~-li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
++..|.. ++++ ...++... + .-|| --+.+..|. +.+...+..-++|.+.
T Consensus 202 ii~gf~~---plk~eh~~fl~~v-l---------------lPLh--~~~~~~~y~----~~L~~~~~~f~~kdp~----- 251 (409)
T PF01603_consen 202 IINGFAV---PLKEEHKQFLRKV-L---------------LPLH--KSPHLSSYH----QQLSYCVVQFLEKDPS----- 251 (409)
T ss_dssp HHTT--S---S--HHHHHHHHHT-T---------------GGGG--GSTGGGGTH----HHHHHHHHHHHHH-GG-----
T ss_pred HHhccCC---CCcHHHHHHHHHH-H---------------HHHh--cCCcHHHHH----HHHHHHHHHHHHhCch-----
Confidence 8875553 3322 12222111 0 0001 111122222 2223333333333210
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh----hhHHHH
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT----GELFGG 938 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~----~eL~~a 938 (2052)
+...+-..+++----.+-..-.--+.++.+++.. +.+..+ ..++..
T Consensus 252 --------------------------l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~----~~~~~f~~i~~~lf~~ 301 (409)
T PF01603_consen 252 --------------------------LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV----LPPEEFQKIMVPLFKR 301 (409)
T ss_dssp --------------------------GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHH
Confidence 0000111122222222333344557778887752 333333 456677
Q ss_pred HHhhhccchHHHHHHHHHHHHHH--HHHhChhhHHhhhHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHH
Q 000146 939 LRGRLYDSNKNLVMATLITLGAV--ASAMGPAVEKSSKGVLSDILKCLGD-----NKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~l--a~alg~~~~~~~~~llp~ll~~l~D-----~k~~VR~aa~~aL~~i~~ 1004 (2052)
|...++..|.+|+..|+.++..= ... +.++...++|.++..+-. =+..||..+..++..+.+
T Consensus 302 la~ci~S~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 302 LAKCISSPHFQVAERALYFWNNEYFLSL----ISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHTSSSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77778999999999999876532 222 245566677777776654 245799999999998876
No 226
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.15 E-value=1e+03 Score=36.33 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=55.9
Q ss_pred hhHHHHHHhhhccchH-HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC---CCcHHHHHHHHHHHH------HH
Q 000146 933 GELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG---DNKKHMRECTLTVLD------AW 1002 (2052)
Q Consensus 933 ~eL~~aL~~rL~DsN~-~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~---D~k~~VR~aa~~aL~------~i 1002 (2052)
..-+..|...-.|++. .|...+|..+..++..-|+-+..|+...+.-++..+- +....|+++...|++ ++
T Consensus 957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen 957 NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHH
Confidence 3334455566688887 8888999999999988888888888888887777664 344567777777777 77
Q ss_pred HHhcC
Q 000146 1003 LAAVH 1007 (2052)
Q Consensus 1003 ~~~~~ 1007 (2052)
...+|
T Consensus 1037 ittlg 1041 (2067)
T KOG1822|consen 1037 ITTLG 1041 (2067)
T ss_pred HHhcc
Confidence 76665
No 227
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=56.54 E-value=1.3e+02 Score=36.13 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCccc-------cHHHHHhhh-cCCChhhHHHHHHHHHHHHHhhCCCc--ccccchHHHHHHHhcCCCh
Q 000146 1315 MRELTKQIVNFYSATK-------TLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDG 1384 (2052)
Q Consensus 1315 v~~il~~~~~v~p~sk-------vf~~l~~gl-~sKN~r~R~ecl~~l~~li~~~G~~~--~~~~K~l~~ia~~i~drd~ 1384 (2052)
.-.+++.+|+++|+++ ....+++=+ .+..+..+..||+-+.+++-.+..+. +.....+..|+.++.++..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 3468999999999985 445667767 56778999999999999987776554 2334567899999988755
Q ss_pred HHHHHHHHHHHHHHHHhChH
Q 000146 1385 EIRKAALNTLATGYKILGED 1404 (2052)
Q Consensus 1385 ~VR~AAl~~l~~~y~~~G~~ 1404 (2052)
. |+-=+.|+.-+|.|+++.
T Consensus 191 ~-~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 191 D-RELRLKCIEFLYFYLMPE 209 (257)
T ss_pred c-HHHhHHHHHHHHHHHccc
Confidence 2 444467777777777654
No 228
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=56.07 E-value=40 Score=35.57 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=60.6
Q ss_pred cccHHHHHhhhc-CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHHhcCCChHHHHHHHHHHHHHHHHh-Ch--
Q 000146 1329 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKIL-GE-- 1403 (2052)
Q Consensus 1329 skvf~~l~~gl~-sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~-G~-- 1403 (2052)
.++.|++.+|++ ++++..|+.|.-.++.+..+..++.. -..++ +.|.+.....+. .+.|+.||+.+|... +.
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999998 99999999999999999998887631 12333 555555554444 577999999999777 32
Q ss_pred ---HHHHHhhcCCH
Q 000146 1404 ---DIWRYVGKLTD 1414 (2052)
Q Consensus 1404 ---~v~~~~g~ls~ 1414 (2052)
++++.+-.++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 35666655554
No 229
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=55.08 E-value=1.1e+02 Score=38.23 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHhcCCC---------HHHHHHH
Q 000146 383 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVVED 446 (2052)
Q Consensus 383 ~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd-------kK~~V~~aa~~aL~ai~~~~~~~---------l~~ll~~ 446 (2052)
+.+.++..+.+.++..+.+++..++..+++..-+ .=|..|..--.-|.++..+ |.. +..+++.
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHH
Confidence 4467777777777777776666666666655422 2378888888888888776 422 3567777
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhcCh---h----HHHHhhhhHHHHHHHhhcCCC
Q 000146 447 VKTSVKNKVPLVRSLTLNWVTFCIETSSK---A----AVLKVHKDYVPICMECLNDGT 497 (2052)
Q Consensus 447 l~~~L~~Knp~vR~~~l~~L~~~l~~~~~---~----~l~~~l~~l~p~l~k~l~Ds~ 497 (2052)
+.-+++|.+..+-..+++.|..+++.... . -+..++-.++..+...+.|++
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 88899999999999999999999887544 1 112333444444555555554
No 230
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=1.1e+02 Score=37.09 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc-chhh----hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGS----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~-f~~~----~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~ 435 (2052)
.+++..|...+......|-..||+.|+.+...-..+ .... -..++|.++...+..+..|..++.+.+..+...
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 355666776666333446788899999888765532 2111 235789999999999999999999988887654
No 231
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=54.64 E-value=13 Score=31.69 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
+.+...+.+.+.|+.+.||++|.+.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998763
No 232
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=53.24 E-value=5.3e+02 Score=31.96 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhcCchh----hHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc-CCC
Q 000146 989 KHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TDK 1063 (2052)
Q Consensus 989 ~~VR~aa~~aL~~i~~~~~l~~----ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~ 1063 (2052)
-.+|-.....+-.++..+++-. =+..+-..|++-+++.....+++..+.+.+............+.-++... +|-
T Consensus 120 ~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dn 199 (378)
T KOG2753|consen 120 TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDN 199 (378)
T ss_pred chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccc
Confidence 3388888888888888877432 23355666765544556678899999998887765333344444455555 555
Q ss_pred CHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1064 SSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1064 ~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
....|..|.+|+..++.--.. ..-.++-.|+|-
T Consensus 200 as~AredA~rcV~~av~dP~~-F~fD~Ll~L~pV 232 (378)
T KOG2753|consen 200 ASEAREDAMRCVVEAVKDPKI-FLFDHLLTLPPV 232 (378)
T ss_pred hhHHHHHHHHHHHHHHcCCce-eccchhccCchH
Confidence 588999999999888765544 233345556553
No 233
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.56 E-value=8.5e+02 Score=37.03 Aligned_cols=298 Identities=11% Similarity=0.128 Sum_probs=164.8
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHH
Q 000146 649 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLL 726 (2052)
Q Consensus 649 L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~ 726 (2052)
+.+-+-|.|+.-++.+..-+.+.... + .+.+ + .|..+.+..+.++..+.+..+ .+...++...--
T Consensus 812 fp~v~~k~~~~ile~~~esi~~sk~~-r-~qsV-~----------~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 812 FPHVNNKIRLSILEHFPESIKQSKSA-R-QQSV-Q----------VNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhccc-h-hHHH-H----------HHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 34567788888877777655441111 0 1111 1 122234566666666666543 233333332222
Q ss_pred HHHHh-h--hchhhhHHHHHHHHHHHhhhChhH----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC--CChHh
Q 000146 727 GISER-V--ADIKTRAHAMKCLTTFSEAVGPGF----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH--LKLKD 797 (2052)
Q Consensus 727 ~LveK-l--gd~K~r~~a~e~L~~l~E~~~~~~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~--l~~k~ 797 (2052)
.++.. + .+++++=.+.+++..++..++-.. +.+.+++.+.+.+.|-.|.+....+..+.+.-|.-+ -.+..
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 22222 2 335777778888888888766433 455556666677888888888888877776655421 11122
Q ss_pred HHHHHHhhCCCC-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCC
Q 000146 798 LIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 798 li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
-+..+..+ .+| ..|.|++.++..+..+-.-.|+-++.+.+. .+..+..-+-.+ |+. +
T Consensus 959 ~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~----tlsl~~~lLls~----p~~--~----------- 1016 (2067)
T KOG1822|consen 959 SVSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP----TLSLCLKLLLSV----PTS--H----------- 1016 (2067)
T ss_pred HHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH----HHHHHHHHcCCC----Ccc--h-----------
Confidence 22234444 344 456999999998888777777766555422 222222221111 100 0
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHH--------HHHHhhhccchH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF--------GGLRGRLYDSNK 948 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~--------~aL~~rL~DsN~ 948 (2052)
+++...+...+ .+-+....++..-.+.++++...+-. -+..-.+.-++.
T Consensus 1017 ----------~ev~q~~~R~~-------------~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~ 1073 (2067)
T KOG1822|consen 1017 ----------VEVHQCYNRCF-------------NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDP 1073 (2067)
T ss_pred ----------hhhhhhhcccc-------------ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCcc
Confidence 00000000000 00011222333334556655322222 222223355678
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~ 1006 (2052)
-+..+++.|++.+...-.+ .-....+++.+...+..+.-..|++...|++.++...
T Consensus 1074 lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1074 LNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred chHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 8899999999998765544 3456889999999999999999999999999887653
No 234
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=52.48 E-value=2e+02 Score=37.24 Aligned_cols=149 Identities=12% Similarity=0.172 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHh-----hhcch-hhhhhHHHHHHHHhccCc---HHHHHHHHHHHHHH
Q 000146 363 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL-----RTHFS-GSSRFLLPVLLEKLKEKK---PTVAESLTQTLQAM 432 (2052)
Q Consensus 363 ~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L-----~~~f~-~~~~~llp~LL~klkdkK---~~V~~aa~~aL~ai 432 (2052)
.+++..|..+++ ...-+|++.++.++..+...- +..+. -.+..=++.++..+.++| +.+.+.+...-..+
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 467788888887 556678888888888877632 11121 122223456666666655 45555443333322
Q ss_pred HHh--cCCCHHHHHHHHHHH-hh----cC-------------------------------ChHHHHHHHHHHHHHHHhcC
Q 000146 433 HKA--GCLNLVDVVEDVKTS-VK----NK-------------------------------VPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 433 ~~~--~~~~l~~ll~~l~~~-L~----~K-------------------------------np~vR~~~l~~L~~~l~~~~ 474 (2052)
-.+ .-++++....++..+ |. |+ .|.+-.-++.=++.++..+|
T Consensus 307 ~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P 386 (429)
T cd00256 307 KNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP 386 (429)
T ss_pred HHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc
Confidence 222 024455555554332 11 32 22222222333333333333
Q ss_pred hh--HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 475 KA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 475 ~~--~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.. .+.+ +. .-..++++|++++++||..|..|+..+|-
T Consensus 387 ~gr~i~~~-lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 387 RGKDVVEQ-LG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cHHHHHHH-cC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 21 1111 11 23467899999999999999999998863
No 235
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.37 E-value=93 Score=34.79 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCC----Ch-----hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 905 DWKVRLESIEAVNKILEEANKRIQPA----GT-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a~~~I~~~----~~-----~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
+++.|.=|++.+..+++.++..+... .+ .+++..|.+.+...+..+...+++++..+...++..++...+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999998764444421 01 2344555555545569999999999999999999999999999
Q ss_pred HHHHHHHHhCCCc---HHHHHHHHHHHHHHHH
Q 000146 976 VLSDILKCLGDNK---KHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 976 llp~ll~~l~D~k---~~VR~aa~~aL~~i~~ 1004 (2052)
+++.++..+-+++ ...|..+.+++..+..
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 9999988554422 2566777777776654
No 236
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=52.02 E-value=6.9e+02 Score=32.94 Aligned_cols=133 Identities=11% Similarity=0.182 Sum_probs=97.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHh-----
Q 000146 692 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK----- 766 (2052)
Q Consensus 692 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~----- 766 (2052)
+-++.......|+++..++. ++.+...++..++..|..-.+-....+.+.+++..++........+..++..+.
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 34455566788888887776 477778888888887776666667888899999999987666677788888872
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhCCCCC---ChHh--HHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 767 DHKNPKVLSEGILWMVSAVEDFGVSHL---KLKD--LIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 767 ~~KnpKv~~e~L~~L~~~i~~fG~~~l---~~k~--li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
...++.+..+++..+..++-..|.+++ +... +++-+..+ +...++.|=.....++-.+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHH
Confidence 235778888999999999987755543 3444 88888887 88888876666555555554
No 237
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=51.63 E-value=3.4e+02 Score=33.90 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=72.6
Q ss_pred hhHHHHHHHHhccCcHHHHHH-HHHHHHHHHHh----cCCCHHHHHHHHHHH----hh---cCChHHHHHHHHHHHHHHH
Q 000146 404 RFLLPVLLEKLKEKKPTVAES-LTQTLQAMHKA----GCLNLVDVVEDVKTS----VK---NKVPLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~a-a~~aL~ai~~~----~~~~l~~ll~~l~~~----L~---~Knp~vR~~~l~~L~~~l~ 471 (2052)
..++.++|.-..+..+..|++ +..++.+++.. ...-++.+++.+... ++ +.-|..|.+-..+|..+.+
T Consensus 70 ~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~ 149 (319)
T PF08767_consen 70 PPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINE 149 (319)
T ss_dssp HHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHH
Confidence 333333444444444444443 23333333332 123355555555432 22 3469999999999999999
Q ss_pred hcChhHHH---HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 472 TSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 472 ~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.+....+. ...+.++..+.-++.++.++|-+.|.+++..+..-+..
T Consensus 150 ~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 150 HCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 87654332 44688999999999999999999999999988876654
No 238
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=50.90 E-value=1.5e+02 Score=36.98 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHhhcC-ChHHHHH
Q 000146 390 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNK-VPLVRSL 461 (2052)
Q Consensus 390 ~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-------l~~ll~~l~~~L~~K-np~vR~~ 461 (2052)
.+|..++.++ .-.+.++..|.+|+..+.+.|+--+...+++++.+ |-. -.++...+...+.+| .++|+..
T Consensus 31 DvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N-Cg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 31 DVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN-CGKRFRLEVSSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred HHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-cchHHHHHHhhhhHHHHHHHHHhhcccHHHHHH
Confidence 3444555555 45678899999999999999999999999999998 732 244555555555533 4677766
Q ss_pred HHHHHHHHHHhc
Q 000146 462 TLNWVTFCIETS 473 (2052)
Q Consensus 462 ~l~~L~~~l~~~ 473 (2052)
....+....+.+
T Consensus 109 ~~~lv~eWsee~ 120 (462)
T KOG2199|consen 109 MRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHHHh
Confidence 555555544433
No 239
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=50.87 E-value=56 Score=36.40 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=50.2
Q ss_pred HHHHHhhhccc-hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000146 936 FGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 936 ~~aL~~rL~Ds-N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~ 1004 (2052)
+.+|...|+|. -..--..++.++-.+.+.+|.++-+|+..++|.++..+.......|+....-|..++.
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444455553 2333345566667777889999999999999999999998777888887777776654
No 240
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=50.69 E-value=3.4e+02 Score=35.49 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=111.4
Q ss_pred CCCcccccccc---cHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-----ccchHHHHHHH
Q 000146 883 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMAT 954 (2052)
Q Consensus 883 ~lpr~dIs~~i---~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-----~DsN~~V~~~A 954 (2052)
.+.+.||.+.+ ...|+..+....-.+-.=-+.++-+++.-....+.|. ...++.-|...+ +.+|+.-..-.
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 35555665433 2344444433221222335667777776544555554 355665555544 56899999999
Q ss_pred HHHHHHHHHHhCh-h---hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---c----hhhHHHHH-HHHhcC
Q 000146 955 LITLGAVASAMGP-A---VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L----DKMVPYVT-TALTDA 1022 (2052)
Q Consensus 955 l~~l~~la~alg~-~---~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~---l----~~ll~~l~-~~L~~~ 1022 (2052)
.++++.+.+.... + ...+-..++|.+...|...-....-.+..-|..+.+..+ + ..++|.+. +.+-+.
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~ 172 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER 172 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc
Confidence 9999999887553 2 236677788888888887766666777777777777654 2 33444322 222111
Q ss_pred ccChhHHHHHHHHHHHHhccCCC----CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000146 1023 KLGAEGRKDLFDWLSKQLTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1093 (2052)
Q Consensus 1023 k~np~~R~~~l~~L~~~l~~~~~----~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~ 1093 (2052)
+.|- -.+...|..++.+.+. ...+..++--+-+++..+..| ..|.+.|..++.+++.+.+.+++..
T Consensus 173 ~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 173 RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 1120 1122222222322221 223344444455677776665 6799999999999999998888643
No 241
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=50.45 E-value=3.9e+02 Score=31.95 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=68.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccC------------------CCCC-----------hhhHHHHHHhhhcc
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRI------------------QPAG-----------TGELFGGLRGRLYD 945 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I------------------~~~~-----------~~eL~~aL~~rL~D 945 (2052)
..++..+.+.++-+|..++.-++.++--....- .+++ -..++..|...+.+
T Consensus 46 ~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~ 125 (239)
T PF11935_consen 46 DRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQS 125 (239)
T ss_dssp HHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777888888888887775211111 0111 12366666677755
Q ss_pred c--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC--------cHHHHHHHHHH----HHHHHHhcCchhh
Q 000146 946 S--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--------KKHMRECTLTV----LDAWLAAVHLDKM 1011 (2052)
Q Consensus 946 s--N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~--------k~~VR~aa~~a----L~~i~~~~~l~~l 1011 (2052)
. ...+...++++|..|++.-. +|...+++.+++.-.+. ......+...+ |..+.++-....+
T Consensus 126 ~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~~~ 201 (239)
T PF11935_consen 126 PHISSPLLTAIINSLSNIAKQRP----QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASSPF 201 (239)
T ss_dssp TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGGGG
T ss_pred cccchHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCchhh
Confidence 4 47788888888888886533 34566777776544333 33334444444 4444444344466
Q ss_pred HHHHHHHHh
Q 000146 1012 VPYVTTALT 1020 (2052)
Q Consensus 1012 l~~l~~~L~ 1020 (2052)
-+.|..+|.
T Consensus 202 ~~~i~~~L~ 210 (239)
T PF11935_consen 202 QGRITQALT 210 (239)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 242
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=50.38 E-value=4.9e+02 Score=30.67 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhc--------cCcHHHHHHHHHHHHHHHHh------cCCC-HHHH
Q 000146 380 VAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLK--------EKKPTVAESLTQTLQAMHKA------GCLN-LVDV 443 (2052)
Q Consensus 380 V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klk--------dkK~~V~~aa~~aL~ai~~~------~~~~-l~~l 443 (2052)
++..++.++..+...=.-.|.+| +..+++.+...+. +....+-..+.+.+..++.+ ++.+ +-.+
T Consensus 4 ~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~ 83 (223)
T PF10441_consen 4 SILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSV 83 (223)
T ss_pred HHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHH
Confidence 44455555555544333335554 5555555555442 23345666677777777665 1222 3444
Q ss_pred HHHHHHHhh-------cCChHHHHHH--HHHHHHHHHhc-Ch---------------------hHHHHhhhhHHHHHHHh
Q 000146 444 VEDVKTSVK-------NKVPLVRSLT--LNWVTFCIETS-SK---------------------AAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 444 l~~l~~~L~-------~Knp~vR~~~--l~~L~~~l~~~-~~---------------------~~l~~~l~~l~p~l~k~ 492 (2052)
+..++..+- .+....-.++ +.-++|+++.. .+ ..+.+++.-++-.-+.+
T Consensus 84 l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~ 163 (223)
T PF10441_consen 84 LQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISL 163 (223)
T ss_pred HHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445554443 2222222222 44555555432 11 22223333332222333
Q ss_pred h--cCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHh
Q 000146 493 L--NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540 (2052)
Q Consensus 493 l--~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~ 540 (2052)
. ..=.++||++=..++-.+..+.++..++-+...||..-|.-+++.++
T Consensus 164 ~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 164 QLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 2 35678999999999999999999888888888899988877777654
No 243
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.19 E-value=82 Score=44.40 Aligned_cols=133 Identities=21% Similarity=0.216 Sum_probs=86.1
Q ss_pred cCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHH
Q 000146 1221 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1300 (2052)
Q Consensus 1221 ~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~L 1300 (2052)
-+..-|.-.|++|..++.+-++..+. |..|||+-.-++|.|.+|-++||..|..|+.. + |-...|-..
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~--~--------~~~~~L~lF 366 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK--D--------EDKDKLELF 366 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc--c--------ccchHHHHH
Confidence 45667999999999999888877665 78899999999999999999999999987655 1 111222222
Q ss_pred HHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhc
Q 000146 1301 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTA 1380 (2052)
Q Consensus 1301 v~K~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~ 1380 (2052)
+.+ ++.++ +++.+ +--|.-+|+..|-.+..+ -..|+ .+.+-+-.|-.+|-
T Consensus 367 tsR-------FK~RI---VeMad----------------rd~~~~Vrav~L~~~~~~-~~~g~---L~d~di~~Vy~Li~ 416 (1048)
T KOG2011|consen 367 TSR-------FKDRI---VEMAD----------------RDRNVSVRAVGLVLCLLL-SSSGL---LSDKDILIVYSLIY 416 (1048)
T ss_pred HHH-------HHHHH---HHHHh----------------hhcchhHHHHHHHHHHHH-hcccc---cChhHHHHHHHHHh
Confidence 222 22222 22211 223444555555443332 11233 24456777888888
Q ss_pred CCChHHHHHHHHHHH
Q 000146 1381 ERDGEIRKAALNTLA 1395 (2052)
Q Consensus 1381 drd~~VR~AAl~~l~ 1395 (2052)
|.++.|+.||-..+.
T Consensus 417 d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 417 DSNRRVAVAAGEFLY 431 (1048)
T ss_pred ccCcchHHHHHHHHH
Confidence 888888888876665
No 244
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.22 E-value=2.2e+02 Score=41.28 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCC-CCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhh
Q 000146 1247 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY-SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN 1324 (2052)
Q Consensus 1247 ~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y-~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~ 1324 (2052)
|.| |+.|+..|=+-.+++|...++..+.++ +.+.+| .+..+ .+|...+.|+||....||+....+|+.+..
T Consensus 501 N~d-Ll~~~IdrCYss~~~va~gYF~vlaev---~~~~~~~~~~~~---~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 501 NPD-LLDWVIDRCYSSSPRVAEGYFTVLAEV---FSEREYPPCPFW---ELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred hHH-HHHHHHHHhcCCChhHHHHHHHHHHHH---HHcCCCCCCCHH---HhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 345 678888887778899988877766655 455554 55554 477888999999999999999999987764
No 245
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=47.20 E-value=1.6e+03 Score=35.72 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=78.0
Q ss_pred hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCc---
Q 000146 933 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHL--- 1008 (2052)
Q Consensus 933 ~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~-~VR~aa~~aL~~i~~~~~l--- 1008 (2052)
+.+...+...+.|..+.+...++.+++.|+...|.....+++.+++.+.+.++|... .-|.++..++..+....|+
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~ 726 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD 726 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence 677788888888998999999999999999999999989999888999999998554 5678888999888887652
Q ss_pred -----hhhHHHHHHHHhcCccChhHHHHHHHHHH
Q 000146 1009 -----DKMVPYVTTALTDAKLGAEGRKDLFDWLS 1037 (2052)
Q Consensus 1009 -----~~ll~~l~~~L~~~k~np~~R~~~l~~L~ 1037 (2052)
+.++..+...+...- ...+|.+++.-+-
T Consensus 727 p~~~~P~ll~~l~~~~~te~-~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 727 PYLDYPELLDILINILKTEQ-SSTIRREAIRLLG 759 (2341)
T ss_pred ccccChHHHHHHHHHHhHhh-hhHHHHHHHHHhh
Confidence 344444444444321 2345555554443
No 246
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=46.41 E-value=1.7e+02 Score=36.72 Aligned_cols=96 Identities=18% Similarity=0.034 Sum_probs=61.9
Q ss_pred hhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH----hcChhH
Q 000146 404 RFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TSSKAA 477 (2052)
Q Consensus 404 ~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~-~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~----~~~~~~ 477 (2052)
..++..++..+ ||.+..+..++..++...+.+. ..-.+.+++.+..+|++|.+.+|..-+..+..++. ......
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 33444444443 6788888888888887777662 23357889999999999999999999999888886 111122
Q ss_pred HHHhhhhHHHHHHHhhcCCChH
Q 000146 478 VLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
....++.+...+.++...+.+.
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 2233444444444444554443
No 247
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=46.00 E-value=1.8e+02 Score=33.66 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=60.1
Q ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 000146 367 RTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 446 (2052)
Q Consensus 367 ~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~ 446 (2052)
..+...++=.-..+-...+++++.+...+|....++...++..|-+.-.+..-..++.+..|+.+.+.. .+++.++..
T Consensus 3 ~~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a--mGpe~vL~~ 80 (198)
T PF08161_consen 3 ATLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA--MGPEQVLSI 80 (198)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH--CCHHHHHHH
Confidence 334444432222345566889999999999988888888888888777777778899999999999986 788888876
Q ss_pred HH
Q 000146 447 VK 448 (2052)
Q Consensus 447 l~ 448 (2052)
+-
T Consensus 81 lP 82 (198)
T PF08161_consen 81 LP 82 (198)
T ss_pred CC
Confidence 63
No 248
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=45.44 E-value=1.6e+02 Score=31.51 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000146 359 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 438 (2052)
Q Consensus 359 ~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~ 438 (2052)
+..+.+++..+...++. +..-....+.++..+.+.+.. +. +.-+ ..+++..+.++....
T Consensus 21 P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-~~---~~~~------~~~r~~~l~~~l~~~---------- 79 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-FR---RSSL------SQERRRELKDALRSN---------- 79 (148)
T ss_dssp TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-SH---CCHS------HHHHHHHHHHHHHHH----------
T ss_pred hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-hh---chhh------hHHHHHHHHHHHHHH----------
Confidence 34456666666666654 355566666677666665543 10 0000 011122222222222
Q ss_pred CHHHHHHHHHHHhh---cC-ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 439 NLVDVVEDVKTSVK---NK-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 439 ~l~~ll~~l~~~L~---~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
.+.+++.+...+. +. +..+...++..+..++.-.+...+.. ..+++.+.+.+ .+++.|++|.+||
T Consensus 80 -~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 -SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp -HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 2334444444443 22 27888889999888888444443322 45889999999 4555599999986
No 249
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.11 E-value=36 Score=28.37 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
-.+|.|+++|.+.+++||..|.-+++.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998764
No 250
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.55 E-value=9.9e+02 Score=32.59 Aligned_cols=113 Identities=11% Similarity=0.079 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc---hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS---NKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds---N~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
...+-.++.-+|..|+.+= ..+.+..|...+.+. ...++..|+..+..++. .+-..+.+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~-------~~~~~v~~ 561 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK-------HCPEKVRE 561 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG-------T-HHHHHH
T ss_pred hccCHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhh-------cCcHHHHH
Confidence 3445566667777765441 245666676666443 56677777766554421 11222333
Q ss_pred HHHHHhCCC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHH
Q 000146 979 DILKCLGDN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 979 ~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
.++..+.|. ...||-|| +..++..-+-..++..|...+.... +.+++.-+..+|
T Consensus 562 ~l~~I~~n~~e~~EvRiaA---~~~lm~~~P~~~~l~~i~~~l~~E~-~~QV~sfv~S~L 617 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAA---YLILMRCNPSPSVLQRIAQSLWNEP-SNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHH---HHHHHHT---HHHHHHHHHHHTT-S--HHHHHHHHHHH
T ss_pred HHHHHhcCCCCChhHHHHH---HHHHHhcCCCHHHHHHHHHHHhhCc-hHHHHHHHHHhc
Confidence 333333332 23477775 3444454455666777777776443 466666655544
No 251
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=44.54 E-value=32 Score=29.28 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.4
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1050 AHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1050 ~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
..+...+..+|.|.++.||++|.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666688899999999999998653
No 252
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=44.23 E-value=4.7e+02 Score=29.25 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHh
Q 000146 420 TVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMEC 492 (2052)
Q Consensus 420 ~V~~aa~~aL~ai~~~~~~~----l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~ 492 (2052)
.+-.-+..|+..++.++-++ -+.++..+......+ ++.+-+.++..|..++.+.+.. ....- +--++.+..+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHHH
Confidence 45555666777777764323 245667777766533 5789999999999998864321 11111 2356788899
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 493 LNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 493 l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
|.+++++++..|...+-++....++..-..+.+.|
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999998888777754333333333
No 253
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.46 E-value=2.2e+02 Score=37.21 Aligned_cols=165 Identities=13% Similarity=0.179 Sum_probs=100.0
Q ss_pred hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhC-hhhHHhhhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcC---
Q 000146 933 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMG-PAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVH--- 1007 (2052)
Q Consensus 933 ~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg-~~~~~~~~~llp~ll~-~l~D~k~~VR~aa~~aL~~i~~~~~--- 1007 (2052)
+-|++.+...|..--...+--++++++.+..... ..+.+....++|.++. .+-+.+.+| -+....|.+++++.+
T Consensus 116 ~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 116 EALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp HHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh
Confidence 4466777777744444556677788888888766 5666666777777775 556666666 666677777776643
Q ss_pred -----chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcC-CCCHHHHHHHHHHHHHH
Q 000146 1008 -----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMT-DKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1008 -----l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~-D~~~dVRkaA~~~L~~l 1078 (2052)
+..++..+-..+.++. + -.+.+..|...+..++. .+.+..++..++..|+ -+....++.-.-.+..+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~-~---D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKA-N---DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TT-C---HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCC-c---chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 4556666667776653 2 25566667766666654 2344555555666674 44554444444445556
Q ss_pred HHHcChhHHHHHhccCChHHHHHH
Q 000146 1079 LRAGGQETIEKNLKDIQGPALALI 1102 (2052)
Q Consensus 1079 ~~~~G~e~~~~~l~~L~~~~~~~I 1102 (2052)
....|.+.+...++++.+.--..|
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~i 294 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMI 294 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHH
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHH
Confidence 666699999999988887644333
No 254
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.92 E-value=4.8e+02 Score=32.38 Aligned_cols=171 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHh-cCCCCCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH---hhhcchhhhhhHHHHHHHH-
Q 000146 340 ERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVLLEK- 413 (2052)
Q Consensus 340 eR~eaL~~L~~L~-~~~ki~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~~~~~llp~LL~k- 413 (2052)
.=+.+|+.|..+. +.|++... ...=++..|..-..|+.. -...++++..-|.+ -|..|-. -.+++-|+.-
T Consensus 123 ~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dl--t~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li~~~l 198 (461)
T KOG4199|consen 123 VLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEV--TLLTLQWLQKACIMHEVNRQLFME--LKILELILQVL 198 (461)
T ss_pred HHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHH--HHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHHHHHH
Confidence 3456777777777 57877653 333344444443334433 22333444433322 2233311 1234444422
Q ss_pred hccCcHHHHHHHHHHHHHHHHh-------cCC-CHH------HHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 414 LKEKKPTVAESLTQTLQAMHKA-------GCL-NLV------DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 414 lkdkK~~V~~aa~~aL~ai~~~-------~~~-~l~------~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+.|..++.++..++.++... +|. ... -++-.+.++++ .-.|.+=.+.+..|.++.-+. .+
T Consensus 199 ~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~---E~ 275 (461)
T KOG4199|consen 199 NREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD---EI 275 (461)
T ss_pred cccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH---HH
Confidence 3566666666677777776532 111 111 12223334443 112544444444444432110 00
Q ss_pred HHhhhhH-----HHHHHHhhcC-CChHHHHHHHHHHHHHHHHhCChhH
Q 000146 479 LKVHKDY-----VPICMECLND-GTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 479 ~~~l~~l-----~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
.+.+ +..+..|+.| ....+|..+.+|+..+..+.|....
T Consensus 276 ---C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 276 ---CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred ---HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 1111 3467889999 5568999999999999999997643
No 255
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.82 E-value=5e+02 Score=33.17 Aligned_cols=170 Identities=15% Similarity=0.065 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccC
Q 000146 338 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK 417 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk 417 (2052)
=-||..||+-+++++..++-...--..++++|..+..+..-+.+..|+.++..++-.--.-+. ...-+..|++.+.|.
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~--~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA--ECGGIRVLLRALIDG 159 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH--HcCCHHHHHHHHHhc
Confidence 357999999999987432211111246888888888877777888888887777643221111 112235555666665
Q ss_pred cHHHHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHh---hcCCh--HHHHHHHHHHHHHHHhcChhH-HHHhhh
Q 000146 418 KPTVAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSV---KNKVP--LVRSLTLNWVTFCIETSSKAA-VLKVHK 483 (2052)
Q Consensus 418 K~~V~~aa~~aL~ai~~~~~--------~~l~~ll~~l~~~L---~~Knp--~vR~~~l~~L~~~l~~~~~~~-l~~~l~ 483 (2052)
...+.+++..++-.++.+.. ..++.++..+...- ...+. ..-..+...+..++.+|+-=- +...=.
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~ 239 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF 239 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc
Confidence 44477788888877776511 12333333333321 11222 123355666777788875310 000001
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
.-+..++.+|.-+.+++|+.-.+.+-
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556777778888888887765553
No 256
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.47 E-value=4.5e+02 Score=31.72 Aligned_cols=88 Identities=11% Similarity=0.232 Sum_probs=64.9
Q ss_pred hHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhh--cCCChhhHHHHHHHHHHHHHhhCCCcccccchHHH
Q 000146 1297 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQI 1374 (2052)
Q Consensus 1297 lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl--~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l~~ 1374 (2052)
+-.|++-+++.-.-+|-.+--++.++..- --.|+|.++| ..-|+=+|-||.+.||.+ +..++++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~v 255 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSP----AAIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEV 255 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccch----hhhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHH
Confidence 34556666666666666666666555432 2356666666 477899999999999986 56678899
Q ss_pred HHHHhcCCChHHHHHHHHHHHHH
Q 000146 1375 VASLTAERDGEIRKAALNTLATG 1397 (2052)
Q Consensus 1375 ia~~i~drd~~VR~AAl~~l~~~ 1397 (2052)
+.+..+|-++-||..+.-+|-..
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999988877644
No 257
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.14 E-value=5.2e+02 Score=30.67 Aligned_cols=120 Identities=11% Similarity=0.121 Sum_probs=74.0
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhh-
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK- 452 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~- 452 (2052)
+.+..+......++..++..... +...+++.|-..+ ++..+.++..+.+++..++.+....+......|..-+.
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~ 170 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSL 170 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCC
Confidence 44444555555677777765544 7778888888888 78888999999999999998633444444444444443
Q ss_pred cCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHhhcCCCh
Q 000146 453 NKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTP 498 (2052)
Q Consensus 453 ~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~ 498 (2052)
.+.|.+=...+.|+..+-... ...........++..+-+.....+.
T Consensus 171 ~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 171 DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 445666666666665322211 1222333445566666666666663
No 258
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.59 E-value=1.9e+02 Score=40.59 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCCCCC-CC-hHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHHHhcc
Q 000146 341 RKDAVAELTKLASTKRIAP-GD-FTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLKE 416 (2052)
Q Consensus 341 R~eaL~~L~~L~~~~ki~~-~d-y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klkd 416 (2052)
|--|.--|..++.+-++-. .. -++++......++| ..+-++.-.|-|||.|=..... .|.-.-..-.--|+..++|
T Consensus 574 rtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD 653 (1387)
T KOG1517|consen 574 RTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD 653 (1387)
T ss_pred HHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC
Confidence 3333334555654422211 11 23566666677776 5788999999999998765432 2322222334456777899
Q ss_pred CcHHHHHHHHHHHHHHHHhcC--------------------CCHHHHHH----HHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000146 417 KKPTVAESLTQTLQAMHKAGC--------------------LNLVDVVE----DVKTSVKNKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 417 kK~~V~~aa~~aL~ai~~~~~--------------------~~l~~ll~----~l~~~L~~Knp~vR~~~l~~L~~~l~~ 472 (2052)
.-+.||.|+.-||.+++.++. +..++++. .++..+++..|.+|.+...+|..++-.
T Consensus 654 ~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 654 PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 999999999999999998521 11233333 334455667777777777777665543
No 259
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=40.45 E-value=73 Score=35.38 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----hh----hhhHHHHHHH
Q 000146 103 SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL----EA----VDVFLDVMEK 174 (2052)
Q Consensus 103 sN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~----~~----~~~v~e~Ll~ 174 (2052)
....+.-.++-++..+++.++..+...+.+.+..++++. .....-.++.++..++-. .+ .+.+++.+.+
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 455566788888888887777766666667766666552 222344455555544433 22 3678888888
Q ss_pred Hhh--ccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCC-Chh-HHHHHHHHHH
Q 000146 175 AIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ-DQN-VRASSKGLTL 232 (2052)
Q Consensus 175 ~l~--~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~-dk~-VR~~a~~l~v 232 (2052)
... .++.++..+++++|..+...-.....-.+..+++|..++.+. |.. ||-.|.-.++
T Consensus 94 ~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 94 LASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 887 788899999999887654322222223566788888888644 455 6776655443
No 260
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.24 E-value=2.4e+02 Score=38.61 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhcccc---------CCCCChhhHHHHHHhhh----ccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 907 KVRLESIEAVNKILEEANKR---------IQPAGTGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~---------I~~~~~~eL~~aL~~rL----~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
..|..++-.+..++...-.. -......++++.|...| ...+..-+..+|+.||.+..
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------- 519 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------
T ss_pred hHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------
Confidence 35677777777777632111 01111234444444444 44455667777887776531
Q ss_pred hHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchh
Q 000146 974 KGVLSDILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1050 (2052)
Q Consensus 974 ~~llp~ll~~l~D~---k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~ 1050 (2052)
...++.+...+.+. ...+|.+|+.+|..++..+ .+.+.+.+.+.+.+...++++|..++..|.+.- + -.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P----~~ 591 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDPEVRIAAYLILMRCN---P----SP 591 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------H
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---C----CH
Confidence 23455555555444 6789999999999875544 467778888888875556899999887776421 1 13
Q ss_pred hhHHHHHhhc-CCCCHHHHHHHHHHH
Q 000146 1051 HLLKPASIAM-TDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1051 ~ll~pl~~~L-~D~~~dVRkaA~~~L 1075 (2052)
..+..+...+ .|++..|+......|
T Consensus 592 ~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 592 SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 3455555555 788999888766544
No 261
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=39.03 E-value=2.1e+02 Score=34.34 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc-
Q 000146 340 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK- 418 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK- 418 (2052)
+|.-|+-.|+.+. -.+-+.+|..-+.|.....+.++.-|+|+|- .+.-+|.|.+.+.|.+
T Consensus 172 ~Ry~amF~LRn~g---------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 172 ERYRAMFYLRNIG---------TEEAINALIDGLADDSALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETE 232 (289)
T ss_pred HHHhhhhHhhccC---------cHHHHHHHHHhcccchHHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhc
Confidence 3445666565442 2355777888888667888888888888873 3445777788787765
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000146 419 -PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC 469 (2052)
Q Consensus 419 -~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~ 469 (2052)
+-||-.+.+||.++.. ++.++.|...+++-.+-||++|...|..+
T Consensus 233 ~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred chHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 6688888888887764 57788888888888899998887776653
No 262
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.90 E-value=4.6e+02 Score=36.28 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=77.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh-
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK- 483 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~- 483 (2052)
.++..|++.+-.++.. .+++.++......-..++..|-..+. ++.-|..++.+|..++...+.- +.+.+.
T Consensus 39 ~l~~~l~~y~~~t~s~------~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ------RALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPW-LYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCcH------HHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCch-HHHHhcC
Confidence 4677788877666532 22222332212333667777766665 5689999999999999877653 233332
Q ss_pred hHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhcc
Q 000146 484 DYVPICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 528 (2052)
Q Consensus 484 ~l~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld 528 (2052)
.+.+.|.+|| .|.+..|=..|.-+|..+.-++... +.+++..|-
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~Lf 154 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPDLF 154 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHHHH
Confidence 4677777777 6999999999999999888888754 567777654
No 263
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=38.81 E-value=3.2e+02 Score=30.49 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=67.0
Q ss_pred HHHHHHHhhcC---CChhHHHHHHHHHHHHHhhhh------hhhHHHHHHHHhhc--cChhhHHHHHHHHHHHHHH----
Q 000146 133 VCDAIAAKCLT---GRPKTVEKAQAVFMLWVELEA------VDVFLDVMEKAIKN--KVAKAVVPAIDVMFQALSE---- 197 (2052)
Q Consensus 133 vi~~LieK~L~---~r~~tk~~A~~~~l~~~e~~~------~~~v~e~Ll~~l~~--K~PKvv~~~l~~L~~~l~~---- 197 (2052)
++-.+||.+-. ....+-.-++.++..++|.+- .+.++..+....+. +.+.+...|+.+|..++.+
T Consensus 15 ~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l 94 (160)
T PF11841_consen 15 LLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL 94 (160)
T ss_pred HHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH
Confidence 34445565321 023455567888888888642 13344444444433 2477888999999887764
Q ss_pred hCC--CCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCC
Q 000146 198 FGA--KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240 (2052)
Q Consensus 198 FG~--~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~ 240 (2052)
|+. +.++ ++.|...|+..|..+...|+.++-.|+...++
T Consensus 95 y~~V~~evt----~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 95 YQLVEQEVT----LESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhccCC----HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 222 2234 45556667779999999999999999988864
No 264
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.88 E-value=1.7e+03 Score=33.44 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=72.9
Q ss_pred HHhChhhHHhhhHHHHHHH-HHhC-----CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh----cCccChhHHHHH
Q 000146 963 SAMGPAVEKSSKGVLSDIL-KCLG-----DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT----DAKLGAEGRKDL 1032 (2052)
Q Consensus 963 ~alg~~~~~~~~~llp~ll-~~l~-----D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~----~~k~np~~R~~~ 1032 (2052)
....+.+.+|...+.+..+ -+++ |... -..++..|..-+.....-..+.+.+...+. +. .+..+|..+
T Consensus 1470 ~~~~~~~~kyl~~~~~~~~~~~~~~~~y~~~d~-a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~-~tw~vr~av 1547 (1710)
T KOG1851|consen 1470 STLVKLLPKYLPDLIADDLYPCLGENTYRDVDL-AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS-STWRVRSAV 1547 (1710)
T ss_pred HHHHhcchhhhhhhhcccccccccccccccchH-HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc-chHHHHHHH
Confidence 3334445556555555442 2233 2222 233344455544444433344444443333 32 257899999
Q ss_pred HHHHHHHhccCC-C--CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHH
Q 000146 1033 FDWLSKQLTGLS-G--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1033 l~~L~~~l~~~~-~--~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~ 1088 (2052)
+.|+...+-... . .....++-+-+...|+|..-+||+.|++||..|+..-..+...
T Consensus 1548 l~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~ 1606 (1710)
T KOG1851|consen 1548 LKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS 1606 (1710)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch
Confidence 999887654322 1 2344566677888899999999999999999998776654433
No 265
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.29 E-value=1.8e+02 Score=40.75 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=53.7
Q ss_pred hhHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000146 933 GELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 933 ~eL~~aL~~rL~Ds-N~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~ 1006 (2052)
++++..-...|+|. .+-+++-.|.||+.|-.-....=..-. ..-.-.++..|.|+-+.||.||.-||++++...
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 66777777888885 688999999999988654332211111 112345677889999999999999999998853
No 266
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=37.29 E-value=1.1e+02 Score=31.52 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 440 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 440 l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
.+.++-.+..+|.|=++.||..++.||.-+++.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4567778889999999999999999999999988754
No 267
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=36.20 E-value=2.1e+02 Score=29.94 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=53.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
.+|+.+..++..+.....=|++..-. -..+++.+...+..-.+.-|...+=.+..++.++.......+...+.|.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~-----a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~ 78 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASH-----AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPV 78 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 45566666777777666666654432 2467777776666555555665555555666655332111222333333
Q ss_pred HH----HhhcCCChHHHHHHHHHHHHHH
Q 000146 489 CM----ECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 489 l~----k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
+. .+.+..++++|+...+.+...-
T Consensus 79 ~~~~~~~~~~~~~~~~~~ki~kll~iW~ 106 (121)
T smart00582 79 FQDALRDVLGAANDETKKKIRRLLNIWE 106 (121)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 33 3334444667766666664443
No 268
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=36.03 E-value=2.2e+02 Score=30.53 Aligned_cols=118 Identities=15% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh----------------hhHHh
Q 000146 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP----------------AVEKS 972 (2052)
Q Consensus 909 R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~----------------~~~~~ 972 (2052)
|......+..++. +-.|....+++.-+...+.. +..-....+.++..+...... .+..+
T Consensus 5 ~~kl~~~l~~i~~----~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 5 RNKLAQVLAEIAK----RDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHH----HHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 3333444444443 23344445555555555544 344444555555555544432 12333
Q ss_pred hhHHHHHHHHHhCC---Cc-HHHHHHHHHHHHHHHHhcCch-----hhHHHHHHHHhcCccChhHHHHHHHH
Q 000146 973 SKGVLSDILKCLGD---NK-KHMRECTLTVLDAWLAAVHLD-----KMVPYVTTALTDAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 973 ~~~llp~ll~~l~D---~k-~~VR~aa~~aL~~i~~~~~l~-----~ll~~l~~~L~~~k~np~~R~~~l~~ 1035 (2052)
...++..+.+.+.. .. ..+...+..|+.+|+...++. .+++.+...|.+ +..+..+++.
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~----~~~~~~A~~c 147 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS----PELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS----CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC----HHHHHHHHHh
Confidence 33444444343333 22 778888888999888866532 355566666643 3345555544
No 269
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=35.15 E-value=3.3e+02 Score=37.60 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=64.0
Q ss_pred hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh-HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--c
Q 000146 933 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH--L 1008 (2052)
Q Consensus 933 ~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~-~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~--l 1008 (2052)
.+++..|-..|.. ..-+..+|.+++.++..-++.+-+.+. .+++.|+++|. |....+..+|..+|-.++-+++ +
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 5666666666665 456678889999999888888777766 58899999886 8888999999999999988875 3
Q ss_pred hhhHHHHHHH
Q 000146 1009 DKMVPYVTTA 1018 (2052)
Q Consensus 1009 ~~ll~~l~~~ 1018 (2052)
...+|.|...
T Consensus 147 ~~~L~~Lf~I 156 (668)
T PF04388_consen 147 GPHLPDLFNI 156 (668)
T ss_pred hHHHHHHHHH
Confidence 4455544443
No 270
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.07 E-value=1.5e+03 Score=32.05 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=114.2
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHH-----------------
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL----------------- 955 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al----------------- 955 (2052)
+..-++..+-|+.--+|..|+..+.++++-...+.- +.++.++..--.|.-..++..+-
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~----~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA----FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch----HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 444567778888889999999999888862111100 22222222222222222221111
Q ss_pred -------HHHHHH-HHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---cCc
Q 000146 956 -------ITLGAV-ASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAK 1023 (2052)
Q Consensus 956 -------~~l~~l-a~alg~~~~~~~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~---~~k 1023 (2052)
+++... .+.+++.-..+-+-++--|+.++. |.|.+|+.++...+..+..+|....++|..+-.|+ ...
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence 111111 122333333445667778888888 99999999999999999999998888886544444 222
Q ss_pred cChhHHHHHHHHHHHHhccCCCCC-chhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1024 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1024 ~np~~R~~~l~~L~~~l~~~~~~~-~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
. ..+|..+++-|.+.+-..+.-. --+.++..++..++|...+|-+.|.+.+..+
T Consensus 629 ~-vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 629 M-VSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred c-hHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2 4578899999988765544322 2356777788889999999999999865544
No 271
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.35 E-value=4e+02 Score=36.13 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=75.4
Q ss_pred hhHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHhCh-h--h-HHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHH
Q 000146 933 GELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGP-A--V-EKSSKGVLSDILKCL----GDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 933 ~eL~~aL~~rL~D----sN~~V~~~Al~~l~~la~alg~-~--~-~~~~~~llp~ll~~l----~D~k~~VR~aa~~aL~ 1000 (2052)
.+++..|...+.+ .+..+...|+-.++.++...-. . + ...+..+++.+.+.| .+.....+..++.+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5666666665543 3556778888888877763221 1 1 111233444444433 3344444555555555
Q ss_pred HHHHhcCchhhHHHHHHHHh-cCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1001 AWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1001 ~i~~~~~l~~ll~~l~~~L~-~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
+.|....++.+...+. +...++.+|..++..|.+.....+. .+...+.+++.- .+.+.+||-+|..+|
T Consensus 472 ----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--~v~~~l~~i~~n-~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 ----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--KVQEVLLPIYLN-RAEPPEVRMAAVLVL 540 (574)
T ss_pred ----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHcC-CCCChHHHHHHHHHH
Confidence 3566666676776665 3333567899988888754433321 223333333311 345789999986544
No 272
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.21 E-value=8.6e+02 Score=30.11 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=75.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCC----ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH--Hhhhcch
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG----DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 400 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~----dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~--~L~~~f~ 400 (2052)
.|...+...+|.....|+.-|..++. .+..... .+..++..|...++..+..+...|++|++.|.+ ..|..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 47777888899999999999998874 3332222 234445555554444455567888999998875 4555552
Q ss_pred hhhhhHHHHHHHHh----ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 401 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 401 ~~~~~llp~LL~kl----kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
. ...++.++..+ ..++....+-.-.++-.+..- +.. +.+...+.+++ ....|..++..+.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~-----~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFE-----PEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTS-----HHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcC-----HHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 2 33444444444 234444455555555555443 222 22223333333 344555555554433
Q ss_pred HHHHhhhhHHHHHHHhhcCCCh
Q 000146 477 AVLKVHKDYVPICMECLNDGTP 498 (2052)
Q Consensus 477 ~l~~~l~~l~p~l~k~l~Ds~~ 498 (2052)
+.+.-.+-.+..+++....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSST
T ss_pred ---hHHHHHHHHHHHHHhccHH
Confidence 2334455556666654443
No 273
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.93 E-value=4.2e+02 Score=35.90 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCC----CChhhHHHHHHhhhc----cchHHHHHHHHHHHHHHHHHhChhhHHhhhHH
Q 000146 905 DWKVRLESIEAVNKILEEANKRIQP----AGTGELFGGLRGRLY----DSNKNLVMATLITLGAVASAMGPAVEKSSKGV 976 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a~~~I~~----~~~~eL~~aL~~rL~----DsN~~V~~~Al~~l~~la~alg~~~~~~~~~l 976 (2052)
....|..++-.+..++... ..=.+ ....++.+.|...|. +.+...+...|+.||.+.. . .-+..+
T Consensus 410 ~~~l~~sa~l~~~~lv~~~-c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~--~~i~~l 482 (574)
T smart00638 410 QPYLRESALLAYGSLVRRY-CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----P--SSIKVL 482 (574)
T ss_pred cHHHHHHHHHHHHHHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----h--hHHHHH
Confidence 4567888888888888632 11111 112456666665553 3344455666666664331 1 111222
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHH
Q 000146 977 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1056 (2052)
Q Consensus 977 lp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl 1056 (2052)
.|-+. .-.+....+|.+|..+|..++..++ ..+.+.+...+.+...++++|..++-.|.+. .+ . ...+.-+
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P---~-~~~l~~i 553 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDP-RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET---KP---S-VALLQRI 553 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC---C-HHHHHHH
Confidence 22222 1223456899999999998877553 5666777777776555689998888776542 11 1 2334444
Q ss_pred Hhhc-CCCCHHHHHHHHH
Q 000146 1057 SIAM-TDKSSDVRKAAEA 1073 (2052)
Q Consensus 1057 ~~~L-~D~~~dVRkaA~~ 1073 (2052)
...+ .|++..|+.....
T Consensus 554 a~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 554 AELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHhhcCcHHHHHHhHH
Confidence 4444 6888888876543
No 274
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=1.5e+03 Score=31.39 Aligned_cols=372 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhChh-hHHhhhHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHhcC------------chhhHHHHHH
Q 000146 952 MATLITLGAVASAMGPA-VEKSSKGVLSDI-LKCLGDNKKHMRECTLTVLDAWLAAVH------------LDKMVPYVTT 1017 (2052)
Q Consensus 952 ~~Al~~l~~la~alg~~-~~~~~~~llp~l-l~~l~D~k~~VR~aa~~aL~~i~~~~~------------l~~ll~~l~~ 1017 (2052)
.+|+.++-.++..-++. |...+.-++..+ -..-++.+-.....+..||..++.... -.-+++.+.+
T Consensus 388 laal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P 467 (970)
T COG5656 388 LAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Q ss_pred HHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1018 ~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+++++ .--+|..+|+++.+.=..++...-...+.....+|+.+.+-.||-.|.-||..|+.+- .+...+..+-|.
T Consensus 468 ~f~s~--ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~---q~h~k~sahVp~ 542 (970)
T COG5656 468 AFRSN--YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE---QSHEKFSAHVPE 542 (970)
T ss_pred hhcCc--ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch---hhhHHHHhhhhH
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCc
Q 000146 1098 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSN 1177 (2052)
Q Consensus 1098 ~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1177 (2052)
.+.++...-..... +.=++-
T Consensus 543 tmekLLsLSn~fei----------------------------------------------------D~LS~v-------- 562 (970)
T COG5656 543 TMEKLLSLSNTFEI----------------------------------------------------DPLSMV-------- 562 (970)
T ss_pred HHHHHHHhcccccc----------------------------------------------------hHHHHH--------
Q ss_pred hHHHhhhhhccccccCCChhHHHHHHHHHHhhhhH------------HHHHhhcCcCHH-----HHHHHHHHHHHhcCcC
Q 000146 1178 KEDRERMVVRRFKFEDPRIEQIQELENDMMKYFRE------------DLHRRLLSTDFK-----KQVDGLEMLQKALPSI 1240 (2052)
Q Consensus 1178 k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~------------~l~~~lfs~D~k-----~~l~al~~L~~~l~~~ 1240 (2052)
-++.|++--++.+++.++ ..-..+-++|+- ++++|...|...
T Consensus 563 -----------------Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~---- 621 (970)
T COG5656 563 -----------------MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTI---- 621 (970)
T ss_pred -----------------HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHH----
Q ss_pred hhhhHH--HHHHHHHHHHHhhcCc-cHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCC-ChHHHH-HHH
Q 000146 1241 RKDIIE--VLDILLRWFVLQFCKS-NTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVR-EKM 1315 (2052)
Q Consensus 1241 ~~~~i~--~lDlllk~l~lr~~dt-N~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd-~k~~vr-~~v 1315 (2052)
..-+.+ |.-.++|++---+.+- ++-+.....||..+.++.+.. |.+.-.|...+.+.+.+++|+ +++..- .-+
T Consensus 622 ~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg--~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ 699 (970)
T COG5656 622 ESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDG--YTFMSKEIEPIMWGIFELLLNLLIDEITAVYS 699 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--hhHHHHHhhhhhhHHHHHHHhcccccchhhhH
Q ss_pred HHHHHHHhhcCCcc------------ccHHHHHhhhcCCCh--hhHHHHHHHHHHHHHhhCCCcccccchH--HHHH--H
Q 000146 1316 RELTKQIVNFYSAT------------KTLPYILEGLRSKNN--RTRIECVDLVGFLIDHHGAEISGQLKSL--QIVA--S 1377 (2052)
Q Consensus 1316 ~~il~~~~~v~p~s------------kvf~~l~~gl~sKN~--r~R~ecl~~l~~li~~~G~~~~~~~K~l--~~ia--~ 1377 (2052)
.+....+..+...- -++.+++..+.+--. --+....+.+..++-.++-+...+-.++ +.++ -
T Consensus 700 ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l 779 (970)
T COG5656 700 EEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGL 779 (970)
T ss_pred HHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhh
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 000146 1378 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1411 (2052)
Q Consensus 1378 ~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~~g~ 1411 (2052)
...|.++--+-.|++.+.....+..-.-..++.+
T Consensus 780 ~~~dElg~~sv~aleliinnli~~P~eTLqiLe~ 813 (970)
T COG5656 780 KMIDELGPASVYALELIINNLILRPKETLQILEE 813 (970)
T ss_pred hccccccchhhhHHHHHHHHHhcChHHHHHHHHH
No 275
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.13 E-value=4.1e+02 Score=27.58 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCC
Q 000146 417 KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 496 (2052)
Q Consensus 417 kK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds 496 (2052)
+++.|.....-|+...- .-..+++.+...++...|.-|...+=.+..++.++....-......+.+.+..+....
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~ 91 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV 91 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC
Confidence 44555444444444332 2256667676777766777777777777777777643322222233466666666677
Q ss_pred ChHHHHHHHHHHH
Q 000146 497 TPEVRDAAFSVLA 509 (2052)
Q Consensus 497 ~~~VR~aA~~~l~ 509 (2052)
++.+|..-.+.+.
T Consensus 92 ~~~~r~kl~rl~~ 104 (114)
T cd03562 92 DEKTRKKLERLLN 104 (114)
T ss_pred CHHHHHHHHHHHH
Confidence 7777766555553
No 276
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.00 E-value=2e+03 Score=32.80 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 440 LVDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 440 l~~ll~~l~~-~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
...++.++.. ...+-+|.+|..++.|+...+=...-.......+.|-..+.+.++|.+-+||+.|.+|+..+++.-
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 3556666653 233667999999999998876433211122344778888999999999999999999999998664
No 277
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.98 E-value=4.8e+02 Score=33.37 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
..++.+|+..+|+||..|..|+-.+|-
T Consensus 412 e~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 412 ERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 357889999999999999999988774
No 278
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=32.61 E-value=3.6e+02 Score=29.45 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
++.-+..+|.++--++++++.++.=||+. . .--+++.+.|++.|...+-..|...+.|+..+.+.+
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~--~---~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~ 71 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN--R---DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESS 71 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc--c---ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 56677889999988888888888777775 1 234788899999998888899999999999866654
No 279
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.36 E-value=9.3e+02 Score=28.72 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=46.6
Q ss_pred hcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 000146 373 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 452 (2052)
Q Consensus 373 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~ 452 (2052)
++|.++.|+..+++|...+ .|.+|..+ ....-.+...+.+ ..+-..|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~i---------------y~~~~~~i--~~~~~~~~~W~~~-----------~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSI---------------YPLVFRWI--CVNPSDEQLWESM-----------NELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHH---------------HHHHHHHH--S--HHHHHHHHHH-----------HHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHH---------------HHHHHHHH--cCCchHHHHHHHH-----------HHHHHHHHHHhc
Confidence 5688888898888887654 33344433 1122222333322 344455777788
Q ss_pred cCChHHHHHHHHHHHHHHHhc
Q 000146 453 NKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 453 ~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
+.+|.+|..|+.|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 899999999999999998654
No 280
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=32.32 E-value=55 Score=34.63 Aligned_cols=43 Identities=28% Similarity=0.184 Sum_probs=31.6
Q ss_pred hHHHHHHhhhchhhhhhccCCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHh
Q 000146 1679 DLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1744 (2052)
Q Consensus 1679 eLv~KClwk~~k~l~~~~~~l~~~~iL~~ih~Fl~~~p~~~~r~r~~~~D~plRtvKtil~~l~k~ 1744 (2052)
.-||+-||... |.+ ..+||+++..- -|--.-||||+|..|||-
T Consensus 9 ~eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 9 WEVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 45999999987 333 35778887762 144557999999999983
No 281
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.57 E-value=3e+02 Score=34.63 Aligned_cols=118 Identities=14% Similarity=0.253 Sum_probs=83.6
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc---c
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH---F 399 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~----~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~---f 399 (2052)
.|++-+.......=-+|...+..+. .++.+. ..+|..++..+.++|...|-...+.+++.|+.|-.. +.. +
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm 246 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVM 246 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHH
Confidence 3555567777777778888888765 444433 368999999999999999999999999999998632 122 2
Q ss_pred hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000146 400 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 447 (2052)
Q Consensus 400 ~~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l 447 (2052)
.+|+ ..-+..++..++|+.++|+-.|.....-++.+ ....+.|...|
T Consensus 247 ~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~~~I~~iL 295 (335)
T PF08569_consen 247 TRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKPPPIVDIL 295 (335)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCChHHHHHH
Confidence 3553 35678888889999999999898888888887 44455555554
No 282
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=31.07 E-value=3.2e+02 Score=34.64 Aligned_cols=172 Identities=13% Similarity=0.138 Sum_probs=103.9
Q ss_pred ccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHH-------HHHhcCcCHHHHHHHHHHHHHHHHHhh--hcchh--
Q 000146 334 KATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTL-------KKLITDVNIAVAVEAIQAIGNLARGLR--THFSG-- 401 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L-------~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~-- 401 (2052)
-++-|-+|.+++-.+.++. ..| + ..-|.+.+..+ ...|.|.-..+.......|.++...+- +.|..
T Consensus 403 lcktppdqedallaaikkfgeeP-i-akikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskle 480 (666)
T KOG4825|consen 403 LCKTPPDQEDALLAAIKKFGEEP-I-AKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLE 480 (666)
T ss_pred HhcCCccchhhHHHHHHHhccCc-c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhh
Confidence 4578999999988876643 222 1 11244444443 344566666666777778887776653 23543
Q ss_pred ---hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHhh-cCChHHHHHHHHHHHHHHHhcChh
Q 000146 402 ---SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-VKTSVK-NKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 402 ---~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~-l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
++..-++.++-.-+|....++-.|.+.+..++..--..-.++++. +...++ +|.|.+-..-...|.+.+....+.
T Consensus 481 dahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgkG 560 (666)
T KOG4825|consen 481 DAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGKG 560 (666)
T ss_pred HHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCCC
Confidence 366778888888899888888877777776654311222345544 444554 777877777777788877654332
Q ss_pred --HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 477 --AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 477 --~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
-|. ....+..-+......-.++|.+|+..+.
T Consensus 561 ragfi--ediakkfgVpaeehglndkreaafaiic 593 (666)
T KOG4825|consen 561 RAGFI--EDIAKKFGVPAEEHGLNDKREAAFAIIC 593 (666)
T ss_pred ccchh--HHHHHHhCCCccccchhHHHHhHhhhhh
Confidence 121 0111222234456777788998876553
No 283
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.48 E-value=3.7e+02 Score=29.96 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHHhc-C-CCCCCC----Ch-----HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 000146 336 TKWSERKDAVAELTKLAS-T-KRIAPG----DF-----TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 404 (2052)
Q Consensus 336 ~kWkeR~eaL~~L~~L~~-~-~ki~~~----dy-----~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 404 (2052)
..+..|.=+|+.|..+.. + +.+... .+ .+++..|.+.+...++.+...+++++..+...++..+.....
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888877653 2 222211 12 345556666666555999999999999999999999988899
Q ss_pred hHHHHHHHHhccCcH---HHHHHHHHHHHHHHHh
Q 000146 405 FLLPVLLEKLKEKKP---TVAESLTQTLQAMHKA 435 (2052)
Q Consensus 405 ~llp~LL~klkdkK~---~V~~aa~~aL~ai~~~ 435 (2052)
.+++.++.++-+.+. .-+..+.+++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 999999996655332 4556677777777654
No 284
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=29.62 E-value=6.5e+02 Score=27.84 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=61.1
Q ss_pred HHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHH-HHHHHHHHHHhhcCccHHHHHHHHh-hHHHHHHHHHhcCCCCCH
Q 000146 1213 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVLE-FLPELFDTLRDEGYSLTE 1290 (2052)
Q Consensus 1213 ~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~-lDlllk~l~lr~~dtN~~vl~k~Ld-~l~~l~~~l~~~~y~l~~ 1290 (2052)
.++..||+-+-.-.-+....|...++.....++.+ .|++++- |...+........+ .|+.+++.-....|..+-
T Consensus 18 ~fls~l~~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~a----Wk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~ 93 (152)
T PF12422_consen 18 KFLSFLFSLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRA----WKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLH 93 (152)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----hHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhH
Confidence 46666766333333444455555555555544443 5555544 55554444444433 455555555554444444
Q ss_pred HhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhhcCCChhhHHHHHHHHHH
Q 000146 1291 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1356 (2052)
Q Consensus 1291 ~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~ 1356 (2052)
.-..-+|-++..+-+ +..+.+++-.+.+ |+|-.+|+..|+++|.-++..+..
T Consensus 94 ~~~R~~L~~f~~~k~------~~~v~~mL~rl~~--------PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 94 SKFREVLLSFHSQKK------RKGVDEMLLRLYE--------PILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHhccc------ccchHHHHHHHHH--------HHHHHHHcCCCcchhccHHHHHHH
Confidence 333334444433321 2223333311111 344457788888877766655443
No 285
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.62 E-value=2.3e+02 Score=35.19 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=56.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
.+|.++ .++..+++.+...++.++.. .... ......++..+.+..+.+...++..|+.++...+..
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 444444 44555666666666666554 1111 113344455667889999999999999999876554
Q ss_pred HHH---HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 477 AVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 477 ~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
... ..++.++..+...+...+.++...|..|+..+.+.
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 332 34455555555555556667778888888777633
No 286
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.19 E-value=8.8e+02 Score=30.42 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=66.1
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhh-hh------HHHHHHHHHhhc--CCC--------hhHHHHHHHH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YA------KEVCDAIAAKCL--TGR--------PKTVEKAQAV 155 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~-~~------~~vi~~LieK~L--~~r--------~~tk~~A~~~ 155 (2052)
...+-+.++.+....+..+|..|.+.+...+...++ .. -..++.+...-- ..+ +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 455566778888888889999998888844322221 11 122333332101 011 2899999999
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHhhccChhhHHHHHHHHHH-HHH
Q 000146 156 FMLWVELEAVD---------VFLDVMEKAIKNKVAKAVVPAIDVMFQ-ALS 196 (2052)
Q Consensus 156 ~l~~~e~~~~~---------~v~e~Ll~~l~~K~PKvv~~~l~~L~~-~l~ 196 (2052)
++.+++..++. .++..+.+++..--+.++...+++|.+ ++.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~ 188 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLK 188 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhcc
Confidence 99999875432 336666777777778888888888864 443
No 287
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.16 E-value=3e+02 Score=36.36 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc-CCCCHHHHHHHHHHH
Q 000146 997 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACI 1075 (2052)
Q Consensus 997 ~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L 1075 (2052)
..++.+++|++...+++.+...+... .++.+.++++||.. ..++.-++..| .+.++++..+|.++|
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs~d--~~~~~~~ilewL~~-----------q~LI~~Li~~L~p~~~~~~q~naa~~L 87 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLISTD--KPESPTGILEWLAE-----------QNLIPRLIDLLSPSYSSDVQSNAADFL 87 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHccC--cccchHHHHHHHHH-----------hCHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46788889999999999999988755 37789999999975 34566677777 567789999999999
Q ss_pred HHHHHHcC
Q 000146 1076 VEILRAGG 1083 (2052)
Q Consensus 1076 ~~l~~~~G 1083 (2052)
-+++...-
T Consensus 88 ~aII~is~ 95 (475)
T PF04499_consen 88 KAIIRISR 95 (475)
T ss_pred HHHHHHhh
Confidence 98877643
No 288
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.00 E-value=1e+03 Score=29.76 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=79.9
Q ss_pred HHHHHHhcCcCHHHHH-HHHHHHHHHHHHhhhc------chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000146 367 RTLKKLITDVNIAVAV-EAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 439 (2052)
Q Consensus 367 ~~L~k~l~D~N~~V~~-~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~ 439 (2052)
+.|..++.|+|-.=.. .+-.|+..|-.--|.+ .++-.-..+-.++.++.+ .|.|.+.+..++..++-....+
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhcCcch
Confidence 3455556665554222 3334444443333322 122223344455555554 4778888888888887652233
Q ss_pred HHHHHH-----HHHHHhh-c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 440 LVDVVE-----DVKTSVK-N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 440 l~~ll~-----~l~~~L~-~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
-..+++ ....+|+ | +..++...++..+..++.+..... ...+..=+..|+..---.++.+|++|..+|--++
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~-~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR-TILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc-chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 334443 2456776 3 346888999999988876543211 1122222334444445678889999998885554
No 289
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.94 E-value=50 Score=42.58 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCC--C---CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 758 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS--H---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 758 l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~--~---l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
+..|...+..+.+|.+.+-+|+-++++++.+... . +..|. .+-.+ ++|.|++||..|..++..|.
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~---~vM~L-m~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQ---RVMRL-LNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHH---HHHHH-hcCCCHHHHHHHHHHHHHHH
Confidence 3444444445667888888888888888876322 1 12222 23456 89999999999999998763
No 290
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=6.5e+02 Score=36.89 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHhc---CcCHHHHHHHH-HHHHHHH-HHhhh--cc---------------------hhhhhhHHHHHH
Q 000146 360 GDFTEVCRTLKKLIT---DVNIAVAVEAI-QAIGNLA-RGLRT--HF---------------------SGSSRFLLPVLL 411 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~---D~N~~V~~~A~-~~l~~La-~~L~~--~f---------------------~~~~~~llp~LL 411 (2052)
+.|..+++++..... |.|+.+-...+ =.++... +.++. ++ +...-.++..|.
T Consensus 924 sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 924 SCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHH
Confidence 457888888776554 88875554442 2233322 22221 01 233556778888
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHH----HHHHHHhhcCC---hHHHH----------HHHHHHHHH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVV----EDVKTSVKNKV---PLVRS----------LTLNWVTFC 469 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll----~~l~~~L~~Kn---p~vR~----------~~l~~L~~~ 469 (2052)
+.+.|..+.||..|.+++-.++...|..+ +.++ ..++..-.++| |+.+. -++.-+.++
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 89999999999999999988887523222 2222 22222222222 33332 234445555
Q ss_pred HHhcCh-----hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 470 IETSSK-----AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 470 l~~~~~-----~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+..+-+ ..+.+....+...+.+...|.++++.-+|+.|+-++..-
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 544321 223356678888899999999999999999999887643
No 291
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.24 E-value=1.7e+03 Score=30.62 Aligned_cols=97 Identities=20% Similarity=0.352 Sum_probs=62.8
Q ss_pred cHHHHHhhhcCCChhhHHHHHHHH-------HHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhCh
Q 000146 1331 TLPYILEGLRSKNNRTRIECVDLV-------GFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1403 (2052)
Q Consensus 1331 vf~~l~~gl~sKN~r~R~ecl~~l-------~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~ 1403 (2052)
|..|| ..|-+|++-.+ ||++-| -.++.+||..+-+..-.+..|+..+...|++.=.-=...+..+|-=+..
T Consensus 545 v~~Yl-~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~ 622 (667)
T KOG2286|consen 545 VIEYL-RALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPK 622 (667)
T ss_pred HHHHH-HHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcH
Confidence 33443 34444444455 776554 4456777874434455679999999999998666566666666644443
Q ss_pred H----HHHHhhcCCHHHHHHHHHHHHhhhh
Q 000146 1404 D----IWRYVGKLTDAQKSMLDDRFKWKVR 1429 (2052)
Q Consensus 1404 ~----v~~~~g~ls~~~~s~leer~kr~~~ 1429 (2052)
+ |.+.=|+++.+++.-|-++++..-.
T Consensus 623 ~~l~~il~~R~dls~~~~k~i~~~~~~~~~ 652 (667)
T KOG2286|consen 623 DHLEAILKIRGDLSRSEKKKIVDILKESMG 652 (667)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3 4555678999988888888887543
No 292
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=27.16 E-value=1.3e+03 Score=29.37 Aligned_cols=184 Identities=16% Similarity=0.094 Sum_probs=100.3
Q ss_pred cccCChHHHHHHHHHHHH-Hhc--CCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc--chhhhhhHH
Q 000146 333 VKATKWSERKDAVAELTK-LAS--TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLL 407 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~-L~~--~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~--f~~~~~~ll 407 (2052)
..++.-++|.++|+.+.- +++ -|.....+..++...+.++++...+.=...|...++.++--+++. -+-......
T Consensus 69 ~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 69 VKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccc
Confidence 356788999999999875 332 355556778899999999998655555666667778777766632 223344444
Q ss_pred HHHHHHhccCcHH--HHHHHHHHHHHHHHhcCCC---HHHHHHH---HH--HHhhcC--ChHHHHHHHHHHHHHHH----
Q 000146 408 PVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN---LVDVVED---VK--TSVKNK--VPLVRSLTLNWVTFCIE---- 471 (2052)
Q Consensus 408 p~LL~klkdkK~~--V~~aa~~aL~ai~~~~~~~---l~~ll~~---l~--~~L~~K--np~vR~~~l~~L~~~l~---- 471 (2052)
|.+...+-+.... -+..+..|+-..+-..+.- +..++.. .. ..+..+ .+-+-......+..|+.
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 228 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSL 228 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHH
Confidence 5554444444333 3333333333322210100 1111111 11 112211 11111122222222222
Q ss_pred ---hcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 472 ---TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 472 ---~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
-++.+........+.|.+..+|.--.-++|.++.+++..+..+..
T Consensus 229 ~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q 276 (427)
T KOG2842|consen 229 LLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQ 276 (427)
T ss_pred HHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHh
Confidence 222222222234477889999988889999999999998887764
No 293
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=27.08 E-value=1.2e+03 Score=28.31 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh--------hcchhhhhhHHHHHHHHhccCc-----HHHHHHHH
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--------THFSGSSRFLLPVLLEKLKEKK-----PTVAESLT 426 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--------~~f~~~~~~llp~LL~klkdkK-----~~V~~aa~ 426 (2052)
++|..+...+.|.+.-++. ...+++.+..++.--. ..|--.+-..+|-++..+.+.+ +.+++.|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A- 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA- 136 (262)
T ss_pred CCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-
Confidence 4566666666665554443 4455556555554211 1233346678999999998888 4455444
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 427 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 427 ~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
++|..++.. ++.++..++..... ++- + ..-.|+..++.......+.++--.++-.+...|..+-+-+|....
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~---~~f-r---~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAK---GRF-R---DKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHh---cCC-C---CHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 556666654 45566666665533 222 1 223444444433222222333345666788888888899999999
Q ss_pred HHHHHHHHHhC
Q 000146 506 SVLAAIAKSVG 516 (2052)
Q Consensus 506 ~~l~~l~~~~G 516 (2052)
+.+..+...+.
T Consensus 210 ~iL~~ll~~~d 220 (262)
T PF14225_consen 210 QILKVLLPHVD 220 (262)
T ss_pred HHHHHHhcccc
Confidence 99988887765
No 294
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=4e+02 Score=39.27 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChH
Q 000146 420 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 420 ~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
.|..++..++..+.......+..+...++....+.++..|.-++..+..++..-+.. ...++++++|.+.++++|-+.+
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~-~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGEN-VIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred HHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcch-hHHhhhhhhHHHHHHHhhhHHH
Confidence 466666666665543201114455555555555777899999988888888876654 4467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCh
Q 000146 500 VRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 500 VR~aA~~~l~~l~~~~Ge~ 518 (2052)
|-..+++.+-.+-..+||.
T Consensus 1598 Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1598 VECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHHHHHHHHhchh
Confidence 9999999888888889973
No 295
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=25.64 E-value=5.5e+02 Score=36.26 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=47.7
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHhCChhHHHhHh
Q 000146 450 SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIE 525 (2052)
Q Consensus 450 ~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~--~~~Ge~~~~~~l~ 525 (2052)
.|-|.-|..|+.++..|..+-.+ ++ .....+ ..++-.+--..+...+.+|.+|.+.|+.+. +..|-+..-.++.
T Consensus 1820 ~lLHS~PS~R~~vL~vLYAL~S~-~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQPSMRARVLDVLYALSSN-GQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcChHHHHHHHHHHHHHhcC-cH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 34478899999999999875432 21 111111 123333444457788999999999999885 5667665333333
Q ss_pred hccH
Q 000146 526 KLDD 529 (2052)
Q Consensus 526 ~Ld~ 529 (2052)
=|.+
T Consensus 1898 FLP~ 1901 (2235)
T KOG1789|consen 1898 FLPE 1901 (2235)
T ss_pred hchH
Confidence 3333
No 296
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=25.37 E-value=97 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=21.2
Q ss_pred HhhhhhhhCCCChhHHHHHHHHHHHHH
Q 000146 209 LKMLPELFDHQDQNVRASSKGLTLELC 235 (2052)
Q Consensus 209 l~~l~~ll~~~dk~VR~~a~~l~vely 235 (2052)
++.|..++.+.|..||.+|...+..|.
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 677788888888888888887776654
No 297
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.31 E-value=2.5e+02 Score=27.93 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=55.7
Q ss_pred hhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000146 933 GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 933 ~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~ 1000 (2052)
.+++..|...+. ..+..|+...++|+..+...-|..+..--+.++..+-....|....+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 567777877764 45789999999999999999998888777788888888888888888877777765
No 298
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.08 E-value=8.1e+02 Score=33.61 Aligned_cols=135 Identities=14% Similarity=0.213 Sum_probs=78.7
Q ss_pred chhhhhcccCChHHHHHHHHHHHHH---h-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh------
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKL---A-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR------ 396 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L---~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~------ 396 (2052)
+++.+-+-+++.-+|.+.+...... + ....-..+.-.+-+..|..-++|-+. .+||..+--.|-
T Consensus 103 eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~gl~t~~l------~~CleslRVsL~~npVSw 176 (1102)
T KOG1924|consen 103 EEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSGLSTKKL------LECLESLRVSLTSNPVSW 176 (1102)
T ss_pred HhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHcccccccH------HHHHHHHhhhhcCCccHH
Confidence 4566667778888888877765432 1 11111112223345555555777766 455555544443
Q ss_pred -hcchhhhhhHHHHHHHHhccCcHHH------HHHHHHHHHHHHHhcCCCHHHHHH------HHHHHhhcCChHHHHHHH
Q 000146 397 -THFSGSSRFLLPVLLEKLKEKKPTV------AESLTQTLQAMHKAGCLNLVDVVE------DVKTSVKNKVPLVRSLTL 463 (2052)
Q Consensus 397 -~~f~~~~~~llp~LL~klkdkK~~V------~~aa~~aL~ai~~~~~~~l~~ll~------~l~~~L~~Knp~vR~~~l 463 (2052)
+.|.-....++--+|+++.|+|..- ...+..||.+++.+ ..++..++. -+..++.-+.|+++.+++
T Consensus 177 vn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvv 255 (1102)
T KOG1924|consen 177 VNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPREPNMMTDVV 255 (1102)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCccCccHHHHHH
Confidence 3354445557778888888877432 34677888888876 455544432 234466667777777777
Q ss_pred HHHHH
Q 000146 464 NWVTF 468 (2052)
Q Consensus 464 ~~L~~ 468 (2052)
..|..
T Consensus 256 kllsa 260 (1102)
T KOG1924|consen 256 KLLSA 260 (1102)
T ss_pred HHHHH
Confidence 66665
No 299
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.35 E-value=2.9e+02 Score=29.31 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh-----c----CCChHHHHHHHH
Q 000146 439 NLVDVVEDVKTSV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----N----DGTPEVRDAAFS 506 (2052)
Q Consensus 439 ~l~~ll~~l~~~L---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l-----~----Ds~~~VR~aA~~ 506 (2052)
.+..|++.|..-| ++|+|.+..-+|..|..++.+.++..+. .+..-...+..+. + |....||+.|.+
T Consensus 36 ~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~-~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 36 DCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD-ELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH-HHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 3566777777777 6888888888888888888876554332 2222223333222 1 223459999998
Q ss_pred HHHHH
Q 000146 507 VLAAI 511 (2052)
Q Consensus 507 ~l~~l 511 (2052)
.+..+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88654
No 300
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.14 E-value=1.4e+03 Score=28.26 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=37.5
Q ss_pred ccHHHHHhhhcCCChhh--HHHH---------HHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000146 1330 KTLPYILEGLRSKNNRT--RIEC---------VDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1397 (2052)
Q Consensus 1330 kvf~~l~~gl~sKN~r~--R~ec---------l~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~ 1397 (2052)
++|..|.+-++++|+-+ ..+| .=|+..++.+||.. ..|--+++..|+.||--||.++-++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k--------~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK--------EIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH--------HHHHHHhcCCCchhhHHHHHHHHHH
Confidence 46666777777887763 2222 22333334444432 4566788999999999988876544
No 301
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.13 E-value=3.9e+02 Score=28.34 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=62.8
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 898 l~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL---~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
.+..++.+|-.-..-+.+|.... ..+..+..++..|.+|| ...+..++.-||.+|..|.......|-..++
T Consensus 9 ~eAT~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 9 REATSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHTSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34456677876666666554433 22244789999999999 6788999999999999999988877766554
Q ss_pred HHHHHHH--HHh--CC-----CcHHHHHHHHHHHHHH
Q 000146 975 GVLSDIL--KCL--GD-----NKKHMRECTLTVLDAW 1002 (2052)
Q Consensus 975 ~llp~ll--~~l--~D-----~k~~VR~aa~~aL~~i 1002 (2052)
.-...|- ..+ .| ....||..|...++-+
T Consensus 83 ~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 83 DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 3333221 222 12 2235888876666544
No 302
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=23.76 E-value=5.2e+02 Score=29.66 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=72.4
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHh
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL---NLVDVVEDVKTSVK-----NKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~---~l~~ll~~l~~~L~-----~Knp~vR~~~l~~L~~~l~~ 472 (2052)
.++..++..|+....||-..||..|..++..+..+.+. .++ -.+.|...+. +-+|..=.++...+..++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 35678889999999999999999999999999943111 111 1122222221 2234444445444444333
Q ss_pred cChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh--CChhHHHhHhhc
Q 000146 473 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKL 527 (2052)
Q Consensus 473 ~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~--Ge~~~~~~l~~L 527 (2052)
+..+...++.-++--++.-...+...|..+|..++.-. +...+..++..|
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l 132 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDL 132 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 12344556666666677888888888888888777632 333344444443
No 303
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=23.63 E-value=4.5e+02 Score=27.00 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=38.0
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000146 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+.+|.+.++.-+...+..=.+.||..+...|+.+++++|-.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 467889999999999999999999999999999999999844
No 304
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=23.39 E-value=4.4e+02 Score=29.20 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHHHHHHHhCh-hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcc
Q 000146 946 SNKNLVMATLITLGAVASAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 946 sN~~V~~~Al~~l~~la~alg~-~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~ 1024 (2052)
.+...+..-..+|...+...++ -++.|.+.+.-..-+.-++....++... +..++++..- . .....
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~---iq~~~~~a~~------~----~~~~~ 92 (152)
T PF12422_consen 26 LSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEVC---IQDLMEAAIH------L----EYLPL 92 (152)
T ss_pred hhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH---HHHHHHHhHH------h----cchHh
Confidence 5556666666666666644444 3344454444444444344444444443 3333332210 0 11111
Q ss_pred ChhHHHHHHHHHHHHhccCCCC-CchhhhHHH-HHhhcCCCCHHHHHHHHHHHHH
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGF-PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~-~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
.+..|.-+..+-... ....- .-+..+.+| |..+|.-+|+.||..|...+..
T Consensus 93 ~~~~R~~L~~f~~~k--~~~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 93 HSKFREVLLSFHSQK--KRKGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 122333333332222 00000 112456677 7788999999999999877653
No 305
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.17 E-value=1.1e+02 Score=34.75 Aligned_cols=88 Identities=13% Similarity=0.241 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-----ccChhhHHHHHHHHHHHHHH-hCC-CCcChHHHHhhhhhhhCCCC
Q 000146 148 TVEKAQAVFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSE-FGA-KIIPPKRILKMLPELFDHQD 220 (2052)
Q Consensus 148 tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l~-----~K~PKvv~~~l~~L~~~l~~-FG~-~~i~~k~il~~l~~ll~~~d 220 (2052)
.|...+.-+-.|++.+..+.+++.|..... .....+...|+.||..+++. .|. .++.-..++..+...+...+
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~ 171 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN 171 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC
Confidence 333344444455544444444444432221 13345778899998877753 565 34555667888999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 000146 221 QNVRASSKGLTLELC 235 (2052)
Q Consensus 221 k~VR~~a~~l~vely 235 (2052)
..+|..+.+++..++
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987764
No 306
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=3.8e+02 Score=39.54 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=61.2
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhh
Q 000146 767 DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 837 (2052)
Q Consensus 767 ~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 837 (2052)
...+++.|--++..+..++...|-..+ -+..+++++.++ +++.+..|-..+..++..+-...|+.+..|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL-~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAEL-MEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 456789999999999999999998754 356899999999 9999999999999999999999999887663
No 307
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=22.42 E-value=93 Score=32.53 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhHHHHHHhhhchhhhhhccCCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHhhh
Q 000146 1678 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1746 (2052)
Q Consensus 1678 ~eLv~KClwk~~k~l~~~~~~l~~~~iL~~ih~Fl~~~p~~~~r~r~~~~D~plRtvKtil~~l~k~~g 1746 (2052)
..-||+|||+... +. ..+||+-|..- -+...-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 4579999999864 21 23555555431 23466899999999998 44
No 308
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.72 E-value=1.5e+03 Score=27.52 Aligned_cols=178 Identities=15% Similarity=0.181 Sum_probs=98.1
Q ss_pred hhhcc-cCChHHHHHHHHHHHHHhcCCCCCCC--C----hHHHHHHHHHHhcCcC----HHHHHHHHHHHHHHHHHhhhc
Q 000146 330 WEGVK-ATKWSERKDAVAELTKLASTKRIAPG--D----FTEVCRTLKKLITDVN----IAVAVEAIQAIGNLARGLRTH 398 (2052)
Q Consensus 330 ~~~l~-s~kWkeR~eaL~~L~~L~~~~ki~~~--d----y~~l~~~L~k~l~D~N----~~V~~~A~~~l~~La~~L~~~ 398 (2052)
++.+. +.-|..-.+-|..|..+.+.+-+.++ . +...++.+...+.+.+ ..-+...+..|..+|+.-+
T Consensus 70 ~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-- 147 (262)
T PF14225_consen 70 LKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-- 147 (262)
T ss_pred hCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--
Confidence 34443 34465544444444443333223332 1 2233344444555555 1445566677777775332
Q ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 399 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 399 f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
....++.+-.-.-.++++++.-+++.+..--++++- ..--.++--+.+-+.++.+-+|..++..|..++...+-.
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P---~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-- 222 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP---DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-- 222 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--
Confidence 333444444444556666666655444333333321 112456666778888898999999999999999875422
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.++-.+++..+.+.+....- ..|.+.+..++.+-|.
T Consensus 223 ~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 11335567777777765543 3466667666666653
No 309
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.41 E-value=2.2e+02 Score=28.72 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCcChHH-HHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhCh
Q 000146 180 VAKAVVPAIDVMFQALSEFGAKIIPPKR-ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMR 252 (2052)
Q Consensus 180 ~PKvv~~~l~~L~~~l~~FG~~~i~~k~-il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lk 252 (2052)
.|.++..+-..|..+++.||...-.+++ ++..+.+.|-|+++ --..-...+.-|... |++.++..+..+|+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~-~~~t~YGAi~gL~~l-G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK-PLGTHYGAIVGLSAL-GPEAVRALILPNLK 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHH-HHHHHHHhhccCcC
No 310
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=1.3e+03 Score=30.42 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhhcCCChhhHHHHHH
Q 000146 1273 FLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVD 1352 (2052)
Q Consensus 1273 ~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl~sKN~r~R~ecl~ 1352 (2052)
++..+++.|...- +.| --+|-.+|.|+||-.+.|-++..=++-++....|..+.+- ++
T Consensus 211 vv~~VydLL~a~p----eqe-~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~VV-----------------~d 268 (821)
T COG5593 211 VVRLVYDLLEARP----EQE-VNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEVV-----------------LD 268 (821)
T ss_pred HHHHHHHHHhcCh----HHH-HHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHHH-----------------Hh
Confidence 3444555555432 222 3467788999999888888887777877777777765332 22
Q ss_pred HHHHHHHhhCCCcc----cccchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHH---HHHHHHHH
Q 000146 1353 LVGFLIDHHGAEIS----GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK---SMLDDRFK 1425 (2052)
Q Consensus 1353 ~l~~li~~~G~~~~----~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~~g~ls~~~~---s~leer~k 1425 (2052)
. |++|-+... +---+|-.+...+-.+. -.+.-|.|+.+|+.+ +.+|+-++..... ..++|...
T Consensus 269 ~----Iedf~f~pn~~~~s~yyalitLnqt~l~~~---e~~van~lv~vyf~~---f~kfl~n~~ke~~~~s~~leek~~ 338 (821)
T COG5593 269 G----IEDFYFKPNDLFRSRYYALITLNQTELENR---EKAVANKLVKVYFSI---FRKFLENIPKEHRVNSNILEEKLV 338 (821)
T ss_pred h----hhHheeccccccceeeeeehhhHHHHHhhh---HHHHHHHHHHHHHHH---HHHHHhcCchhhcccchhHHHHHH
Confidence 2 344433211 11112333333332111 124457889999876 5678888887775 55555544
Q ss_pred h
Q 000146 1426 W 1426 (2052)
Q Consensus 1426 r 1426 (2052)
.
T Consensus 339 ~ 339 (821)
T COG5593 339 I 339 (821)
T ss_pred h
Confidence 3
No 311
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=20.78 E-value=1.4e+03 Score=29.14 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 439 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~ 439 (2052)
++|..|+++.+.-.+ --+.|.+.|....+ .|...+..-+-+-++.+.|-...||-.|..-|--++.. ..
T Consensus 25 ~~y~~il~~~k~~~k-----~k~lasq~ip~~fk----~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~ 93 (460)
T KOG2213|consen 25 DDYEGILKAVKGTSK-----EKRLASQFIPRFFK----HFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA 93 (460)
T ss_pred HHHHHHHHHhhcchH-----HHHHHHHHHHHHHh----hCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch
Confidence 567777777665333 34456666665543 44455667777788888898888888777777766653 34
Q ss_pred HHHHHHHHHHHhh--------c----CChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCCCh
Q 000146 440 LVDVVEDVKTSVK--------N----KVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTP 498 (2052)
Q Consensus 440 l~~ll~~l~~~L~--------~----Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~ 498 (2052)
+..+.+.+...|+ . ..-++|.-++.||..-+-......+.+-+ ..++..+.+.|.|-..
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtg 165 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTG 165 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccH
Confidence 4444444433332 0 12466666666666554443333332211 2244444444544433
No 312
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=20.49 E-value=4.1e+02 Score=33.43 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred hhhhhhhCCCChhHHHHHHHHHHHHHH
Q 000146 210 KMLPELFDHQDQNVRASSKGLTLELCR 236 (2052)
Q Consensus 210 ~~l~~ll~~~dk~VR~~a~~l~vely~ 236 (2052)
.+.|.||.+.|..||+.+..++.+++=
T Consensus 241 ~WAP~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 241 DWAPGLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred ccchHhhCCCchhHHHHHHHHHHHHhC
Confidence 466789999999999999999998553
No 313
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.44 E-value=2.1e+03 Score=29.26 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=85.3
Q ss_pred CcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCC--cccHHHHHHHHHHHHHHHHHHcCC--
Q 000146 641 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGW--SEKNVQVQQQVIEVINYLAATATK-- 715 (2052)
Q Consensus 641 l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~--~DsN~qV~~~~Le~l~~l~~~~~~-- 715 (2052)
+..=++.+..+..=..|..++..|..+++..+ +.+.... .+.-|| .|.+.+|......++..+..+-+.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP------~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d 349 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVP------DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD 349 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcch------HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch
Confidence 33445778888899999999999998886632 2232222 122354 799999999999999999887432
Q ss_pred CchhhHHHHHHHHHHhh-hch-hhhHHHHHHHHHHHhhhChhH-HHHHHHHHHhh-CC-CHHHHHHHHHHHHHHHHH
Q 000146 716 FPKKCVVLCLLGISERV-ADI-KTRAHAMKCLTTFSEAVGPGF-IFERLYKIMKD-HK-NPKVLSEGILWMVSAVED 787 (2052)
Q Consensus 716 ~~~~~~~~il~~LveKl-gd~-K~r~~a~e~L~~l~E~~~~~~-Vl~~L~~~l~~-~K-npKv~~e~L~~L~~~i~~ 787 (2052)
+.++.+..+-..++|-+ .|. -+|..+.+.|..+.+....+- -+..+...+++ .+ +-+++.+.+..++++..+
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ae 426 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAE 426 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 22355555555566542 332 267777777777766433211 11111111222 12 333677777777776653
No 314
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=20.17 E-value=1.8e+03 Score=27.87 Aligned_cols=203 Identities=14% Similarity=0.151 Sum_probs=119.4
Q ss_pred hhhcccCChHHHHHHHHHHHHHhc---CCCCCC-C----Ch-HHHHHHHHHHhcCcCHHHHHHHH--HHHH--HHHHHhh
Q 000146 330 WEGVKATKWSERKDAVAELTKLAS---TKRIAP-G----DF-TEVCRTLKKLITDVNIAVAVEAI--QAIG--NLARGLR 396 (2052)
Q Consensus 330 ~~~l~s~kWkeR~eaL~~L~~L~~---~~ki~~-~----dy-~~l~~~L~k~l~D~N~~V~~~A~--~~l~--~La~~L~ 396 (2052)
...+..-+|..|+++..-+..+.. +.+..+ . .. .+++..|...-.+..+.+-...+ .|+. .+|+-+-
T Consensus 82 i~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL 161 (335)
T PF08569_consen 82 IRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIIL 161 (335)
T ss_dssp HHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHh
Confidence 334566778999998888777662 122211 1 22 56777777777655553332221 2221 1222111
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTF 468 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~ 468 (2052)
. ..++-.+++......=.|...+..++..++... ..+.+.++..+..-+.+.|.-+|.+++.+|+.
T Consensus 162 ~------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 162 Y------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp T------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred C------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 0 112223555556666677778888887776530 12356777767777889999999999999999
Q ss_pred HHHhcC-hhHHHHhh--hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhc
Q 000146 469 CIETSS-KAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541 (2052)
Q Consensus 469 ~l~~~~-~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~ 541 (2052)
++..-. -..+.+|+ ++-+..++.+|.|..+.+|-.|+-.+-.+..- +++. .++ ..+--.-|.|+-+++..
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~-~~I-~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKP-PPI-VDILIKNREKLLRFLKD 308 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-B-HHH-HHHHHHTHHHHHHHHHT
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCC-hHH-HHHHHHHHHHHHHHHHh
Confidence 986432 23334554 55778899999999999999999888666533 4332 222 22222345667777765
Done!