Query 000146
Match_columns 2052
No_of_seqs 449 out of 1378
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 100.0 2.9E-55 9.8E-60 509.8 29.1 257 1168-1428 2-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 100.0 2E-34 7E-39 339.3 29.3 231 309-541 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 100.0 6.1E-34 2.1E-38 342.0 21.9 235 1-273 1-251 (278)
4 2qk2_A LP04448P; mini spindles 100.0 3.6E-29 1.2E-33 294.1 23.8 230 310-542 2-234 (242)
5 1u6g_C TIP120 protein, CAND1; 100.0 6E-24 2.1E-28 305.7 83.0 831 16-1083 11-963 (1230)
6 1u6g_C TIP120 protein, CAND1; 100.0 2.3E-25 8E-30 320.4 68.4 877 93-1094 135-1145(1230)
7 4fdd_A Transportin-1; heat rep 99.9 5.3E-22 1.8E-26 274.9 72.1 734 101-1104 58-848 (852)
8 2qk1_A Protein STU2; STU2P, XM 99.9 2.8E-25 9.5E-30 261.5 23.7 227 880-1109 4-249 (249)
9 4fdd_A Transportin-1; heat rep 99.9 7E-21 2.4E-25 263.7 65.3 708 137-1085 18-789 (852)
10 2bpt_A Importin beta-1 subunit 99.9 1.7E-20 5.8E-25 259.7 68.4 687 132-1082 95-859 (861)
11 1b3u_A Protein (protein phosph 99.9 9.1E-23 3.1E-27 269.7 43.1 552 328-1078 14-585 (588)
12 2bpt_A Importin beta-1 subunit 99.9 1.5E-20 5.2E-25 260.2 65.1 661 93-1006 136-859 (861)
13 1qgr_A Protein (importin beta 99.9 7.9E-20 2.7E-24 253.5 67.3 722 100-1081 10-872 (876)
14 2qk2_A LP04448P; mini spindles 99.9 2E-23 6.8E-28 245.2 25.3 228 881-1111 4-236 (242)
15 1qgr_A Protein (importin beta 99.9 3.2E-19 1.1E-23 247.5 61.8 672 93-1004 130-871 (876)
16 4ffb_C Protein STU2; tubulin f 99.9 3.6E-23 1.2E-27 248.2 16.7 219 645-867 14-256 (278)
17 2of3_A ZYG-9; multifunctional 99.9 7.7E-22 2.6E-26 229.6 24.8 218 631-855 37-264 (266)
18 1b3u_A Protein (protein phosph 99.9 5.2E-20 1.8E-24 243.2 41.4 556 643-1397 13-585 (588)
19 1ibr_B P95, importin beta-1 su 99.4 1.7E-10 6E-15 147.1 38.8 378 644-1085 5-442 (462)
20 1ibr_B P95, importin beta-1 su 99.4 3.1E-10 1.1E-14 144.8 35.3 338 104-517 50-441 (462)
21 2vgl_B AP-2 complex subunit be 99.2 1.1E-08 3.9E-13 135.4 40.8 176 328-516 17-192 (591)
22 2vgl_B AP-2 complex subunit be 99.1 7.5E-08 2.6E-12 127.5 41.3 387 643-1083 16-422 (591)
23 2iw3_A Elongation factor 3A; a 99.1 3.9E-10 1.3E-14 152.5 19.2 195 329-527 19-218 (986)
24 2x19_B Importin-13; nuclear tr 99.1 4.5E-05 1.5E-09 106.9 66.0 353 651-1092 460-859 (963)
25 2x1g_F Cadmus; transport prote 99.0 7.5E-06 2.6E-10 114.9 56.2 545 337-1081 202-859 (971)
26 2jdq_A Importin alpha-1 subuni 99.0 8.6E-09 2.9E-13 131.1 24.1 377 643-1079 23-442 (450)
27 2jdq_A Importin alpha-1 subuni 99.0 5.3E-08 1.8E-12 123.8 31.3 385 16-512 25-442 (450)
28 1wa5_B Importin alpha subunit; 99.0 3.4E-08 1.2E-12 129.0 30.0 382 16-512 92-509 (530)
29 2x19_B Importin-13; nuclear tr 99.0 0.00047 1.6E-08 96.6 73.2 589 335-1085 36-719 (963)
30 1wa5_B Importin alpha subunit; 99.0 8E-09 2.7E-13 135.0 21.6 377 643-1081 90-511 (530)
31 1w63_A Adapter-related protein 99.0 2.3E-06 8E-11 113.7 43.3 473 424-1078 54-575 (618)
32 2x1g_F Cadmus; transport prote 98.9 0.00015 5E-09 101.8 63.5 570 335-1091 51-732 (971)
33 2z6g_A B-catenin; FULL-length, 98.9 1E-06 3.6E-11 120.2 39.3 500 361-1083 112-666 (780)
34 4b8j_A Importin subunit alpha- 98.9 4.3E-08 1.5E-12 128.0 23.3 379 643-1081 77-497 (528)
35 4b8j_A Importin subunit alpha- 98.9 3.9E-07 1.3E-11 118.9 31.2 386 16-514 79-497 (528)
36 2z6g_A B-catenin; FULL-length, 98.8 5E-06 1.7E-10 113.5 39.4 517 328-1007 119-666 (780)
37 1wa5_C Importin alpha RE-expor 98.8 0.00037 1.3E-08 97.5 58.8 330 652-1007 417-794 (960)
38 1w63_A Adapter-related protein 98.8 1E-05 3.5E-10 107.5 40.9 321 93-512 36-378 (618)
39 2iw3_A Elongation factor 3A; a 98.7 7.6E-07 2.6E-11 120.8 24.3 293 134-517 16-328 (986)
40 2z6h_A Catenin beta-1, beta-ca 98.7 3.3E-05 1.1E-09 103.3 40.1 467 402-1083 11-530 (644)
41 2z6h_A Catenin beta-1, beta-ca 98.6 5.2E-05 1.8E-09 101.4 39.8 486 365-1007 15-530 (644)
42 1wa5_C Importin alpha RE-expor 98.6 0.00071 2.4E-08 94.7 50.4 333 697-1091 376-759 (960)
43 3now_A UNC-45 protein, SD10334 98.5 0.00016 5.6E-09 97.0 41.1 648 145-1005 63-783 (810)
44 3ltm_A Alpha-REP4; protein eng 98.5 1.3E-06 4.5E-11 99.3 18.2 154 895-1083 53-206 (211)
45 3now_A UNC-45 protein, SD10334 98.5 0.00034 1.2E-08 94.0 43.4 607 334-1080 18-737 (810)
46 3ltj_A Alpharep-4; protein eng 98.5 1.9E-06 6.4E-11 97.2 18.8 149 895-1078 48-196 (201)
47 1jdh_A Beta-catenin; beta-cate 98.5 0.00011 3.7E-09 95.4 38.2 480 365-1002 18-528 (529)
48 3tpo_A Importin subunit alpha- 98.5 1.1E-05 3.8E-10 105.2 27.9 375 643-1078 79-495 (529)
49 1jdh_A Beta-catenin; beta-cate 98.5 0.00019 6.7E-09 92.9 39.2 386 403-1000 15-422 (529)
50 3ul1_B Importin subunit alpha- 98.5 8.2E-06 2.8E-10 106.0 25.0 375 643-1078 60-476 (510)
51 3m1i_C Exportin-1; heat repeat 98.5 0.028 9.5E-07 79.4 62.9 318 652-1007 465-836 (1049)
52 3ltm_A Alpha-REP4; protein eng 98.4 3.4E-06 1.2E-10 95.8 18.3 182 894-1110 21-202 (211)
53 3ltj_A Alpharep-4; protein eng 98.4 4.1E-06 1.4E-10 94.4 18.6 181 893-1108 15-195 (201)
54 3ul1_B Importin subunit alpha- 98.4 0.00011 3.6E-09 95.5 33.8 380 327-826 60-477 (510)
55 2vgl_A Adaptor protein complex 98.4 0.00097 3.3E-08 88.4 42.6 241 772-1084 308-554 (621)
56 3tpo_A Importin subunit alpha- 98.4 0.00011 3.8E-09 95.8 32.5 376 328-826 80-496 (529)
57 1oyz_A Hypothetical protein YI 98.4 3.2E-05 1.1E-09 91.9 24.7 93 725-827 25-120 (280)
58 2vgl_A Adaptor protein complex 98.4 0.00027 9.3E-09 93.7 35.7 166 337-516 51-219 (621)
59 3m1i_C Exportin-1; heat repeat 98.3 0.00094 3.2E-08 94.4 42.3 389 96-539 199-645 (1049)
60 1oyz_A Hypothetical protein YI 98.3 3.9E-05 1.3E-09 91.1 22.4 149 901-1078 100-248 (280)
61 4hat_C Exportin-1; heat repeat 98.2 0.0089 3.1E-07 83.3 45.3 197 338-539 430-645 (1023)
62 4db6_A Armadillo repeat protei 98.1 1.5E-05 5.1E-10 90.2 13.8 183 328-512 16-208 (210)
63 3ibv_A Exportin-T; karyopherin 98.1 0.032 1.1E-06 77.6 49.0 297 737-1094 414-781 (980)
64 3ibv_A Exportin-T; karyopherin 98.1 0.0085 2.9E-07 83.4 43.2 618 94-837 196-934 (980)
65 4db8_A Armadillo-repeat protei 98.0 2E-05 6.8E-10 91.9 12.2 183 327-512 15-208 (252)
66 2db0_A 253AA long hypothetical 97.9 0.00056 1.9E-08 73.0 19.5 198 331-540 39-242 (253)
67 4hxt_A De novo protein OR329; 97.9 0.0001 3.5E-09 85.3 14.8 189 328-518 48-246 (252)
68 4hxt_A De novo protein OR329; 97.9 0.00011 3.8E-09 85.0 14.8 184 328-513 6-199 (252)
69 4db6_A Armadillo repeat protei 97.8 6E-05 2E-09 85.2 11.8 183 894-1079 14-208 (210)
70 4db8_A Armadillo-repeat protei 97.8 5.1E-05 1.8E-09 88.3 10.6 183 328-512 58-250 (252)
71 2db0_A 253AA long hypothetical 97.7 0.0014 4.8E-08 70.0 18.6 175 892-1081 32-211 (253)
72 3b2a_A TON_1937, putative unch 97.5 0.0019 6.4E-08 72.3 16.6 180 896-1079 37-217 (265)
73 1xqr_A HSPBP1 protein; armadil 97.4 0.00082 2.8E-08 80.5 13.8 172 339-514 55-239 (296)
74 3b2a_A TON_1937, putative unch 97.3 0.0044 1.5E-07 69.3 16.2 180 328-513 79-261 (265)
75 1xqr_A HSPBP1 protein; armadil 97.0 0.004 1.4E-07 74.5 13.4 168 907-1081 55-239 (296)
76 3l6x_A Catenin delta-1; cateni 96.9 0.52 1.8E-05 61.3 33.6 376 93-524 50-484 (584)
77 1te4_A Conserved protein MTH18 96.8 0.00014 4.7E-09 76.2 -0.8 120 363-510 11-130 (131)
78 4hat_C Exportin-1; heat repeat 96.8 3.6 0.00012 57.4 59.1 141 904-1045 465-622 (1023)
79 3gjx_A Exportin-1; transport, 96.7 3.9 0.00013 57.0 41.3 176 364-539 477-671 (1073)
80 3a6p_A Exportin-5; exportin-5, 96.7 5.2 0.00018 57.0 50.3 381 724-1110 250-736 (1204)
81 3tjz_B Coatomer subunit gamma; 96.6 0.04 1.4E-06 67.2 18.3 283 714-1075 59-348 (355)
82 3opb_A SWI5-dependent HO expre 96.5 0.19 6.6E-06 66.5 24.8 363 643-1080 299-728 (778)
83 3l6x_A Catenin delta-1; cateni 96.5 0.54 1.9E-05 61.1 28.7 373 677-1080 49-476 (584)
84 3oc3_A Helicase MOT1, MOT1; re 96.4 0.012 4.1E-07 72.9 11.9 150 327-512 177-327 (800)
85 3a6p_A Exportin-5; exportin-5, 96.1 10 0.00034 54.1 42.6 185 338-528 61-292 (1204)
86 1xm9_A Plakophilin 1; armadill 96.1 0.36 1.2E-05 61.4 23.7 390 93-512 4-448 (457)
87 4ady_A RPN2, 26S proteasome re 95.8 0.56 1.9E-05 63.5 24.6 256 770-1079 450-718 (963)
88 3tjz_B Coatomer subunit gamma; 95.7 0.11 3.6E-06 63.5 15.7 189 309-513 16-205 (355)
89 3oc3_A Helicase MOT1, MOT1; re 95.7 0.068 2.3E-06 66.5 13.5 184 893-1079 175-403 (800)
90 1te4_A Conserved protein MTH18 95.4 0.013 4.6E-07 60.9 5.6 85 895-1000 45-129 (131)
91 1vsy_5 Proteasome activator BL 95.3 0.4 1.4E-05 66.3 20.9 396 92-517 509-970 (997)
92 3opb_A SWI5-dependent HO expre 95.1 8.5 0.00029 51.2 31.6 288 769-1080 306-635 (778)
93 3nmw_A APC variant protein; AR 94.8 0.24 8.2E-06 60.7 15.0 188 328-516 131-337 (354)
94 4ady_A RPN2, 26S proteasome re 94.6 3.1 0.0001 56.5 25.7 158 335-516 370-538 (963)
95 1mhq_A ADP-ribosylation factor 93.9 0.62 2.1E-05 49.5 13.7 111 901-1020 14-132 (148)
96 3grl_A General vesicular trans 93.7 2.7 9.3E-05 54.5 21.4 310 718-1080 16-394 (651)
97 3nmw_A APC variant protein; AR 93.7 0.42 1.4E-05 58.5 13.7 172 340-512 100-291 (354)
98 3gs3_A Symplekin, LD45768P; he 93.4 7.5 0.00026 45.0 22.9 128 339-472 30-174 (257)
99 3nmz_A APC variant protein; pr 93.3 0.53 1.8E-05 59.6 14.1 172 340-512 216-407 (458)
100 3nmz_A APC variant protein; pr 93.3 0.68 2.3E-05 58.6 15.1 187 328-515 247-452 (458)
101 3ldz_A STAM-1, signal transduc 93.0 0.41 1.4E-05 50.4 10.5 100 901-1009 18-119 (140)
102 1x5b_A Signal transducing adap 92.7 0.75 2.6E-05 49.7 12.3 99 901-1008 28-129 (163)
103 1lrv_A LRV, leucine-rich repea 92.6 0.048 1.6E-06 63.1 3.0 113 899-1075 129-241 (244)
104 1xm9_A Plakophilin 1; armadill 92.5 0.54 1.8E-05 59.7 12.7 180 328-512 6-219 (457)
105 1juq_A ADP-ribosylation factor 92.0 1.1 3.8E-05 48.8 12.6 111 901-1020 26-144 (171)
106 3g2s_A C-terminal fragment of 91.9 0.98 3.3E-05 48.0 11.7 100 901-1009 24-131 (149)
107 4gmo_A Putative uncharacterize 91.1 51 0.0018 43.7 34.7 79 8-124 31-109 (684)
108 3o2t_A Symplekin; heat repeat, 90.3 11 0.00037 46.2 20.2 128 339-472 40-184 (386)
109 1elk_A Target of MYB1; superhe 89.0 2.1 7.3E-05 45.9 11.3 99 901-1008 29-134 (157)
110 3l9t_A Putative uncharacterize 88.7 8.3 0.00028 43.8 16.1 149 932-1093 69-219 (240)
111 3zyq_A Hepatocyte growth facto 88.0 4.6 0.00016 46.0 13.9 98 901-1007 21-121 (226)
112 3l9t_A Putative uncharacterize 87.6 4.4 0.00015 46.0 13.1 123 899-1039 78-205 (240)
113 3gs3_A Symplekin, LD45768P; he 87.3 35 0.0012 39.4 20.9 152 896-1079 19-172 (257)
114 3ldz_A STAM-1, signal transduc 85.9 3.9 0.00013 42.9 10.9 79 439-518 39-119 (140)
115 1x5b_A Signal transducing adap 85.5 5.5 0.00019 42.9 12.1 81 438-518 48-130 (163)
116 3o2t_A Symplekin; heat repeat, 85.4 23 0.00078 43.4 18.8 143 907-1079 40-182 (386)
117 3tt9_A Plakophilin-2; cell adh 84.8 12 0.0004 42.8 15.1 145 366-513 10-180 (233)
118 3u0r_A Apoptosis inhibitor 5; 82.7 8.3 0.00029 48.0 13.2 127 363-498 64-191 (507)
119 1dvp_A HRS, hepatocyte growth 82.6 2.6 9E-05 47.8 8.5 98 901-1007 18-118 (220)
120 3g2s_A C-terminal fragment of 82.5 3.6 0.00012 43.6 8.9 75 165-239 46-129 (149)
121 1mhq_A ADP-ribosylation factor 81.2 13 0.00045 39.3 12.6 96 333-435 14-117 (148)
122 3rru_A TOM1L1 protein; structu 79.1 5 0.00017 42.7 8.5 99 901-1008 29-134 (152)
123 3tt9_A Plakophilin-2; cell adh 77.9 13 0.00045 42.4 12.2 109 403-513 6-124 (233)
124 1lrv_A LRV, leucine-rich repea 76.2 0.8 2.7E-05 52.9 1.5 116 329-509 127-242 (244)
125 1juq_A ADP-ribosylation factor 75.9 25 0.00086 38.0 13.1 96 333-435 26-129 (171)
126 3u0r_A Apoptosis inhibitor 5; 72.1 25 0.00084 43.9 13.0 139 361-518 30-168 (507)
127 1elk_A Target of MYB1; superhe 71.7 36 0.0012 36.2 12.9 79 438-517 49-134 (157)
128 3zyq_A Hepatocyte growth facto 71.4 30 0.001 39.3 12.9 82 437-518 40-123 (226)
129 1vdy_A Hypothetical protein (R 67.1 6.8 0.00023 41.0 5.8 101 899-1004 18-130 (140)
130 4gmo_A Putative uncharacterize 66.3 7.1 0.00024 52.1 7.4 78 442-520 35-112 (684)
131 1vdy_A Hypothetical protein (R 66.0 7 0.00024 40.8 5.6 89 343-435 30-131 (140)
132 1upk_A MO25 protein; transfera 65.9 1.8E+02 0.0062 34.7 18.2 203 330-541 84-308 (341)
133 3grl_A General vesicular trans 64.5 48 0.0017 43.1 14.1 71 442-513 122-195 (651)
134 1vsy_5 Proteasome activator BL 63.5 4.3E+02 0.015 36.4 45.6 441 909-1404 486-971 (997)
135 1dvp_A HRS, hepatocyte growth 60.3 48 0.0016 37.3 11.8 62 333-401 18-79 (220)
136 4atg_A TAF6; transcription, TF 59.7 85 0.0029 34.6 13.1 130 644-782 15-158 (196)
137 4atg_A TAF6; transcription, TF 58.5 1.5E+02 0.0052 32.7 14.8 121 907-1037 23-158 (196)
138 3rru_A TOM1L1 protein; structu 57.9 17 0.0006 38.5 7.0 76 164-239 50-133 (152)
139 3dad_A FH1/FH2 domain-containi 49.9 2.1E+02 0.0072 34.2 15.1 131 410-540 165-315 (339)
140 3gjx_A Exportin-1; transport, 48.0 7.4E+02 0.025 34.4 59.0 85 901-985 575-668 (1073)
141 4flb_A Regulation of nuclear P 46.4 96 0.0033 31.7 10.5 103 403-512 6-111 (132)
142 2jak_A Serine/threonine-protei 45.9 1.1E+02 0.0037 37.5 12.2 173 329-505 179-359 (392)
143 1w9c_A CRM1 protein, exportin 44.5 2.5E+02 0.0085 33.4 14.6 114 383-497 93-228 (321)
144 3fga_B Serine/threonine-protei 44.3 2.5E+02 0.0087 34.4 15.1 173 329-505 134-314 (403)
145 3d9j_A RNA-binding protein 16; 42.5 90 0.0031 32.7 9.5 114 408-522 8-130 (145)
146 1sz9_A PCF11 protein; RNA poly 42.1 1.5E+02 0.005 31.0 11.1 92 416-512 22-113 (144)
147 1w9c_A CRM1 protein, exportin 39.6 2.8E+02 0.0095 33.0 14.0 64 453-516 133-199 (321)
148 1lsh_A Lipovitellin (LV-1N, LV 38.9 2.1E+02 0.007 40.0 15.1 162 905-1084 408-580 (1056)
149 1lsh_A Lipovitellin (LV-1N, LV 38.8 9.8E+02 0.033 33.2 22.9 122 896-1039 444-574 (1056)
150 3dad_A FH1/FH2 domain-containi 38.7 5.7E+02 0.02 30.4 18.0 125 896-1022 164-304 (339)
151 1upk_A MO25 protein; transfera 38.4 2.5E+02 0.0085 33.5 13.2 134 328-470 168-310 (341)
152 2npp_B PP2A, B subunit, serine 38.1 2.1E+02 0.007 35.7 13.2 173 329-505 167-347 (449)
153 1c7c_A Protein (deoxyhemoglobi 27.7 7.1E+02 0.024 28.6 15.2 34 483-516 245-279 (283)
154 1ho8_A Vacuolar ATP synthase s 24.7 1.6E+02 0.0056 36.8 9.0 59 455-514 418-477 (480)
155 1ho8_A Vacuolar ATP synthase s 24.7 2.2E+02 0.0074 35.7 10.1 79 925-1005 387-477 (480)
156 2ion_A PDCD4, programmed cell 24.5 3.3E+02 0.011 28.6 10.3 86 381-472 25-117 (152)
157 2km4_A Regulator of TY1 transp 24.2 1.8E+02 0.0061 30.2 8.1 104 404-512 5-114 (142)
158 2nsz_A Programmed cell death p 22.9 3.6E+02 0.012 27.4 9.9 86 381-472 23-115 (129)
159 3ebb_A Phospholipase A2-activa 22.1 9.9E+02 0.034 27.9 15.6 95 340-434 118-220 (304)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.9e-55 Score=509.77 Aligned_cols=257 Identities=28% Similarity=0.572 Sum_probs=247.5
Q ss_pred hhccccCCCchHHHhh----hhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhh
Q 000146 1168 QALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD 1243 (2052)
Q Consensus 1168 ~~~~~~~~~~k~~R~~----~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~ 1243 (2052)
+|++. .++.|++|.+ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|.+.+++++++
T Consensus 2 ~~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~ 80 (266)
T 2of3_A 2 ELLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRS 80 (266)
T ss_dssp CCSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH
Confidence 34444 3788999974 567899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHh
Q 000146 1244 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1323 (2052)
Q Consensus 1244 ~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~ 1323 (2052)
+++++|++|+|+++||+|+|++|+.++||+|..+|..|.+.+|+|++||+.+|+|+|++|+||+||.||+.++++++.++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000146 1324 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKI 1400 (2052)
Q Consensus 1324 ~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l---~~ia~~i~drd~~VR~AAl~~l~~~y~~ 1400 (2052)
.+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.+
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 67889 9999999999999999999999999999
Q ss_pred hChHHHHHhhcCCHHHHHHHHHHHHhhh
Q 000146 1401 LGEDIWRYVGKLTDAQKSMLDDRFKWKV 1428 (2052)
Q Consensus 1401 ~G~~v~~~~g~ls~~~~s~leer~kr~~ 1428 (2052)
+||+||+++|+|++++++||+|||||++
T Consensus 238 ~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 238 EGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999974
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=339.31 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=220.2
Q ss_pred CCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cCcCHHHHHH
Q 000146 309 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 383 (2052)
Q Consensus 309 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-L~-~~~ki~--~~dy~~l~~~L~k~l-~D~N~~V~~~ 383 (2052)
.|+||+++|+||++||| .+|++++.|+||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47999999999999999 599999999999999999999999 87 688988 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hcch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhhcCC
Q 000146 384 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 455 (2052)
Q Consensus 384 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~------~~l~~ll~~l~~~L~~Kn 455 (2052)
||+||+.||++++ +.|. +|+..++|.|+++++|+|+.|++++..|+++++.+ + .+++.+++.|..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999998 5 339999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHH
Q 000146 456 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 532 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~ 532 (2052)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 6678899 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000146 533 NKLSEMIAG 541 (2052)
Q Consensus 533 kkI~e~~~~ 541 (2052)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-34 Score=341.95 Aligned_cols=235 Identities=26% Similarity=0.413 Sum_probs=181.2
Q ss_pred CChHHHhHhhhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCC--CchhhhhhcccccccccchhhHhhhhccccccc
Q 000146 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMM 78 (2052)
Q Consensus 1 m~~~~~~~~~~~~lpl~~rl~hk~WK~R~~~yeel~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 78 (2052)
|++||+ .||++|||+|||.||+||.|++|||++.++|+..... +++.+..| |
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~-------------~----------- 54 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIY-------------W----------- 54 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCT-------------T-----------
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHH-------------H-----------
Confidence 887554 5999999999999999999999999999999864332 23333333 1
Q ss_pred ccccccchhhhhhchhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhh------hhhhHHHHHHHHHhhcC-CChhHHHH
Q 000146 79 RCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEK 151 (2052)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~------~~~~~~vi~~LieK~L~-~r~~tk~~ 151 (2052)
...++|++++.|+|+.||++|++++..|++.++... ..++..+++.|++|||+ +|+++|+.
T Consensus 55 ------------~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~ 122 (278)
T 4ffb_C 55 ------------RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQ 122 (278)
T ss_dssp ------------SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred ------------HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 127889999999999999999999999998776432 24467889999999998 79999999
Q ss_pred HHHHHHHHHhhhh-hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHH----HHhhhhhhhCCCChhHHHH
Q 000146 152 AQAVFMLWVELEA-VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRAS 226 (2052)
Q Consensus 152 A~~~~l~~~e~~~-~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~----il~~l~~ll~~~dk~VR~~ 226 (2052)
|+++++.+++... .+.+++.|.+++++||||++.+|+.||.+++.+||.+++++++ +++.++++|+|+|++||++
T Consensus 123 a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 123 SMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp HHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence 9999999999865 4778899999999999999999999999999999999988765 6678889999999999999
Q ss_pred HHHHHHHHHHhhCCch--hhHHHHhhChHHHHHHHHHHHHhccCCCCCC
Q 000146 227 SKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELEVELVNVSGTARPT 273 (2052)
Q Consensus 227 a~~l~vely~~lG~~~--l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~ 273 (2052)
|+.+++++|+|+|+.. +...++++|||+|+++|+++|+++.+.++|+
T Consensus 203 A~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 203 TMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPSSS 251 (278)
T ss_dssp HHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999642 2334458999999999999999998765443
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=3.6e-29 Score=294.08 Aligned_cols=230 Identities=29% Similarity=0.469 Sum_probs=217.8
Q ss_pred CCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHH
Q 000146 310 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 387 (2052)
Q Consensus 310 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~ 387 (2052)
||||+++++||+++++ ++|++.+.|++|++|++|++.|..++. ++++...+|.+++..|.+++. |.|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 689999999999999999999999885 478878889999999999995 9999999999999
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 388 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 388 l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 468 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 468 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
+++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++..+|++.+.++++.|++.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999887544 355788999999999999999999999999999999999998899999999999999999999875
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=6e-24 Score=305.74 Aligned_cols=831 Identities=14% Similarity=0.138 Sum_probs=556.1
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchh-hhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchh
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNR-IRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP 94 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2052)
|.+++.+.+.-.|..|-++|.+.++...-.-++. +.. +..
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~---------------------------------------il~ 51 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERK---------------------------------------VVK 51 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHH---------------------------------------HHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHH---------------------------------------HHH
Confidence 6788899999999999999998875311111111 111 144
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh---------
Q 000146 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--------- 164 (2052)
Q Consensus 95 l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--------- 164 (2052)
.+.+++.|.|..++..|+.+|..+++..+. .+...+++.|++- +. ..+.+|..|..++-.+++.-.
T Consensus 52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~-l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 52 MILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHH-TTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 455678899999999999999998876654 4566777877765 55 678899998888887776521
Q ss_pred ---hhhHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhC
Q 000146 165 ---VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 239 (2052)
Q Consensus 165 ---~~~v~e~Ll~~l~-~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG 239 (2052)
...++..|..++. +.++.++.+++.++.+++..+|....+ ...+++.+.+.|.|.+..||..|...+..+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 2456677777887 588999999999999999999985544 56789999999999999999999999999998887
Q ss_pred CchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000146 240 KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319 (2052)
Q Consensus 240 ~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 319 (2052)
+..+ +.+-+..+..|.. . .. .. .|...-.... . .....+ ..+.|| +
T Consensus 208 ~~~~-----~~~l~~l~~~L~~---~-~~--~~---~r~~a~~~l~-~-l~~~~~------------~~~~~~--l---- 253 (1230)
T 1u6g_C 208 NIVF-----VDLIEHLLSELSK---N-DS--MS---TTRTYIQCIA-A-ISRQAG------------HRIGEY--L---- 253 (1230)
T ss_dssp ---C-----TTHHHHHHHHHHH---T-CS--SC---SCTTHHHHHH-H-HHHHSS------------GGGTTS--C----
T ss_pred HHHH-----HHHHHHHHHHhcc---C-Cc--hh---HHHHHHHHHH-H-HHHHhH------------HHHHHH--H----
Confidence 5422 2222222222221 1 10 11 1111110000 0 000000 012221 1
Q ss_pred ccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc------------------------
Q 000146 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT------------------------ 374 (2052)
Q Consensus 320 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~------------------------ 374 (2052)
..+- +.+...+.+.++..|..+++.+..++. .+.-....+..+++.+.+.+.
T Consensus 254 --~~l~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~ 330 (1230)
T 1u6g_C 254 --EKII-PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD 330 (1230)
T ss_dssp --TTHH-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------
T ss_pred --HHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccccccc
Confidence 1122 345566677888899999998888774 222111123455555544442
Q ss_pred -------------CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---
Q 000146 375 -------------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL--- 438 (2052)
Q Consensus 375 -------------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~--- 438 (2052)
|..-.|+..|+.+++.++...+..|.+|...++|.++..++|....||.++..++..++.....
T Consensus 331 ~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 410 (1230)
T 1u6g_C 331 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS 410 (1230)
T ss_dssp --------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--
T ss_pred chhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc
Confidence 2234578999999999999777678999999999999999999999999999999888864110
Q ss_pred --------------------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCCh
Q 000146 439 --------------------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 498 (2052)
Q Consensus 439 --------------------~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~ 498 (2052)
.++.+++.+...+++.+|.+|..++..|..++...+ ..+.++++.++|.+...|.|.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~ 489 (1230)
T 1u6g_C 411 WLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSS 489 (1230)
T ss_dssp ----------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSS
T ss_pred cccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCC
Confidence 123445555556899999999999999999988754 33557889999999999999975
Q ss_pred --HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 499 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 499 --~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
.||..+..+++.+....|...+.++++.+-
T Consensus 490 ~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll------------------------------------------------ 521 (1230)
T 1u6g_C 490 SSNLKIDALSCLYVILCNHSPQVFHPHVQALV------------------------------------------------ 521 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH------------------------------------------------
Confidence 899988888887776666443444333221
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
+.++..+.+.+|+.
T Consensus 522 ------------------------------------------------------------------p~L~~~l~d~~~~v 535 (1230)
T 1u6g_C 522 ------------------------------------------------------------------PPVVACVGDPFYKI 535 (1230)
T ss_dssp ------------------------------------------------------------------HHHHHHHTCSSHHH
T ss_pred ------------------------------------------------------------------HHHHHHHcccchHH
Confidence 23445566778888
Q ss_pred HHHHHHHHHHHHHhccc--------cchHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 657 RLEAISSLRQQVEAVQN--------LDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~--------~~~~~~~Lv~~L~~~pg~--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
|.+++.-+..+++..+. .....+.++..+.. .+ .|.+..|.+.++.++..++...+......+..+++
T Consensus 536 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~--~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~ 613 (1230)
T 1u6g_C 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK--RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 613 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH--HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence 88888888877766432 12333444443321 13 57788899999999999999876544456788889
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHhhh---ChhH----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000146 727 GISERVADIKTRAHAMKCLTTFSEAV---GPGF----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799 (2052)
Q Consensus 727 ~LveKlgd~K~r~~a~e~L~~l~E~~---~~~~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li 799 (2052)
.|.+.+.+..+|..+..++..++... ..+. +++.+...+ ...++.+|..++.++..++..+|. .++...+.
T Consensus 614 ~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~ 691 (1230)
T 1u6g_C 614 IFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMID 691 (1230)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHH
Confidence 88888887767777777787776532 2233 444444443 577899999999999999998875 34444454
Q ss_pred HHH---HhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH-------------HHhcCCCCCCCCC
Q 000146 800 DFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA-------------EYEKNPFEGTVVP 863 (2052)
Q Consensus 800 ~~l---~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~-------------efeK~~~~~~p~p 863 (2052)
+.+ ..+ +.+.|..++..+..++..|++..++.+..++..+-|.+...+.. -|..+...++
T Consensus 692 ~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~--- 767 (1230)
T 1u6g_C 692 AVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT--- 767 (1230)
T ss_dssp HHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC---
Confidence 444 344 67889999999999999999888776655555554544443321 1111100000
Q ss_pred ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC---C--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000146 864 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 938 (2052)
Q Consensus 864 ~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~---d--~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~a 938 (2052)
+. .....+.+.++..+. + ..|..|..+...+..++...+..+ ++++..
T Consensus 768 ---------------------~~-~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-----~~~~~~ 820 (1230)
T 1u6g_C 768 ---------------------NN-LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-----PAVVGQ 820 (1230)
T ss_dssp ---------------------TT-CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-----HHHHTT
T ss_pred ---------------------CC-CCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-----HHHHHH
Confidence 00 001111122222211 1 367888888888888886432211 344444
Q ss_pred HHhhhcc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 000146 939 LRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVT 1016 (2052)
Q Consensus 939 L~~rL~D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~ 1016 (2052)
|...+.+ .+..++..++.+++.++...+ +.. ...+...++..|.|....||.+|..||+.++. .+++.++|.+.
T Consensus 821 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll 896 (1230)
T 1u6g_C 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVL 896 (1230)
T ss_dssp TTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHH
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHH
Confidence 4445543 345667778788888765432 222 24578999999999999999999999999874 35678899999
Q ss_pred HHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1017 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1017 ~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
..+.+. +..|...+.-|.+++...... +....+...++..+.|.+..+|..+.+|++.+....+
T Consensus 897 ~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 897 QEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp HHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 999754 567888888888888754321 1224455557777888888999999999999887754
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.96 E-value=2.3e-25 Score=320.37 Aligned_cols=877 Identities=15% Similarity=0.156 Sum_probs=557.3
Q ss_pred hhHHHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh---hhh
Q 000146 93 GPLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA---VDV 167 (2052)
Q Consensus 93 ~~l~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~---~~~ 167 (2052)
.+.+.+.+. +.+..+++.|++++..+++..+.....|...+++.++.. |. ..+.+|..|+.++..+++... .+.
T Consensus 135 lp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~~~~~ 213 (1230)
T 1u6g_C 135 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNIVFVD 213 (1230)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGG-GGCSSHHHHHHHHHHHHHHTTTC----CTT
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 455556677 488999999999999999887765566777788877765 66 578999999999999887632 245
Q ss_pred HHHHHHHHhhccC-hhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhH
Q 000146 168 FLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT 245 (2052)
Q Consensus 168 v~e~Ll~~l~~K~-PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~ 245 (2052)
+++.|+..+.+.. +.++..++.++..+....|....+ +..+++.+...+.+.+..||+.+..++..+.+..|.+ +.+
T Consensus 214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~ 292 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYP 292 (1230)
T ss_dssp HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHH
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHH
Confidence 6777777776543 567888899999999888763322 5678999999999999999999999999999999864 545
Q ss_pred HHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCc
Q 000146 246 ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 325 (2052)
Q Consensus 246 ~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~ 325 (2052)
++ ..+-|..++ .+... | .+ ....+ . + .++. . +.. ..+++.|.+
T Consensus 293 ~l-~~li~~ll~-------~l~~d--~-~~-~~~~d-----~---~-~~~~-~-~~~-~~~~~~~~~------------- 335 (1230)
T 1u6g_C 293 HV-STIINICLK-------YLTYD--P-NY-NYDDE-----D---E-DENA-M-DAD-GGDDDDQGS------------- 335 (1230)
T ss_dssp HH-HHHHHHHTT-------CCCCC--------------------------------------------------------
T ss_pred hH-HHHHHHHHH-------HhCCC--C-CC-CCccc-----c---c-cccc-c-ccc-ccccchhhc-------------
Confidence 44 333333222 11110 1 00 00000 0 0 0000 0 000 000000000
Q ss_pred cchhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh-------
Q 000146 326 KSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT------- 397 (2052)
Q Consensus 326 ~~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~------- 397 (2052)
.+.|....+..|+.|..|++.|..++.. +.....-|..+++.|...+.|.+..|+..++.++..+...++.
T Consensus 336 -~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 414 (1230)
T 1u6g_C 336 -DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 414 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred -ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccC
Confidence 0122234567899999999999998852 3222223556777888888899999999999999999886643
Q ss_pred ------------cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhcCCh--HH
Q 000146 398 ------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNKVP--LV 458 (2052)
Q Consensus 398 ------------~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l~~ll~~l~~~L~~Knp--~v 458 (2052)
.+..+...++|.++..+++....+|.++..++..++.. + ..++.+++.+...++++++ .+
T Consensus 415 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 415 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred ccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcchH
Confidence 34678888999999999999999999999999999886 2 2367889999999998875 99
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC------hhHHHhHhhccHHHH
Q 000146 459 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKLDDVRR 532 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge------~~~~~~l~~Ld~~k~ 532 (2052)
|.+++.++..++..+++..+.++++.++|.+..++.|.+..||..|..+++.+.+.+|+ ..+.+|++.+-+.-.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 99999999999988877777889999999999999999999999999999999999986 235555555433222
Q ss_pred HHH-------------HHHH----hcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCC
Q 000146 533 NKL-------------SEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595 (2052)
Q Consensus 533 kkI-------------~e~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k 595 (2052)
..+ -..+ ...|... . +. -+...+. ...... .+..
T Consensus 574 ~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~---~--------------~~--~~~~l~~-L~~~l~--~e~~------- 624 (1230)
T 1u6g_C 574 KRLKAADIDQEVKERAISCMGQIICNLGDNL---G--------------SD--LPNTLQI-FLERLK--NEIT------- 624 (1230)
T ss_dssp HHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC---C--------------TH--HHHHHHH-HHHHTT--SSSH-------
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCchh---h--------------hh--HHHHHHH-HHHHhc--cchh-------
Confidence 111 0011 1100000 0 00 0000000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc
Q 000146 596 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 596 ~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.+... ..+.-..+.. +..+ +.. +..++ +.+...+.+.+|..|..+++.+..++...+...
T Consensus 625 ----r~~~~~-al~~i~~~~~--------~~~~--~~~---~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 625 ----RLTTVK-ALTLIAGSPL--------KIDL--RPV---LGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp ----HHHHHH-HHHHHTTCSS--------CCCC--HHH---HHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ----HHHHHH-HHHHHHhCcc--------ccch--HHH---HHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 000000 0000000000 0001 111 11222 466778889999999999999999998854321
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhh--
Q 000146 676 QSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV-- 752 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~-pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~-- 752 (2052)
..+.+..++... |.+.|.+..+...++++|..++...+.........+++.++..+.++.++..+.+++..+....
T Consensus 686 -~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 686 -TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp -CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 234555555433 4567889999999999999988764432223455666777766665554443433333332211
Q ss_pred --C----hhHHHHHHHHHHh---------------------------------------hC----CCHHHHHHHHHHHHH
Q 000146 753 --G----PGFIFERLYKIMK---------------------------------------DH----KNPKVLSEGILWMVS 783 (2052)
Q Consensus 753 --~----~~~Vl~~L~~~l~---------------------------------------~~----KnpKv~~e~L~~L~~ 783 (2052)
. ...+++.++..+. .- .+..++.-++..+.+
T Consensus 765 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 844 (1230)
T 1u6g_C 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 844 (1230)
T ss_dssp TCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 1 1112222211100 00 112222222222222
Q ss_pred HHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 784 AVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 863 (2052)
Q Consensus 784 ~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p 863 (2052)
+-...+.. ...++++.+.++ +.+++..||.+|..+++.++.. .+ ..+-|.+++.|+.+ .+
T Consensus 845 ~g~~~~~~--~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~~---~~----~~~lp~ll~~l~~~-~~--------- 904 (1230)
T 1u6g_C 845 VGHHIDLS--GQLELKSVILEA-FSSPSEEVKSAASYALGSISVG---NL----PEYLPFVLQEITSQ-PK--------- 904 (1230)
T ss_dssp HHHHSCCC--SCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHH---TH----HHHHHHHHHHHHSC-GG---------
T ss_pred hcccCCCc--ccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhcc---CH----HHHHHHHHHHHhcc-ch---------
Confidence 21111111 113567777776 9999999999999999998732 12 22234445444321 00
Q ss_pred ccccccc---cccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000146 864 KKTVRAS---ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940 (2052)
Q Consensus 864 ~r~~r~~---~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~ 940 (2052)
.|...-. .-.. ..+. +.+. .....|.+.|+..+++.+|.+|..+.+.++.++... ..++++.|.
T Consensus 905 ~~~~~l~al~e~i~--~~~~-~~~~--~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~ 971 (1230)
T 1u6g_C 905 RQYLLLHSLKEIIS--SASV-VGLK--PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLK 971 (1230)
T ss_dssp GHHHHHHHHHHHHH--SSCS-TTTH--HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHT
T ss_pred hhHHHHHHHHHHHh--cCCh-hhHH--hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHH
Confidence 0000000 0000 0000 1111 112346667778888889999999999999998631 267889999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Q 000146 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTA 1018 (2052)
Q Consensus 941 ~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~ 1018 (2052)
.++.|++..++..++.+++.+....+..+.+|++.+++.++..+.|.+..||++|..+|+.++++.+ +...++.+.+.
T Consensus 972 ~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~ 1051 (1230)
T 1u6g_C 972 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPH 1051 (1230)
T ss_dssp TTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999999999999999999999999998865 22334444444
Q ss_pred HhcC-cc-------------------ChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1019 LTDA-KL-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1019 L~~~-k~-------------------np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
|... +. +-++|..+++.+...+......-++.+++..+..+|.| +.|+|--+...+..+
T Consensus 1052 l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l 1130 (1230)
T 1u6g_C 1052 LYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRL 1130 (1230)
T ss_dssp HHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc-hHHHHHHHHHHHHHH
Confidence 4311 00 12699999999999998776655678888889999999 589999999999999
Q ss_pred HHHcChhHHHHHhccC
Q 000146 1079 LRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1079 ~~~~G~e~~~~~l~~L 1094 (2052)
+..-+. .+...+..|
T Consensus 1131 ~~~~~~-~~~~~~~~~ 1145 (1230)
T 1u6g_C 1131 STLCPS-AVLQRLDRL 1145 (1230)
T ss_dssp HHSCCH-HHHTTTTTT
T ss_pred HhcCHH-HHHHHHHHH
Confidence 877655 344454444
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.94 E-value=5.3e-22 Score=274.92 Aligned_cols=734 Identities=13% Similarity=0.148 Sum_probs=512.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHh
Q 000146 101 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAI 176 (2052)
Q Consensus 101 ~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~---~~v~e~Ll~~l 176 (2052)
.+.+..+...|.-.|-.++++.-.....-....+...+-++|+ ..+.+|..+.+++..++..+.+ ..+++.|...+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l 137 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL 137 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 5677788888877776666442111111112233333334466 5678999999998888776522 46788888889
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCC------cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKI------IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~------i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.+.++.++.+++.+|..+++.++... -.+..+++.+..+|++.+..||..|...+..+....+. .+...
T Consensus 138 ~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~ 212 (852)
T 4fdd_A 138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLH 212 (852)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHH
Confidence 99999999999999999999887631 12677889999999999999999998877544432210 00000
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhh
Q 000146 251 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 330 (2052)
+. .. + +.+.
T Consensus 213 ~~-~~---l-------------------------------------------------------------------~~l~ 221 (852)
T 4fdd_A 213 ID-SF---I-------------------------------------------------------------------ENLF 221 (852)
T ss_dssp HH-HH---H-------------------------------------------------------------------HHHH
T ss_pred HH-HH---H-------------------------------------------------------------------HHHH
Confidence 00 00 0 1223
Q ss_pred hhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcchhhhhhHH
Q 000146 331 EGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLL 407 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~ll 407 (2052)
..+.+.++..|+.+++.|..++. .++........++..+.+.++|....|+..|+.++..+++. .++.+.+|...++
T Consensus 222 ~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~ 301 (852)
T 4fdd_A 222 ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 301 (852)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33445667789999999988874 44433334568899999999999999999999999998863 4445678999999
Q ss_pred HHHHHHh-----------cc-----------CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 000146 408 PVLLEKL-----------KE-----------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLN 464 (2052)
Q Consensus 408 p~LL~kl-----------kd-----------kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~ 464 (2052)
|.++..+ .| ..-.||.++..+|+.+... +..-++.+++.+...+++.+|.+|..++.
T Consensus 302 p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 302 PVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp HHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999998 34 3456899999999999876 11224567777778888999999999999
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCC
Q 000146 465 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGG 544 (2052)
Q Consensus 465 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~ 544 (2052)
.|..+.+.++. .+.++++.++|.+..+++|.++.||.+|..+++.+...++......
T Consensus 382 alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~---------------------- 438 (852)
T 4fdd_A 382 VLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT---------------------- 438 (852)
T ss_dssp HHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT----------------------
T ss_pred HHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH----------------------
Confidence 99998776543 4557889999999999999999999999999987765443110000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCC
Q 000146 545 DVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVE 624 (2052)
Q Consensus 545 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~ 624 (2052)
T Consensus 439 -------------------------------------------------------------------------------- 438 (852)
T 4fdd_A 439 -------------------------------------------------------------------------------- 438 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000146 625 PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVI 703 (2052)
Q Consensus 625 ~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~L 703 (2052)
..+++ -+.++..|.+.++..|..|...|..+++..+ ........++..|.. .+++.+.+.....+
T Consensus 439 ----~~~~l--------l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~ 504 (852)
T 4fdd_A 439 ----YLKPL--------MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILY 504 (852)
T ss_dssp ----THHHH--------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHH
T ss_pred ----HHHHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHH
Confidence 00111 1345667777888999999988888886633 222333434333321 12222333444566
Q ss_pred HHHHHHHHHcCC-C-chhhHHHHHHHHHHhh---hc--hhhhHHHHHHHHHHHhhhChhHH--HHHHHHHHhhCCCHHHH
Q 000146 704 EVINYLAATATK-F-PKKCVVLCLLGISERV---AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 704 e~l~~l~~~~~~-~-~~~~~~~il~~LveKl---gd--~K~r~~a~e~L~~l~E~~~~~~V--l~~L~~~l~~~KnpKv~ 774 (2052)
+++..++...+. + ...++..++|.++++. .| ..++ .+.+++..++...+..++ +..+++
T Consensus 505 ~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~----------- 572 (852)
T 4fdd_A 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ----------- 572 (852)
T ss_dssp HHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH-----------
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH-----------
Confidence 777777665433 2 2346778888888543 33 2343 677888888887775432 222222
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHH-HhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHh
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 853 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l-~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efe 853 (2052)
.++..+...+... ..... ... .+..+..+|..++.+++.+...+|..+..++.+
T Consensus 573 -~~~~~l~~~l~~~---------~~~~~~~~~-~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~-------------- 627 (852)
T 4fdd_A 573 -RCVNLVQKTLAQA---------MLNNAQPDQ-YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR-------------- 627 (852)
T ss_dssp -HHHHHHHHHHHHH---------HHHHHCTTT-SCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT--------------
T ss_pred -HHHHHHHHHHHHH---------HHhhcCCcc-cCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC--------------
Confidence 2233333322110 00000 012 445677899999999999999999877666511
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh
Q 000146 854 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG 933 (2052)
Q Consensus 854 K~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~ 933 (2052)
..+-+-++..+.++++.+|..+...+..++......+.+. +.
T Consensus 628 -------------------------------------~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~ 669 (852)
T 4fdd_A 628 -------------------------------------SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IA 669 (852)
T ss_dssp -------------------------------------CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HH
T ss_pred -------------------------------------CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HH
Confidence 0123456667788889999999999999997655666665 48
Q ss_pred hHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC----
Q 000146 934 ELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH---- 1007 (2052)
Q Consensus 934 eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~---- 1007 (2052)
++++.|...|.+.+..++..|+.+++.++..+|.++.+|+..+++.++..+.+. ...+++.+..|++.++..++
T Consensus 670 ~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~ 749 (852)
T 4fdd_A 670 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA 749 (852)
T ss_dssp HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC
Confidence 899999999988889999999999999999999999999999999999999875 56899999999999998753
Q ss_pred --chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1008 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1008 --l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
+..+++.+...|.... +.+.|..++..|...+...+.. .++..++. .+....+..++.+..-...|..+-..+|
T Consensus 750 ~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 827 (852)
T 4fdd_A 750 PMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVG 827 (852)
T ss_dssp GGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhChHhHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567777777886432 3567999999998877765542 11121222 3455688899999999999999999999
Q ss_pred hhHHHHHhccCChHHHHHHHH
Q 000146 1084 QETIEKNLKDIQGPALALILE 1104 (2052)
Q Consensus 1084 ~e~~~~~l~~L~~~~~~~I~~ 1104 (2052)
.+....++..|+|..+..+..
T Consensus 828 ~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 828 DENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHHHHHGGGCCHHHHHHHHH
T ss_pred chhHHHHHHhCCHHHHHHHHH
Confidence 988999999999998877664
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-25 Score=261.50 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHH-HHHhccccCC--CCChhhHHHHHHhhh-ccchHHHHHHHH
Q 000146 880 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 955 (2052)
Q Consensus 880 ~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~-ll~~a~~~I~--~~~~~eL~~aL~~rL-~DsN~~V~~~Al 955 (2052)
.+|+++++||.++||++|...+.+++|++|++|++.|.. ++++ .+++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 9875 46777 556899999999999 899999999999
Q ss_pred HHHHHHHHHhC-hhhH-HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCccCh
Q 000146 956 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 956 ~~l~~la~alg-~~~~-~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~------~-l~~ll~~l~~~L~~~k~np 1026 (2052)
++++.|+.+++ +.|. +|...++|.++++++|+++.|++++..||++++.++ + ++.+++.+...|.++ +|
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 69
Q ss_pred hHHHHHHHHHHHHhccCCCC-----Cch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1100 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~ 1100 (2052)
.+|.+++.||.+++...+.. +.+ ..+++.+..+++|++++||++|.+||+.+++++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887642 234 677777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 000146 1101 LILERIKLN 1109 (2052)
Q Consensus 1101 ~I~~~l~k~ 1109 (2052)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.92 E-value=7e-21 Score=263.71 Aligned_cols=708 Identities=10% Similarity=0.083 Sum_probs=492.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhh--hHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC--hH-HHHhh
Q 000146 137 IAAKCLTGRPKTVEKAQAVFMLWVELEAVD--VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PK-RILKM 211 (2052)
Q Consensus 137 LieK~L~~r~~tk~~A~~~~l~~~e~~~~~--~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~--~k-~il~~ 211 (2052)
+++..++....+|..|.+-+..+-. .++ ..+-.++..+.+..+.++..+...|.+.+..+-. .++ .+ .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 4445566677888888887765422 233 2223344444567788999998888877754222 233 12 35566
Q ss_pred hhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhccccc
Q 000146 212 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 291 (2052)
Q Consensus 212 l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~ 291 (2052)
+...+.+.++.||..+..++.+|.++.+++.. .++
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~l---------------------------------------- 129 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDL---------------------------------------- 129 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTH----------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHH----------------------------------------
Confidence 67778888889999888888877766432100 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000146 292 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 365 (2052)
Q Consensus 292 ~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki-----~~~dy~~l 365 (2052)
+ +.+.+.+.+.+|..|..++..|..++. .+.. .......+
T Consensus 130 --------------------------------l--~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 130 --------------------------------L--PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp --------------------------------H--HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred --------------------------------H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 0 133444555667788889988888763 2221 12336788
Q ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHH
Q 000146 366 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 441 (2052)
Q Consensus 366 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~ 441 (2052)
+..|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...++
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88999999999999999999999988776666666778889999999999999999999999999999861 13467
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHhh-----------cC-----------CCh
Q 000146 442 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 498 (2052)
Q Consensus 442 ~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 498 (2052)
.+++.+...++++.+.+|..++.|+..+.+... ...+.+++..++|.+...+ .| ...
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 788888888899999999999999988665321 2234567788999999988 34 344
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhc
Q 000146 499 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 578 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 578 (2052)
.||.+|..+++.+...+|+..+..++
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~------------------------------------------------------ 361 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHIL------------------------------------------------------ 361 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHH------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHH------------------------------------------------------
Confidence 56777777777777666643211110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHH
Q 000146 579 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 658 (2052)
Q Consensus 579 s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 658 (2052)
+-+...+.|.+|+.|.
T Consensus 362 ----------------------------------------------------------------~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 362 ----------------------------------------------------------------PLLKELLFHHEWVVKE 377 (852)
T ss_dssp ----------------------------------------------------------------HHHHHHHTCSSHHHHH
T ss_pred ----------------------------------------------------------------HHHHHHhcCCCHHHHH
Confidence 1233456677899999
Q ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHhhhc--
Q 000146 659 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISERVAD-- 734 (2052)
Q Consensus 659 ~ale~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~-~~~~~~~~il~~LveKlgd-- 734 (2052)
.|+..+..+.+.... .....+.++..+.. .++|.+..|...++.++..+.+..+. ........+++.|+..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999877655321 11233445555432 46899999999999999988875422 2345677899999988876
Q ss_pred hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC---hHhHHHHHH--
Q 000146 735 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 803 (2052)
Q Consensus 735 ~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~---~k~li~~l~-- 803 (2052)
.++|..|..+|..+++..+.. .+++.++..+ +..+.+....++..+..+....|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 578999999999999876643 2444444444 3334444444455555555544542111 233444333
Q ss_pred -hhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCC
Q 000146 804 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 882 (2052)
Q Consensus 804 -~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d 882 (2052)
.. +.+.++.+| .+.+++..+...+|..+.+|+..+-+.++..|...+.+-.. .... .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~-----------~~~~--------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML-----------NNAQ--------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHC--------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhcC--------Cc
Confidence 33 667788887 78999999999999999999988877777777665432100 0000 00
Q ss_pred CCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHH
Q 000146 883 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 961 (2052)
Q Consensus 883 ~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~l 961 (2052)
..+..+-..|..+++.+..++...+..+.+.. -..++..+...+.|.+..|+..|+.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577888888888875434443321 046889999999999999999999999999
Q ss_pred HHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHH
Q 000146 962 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 962 a~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~ 1035 (2052)
+..+|..|.+|+..++|.+++.+.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999899999999999999998885 3456667777777654345677777777
Q ss_pred HHHHhccCCC--CCchhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHcChh
Q 000146 1036 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1036 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
+.+.....+. .+.+..++.+++..|.+ .+.+.|..|..+|-.++..-+..
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh
Confidence 7766555433 35677888888888855 56678999999999999886653
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=1.7e-20 Score=259.70 Aligned_cols=687 Identities=13% Similarity=0.095 Sum_probs=472.8
Q ss_pred HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHhCCCC--c
Q 000146 132 EVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGAKI--I 203 (2052)
Q Consensus 132 ~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~----~~v~e~Ll~~l~~K-~PKvv~~~l~~L~~~l~~FG~~~--i 203 (2052)
.+-..|++- |. ..+.+|..+.+++..++..+-+ ..+++.|...+.+. +|.++..++.++..+.+.++... +
T Consensus 95 ~ik~~ll~~-l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 173 (861)
T 2bpt_A 95 QIKTNALTA-LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHHHHH-HCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHH
Confidence 344455554 55 5678888888887776655422 36778888888777 99999999999999999888642 1
Q ss_pred --ChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhh
Q 000146 204 --PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 279 (2052)
Q Consensus 204 --~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~ 279 (2052)
....+++.+...+.|. +..||..|..++..+..|++. .+ .. ......+
T Consensus 174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~~l-------------------- 225 (861)
T 2bpt_A 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERNYL-------------------- 225 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHHHH--------------------
Confidence 2456888888888888 889999999988887766532 11 10 0000000
Q ss_pred hhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCC
Q 000146 280 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIA 358 (2052)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~ 358 (2052)
+ ..+.+.+.+.+|+.|..+++.|..++. .+...
T Consensus 226 -----------------------------------------l-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 226 -----------------------------------------M-----QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp -----------------------------------------H-----HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred -----------------------------------------H-----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012223456679999999999988873 33322
Q ss_pred CCChH-HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh----------------hc-chhhhhhHHHHHHHHhcc----
Q 000146 359 PGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLKE---- 416 (2052)
Q Consensus 359 ~~dy~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~----------------~~-f~~~~~~llp~LL~klkd---- 416 (2052)
...+. .++..+...+.|.+..|+..|+.++..++.... +. +.++...++|.|+..+.+
T Consensus 260 ~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d 339 (861)
T 2bpt_A 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339 (861)
T ss_dssp HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22334 677778888889999999999999999987642 11 246778999999999974
Q ss_pred ---CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 417 ---KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 417 ---kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
....+|.++..+|..++.. +..-++.+++.+...+++.+|.+|..++..+..+.....+..+.++++.++|.+...
T Consensus 340 ~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~ 419 (861)
T 2bpt_A 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419 (861)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHG
T ss_pred cccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999875 212356777888888899999999999999999886655456678889999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCChhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcch
Q 000146 493 LNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571 (2052)
Q Consensus 493 l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~-~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 571 (2052)
+.|.++.||.++..+++.+...++.... .++
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------------ 451 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------------ 451 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT------------------------------------------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH------------------------------------------------
Confidence 9999999999999998888776653100 000
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000146 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 651 (2052)
Q Consensus 572 ~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 651 (2052)
.+++- +.++..|.+
T Consensus 452 ----------------------------------------------------------~~~~l--------~~l~~~l~~ 465 (861)
T 2bpt_A 452 ----------------------------------------------------------LPGVV--------QACLIGLQD 465 (861)
T ss_dssp ----------------------------------------------------------HHHHH--------HHHHHHHTS
T ss_pred ----------------------------------------------------------HHHHH--------HHHHHHhcc
Confidence 01110 233444555
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 652 AVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~-----~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
. +..|..+...+..+++..+ ......+.++..|...-.-.|.+..|...+++++..++...+.-....+..++|
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 4 7777777777777766532 112233333332221000125556788889999999988865433445566666
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhh
Q 000146 727 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDT 805 (2052)
Q Consensus 727 ~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~ 805 (2052)
.+++.+.+...-+ ...... -.....+.++..++..|..++..+|....+ +..+++.+...
T Consensus 545 ~l~~~l~~~~~~~---------~~i~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 605 (861)
T 2bpt_A 545 FVMDKLGQTMSVD---------ENQLTL----------EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL 605 (861)
T ss_dssp HHHHHHHHHTTSC---------GGGCCH----------HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh---------cccCCh----------hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6665544320000 000000 000123445677788888888877763222 45667766666
Q ss_pred CCCCCcH-HHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCC
Q 000146 806 GLQSSAA-ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 806 gL~~~n~-~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
+.+.+. .||..+..+++.+....|..+..|+..+-|.+.+.
T Consensus 606 -l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~------------------------------------- 647 (861)
T 2bpt_A 606 -LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA------------------------------------- 647 (861)
T ss_dssp -HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-------------------------------------
T ss_pred -HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------------------------------------
Confidence 777766 89999999999999999988877775544443333
Q ss_pred CcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccch--HHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVA 962 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN--~~V~~~Al~~l~~la 962 (2052)
+.+++|.+|..++..+..++...+..+.+. ..++++.|...+.|.+ ..++..++.+++.++
T Consensus 648 ----------------l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 648 ----------------LNQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp ----------------HHCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred ----------------hccccHHHHHHHHHHHHHHHHHhchhccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 334456788899999998887544433333 3778888888888776 889999999999999
Q ss_pred HHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHH----hcC
Q 000146 963 SAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVPYVTTAL----TDA 1022 (2052)
Q Consensus 963 ~alg~~~~~~~~~llp~ll~~l~D~k-----------~~VR~aa~~aL~~i~~~~~-----l~~ll~~l~~~L----~~~ 1022 (2052)
..+|..|.+|+..++|.++..+..+. ..+|.++.+++..++..++ +..+++.+...| .+.
T Consensus 711 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~ 790 (861)
T 2bpt_A 711 SNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDP 790 (861)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999987432 4689999999999998887 444445444443 331
Q ss_pred c--cChhHHHHHHHHHHHHhccC-CCC--Cchh-hhHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHc
Q 000146 1023 K--LGAEGRKDLFDWLSKQLTGL-SGF--PDAA-HLLKPASIAMT---DKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1023 k--~np~~R~~~l~~L~~~l~~~-~~~--~~~~-~ll~pl~~~L~---D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
. .+..+|..++.++......+ +.. +.+. .+++.+++++. +++..|+..|.-++..+.+.+
T Consensus 791 ~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 791 QLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 0 04679999999998877766 332 2344 56777888764 677899999998888776543
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=9.1e-23 Score=269.69 Aligned_cols=552 Identities=18% Similarity=0.195 Sum_probs=377.1
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 577789999999999999999887631 111 12356777787766 778889999999998877766542 477888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~----~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+|.|...+.+....||+++..+|..++.. .+.. .+++.+....++.++.+|..++.++..+....+.. ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VK 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HH
Confidence 99988888889999999999999999875 3322 34555555557788999999999999887765533 34
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCC
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 562 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 562 (2052)
+.++|.+..++.|.++.||.+|.++++.+...+|.+.. ...+-+ .+...+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC--------------------
Confidence 78899999999999999999999999999998885321 111111 111111100
Q ss_pred CCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000146 563 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 642 (2052)
Q Consensus 563 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 642 (2052)
...++..+....+ ... ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~--------------------------------~l~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACV--------------------------------NIA--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHH--------------------------------HHH--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHH--------------------------------HHH--------HhCCHHHH----HHHHH
Confidence 0001000000000 000 00011111 11122
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
+-+...+.+.+|..|..+++.|..+....+. .....
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~~ 280 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP--------------------------------------------EITKT 280 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--------------------------------------------HHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--------------------------------------------ccchh
Confidence 3444555556666666666555544332211 00112
Q ss_pred HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChh----H----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC
Q 000146 723 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----F----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 792 (2052)
Q Consensus 723 ~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~----~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~ 792 (2052)
.+++.++.-+.| ..+|..+..+|..+++..+.+ . +++.+... .++++|+||..++.+|..+...+|...
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH
Confidence 234444444444 246666777777777766543 2 33333333 368899999999999888888777532
Q ss_pred CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 000146 793 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 872 (2052)
Q Consensus 793 l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~ 872 (2052)
....+++.+..+ +.+.++.||.++...++.+...+|... +
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~------------------------------------ 399 (588)
T 1b3u_A 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--L------------------------------------ 399 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--H------------------------------------
T ss_pred -HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--H------------------------------------
Confidence 134566777776 889999999999998888877666421 0
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHH
Q 000146 873 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952 (2052)
Q Consensus 873 ~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~ 952 (2052)
...+.+.+...+.|.+|++|..+++.+..+....+.... ...+++.|...|.|.+..|+.
T Consensus 400 -----------------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 400 -----------------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp -----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHH
T ss_pred -----------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHH
Confidence 001234455567888999999999999998874322211 257889999999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCccChhH
Q 000146 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEG 1028 (2052)
Q Consensus 953 ~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll~~l~~~L~~~k~np~~ 1028 (2052)
.|+.+++.++..+|..+ +...++|.++..+.|.+..+|.++..++..++..+|.+ .++|.+...+.++ ++.+
T Consensus 460 ~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~V 535 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchH
Confidence 99999999999999864 46788999999999999999999999999999988753 5667777777765 5899
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
|..++..+.......+.. .....+.| +...++|.+++||..|..++..+
T Consensus 536 r~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999999999877655321 12234444 55667999999999999998754
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=1.5e-20 Score=260.16 Aligned_cols=661 Identities=13% Similarity=0.136 Sum_probs=453.3
Q ss_pred hhHHHHHhccC-cHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhh-h-
Q 000146 93 GPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-E- 163 (2052)
Q Consensus 93 ~~l~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~---~~~~~~~vi~~LieK~L~-~--r~~tk~~A~~~~l~~~e~-~- 163 (2052)
.+.+.+.+.+. |..+.+.++.++..+++..+.. ...+...+++.++. ++. . .+.+|..|++++..+++. +
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~-~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ-GAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHH-HHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777 9999999999999998876543 24566667776654 465 3 678999999999887553 1
Q ss_pred h------hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hH-HHHhhhhhhhCCCChhHHHHHHHHHHHHH
Q 000146 164 A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELC 235 (2052)
Q Consensus 164 ~------~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k-~il~~l~~ll~~~dk~VR~~a~~l~vely 235 (2052)
. ...+++.|...+.+..++++..++.+|..++..++....+ +. .+++.+...+.+.+..||..|.+++..+.
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1 1346677777788889999999999999999998864322 34 67777778889999999999999988887
Q ss_pred HhhCCchhhHHHHh----------hChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCC
Q 000146 236 RWIGKDPVKTILFE----------KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 305 (2052)
Q Consensus 236 ~~lG~~~l~~~L~~----------~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (2052)
+.... +...-.+ -+++....-+...+..+ . .. .
T Consensus 295 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l-----------------------~----~~-----~--- 337 (861)
T 2bpt_A 295 EEEID--IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL-----------------------T----RQ-----N--- 337 (861)
T ss_dssp HHHHH--HHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT-----------------------T----CC-----C---
T ss_pred HHHHh--hhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH-----------------------H----hc-----c---
Confidence 66421 0000000 00000000000001100 0 00 0
Q ss_pred CCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHH
Q 000146 306 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 385 (2052)
Q Consensus 306 ~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~ 385 (2052)
+ | ..+.+|..|+.+...|..++..- ....+..+++.+...+.|.+..++..|+
T Consensus 338 -~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~ 390 (861)
T 2bpt_A 338 -E--D----------------------PEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp -C--C-----------------------CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -c--c----------------------cccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHH
Confidence 0 0 01235899999999998877421 1223578888999999999999999999
Q ss_pred HHHHHHHHHhh-hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHhhcCChHH
Q 000146 386 QAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLV 458 (2052)
Q Consensus 386 ~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~------~~~l~~ll~~l~~~L~~Knp~v 458 (2052)
.+++.++.+.+ ..+.+|...++|.|+..++|.++.||.++..++..++... ...+..+++.+..++++. +.+
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v 469 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKV 469 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHH
Confidence 99999998876 6678999999999999999999999999999999888751 134788999999999876 999
Q ss_pred HHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 459 RSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
|..++..|..+++... +..+.++++.+++.+.+++. |.++.||.++.++++.+....|+. +.+++..+-+.-.+
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHH
Confidence 9999999999888754 34566888999999999998 555899999999999999999965 56666665444444
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 613 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~ 613 (2052)
.+...+.-.
T Consensus 549 ~l~~~~~~~----------------------------------------------------------------------- 557 (861)
T 2bpt_A 549 KLGQTMSVD----------------------------------------------------------------------- 557 (861)
T ss_dssp HHHHHTTSC-----------------------------------------------------------------------
T ss_pred HHHHHHhhh-----------------------------------------------------------------------
Confidence 443321000
Q ss_pred CcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc
Q 000146 614 SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 693 (2052)
Q Consensus 614 s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D 693 (2052)
....+.++-+ .....|..+++.|..++...+.
T Consensus 558 -----------~~i~~~~~~~-----------------~~~~~~~~~~~~l~~l~~~~~~-------------------- 589 (861)
T 2bpt_A 558 -----------ENQLTLEDAQ-----------------SLQELQSNILTVLAAVIRKSPS-------------------- 589 (861)
T ss_dssp -----------GGGCCHHHHH-----------------HHHHHHHHHHHHHHHHHHHCGG--------------------
T ss_pred -----------cccCChhhHH-----------------HHHHHHHHHHHHHHHHHHHhhh--------------------
Confidence 0000101000 0011233344444433333211
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--h-hhhHHHHHHHHHHHhhhChhH------HHHHHHHH
Q 000146 694 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHAMKCLTTFSEAVGPGF------IFERLYKI 764 (2052)
Q Consensus 694 sN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~-K~r~~a~e~L~~l~E~~~~~~------Vl~~L~~~ 764 (2052)
.....+..+++.++.-+.+ . .++..+..++..+++..+.++ +++.++..
T Consensus 590 ----------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 590 ----------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA 647 (861)
T ss_dssp ----------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0111222333333333322 2 456667777777777665433 34445555
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCc--HHHHHHHHHHHHHHHHhhChhhHhhhhhcc
Q 000146 765 MKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVK 841 (2052)
Q Consensus 765 l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 841 (2052)
+ +++++.++..++..+..++..+|.... .+..+++.+... +.+.+ +.||..+..+++.+....|+.+..|+..+-
T Consensus 648 l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l 725 (861)
T 2bpt_A 648 L-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725 (861)
T ss_dssp H-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred h-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4 678999999999999999988875211 134566666665 77665 899999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000146 842 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILE 921 (2052)
Q Consensus 842 P~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~ 921 (2052)
|.+.+.++. .. + + .| ++.. +-.+.+|..+++.+..++.
T Consensus 726 ~~l~~~~~~----~~--~---~-----------------~d------------~d~~----~~~~~vr~~~l~~~~~i~~ 763 (861)
T 2bpt_A 726 ALCVAAQNT----KP--E---N-----------------GT------------LEAL----DYQIKVLEAVLDAYVGIVA 763 (861)
T ss_dssp HHHHHHHTC----CC--S---S-----------------SS------------HHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CC--C---C-----------------CC------------hHHH----HHHHHHHHHHHHHHHHHHH
Confidence 777665421 00 0 0 00 0100 1135789999999999997
Q ss_pred hcc---ccCCCCChhhHHHHHHhhhccc----hHHHHHHHHHHHHHHHHHh-ChhhHHhhh-HHHHHHHHHhC---CCcH
Q 000146 922 EAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAVEKSSK-GVLSDILKCLG---DNKK 989 (2052)
Q Consensus 922 ~a~---~~I~~~~~~eL~~aL~~rL~Ds----N~~V~~~Al~~l~~la~al-g~~~~~~~~-~llp~ll~~l~---D~k~ 989 (2052)
..+ ..+.+. ..+++..|...+.|. +..|+..|+.+++.++..+ |+.|.+|.. .++|.+++.+. +...
T Consensus 764 ~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~ 842 (861)
T 2bpt_A 764 GLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQ 842 (861)
T ss_dssp HTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCH
T ss_pred HHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCH
Confidence 532 123333 377888888888885 8899999999999999999 999999999 99999999887 4666
Q ss_pred HHHHHHHHHHHHHHHhc
Q 000146 990 HMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 990 ~VR~aa~~aL~~i~~~~ 1006 (2052)
.+++.|.=+++.+...+
T Consensus 843 ~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 843 ATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888888887776543
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.91 E-value=7.9e-20 Score=253.53 Aligned_cols=722 Identities=12% Similarity=0.080 Sum_probs=483.8
Q ss_pred hccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000146 100 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 161 (2052)
Q Consensus 100 v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~--~r~~tk~~A~~~~l~~~----------------e 161 (2052)
..+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ .
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34677778888888887654321 12333334433222 25778887776655443 2
Q ss_pred hh--hhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHh
Q 000146 162 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 237 (2052)
Q Consensus 162 ~~--~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~ 237 (2052)
+. .-..+-+.|+.++.+-.+++ ..+..++..+....+.. -....+++.+...+.+. +..+|..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12345566788888888888 88889999888876541 12457889999999998 999999999999999887
Q ss_pred hCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 238 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 317 (2052)
Q Consensus 238 lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 317 (2052)
++++.+ ...-+..+..
T Consensus 161 ~~~~~~-----~~~~~~ll~~----------------------------------------------------------- 176 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILTA----------------------------------------------------------- 176 (876)
T ss_dssp SCHHHH-----GGGHHHHHHH-----------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHHH-----------------------------------------------------------
Confidence 752211 1111111111
Q ss_pred ccccCcCccchhhhhcccC--ChHHHHHHHHHHHHHhcC-C-CCCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Q 000146 318 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST-K-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 392 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~L~~~-~-ki~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 392 (2052)
+...+.+. +|..|..|++.|..++.. + .+....+ ..+++.+...+.|.+..|+..|+.|++.++
T Consensus 177 -----------l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 177 -----------IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp -----------HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -----------HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 11112222 466788888888776531 0 0111011 236777777788888999999999999999
Q ss_pred HHhhhcchhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----HHHHHHH
Q 000146 393 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 446 (2052)
Q Consensus 393 ~~L~~~f~~~~~-~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------------------~~~-----l~~ll~~ 446 (2052)
....+.|.+|.. .+++.++..+++....|+..+.+.+..++... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 988888999999 99999999999999999999988888887641 011 2445555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000146 447 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 519 (2052)
Q Consensus 447 l~~~L~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~ 519 (2052)
++..+. +.+|.+|..+...|..+....+. ..++.++|.+...+.|.++.+|.+|..+++.+....+...
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 34677777777777776655442 2245677777777777777788777777765543222111
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000146 520 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 599 (2052)
Q Consensus 520 ~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~ 599 (2052)
+.++
T Consensus 402 ~~~~---------------------------------------------------------------------------- 405 (876)
T 1qgr_A 402 LKPL---------------------------------------------------------------------------- 405 (876)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccc---cch
Q 000146 600 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 676 (2052)
Q Consensus 600 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~---~~~ 676 (2052)
+..++ +.++..|.+.+|..|..|+..+..+...... ...
T Consensus 406 -------------------------------------~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 406 -------------------------------------VIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp -------------------------------------HHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred -------------------------------------HHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 11111 3456667788899999999998888876432 122
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHHhhhch-----hh
Q 000146 677 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 737 (2052)
Q Consensus 677 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgd~-----K~ 737 (2052)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..++|.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444444322 24554 7788888889988887643 123456788999998877653 57
Q ss_pred hHHHHHHHHHHHhhhChh------HHHHHHHHHHhh----------CCC----HHHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000146 738 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 795 (2052)
Q Consensus 738 r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~----------~Kn----pKv~~e~L~~L~~~i~~fG-~~~l-~~ 795 (2052)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999987643 223333333221 111 5667778888888887766 2211 23
Q ss_pred HhHHHHHHhhCCCCCc--HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000146 796 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 873 (2052)
Q Consensus 796 k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~ 873 (2052)
..+++.+... +.+.+ +.||..+..+++.+....|..+..|+..+-|.+
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l----------------------------- 654 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL----------------------------- 654 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------
Confidence 5677777776 77765 489999999999999888887776664433333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc--chHHH
Q 000146 874 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 950 (2052)
Q Consensus 874 ~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D--sN~~V 950 (2052)
+..+.+. +|.+|..++..+..++......+.+. ..+++..|...|.+ .+..+
T Consensus 655 ------------------------~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 655 ------------------------GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp ------------------------HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred ------------------------HHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 3333333 67889999999999987544445543 47888888888876 46789
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000146 951 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 1007 (2052)
Q Consensus 951 ~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k-----------~~VR~aa~~aL~~i~~~~~------------ 1007 (2052)
+..++.+++.++..+|..|.+|+..++|.+++.+.++. ..+|..+..++..++...+
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999987653 3799999999998887653
Q ss_pred chhhHHHHHHHH----hcCccChhHHHHHHHHHHHHhccCCC-C--Cc-hhhhHHHHHh-hcCCCCHHHHHHHHHHHHHH
Q 000146 1008 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1008 l~~ll~~l~~~L----~~~k~np~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVRkaA~~~L~~l 1078 (2052)
+..+++.+...+ .++..+..+|..++..|...+..++. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 233455555555 33311467898888888877666543 1 11 2356778888 99999999999999999887
Q ss_pred HHH
Q 000146 1079 LRA 1081 (2052)
Q Consensus 1079 ~~~ 1081 (2052)
.+.
T Consensus 870 ~~~ 872 (876)
T 1qgr_A 870 RKL 872 (876)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=2e-23 Score=245.17 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=210.6
Q ss_pred CCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHH
Q 000146 881 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 959 (2052)
Q Consensus 881 ~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~ 959 (2052)
+|+++++||.++|++.+++.+.|++|++|++|+..|..++..+ ..+....|.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999864 34555567999999999995 999999999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.|+..+|+.|.+|+..++|.++.+++|+++.||+++..+|.+++..++++.++|.+...|.++ ++.+|.+++.||..+
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 799999999999998
Q ss_pred hccCCCC----CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000146 1040 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1111 (2052)
Q Consensus 1040 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~ 1111 (2052)
+..+... ..+..+++.+..+|+|++++||++|..|++.++.++|++.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876421 34566777799999999999999999999999999999999999999999999999999998764
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.90 E-value=3.2e-19 Score=247.47 Aligned_cols=672 Identities=14% Similarity=0.125 Sum_probs=444.4
Q ss_pred hhHHHHHhccC--cHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhh-hh-
Q 000146 93 GPLFKKTVADS--NAPVQDKALDALIAYLKAAD-ADAGRYAKEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-EA- 164 (2052)
Q Consensus 93 ~~l~~k~v~Ds--N~~aqe~gl~al~~~l~~~~-~~~~~~~~~vi~~LieK~L~-~--r~~tk~~A~~~~l~~~e~-~~- 164 (2052)
.+.+.+.+.+. +..+++.++.+|..+++..+ ..+..+...+++.++. ++. . ...+|..|++++..+++. +.
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ-GMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH-HHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888 99999999999999998753 2344566667766554 465 3 478999999999887754 21
Q ss_pred h------hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hH-HHHhhhhhhhCCCChhHHHHHHHHHHHHHH
Q 000146 165 V------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELCR 236 (2052)
Q Consensus 165 ~------~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k-~il~~l~~ll~~~dk~VR~~a~~l~vely~ 236 (2052)
. +.+++.+...+.+..++++..++.+|..++..++....+ +. .+++.+...+.+.+..||..|.+++..+.+
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 1 236666677777788999999999999999988764322 33 677888888899999999999998877765
Q ss_pred hhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCC-ccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 237 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPT-RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 315 (2052)
Q Consensus 237 ~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~-R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~ 315 (2052)
... .+ . . +-+...+.-..+..+. .+.+..-. .. +
T Consensus 289 ~~~------~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l------------------------------l 323 (876)
T 1qgr_A 289 EEM------DL-A------I-EASEAAEQGRPPEHTSKFYAKGALQ-YL------------------------------V 323 (876)
T ss_dssp HHH------HH-H------H-HHHHHHHHSSCCSSCCCCHHHHHHH-HH------------------------------H
T ss_pred HHH------hH-h------h-hhccccccCCCccchhHHHHHHHHH-HH------------------------------h
Confidence 431 00 0 0 0011111100000010 01110000 00 0
Q ss_pred CcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Q 000146 316 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 394 (2052)
Q Consensus 316 ~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~ 394 (2052)
+ .++..+. ...+...+.+|..|+.|...|..++.. + ..-+..+++.+...+.|.+..++..|+.+++.++.+
T Consensus 324 ~--~ll~~l~--~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 324 P--ILTQTLT--KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp H--HHHHHTT--CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred H--HHHHHhh--cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 0 0000000 000001245799999999999887742 2 123668888888999999999999999999999998
Q ss_pred hh-hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 395 LR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 395 L~-~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
.. ..+.+|...++|.++..++|.++.||.++..++..++... ...+..+++.+...+.+. +.+|..++..|.
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 87 4578899999999999999999999999999999999861 135788899999999874 999999999999
Q ss_pred HHHHhcC-------------hhHHHHhhhhHHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHH
Q 000146 468 FCIETSS-------------KAAVLKVHKDYVPICMECLNDG---TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 531 (2052)
Q Consensus 468 ~~l~~~~-------------~~~l~~~l~~l~p~l~k~l~Ds---~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k 531 (2052)
.++.... ...+.++++.++|.+..++.+. +..+|..+.++++.+...+|.. +.+++..+-+.-
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l 554 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVI 554 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHH
Confidence 8887642 1235678899999999999876 4689999999999999999964 566666665544
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 532 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 611 (2052)
Q Consensus 532 ~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~ 611 (2052)
...+...+....
T Consensus 555 ~~~l~~~~~~~~-------------------------------------------------------------------- 566 (876)
T 1qgr_A 555 MERLQQVLQMES-------------------------------------------------------------------- 566 (876)
T ss_dssp HHHHHHHHTTTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Confidence 444443321000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHH-HHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCC
Q 000146 612 ETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWK-ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG 690 (2052)
Q Consensus 612 ~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk-~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg 690 (2052)
...+.++-+ .|. .|..++.-+..++...
T Consensus 567 --------------~~~~~~d~~------------------~~~~~~~~~~~~l~~l~~~~------------------- 595 (876)
T 1qgr_A 567 --------------HIQSTSDRI------------------QFNDLQSLLCATLQNVLRKV------------------- 595 (876)
T ss_dssp --------------SCCSTTHHH------------------HHHHHHHHHHHHHHHHHTTS-------------------
T ss_pred --------------ccCChhhHH------------------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 000000000 000 0111122222111111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhCh------hHHHHH
Q 000146 691 WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGP------GFIFER 760 (2052)
Q Consensus 691 ~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~------~~Vl~~ 760 (2052)
.. .-...++..++|.++.-+.+. .++..+..++..++...+. ..+++.
T Consensus 596 -~~---------------------~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 596 -QH---------------------QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp -CH---------------------HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred -Ch---------------------hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 00 000112233334333333322 4566777777777765443 234555
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhhCCCC--CcHHHHHHHHHHHHHHHHhhChhhHhhh
Q 000146 761 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVGPDIKGFL 837 (2052)
Q Consensus 761 L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~--~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 837 (2052)
++..+....++.+|..++..+..++...|....+ +..+++.+... +.+ .+..||..+..+++.+...+|+.+..|+
T Consensus 654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l 732 (876)
T 1qgr_A 654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN-LGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732 (876)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hCCccccHHhhHHHHHHHHHHHHHhchhHHHHH
Confidence 5555533448999999999999999887753111 35667767665 766 4678999999999999999999988888
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHH
Q 000146 838 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 917 (2052)
Q Consensus 838 ~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~ 917 (2052)
..+-|.+.+.+. ... ++ +| ++..+ -....|..+++.+.
T Consensus 733 ~~~~~~l~~~~~-----~~~-~~--------------------~d------------~~~~~----~~~~~r~~~~~~~~ 770 (876)
T 1qgr_A 733 EVVLNTLQQASQ-----AQV-DK--------------------SD------------YDMVD----YLNELRESCLEAYT 770 (876)
T ss_dssp HHHHHHHHHHHT-----CCC-CT--------------------TC------------HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----ccC-CC--------------------CC------------hHHHH----HHHHHHHHHHHHHH
Confidence 666555444331 000 00 00 01000 02357888899998
Q ss_pred HHHHhccc----------cCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhCh-hhHHh-hhHHHHHHHH-
Q 000146 918 KILEEANK----------RIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGP-AVEKS-SKGVLSDILK- 982 (2052)
Q Consensus 918 ~ll~~a~~----------~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~-~~~~~-~~~llp~ll~- 982 (2052)
.++..... .+.+. ...++..+.....|. +..|+..|+.+++.++..+|. .+.+| ...+++.++.
T Consensus 771 ~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~ 849 (876)
T 1qgr_A 771 GIVQGLKGDQENVHPDVMLVQPR-VEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTE 849 (876)
T ss_dssp HHHHHHHCSSSSCCGGGGGSGGG-HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHccCcccccchHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHH
Confidence 88875322 22232 366777776666777 789999999999999999999 88888 6789999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHH
Q 000146 983 CLGDNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~ 1004 (2052)
.+.|.++.+|++|..+++.+.+
T Consensus 850 ~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 850 GRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCHhHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 16
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-23 Score=248.22 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=165.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHH------HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC---
Q 000146 645 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 715 (2052)
Q Consensus 645 l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~------Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~--- 715 (2052)
+.++|.|++||+|++||++|.+++..........+. +...+.+ .++|+|++|++.+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 678999999999999999999999874322111111 1122221 36799999999999999999986543
Q ss_pred ---CchhhHHHHHHHHHHh-hhchh--hhHHHHHHHHHHHhhhCh-hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh
Q 000146 716 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 716 ---~~~~~~~~il~~LveK-lgd~K--~r~~a~e~L~~l~E~~~~-~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~f 788 (2052)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1235678899999999 68865 789999999999998664 56677777774 9999999999999999999999
Q ss_pred CCCCCChHhH----HHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhh----HhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000146 789 GVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 860 (2052)
Q Consensus 789 G~~~l~~k~l----i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkP~ll~~Le~efeK~~~~~~ 860 (2052)
|...++.+.. ++.+.++ ++|+|++||++|+.++++||+|+|+.+ ..|+++++|+++++|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 9998887654 4456666 999999999999999999999999865 368899999999999999999988766
Q ss_pred CCCcccc
Q 000146 861 VVPKKTV 867 (2052)
Q Consensus 861 p~p~r~~ 867 (2052)
|++.+..
T Consensus 250 ~~~~~~~ 256 (278)
T 4ffb_C 250 SSKMLFE 256 (278)
T ss_dssp ----CCH
T ss_pred CCCcchh
Confidence 6665543
No 17
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.89 E-value=7.7e-22 Score=229.57 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=192.8
Q ss_pred HHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000146 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 709 (2052)
Q Consensus 631 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 709 (2052)
+++...+...+++++..+|+|++||.|++|++.|.+.+.+.. ......+.+++|+.. ++.|+|++|...+|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 455677788899999999999999999999999999987632 233346778998853 57899999999999999999
Q ss_pred HHHc----CCCchhhHHHHHHHHHHhhhchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 000146 710 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 783 (2052)
Q Consensus 710 ~~~~----~~~~~~~~~~il~~LveKlgd~K--~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~ 783 (2052)
+..+ ..++...+..++|.|++|+||+| +|+.+.++|..+++.+++..++..++.++ .+||+|+|.+|+.++..
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 8765 34677778999999999999986 89999999999999999999999999975 99999999999999999
Q ss_pred HHHHhCCCCCChHhHH---HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 784 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 784 ~i~~fG~~~l~~k~li---~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
+++.||.. . ...+ +.+.++ ++|+|++||++|+++++++|+++|+.+..++++++|..++.|++.|.+.
T Consensus 194 li~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999986 2 2345 777777 9999999999999999999999999999999999999999999999764
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.88 E-value=5.2e-20 Score=243.23 Aligned_cols=556 Identities=13% Similarity=0.105 Sum_probs=387.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..++..|.|.+|..|..|++.+.......++. ...+.++.+|... .|.+..|...+.+.+..+....+. .....
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~~---~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~ 86 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDT---IYDEDEVLLALAEQLGTFTTLVGG--PEYVH 86 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHT---CCCCHHHHHHHHHHHTTCSGGGTS--GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHhccCc--HHHHH
Confidence 35788999999999999999998877654322 2234456666432 266677888777777654443221 22344
Q ss_pred HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHH---HhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh
Q 000146 723 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 723 ~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~---l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
.+++.|..-+.| ..+|..|.++|..+++..+++.+...+++. +..+.++.+|..++..+..+...++.. ..+.
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~ 164 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAE 164 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHH
Confidence 566666544444 468999999999999988876554444433 346778999999999888877554432 2456
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
+++.+..+ +.+.++.||.+|...++.+....|... +.
T Consensus 165 l~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~---------------------------------------- 201 (588)
T 1b3u_A 165 LRQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VK---------------------------------------- 201 (588)
T ss_dssp HHHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HH----------------------------------------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HH----------------------------------------
Confidence 88888887 899999999999999999988776421 00
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~ 957 (2052)
..+.+.+...+.|.+|.+|..|++.+..+....+.. .....+++.+...+.|.+..|+..++.+
T Consensus 202 -------------~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~ 265 (588)
T 1b3u_A 202 -------------SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADK 265 (588)
T ss_dssp -------------HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 012345666678889999999999999988642110 1124577788888899999999999999
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHHHHhcCccChhHH
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGR 1029 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~~l~~~L~~~k~np~~R 1029 (2052)
++.++...|+. .+...++|.++..+.|..+.||.++..+|..++..++. +.++|.+...+.++ ++.+|
T Consensus 266 l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR 341 (588)
T 1b3u_A 266 FTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVK 341 (588)
T ss_dssp HHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHH
T ss_pred HHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHH
Confidence 99999998875 35677899999999999999999999999999998863 34566666666655 57778
Q ss_pred HHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000146 1030 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1109 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~ 1109 (2052)
..++..+.......+.......+++.+..++.|.+++||.++..++..+...+|.+.+.+.
T Consensus 342 ~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~------------------- 402 (588)
T 1b3u_A 342 SALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS------------------- 402 (588)
T ss_dssp HHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH-------------------
Confidence 7777666554332221111223444466777888888888888777776666654311100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccc
Q 000146 1110 GASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRF 1189 (2052)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~ 1189 (2052)
T Consensus 403 -------------------------------------------------------------------------------- 402 (588)
T 1b3u_A 403 -------------------------------------------------------------------------------- 402 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHH
Q 000146 1190 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLK 1269 (2052)
Q Consensus 1190 ~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k 1269 (2052)
+-+.+...+.+.+|+.|..+++.|..+....+.+.. .+.++..+...+.|++..|-..
T Consensus 403 --------------------~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 403 --------------------LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF--DEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp --------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC--CHHHHHHHHHGGGCSSHHHHHH
T ss_pred --------------------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHhcCCcHHHHHH
Confidence 001122234456777777776666654432222111 1122333333368999999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc----cccHHHHHhhhcCCChh
Q 000146 1270 VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNNR 1345 (2052)
Q Consensus 1270 ~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~----skvf~~l~~gl~sKN~r 1345 (2052)
++..+..++..+... +....++|.|+.-+.|....+|...-..+..+...++. ..++|.|+..++..++.
T Consensus 461 a~~~l~~l~~~~~~~------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~ 534 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534 (588)
T ss_dssp HHHHHHHHHHHHCHH------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHhCch------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCch
Confidence 999998887776542 23567899988777788888888877777777665554 47888888899999999
Q ss_pred hHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000146 1346 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1397 (2052)
Q Consensus 1346 ~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~ 1397 (2052)
+|..++..++.++..+|-.. .....++.+..+..|+|..||.+|..+|..+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 99999999999988877532 1123347777888999999999999998753
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.43 E-value=1.7e-10 Score=147.15 Aligned_cols=378 Identities=12% Similarity=0.069 Sum_probs=269.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 713 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~---------- 713 (2052)
.++..+.+.+-..|.+|-+.|.++-....+ .....|+..+.. .+.+..|.+.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~--~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 456777888999999999999875432111 123445555542 2346778888888888776421
Q ss_pred --CCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChh----HHHHHHHHHHhhCC--CHHHHHHHHHHHHH
Q 000146 714 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 783 (2052)
Q Consensus 714 --~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~~~K--npKv~~e~L~~L~~ 783 (2052)
..+.......+-..|++.+.+ .++ ..+..++..++....+. -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 223444445566667777766 357 77888888888876553 3667777765 455 89999999999999
Q ss_pred HHHHhCCCCC--ChHhHHHHHHhhCCCCC--cHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 784 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 784 ~i~~fG~~~l--~~k~li~~l~~~gL~~~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+++....+ ....+++.+... +.+. ++.||.+|.++++.+-.++++.+.. . .+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~------- 214 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SE------- 214 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HH-------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HH-------
Confidence 9998743222 245677777776 8888 8999999999887764322111100 0 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~-eL~~a 938 (2052)
...+.+.+...+.+.++.+|..+++.+..++......+.+. +. +++..
T Consensus 215 ------------------------------~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 215 ------------------------------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp ------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred ------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00012233344567789999999999999998655555554 46 89998
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHh---------------------ChhhHHhhhHHHHHHHHHhCCC-------cHH
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 990 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~al---------------------g~~~~~~~~~llp~ll~~l~D~-------k~~ 990 (2052)
+...+.|.+..|+..|+..+..++... ..-+.+|+..++|.+++.+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999998763 2234567889999999988643 447
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcCCC
Q 000146 991 MRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1063 (2052)
Q Consensus 991 VR~aa~~aL~~i~~~~~l~~ll~----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1063 (2052)
+|.+|..+|..++..+| +.+++ .+...|.+. ++..|..++..+......... .+.+..+++.++.+|.|+
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 44444 445555554 688999999999876654432 234566777799999999
Q ss_pred CHHHHHHHHHHHHHHHHHcChh
Q 000146 1064 SSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1064 ~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
++.||.+|..+|+.+...+|..
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988863
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.37 E-value=3.1e-10 Score=144.82 Aligned_cols=338 Identities=14% Similarity=0.099 Sum_probs=239.1
Q ss_pred cHHHHHHHHHHHHHHHHHhh-----------hhhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----h
Q 000146 104 NAPVQDKALDALIAYLKAAD-----------ADAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----D 166 (2052)
Q Consensus 104 N~~aqe~gl~al~~~l~~~~-----------~~~~-~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~----~ 166 (2052)
+..+...|...|-.+++... .... .....+-..|++. |. ..+.+ ..+..++..+...+-+ .
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~-l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-TTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHH-hCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 67888888888887764321 0011 1122344455554 44 44556 6666666666655322 4
Q ss_pred hHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHHhCCCCc--ChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHhhCC
Q 000146 167 VFLDVMEKAIKNK--VAKAVVPAIDVMFQALSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGK 240 (2052)
Q Consensus 167 ~v~e~Ll~~l~~K--~PKvv~~~l~~L~~~l~~FG~~~i--~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~lG~ 240 (2052)
.+++.|...+.+. +|.++.+++.+|..+.+.+....+ ....+++.+..++++. +..||..|...+..+..+++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~- 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK- 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence 6788888888887 899999999999999998743222 2456888899999998 78999999988777654332
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000146 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI 320 (2052)
Q Consensus 241 ~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdI 320 (2052)
... +. .. .... +
T Consensus 207 ----~~~-~~---~~---~~~~---------------------------------------------------------l 218 (462)
T 1ibr_B 207 ----ANF-DK---ES---ERHF---------------------------------------------------------I 218 (462)
T ss_dssp ----HHH-TS---HH---HHHH---------------------------------------------------------H
T ss_pred ----Hhh-hh---hH---HHHH---------------------------------------------------------H
Confidence 111 00 00 0000 0
Q ss_pred cCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChH-HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh---
Q 000146 321 LTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--- 395 (2052)
Q Consensus 321 l~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--- 395 (2052)
+ ..+.+.+.+.++..|..+++.|..++. .++.....+. .++..+...+.|.+..|+..|+..+..++...
T Consensus 219 ~-----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 M-----QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp H-----HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112334556778899999988873 4444334455 78888888888999999999999999998764
Q ss_pred ---------------h---hcchhhhhhHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 000146 396 ---------------R---THFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKT 449 (2052)
Q Consensus 396 ---------------~---~~f~~~~~~llp~LL~klkd-------kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~ 449 (2052)
+ .-+.+|...++|.++..+.+ ....+|.++..+|..++.. +..-++.+++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 373 (462)
T 1ibr_B 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (462)
T ss_dssp HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 12356778999999998854 3457899999999999986 11124566677777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 450 SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 450 ~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.+++.+|.+|..++..|..+.+.+....+.++++.++|.+..++.|+++.||.+|+.+++.+...+|.
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 88899999999999999998876654445567789999999999999999999999999999999885
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.25 E-value=1.1e-08 Score=135.38 Aligned_cols=176 Identities=14% Similarity=0.186 Sum_probs=130.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++-+.+.+.+=..|++++..+..+..... +...++..+.+.+.+.+..+...+...+..+++.- ...+..++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~ 88 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAV 88 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHH
Confidence 45666778888889999998876542211 33444555666788999999988888888876641 12355677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 487 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 487 (2052)
..+.+-+.++++.+|..|..+|..+.. ..-.+.+++.+...+.+.+|.||..++..+.++....+.. +.. ..+++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~-~~~--~~~~~ 163 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM-VED--QGFLD 163 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC-HHH--HHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh-ccc--ccHHH
Confidence 888888999999999777555544321 1224567777889999999999999999999988865432 211 36889
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 488 ICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 488 ~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.+..+|+|.++.||.+|..+|..+...-+
T Consensus 164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 164 SLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999988776543
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.15 E-value=7.5e-08 Score=127.50 Aligned_cols=387 Identities=11% Similarity=0.106 Sum_probs=252.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
.++.+.|.+.+-..|.+++..+.-....+.+.......+++ -+.++|+.+.+.+.-.+..+++.. ...+-
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~------l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~ 85 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN------CMQTDNLELKKLVYLYLMNYAKSQ----PDMAI 85 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH------TTSSSCHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHcccC----chHHH
Confidence 35677888889999999999998655444333222222333 256788888888877777776642 22334
Q ss_pred HHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHH
Q 000146 723 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 800 (2052)
Q Consensus 723 ~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~ 800 (2052)
.+++.+..-+.|+ -+|..|..+|..+....-...+++.+...+ .+++|-||..++..+..+... +...+.-..+++
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 4556666666663 468777544444332222234555566664 799999999999999998873 333332235888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHhhChh---------hHhhh---hhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000146 801 FCKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVR 868 (2052)
Q Consensus 801 ~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~---------l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r 868 (2052)
.+..+ |.+.|+.||.+|..+++.+....+.. +...+ .+..|-.+-.+-+-+.+....
T Consensus 164 ~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~---------- 232 (591)
T 2vgl_B 164 SLRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK---------- 232 (591)
T ss_dssp HHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC----------
T ss_pred HHHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC----------
Confidence 89998 99999999999999999987654322 11111 111221111111222222100
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccC--CCCChh----hHHHHHHhh
Q 000146 869 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI--QPAGTG----ELFGGLRGR 942 (2052)
Q Consensus 869 ~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I--~~~~~~----eL~~aL~~r 942 (2052)
+..+ ...+-+.+...+.+.++.+|.+|+..+..+. ..+ .+..+. .+...|..
T Consensus 233 ----------------~~~~-~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~- 290 (591)
T 2vgl_B 233 ----------------DDRE-AQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVT- 290 (591)
T ss_dssp ----------------SHHH-HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHH-
T ss_pred ----------------ChHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHH-
Confidence 0000 1223345566688899999999999887653 222 122222 33344443
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 1022 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 1022 (2052)
|.+++.+|+..|+..++.++..-...+.++.+.+ +..+.|. ..||..+.+.|..++...+++.+++.+...+.+.
T Consensus 291 L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~ 365 (591)
T 2vgl_B 291 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----FVKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEV 365 (591)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----SCCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS
T ss_pred HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----eeccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC
Confidence 3457889999999999999988766666665543 2233555 8899999888888777667788888888888765
Q ss_pred ccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1023 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1023 k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
+.+.|.+++.++..+..+++ +.....+..++..+.|....|++.+..++..+....+
T Consensus 366 --d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 366 --DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred --CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 58899999999988766543 2234566668888999999999998888777766554
No 23
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=3.9e-10 Score=152.50 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=166.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh--hhcchhhhhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 405 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 405 (2052)
..+.+...+-.+|+++...+..+.+.. ...... ..++..|++.+.|.+.. ..|+.+++.||+.. .+.+++|.-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 444455555678899999998876532 222223 47999999999988765 99999999999765 4578999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 483 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 483 (2052)
++|.+|+.++||...|+++|..|+++++.. +...+..+++.|..+|++. .||.|.+++.++.++.+.. +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999997 1234678899999999865 6999999999999999876 567888899
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+++|.+..+|+|+.++|.++|.+++..++.+++++++.++++.|
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 99999999999999999999999999999999999999999876
No 24
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.07 E-value=4.5e-05 Score=106.92 Aligned_cols=353 Identities=13% Similarity=0.118 Sum_probs=199.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 000146 651 SAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGIS 729 (2052)
Q Consensus 651 s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~Lv 729 (2052)
+.+|+.|.+++-.+..+.+..... ......++..+ +++.+.+..|...++.++..+.+-+.. ....+..+++.|+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l---~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI---PRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG---GGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 468999999988888766553321 12233344443 245555667777777777666553211 1133444555555
Q ss_pred HhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCC
Q 000146 730 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQ 808 (2052)
Q Consensus 730 eKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~ 808 (2052)
..+.+++++..|..+|..+++.++ ..-. -+..++..+..+ +.
T Consensus 536 ~~l~~~~V~~~A~~al~~l~~~~~------------------------------------~~l~p~~~~il~~l~~~-l~ 578 (963)
T 2x19_B 536 HALGNPELSVSSVSTLKKICRECK------------------------------------YDLPPYAANIVAVSQDV-LM 578 (963)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTG------------------------------------GGCTTTHHHHHHHHHHH-HH
T ss_pred HHhCCchHHHHHHHHHHHHHHHHH------------------------------------HHHHhhHHHHHHHHHHH-hc
Confidence 555555555555555555554332 1111 123344444333 33
Q ss_pred C--CcHHHHHHHHHHHHHHHHhhC-hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 000146 809 S--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 885 (2052)
Q Consensus 809 ~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lp 885 (2052)
. -+..+|..+.++++.+...+| .....|+..+-+.+...++.-.... .
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~------------------------ 629 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P------------------------ 629 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S------------------------
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C------------------------
Confidence 2 345677777888888777676 4566666665555554444321100 0
Q ss_pred cccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCC-----------------CC----ChhhHHHHHHhhhc
Q 000146 886 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRLY 944 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~-----------------~~----~~~eL~~aL~~rL~ 944 (2052)
.++. -+.+...++.|..++..-..... +. .+..+++.+...+.
T Consensus 630 --------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 693 (963)
T 2x19_B 630 --------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLS 693 (963)
T ss_dssp --------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 0000 01122334444444432111110 00 12344455444442
Q ss_pred c--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhH----HH
Q 000146 945 D--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMV----PY 1014 (2052)
Q Consensus 945 D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll----~~ 1014 (2052)
. .+..+...++.+++.++..+|..|.+|+..+++.++..+.... . .+....+..++...+.+ ..+ ..
T Consensus 694 ~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~ 770 (963)
T 2x19_B 694 KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP--Q-ASALDLTRQLVHIFAHEPAHFPPIEALFLL 770 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC--C-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHH
T ss_pred hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC--c-cHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 1 2458999999999999999999999999999988888765421 1 23445566666633321 122 22
Q ss_pred HH----HHHh-cCccChhHHHHHHHHHHHHhccCCC----CCc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-
Q 000146 1015 VT----TALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG- 1083 (2052)
Q Consensus 1015 l~----~~L~-~~k~np~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G- 1083 (2052)
+. ..+. +-...|++|...+.++...+..++. .+. +..++..+..+|.+.+.+|-+++...+..+....+
T Consensus 771 ~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 850 (963)
T 2x19_B 771 VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGE 850 (963)
T ss_dssp HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 22 2222 2111489999999999998877654 233 56666678888999999999999999999887765
Q ss_pred hhHHHHHhc
Q 000146 1084 QETIEKNLK 1092 (2052)
Q Consensus 1084 ~e~~~~~l~ 1092 (2052)
.+.+..++.
T Consensus 851 ~~~~~~~~~ 859 (963)
T 2x19_B 851 VESVGKVVQ 859 (963)
T ss_dssp SCHHHHHTT
T ss_pred hHHHHHHHH
Confidence 344444443
No 25
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.04 E-value=7.5e-06 Score=114.93 Aligned_cols=545 Identities=11% Similarity=0.099 Sum_probs=305.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh----------------cCcCHHHHHHHHHHHHHHHHHhh-hcc
Q 000146 337 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----------------TDVNIAVAVEAIQAIGNLARGLR-THF 399 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l----------------~D~N~~V~~~A~~~l~~La~~L~-~~f 399 (2052)
.|..++.+++.+...+....+.......++..+.. | .+.+..++..|+.|+..+...-. .++
T Consensus 202 ~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~ 280 (971)
T 2x1g_F 202 AYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY 280 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC
T ss_pred chhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc
Confidence 47889999999887554211111133566666555 4 12466788999999999987422 234
Q ss_pred hhhhhhHHHHHHHH-------hccCc---HHHHHHHHHHHHHHHHhc---------------CCCHHHHHHHHHHHhhc-
Q 000146 400 SGSSRFLLPVLLEK-------LKEKK---PTVAESLTQTLQAMHKAG---------------CLNLVDVVEDVKTSVKN- 453 (2052)
Q Consensus 400 ~~~~~~llp~LL~k-------lkdkK---~~V~~aa~~aL~ai~~~~---------------~~~l~~ll~~l~~~L~~- 453 (2052)
.+++..++|.++.. ..+.. ..+...+...+..+.... ...+..+++.++..+.+
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~ 360 (971)
T 2x1g_F 281 PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKP 360 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCC
Confidence 45666777776652 23323 144445555555555320 01233445555555444
Q ss_pred ----CChHHHHHHHHHHHHHHHhc---------C--hhHHHHhhhhHHHHHHHhhc---CC-----C-------hHHHHH
Q 000146 454 ----KVPLVRSLTLNWVTFCIETS---------S--KAAVLKVHKDYVPICMECLN---DG-----T-------PEVRDA 503 (2052)
Q Consensus 454 ----Knp~vR~~~l~~L~~~l~~~---------~--~~~l~~~l~~l~p~l~k~l~---Ds-----~-------~~VR~a 503 (2052)
....+...++.|+..+.+.. . ...+.+++..+++.+...+. |. + ...|.+
T Consensus 361 ~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~ 440 (971)
T 2x1g_F 361 GIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD 440 (971)
T ss_dssp SCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH
Confidence 57789999999988776521 1 12234566777777776662 11 1 124444
Q ss_pred HHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCC
Q 000146 504 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 583 (2052)
Q Consensus 504 A~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 583 (2052)
+.+++..++.++|+..+..+++.+. +.+...
T Consensus 441 ~~~~l~~~~~~~~~~~l~~~~~~l~--------~~l~~~----------------------------------------- 471 (971)
T 2x1g_F 441 ISDTFMYCYDVLNDYILEILAAMLD--------EAIADL----------------------------------------- 471 (971)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHH--------HHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHhc-----------------------------------------
Confidence 5555544444444322222222111 100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHH
Q 000146 584 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 663 (2052)
Q Consensus 584 ~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~ 663 (2052)
.-...+|+.|.+++-.
T Consensus 472 ----------------------------------------------------------------~~~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 472 ----------------------------------------------------------------QRHPTHWTKLEACIYS 487 (971)
T ss_dssp ----------------------------------------------------------------HHCTTCCHHHHHHHHH
T ss_pred ----------------------------------------------------------------cCCCCcHHHHHHHHHH
Confidence 0002588888888888
Q ss_pred HHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHH
Q 000146 664 LRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAM 742 (2052)
Q Consensus 664 L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~ 742 (2052)
+..+.+.... .......++..+...+. .|.+..|...++.++..+.+-+... ...+..+++.|+..+ |++++..|.
T Consensus 488 l~~iae~~~~~~~~~l~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~~~v~~~A~ 564 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-NSSMSAQAT 564 (971)
T ss_dssp HHHTTTC------CHHHHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHH
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-ChHHHHHHH
Confidence 8776544221 11223344444432221 2568889999999988887765432 245677777777777 466788888
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCC--CcHHHHHHHHH
Q 000146 743 KCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIK 820 (2052)
Q Consensus 743 e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~--~n~~VR~aA~~ 820 (2052)
.+|..+++.++.. +.+++ ..++..+..+ +.. .+..+|..+.+
T Consensus 565 ~al~~l~~~~~~~-----l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 565 LGLKELCRDCQLQ-----LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMF 608 (971)
T ss_dssp HHHHHHHHHCHHH-----HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHH
Confidence 8888888765421 11111 1222222222 222 34577888888
Q ss_pred HHHHHHHhhC-hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHh
Q 000146 821 LLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 899 (2052)
Q Consensus 821 ll~~Ly~~~G-~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~ 899 (2052)
+++.+...++ .....++..+-+.+++.++.-.+.... .++
T Consensus 609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--- 649 (971)
T 2x1g_F 609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK------------------------------------TPA--- 649 (971)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------CHH---
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh---
Confidence 8888887765 445666666655555555543211000 000
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCC--------CC----ChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHh
Q 000146 900 SLESPDWKVRLESIEAVNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAM 965 (2052)
Q Consensus 900 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~--------~~----~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~al 965 (2052)
+-....+.++.|..++..-...+. +. ...++++.+...+.+. +..|...++.+++.++..+
T Consensus 650 -----~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 650 -----ARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 001122344444444442111110 01 1356777777666442 5689999999999999999
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHH----HHHHHhcC-----ccChhH
Q 000146 966 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPY----VTTALTDA-----KLGAEG 1028 (2052)
Q Consensus 966 g~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~--------~ll~~----l~~~L~~~-----k~np~~ 1028 (2052)
|..|.+|+..+++.++..+..... ..+...+..++...|-+ .++.. +...|... ...|++
T Consensus 725 ~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~ 801 (971)
T 2x1g_F 725 RSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDT 801 (971)
T ss_dssp HC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHH
T ss_pred hhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchH
Confidence 999999999999999988876432 34777888888777653 22222 11222211 115889
Q ss_pred HHHHHHHHHHHhccCCC----CCc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1029 RKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+.+.+.++...+...+. .+. +..++...+.+|.-.+.++.+++...+..++..
T Consensus 802 ~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 802 METFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998887654 233 555666666777666666777888888776665
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.04 E-value=8.6e-09 Score=131.15 Aligned_cols=377 Identities=12% Similarity=0.075 Sum_probs=252.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHh-cccc-c------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNL-D------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~-~~~~-~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
+.+++.|.+.+...|..|+..|.+++.. .++. . .....|++.|. .+.+..++..++.+|..++....
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 5688899999999999999999988763 1111 0 12344555543 12377888899999888765211
Q ss_pred CCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
......+ ..++|.|+.-+.+ ..+|..|..+|..++..... .-+++.++..+.+..++.++..++..|..+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1111111 2467888887765 57899999999998874321 123566666654457899999999999888
Q ss_pred HHHhCCC--CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 785 VEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 785 i~~fG~~--~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
....+.. ..-+..+++.+..+ +.+.++.||..|..++..|.....+ ....+. +
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~----~-------- 232 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQAVI----D-------- 232 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHHHH----H--------
T ss_pred hCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHHHH----H--------
Confidence 7533121 11135678888887 9999999999999888777532111 000000 0
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 942 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r 942 (2052)
..+.+.++..+.+.+|.+|..++..|..+........+.-.-..+++.|...
T Consensus 233 ----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 233 ----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp ----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 0023467778889999999999999998875321100000002478888999
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHH
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVP 1013 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~ 1013 (2052)
|.+.+..++..|+.+|+.++........... ..++|.++..+.+..+.||..|..+|..+...... ..+++
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 9999999999999999999864333333333 36899999999999999999999999999875321 23677
Q ss_pred HHHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchhhh------HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1014 ~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~~l------l~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
.+...|.++ ++.+|..++..|...+..... ...+... +..+...+.+.+.+||+.|..++..+.
T Consensus 365 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 365 PLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 788888765 588898888877765543211 0111122 223455567888899999888777655
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.03 E-value=5.3e-08 Score=123.81 Aligned_cols=385 Identities=11% Similarity=0.047 Sum_probs=261.3
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
+-+.+.+.+...|..|...|.+++....+ +....+ ... ....+.
T Consensus 25 l~~~l~s~~~~~r~~A~~~L~~l~~~~~~---~~~~~~------~~~---------------------------~~~i~~ 68 (450)
T 2jdq_A 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPN---PPIDEV------IST---------------------------PGVVAR 68 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHSSSS---CCHHHH------HTS---------------------------TTHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCC---CcHHHH------HHc---------------------------CCcHHH
Confidence 67788999999999999999998753211 222222 000 001444
Q ss_pred HHHHhccC-cHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h-----
Q 000146 96 FKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA-KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V----- 165 (2052)
Q Consensus 96 ~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~~~~~~-~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~----- 165 (2052)
+.+++.+. |..+|..++.+|..+............ ...++.|++- |. ..+.+|+.|..++..+..... .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL-LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 55667777 999999999999887753222111111 3467777765 55 678999999999988876421 1
Q ss_pred hhHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHhCCC--CcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCch
Q 000146 166 DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 242 (2052)
Q Consensus 166 ~~v~e~Ll~~l~~-K~PKvv~~~l~~L~~~l~~FG~~--~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~ 242 (2052)
..+++.|+..+.+ .++.++..++.+|..+....+.. ..-...+++.|..++.+.|..||..+...+..+..... +
T Consensus 148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~- 225 (450)
T 2jdq_A 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-D- 225 (450)
T ss_dssp TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-H-
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-H-
Confidence 2456777788875 78999999999998877543221 11236788999999999999999988877766553210 0
Q ss_pred hhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000146 243 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 322 (2052)
Q Consensus 243 l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~ 322 (2052)
. .+.+- +. + +
T Consensus 226 -----------~-~~~~~---~~------------------------------~-----------------------~-- 235 (450)
T 2jdq_A 226 -----------K-IQAVI---DA------------------------------G-----------------------V-- 235 (450)
T ss_dssp -----------H-HHHHH---HT------------------------------T-----------------------T--
T ss_pred -----------H-HHHHH---Hc------------------------------C-----------------------c--
Confidence 0 00000 00 0 0
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++.... ....-+ ..+++.|...+.+.+..|+..|+.+|+.++.+-.....
T Consensus 236 -i--~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~ 312 (450)
T 2jdq_A 236 -C--RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312 (450)
T ss_dssp -H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -H--HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0 134455667789999999999998874311 000000 13778888899999999999999999999875433333
Q ss_pred hhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-CCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000146 401 GSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~~-~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-~~l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
... ..++|.|+..+++..+.|+..+..+|..++..+. ... ..+++.|...++++++.+|..++..|..++...
T Consensus 313 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 333 3789999999999999999999999999987511 011 236677888889999999999999999988754
Q ss_pred ChhH------HHHhhhhH-----HHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 474 SKAA------VLKVHKDY-----VPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 474 ~~~~------l~~~l~~l-----~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
+... ..++...+ ++.+..++++.+.+||+.|..++..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 393 EQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3210 11233333 577888889999999999888776554
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.03 E-value=3.4e-08 Score=129.01 Aligned_cols=382 Identities=10% Similarity=0.050 Sum_probs=260.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
+-+.|.+.+|..|..|...|.+++... .++....+ .. ....+.
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~---~~~~~~~~------~~----------------------------~g~i~~ 134 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSRE---HRPPIDVV------IQ----------------------------AGVVPR 134 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCS---SSCSHHHH------HH----------------------------TTCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCC---CCccHHHH------HH----------------------------CCCHHH
Confidence 456788899999999999999887542 12212211 00 011555
Q ss_pred HHHHhccC-cHHHHHHHHHHHHHHHHHhhhhhhhhh--HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h----
Q 000146 96 FKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA--KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V---- 165 (2052)
Q Consensus 96 ~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~~~~~~--~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~---- 165 (2052)
+.+++.+. |..+|..|+.+|..+...... ....+ ...++.|+.- |. ..+.+|+.|..++..+..... .
T Consensus 135 Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~l-L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 135 LVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVDADAVPLFIQL-LYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHH-HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 66778886 999999999999877653221 11111 2345666654 44 688999999999998875421 1
Q ss_pred -hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC--cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCch
Q 000146 166 -DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 242 (2052)
Q Consensus 166 -~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~--i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~ 242 (2052)
..+++.|+..+.+.++.++..++.+|..+...-+... .-...+++.|..++.|.|..||..+..++..|..... .
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~- 290 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-E- 290 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-H-
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-H-
Confidence 2456777888888889999999888888775432211 1235688999999999999999999888877663311 0
Q ss_pred hhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000146 243 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 322 (2052)
Q Consensus 243 l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~ 322 (2052)
..+.+ ++. + +
T Consensus 291 ------------~~~~~---~~~------------------------------~-----------------------~-- 300 (530)
T 1wa5_B 291 ------------AIQAV---IDV------------------------------R-----------------------I-- 300 (530)
T ss_dssp ------------HHHHH---HHT------------------------------T-----------------------C--
T ss_pred ------------HHHHH---Hhc------------------------------C-----------------------c--
Confidence 00001 000 0 0
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++... .....-+ ..+++.|...+.+.+..|+..|+.+|+.|+.+-.....
T Consensus 301 -v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 301 -P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp -H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0 13445566788999999999998887421 1000000 24677888899988999999999999999875433333
Q ss_pred hhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 401 GSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 401 ~~~-~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~----l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
.++ ..++|.|+..+.+....|+..+..+|..++.. ..+ . ..+++.|...+.+.++.++..++..|..++
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 36889999999999999999999999999875 221 1 125677888889999999999999999988
Q ss_pred HhcChh---------HHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 471 ETSSKA---------AVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 471 ~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
...+.. .+...+. ..++.+..+++|.+++|++.|..++..+.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 754321 1111121 24778888999999999998887776544
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.02 E-value=0.00047 Score=96.58 Aligned_cols=589 Identities=13% Similarity=0.082 Sum_probs=317.0
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcc----hhhhhhHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLPV 409 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp~ 409 (2052)
+.+=..|++|-+.|..+-+.| ++-. .+..++. +.+..|+..|+.++....+.--..+ ..+.+..+-.
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p-----~~~~---~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 107 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP-----QAWH---FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFT 107 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST-----THHH---HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH-----HHHH---HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHH
Confidence 456778999998888876543 2222 2333344 6678899999999988776422223 2233333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC---------
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS--------- 474 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~-~~~l~~ll~~l~~~L~~-----Knp~vR~~~l~~L~~~l~~~~--------- 474 (2052)
++.......+.|+..+..++..++.+. ...-++++++|...+++ .++..+...+.+|..+.+...
T Consensus 108 ~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 108 QITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 333332235889999999999999871 12346888999888765 256677888888887765320
Q ss_pred ---hhHHHHhhhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHhCChhH--HHhHhhc----c-----HHHHHHHHHH
Q 000146 475 ---KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKL----D-----DVRRNKLSEM 538 (2052)
Q Consensus 475 ---~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~Ge~~~--~~~l~~L----d-----~~k~kkI~e~ 538 (2052)
+..+...++.+++.+..++.+... .++.++.+|+..... +|.... .++++.+ + ....+-+.+.
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNA 266 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 111234557788888888876543 489999999977666 554211 2222211 0 0111111111
Q ss_pred HhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCC
Q 000146 539 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 618 (2052)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~ 618 (2052)
+.+. .++
T Consensus 267 ~~~~------------------------------------------~~~------------------------------- 273 (963)
T 2x19_B 267 ISQP------------------------------------------DAQ------------------------------- 273 (963)
T ss_dssp HTCT------------------------------------------TGG-------------------------------
T ss_pred Hccc------------------------------------------ccc-------------------------------
Confidence 1100 000
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHh----cc---ccchHHHHHHHHH---hcC
Q 000146 619 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----VQ---NLDQSVEILVRLV---CML 688 (2052)
Q Consensus 619 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~----~~---~~~~~~~~Lv~~L---~~~ 688 (2052)
...-....+-..+..++ +.+...+...+......-.+-+..+.+. .. ........++.++ ...
T Consensus 274 ------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~ 346 (963)
T 2x19_B 274 ------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGI 346 (963)
T ss_dssp ------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred ------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 00000011111111110 1111112222211111111111111111 00 0001122222222 123
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHHhhhc------------h-----hhhHH
Q 000146 689 PGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTRAH 740 (2052)
Q Consensus 689 pg~~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgd------------~-----K~r~~ 740 (2052)
|+.-+.+..|...++++|..+++....+ ....+..+++.++.++.- . ..|..
T Consensus 347 ~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~ 426 (963)
T 2x19_B 347 PGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD 426 (963)
T ss_dssp SSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHH
Confidence 4321122235667777777777632211 123444556666666521 0 13667
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHH---h----hCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcH
Q 000146 741 AMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAA 812 (2052)
Q Consensus 741 a~e~L~~l~E~~~~~~Vl~~L~~~l---~----~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~ 812 (2052)
+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......- .+..+++.+.. +.+.++
T Consensus 427 ~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~~~ 503 (963)
T 2x19_B 427 ISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISISNV 503 (963)
T ss_dssp HHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCCSH
T ss_pred HHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCCcH
Confidence 78888888887763 3344333322 2 457899999998888887764332211 13456665543 555689
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccc
Q 000146 813 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 892 (2052)
Q Consensus 813 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~ 892 (2052)
.||..+..+++.+..+++..- .++..
T Consensus 504 ~vr~~~~~~l~~~~~~l~~~~-~~l~~----------------------------------------------------- 529 (963)
T 2x19_B 504 QLADTVMFTIGALSEWLADHP-VMINS----------------------------------------------------- 529 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHHCH-HHHTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCH-HHHHH-----------------------------------------------------
Confidence 999999999998887664321 12211
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc--cchHHHHHHHHHHHHHHHHHhC-hhh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-PAV 969 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~--DsN~~V~~~Al~~l~~la~alg-~~~ 969 (2052)
+-+.++..+.+ -++|..|...+..+++.+...+.|. +.+++..|...+. +.....+...+++++.++.+++ ..+
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 12234444543 4577888999999998766667776 4888888887775 3467788899999999999887 778
Q ss_pred HHhhhHHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHH--HhcCccChhHHHHHHHHHHHH
Q 000146 970 EKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTA--LTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D-----~k~~VR---~aa~~aL~~i~~~~~l~~ll~~l~~~--L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.+|+..++++++..+.. ..+..+ ....++|..++..++...- ..+... ....+ .+..+..+...+..
T Consensus 607 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 683 (963)
T 2x19_B 607 LKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQQ- 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHHH-
Confidence 99999999999887642 233333 3556666677776642100 000000 00000 00000111112211
Q ss_pred hccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChh
Q 000146 1040 LTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1040 l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
+.+.+.-++.... .+.+|++.+..++..+...+|.+
T Consensus 684 ---------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 684 ---------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp ---------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred ---------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc
Confidence 1222222333222 35689999999999999999865
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.99 E-value=8e-09 Score=135.03 Aligned_cols=377 Identities=13% Similarity=0.084 Sum_probs=252.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc--c-----hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHHcC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~-----~~~~~Lv~~L~~~pg~~Ds-N~qV~~~~Le~l~~l~~~~~ 714 (2052)
+.++..|.+.++..|..|+..|.+++...... . .....|+.+ +.+. +..|...++.+|..++....
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 67889999999999999999999887542111 0 112233333 3444 77888888888887765311
Q ss_pred CCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--h-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~-----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
......+ ..++|.|+.-+.+ ..++..|..+|..++..... + -+++.|+..+ .+.++.++..++..|..+
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 1111111 2356777776654 57899999999998864211 1 2355566665 568899999999888888
Q ss_pred HHHhCCCC--CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 785 VEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 785 i~~fG~~~--l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
....+... .....+++.+..+ +.+.++.||..|..+++.|...... ....+ ++ .
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~------------~~~~~---~~-~------- 298 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQE------------AIQAV---ID-V------- 298 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHH------------HHHHH---HH-T-------
T ss_pred hCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHH------------HHHHH---Hh-c-------
Confidence 75331211 1234677778787 9999999999999999887643111 11111 00 0
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 942 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r 942 (2052)
.+.+.++..+.+.+|.+|..|+..|..++.......+.-.-..+++.|...
T Consensus 299 -----------------------------~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 349 (530)
T 1wa5_B 299 -----------------------------RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349 (530)
T ss_dssp -----------------------------TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH
Confidence 023567788888999999999999998874211000000012477888999
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hhh
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DKM 1011 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----------~~l 1011 (2052)
|.+.+..++..|+.+|+.++.........++ ..++|.++..|.+....||..|..+|..++...+. ..+
T Consensus 350 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 9999999999999999999864322233333 35789999999999999999999999999876432 136
Q ss_pred HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchh------hhHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000146 1012 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1012 l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~------~ll~pl~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
++.+...|.+. ++.+|..++..|...+..... ..... ..+..|...+.|.+.+|++.|..+|..
T Consensus 430 l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 430 IKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp HHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77788888765 688998888888776653211 01111 123446666789999999999888876
Q ss_pred HHHH
Q 000146 1078 ILRA 1081 (2052)
Q Consensus 1078 l~~~ 1081 (2052)
+...
T Consensus 508 ~~~~ 511 (530)
T 1wa5_B 508 YFGE 511 (530)
T ss_dssp HSSS
T ss_pred HCCc
Confidence 6544
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.95 E-value=2.3e-06 Score=113.71 Aligned_cols=473 Identities=11% Similarity=0.046 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHH
Q 000146 424 SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 503 (2052)
Q Consensus 424 aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~a 503 (2052)
++...+..++.. ........++...+.+++...|+-...++..++... +. .+-.++..+.+-|.|+++.||..
T Consensus 54 ~l~kli~~~~~G--~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e----~~~l~in~l~kDL~~~n~~vr~l 126 (618)
T 1w63_A 54 NVAKLLYMHMLG--YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD----VHLLMTNCIKNDLNHSTQFVQGL 126 (618)
T ss_dssp HHHHHHHHHHTT--CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHSCSSSHHHHH
T ss_pred HHHHHHHHHHcC--CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHhcCCCCHhHHHH
Confidence 344444433332 345667777778888899888888777776655432 11 12456788888999999999999
Q ss_pred HHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCC
Q 000146 504 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 583 (2052)
Q Consensus 504 A~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 583 (2052)
|..+++.+. ...+ .+.+-
T Consensus 127 AL~~L~~i~----~~~~---~~~l~------------------------------------------------------- 144 (618)
T 1w63_A 127 ALCTLGCMG----SSEM---CRDLA------------------------------------------------------- 144 (618)
T ss_dssp HHHHHHHHC----CHHH---HHHHH-------------------------------------------------------
T ss_pred HHHHHHhcC----CHHH---HHHHH-------------------------------------------------------
Confidence 888887654 1111 11100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHH
Q 000146 584 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 663 (2052)
Q Consensus 584 ~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~ 663 (2052)
+.+...|.|.+.-.|..|+..
T Consensus 145 -----------------------------------------------------------~~l~~~L~~~~~~VRk~A~~a 165 (618)
T 1w63_A 145 -----------------------------------------------------------GEVEKLLKTSNSYLRKKAALC 165 (618)
T ss_dssp -----------------------------------------------------------HHHHHHHHSCCHHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHcCCCHHHHHHHHHH
Confidence 122333444455555555555
Q ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh----------
Q 000146 664 LRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA---------- 733 (2052)
Q Consensus 664 L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg---------- 733 (2052)
+..++....+. .+.++..+. ..+.|.|..|+..++.++..+....+.. ...+..++|.++..+.
T Consensus 166 l~~l~~~~p~~---v~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~ 239 (618)
T 1w63_A 166 AVHVIRKVPEL---MEMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPE 239 (618)
T ss_dssp HHHHHHHCGGG---GGGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHChHH---HHHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555432111 011111111 2345666666666666655544321110 0122233444443322
Q ss_pred -------chhhhHHHHHHHHHHHhhhChh------HHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhH
Q 000146 734 -------DIKTRAHAMKCLTTFSEAVGPG------FIFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 798 (2052)
Q Consensus 734 -------d~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l--~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~l 798 (2052)
++-.+....++|..++... ++ -++..+++.. .++.++-|+.+++..+.. .+...--....
T Consensus 240 ~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~----l~~~~~l~~~a 314 (618)
T 1w63_A 240 HDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD----IKSESGLRVLA 314 (618)
T ss_dssp TCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH----SCCCHHHHHHH
T ss_pred ccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 2233444445555554321 11 1233333221 123445677777766644 22210001234
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh-------hccHHHH-HHHHHHHhcCCCCCCCCCccccccc
Q 000146 799 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-------DVKPALL-SALDAEYEKNPFEGTVVPKKTVRAS 870 (2052)
Q Consensus 799 i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-------~lkP~ll-~~Le~efeK~~~~~~p~p~r~~r~~ 870 (2052)
+..+..+ +.+++++||..|...++.+....+..+..++. +-.+.+. ..++ -+-++..
T Consensus 315 ~~~L~~~-L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale-lL~~l~~------------- 379 (618)
T 1w63_A 315 INILGRF-LLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME-LSFALVN------------- 379 (618)
T ss_dssp HHHHHHH-HTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH-HHHHHCC-------------
T ss_pred HHHHHHH-HhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH-HHHHHcc-------------
Confidence 5556666 88899999999999999887664433333221 1111111 0111 0001100
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHH
Q 000146 871 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 950 (2052)
Q Consensus 871 ~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V 950 (2052)
...+ ..|.+++..-+.+.+-..|.+++..|..++.. ..+. +...+..|...|.+.+..+
T Consensus 380 ---------------~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k----~~~~-~~~~v~~ll~lL~~~~~~v 438 (618)
T 1w63_A 380 ---------------GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAEK----YAPS-KRWHIDTIMRVLTTAGSYV 438 (618)
T ss_dssp ---------------SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS----SCCC-HHHHHHHHHHHHHHTGGGS
T ss_pred ---------------cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----hCcc-HHHHHHHHHHHHHhccchh
Confidence 0001 12445677777777888899999999888752 2222 4677888888888777777
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHH
Q 000146 951 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYV 1015 (2052)
Q Consensus 951 ~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D--~k~~VR~aa~~aL~~i~~~~~-------------l~~ll~~l 1015 (2052)
...++..+..+...- +.+.. .++..++..+.+ ....+..++.-+|+.+...+. ...+++.+
T Consensus 439 ~~~~~~~l~~ii~~~-p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l 514 (618)
T 1w63_A 439 RDDAVPNLIQLITNS-VEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDIL 514 (618)
T ss_dssp CSSHHHHHHHHHHHS-CSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-hhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHH
Confidence 777777777777643 33332 234444444442 223344467888888876542 23455556
Q ss_pred HHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1016 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1016 ~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
...+.+...++.+|..++..+.+++...+. ..+.+.. +-.+..|.+.|||..|...+..+
T Consensus 515 ~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 515 ESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 665542112588999999999887766542 2444444 44566899999999999766544
No 32
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.95 E-value=0.00015 Score=101.82 Aligned_cols=570 Identities=11% Similarity=0.084 Sum_probs=305.5
Q ss_pred cCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 335 ATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLITD---VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~-~-~ki~~~dy~~l~~~L~k~l~D---~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
+.+=..|.-|+..|+..+. . ..+...+...+-..|...+.. ....|+...+.+|..+++..-+ ....+++.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~ 126 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG----EWPGAIEE 126 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC----C------H
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc----cccHHHHH
Confidence 3455678889998888663 2 345555555555555555542 2578999999999999987644 45678888
Q ss_pred HHHHhccC------cHHHHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHhhc-CCh-------HHH
Q 000146 410 LLEKLKEK------KPTVAESLTQTLQAMHKA----------------GCLNLVDVVEDVKTSVKN-KVP-------LVR 459 (2052)
Q Consensus 410 LL~klkdk------K~~V~~aa~~aL~ai~~~----------------~~~~l~~ll~~l~~~L~~-Knp-------~vR 459 (2052)
|+..++.. .+..++.+...|..+.+- ....++.+++-+...+++ .++ .++
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~ 206 (971)
T 2x1g_F 127 VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNM 206 (971)
T ss_dssp HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 88888664 566777888888877641 012344555555555542 222 788
Q ss_pred HHHHHHHHHHHHh--cChhHHHHhhhhHHHHHHHhh----------------cCCChHHHHHHHHHHHHHHHHhCChhHH
Q 000146 460 SLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECL----------------NDGTPEVRDAAFSVLAAIAKSVGMRPLE 521 (2052)
Q Consensus 460 ~~~l~~L~~~l~~--~~~~~l~~~l~~l~p~l~k~l----------------~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~ 521 (2052)
..++..+..++.. .+.. ....+++.+.. + .+.++++|++|.+|+..+...-......
T Consensus 207 ~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 207 NRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred HHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 8888888887774 3332 22456666655 3 2357899999999999988652211112
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCC
Q 000146 522 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601 (2052)
Q Consensus 522 ~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 601 (2052)
+++..+-+.-......+.....
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~---------------------------------------------------------- 303 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEW---------------------------------------------------------- 303 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHh----------------------------------------------------------
Confidence 2222211111110011100000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHH---------HHHHHHHHHHhcc
Q 000146 602 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE---------AISSLRQQVEAVQ 672 (2052)
Q Consensus 602 ~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~---------ale~L~~~v~~~~ 672 (2052)
+ +|. +. ++....+.. ++..+... |..-+. ....+.
T Consensus 304 ----------------~--~d~-~~----~~~~~~l~~-----l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~------- 347 (971)
T 2x1g_F 304 ----------------K--REN-DN----EDIIVHIYM-----LFVSSVER-HSTLLLSGITSADPELSILVH------- 347 (971)
T ss_dssp ----------------S--SSC-SC----SHHHHHHHH-----HHHHHHHH-THHHHHHHHHTCCHHHHHHHH-------
T ss_pred ----------------c--ccc-cc----hHHHHHHHH-----HHHHHHHH-HHHHHHHHhccCcccccHHHH-------
Confidence 0 000 00 111111111 11111110 000000 001111
Q ss_pred ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------C----CchhhHHHHHHHHHHhhh-------
Q 000146 673 NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------K----FPKKCVVLCLLGISERVA------- 733 (2052)
Q Consensus 673 ~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------~----~~~~~~~~il~~LveKlg------- 733 (2052)
...+.++.+.. .||+...+..|...++++|..+++... . .....+..+++.++.++.
T Consensus 348 ---~~l~~ll~~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~ 423 (971)
T 2x1g_F 348 ---RIVQEILHCTD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSL 423 (971)
T ss_dssp ---HHHHHHHHHHH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTT
T ss_pred ---HHHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 12233444332 356554455688888888888776321 1 113455667777777762
Q ss_pred ---c-------hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHh---h-----CCCHHHHHHHHHHHHHHHHHhCCCC-CC
Q 000146 734 ---D-------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LK 794 (2052)
Q Consensus 734 ---d-------~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~---~-----~KnpKv~~e~L~~L~~~i~~fG~~~-l~ 794 (2052)
| ...|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~ 502 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQ 502 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CH
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 1 1246778889999998776 445555544331 2 2789999999988887755333211 12
Q ss_pred hHhHHHHHHhhCC-CCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000146 795 LKDLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 873 (2052)
Q Consensus 795 ~k~li~~l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~ 873 (2052)
+..+++.+..+ . .+.++.||..|..+++.+..|++... .|+..+-|.++..+
T Consensus 503 l~~l~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l------------------------- 555 (971)
T 2x1g_F 503 IPRLMRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL------------------------- 555 (971)
T ss_dssp HHHHHHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-------------------------
Confidence 44566655543 2 24689999999999999998887532 34433333333333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc--chHHHH
Q 000146 874 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLV 951 (2052)
Q Consensus 874 ~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D--sN~~V~ 951 (2052)
+ .+++..|...+..+++.+...+.|. +.+++..|...+.. ......
T Consensus 556 -----------------------------~--~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 556 -----------------------------N--SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp -----------------------------H--SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHH
T ss_pred -----------------------------C--hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHH
Confidence 1 2234556666667666544444444 47777777777755 456788
Q ss_pred HHHHHHHHHHHHHhC-hhhHHhhhHHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcc
Q 000146 952 MATLITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 952 ~~Al~~l~~la~alg-~~~~~~~~~llp~ll~~l~----D~--k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~ 1024 (2052)
...+++++.++.+++ ..+.+|+..++++++..+. .. .+.-+.....+++.+.. +...+... .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~-~ 672 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTD-V 672 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCC-c
Confidence 899999999998876 6677888888888887654 21 22223333344443321 11222210 0
Q ss_pred ChhHHHHH--HHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1025 GAEGRKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1025 np~~R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
.+ .+.+. -.-+..++ ..+.+++.-++.... .+.+|.+.+..++..+...+|.+ +.+++
T Consensus 673 ~~-~~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 673 DE-QATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp ------------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred Cc-ccccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 00 00000 00000001 123334444443332 46789999999999999988875 56664
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.93 E-value=1e-06 Score=120.22 Aligned_cols=500 Identities=12% Similarity=0.071 Sum_probs=285.4
Q ss_pred ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----
Q 000146 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 436 (2052)
Q Consensus 361 dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~---- 436 (2052)
.|..-+..+...|.+.+..++..+++.+..+... -.....+|.|+..+.+..+.|++.+..+|..+....
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444456677777777777778777777754321 233678899999999999999999999999987531
Q ss_pred -CCCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 437 -CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 437 -~~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
......+++.|+..|.+. ++.+|..++..|..+.. .... .... -...+|.|+.+|.+.++.||..|..+|..+..
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 011246788888888754 89999999999988443 2211 1111 13589999999999999999999999998886
Q ss_pred HhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCC
Q 000146 514 SVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 593 (2052)
Q Consensus 514 ~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s 593 (2052)
...+. ++.+.+ . +
T Consensus 264 ~~~~~-------------~~~v~~---~-g-------------------------------------------------- 276 (780)
T 2z6g_A 264 HQEGA-------------KMAVRL---A-G-------------------------------------------------- 276 (780)
T ss_dssp HSTTH-------------HHHHHH---T-T--------------------------------------------------
T ss_pred CChhh-------------HHHHHH---c-C--------------------------------------------------
Confidence 54321 111111 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccc
Q 000146 594 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 673 (2052)
Q Consensus 594 ~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~ 673 (2052)
+ -+.++..|.+.+|+.|..++..|..+.....+
T Consensus 277 ---------------------------------------~--------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 277 ---------------------------------------G--------LQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp ---------------------------------------H--------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------C--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 0 02344555556666666665555533211000
Q ss_pred ------cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHH
Q 000146 674 ------LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT 747 (2052)
Q Consensus 674 ------~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~ 747 (2052)
.....+.|++++.. .....+...+..++..+... ...+..
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~~----------------------~~~~~~------- 355 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKVLSVC----------------------SSNKPA------- 355 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHTS----------------------TTHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcC----------------------hHHHHH-------
Confidence 00123344444321 01111222222333222210 001100
Q ss_pred HHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 748 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 748 l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
+++ .-+++.|+..+ .+.++.++..++..|..+...... ......+++.+..+ +.+.++.||..|..+|+.|..
T Consensus 356 i~~----~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 356 IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHH----TTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS
T ss_pred HHH----hchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 000 01234444443 455777777777777776643322 22346788888888 999999999999999987743
Q ss_pred hhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-CCh
Q 000146 828 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDW 906 (2052)
Q Consensus 828 ~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-~~W 906 (2052)
.. +.....+ . +. + ..+.|+..+.+ .+|
T Consensus 429 ~~-~~~~~~i-----------~----~~---g---------------------------------~i~~Lv~lL~~~~~~ 456 (780)
T 2z6g_A 429 NN-YKNKMMV-----------C----QV---G---------------------------------GIEALVRTVLRAGDR 456 (780)
T ss_dssp SC-HHHHHHH-----------H----TT---T---------------------------------HHHHHHHHHHHHTTC
T ss_pred CC-HHHHHHH-----------H----HC---C---------------------------------CHHHHHHHHHccCCH
Confidence 21 1111100 0 00 0 01233444433 234
Q ss_pred -HHHHHHHHHHHHHHHhccc------cCCCCChhhHHHHHHhhhccchH-HHHHHHHHHHHHHHHHhChhhHHhh--hHH
Q 000146 907 -KVRLESIEAVNKILEEANK------RIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--KGV 976 (2052)
Q Consensus 907 -k~R~eale~L~~ll~~a~~------~I~~~~~~eL~~aL~~rL~DsN~-~V~~~Al~~l~~la~alg~~~~~~~--~~l 976 (2052)
.+|..|+..|..|...... .+. -...++.|...|.+.+. .|+..|+.+|+.|+. +......+ ..+
T Consensus 457 ~~v~~~Al~aL~nL~~~~~~~~~~~~~v~---~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~ 531 (780)
T 2z6g_A 457 EDITEPAICALRHLTSRHQDAEMAQNAVR---LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGA 531 (780)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHH---HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHH---HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCC
Confidence 7788888888776421000 000 02246778888877664 899999999999984 33322221 246
Q ss_pred HHHHHHHhCCCc----------------------HHHHHHHHHHHHHHHHhc------CchhhHHHHHHHHhcCccChhH
Q 000146 977 LSDILKCLGDNK----------------------KHMRECTLTVLDAWLAAV------HLDKMVPYVTTALTDAKLGAEG 1028 (2052)
Q Consensus 977 lp~ll~~l~D~k----------------------~~VR~aa~~aL~~i~~~~------~l~~ll~~l~~~L~~~k~np~~ 1028 (2052)
+|.+++.|.+.. ..++.++..||..+.... .-...++.|...|.+. ++.+
T Consensus 532 i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v 609 (780)
T 2z6g_A 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENI 609 (780)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHH
Confidence 778877776533 346667777777653210 0123567788888876 5888
Q ss_pred HHHHHHHHHHHhccCCCC-Cch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1029 RKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
|..++..|..+... ... ..+ ...+.+|...+.|.+.+||+.|..+|..+...-+
T Consensus 610 ~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 610 QRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 88888877765421 110 011 1245668888999999999999999998887665
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.90 E-value=4.3e-08 Score=127.97 Aligned_cols=379 Identities=12% Similarity=0.077 Sum_probs=254.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-cc-c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~-~-----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
+.++..|.+.++..|..|+..|..++.... +. . .....|+.+|. .+.+..+...++.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 0 12345566553 122377888888888887763211
Q ss_pred CchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 000146 716 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 785 (2052)
Q Consensus 716 ~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~~-----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i 785 (2052)
.....+ ..++|.|+.-+.+ ..++..|..+|..++..... .. +++.|+..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 56899999999998864221 11 35566666546789999999998888877
Q ss_pred HHhCCCC-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCc
Q 000146 786 EDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 864 (2052)
Q Consensus 786 ~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~ 864 (2052)
....... .-...+++.+..+ +.+.++.||..|..+++.|-....... +.+-+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~------------~~~~~-------------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKI------------QAVIE-------------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHH------------HHHHH--------------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHH------------HHHHH--------------
Confidence 5431111 1235678888888 999999999999998877653211111 00000
Q ss_pred cccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc
Q 000146 865 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 944 (2052)
Q Consensus 865 r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~ 944 (2052)
..+.+.++..+.+.+|.+|..|+..|..+........+.-.-..+++.|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 002356778888999999999999999887521110000001346788888888
Q ss_pred cc-hHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000146 945 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 1014 (2052)
Q Consensus 945 Ds-N~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~~ 1014 (2052)
+. +..++..|+.+|+.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 88 999999999999999863222222222 36789999999999999999999999999887321 245677
Q ss_pred HHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchhh------hHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1015 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1015 l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+...|.+. ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888765 578888888887776643211 111111 23346666789999999999988876654
Q ss_pred H
Q 000146 1081 A 1081 (2052)
Q Consensus 1081 ~ 1081 (2052)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 4
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.88 E-value=3.9e-07 Score=118.90 Aligned_cols=386 Identities=11% Similarity=0.037 Sum_probs=258.5
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
|-+.+.+.+|..|..|-..|.+++....+ +....+ ... ...+.
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~---~~~~~~------~~~----------------------------g~v~~ 121 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERS---PPIEEV------IQS----------------------------GVVPR 121 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSS---CCHHHH------HHT----------------------------TCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCC---chHHHH------HHC----------------------------CCHHH
Confidence 46778899999999999999988754221 111111 000 11455
Q ss_pred HHHHhccCc-HHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h-----
Q 000146 96 FKKTVADSN-APVQDKALDALIAYLKAADADAGRYA-KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V----- 165 (2052)
Q Consensus 96 ~~k~v~DsN-~~aqe~gl~al~~~l~~~~~~~~~~~-~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~----- 165 (2052)
+.+++.+.+ ..+|+.|+.+|..+...........+ ...++.|+.- |. ..+.+|+.|..++..+..... .
T Consensus 122 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~ 200 (528)
T 4b8j_A 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 200 (528)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH-hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 566777776 99999999999887753222111111 2467777765 55 688999999999988875421 1
Q ss_pred hhHHHHHHHHh-hccChhhHHHHHHHHHHHHHHhCCCC-cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh
Q 000146 166 DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 243 (2052)
Q Consensus 166 ~~v~e~Ll~~l-~~K~PKvv~~~l~~L~~~l~~FG~~~-i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l 243 (2052)
..+++.|+..+ .+.++.++..++.+|..+........ .-...+++.|..++.+.|..||..+..++..|.... +
T Consensus 201 ~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~-- 276 (528)
T 4b8j_A 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--N-- 276 (528)
T ss_dssp TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC--H--
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--H--
Confidence 13456677777 66788999999888888775432211 123568899999999999999999888877665321 1
Q ss_pred hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 244 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 244 ~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
.. .+.+- +. + +
T Consensus 277 -~~---------~~~~~---~~------------------------------g-----------------------~--- 287 (528)
T 4b8j_A 277 -DK---------IQAVI---EA------------------------------G-----------------------V--- 287 (528)
T ss_dssp -HH---------HHHHH---HT------------------------------T-----------------------C---
T ss_pred -HH---------HHHHH---Hc------------------------------C-----------------------H---
Confidence 00 00010 00 0 0
Q ss_pred CccchhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCCC-hHHHHHHHHHHhcCc-CHHHHHHHHHHHHHHHHHhhhcch
Q 000146 324 LEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGD-FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~d-y~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++.... ....- -..+++.|...+.+. +..|+..|+.+|+.|+.+-.....
T Consensus 288 v--~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 288 C--PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred H--HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0 235555677788889999999988874211 00000 024577888888877 999999999999999975333222
Q ss_pred hh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000146 401 GS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~-~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
.. -..++|.|+..+.+....|+..+..+|..+...+... . ..+++.|...|.+.++.++..++..|..++...
T Consensus 366 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 22 2367899999999999999999999999998751111 1 245677888899999999999999999988654
Q ss_pred Chh---------HHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 474 SKA---------AVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 474 ~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
... .+...+. ..+..+..+.++.+++|++.|..++..++..
T Consensus 446 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 446 ETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 220 1122222 2366788889999999999999988766543
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.81 E-value=5e-06 Score=113.52 Aligned_cols=517 Identities=13% Similarity=0.069 Sum_probs=298.8
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 406 (2052)
.+...|.+.+...|..++..+..+.. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+........- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888888764421 111 1456777888888889999999999999999754321111 12368
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~-----l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
++.|+..++.. .+.++..+..+|..+... ... -...++.|...|++.++.+|..++..|..+........ ..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HH
Confidence 99999999754 788999999999886542 000 12467788888999999999999999999876543221 11
Q ss_pred h-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Q 000146 481 V-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 559 (2052)
Q Consensus 481 ~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~ 559 (2052)
. -...+|.++++|.+.+..||..+..++..+.. ++......+-.-+. -..+...+...
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~----------------- 330 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY----------------- 330 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC-----------------
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC-----------------
Confidence 1 14588999999999999999999999986652 33221111110000 00111111100
Q ss_pred CCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhc
Q 000146 560 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 639 (2052)
Q Consensus 560 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ 639 (2052)
+.+.....+.
T Consensus 331 ---------------------------------------------------------------------~~~~~~~~a~- 340 (780)
T 2z6g_A 331 ---------------------------------------------------------------------TYEKLLWTTS- 340 (780)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHH-
T ss_pred ---------------------------------------------------------------------CHHHHHHHHH-
Confidence 0011100000
Q ss_pred cCcHHHHHhhh-cCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 640 LIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 640 ll~~~l~~~L~-s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
.++..|. +...+.. ++.. .....|+.+ +.+.+..+...++.+|..++.......
T Consensus 341 ----~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~- 395 (780)
T 2z6g_A 341 ----RVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE- 395 (780)
T ss_dssp ----HHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS-
T ss_pred ----HHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh-
Confidence 0111111 1111110 0000 012223322 344566778888888888776543321
Q ss_pred hhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHh
Q 000146 719 KCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~Kn-pKv~~e~L~~L~~~i~~f 788 (2052)
....+++.|+.-+.+ ..++..|..+|..++..... .-.++.|+..+....+ ..++..++..|..+....
T Consensus 396 -~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 396 -GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp -CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred -hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 234578888876654 56888888888887653211 1246667776644333 478888888887664211
Q ss_pred CCC-----CCChHhHHHHHHhhCCCCCcH-HHHHHHHHHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCC
Q 000146 789 GVS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGT 860 (2052)
Q Consensus 789 G~~-----~l~~k~li~~l~~~gL~~~n~-~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~ 860 (2052)
+.. .+-....++.+..+ |.+.+. .||.+|..+++.|.. ++.....+ .++-|.+.+.+......++.+..
T Consensus 475 ~~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 475 QDAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 110 00001235556666 777764 999999999999875 33333333 34566777777653322211000
Q ss_pred CCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhc-c-ccCCCCChhhHHHH
Q 000146 861 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGG 938 (2052)
Q Consensus 861 p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~-~~I~~~~~~eL~~a 938 (2052)
-+ .+.. + +. . +.....++..++..|..+.... + ..+.. ...++.
T Consensus 552 ~a----------------l~nq--~-------~~----~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~ 597 (780)
T 2z6g_A 552 MG----------------GTQQ--Q-------FV----E--GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPL 597 (780)
T ss_dssp ------------------------C-------CS----T--TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHH
T ss_pred hc----------------cccc--h-------hh----c--ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHH
Confidence 00 0000 0 00 0 0011234556666666654210 0 00100 235778
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
|...|.+.+..|+..|+.+|..++. .+.....+.. .++.++..+.+.+..||..|..+|..+....+
T Consensus 598 Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 598 FVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 8999999999999999999998862 2334443333 67889999999999999999999999887654
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.79 E-value=0.00037 Score=97.54 Aligned_cols=330 Identities=9% Similarity=0.055 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcc----ccc------hHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHHHHHHcCCCch
Q 000146 652 AVWKERLEAISSLRQQVEAVQ----NLD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~----~~~------~~~~~Lv~~L~~~pg~~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
.+|+.|-+|+-.+..+..... ... .-.+.++..+ .|.+.|. +..|...++.++..+.+.. ..
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQL---TK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhhC---CH
Confidence 589999999999987764321 000 1112223222 1344555 8889999998888777653 45
Q ss_pred hhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhC----------h-------hHHHHHHHHHHhhCCC---HH--HH
Q 000146 719 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG----------P-------GFIFERLYKIMKDHKN---PK--VL 774 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~----------~-------~~Vl~~L~~~l~~~Kn---pK--v~ 774 (2052)
..+..+++.++..+.|. .++..|..+|..+++... . ..+++.++..+ +..+ ++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 67888999999988884 579999999999988421 1 23444454443 2221 22 33
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hHhHHHH----HHhhCC-CCCcHHHHHHHHHHHHHHHHhhChh-hHhhhhhccHHHHHH
Q 000146 775 SEGILWMVSAVEDFGVSHLK-LKDLIDF----CKDTGL-QSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSA 847 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~-~k~li~~----l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkP~ll~~ 847 (2052)
...+..|..++..++....+ ...+++. +... . +..++..+..+..+++.+.+..|+. +..+.+.+-|.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~-~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 46667777777777654332 2233333 3332 2 3457889988999999999887764 344445555555554
Q ss_pred HHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHH--hhcCCCChHHHHHHHHHHHHHHHhccc
Q 000146 848 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEANK 925 (2052)
Q Consensus 848 Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll--~~l~d~~Wk~R~eale~L~~ll~~a~~ 925 (2052)
++..........-..-....+.. +.+++ ....+-+-++ ..+....|- -..+..|...+.....
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~~~ 714 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTDSS 714 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHHGG
T ss_pred HHhhhHhhHHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhChH
Confidence 43211000000000000000000 00111 0111222222 222222222 2344556666553323
Q ss_pred cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Q 000146 926 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWL 1003 (2052)
Q Consensus 926 ~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~~~llp~ll~~l~D~k-~~VR~aa~~aL~~i~ 1003 (2052)
.+.. ...++..+...+.+.+. -..++.+++.++..+|.. |.+|+..+++.++..+...+ ..++......+..++
T Consensus 715 ~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 715 IFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 3332 24566666666655432 378999999999999999 99999999999999987653 445545444444444
Q ss_pred HhcC
Q 000146 1004 AAVH 1007 (2052)
Q Consensus 1004 ~~~~ 1007 (2052)
-..+
T Consensus 791 ~~~~ 794 (960)
T 1wa5_C 791 NKLG 794 (960)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 3334
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.79 E-value=1e-05 Score=107.49 Aligned_cols=321 Identities=12% Similarity=0.101 Sum_probs=173.0
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhh---hH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVD---VF 168 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~---~v 168 (2052)
..-+++.+.+.+....-.++.=+..+ -..|.+......+++ |++. .+-..|..+.-.+..|.+. +++ -+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~~~~~vi-----k~~~s~~~~~Krl~Yl~~~~~~~~-~~e~~~l~ 108 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHFGQLECL-----KLIASQKFTDKRIGYLGAMLLLDE-RQDVHLLM 108 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGGGHHHHH-----HHHHSSSHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcchHHHHH-----HHHcCCchHHHHHHHHHHHHHhCC-CcHHHHHH
Confidence 33445555555544444444444333 223332222222343 3344 4666777665555555543 344 35
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHH
Q 000146 169 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILF 248 (2052)
Q Consensus 169 ~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~ 248 (2052)
+..|.+.+++.||-++..++.+|..+ |... -...+++.+.+++.|.++.||..|..++..+|+.. ++.+... +
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~-~ 181 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCM----GSSE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMF-L 181 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHH----CCHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGG-G
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhc----CCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHH-H
Confidence 67788899999999999998888764 3311 13567889999999999999999999999999865 3322111 0
Q ss_pred hhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccch
Q 000146 249 EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSG 328 (2052)
Q Consensus 249 ~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~ 328 (2052)
+.+.
T Consensus 182 ~~l~---------------------------------------------------------------------------- 185 (618)
T 1w63_A 182 PATK---------------------------------------------------------------------------- 185 (618)
T ss_dssp GGTT----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1100
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc-----------CcCHHHHHHHHHHHHHHHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT-----------DVNIAVAVEAIQAIGNLAR 393 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki---~~~dy~~l~~~L~k~l~-----------D~N~~V~~~A~~~l~~La~ 393 (2052)
+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+. ..+.-+....+++++.++.
T Consensus 186 --~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 186 --NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp --TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred --HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 001111112222333333333210 000 00011223333333221 2345555556667666654
Q ss_pred HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 394 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 394 ~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l---~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
.- +........++..++..+.-.+..-..-..+|+.+++.- .... ...++.+...+.++++.+|.-++..|..+.
T Consensus 264 ~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 264 ND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 21 111112223444444433221211122223344444432 1111 235566667788899999999999999988
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
...+. .+....+.+..|+.|.+..||..|.+++..+.
T Consensus 342 ~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 342 QTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred hhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 75432 23456678889999999999999988776543
No 39
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.67 E-value=7.6e-07 Score=120.77 Aligned_cols=293 Identities=12% Similarity=0.185 Sum_probs=213.5
Q ss_pred HHHHHHhhcC-C-ChhHHHHHHHHHHHHHhh----hhhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHH
Q 000146 134 CDAIAAKCLT-G-RPKTVEKAQAVFMLWVEL----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR 207 (2052)
Q Consensus 134 i~~LieK~L~-~-r~~tk~~A~~~~l~~~e~----~~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~ 207 (2052)
+..++.+ +. + ....++.|..+.-.+... .-+..+++.|.+++.+|+.- ++++..+..+.+.||... +..+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~-~~e~ 91 (986)
T 2iw3_A 16 LEELFQK-LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP-SVEP 91 (986)
T ss_dssp HHHHHHH-HTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-TTHH
T ss_pred HHHHHhh-ccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-Cccc
Confidence 3335555 43 2 444555554444443311 11347889999999887544 899999999998898732 2233
Q ss_pred ----HHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHh
Q 000146 208 ----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 283 (2052)
Q Consensus 208 ----il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~ 283 (2052)
+++.+...++|.++.||++|...+..|+..+.+.+++..| |.
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~-----~~----------------------------- 137 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL-----PH----------------------------- 137 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHH-----HH-----------------------------
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HH-----------------------------
Confidence 4577777888999999999999999999888654431111 11
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhc-ccCChHHHHHHHHHHHHHhc-CCCCCCCC
Q 000146 284 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV-KATKWSERKDAVAELTKLAS-TKRIAPGD 361 (2052)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l-~s~kWkeR~eaL~~L~~L~~-~~ki~~~d 361 (2052)
+++.+ .+.||+.+..||..+..++. .|......
T Consensus 138 ---------------------------------------------~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 138 ---------------------------------------------LTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp ---------------------------------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ---------------------------------------------HHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 11122 24589999999999999884 45444456
Q ss_pred hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----
Q 000146 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----- 436 (2052)
Q Consensus 362 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----- 436 (2052)
+.++++.+..++-|....|...|..++..+|..+++. -+..++|.|++.+.+... .-+|++.+....
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~---d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK---DIERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT---TTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCC
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeee
Confidence 7899999999999999999999999999999888753 344457888888877743 345666665431
Q ss_pred -CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHhh-cCCChHHHHHHHHHHHHHHH
Q 000146 437 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 437 -~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
..+|.-++|-|..+|+.+...+|+.+.-.+.++.+-. ++....++++.++|.+.+.. +-++|++|+.|.+|+.++.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 1236778899999999999999999999998876654 45566688999999999977 57899999999999999987
Q ss_pred HhCC
Q 000146 514 SVGM 517 (2052)
Q Consensus 514 ~~Ge 517 (2052)
+-+.
T Consensus 325 ~~~~ 328 (986)
T 2iw3_A 325 VGNV 328 (986)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 7664
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.67 E-value=3.3e-05 Score=103.27 Aligned_cols=467 Identities=13% Similarity=0.052 Sum_probs=273.4
Q ss_pred hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcC
Q 000146 402 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL------NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 402 ~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~------~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~ 474 (2052)
+....+|.|+..+++..+.|+..+..+|..+... .. ....+++.+...|.+. ++.+|..++..|..+.. ..
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 88 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Ch
Confidence 3445688999999999999999999999999875 11 1235678888888864 89999999998886433 22
Q ss_pred hhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000146 475 KAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 553 (2052)
Q Consensus 475 ~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~ 553 (2052)
. ...... ...+|.++.+|.+.++.||..|..+|..+.....+. +..+.+ . +
T Consensus 89 ~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-------------~~~v~~---~-g---------- 140 (644)
T 2z6h_A 89 E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRL---A-G---------- 140 (644)
T ss_dssp H-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-------------HHHHHH---T-T----------
T ss_pred h-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-------------HHHHHH---C-C----------
Confidence 1 111111 358899999999999999999999998887654321 011110 0 0
Q ss_pred ccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHH
Q 000146 554 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 633 (2052)
Q Consensus 554 ~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~ 633 (2052)
+
T Consensus 141 -------------------------------------------------------------------------------~ 141 (644)
T 2z6h_A 141 -------------------------------------------------------------------------------G 141 (644)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred HHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Q 000146 634 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 634 e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+.++..|.+.+|+.+..++..|..+.....+. ....+.|++++... ....+...++.++.
T Consensus 142 --------i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 142 --------LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLK 208 (644)
T ss_dssp --------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-----CCHHHHHHHHHHHH
T ss_pred --------hHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-----ChHHHHHHHHHHHH
Confidence 023445555566666666555555443211000 01133444444311 11222333333332
Q ss_pred HHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Q 000146 708 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 787 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~ 787 (2052)
.+.. +...+.. +.+. -+++.+++.+ .+.++.++..++..|..+...
T Consensus 209 nLs~----------------------~~~~~~~-------l~~~----g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 209 VLSV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHTT----------------------CTTHHHH-------HHHT----THHHHHHTTT-TCSCHHHHHHHHHHHHHHGGG
T ss_pred HHhc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhc
Confidence 2211 0111111 0110 1344445543 455777887777777776543
Q ss_pred hCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000146 788 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 867 (2052)
Q Consensus 788 fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~ 867 (2052)
. ......+.+++.+..+ +.+.++.||..|..++..|... ++..+. .+.+ . +
T Consensus 255 ~-~~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L~~~-~~~~~~-----------~v~~----~-g---------- 305 (644)
T 2z6h_A 255 A-TKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKM-----------MVCQ----V-G---------- 305 (644)
T ss_dssp C-TTCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTT-CHHHHH-----------HHHH----T-T----------
T ss_pred c-hhhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC-CHHHHH-----------HHHH----c-C----------
Confidence 2 2223346788888888 9999999999999999888542 111111 1100 0 0
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHhhcCC--CChHHHHHHHHHHHHHHHhcc--ccCCCCC-hhhHHHHHHhh
Q 000146 868 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES--PDWKVRLESIEAVNKILEEAN--KRIQPAG-TGELFGGLRGR 942 (2052)
Q Consensus 868 r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d--~~Wk~R~eale~L~~ll~~a~--~~I~~~~-~~eL~~aL~~r 942 (2052)
..+.|+..+.+ ..+.+|..|+..|..+..... ...+... -...++.|...
T Consensus 306 -------------------------~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 306 -------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360 (644)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH
Confidence 11233333332 237888888888887753100 0000000 02357788888
Q ss_pred hccch-HHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHHHHHHhCCC----------------------cHHHHHHHHH
Q 000146 943 LYDSN-KNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGDN----------------------KKHMRECTLT 997 (2052)
Q Consensus 943 L~DsN-~~V~~~Al~~l~~la~alg~~~~~~--~~~llp~ll~~l~D~----------------------k~~VR~aa~~ 997 (2052)
|.+.+ ..++..|+.+|+.|+.. ....+. -..++|.+++.+.+. ...|+.++..
T Consensus 361 L~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~ 438 (644)
T 2z6h_A 361 LHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 438 (644)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHH
Confidence 87764 68999999999988753 221111 234677777777653 3456677777
Q ss_pred HHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCC-ch--hhhHHHHHhhcCCCCHHHH
Q 000146 998 VLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDVR 1068 (2052)
Q Consensus 998 aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dVR 1068 (2052)
+|..++.... -...++.+...|.+. ++.++..++..|...... +... .+ ...+.+|...+.|.+++||
T Consensus 439 aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 439 ALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHH
Confidence 7775543211 123567788888765 577888888777764421 1100 00 1235668888999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 000146 1069 KAAEACIVEILRAGG 1083 (2052)
Q Consensus 1069 kaA~~~L~~l~~~~G 1083 (2052)
++|..+|..+...-+
T Consensus 516 ~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 516 TYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhccCc
Confidence 999999988766554
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.62 E-value=5.2e-05 Score=101.36 Aligned_cols=486 Identities=13% Similarity=0.061 Sum_probs=284.7
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC---
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 439 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~--- 439 (2052)
.+..|.+.+.+.+..|+..|+.+|+.|+..-.....-. ...+++.|+..+.+. .+.++..+..+|..+... ...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHH
Confidence 35666667778899999999999999997654221111 236789999999865 788999888888876542 000
Q ss_pred --HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 440 --LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 440 --l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
-...++.+...+++.++.++..++..|..+........ .... ...+|.++++|.+.++.++..+..+|..+.. +
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~ 170 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 170 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--c
Confidence 02467788888999999999999999999877643221 1122 4689999999999999999999999987764 3
Q ss_pred ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCC
Q 000146 517 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 596 (2052)
Q Consensus 517 e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~ 596 (2052)
.......+-.... -..+.+.+...
T Consensus 171 ~~~~~~~i~~~g~--v~~Lv~lL~~~------------------------------------------------------ 194 (644)
T 2z6h_A 171 NQESKLIILASGG--PQALVNIMRTY------------------------------------------------------ 194 (644)
T ss_dssp CHHHHHHHHHTTH--HHHHHHHHTTC------------------------------------------------------
T ss_pred CcHHHHHHHHcCC--hHHHHHHHHcC------------------------------------------------------
Confidence 2211111111000 01111111100
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc-CCHHHHHHHHHHHHHHHHhccccc
Q 000146 597 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 597 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.+++...+. .++..|.. ..-+.. ++..
T Consensus 195 --------------------------------~~~~~~~~a~-----~~L~nLs~~~~~~~~---------l~~~----- 223 (644)
T 2z6h_A 195 --------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPA---------IVEA----- 223 (644)
T ss_dssp --------------------------------CCHHHHHHHH-----HHHHHHTTCTTHHHH---------HHHT-----
T ss_pred --------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHH---------HHHC-----
Confidence 0011100000 11111111 111100 0000
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC
Q 000146 676 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 753 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~ 753 (2052)
.....|+.+ +.+.+..+...++.+|..+....... .....+++.|+.-+.+ ..++..+..+|..++....
T Consensus 224 g~l~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 224 GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp THHHHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 012233333 34456778888888888876553322 1234577888776654 5688888888888876321
Q ss_pred h-------hHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHhCCCC-----CChHhHHHHHHhhCCCCCc-HHHHHHHH
Q 000146 754 P-------GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATI 819 (2052)
Q Consensus 754 ~-------~~Vl~~L~~~l~~~K-npKv~~e~L~~L~~~i~~fG~~~-----l~~k~li~~l~~~gL~~~n-~~VR~aA~ 819 (2052)
. .-+++.|+..+.... .+.++..++..|..+....+... +-....++.+..+ |.+.+ +.||.+|.
T Consensus 296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~ 374 (644)
T 2z6h_A 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATV 374 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHH
Confidence 1 114666777664433 38899998888887753211100 0001346666676 88775 79999999
Q ss_pred HHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHH
Q 000146 820 KLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897 (2052)
Q Consensus 820 ~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~l 897 (2052)
.+++.|... +.....+ .+.-|.+.+.+.....+++.+..-+ -++ .+...
T Consensus 375 ~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a-----l~n----------~~~~~------------ 425 (644)
T 2z6h_A 375 GLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG-----GTQ----------QQFVE------------ 425 (644)
T ss_dssp HHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------CC------------
T ss_pred HHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc-----ccc----------chhcc------------
Confidence 999888653 3222222 4556777777766544443211000 000 00000
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh--
Q 000146 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-- 974 (2052)
Q Consensus 898 l~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~-- 974 (2052)
+..+..++..++..|..+.... ...... -...++.|...|.+.+..|+..|+.++..++.. +.....+.
T Consensus 426 ----~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~ 497 (644)
T 2z6h_A 426 ----GVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAE 497 (644)
T ss_dssp ----SSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHT
T ss_pred ----cccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHc
Confidence 0112345556666666554311 000000 134677888888999999999999999988742 33333222
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
..++.+...+.+.++.||.+|..+|..+....+
T Consensus 498 g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 498 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred CChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 246788899999999999999999998876543
No 42
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.56 E-value=0.00071 Score=94.74 Aligned_cols=333 Identities=11% Similarity=0.102 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh--------chhhhHHHHHHHHHHHhhh-----C---------h
Q 000146 697 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--------DIKTRAHAMKCLTTFSEAV-----G---------P 754 (2052)
Q Consensus 697 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--------d~K~r~~a~e~L~~l~E~~-----~---------~ 754 (2052)
.+...+.+++..++..+ .+..+..+++.+-..+. +-+.|+.|.-++..+++.. + .
T Consensus 376 s~R~aa~~~L~~l~~~~---~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKN---EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 35556666777776664 23445555665555444 2367899988899998642 1 1
Q ss_pred -hHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhC
Q 000146 755 -GFIFERLYKIMKDHK---NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 830 (2052)
Q Consensus 755 -~~Vl~~L~~~l~~~K---npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G 830 (2052)
.++...+++.+ .+. +|.+|..++..+++..+.+... ....+++.+... +.++++.||.+|..++..+-....
T Consensus 453 ~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~~--~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCHH--HHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCHH--HHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccc
Confidence 12334456655 444 9999999998888876654221 245677777665 899999999999999987765322
Q ss_pred -----------hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHh
Q 000146 831 -----------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 899 (2052)
Q Consensus 831 -----------~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~ 899 (2052)
..+.+|+.. +++.|-.-+++... .| .
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~----ll~~L~~ll~~~~~----~~-------------------------------~---- 565 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEI----LLKNLIALILKHGS----SP-------------------------------E---- 565 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHH----HHHHHHHHHHTTCC----CH-------------------------------H----
T ss_pred ccccccccccHHHhhhhHHH----HHHHHHHHHHhccC----CC-------------------------------C----
Confidence 223344433 33333333332210 00 0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-----cchHHHHHHHHHHHHHHHHHhCh-hhHHhh
Q 000146 900 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSS 973 (2052)
Q Consensus 900 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-----DsN~~V~~~Al~~l~~la~alg~-~~~~~~ 973 (2052)
+-.+...+++.+..++......+.|. +..++..|..++. ..|+.+...++++|+.++.+.++ .+.++.
T Consensus 566 -----~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 639 (960)
T 1wa5_C 566 -----KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639 (960)
T ss_dssp -----HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred -----cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 00011256777777777555666664 4677777666552 35778888899999999998664 577888
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-C----chhhHHHHH--HHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H----LDKMVPYVT--TALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~-~----l~~ll~~l~--~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
..++|.+...|..........+...+..++... + +..++|.+. ..++.. ..-..++..|..++......
T Consensus 640 ~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~ 715 (960)
T 1wa5_C 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELK----GNIPAVTRLLKSFIKTDSSI 715 (960)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT----TTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCC----CCchhHHHHHHHHHHhChHH
Confidence 899999988887666667777888888777664 2 234455444 333321 11123333444333221110
Q ss_pred -CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1047 -PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1047 -~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
..+..++..+..++.++.. +..|..++..+..++|.+.+.+++
T Consensus 716 ~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl 759 (960)
T 1wa5_C 716 FPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYI 759 (960)
T ss_dssp CSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred HHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHH
Confidence 0012233334556667664 378899999999999987677775
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.55 E-value=0.00016 Score=96.95 Aligned_cols=648 Identities=12% Similarity=0.068 Sum_probs=354.8
Q ss_pred ChhHHHHHHHHHHHHHhhhh--hhhHH-----HHHHHHhhccChhhHHHHHHHHHHHHHHhCC---CCc-----------
Q 000146 145 RPKTVEKAQAVFMLWVELEA--VDVFL-----DVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KII----------- 203 (2052)
Q Consensus 145 r~~tk~~A~~~~l~~~e~~~--~~~v~-----e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~---~~i----------- 203 (2052)
.+.+.-.|+.++..+++-.. ...++ +.+...+..++++++.++..++..++..+-. +..
T Consensus 63 ~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (810)
T 3now_A 63 DQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRN 142 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhh
Confidence 46666667666666655431 22333 3445667889999999888888877776542 221
Q ss_pred --ChHHHHhhhhhhhCCCC--hhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccC-----CCCCCc
Q 000146 204 --PPKRILKMLPELFDHQD--QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-----TARPTR 274 (2052)
Q Consensus 204 --~~k~il~~l~~ll~~~d--k~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~-----~~~p~R 274 (2052)
.++.++..|...+.+.. ...|+.+++++.--..+-..+........ + -..+-|+-. ..++. ..+.+-
T Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~-g~~~~l~v~-~~~~~~~~~~~~~~~~ 218 (810)
T 3now_A 143 NREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEI--R-GLCRLLDVC-SELEDYKYESAMDITG 218 (810)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHT--T-HHHHHHHHH-TCCSSSCCSSCCCCCT
T ss_pred hhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhH--h-hHHHHHHHH-hcCccccccccCCCCh
Confidence 25678888888888764 68999999998765532211111111111 1 111222211 11110 001111
Q ss_pred cchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCC---cccccCcCccchhh-hhcccCChHHHHHHHHHHHH
Q 000146 275 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD---PVDILTPLEKSGFW-EGVKATKWSERKDAVAELTK 350 (2052)
Q Consensus 275 ~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~---~vdIl~kl~~~~f~-~~l~s~kWkeR~eaL~~L~~ 350 (2052)
-+|.+..--... -||-+. .-+.+.++. ++|. .++....-..+..|...+..
T Consensus 219 ~~r~~~~~~l~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~alt~ 273 (810)
T 3now_A 219 SSSTIASVCLAR------------------------IYENMYYDEAKARFTDQI-DEYIKDKLLAPDMESKVRVTVAITA 273 (810)
T ss_dssp THHHHHHHHHHH------------------------HHHTCCSHHHHHHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH------------------------HHHHhccchhHHHHHHHH-HHHHHHHhccCChHhHHHHHHHHHH
Confidence 122221100000 010000 112222222 2333 34556667777888888887
Q ss_pred HhcCC-CCCCCCh--HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccCcHHHHHHHH
Q 000146 351 LASTK-RIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLT 426 (2052)
Q Consensus 351 L~~~~-ki~~~dy--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkK~~V~~aa~ 426 (2052)
+...+ ..-..-+ ...+..|...+...+..+...|+.+++.++.+ +....+ ...-+|.|...++.+...++..+.
T Consensus 274 i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al 351 (810)
T 3now_A 274 LLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRAL 351 (810)
T ss_dssp HHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHH
Confidence 76432 1111111 14567777888877888899999999998775 222222 222348888888888888988777
Q ss_pred HHHHHHHHhc--C--------CCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc
Q 000146 427 QTLQAMHKAG--C--------LNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 494 (2052)
Q Consensus 427 ~aL~ai~~~~--~--------~~l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~ 494 (2052)
.+|..+...+ . .++..+++.+...|.+. .+.+|..++..|..+-.......-...-..++|.|+.++.
T Consensus 352 ~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~ 431 (810)
T 3now_A 352 VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431 (810)
T ss_dssp HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC
Confidence 7777775321 0 11456777788888776 7899999999888754322111111111458899999998
Q ss_pred CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhh
Q 000146 495 DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 574 (2052)
Q Consensus 495 Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 574 (2052)
..++.+...|..+|+.+.. |.+. . ..+. .+.++.
T Consensus 432 s~d~~i~~~al~~L~NLt~--~~d~-q---~~~~-----~l~~la----------------------------------- 465 (810)
T 3now_A 432 GGNQSCLYGVVTTFVNLCN--AYEK-Q---EMLP-----EMIELA----------------------------------- 465 (810)
T ss_dssp TTCGGGHHHHHHHHHHHTT--CSCC-C---CCCC-----SCGGGT-----------------------------------
T ss_pred CCChHHHHHHHHHHHHHcC--Cchh-h---hhhH-----HHHHHH-----------------------------------
Confidence 8888888877777766654 3211 0 0000 000000
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHHhhhcCC
Q 000146 575 KSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAV 653 (2052)
Q Consensus 575 ~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~-ee~e~~~~~ll~~~l~~~L~s~~ 653 (2052)
+. ++. +. .+ +..... +...
T Consensus 466 ~~-----s~~-~v-----------------------------~~------~~~ld~~~~v~------------------- 485 (810)
T 3now_A 466 KF-----AKQ-HI-----------------------------PE------EHELDDVDFIN------------------- 485 (810)
T ss_dssp TT-----TCC-SC-----------------------------CC------SSCHHHHHHHH-------------------
T ss_pred HH-----hhc-cC-----------------------------cc------ccccccHHHHH-------------------
Confidence 00 000 00 00 000111 1111
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHh
Q 000146 654 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISER 731 (2052)
Q Consensus 654 Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveK 731 (2052)
.|.. .+++. .....|+..+. ..+..|+..+..+|..++.. ... +..+ .-++|.|+.-
T Consensus 486 --~r~~------~Vvea-----GaVp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d-~~~-r~~Vv~~Gaip~Lv~L 544 (810)
T 3now_A 486 --KRIT------VLANE-----GITTALCALAK------TESHNSQELIARVLNAVCGL-KEL-RGKVVQEGGVKALLRM 544 (810)
T ss_dssp --HHHH------HHHHT-----THHHHHHHHHT------CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHH
T ss_pred --HHHH------HHHHC-----cCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCC-HHH-HHHHHHCCCHHHHHHH
Confidence 1111 01111 12233444432 12344555555555555432 111 1111 1245555554
Q ss_pred h--hchhhhHHHHHHHHHHHhhhChhHH---------HHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---hCCCCCChHh
Q 000146 732 V--ADIKTRAHAMKCLTTFSEAVGPGFI---------FERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKD 797 (2052)
Q Consensus 732 l--gd~K~r~~a~e~L~~l~E~~~~~~V---------l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~---fG~~~l~~k~ 797 (2052)
+ ++.+.+..|..+|..++....++.+ ++.|+..+....+...+.+++..|..+... .....+. ..
T Consensus 545 L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG 623 (810)
T 3now_A 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQ 623 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Confidence 4 3456788888888888765555433 334444432223444556777777766531 0000000 12
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
.++.+..+ +.+.++.||.+|..+++.|.. ++.... . |.. +.
T Consensus 624 ~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~--~~~~~~-----------~----~v~--~~------------------- 664 (810)
T 3now_A 624 GVSKIEYY-LMEDHLYLTRAAAQCLCNLVM--SEDVIK-----------M----FEG--NN------------------- 664 (810)
T ss_dssp HHHHHHHH-HHSCCTTHHHHHHHHHHHHTT--SHHHHH-----------H----HHS--SS-------------------
T ss_pred CHHHHHHH-HcCCCHHHHHHHHHHHHHHhC--ChHHHH-----------H----HHh--cc-------------------
Confidence 34556666 788899999999999998864 332211 1 110 00
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLI 956 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~ 956 (2052)
+ ..+-|+..+.+.+-.+|++|.-.|..+.......++.-.- ...++.|...|.+.+..++..|+.
T Consensus 665 -------------g-~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 665 -------------D-RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp -------------S-HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred -------------C-cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 0 1235677788888999999999999888631111111000 346788888899999999999999
Q ss_pred HHHHHHHHhChhhHHhh--hHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHh
Q 000146 957 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDN---KKHMRECTLTVLDAWLAA 1005 (2052)
Q Consensus 957 ~l~~la~alg~~~~~~~--~~llp~ll~~l~D~---k~~VR~aa~~aL~~i~~~ 1005 (2052)
++..++.+ +.....++ ...++++...+.++ +..+++.|.++|..+.+.
T Consensus 731 aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 731 IILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999873 33333332 23778888888655 788999999999998764
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.55 E-value=1.3e-06 Score=99.27 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=114.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.|+..+.|.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..++.+.. .
T Consensus 53 ~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~ 111 (211)
T 3ltm_A 53 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------E 111 (211)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 456777788889999999888876521 4567778888889999999999988887631 2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..++.++..+.|..+.||..+..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~~ 177 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADALGEI-G-------GERVRA 177 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------SHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------chhHHH
Confidence 4567888888999999999988888776 4456778888888765 588898888888764 1 144556
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.+...+.|.++.||.+|..+|..+....+
T Consensus 178 ~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 178 AMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 67777888999999999988876654433
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.53 E-value=0.00034 Score=93.96 Aligned_cols=607 Identities=15% Similarity=0.126 Sum_probs=359.1
Q ss_pred ccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHH
Q 000146 334 KATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 407 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~----~~ki~~~dy~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 407 (2052)
.+.+=..|..|+..|.-|+. ..+|... +-+..|.+.+++ .|.-++..|++++..||++=+..-... ...=.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKD---HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhC---chHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 34555667778888776652 1222211 224566667774 889999999999999998764332222 22335
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cCC-----------------CHHHHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GCL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWV 466 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~--~~~-----------------~l~~ll~~l~~~L~~Kn--p~vR~~~l~~L 466 (2052)
|.++..+.-+...+..++..++.+++.. +.. .++.++..+...+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777777778888888888888875 110 14555666667777664 79999999999
Q ss_pred HHHHHhcChh---HHH--HhhhhHHHHHHHhhcCC--------ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 467 TFCIETSSKA---AVL--KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 467 ~~~l~~~~~~---~l~--~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
.+.+.+.... .+. ..++.++..... +.+. .+++|..+.-|+..++.-.+.+.-. +.-++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~-------~~~~~ 246 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK-------ARFTD 246 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH-------HHHHH
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhH-------HHHHH
Confidence 8887543211 111 233444442222 2232 6789999999999999888842211 11122
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhh-hhccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK-SAASM-LSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 611 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~s~-~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~ 611 (2052)
.+.+|+...-.. . .. . ..++. ++-+. +++
T Consensus 247 ~~~~~~~~~~~~---~--------------~~---~-~~~~a~~alt~i~~g---------------------------- 277 (810)
T 3now_A 247 QIDEYIKDKLLA---P--------------DM---E-SKVRVTVAITALLNG---------------------------- 277 (810)
T ss_dssp HHHHHHHHHHSS---C--------------CH---H-HHHHHHHHHHHHHSS----------------------------
T ss_pred HHHHHHHHHhcc---C--------------Ch---H-hHHHHHHHHHHHhcC----------------------------
Confidence 333333210000 0 00 0 00000 00000 000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHh
Q 000146 612 ETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVC 686 (2052)
Q Consensus 612 ~~s~~~~~~~~~~~~~~s~ee~e~~~-~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~Lv~~L~ 686 (2052)
..+...... .+-+-+.++..+.|.+-..+..|++.+.........-+ ...+.|+.+
T Consensus 278 -----------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L-- 338 (810)
T 3now_A 278 -----------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL-- 338 (810)
T ss_dssp -----------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH--
T ss_pred -----------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH--
Confidence 001111111 11112677889999999999999999887543311100 011233333
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhCh--
Q 000146 687 MLPGWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGP-- 754 (2052)
Q Consensus 687 ~~pg~~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~-- 754 (2052)
++..+..+...++-.|..+.... ..|....+..+++.++.-+.++ ..+..|.++|..++.....
T Consensus 339 ----l~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 339 ----YHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp ----TTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred ----HcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 33444556667777777776321 1233344566677777666554 4788888888887653211
Q ss_pred -----hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCC---------------CCC----------hH--------
Q 000146 755 -----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HLK----------LK-------- 796 (2052)
Q Consensus 755 -----~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~---------------~l~----------~k-------- 796 (2052)
.-+++.|+..+ ++.++.++.+++..|..+...+-.. .++ ++
T Consensus 415 ~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 415 KLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 12456666665 5678899999999999988633100 000 11
Q ss_pred -hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000146 797 -DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 875 (2052)
Q Consensus 797 -~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~ 875 (2052)
..++.+..+ +.+.++.||..|..++..|.. .+..+..+ -+ . +
T Consensus 494 aGaVp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~----~---G---------------- 536 (810)
T 3now_A 494 EGITTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ----E---G---------------- 536 (810)
T ss_dssp TTHHHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH----T---T----------------
T ss_pred CcCHHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH----C---C----------------
Confidence 244555666 788888999988888877752 11111111 11 0 0
Q ss_pred CCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccC-CCC-ChhhHHHHHHhhhc-cchHHHHH
Q 000146 876 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI-QPA-GTGELFGGLRGRLY-DSNKNLVM 952 (2052)
Q Consensus 876 ~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I-~~~-~~~eL~~aL~~rL~-DsN~~V~~ 952 (2052)
..+.|+..+.+.....|..|...|..++...++.+ .+. ...+.++.|...|. |.+.....
T Consensus 537 -----------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 537 -----------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp -----------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred -----------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 11345566666677789999999999987544322 111 11346778888885 33444556
Q ss_pred HHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcc
Q 000146 953 ATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 953 ~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~ 1024 (2052)
.|+.+|..|+..-...-...+ ...+|.++..+.+.+..|+.+|..+|..++..-. -...++.+...+.+.
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-- 677 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-- 677 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--
Confidence 788888888854211111222 2478999999999999999999999998874311 123567777777765
Q ss_pred ChhHHHHHHHHHHHHhccCCCC-Cc-h--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGF-PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~-~~-~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+..+|.+++..|...-...... .. + ...+++|+..|.+.+.+||+.|..++.-+..
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4778888886666543322210 11 1 3477789999999999999999999987765
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.53 E-value=1.9e-06 Score=97.21 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=106.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.++..+.|.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..++.+.. .
T Consensus 48 ~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~ 106 (201)
T 3ltj_A 48 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------E 106 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 356667777888888888887766421 3456777777888888888888888776531 2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..++.++..+.|..+.||.++..+|..+ +-...++.+...+.++ ++.+|..++..|... .....+.
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~--------~~~~~~~ 172 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADALGEI--------GGERVRA 172 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH--------CSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CchhHHH
Confidence 3567777788888888888888887765 3356677777777765 577888888877754 1234555
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
.+...+.|.++.||.+|..+|..+
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677777888888888888877654
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.53 E-value=0.00011 Score=95.36 Aligned_cols=480 Identities=13% Similarity=0.068 Sum_probs=271.0
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC--
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN-- 439 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~-- 439 (2052)
.++.|.+.+.+.+..++..|+.++..++..-... ... ....++.|+..+... .+.++..+..+|..+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 95 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHH
Confidence 5667777788889999999999999998643321 111 235789999988754 788898888888887532 000
Q ss_pred ---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 440 ---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 440 ---l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
-...++.+...+++.++.++..++..|..+....+...-.-.-...+|.+++++.+.+..+|..+..++..+.. +
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~ 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--C
Confidence 02357778888999999999999999999876543221100114588999999999999999999999986653 3
Q ss_pred ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCC
Q 000146 517 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 596 (2052)
Q Consensus 517 e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~ 596 (2052)
+......+-.-+. -..+.+.+...
T Consensus 174 ~~~~~~~i~~~~~--i~~L~~ll~~~------------------------------------------------------ 197 (529)
T 1jdh_A 174 NQESKLIILASGG--PQALVNIMRTY------------------------------------------------------ 197 (529)
T ss_dssp CHHHHHHHHHTTH--HHHHHHHHHHC------------------------------------------------------
T ss_pred CHHHHHHHHHCCC--HHHHHHHHHhC------------------------------------------------------
Confidence 2221111111000 01111111100
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh-cCCHHHHHHHHHHHHHHHHhccccc
Q 000146 597 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 597 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~-s~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.++....+. .++..|. +..-+.. ++..
T Consensus 198 --------------------------------~~~~~~~~a~-----~~L~~l~~~~~~~~~---------~~~~----- 226 (529)
T 1jdh_A 198 --------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPA---------IVEA----- 226 (529)
T ss_dssp --------------------------------CCHHHHHHHH-----HHHHHHTTSTTHHHH---------HHHT-----
T ss_pred --------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHH---------HHHC-----
Confidence 0000000000 0111111 1111100 0000
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC
Q 000146 676 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 753 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~ 753 (2052)
...+.|+.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 227 g~~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 227 GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp THHHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred CCHHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 112223332 345567788888888887776533221 234567888876654 5678888888887765321
Q ss_pred --h-----hHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhhCCCCCc-HHHHHHHH
Q 000146 754 --P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATI 819 (2052)
Q Consensus 754 --~-----~~Vl~~L~~~l~~-~KnpKv~~e~L~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~ 819 (2052)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATV 377 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHH
Confidence 0 1245666666543 345889999998888764311110 00001234556666 77776 69999999
Q ss_pred HHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHH
Q 000146 820 KLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897 (2052)
Q Consensus 820 ~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~l 897 (2052)
.+++.+-. ++.-...+ .++-|.+.+.+.....+++.+..- ... +. . +....
T Consensus 378 ~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~----~l~-n~----------~------~~~~~---- 430 (529)
T 1jdh_A 378 GLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM----GGT-QQ----------Q------FVEGV---- 430 (529)
T ss_dssp HHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTB----
T ss_pred HHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc----ccC-ch----------h------hhccc----
Confidence 99888864 33322322 355677777776654443221100 000 00 0 00000
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--
Q 000146 898 VKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-- 973 (2052)
Q Consensus 898 l~~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~-- 973 (2052)
..-..+..++..+..++.... ..+.. ...++.|...+.|.+..|+..|+.++..++.. +.....+
T Consensus 431 ------~~~~i~~~~~~al~~L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~ 499 (529)
T 1jdh_A 431 ------RMEEIVEGCTGALHILARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEA 499 (529)
T ss_dssp ------CHHHHHHHHHHHHHHHTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 011223344555554432100 00110 23567888889999999999999988887631 2222222
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAW 1002 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i 1002 (2052)
...++.+...+.+.++.|+..|..+|..+
T Consensus 500 ~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 500 EGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 13457788888888888988888887654
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.50 E-value=1.1e-05 Score=105.21 Aligned_cols=375 Identities=11% Similarity=0.114 Sum_probs=232.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccc--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
++++..+.|.+-..++.|+..+.+++..... .+ .....|+++|. .+.+..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 6788999999999999999999988754221 11 11344566653 345677888888888887753211
Q ss_pred CchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHHhhCC----CHHHHHHHHHHH
Q 000146 716 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 781 (2052)
Q Consensus 716 ~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~--~~~-----Vl~~L~~~l~~~K----npKv~~e~L~~L 781 (2052)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -+. ++..++..+.... ...+...+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1367888876655 4688999889988875321 111 2334444442221 122233333333
Q ss_pred HHHHHHhCCC-C-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 782 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 782 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|...... ....+. .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~------------~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE------------RIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH------------HHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh------------hHHHHH----h-----
Confidence 3333211111 1 1245678888888 9999999999998887766532110 000000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-~~~eL~~a 938 (2052)
..+.+.|+..+.+.++.++..++..|..++... ...... .-...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788899999999999999887421 110000 01234567
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 1009 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~-------- 1009 (2052)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....++..|..+|..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7788889999999999999999985432222222 2348999999999999999999999999888765432
Q ss_pred hhHHHHHHHHhcCccChhHHHHHHHHHHHHhccC---CCCCchhhhH------HHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~---~~~~~~~~ll------~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
.+++.|...|.++ ++.++..++..|...+... .....+..++ ..|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2466778888765 6888888888877665422 1111112221 2233345788999999988777554
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.49 E-value=0.00019 Score=92.93 Aligned_cols=386 Identities=12% Similarity=0.054 Sum_probs=216.9
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~ 476 (2052)
....+|.|+..+++..+.|++.+..+|..+..... ......++.+...|.+. ++.++..++..|..+... +.
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~- 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE- 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-
Confidence 45578999999999999999999999998875310 01135677788888754 899999999999885432 11
Q ss_pred HHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000146 477 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 555 (2052)
Q Consensus 477 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~ 555 (2052)
..... -...+|.++.++.+.++.||..|..+|+.+...-.+. +..+.+. +
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~--g-------------- 143 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRLA--G-------------- 143 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHH--T--------------
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------------HHHHHHc--C--------------
Confidence 11111 1358899999999999999999999998887653321 1111110 0
Q ss_pred CCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000146 556 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 635 (2052)
Q Consensus 556 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 635 (2052)
.
T Consensus 144 -----------------------------------------------------------------------------~-- 144 (529)
T 1jdh_A 144 -----------------------------------------------------------------------------G-- 144 (529)
T ss_dssp -----------------------------------------------------------------------------H--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred HhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000146 636 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 709 (2052)
Q Consensus 636 ~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 709 (2052)
-+.++..|.+.+|+.|..+...|..+.....+. ....+.|++++... ....+...+..++..+
T Consensus 145 ------i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 145 ------LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVL 213 (529)
T ss_dssp ------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHH
Confidence 023445555666776666665555433210000 00122333333210 0111111222222111
Q ss_pred HHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhC
Q 000146 710 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 789 (2052)
Q Consensus 710 ~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG 789 (2052)
.. ++..+.. +.+ .-+++.++..+ .+.++.++..++..|..+.....
T Consensus 214 ~~----------------------~~~~~~~-------~~~----~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 214 SV----------------------CSSNKPA-------IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp TT----------------------STTHHHH-------HHH----TTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hc----------------------CcccHHH-------HHH----CCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCCh
Confidence 10 1111111 111 01344455554 55678888888777777765432
Q ss_pred CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000146 790 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 869 (2052)
Q Consensus 790 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~ 869 (2052)
. ......+++.+..+ +.+.++.||..|..++..|... ++.....+ .+ ..
T Consensus 260 ~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~~----~~------------- 308 (529)
T 1jdh_A 260 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------CQ----VG------------- 308 (529)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------HH----TT-------------
T ss_pred h-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------HH----cC-------------
Confidence 2 22346788888888 9999999999999998888542 11111111 00 00
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHhhcC--CCChHHHHHHHHHHHHHHHhccccC---CCCC-hhhHHHHHHhhh
Q 000146 870 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRI---QPAG-TGELFGGLRGRL 943 (2052)
Q Consensus 870 ~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~--d~~Wk~R~eale~L~~ll~~a~~~I---~~~~-~~eL~~aL~~rL 943 (2052)
..+.++..+. +.+|.+|..++..|..+.... +.. +... -...++.|...|
T Consensus 309 -----------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 309 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTT
T ss_pred -----------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHh
Confidence 0123333333 235888888888888775321 100 0000 013467788888
Q ss_pred ccch-HHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000146 944 YDSN-KNLVMATLITLGAVASAMGPAVEKS-S-KGVLSDILKCLGDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 944 ~DsN-~~V~~~Al~~l~~la~alg~~~~~~-~-~~llp~ll~~l~D~k~~VR~aa~~aL~ 1000 (2052)
.+.+ ..++..++.+++.++. +...... . ..++|.+++.+.+....+|..+.-++.
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 422 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred ccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccC
Confidence 8776 5899999999999885 3332222 2 357899999998888778776655544
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.47 E-value=8.2e-06 Score=105.98 Aligned_cols=375 Identities=10% Similarity=0.108 Sum_probs=230.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcc--ccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~--~~~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
+++++.+.|.+-..++.|...+.+++.... +.+. ....|+++|. .+.+..++..+.-+|..++.....
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 678899999999999999999998875522 1111 1234555543 245677888888888887753211
Q ss_pred CchhhHH-HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHHhhC----CCHHHHHHHHHHH
Q 000146 716 FPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDH----KNPKVLSEGILWM 781 (2052)
Q Consensus 716 ~~~~~~~-~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~~-----Vl~~L~~~l~~~----KnpKv~~e~L~~L 781 (2052)
.....+. -.+|.|+.-+.+ ..++..|..+|..++..... +. .+..++..+... ....++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 1111121 267888887765 47899999999888753211 11 233444443211 1222333344444
Q ss_pred HHHHHHhCCC-C-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 782 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 782 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|..... ...+.+. .
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~~------------~~~~~i~----~----- 272 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN------------ERIEMVV----K----- 272 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCH------------HHHHHHH----T-----
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhchh------------hhHHHHH----h-----
Confidence 4433211111 1 1245678888888 999999999999888876643211 0000000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~a 938 (2052)
..+.+.|...+.+.++.++..++..|..++... ....... -...+..
T Consensus 273 -------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 273 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 320 (510)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHH
Confidence 002346777888899999999999998886421 1000000 0123455
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 1009 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~-------- 1009 (2052)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....+|..|..+|..+......+
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 6677888999999999999999875432222222 2358899999999999999999999999888765432
Q ss_pred hhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhH------HHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll------~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
..++.|...|.++ ++.++..++..|...+..... ...+..++ ..|-....+.|.+|++.|...+..+
T Consensus 401 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 401 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2466777888765 578888888887766643211 11112222 2233344778889998887776544
No 51
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.47 E-value=0.028 Score=79.40 Aligned_cols=318 Identities=10% Similarity=0.095 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 652 AVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~~~-~-~~~~~Lv~~L~~~pg~---~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
.+|+.|.+++-.+..+.+..... . .....++.+|...+.+ +|.+..|....+.++..+.+-+.. ....+..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 46888888777777554322111 1 1123344444322333 245555665677777655443211 1346778888
Q ss_pred HHHHhhhc--hhhhHHHHHHHHHHHhhhChhHH----------HHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCC-
Q 000146 727 GISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGV- 790 (2052)
Q Consensus 727 ~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~V----------l~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~- 790 (2052)
.+++.+.| .+++..|..+|..+++.++...+ ++.++..+ ...-..+......+.+..++...|.
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~ 623 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCH
Confidence 88888877 57999999999999998775443 55555543 2333455556666777777765552
Q ss_pred CCC--ChHh----HHHHHHhhCCC-------C-CcHH-HHH--HHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH---
Q 000146 791 SHL--KLKD----LIDFCKDTGLQ-------S-SAAA-TRN--ATIKLLGALHKFVGPDIKGFLADVKPALLSALDA--- 850 (2052)
Q Consensus 791 ~~l--~~k~----li~~l~~~gL~-------~-~n~~-VR~--aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~--- 850 (2052)
... -+.. ++..+... +. + .+++ ++. ....++..+...+|..+.+++..+-+..+..+..
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~ 702 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSS 702 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0111 22212111 11 0 1222 232 2244566667788888777665443333322221
Q ss_pred ----HHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhcccc
Q 000146 851 ----EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 926 (2052)
Q Consensus 851 ----efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~ 926 (2052)
.+... +++. . .-|-+.....+.+.++..+. .|..+...++. ++.
T Consensus 703 ~~~~~~~~~---g~~~----~---------------~~p~~~~~~~~~~~l~~ll~--~~~~~~~~l~~---~~~----- 750 (1049)
T 3m1i_C 703 MISAQVAAE---GLIA----T---------------KTPKVRGLRTIKKEILKLVE--TYISKARNLDD---VVK----- 750 (1049)
T ss_dssp HHHHHHHHH---CGGG----G---------------GSHHHHHHHHHHHHHHHHHH--HHHHHCSCHHH---HHH-----
T ss_pred HHHHHHHcc---Cchh----h---------------hhHHHHHHHHHHHHHHHHHH--HHHHhCCCHHH---HHH-----
Confidence 11110 0000 0 00000000111111111110 11111111111 010
Q ss_pred CCCCChhhHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-----C--CCcHHHHHHHHH
Q 000146 927 IQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-----G--DNKKHMRECTLT 997 (2052)
Q Consensus 927 I~~~~~~eL~~aL~~rL~D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-----~--D~k~~VR~aa~~ 997 (2052)
|. ..+++..+...+.. +.... ..++.+++.++..+|..+.+|+..++..++.+. + +..+.+|+....
T Consensus 751 --~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ 826 (1049)
T 3m1i_C 751 --VL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYK 826 (1049)
T ss_dssp --HT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHH
Confidence 00 12233333222211 11111 468899999999999999999998888888774 3 567889999999
Q ss_pred HHHHHHHhcC
Q 000146 998 VLDAWLAAVH 1007 (2052)
Q Consensus 998 aL~~i~~~~~ 1007 (2052)
.+..++.++.
T Consensus 827 ll~~i~~~~~ 836 (1049)
T 3m1i_C 827 LLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCH
Confidence 9999998875
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.45 E-value=3.4e-06 Score=95.81 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=138.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 894 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
.+.|+..+.+.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..|+.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578888999999999999999976521 4577888889999999999999999987641
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhH
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll 1053 (2052)
...++.++..|.|..+.||.++..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678889999999999999999998865 4456788899999876 689999999998864 1 13466
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000146 1054 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1110 (2052)
Q Consensus 1054 ~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~ 1110 (2052)
..+...+.|.++.||.+|..+|..+...-..+.+...+.+=++..+......+.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999987732222233444444445555565566665543
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.44 E-value=4.1e-06 Score=94.39 Aligned_cols=181 Identities=20% Similarity=0.169 Sum_probs=136.3
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
..+.+++.+.+.+|.+|..|+..|..+-. .+.+..|...|.|.+..|+..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999976521 356788888899999999999999988763 1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 973 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
...++.++..+.|..+.||..|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHHH
Confidence 24678889999999999999999998875 4456788889999876 689999999988864 1 1356
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhh
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
+..+...+.|.++.||..|..+|..+...-....+...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999877211111233333443344444444454443
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.42 E-value=0.00011 Score=95.53 Aligned_cols=380 Identities=13% Similarity=0.125 Sum_probs=237.1
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~d---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
++..+.+.|.+-..+.+|+..++++++..+-.+-+ =..+++.|...|+ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36778889999999999999999987532222200 1235778888887 6678899999999999997543322222
Q ss_pred hh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000146 403 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 470 (2052)
Q Consensus 403 ~~-~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~------ll~~l~~~L~~Kn-----p~vR~~~l~~L~~~l 470 (2052)
+. ..+|.|+..+++....|++.+..||..++.. +....+ .++.+...+...+ ..+...++..+..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4789999999999999999999999999864 222222 2455666665433 234444555555444
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 550 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~ 550 (2052)
.......-......++|.|.+++.+.+++|+..|+.++..+.. +.. ... ......
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~--~~~-----------~~~---~~i~~~--------- 273 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPN-----------ERI---EMVVKK--------- 273 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCH-----------HHH---HHHHTT---------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh--chh-----------hhH---HHHHhc---------
Confidence 3222211123346789999999999999999998888865542 111 011 111000
Q ss_pred CCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000146 551 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 630 (2052)
Q Consensus 551 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 630 (2052)
T Consensus 274 -------------------------------------------------------------------------------- 273 (510)
T 3ul1_B 274 -------------------------------------------------------------------------------- 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHH--HhcC-CCCcccHHHHHHHHHHHHH
Q 000146 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRL--VCML-PGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 631 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~--L~~~-pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+-+.++..|.+.++..+..++..|..++...+ .....++.. +... .-+.+.+..|...++-+|.
T Consensus 274 ---------g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 274 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ---------ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH---HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 001345667778888888888888876654321 112222221 1111 1245677788888888887
Q ss_pred HHHHHcCCCchhhH-HHHHHHHHHhhh--chhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHHhhCCCHHHHHH
Q 000146 708 YLAATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 776 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~-~~il~~LveKlg--d~K~r~~a~e~L~~l~E~~~~~~--------Vl~~L~~~l~~~KnpKv~~e 776 (2052)
.++........... ..++|.|+.-+. +.++|..|.-+|..++....++. +++.|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 76542111111111 236677777654 46788888888888877655443 245555554 7899999999
Q ss_pred HHHHHHHHHHHhCCCC-C-ChH------hHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 777 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 777 ~L~~L~~~i~~fG~~~-l-~~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
++..|..+++...... . ... ..++.+..+ ..|.|..|++.|..++-..|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999988875322110 0 111 134445555 67899999999988865544
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.40 E-value=0.00097 Score=88.41 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHH
Q 000146 772 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 851 (2052)
Q Consensus 772 Kv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~e 851 (2052)
-|.-+++..+..+ +...--.+..+..+..+ +.++++++|..|...+..+-...+. +. .
T Consensus 308 aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~-L~~~~~niry~aL~~l~~l~~~~~~----------~~-------~ 365 (621)
T 2vgl_A 308 AVLFEAISLIIHH----DSEPNLLVRACNQLGQF-LQHRETNLRYLALESMCTLASSEFS----------HE-------A 365 (621)
T ss_dssp HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHTTCTTT----------HH-------H
T ss_pred HHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhccCc----------HH-------H
Confidence 5566666555443 22110123455666677 8888999999998887766432210 00 0
Q ss_pred HhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC-CCChHHHHHHHHHHHHHHHhccccCCCC
Q 000146 852 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPA 930 (2052)
Q Consensus 852 feK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~-d~~Wk~R~eale~L~~ll~~a~~~I~~~ 930 (2052)
| ......++..+. |.+-.+|..+++.+..++.+.
T Consensus 366 ~--------------------------------------~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------- 400 (621)
T 2vgl_A 366 V--------------------------------------KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS------- 400 (621)
T ss_dssp H--------------------------------------HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------
T ss_pred H--------------------------------------HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-------
Confidence 0 011235666677 888889999999999887543
Q ss_pred ChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-
Q 000146 931 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L- 1008 (2052)
Q Consensus 931 ~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l- 1008 (2052)
...+++..|...+.+.+..++..++..|+.+|....+.+..|+..++ +.+.+....+.+.+...+..++...+ +
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~ 476 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQ 476 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHH
Confidence 25788888999998889999999999999999887777666655444 33333333455555556665555443 2
Q ss_pred hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhcc-CCCCCc--hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1009 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1009 ~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~-~~~~~~--~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
...+..+.+.+.+..... .=..+..|+.--+.. ....+. ..+.+..+...+.+.++.||..+-.++..+..+.++
T Consensus 477 ~~~~~~l~~~l~~~~~~~-~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 477 GYAAKTVFEALQAPACHE-NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHTSSSCCH-HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCccchH-HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 223445667776542111 111223364322211 111111 234566677778888999999999999888776653
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.38 E-value=0.00011 Score=95.81 Aligned_cols=376 Identities=13% Similarity=0.125 Sum_probs=232.8
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~d---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
++.+.+.+.+-..+.+|+..++++++..+-.+-+ -..+++.|.+.+. +.+..+...|+.+|..||.+-...-...
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888999999999999999987533222210 1246677888887 7789999999999999997543322212
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHhhcCC-----hHHHHHHHHHHHHHHH
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKV-----PLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~------ll~~l~~~L~~Kn-----p~vR~~~l~~L~~~l~ 471 (2052)
-...+|.|+..+......|++.+..||..++.. +....+ .++.+...+.... ..+...++..|..+..
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 234789999999999999999999999999864 212222 2445555565333 2334444444444433
Q ss_pred hcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCC
Q 000146 472 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 551 (2052)
Q Consensus 472 ~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~ 551 (2052)
......-......++|.|.+++.+.+++|+..|+.+|..+.. +... ....+ +..
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~--~~~~-----------~~~~v---~~~---------- 292 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPNE-----------RIEMV---VKK---------- 292 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHH-----------HHHHH---HTT----------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh--hhhh-----------hHHHH---Hhc----------
Confidence 222211123346789999999999999999988877765542 1110 01111 000
Q ss_pred CcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHH
Q 000146 552 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 631 (2052)
Q Consensus 552 ~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~e 631 (2052)
T Consensus 293 -------------------------------------------------------------------------------- 292 (529)
T 3tpo_A 293 -------------------------------------------------------------------------------- 292 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHH
Q 000146 632 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEV 705 (2052)
Q Consensus 632 e~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~ 705 (2052)
-+-+.++..|.+.++..+..++..|..++...+... .....|+.+ +.+.+..|...++-+
T Consensus 293 --------g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L------L~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 293 --------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL------LTNPKTNIQKEATWT 358 (529)
T ss_dssp --------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH------TTCSSHHHHHHHHHH
T ss_pred --------cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH------HcCCCHHHHHHHHHH
Confidence 001235566777788888888887776653311100 011223333 345566788888888
Q ss_pred HHHHHHHcCCCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHHhhCCCHHHH
Q 000146 706 INYLAATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 706 l~~l~~~~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~--------Vl~~L~~~l~~~KnpKv~ 774 (2052)
|..++........... ..++|.|+.-+.+ .+++..|.-+|..++....++. +++.|+..+ ..++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHHH
Confidence 8776643111111111 2366777766544 5788888888888877555442 244555554 78999999
Q ss_pred HHHHHHHHHHHHHhCCCC-C-ChHh------HHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 775 SEGILWMVSAVEDFGVSH-L-KLKD------LIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~-l-~~k~------li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
..++..|..++....... . .... .++.+..+ ..|.|..|++.|..++-..|
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 999999988875321110 0 1111 23445555 67999999999988865543
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.37 E-value=3.2e-05 Score=91.93 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 000146 725 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 802 (2052)
Q Consensus 725 l~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l 802 (2052)
++.|+..+.| ..+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 4666776766 357777777776654 344677777765 78899999988877644 453222345666766
Q ss_pred Hh-hCCCCCcHHHHHHHHHHHHHHHH
Q 000146 803 KD-TGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 803 ~~-~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
.. + +.+.++.||..|...++.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 53 4 788999999999999998864
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.35 E-value=0.00027 Score=93.71 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=119.7
Q ss_pred ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhc
Q 000146 337 KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK 415 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk 415 (2052)
+=.+|++++..|..+. .+.... .++..+.+.+...|..+...+--++..+++. -...+..++..+.+-+.
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d~s-----~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHDID-----FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCC-----SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcHHHHHHHHHHHHhcC
Confidence 4457888888876643 333222 2344444577888887777666666655432 12346677888899999
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh--hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh
Q 000146 416 EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV--KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 493 (2052)
Q Consensus 416 dkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L--~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 493 (2052)
++++.+|..|..+|..+... .-.+.+++.|...+ .|.+|.||..++..+.+++...+. .+ +. ..+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~~~--e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~-~~-~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSR--EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LV-PM-GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCH--HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GC-CC-CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hc-Cc-hhHHHHHHHHh
Confidence 99999998887777766321 22466778888899 899999999999999999986532 22 11 27889999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhC
Q 000146 494 NDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 494 ~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+|.++.|+.+|..++..+...-+
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCccHHHHHHHHHHHHHHhCh
Confidence 99999999999999988876543
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.32 E-value=0.00094 Score=94.37 Aligned_cols=389 Identities=12% Similarity=0.044 Sum_probs=225.6
Q ss_pred HHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh----hhH
Q 000146 96 FKKTVA-DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DVF 168 (2052)
Q Consensus 96 ~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~--~~----~~v 168 (2052)
+.+++. ..|..+...+|+|+..|+.-..... -....++..++++.+ +.+.++..|++|+..++... .. +..
T Consensus 199 ~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~ 276 (1049)
T 3m1i_C 199 CFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQ 276 (1049)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHH
Confidence 334443 3467788899999988876544211 011246666666654 37889999999999888652 11 111
Q ss_pred H----HHHHHHhhc-cC-----------------hhhHHHHHHHHHHHHHHhCCCC-----c--ChHHHHhhhhhhhCCC
Q 000146 169 L----DVMEKAIKN-KV-----------------AKAVVPAIDVMFQALSEFGAKI-----I--PPKRILKMLPELFDHQ 219 (2052)
Q Consensus 169 ~----e~Ll~~l~~-K~-----------------PKvv~~~l~~L~~~l~~FG~~~-----i--~~k~il~~l~~ll~~~ 219 (2052)
+ ..++..+.. -. ..........+..+++.+..-. . .+..+++.+..+..+.
T Consensus 277 ~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 277 TVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC
Confidence 1 111221111 11 1111122222222222211100 0 1334677777777888
Q ss_pred ChhHHHHHHHHHHHHHHhh--CCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCC
Q 000146 220 DQNVRASSKGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGP 297 (2052)
Q Consensus 220 dk~VR~~a~~l~vely~~l--G~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~ 297 (2052)
|..|+..+.++...+.+.+ .+. . ....++...+-+...+.++.- | + +.
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~--------e-------------d~- 406 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---P--------E-------------EV- 406 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---C--------T-------------TC-
T ss_pred cHHHHHHHHHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---C--------c-------------ce-
Confidence 9999999999888777643 111 1 122334433334444444310 0 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhc--
Q 000146 298 SEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLIT-- 374 (2052)
Q Consensus 298 ~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~-- 374 (2052)
+-. +.|+.+ ++ . .|. ..+..|..|+.+-+.|..++.. ... -..-+...|...+.
T Consensus 407 --~~~-----~dd~~e-----~~-r-----~~~--~d~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 407 --LVV-----ENDEGE-----IV-R-----EFV--KESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp --CEE-----ECTTSC-----EE-E-----CSS--CCHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSS
T ss_pred --eee-----eCCCCc-----ch-H-----hhh--ccchHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCC
Confidence 000 001100 00 0 111 1123477887777777666521 111 12334445555554
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHh---cCCCHHHHHH
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKL-----KEKKPTVAESLTQTLQAMHKA---GCLNLVDVVE 445 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~kl-----kdkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~ 445 (2052)
..+-+.+..|+.+++.++.++....+ ++...+++.++... ++.++.|+..+..++..+... ....+..+++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35677899999999999987765433 45777777776633 245666665565666544332 1123677888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC-
Q 000146 446 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM- 517 (2052)
Q Consensus 446 ~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge- 517 (2052)
.++.+|.+.++.|+..++..+.++.+.+..... .++++.++..+..++++-+.+-+....+|++.+....|.
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~ 623 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCH
Confidence 888899999999999999999999987764422 277889999999999988888888999999999999984
Q ss_pred hhHHHhHhhccHHHHHHHHHHH
Q 000146 518 RPLERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 518 ~~~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
....+++..|-+.-..++...+
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~ 645 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIV 645 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777776554444555443
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.27 E-value=3.9e-05 Score=91.14 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=116.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
+.|.+|.+|..++..|..+.... +....++++.|...+.|.+..|+..|+..++.+.. ...+|.+
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L 164 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLL 164 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHH
Confidence 57899999999999999886421 11125788999999999999999999999987643 2368899
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1060 (2052)
+..+.|..+.||..+..+|..+. ......++.+...|.++ ++.+|..++..|...- ....+..+...+
T Consensus 165 ~~~l~d~~~~vr~~a~~aL~~~~--~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l 232 (280)
T 1oyz_A 165 INLLKDPNGDVRNWAAFAININK--YDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK--------DKRVLSVLCDEL 232 (280)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHT--CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT--------CGGGHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhc--cCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC--------CHhhHHHHHHHh
Confidence 99999999999999999997762 22467788889999876 6899999998887531 245667788888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 000146 1061 TDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1061 ~D~~~dVRkaA~~~L~~l 1078 (2052)
.|.+ ||..|..+|..+
T Consensus 233 ~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 233 KKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp TSSS--CCHHHHHHHHHH
T ss_pred cCcc--HHHHHHHHHHhc
Confidence 8854 999998888765
No 61
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.16 E-value=0.0089 Score=83.32 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcC--cCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHHHHHHh
Q 000146 338 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKL 414 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~kl 414 (2052)
|+.=++.|..+..+... .-..-++..|.+.+.+ .+=..+..+|-|+|.++.++... ..+++..++|.|+..+
T Consensus 430 f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 54434666666554321 1123344555555553 56788999999999999998765 5689999999999887
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------H
Q 000146 415 K-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------L 479 (2052)
Q Consensus 415 k-----dkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~ 479 (2052)
. |.|..|++.+.-++..+... ....+..++..+..+|.+.+|.+...++..+..+.+.+..... .
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 5 56777777766666554433 1123678888888999888999999999999998887764322 3
Q ss_pred HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh-HHHhHhhccHHHHHHHHHHH
Q 000146 480 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 480 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~-~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
+++..++..+..++++-.+.-+....++++.+....|... ...+++.|-+.-..++++.+
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHH
Confidence 5788888889999999999999999999999999999654 55677776555555555554
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.13 E-value=1.5e-05 Score=90.21 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=136.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
-+...+.+.++..|.+|+..|..++... .....- -...++.|.+.+.+.+..|+..|+.+|+.|+.+-...-.. .-.
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4667788999999999999999987421 100000 0146778888999889999999999999998533221111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|+..+.+..+.|+..+..+|..+... ... . ..+++.+...+++.++.+|..++..|..+....+.. .
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-K 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-H
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-H
Confidence 5789999999999999999999999998753 111 1 235788888899999999999999999987643222 1
Q ss_pred HHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
... -...++.+..++.+.+++||..|..+|..+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 2358899999999999999999999998764
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.10 E-value=0.032 Score=77.60 Aligned_cols=297 Identities=8% Similarity=0.056 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHhhhChhHHHH----HHHHHHh------hCCCHHHHHHHHHHHHHHHHHhCCCC-------CChHhHH
Q 000146 737 TRAHAMKCLTTFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLI 799 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~~Vl~----~L~~~l~------~~KnpKv~~e~L~~L~~~i~~fG~~~-------l~~k~li 799 (2052)
.|.... .|...+...+++.++. .+...+. .+.+|+.+..+|..|..+-+.....+ -.+..++
T Consensus 414 ~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455555 7788888889888887 4433321 23568888888887776554222100 0123466
Q ss_pred HHHHhhCCC-----CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccC
Q 000146 800 DFCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 874 (2052)
Q Consensus 800 ~~l~~~gL~-----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~ 874 (2052)
+++..+ +. +.+|.||..+..+++..+.|+...- .++ |.
T Consensus 493 ~ll~~l-l~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l----~~------------------------------- 535 (980)
T 3ibv_A 493 QILALV-TTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI----PA------------------------------- 535 (980)
T ss_dssp HHHHHH-HHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH----HH-------------------------------
T ss_pred HHHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH----HH-------------------------------
Confidence 666554 43 7889999999999999998874210 000 00
Q ss_pred CCCCCCCCCCCcccccccccHHHHh--hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc----ch-
Q 000146 875 SVSSGGSDGLPREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN- 947 (2052)
Q Consensus 875 ~~~~~~~d~lpr~dIs~~i~~~ll~--~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D----sN- 947 (2052)
+...++. ++.+++-++|..|.-.+..+++.+.+.+.|. ..+++..|...|.- .+
T Consensus 536 ------------------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 536 ------------------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp ------------------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC
T ss_pred ------------------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCc
Confidence 1123344 4555666778888899999999877777765 47788888776641 00
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhCh---hhHHhhhHHHHHHHHHhC----CC----cHH-HHHHHHHHH
Q 000146 948 ----------------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DN----KKH-MRECTLTVL 999 (2052)
Q Consensus 948 ----------------~~V~~~Al~~l~~la~alg~---~~~~~~~~llp~ll~~l~----D~----k~~-VR~aa~~aL 999 (2052)
..=...-.+.+|.|+..++. .-..|+..+++++++.+. .. ... -......++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al 676 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAI 676 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred ccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHH
Confidence 11234466788888888773 344688888888776553 11 111 112345556
Q ss_pred HHHHHhcC------------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc-CC-CCH
Q 000146 1000 DAWLAAVH------------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TD-KSS 1065 (2052)
Q Consensus 1000 ~~i~~~~~------------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D-~~~ 1065 (2052)
+.+++-.. +..+++.+...|..=..+..+|..+..++.+.+...+. ++.+++++++..| .+ ...
T Consensus 677 ~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~ 754 (980)
T 3ibv_A 677 GNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMN 754 (980)
T ss_dssp HHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTT
T ss_pred HHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHH
Confidence 66665431 11233344445542111477888888888887766543 2344444444332 22 122
Q ss_pred HHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000146 1066 DVRKAAEACIVEILRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1066 dVRkaA~~~L~~l~~~~G~e~~~~~l~~L 1094 (2052)
+... .-..++.++..+|.+ +.+.+..|
T Consensus 755 e~~~-fL~l~~qli~~f~~~-~~~~l~~l 781 (980)
T 3ibv_A 755 ELVD-VLSFISQLIHIYKDN-MMEITNRM 781 (980)
T ss_dssp THHH-HHHHHHHHHHHTTTT-SHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2222 224666777777776 45454444
No 64
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.10 E-value=0.0085 Score=83.36 Aligned_cols=618 Identities=11% Similarity=0.065 Sum_probs=318.7
Q ss_pred hHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-hhh---hHH
Q 000146 94 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-AVD---VFL 169 (2052)
Q Consensus 94 ~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~-~~~---~v~ 169 (2052)
.++.++...+|..+..++|+|+..|+.-.....- ....+++.++ ++|+ .+.+|+.|.+|+..++... .++ .++
T Consensus 196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~-~~L~-~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWININLI-VNEPCMNLLY-SFLQ-IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHH-HCHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhh-hcchHHHHHH-HHcC-ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 3444454457888999999999999986543211 1135666666 6565 5899999999999887652 222 223
Q ss_pred HHH--HHHh---h--ccChhhH-------HHHHHHHHHHHHHhCCCC----------cChHHHHhhhhhhhCCCChhHHH
Q 000146 170 DVM--EKAI---K--NKVAKAV-------VPAIDVMFQALSEFGAKI----------IPPKRILKMLPELFDHQDQNVRA 225 (2052)
Q Consensus 170 e~L--l~~l---~--~K~PKvv-------~~~l~~L~~~l~~FG~~~----------i~~k~il~~l~~ll~~~dk~VR~ 225 (2052)
..| ...+ . +..+... .++...+..+ . -.... -.+..+++.+..+++|.+..|=.
T Consensus 273 ~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~-~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~ 350 (980)
T 3ibv_A 273 NILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-K-SDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETST 350 (980)
T ss_dssp HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-H-TSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-c-cCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 222 1111 1 1223322 2222222222 1 11100 11456888889999999998888
Q ss_pred HHHHHHHHHHHhh---CC-chhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCC
Q 000146 226 SSKGLTLELCRWI---GK-DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301 (2052)
Q Consensus 226 ~a~~l~vely~~l---G~-~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~ 301 (2052)
.+..+...+...+ .. ..+ .+..+|...+-++..+.++.-+ .+ .+.+
T Consensus 351 ~t~~Fw~~~l~~~~~~~~~~~~----~~~~~~~l~~Ll~~li~k~~yp--------------------~d---~~~~--- 400 (980)
T 3ibv_A 351 AVFPFLSDLLVSLRKESSSKEL----SASLKEFLKSLLEAIIKKMKYD--------------------ES---QEWD--- 400 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHHHHTTSCC--------------------TT---CCCC---
T ss_pred HHHHHHHHHHHHHHhccccccc----cHHHHHHHHHHHHHHHHHccCC--------------------Cc---cccc---
Confidence 8877754433322 10 001 0112334344444444443210 00 0000
Q ss_pred CCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---CcCH
Q 000146 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNI 378 (2052)
Q Consensus 302 ~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~---D~N~ 378 (2052)
+ +++.| | .++|.+ .+.+...+.....++........-|.-+...+...+. ..+=
T Consensus 401 --~-~~d~e--------d------~~~F~e------~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W 457 (980)
T 3ibv_A 401 --D-DPDSE--------E------EAEFQE------MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSW 457 (980)
T ss_dssp --C-CSSSS--------T------HHHHHH------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --c-ccchh--------H------HHHHHH------HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 0 00000 0 024422 3333333333333222100000011133344444452 3456
Q ss_pred HHHHHHHHHHHHHHHHhhhc------chhhhhhHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHh---cCCCHHHHH
Q 000146 379 AVAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVV 444 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klk-----dkK~~V~~aa~~aL~ai~~~---~~~~l~~ll 444 (2052)
+.+..|+-+++.++++++.. ..++...+++-|...+. +..+.|+-.+..++...... ....++.++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 67899999999999998742 22455566666665544 78899999888888776554 124478888
Q ss_pred HHHHH--HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCC----C-----------------hHHH
Q 000146 445 EDVKT--SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG----T-----------------PEVR 501 (2052)
Q Consensus 445 ~~l~~--~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds----~-----------------~~VR 501 (2052)
+.++. ++.|.++.||..+...+.++.+.+.+. +.++++.|+..+..++.-. . .+-+
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 616 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQ 616 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHH
Confidence 88888 888999999999999999999887653 5566677777776666511 1 1134
Q ss_pred HHHHHHHHHHHHHhCC--hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh--h
Q 000146 502 DAAFSVLAAIAKSVGM--RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS--A 577 (2052)
Q Consensus 502 ~aA~~~l~~l~~~~Ge--~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~ 577 (2052)
-.-++++|.+....+. +....++..|-+--..+++..+...... ... . ..+-.. .
T Consensus 617 l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~-------------------~~~-~-~~i~~~i~a 675 (980)
T 3ibv_A 617 LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA-------------------LEN-I-ISVYCSLMA 675 (980)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------------CH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC-------------------ccH-H-HHHHHHHHH
Confidence 4578888888888763 2234566666555556666666431100 000 0 000000 0
Q ss_pred ccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh--cCCH
Q 000146 578 ASMLS-GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK--SAVW 654 (2052)
Q Consensus 578 ~s~~~-~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~--s~~W 654 (2052)
-+..+ |-+.. + . + ..+ ..+... .+. +.+...|. .++.
T Consensus 676 l~~lakgf~~~-------------~-----------~-~-------~~p---~~~~f~-~~~----~~il~~l~~~~~~~ 715 (980)
T 3ibv_A 676 IGNFAKGFPAR-------------G-----------S-E-------EVA---WLASFN-KAS----DEIFLILDRMGFNE 715 (980)
T ss_dssp HHHHHHTSCSC-------------C-------------C-------CCS---HHHHHH-HHH----HHHHHHHHHSCCSH
T ss_pred HHHHhccCCcc-------------c-----------C-C-------CCc---HHHHHH-HHH----HHHHHHHHhcCCcH
Confidence 00000 00000 0 0 0 001 112121 111 12223333 4678
Q ss_pred HHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh
Q 000146 655 KERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 655 k~Rl~ale~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 733 (2052)
..|-++..-+..++...+. ..+...-++..+.. +-...-+...|.++..++..++.-....+..+++.++.++.
T Consensus 716 ~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if 790 (980)
T 3ibv_A 716 DIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIF 790 (980)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765322 11222333333321 11122355677777778877765445556677777777653
Q ss_pred ch-----------h----hhHHHHHHHHHHHhhh-C-----------hhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q 000146 734 DI-----------K----TRAHAMKCLTTFSEAV-G-----------PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 786 (2052)
Q Consensus 734 d~-----------K----~r~~a~e~L~~l~E~~-~-----------~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~ 786 (2052)
.. + ++..-...|..+..+. + .+.++..++.++.+..++-++.-|+..|.++++
T Consensus 791 ~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~ 870 (980)
T 3ibv_A 791 SSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVS 870 (980)
T ss_dssp HHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 31 1 2222233444444421 1 224566666665566888899999999999999
Q ss_pred HhCCCC-CC------hHhHHHHHHhh----CCCCCcH---HHHHHHHHHHHHHHHhhChhhHhhh
Q 000146 787 DFGVSH-LK------LKDLIDFCKDT----GLQSSAA---ATRNATIKLLGALHKFVGPDIKGFL 837 (2052)
Q Consensus 787 ~fG~~~-l~------~k~li~~l~~~----gL~~~n~---~VR~aA~~ll~~Ly~~~G~~l~~~L 837 (2052)
.+|... ++ ++ +++.+-.. .+.-.|+ .|=.....++.++|...|+.+..||
T Consensus 871 ~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 871 LWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp C-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 997432 22 23 33332211 1222233 3566677788888988898877776
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.01 E-value=2e-05 Score=91.86 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=137.1
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcC-CC-CCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLAST-KR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 403 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~k-i~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 403 (2052)
+.|.+.+.+.+...|..|+..|..++.. .. ...---..+++.|.+.+.+.+..++..|+.+|+.++.+-...-... -
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3688899999999999999999875532 00 0000012367788888998889999999999999986432221222 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 404 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
...+|.|+..+++..+.|+..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... +.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999988754 221 136788888999999999999999999876533 22
Q ss_pred HHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 477 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 477 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
..... -..++|.++.++.+.++.||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 22111 1458899999999999999999999998876
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.92 E-value=0.00056 Score=73.00 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=146.6
Q ss_pred hhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 331 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
.-+.+.-|..++.|+.-+..++.. .+.-|..++..|.-.+. +.-+..-.+-..++|.+|..= + ..++.++|.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P---e~v~~vVp~ 111 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P---ELVKSMIPV 111 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H---HHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H---HHHHhhHHH
Confidence 345778899999999999888753 23346677777777766 777777777778888887532 2 257889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 489 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 489 (2052)
|+..+.--.+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=.++ .+|...++|-+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLprL 186 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPRI 186 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHHH
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHHH
Confidence 9999877777778888889999998733446788999999999999999999999988743332 24556778899
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCC--hhHHHhHhhcc---HHHHHHHHHHHh
Q 000146 490 MECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 540 (2052)
Q Consensus 490 ~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge--~~~~~~l~~Ld---~~k~kkI~e~~~ 540 (2052)
..+|.|.+.-||..|.++++.+...-.. +.+..-+..++ +.-++++++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999988754321 12233334443 345666766654
No 67
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.87 E-value=0.0001 Score=85.29 Aligned_cols=189 Identities=17% Similarity=0.121 Sum_probs=140.0
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.+...|..++..|..++.. +.....- -...++.|...+.+.+..++..|+.+|+.|+..-...... .-.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 456667788899999999999998743 1110000 1135778888889999999999999999998532221111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999998753 1111 236788888999999999999999999876532 2222
Q ss_pred HHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 479 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 479 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
.... ..+++.+..++.+.+++||..|..+++.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1221 457899999999999999999999999998876643
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.85 E-value=0.00011 Score=84.99 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=136.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.++..|..|+..|..++.... .... --..+++.|.+.+.+.+..|+..|+.+|+.++..-...-.. .-.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 46677888889999999999999875321 0000 00246788888999889999999999999998642211111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|+..+++..+.|+..+..+|..+... .... ..+++.|...+++.++.++..++..|..+....+ ...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 5799999999999999999999999999743 1111 1467888889999999999999999998765332 211
Q ss_pred HH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 479 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 479 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.. .-..++|.+..++.+.+++||..|..+++.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 124589999999999999999999999988874
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.84 E-value=6e-05 Score=85.21 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=133.3
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 894 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
++-|...+.+.++.+|.+|+..|..+.... ....... -...++.|...|.+.+..++..|+.+|+.++..-.......
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 456778889999999999999999987421 1110000 12477889999999999999999999999874322221222
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
. ...+|.++..|.+.++.+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 2 3478999999999999999999999999875321 123678888888875 68899999988887654322
Q ss_pred CCC-c--hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1045 GFP-D--AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1045 ~~~-~--~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
... . ....+..++..+.+.+.+||+.|..+|..+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 110 1 1235666888999999999999999987664
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.80 E-value=5.1e-05 Score=88.32 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=136.0
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.++..|..|+..|..++.. +.....- -...++.|...+.+.+..|+..|+.+|+.|+..-...... ...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466667888899999999999988742 1110000 0136778888899889999999999999998654333122 233
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.++|.|+..+.+..+.|+..+..+|..+... ... . ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999999999998753 111 1 235677888899999999999999999876433 2222
Q ss_pred HHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.... ..+++.+..++.+.+++||..|..+|+.+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 2222 348899999999999999999999998664
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.0014 Score=70.00 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=122.5
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
.+.++++..+.|.-|.+|++|+.-+-.++.. -|..+..+..-|...+ ++--..+-+.-.+.+|.++..-.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---- 102 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---- 102 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----
Confidence 3556788889999999999999999888753 1222233333333333 23233333444455555553321
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC--C
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--F 1046 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--~ 1046 (2052)
..++.++|.++..+.-..+.+|=-...+|..++...+ +..++..+...|.++ |-.-|..++.|+.. ++. .
T Consensus 103 e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~a----lGen~~ 176 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIEA----MGENSF 176 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHT----CCTTTH
T ss_pred HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH----HhccCc
Confidence 3577889999999988888888888899999999876 455666777777765 56678999998873 222 1
Q ss_pred CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1047 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
..+.++++-++..|.|+|.-||..|.++|..+...
T Consensus 177 ~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 24567777799999999999999999999766543
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.50 E-value=0.0019 Score=72.30 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=145.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.++..+.++|-.++..++..+++++..+++....-.+.++++.+...+.+.|-.|...|++|++.+.....-.=+.| ..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 46677899999999999999999998764444444568899999999999999999999999999998766554444 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
+.-++.....+++..++..+.+.++.+ ..+. ...++..+...+.++ +++++...+..+.........+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 677888888999999999999999998 4333 577888889989655 799999999998875554444445667777
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
.+-..|...++.+++.|-.++..+.
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888888889999999988776554
No 73
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.42 E-value=0.00082 Score=80.55 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcCcCHHHHHHHHHHHHHHHHHhhhcchhhh--hhHHHHHHHH
Q 000146 339 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 413 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 413 (2052)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++..-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46888899888877431100 011 123456666 8888999999999999999986421 122221 2578999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhH
Q 000146 414 LKE-KKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDY 485 (2052)
Q Consensus 414 lkd-kK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l 485 (2052)
++. .+..|+..+.-||..++.+ ... . ...++.|...|++.++.+|..++..|..+....+ ....... ..+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCC
Confidence 984 5889999999999999864 111 1 1356677788899999999999999998776532 2222222 348
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+|.|+.+|...++.||+.|..+++.|...
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 89999999999999999999999988755
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.27 E-value=0.0044 Score=69.33 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=139.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++.+.+.+++=+.-..|+..|..|+.+-.+.+.+|.-+..+|...+++.|..+...|+..+|.+ ......+.++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 5666667777777778899999988766688889999999999999999999999998888877 2233456677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~--~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
..++..++.++..|..++..++..+..++ ...+..++..|...+++++|.++.-++..+.+++...-...+.+.+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 77777778899999999999999998761 1238899999999999999999999999999988764333333333444
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHHHH
Q 000146 486 VPICMECL-NDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 486 ~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
...+..+. -...|.+|+.|+.....+-.
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 44444444 58889999999877665543
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.97 E-value=0.004 Score=74.54 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHh-hhccchHHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHH
Q 000146 907 KVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDI 980 (2052)
Q Consensus 907 k~R~eale~L~~ll~~---a~~~I~~~~~~eL~~aL~~-rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~l 980 (2052)
..|..|++.|..+++. ++.... .| .++.|.. .|...+..|+..|+.+|+.++.. .+.+...+- ..+|.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~---~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ---LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH---TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH---cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 4688999999998862 111111 13 3456677 88899999999999999999853 233333322 588999
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC-Cch--
Q 000146 981 LKCLG-DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA-- 1049 (2052)
Q Consensus 981 l~~l~-D~k~~VR~aa~~aL~~i~~~~~l-------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~-~~~-- 1049 (2052)
+..|. +.+..+|..|..||..++..... ...+|.|...|.++ ++.+|..++..|.......... ..+
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99998 46889999999999998864321 23567888888875 5888998887777655442211 111
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1050 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1050 ~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
...+++++..|.+.+.+||..|..+|..+...
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 24677799999999999999999999988876
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.94 E-value=0.52 Score=61.28 Aligned_cols=376 Identities=13% Similarity=0.054 Sum_probs=205.1
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhh---hhh-
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVEL---EAV- 165 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~--~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~---~~~- 165 (2052)
.+.+-+++...|..+|..|..+|..+...... .... -...|+.||+- |. ..+.+++.|..++..+... +.-
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 45556688889999999999888766533222 1111 12467888877 65 6889999999999888753 111
Q ss_pred ----hhHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhh------------------CCCChh
Q 000146 166 ----DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQN 222 (2052)
Q Consensus 166 ----~~v~e~Ll~~l~~-K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll------------------~~~dk~ 222 (2052)
...++.|+..+.. ..+.++..+..+|..+-..--.+..=.+.-++.|..++ ...|..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 2356667777775 56667777666665543211111000112234444433 234679
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHH--hhChHHHHHHHHHHHHhccCCCCCC----ccchhhhhHhhhhcccccCCCCC
Q 000146 223 VRASSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPT----RKIRAEQDKELGQELISEDVGPG 296 (2052)
Q Consensus 223 VR~~a~~l~vely~~lG~~~l~~~L~--~~Lkp~qlkeLe~~f~~~~~~~~p~----R~~rs~~~~~~~~~~~~~~~~~~ 296 (2052)
|+..|..++..|...- ++ .+..+. ..+-+..+.-|.....+......-. ..+|.-.. .... +..
T Consensus 208 V~~nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~-~~~~----e~~--- 277 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY-QVHR----EIP--- 277 (584)
T ss_dssp HHHHHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT-THHH----HST---
T ss_pred HHHHHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc-cccc----ccc---
Confidence 9999999988876421 11 122221 2333333444433222111000000 00000000 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhc-
Q 000146 297 PSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLIT- 374 (2052)
Q Consensus 297 ~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~- 374 (2052)
..+.| .+. .+ . +........++-... --..+++.|..++.
T Consensus 278 -----------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 278 -----------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp -----------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred -----------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 00011 000 00 0 000001111111110 11356777888886
Q ss_pred CcCHHHHHHHHHHHHHHHHHhh---hcchhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHH
Q 000146 375 DVNIAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVV 444 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll 444 (2052)
..+..+...|+-+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..||.++... ... ...+
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~i 397 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAI 397 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCH
Confidence 5688999999999999986431 1222222 35699999999999999999999999999875 232 2345
Q ss_pred HHHHHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHH
Q 000146 445 EDVKTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 445 ~~l~~~L~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds--~~~VR~aA~~~l~~l~~ 513 (2052)
+.|..-|.+. +..+...++..|..++...+.. ..... ...+|.|+.++.+. .+.++++|..+|..++
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~- 475 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW- 475 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH-
Confidence 6666666654 3467778888888777543322 11222 34889999999876 7788777777776554
Q ss_pred HhCChhHHHhH
Q 000146 514 SVGMRPLERSI 524 (2052)
Q Consensus 514 ~~Ge~~~~~~l 524 (2052)
.++.+...+
T Consensus 476 --~~~elr~~~ 484 (584)
T 3l6x_A 476 --GYKELRKPL 484 (584)
T ss_dssp --TSHHHHHHH
T ss_pred --cCHHHHHHH
Confidence 555444443
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.84 E-value=0.00014 Score=76.18 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 442 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ 442 (2052)
..-...|...++|.+..|+..|+.+++.+. . + -++.|++.++|..+.||..+..+|..+. -..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----D---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQ------DER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----S---T----THHHHHHGGGCSCHHHHHHHHHHHGGGC------SHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcC------CHH
Confidence 344566777788888888888877766442 1 1 1488888899999999988777765442 246
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 443 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 443 ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
.++.|...+++.+|.||..++..|..+- . +..++.|.+++.|.++.||.+|..+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 6788888889999999999999888642 1 3457888899999999999999998864
No 78
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.83 E-value=3.6 Score=57.41 Aligned_cols=141 Identities=6% Similarity=0.072 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-----cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-----DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
.+|+.|..++=.++.|............+..+++.|...+. |.+..|+..++-++|..+.-+..+ ..|++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 58999999999999987521111011113556666666554 566667778889999988877433 457888999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hhhHHHHHHHHhc--CccChhHHHHHHHHHHHHhccCCC
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DKMVPYVTTALTD--AKLGAEGRKDLFDWLSKQLTGLSG 1045 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----------~~ll~~l~~~L~~--~k~np~~R~~~l~~L~~~l~~~~~ 1045 (2052)
.+++.+.|.++.|..+|..|+..+++.|+- ..+++.+...+.. .+..+..+..+.+.+...+...+.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998862 1245544443331 123466677788888877776653
No 79
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.70 E-value=3.9 Score=56.99 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHhccC-----cHHHHHHHHHHHHH---H
Q 000146 364 EVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---M 432 (2052)
Q Consensus 364 ~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----K~~V~~aa~~aL~a---i 432 (2052)
-++..|.+.+. ..+-+....+|=++|.+|..+....+ ++...+++.|+.....+ |+.|+....=++.. |
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 34555665555 34577888899999999987876554 78889999998776433 55565544333332 2
Q ss_pred HHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH-------HHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 433 HKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 433 ~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~-------l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
......-++.++..|..++.+.++.|...++..+..+.+.|...- ..+++..++..+..+..+=.++-.-.-.
T Consensus 557 l~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ly 636 (1073)
T 3gjx_A 557 LRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFY 636 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 222112367888888999999999999999999988888776532 1246777777778888888888888889
Q ss_pred HHHHHHHHHhCChh-HHHhHhhccHHHHHHHHHHH
Q 000146 506 SVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 506 ~~l~~l~~~~Ge~~-~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
+|++.+....|... ...++..|=+.--.+..+.+
T Consensus 637 eav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 637 EAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998643 45566665444444444444
No 80
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.65 E-value=5.2 Score=56.98 Aligned_cols=381 Identities=12% Similarity=0.047 Sum_probs=194.7
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHHHhhhC-hh-------HH----HHHHHHHHhhCC--C-HHHHHHHHHHHHHHHHHh
Q 000146 724 CLLGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHK--N-PKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 724 il~~LveKlgd~K~r~~a~e~L~~l~E~~~-~~-------~V----l~~L~~~l~~~K--n-pKv~~e~L~~L~~~i~~f 788 (2052)
+++.++.-+.++.+|..|.+||..++.... ++ .+ +..++..+.... . ...-.+.+..+++++..+
T Consensus 250 ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~l 329 (1204)
T 3a6p_A 250 LLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAL 329 (1204)
T ss_dssp HHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 566666667788899999999999987542 21 00 223443321010 0 111223334444444443
Q ss_pred C-------------CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 789 G-------------VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 789 G-------------~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
| ...-.+..+++.+..+ +.|++..|-..+...-..+.+.....-...+...-+.++..+...+.|+
T Consensus 330 g~~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~ 408 (1204)
T 3a6p_A 330 GNQLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKM 408 (1204)
T ss_dssp HHHHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3 1122466788888887 8898888887777766656555321111122233344444444446777
Q ss_pred CCCCCCC-CccccccccccCCCCC--C--------CCCC------CCcccccccccHHHHhhcC----------------
Q 000146 856 PFEGTVV-PKKTVRASESTSSVSS--G--------GSDG------LPREDISGKFTPTLVKSLE---------------- 902 (2052)
Q Consensus 856 ~~~~~p~-p~r~~r~~~~~~~~~~--~--------~~d~------lpr~dIs~~i~~~ll~~l~---------------- 902 (2052)
.+..... |....- ..+.....+ . ..|. +-+.+....+.+-+...+.
T Consensus 409 ~yp~~~~~~~~~~~-~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~ 487 (1204)
T 3a6p_A 409 GFPSKTDSPSCEYS-RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGT 487 (1204)
T ss_dssp CCSSCCSSTHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC--------------
T ss_pred cCccccCCcchhhh-hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 5511000 000000 000000000 0 0000 0000011001111111111
Q ss_pred ---------CCChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHhChhh
Q 000146 903 ---------SPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 903 ---------d~~Wk~R~eale~L~~ll~~a~~~I-~~~~~~eL~~aL~~rL---~DsN~~V~~~Al~~l~~la~alg~~~ 969 (2052)
+..|..+......++.++....... .+.....++..|...+ ...+..++..++.+++.+..-....
T Consensus 488 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~- 566 (1204)
T 3a6p_A 488 GEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR- 566 (1204)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-
Confidence 2357776665556666655421111 1222123344444432 3457789999999998777654422
Q ss_pred HHhhhHHHHHHHHHhCC------------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCc-cChhHHH
Q 000146 970 EKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAK-LGAEGRK 1030 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D------------~k~~VR~aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~k-~np~~R~ 1030 (2052)
..|+..++..|+..+.+ ..+.||.+|..++..++..++ + +.+...+...+.... .....+.
T Consensus 567 p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~ 646 (1204)
T 3a6p_A 567 PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKC 646 (1204)
T ss_dssp GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHH
T ss_pred chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHH
Confidence 25677777777777766 456899999999999999885 2 333334444454333 3455566
Q ss_pred HHHHHHHHHhccCCCC---Cc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H----
Q 000146 1031 DLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A---- 1100 (2052)
Q Consensus 1031 ~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~--~---- 1100 (2052)
.+.+.+...-...+.. .. +..++.|++..+.+ ++++.+ ......|+..+|-+....+....++..+ .
T Consensus 647 ~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~~-~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~ 723 (1204)
T 3a6p_A 647 ALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS--QDMHRV-LSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSF 723 (1204)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC--HHHHHH-HHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc--HHHHHh-hcCHHHHHHHhCCCCCcccccccchhhhhHHHHHH
Confidence 6666665431122221 22 56678888877764 456653 4445788899987666555554554322 3
Q ss_pred ---HHHHHHhhcc
Q 000146 1101 ---LILERIKLNG 1110 (2052)
Q Consensus 1101 ---~I~~~l~k~~ 1110 (2052)
.+...+++.+
T Consensus 724 ~~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 724 CVYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc
Confidence 5667777643
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.61 E-value=0.04 Score=67.20 Aligned_cols=283 Identities=9% Similarity=0.049 Sum_probs=130.8
Q ss_pred CCCchhhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChh--HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhC
Q 000146 714 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 789 (2052)
Q Consensus 714 ~~~~~~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~--~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG 789 (2052)
..|+...+..+.+.++.-+... ..|....-.+..+++. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~--- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITD--- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCC---
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCC---
Confidence 4577766667777777655543 3566666566666554 222 3566666665 89999999999999988752
Q ss_pred CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000146 790 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 869 (2052)
Q Consensus 790 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~ 869 (2052)
.+ -+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++
T Consensus 134 ~~--m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~------------------------------- 179 (355)
T 3tjz_B 134 ST--MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN------------------------------- 179 (355)
T ss_dssp TT--THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH-------------------------------
T ss_pred HH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-------------------------------
Confidence 11 246788889997 99999999999999887777554333333322
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh-hccchH
Q 000146 870 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 948 (2052)
Q Consensus 870 ~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r-L~DsN~ 948 (2052)
++.+.+.|+|-.+-..|+..+.++.... ...+..++..|... +. +.
T Consensus 180 --------------------------~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----~~a~~kLv~~l~~~~l~--~~ 226 (355)
T 3tjz_B 180 --------------------------EAQEAASSDNIMVQYHALGLLYHVRKND-----RLAVSKMISKFTRHGLK--SP 226 (355)
T ss_dssp --------------------------HHHHHTTCSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHSSCCS--CH
T ss_pred --------------------------HHHHHhcCCCccHHHHHHHHHHHHHhhc-----hHHHHHHHHHHhcCCCc--Ch
Confidence 2222233344333344555555544210 00012222222221 11 22
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccCh
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np 1026 (2052)
-....-++++..++. .+-......++..+...|......|.=.|..++-.+-.... ....+..+...|.++ ++
T Consensus 227 ~~q~~llr~l~~~~~---~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d~ 301 (355)
T 3tjz_B 227 FAYCMMIRVASRQLE---DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--KA 301 (355)
T ss_dssp HHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--SS
T ss_pred HHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--Cc
Confidence 222222232222221 11123345666777777888888888777777777644211 122344566667765 47
Q ss_pred hHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
.+|.-++..|.......+. -+...-.-+..|+.|.|..++--|...|
T Consensus 302 niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 8899999888877665442 1222333388899999998887775544
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.19 Score=66.52 Aligned_cols=363 Identities=13% Similarity=0.103 Sum_probs=198.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
+.+...+.+. ..|.-|.--|.++........ ...+.+.++|.. .....++.+++.|.++... +. .+
T Consensus 299 ~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~-VK 368 (778)
T 3opb_A 299 QLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-AS-VK 368 (778)
T ss_dssp HHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SH-HH
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HH-HH
Confidence 4445555442 567777778887765532221 223455555542 1112377788888765432 11 11
Q ss_pred hhH---HHHHHHHHHhhhchhhhHHHHHHHHHHHhh---hCh----hHHHHHHHHHHhhCCCHHHHH---------HHHH
Q 000146 719 KCV---VLCLLGISERVADIKTRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVLS---------EGIL 779 (2052)
Q Consensus 719 ~~~---~~il~~LveKlgd~K~r~~a~e~L~~l~E~---~~~----~~Vl~~L~~~l~~~KnpKv~~---------e~L~ 779 (2052)
..+ ..++..|++-+.+.........++..++.. ... +.-+.+|..++ +++.|+... +...
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHH
Confidence 111 345666666655322223333344444332 211 12345555554 222332211 1111
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 780 WMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 780 ~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+-...+-+. .+++.+..+ +.+.++.+|..|..++..|-.. +..+..+-+ ++
T Consensus 448 ~~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvq------------------qG 498 (778)
T 3opb_A 448 FNEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQ------------------QG 498 (778)
T ss_dssp HHHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHH------------------TT
T ss_pred HHHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH------------------CC
Confidence 122222222 356666666 8888999999999998888532 222222100 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCCh---HHHHHHHHHHHHHHHhccccCC-C-CChhh
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQ-P-AGTGE 934 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~W---k~R~eale~L~~ll~~a~~~I~-~-~~~~e 934 (2052)
..+.|+..+.+..- ..|..|...|..++...++.+- + ....+
T Consensus 499 ---------------------------------al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 499 ---------------------------------AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp ---------------------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred ---------------------------------CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 01123333333321 3688999999999865444332 1 11136
Q ss_pred HHHHHHhhhc-cchH-------------HHHHHHHHHHHHHHHHhC---hhhH-Hhhh--HHHHHHHHHhCCCcHHHHHH
Q 000146 935 LFGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMG---PAVE-KSSK--GVLSDILKCLGDNKKHMREC 994 (2052)
Q Consensus 935 L~~aL~~rL~-DsN~-------------~V~~~Al~~l~~la~alg---~~~~-~~~~--~llp~ll~~l~D~k~~VR~a 994 (2052)
.++.|...|. ++.. .-...|+.+|..||..-+ .+.. ..++ ..+|.+.+.+.+.+..||++
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 8888888887 2321 126689999999987643 2333 3444 48899999999999999999
Q ss_pred HHHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC----CchhhhHHHHH
Q 000146 995 TLTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPAS 1057 (2052)
Q Consensus 995 a~~aL~~i~~~~~-l-~~l-----------l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~ 1057 (2052)
|.+++..++.+.. + ..+ ++.+...+... +...|..+...|+..-...+.. -.....+..++
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 9999999996442 2 233 44566666654 6788888887776542222210 11134666777
Q ss_pred hhcCC--CCHHHHHHHHHHHHHHHH
Q 000146 1058 IAMTD--KSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1058 ~~L~D--~~~dVRkaA~~~L~~l~~ 1080 (2052)
..|.| .+.++|..+..++.-+..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 78878 899999999999988886
No 83
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.47 E-value=0.54 Score=61.10 Aligned_cols=373 Identities=10% Similarity=0.062 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhh
Q 000146 677 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 752 (2052)
Q Consensus 677 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~ 752 (2052)
....||.+|. ..+..++..+...|..++..... .+..+ .-.||.||.-|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3556676653 23456776677777666542111 12222 2357888887755 568889988998887531
Q ss_pred Chh--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCC-CC---ChHhHHHHHH--hhCC-----------
Q 000146 753 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 807 (2052)
Q Consensus 753 ~~~--------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~-~l---~~k~li~~l~--~~gL----------- 807 (2052)
+.+ =.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 135667777655567777766655554443200000 00 1223444331 0011
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhChhhHhhh---hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCC
Q 000146 808 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 808 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
...+..|+..|..+|..|-.. ++..+..+ +++.+.++..|.....+..... +.+...
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-----~~~ena-------------- 261 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-----KLVENC-------------- 261 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-----HHHHHH--------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-----HHHHHH--------------
Confidence 233679999999999888642 22222222 4566777777776543321100 000000
Q ss_pred CcccccccccHHHHhhcC-CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVA 962 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~-d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la 962 (2052)
+-+...|.-.....+. ...|...... +...-... ....+..-.-..+++.|...|.+ .+..+...|+.+|..|+
T Consensus 262 --v~aL~NLs~~~~~e~~~~~~~~~~~~~-~~~~~~~~-~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 262 --VCLLRNLSYQVHREIPQAERYQEAAPN-VANNTGTS-PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp --HHHHHHHHTTHHHHSTTCCC---------------C-CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhccccccccchhhhhhhccc-cccccccc-CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000000 00000010 11111110013456777778854 47889999999999998
Q ss_pred HHhCh---hhHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh-----hHHHHHHHHhcCc------cCh
Q 000146 963 SAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK-----MVPYVTTALTDAK------LGA 1026 (2052)
Q Consensus 963 ~alg~---~~~~~~--~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~-----ll~~l~~~L~~~k------~np 1026 (2052)
..-+. .+...+ ...+|.|++.|......|+.+|..+|..+........ .+|.+...|.+.. .+.
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchH
Confidence 64332 222233 3569999999999999999999999999987665433 4566677676542 123
Q ss_pred hHHHHHHHHHHHHhccCCCC-Cc--hhhhHHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGF-PD--AAHLLKPASIAMTDK--SSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~-~~--~~~ll~pl~~~L~D~--~~dVRkaA~~~L~~l~~ 1080 (2052)
++...++..|...+...... .. -...+++|+..|.+. ...++++|..+|..+..
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 55666777776655432211 11 124567788888775 78888888877765543
No 84
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.43 E-value=0.012 Score=72.90 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=102.5
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
+.+...+-+.+|..|..|.-.|+.++....-..+-. ...|. ..|++++..+|- .+|.-|+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYV--- 236 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFV--- 236 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCS---
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccc---
Confidence 456667789999999999999999874211111100 22232 455555555542 2343342
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
.|+ ...|||.+.++|.++ .+.... -.++..+...+.+..|++|.+.+.-|..+ .. +...++.+
T Consensus 237 --------SDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~D-LL~~Ld~V 300 (800)
T 3oc3_A 237 --------DDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KE-FVEDKDGL 300 (800)
T ss_dssp --------SSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GG-GCCCHHHH
T ss_pred --------cCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HH-HHHHHHHH
Confidence 233 367999999999999 662222 35566665667888999999998888766 11 21126889
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
++++..+|.|.+-+||..|+++|.-+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999997666
No 85
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.07 E-value=10 Score=54.10 Aligned_cols=185 Identities=12% Similarity=0.019 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhc-------CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 338 WSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~--~ki~~~dy~~l~~~L~k~l~-------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
=..|.-|+..|...+.. ..+...+...|-..|...+. +....|+...+.+|..+++.--+ .....+++
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~ 137 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLI 137 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHH
Confidence 34566666666665421 22333333333334444433 14577888889999998876332 34667888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cC-----------------CCHHHHHHHHHHHhhc-----------------
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKA-GC-----------------LNLVDVVEDVKTSVKN----------------- 453 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~-~~-----------------~~l~~ll~~l~~~L~~----------------- 453 (2052)
.|+..+.. ....++.+..+|..+.+- .. ..+.++++.+...+++
T Consensus 138 ~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~ 216 (1204)
T 3a6p_A 138 ELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESK 216 (1204)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhh
Confidence 88877754 455577777777777542 00 0122344444334432
Q ss_pred --CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC-hhHHHhHhhcc
Q 000146 454 --KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM-RPLERSIEKLD 528 (2052)
Q Consensus 454 --Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge-~~~~~~l~~Ld 528 (2052)
.++.++..+++.+..++.-.+...+...-..+++.+..++.| +++|.+|.+||..++..-.. ....+++.-+.
T Consensus 217 ~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~ 292 (1204)
T 3a6p_A 217 AQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFG 292 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGS
T ss_pred hhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHh
Confidence 123455556665555444223222211112478888888875 78999999999999864332 22233444443
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.07 E-value=0.36 Score=61.35 Aligned_cols=390 Identities=12% Similarity=0.028 Sum_probs=206.5
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hh-hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhh-h-hhh-
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RY-AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVEL-E-AVD- 166 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~-~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~-~-~~~- 166 (2052)
.+.+-+++...|..+|+.|+.+|..+...... .. .. ....++.||+- |. ..+.++..|..++..+... + .-.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455677888999999999999887633221 11 11 23467888865 65 6788999999998887753 1 112
Q ss_pred ----hHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhh--------CC--------CChhHHH
Q 000146 167 ----VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRA 225 (2052)
Q Consensus 167 ----~v~e~Ll~~l~-~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll--------~~--------~dk~VR~ 225 (2052)
..++.|+..+. +.+++++..++.+|..+-..-..+..=....++.|..++ ++ .+..|..
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 33567778887 778999999988888776431111100125677777877 22 3456666
Q ss_pred HHHHHHHHHHHhhCCchhhHHHHh--hChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCC
Q 000146 226 SSKGLTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTA 303 (2052)
Q Consensus 226 ~a~~l~vely~~lG~~~l~~~L~~--~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (2052)
.|..++..|... ++ .+..+.+ +.-|..+..|........ ...+... ...... ..-+... ..
T Consensus 162 ~a~~aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~---~~~~~~e-~a~~~L--~nLs~~~-~~------- 224 (457)
T 1xm9_A 162 NATGCLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASR---CDDKSVE-NCMCVL--HNLSYRL-DA------- 224 (457)
T ss_dssp HHHHHHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTC---TTCTTHH-HHHHHH--HHHTTTH-HH-------
T ss_pred HHHHHHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccC---CchHHHH-HHHHHH--Hhcccch-hc-------
Confidence 888887777754 22 2233321 333444444433221110 0001000 000000 0000000 00
Q ss_pred CCCCCCCCCC-CCC-cccccCcCccchhhhhcccCChHHHHHHHHHHHHHh---cCCCCCC-CChHHHHHHHHHHhc-Cc
Q 000146 304 DVPPEIDEYE-LVD-PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRIAP-GDFTEVCRTLKKLIT-DV 376 (2052)
Q Consensus 304 ~~~~~iD~~d-l~~-~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~---~~~ki~~-~dy~~l~~~L~k~l~-D~ 376 (2052)
+.+...+... ... ..... ... ..|. ....+. +..+.+ + .+. ..++-.. --..++++.|...+. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 296 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEK-SST-GCFS-NKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296 (457)
T ss_dssp HSCCHHHHHHHTC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred cCcchhhhcccccccccccc-ccc-chhh-ccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcC
Confidence 0000000000 000 00000 000 0110 000000 000000 0 000 0010000 012456777778887 55
Q ss_pred CHHHHHHHHHHHHHHHHHhhh---cc-hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHHH
Q 000146 377 NIAVAVEAIQAIGNLARGLRT---HF-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVE 445 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~---~f-~~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll~ 445 (2052)
+..+...|+-+|..|+.+-.+ .. ...+ ...+|.|++.+......|+..+..+|..+..+ ... ...++
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~ 374 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFP 374 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhH
Confidence 788899999999999865332 11 1112 35789999999999999999999999999764 222 23456
Q ss_pred HHHHHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCC-ChHHHHHHHHHHHHHH
Q 000146 446 DVKTSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 446 ~l~~~L~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~ 512 (2052)
.|+.-|.+.++ .+...++..|..++...+... .... ...++.|..++... +..||..|...|..++
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~-~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 66666766543 567788888888776544321 1111 24778888999888 8999998888776443
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.85 E-value=0.56 Score=63.48 Aligned_cols=256 Identities=17% Similarity=0.120 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChh--hHhhh----hhccHH
Q 000146 770 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 843 (2052)
Q Consensus 770 npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkP~ 843 (2052)
++.+|.+++..|.-+. .|.. -.++++.+... +.+.++.+|..|.-.+|-+|.-.|.. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~--~GS~---~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAA--MGSA---NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHS--TTCC---CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 3778877777665543 2432 13567777776 77777888999999999988766632 22111 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhc-CCCChHHHHHHHHHHHHHHHh
Q 000146 844 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 922 (2052)
Q Consensus 844 ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l-~d~~Wk~R~eale~L~~ll~~ 922 (2052)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-.|..++-.+.-..
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAy-- 570 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALAY-- 570 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--
Confidence 1111100010000 00000 123444444 4678999998887765322
Q ss_pred ccccCCCCChhhHHHHH-HhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000146 923 ANKRIQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 923 a~~~I~~~~~~eL~~aL-~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-~D~k~~VR~aa~~aL~ 1000 (2052)
....+ ...++.| .....|.+..|++.|+..|+.++ +|.. ..++.++..| .+.++.||..+..+|+
T Consensus 571 ----aGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 571 ----AGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ----TTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ----cCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222 4455534 44457888899999988888765 3332 2245555543 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCC--CCHHHHHHHHHHHH
Q 000146 1001 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1076 (2052)
Q Consensus 1001 ~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D--~~~dVRkaA~~~L~ 1076 (2052)
.+....|...+++.|...+.+. +..+|+.++.-|..+....... +-+..++.-+.+.+.| .++.+|-.|+-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8877677778888777777665 6899999999998776654432 3566777777777766 45778988888877
Q ss_pred HHH
Q 000146 1077 EIL 1079 (2052)
Q Consensus 1077 ~l~ 1079 (2052)
-+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.72 E-value=0.11 Score=63.47 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=130.9
Q ss_pred CCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHH
Q 000146 309 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 387 (2052)
Q Consensus 309 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~ 387 (2052)
..||.-.+...|+...- .|-+ ...+-+.+++++..+..+. .+..+....-..++-.+.+++...|..+....--.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~--~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNE--TPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTS--SSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcC--CCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34666566655554421 2321 1124445567888877655 34322222345778888889998888877777767
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 388 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 388 l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
+..+++. ...+-.+...|.+=+.++++.+|..|..+|..+... .-++.+.+.+..++.|++|-||..++-...
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6666654 234558899999999999999998887777776542 447888889999999999999999998888
Q ss_pred HHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 468 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 468 ~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
+++...+. ..+.++..+..++.|+++.|--.|..++..+.+
T Consensus 165 kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 165 HLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 87765432 236788899999999999998777666665543
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.68 E-value=0.068 Score=66.48 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=128.0
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccc---cCCCCChhhHHH----HH-Hhhhcc-----chHHHHHHHHHHHH
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANK---RIQPAGTGELFG----GL-RGRLYD-----SNKNLVMATLITLG 959 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~---~I~~~~~~eL~~----aL-~~rL~D-----sN~~V~~~Al~~l~ 959 (2052)
+...|...+-|.+|.+|-.|.-.|++++..... +....+ .++.- .| ..|++| .-.-|+.+|.++++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 667888889999999999999999999985321 122222 14432 22 356766 23558888888888
Q ss_pred HHHHHhChhh---------------H---------Hh-------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000146 960 AVASAMGPAV---------------E---------KS-------SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 960 ~la~alg~~~---------------~---------~~-------~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+ ..|...+ + +| ...+++.++..|+|....||..|..+|--++..-.+
T Consensus 254 aL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l 332 (800)
T 3oc3_A 254 RI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSL 332 (800)
T ss_dssp HH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTH
T ss_pred HH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhH
Confidence 87 5554221 1 11 366788999999999999999999999988833347
Q ss_pred hhhHHHHHHHHhcC-ccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1009 DKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1009 ~~ll~~l~~~L~~~-k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
+.++..++..|.+- ..+ ..-..++..|+..+..-........+++-++..+.++-.+||+++..++.+|.
T Consensus 333 ~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 333 DLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 78888899998742 122 23456666666554432221122356666999999999999999999987766
No 90
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.44 E-value=0.013 Score=60.90 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.|+..+.|.+|.+|..|+..|..+- ..+.+..|...|.|.+..|+..|+..|+.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777788888888888888875432 1456777777788888888888888888664 13
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~ 1000 (2052)
..++.++..+.|..+.||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45777888888888888888877765
No 91
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.31 E-value=0.4 Score=66.31 Aligned_cols=396 Identities=10% Similarity=0.044 Sum_probs=212.3
Q ss_pred chhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh-hhh--hhhHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhh---
Q 000146 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELE--- 163 (2052)
Q Consensus 92 ~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~-~~~--~~~~~vi~~LieK~L~-~-r~~tk~~A~~~~l~~~e~~--- 163 (2052)
+.+.+...+.|+.-.-|-.|.|++..++..... .+. ...-.++..++.++|. + .+.+..-=..|+-.....-
T Consensus 509 l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dpr 588 (997)
T 1vsy_5 509 LFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLR 588 (997)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChh
Confidence 466777788999999999999999998865432 111 2244678888899997 3 6666653222222222222
Q ss_pred hhhhHHHHHHHH-----hhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh
Q 000146 164 AVDVFLDVMEKA-----IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 238 (2052)
Q Consensus 164 ~~~~v~e~Ll~~-----l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l 238 (2052)
....+++.|... ...-..=..+.-+..|..++.+.|-+.-..+.++..+. +.|+.++||++.-.++..++...
T Consensus 589 R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 589 RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 234566655221 11112224445678888999998886555778887777 99999999999999999888765
Q ss_pred C-Cc--hhhHHHH---h-----hC-----hHHHHHHHHHHHHhcc---CC---CCCCccchhhhhHhhhhccc---ccCC
Q 000146 239 G-KD--PVKTILF---E-----KM-----RDTMKKELEVELVNVS---GT---ARPTRKIRAEQDKELGQELI---SEDV 293 (2052)
Q Consensus 239 G-~~--~l~~~L~---~-----~L-----kp~qlkeLe~~f~~~~---~~---~~p~R~~rs~~~~~~~~~~~---~~~~ 293 (2052)
- +. -++..+- . .+ .+....-+.+.|++++ +. ..|.-..++....-. .+.. ....
T Consensus 667 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~-kTvl~wl~~~l 745 (997)
T 1vsy_5 667 SNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT-STIFYWIKEMA 745 (997)
T ss_dssp CCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH-HHHHHHHHHHS
T ss_pred cccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH-HHHHHHHHHHh
Confidence 1 10 0111110 0 00 0111111223333221 00 000000000000000 0000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHH-----HHHhcCCCCCCCChHHHHHH
Q 000146 294 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-----TKLASTKRIAPGDFTEVCRT 368 (2052)
Q Consensus 294 ~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L-----~~L~~~~ki~~~dy~~l~~~ 368 (2052)
+. ....--.++++.. ++ | .+......+ +..| |..+ ...++.--+.+.....++.+
T Consensus 746 ~~----------~~~~~l~~~~~~~-ll---P--~ll~l~~~~---d~~e-L~~~~a~~~l~~ls~~~~~~~~~~~~l~~ 805 (997)
T 1vsy_5 746 RG----------PNKVLLVPYLVDY-VL---P--FLIGLVKHK---DVCA-LASLDPVRLYAGLGYMPIRKNHVAAIVDY 805 (997)
T ss_dssp SG----------GGHHHHHHHHTTT-TT---T--TTCTTSSCS---HHHH-HTTCCSHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred cC----------CCccchhhhhHHH-HH---H--HHHHHhhcC---cHHH-HHhhHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00 0000000000000 22 1 122222222 1111 2222 22222211222334457777
Q ss_pred HHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcc--h-hhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-CHHH
Q 000146 369 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVD 442 (2052)
Q Consensus 369 L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~~~-~l~~ 442 (2052)
|..... +.+= ++..++..++.+.- +.-| . .....++-.++..+.|+. ..||+.|..+|-.++. |. ....
T Consensus 806 l~~~~~~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~ 880 (997)
T 1vsy_5 806 VCSSNVALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQP 880 (997)
T ss_dssp SSCTTTTSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhh
Confidence 766666 4555 66666666665543 2222 1 234567888888899999 9999999999999986 65 4333
Q ss_pred HHHHHHHHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 443 VVEDVKTSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 443 ll~~l~~~L~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
+. ++...+..+- -..|-++..-|..++...|-.. ..+.++.++..|...++|+.+ |+..+.
T Consensus 881 ~~-~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk 958 (997)
T 1vsy_5 881 LL-SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAK 958 (997)
T ss_dssp HH-HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTH
T ss_pred HH-HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHH
Confidence 33 3333332221 1456677777888887765432 245678888888888899766 999999
Q ss_pred HHHHHHHHHhCC
Q 000146 506 SVLAAIAKSVGM 517 (2052)
Q Consensus 506 ~~l~~l~~~~Ge 517 (2052)
++++.|.+.--+
T Consensus 959 ~tlseFkrTH~D 970 (997)
T 1vsy_5 959 NTISEFKKVRAD 970 (997)
T ss_dssp HHHHHHHHHTST
T ss_pred HHHHHHHhccch
Confidence 999999877553
No 92
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.15 E-value=8.5 Score=51.20 Aligned_cols=288 Identities=11% Similarity=0.090 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHH
Q 000146 769 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 848 (2052)
Q Consensus 769 KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~L 848 (2052)
++..++.-++-.|+++-..-+.....+..+.+.+.+. |.+.+...|.-|++.|.++ ...+.++..|..-. ..++.|
T Consensus 306 ~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgLaYL--Sl~~~VKe~L~~d~-~~L~~L 381 (778)
T 3opb_A 306 NVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEALAYL--SLKASVKIMIRSNE-SFTEIL 381 (778)
T ss_dssp TSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHH--TTSSHHHHHHHHCH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHHHHH--hCCHHHHHHHHhCH-HHHHHH
Confidence 4556777677777666543344456778899999887 8887777788888887655 56778887774332 223333
Q ss_pred HHHHhcCCCCCCCC-Cc-c----ccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHH-HHHHHH
Q 000146 849 DAEYEKNPFEGTVV-PK-K----TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA-VNKILE 921 (2052)
Q Consensus 849 e~efeK~~~~~~p~-p~-r----~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~-L~~ll~ 921 (2052)
-+-+.. ....... .. . -................+..-.+. ..| + ..-.+..+ ...+.+.. -.+.+.
T Consensus 382 v~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~--~~p-~--~~~~d~~~-~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 382 LTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX--XXP-A--ADKVGAEK-AAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------------------CCTHH-HHHHHHHHHHHHHTT
T ss_pred HHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc--cCc-c--cCcccccc-cchHHHHHHHHHHHH
Confidence 333321 1100000 00 0 000000000000000000000000 000 0 00011112 22222222 222221
Q ss_pred hccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHHHHHHHhCCCcHH---HHHHHH
Q 000146 922 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S-KGVLSDILKCLGDNKKH---MRECTL 996 (2052)
Q Consensus 922 ~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~-~~llp~ll~~l~D~k~~---VR~aa~ 996 (2052)
. ..+++.|...++..+..++..|+.+|..|+.. +..+.. + ...++.++..+.+.... +|..|.
T Consensus 455 -------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 455 -------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp -------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred -------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 1 34888999999888999999999999999744 333222 2 35789999999887655 788888
Q ss_pred HHHHHHHHhcCch---------hhHHHHHHHHhc-Ccc-----------ChhHHHHHHHHHHHHhccCCCC--Cc-----
Q 000146 997 TVLDAWLAAVHLD---------KMVPYVTTALTD-AKL-----------GAEGRKDLFDWLSKQLTGLSGF--PD----- 1048 (2052)
Q Consensus 997 ~aL~~i~~~~~l~---------~ll~~l~~~L~~-~k~-----------np~~R~~~l~~L~~~l~~~~~~--~~----- 1048 (2052)
.+|-.+....... ..++.+...|.. ... +...+.+++..|..... .+.. .+
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs-~~~n~~E~~r~~I 601 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS-SETSDGEEVCKHI 601 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-CCSHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-CCcccchHHHHHH
Confidence 9998888655321 345667777652 110 00236788877775443 3210 01
Q ss_pred hh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1049 AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1049 ~~--~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+. ..++.|...|.+.+..||++|.+++.-++.
T Consensus 602 i~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 602 VSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 12 134457778888899999999999999986
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.81 E-value=0.24 Score=60.68 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=128.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~d--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
.+...+.+.+=..+..|.-.|..|+....-.. .. -...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46666777778888899999988874311000 00 112455666654 45677889999999999987332211122
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000146 403 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 469 (2052)
Q Consensus 403 -~~~llp~LL~klkdkK~----~V~~aa~~aL~ai~~~--~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~ 469 (2052)
....+|.|++.+...+. .|++.+..+|.++..+ .+... ...++.|...|++.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4888888899888752 01111 12567788888999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.... ........ .-.+|.|+.++.+.++.+|+.|..+|..+...-+
T Consensus 291 a~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 291 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred hCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 5332 22222222 3478999999999999999999999998886544
No 94
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.60 E-value=3.1 Score=56.50 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=96.2
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
.++|. |..|+-.|.-+- .++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.. .+..|.
T Consensus 370 ~~~~~-k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL~ 435 (963)
T 4ady_A 370 AQNWA-KFTATASLGVIH------KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYLK 435 (963)
T ss_dssp CCTHH-HHHHHHHHHHHT------SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHHH
T ss_pred cchHH-HHHHHHHhhhhc------cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHHH
Confidence 35564 344544444332 2233445777777776 457788999999999998877642 334444
Q ss_pred HHhccCc--------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000146 412 EKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 483 (2052)
Q Consensus 412 ~klkdkK--------~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 483 (2052)
+.+.+.+ ..|+-.+.-+|--++.. +.=+++++.|...+.+.++.++..+..-|+.++-....... +.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i~ 510 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---IH 510 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---HH
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---HH
Confidence 4444433 56666666666655432 33467888888888877777777777777766543322211 13
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.|+.. +++|.+..||..+..+|+.++ +|
T Consensus 511 ~LL~~---~~e~~~e~vrR~aalgLGll~--~g 538 (963)
T 4ady_A 511 DMFTY---SQETQHGNITRGLAVGLALIN--YG 538 (963)
T ss_dssp HHHHH---HHHCSCHHHHHHHHHHHHHHT--TT
T ss_pred HHHHH---HhccCcHHHHHHHHHHHHhhh--CC
Confidence 33332 345677788888888887663 45
No 95
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.89 E-value=0.62 Score=49.47 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=82.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|-+++... +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 14 l~~~dw~~----~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45678964 44555555421 222478999999999999999999999999999999999996543 66888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~ 1020 (2052)
.+...+.+ ....|++-+...+..|....+-+.-+..+...|.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88877764 3678999999999999998753332333333343
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.67 E-value=2.7 Score=54.46 Aligned_cols=310 Identities=15% Similarity=0.179 Sum_probs=175.4
Q ss_pred hhhHHHHHHHHHHhhhchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHhCC
Q 000146 718 KKCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGV 790 (2052)
Q Consensus 718 ~~~~~~il~~LveKlgd~K---~r~~a~e~L~~l~E~~~~~~V---l~~L~~~l~~-~KnpKv~~e~L~~L~~~i~~fG~ 790 (2052)
++.+...++.|++++.+.- -|-.|...|..++..+..... +..++..+.+ ..+..+...+|+.|..++..-+.
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 4567888899999987754 367777778887776554322 4455555533 36777777778777666532111
Q ss_pred C-----------CC---------ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH
Q 000146 791 S-----------HL---------KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA 850 (2052)
Q Consensus 791 ~-----------~l---------~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ 850 (2052)
. .+ .-.+-+..+..+ |+..+-.||-.+++++..|-..-+......+ -.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~I-----------l~ 163 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQII-----------LV 163 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-----------HH
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHH-----------Hh
Confidence 0 00 002335556667 8999999999999999988866443332221 11
Q ss_pred HHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC
Q 000146 851 EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 930 (2052)
Q Consensus 851 efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~ 930 (2052)
.+. =.+.|+..++|+.-.+|.||+-.|..+... |..|+.-
T Consensus 164 ----~p~-----------------------------------gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQkl 203 (651)
T 3grl_A 164 ----SPM-----------------------------------GVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKI 203 (651)
T ss_dssp ----STT-----------------------------------HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----Ccc-----------------------------------cHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 100 013577888899999999999999888864 4555431
Q ss_pred -ChhhHHHHHHhhhccc----hHHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHHHHHhCCCcH-------HHHH--H
Q 000146 931 -GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--C 994 (2052)
Q Consensus 931 -~~~eL~~aL~~rL~Ds----N~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~ll~~l~D~k~-------~VR~--a 994 (2052)
-|...+..|...+.+- ...|+.-++.++..|...-..+ ..|.+ .++|.+...|..... .++. .
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 1333444444444332 3467788888888887552111 11111 133444443332111 1111 2
Q ss_pred HHHHHHHHHHhcCc-------------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC------------Cch
Q 000146 995 TLTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------------PDA 1049 (2052)
Q Consensus 995 a~~aL~~i~~~~~l-------------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~------------~~~ 1049 (2052)
+..++..++...+. ..+++.+...+-.......+|.+++..++..+...+.. +..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 33333333322110 11344555666554445678999998888877654321 011
Q ss_pred hhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHH
Q 000146 1050 AHLLKPASIAMTDK-SSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1050 ~~ll~pl~~~L~D~-~~dVRkaA~~~L~~l~~ 1080 (2052)
..++..+...+.+. .-++|-+|..|+..+..
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 12233344446555 46999999999987763
No 97
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.67 E-value=0.42 Score=58.54 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHHHh
Q 000146 340 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL 414 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~k-i~~--~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~kl 414 (2052)
-|.+|...|..|+.... ... ..++.+++.|...+...+..|...|+.+|..|+.+-....... -...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874211 100 1135568888888988889999999999999986411111111 124688999875
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----H---HHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000146 415 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 480 (2052)
Q Consensus 415 -kdkK~~V~~aa~~aL~ai~~~~~~~----l---~~ll~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 480 (2052)
+.....+++.+..+|.++..+ +.. + ...++.|...|.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888888753 211 1 2356667777776654 4888887777665431 12222112
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ...+|.|+.+|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22 237899999999999999999998888775
No 98
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.44 E-value=7.5 Score=45.04 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 339 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.+|.+.|.+++.++-.. .+.-|.++++.+.....|.+..|+...+..|+..+.. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976321 2346889999999877799999999988888887732 2 3478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000146 419 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~----~~--~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 472 (2052)
+.|...+..|...++.. -| .+ +..+-..|+.-+.+.|..+|..|++|+.+++..
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 99998888888888765 12 11 122334455566788999999999999998853
No 99
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.29 E-value=0.53 Score=59.63 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhh--hhHHHHHHHHh
Q 000146 340 ERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 414 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~~---~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 414 (2052)
-+.+|...|..|+....-.. ..++..++.|...|...+..|...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 36778888888874321000 11355678888889888899999999999999863111111111 25689999975
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----H---HHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000146 415 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 480 (2052)
Q Consensus 415 -kdkK~~V~~aa~~aL~ai~~~~~~~----l---~~ll~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 480 (2052)
......+++.+..+|.++..+ |.. + ...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 446788899888999888874 211 1 2356667777776543 4888888777765431 22222212
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ...+|.|+.+|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 347899999999999999999998888775
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.28 E-value=0.68 Score=58.63 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=127.5
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-C--ChHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-G--DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~--dy~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
.+...+.+.+=..+..|.-.|..|+....-.. . .-...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666777777788888888888864210000 0 0112455666764 45678889999999999998432211122
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000146 403 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 469 (2052)
Q Consensus 403 -~~~llp~LL~klkdkK~----~V~~aa~~aL~ai~~~--~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~ 469 (2052)
....+|.|++.+...+. .|++.+..+|.++..+ .+... ...++.|...|++.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4888888899888752 01111 12467778888899999999999999987
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.... +....... .-.+|.|+.+|...++.+|+.|..+|..|...-
T Consensus 407 a~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5332 22222222 347899999999999999999999998887543
No 101
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.04 E-value=0.41 Score=50.42 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=76.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 18 l~~~dw~~----ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678963 4445455531 2333478999999999999999999999999999999999987543 55666
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+...+....+.|++-+...+..|....+-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6666665677899999999999999877533
No 102
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.75 E-value=0.75 Score=49.69 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=75.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+-
T Consensus 28 ~~~~Dw~~----~leicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSL----IMDICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34568964 3345555542 1233478999999999999999999999999999999999987433 34666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.++..+.. ..+.|++-+...+..|....+-
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66655544 5578999999999999998763
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.63 E-value=0.048 Score=63.12 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
..+.|.+|.+|..+...+ . .+ .|...++|.+..|+..++.. ++. +
T Consensus 129 ~L~~D~d~~VR~~aA~~l-----------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ 173 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-----------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------E 173 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-----------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------G
T ss_pred HHHcCCCHHHHHHHHHhc-----------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------H
Confidence 345778888888877632 1 11 23455678888888777663 221 2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHh
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1058 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~ 1058 (2052)
.+...++|....||.++...+ +. +.+...+.++ ++.+|..+...+. .+.+.
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l-------~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~ 224 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALR 224 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHH
Confidence 233566888888888877642 22 2344445655 5788888776631 13334
Q ss_pred hcCCCCHHHHHHHHHHH
Q 000146 1059 AMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1059 ~L~D~~~dVRkaA~~~L 1075 (2052)
.|.|.++.||.+|...|
T Consensus 225 ~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 225 ELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HCCCCCHHHHHHHHCCC
T ss_pred HccCCCHHHHHHHHHHh
Confidence 45888888888887654
No 104
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=92.46 E-value=0.54 Score=59.69 Aligned_cols=180 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--h
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--S 403 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~ 403 (2052)
.+...+.+.++..+..|+..|..++.. +..... --...++.|.+.+.+.+..+...|+.+|..|+.+- ...... -
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~ 84 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRR 84 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 466778889999999999999998742 211100 01234677888888889999999999999999741 111111 2
Q ss_pred hhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHhh--------cC--------ChHHHHH
Q 000146 404 RFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDVKTSVK--------NK--------VPLVRSL 461 (2052)
Q Consensus 404 ~~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l~-----~ll~~l~~~L~--------~K--------np~vR~~ 461 (2052)
...+|.|++.++ ...+.+++.+..+|..+... .... ..++.|...+. +. .+.+...
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 356899999998 67889999999999999864 2322 35566666662 22 2344457
Q ss_pred HHHHHHHHHHhcChhHHHHhhh--hHHHHHHHhhcC------CChHHHHHHHHHHHHHH
Q 000146 462 TLNWVTFCIETSSKAAVLKVHK--DYVPICMECLND------GTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 462 ~l~~L~~~l~~~~~~~l~~~l~--~l~p~l~k~l~D------s~~~VR~aA~~~l~~l~ 512 (2052)
++..|..+.. . +.......+ -++|.|+.+|.+ .+..+.+.|..++..+.
T Consensus 163 a~~aL~nLs~-~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 163 ATGCLRNLSS-A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHTT-S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcc-C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 7777666543 2 222222222 567777777753 45556666666665553
No 105
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.04 E-value=1.1 Score=48.77 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=82.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||.. +-.|.+++... +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 26 l~~~Dw~~----ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEY----IIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 34568954 44555555431 22347899999999999999999999999999999999998754 355777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~ 1020 (2052)
.++..+.. ....|++-+.+.+..|....+-..-+..+...|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77777753 3578999999999999998764333333333343
No 106
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.92 E-value=0.98 Score=47.98 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=77.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||. ++-.|.+++.. .+..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 24 l~~~dw~----~ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHH----HHHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3556896 34444444432 233347899999999999999999999999999999999998643 456788
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+++.+.+ ....|++-+...+..|....+-+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88888865 46789999999999999987543
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=91.09 E-value=51 Score=43.73 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=57.3
Q ss_pred HhhhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchh
Q 000146 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYS 87 (2052)
Q Consensus 8 ~~~~~~lpl~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 87 (2052)
+.+=.=+|+-++|.|.+.+.|..|-.-|..+.+ ++..+... ...
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~------~~~~~~l~-----~~~------------------------- 74 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQ------DAKCRKLL-----LRE------------------------- 74 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT------SHHHHHHH-----HHT-------------------------
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc------CcHHHHHH-----HHc-------------------------
Confidence 344456899999999999999999999998874 23333220 000
Q ss_pred hhhhchhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh
Q 000146 88 FVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADA 124 (2052)
Q Consensus 88 ~~~~~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~ 124 (2052)
..+..++...+.|+|..+++.|..+|..+....+.
T Consensus 75 --~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 75 --QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp --THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred --CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 01256677889999999999999999887765444
No 108
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.27 E-value=11 Score=46.24 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 339 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.+|.+.|.++..|+-.. .+.-|.++++.+.....|.+..|+...+..|+..+.. . ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999975221 2245778888888877899999999999999888752 2 2357888999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----c--CCC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000146 419 PTVAESLTQTLQAMHKA----G--CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~----~--~~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 472 (2052)
+.|...+..|...++.. - +.. +..+-..|+..+.+.|..+|..|+.|+.+++-.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 99988888888777743 0 111 233344566667788999999999999998853
No 109
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=88.98 E-value=2.1 Score=45.86 Aligned_cols=99 Identities=17% Similarity=0.351 Sum_probs=74.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+ ..|.+++..||.++..+++.+|+.|...+ +.++
T Consensus 29 l~~~Dw~~----~leicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 34568964 3345555542 12334889999999997 68999999999999999999999997643 3466
Q ss_pred HH-HHHHhC---CCcHHHHHHHHHHHHHHHHhcCc
Q 000146 978 SD-ILKCLG---DNKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 978 p~-ll~~l~---D~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.. ++..+. +....|++-+...+..|....+.
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 66 566664 33458999999999999998753
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.70 E-value=8.3 Score=43.79 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=107.9
Q ss_pred hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000146 932 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDK 1010 (2052)
Q Consensus 932 ~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~-~l~D~k~~VR~aa~~aL~~i~~~~~l~~ 1010 (2052)
..+++........|..-.|+..|+.+|+.+ . ....+++.+.. .-.|..=-||..+..+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 356666666666777779999999977766 2 23557777776 5668888999999999999998788888
Q ss_pred hHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000146 1011 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1089 (2052)
Q Consensus 1011 ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~-~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~ 1089 (2052)
.++.+..-+.++ |+.+|..+.+.+... ...+........+.|++ ....|++.=||++..-.|..+.+.-+ +.+..
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rpW-~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRIW-TNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKI 215 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCSG-GGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHHH-hccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHH
Confidence 888888888877 689999888886532 22222222344455544 45699999999999999988776654 45666
Q ss_pred Hhcc
Q 000146 1090 NLKD 1093 (2052)
Q Consensus 1090 ~l~~ 1093 (2052)
++..
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 111
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.96 E-value=4.6 Score=45.97 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=70.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||.. +-.|-+++.. .+..-.+.+.+|++||+..|.+++..||.+|..+++..|..|... .+.++.
T Consensus 21 ~~~~dw~~----ileicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWES----ILQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 34568863 4445555542 123347899999999999999999999999999999999987643 233444
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+.+.++ .....|++-+.+.|..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4433333 2446788888888888887664
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=87.62 E-value=4.4 Score=45.97 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=91.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh-hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 977 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~-rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ll 977 (2052)
....+....+|..|+..|..+ . . ..+++..++. .-.|.+-.|+-.+...++.++...++. ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--------~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--------K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--------T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--------C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 334666789999999965443 1 2 2788899988 447899999999888888888755544 366
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHh----cCchhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 978 SDILKCLGDNKKHMRECTLTVLDAWLAA----VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 978 p~ll~~l~D~k~~VR~aa~~aL~~i~~~----~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
+.+..-+.|.+..||.+|.+++.-|... ...+.++|.|.....++ +--+|..+-.||..+
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~--s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDV--SEYVRKSVGNALRDI 205 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHH
Confidence 7888899999999999999998777654 23455666555555454 467899998888874
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.28 E-value=35 Score=39.41 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=106.3
Q ss_pred HHHhhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 896 TLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 896 ~ll~~l~d-~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+++..... .+ .+|.+.|..+++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. + ..++.
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~ 89 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLP 89 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHH
Confidence 34444433 34 69999999999987532 3556788888888877899999999999999888833 1 35788
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCccChhHHHHHHHHHHHHhccCCCCCchhhhH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll 1053 (2052)
.+++.+...+.|..+.|...++.|...++. .+...+. ++. .+..-..+|+++... +.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~---------~~l~~i~~~~~-~~~~~~~~W~~m~~l----------K~-- 147 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK---------NGLQYLCSLME-PGDSAEQAWNILSLI----------KA-- 147 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---------HHHHHHTTSSS-CCHHHHHHHHHHHHH----------HH--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHhcCCC-CcchHHHHHHHHHHH----------HH--
Confidence 888999999999999999988888887765 2333332 321 122346788887642 11
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1054 KPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1054 ~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
-++..++..+..||-.+.+.+..++
T Consensus 148 -~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 148 -QILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp -HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHccCCcchHHHHHHHHHHHH
Confidence 1344456678889988877665443
No 114
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.93 E-value=3.9 Score=42.90 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh--hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 439 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV--HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 439 ~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~--l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+..+.+..|..-++++||.+...++..|..|+++++.. |... -+.++..+.+++..+++.||+...+.+......++
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 34556666666788999999999999999999999764 2211 15566666777777899999999999999988887
Q ss_pred Ch
Q 000146 517 MR 518 (2052)
Q Consensus 517 e~ 518 (2052)
..
T Consensus 118 ~~ 119 (140)
T 3ldz_A 118 ND 119 (140)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 115
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.47 E-value=5.5 Score=42.90 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHh
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+..+.+..|..-++++||.+...++..|..|+++|+...-..+ -+.++..+++++.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 34556666666778999999999999999999999976422111 14466666666655 77899999999999988888
Q ss_pred CCh
Q 000146 516 GMR 518 (2052)
Q Consensus 516 Ge~ 518 (2052)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.45 E-value=23 Score=43.38 Aligned_cols=143 Identities=8% Similarity=0.116 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 986 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D 986 (2052)
.++.+.|..+++++-.. .|+.+.+++..+...-.|.+..|+...+.+|.+.+.. + ..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcC
Confidence 47999999999987632 4556788999998888999999999999999988863 2 34567788888888999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHH
Q 000146 987 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1066 (2052)
Q Consensus 987 ~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1066 (2052)
..+.|...++.|...++. .+...+.........-..+|+|+... +. -++..++..|..
T Consensus 112 ~d~~V~K~~I~~~tslYp---------l~f~~i~~~~~~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~G 169 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLYK---------VALQWMVKSRVISELQEACWDMVSAM----------AG---DIILLLDSDNDG 169 (386)
T ss_dssp SSHHHHHHHHHHHHHHHH---------HHHHHHHHC-CCCHHHHHHHHHHHHH----------HH---HHHHGGGCSSHH
T ss_pred CCHHHHHHHHHHHHHHHH---------HHHHHHhcCCCcchhHHHHHHHHHHH----------HH---HHHHHhccCCcc
Confidence 999999888888887653 33333332211123346788888752 11 134446667889
Q ss_pred HHHHHHHHHHHHH
Q 000146 1067 VRKAAEACIVEIL 1079 (2052)
Q Consensus 1067 VRkaA~~~L~~l~ 1079 (2052)
||-.+.+.+..++
T Consensus 170 Vrl~aiKFle~VI 182 (386)
T 3o2t_A 170 IRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9988887665443
No 117
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.77 E-value=12 Score=42.84 Aligned_cols=145 Identities=8% Similarity=-0.054 Sum_probs=95.7
Q ss_pred HHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcchh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH--
Q 000146 366 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-- 440 (2052)
Q Consensus 366 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-- 440 (2052)
++.|.+.|. |....+...|+.+|..++.+-...-.. .-...+|.|+..++...+.+++.+..||..+... +..-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHH
Confidence 445555666 444488888889999988653221111 1224679999999999999999999999999753 1111
Q ss_pred ----HHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc-------C---------CChH
Q 000146 441 ----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-------D---------GTPE 499 (2052)
Q Consensus 441 ----~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~-------D---------s~~~ 499 (2052)
...++.|...|. ++++.+++.+...|..+-....-. ....+.-+|.|+..+. | .+.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 124566777787 578999999887777754322111 1223445666665441 2 3679
Q ss_pred HHHHHHHHHHHHHH
Q 000146 500 VRDAAFSVLAAIAK 513 (2052)
Q Consensus 500 VR~aA~~~l~~l~~ 513 (2052)
|+..|..||..+..
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987753
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.68 E-value=8.3 Score=47.97 Aligned_cols=127 Identities=13% Similarity=0.177 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 442 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ 442 (2052)
..-+.++..++.|..+.|+..|++-|-.+|++ .++..+.-.|...+..-.+.-.+++.++|..++.. ....
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~ 134 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKG 134 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHH
Confidence 46677888888999999999999999988876 34666666777777777788899999999999985 3334
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHhhcCCCh
Q 000146 443 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDGTP 498 (2052)
Q Consensus 443 ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~l~Ds~~ 498 (2052)
.+..++..+.+....+|..++.||..-+...++..+.+-+. -++..+.+.|.|-..
T Consensus 135 tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 135 TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 44444444444468999999999998887765554433332 366677788866654
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.62 E-value=2.6 Score=47.78 Aligned_cols=98 Identities=15% Similarity=0.300 Sum_probs=70.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||..= -.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.++.
T Consensus 18 ~~~~dw~~~----leicd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPSI----LLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHHH----HHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHHH----HHHHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 345789753 335555542 122347899999999999999999999999999999999988643 233555
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+...++ .....|++.+.+.+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5444443 3456788888888888887654
No 120
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.55 E-value=3.6 Score=43.59 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC---cChHHHHhhhhhhhCC------CChhHHHHHHHHHHHHH
Q 000146 165 VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLELC 235 (2052)
Q Consensus 165 ~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~---i~~k~il~~l~~ll~~------~dk~VR~~a~~l~vely 235 (2052)
+...+..|.+.+.++||+++.-+|..|..++++=|... +.-+.|+..|.+++.. .+..||+....++.+-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999988732 4557899999999864 67899999999987777
Q ss_pred HhhC
Q 000146 236 RWIG 239 (2052)
Q Consensus 236 ~~lG 239 (2052)
...+
T Consensus 126 ~~f~ 129 (149)
T 3g2s_A 126 VGLP 129 (149)
T ss_dssp HHCT
T ss_pred HHhC
Confidence 6664
No 121
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.18 E-value=13 Score=39.26 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=73.8
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|.- ..+|..+++.. +..-.+.+++|+++|+..|+.|+..|+.+++.+.+--|..|... .+.++..|
T Consensus 14 l~~~dw~~----~leicD~I~~~---~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD---PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS---SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 45678854 44455544321 12346889999999999999999999999999999999999654 36788888
Q ss_pred HHHhccC------cHHHHHHHHHHHHHHHHh
Q 000146 411 LEKLKEK------KPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkdk------K~~V~~aa~~aL~ai~~~ 435 (2052)
...++.+ ...|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777652 578999999999999875
No 122
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=79.06 E-value=5 Score=42.67 Aligned_cols=99 Identities=16% Similarity=0.338 Sum_probs=72.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+.+.||. .+-.|.+++.. . +..-.+.+.+|++||.. .|.+++..||.++..+++.+|..|...+ +.|+
T Consensus 29 l~~~Dw~----~ileicD~In~--~---~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWG----QFMHICDIINT--T---QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHH----HHHHHHHHHHH--S---TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHH----HHHHHHHHHhC--C---CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 4556896 44455555552 1 22347899999999985 5899999999999999999999987653 3566
Q ss_pred HH-HHHHhCCC---cHHHHHHHHHHHHHHHHhcCc
Q 000146 978 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 978 p~-ll~~l~D~---k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.. ++..+.++ ...|++-+...+..|....+-
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 45555543 346999999999999987753
No 123
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=77.92 E-value=13 Score=42.39 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000146 403 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~--~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 474 (2052)
+...+|.|++.+....+ .++..+..++..++.. .... ...++.+...|++.++.++..++..|..+....+
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 34568888988877665 7777777788887754 1111 1346788888999999999999999988654322
Q ss_pred hhHHHHhh-hhHHHHHHHhhcC-CChHHHHHHHHHHHHHHH
Q 000146 475 KAAVLKVH-KDYVPICMECLND-GTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 475 ~~~l~~~l-~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~ 513 (2052)
.. -.... .--+|.|+++|.+ .+.++|+.|..+|+.+..
T Consensus 85 ~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 85 DN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 21 11111 2378999999974 689999999999998864
No 124
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.19 E-value=0.8 Score=52.91 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=78.3
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
+...+.+.+|..|.++...+ .. ..|...++|.+..|+..++.. +.. +
T Consensus 127 L~~L~~D~d~~VR~~aA~~l---------~~-------~~l~~l~~D~d~~VR~~aa~~-------l~~----------~ 173 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQRI---------PP-------GRLFRFMRDEDRQVRKLVAKR-------LPE----------E 173 (244)
T ss_dssp GGGGTTCSSHHHHHHHHHHS---------CG-------GGGGGTTTCSCHHHHHHHHHH-------SCG----------G
T ss_pred HHHHHcCCCHHHHHHHHHhc---------CH-------HHHHHHHcCCCHHHHHHHHHc-------CCH----------H
Confidence 33446788999999988732 11 134456679999999888764 111 2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
.+...++|....||.++...+ +. +.|...+++.+|+||..+..-+. .+.
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l---------~~----~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~ 222 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL---------RG----DDLLELLHDPDWTVRLAAVEHAS------------------LEA 222 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC---------CG----GGGGGGGGCSSHHHHHHHHHHSC------------------HHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC---------CH----HHHHHHHcCCCHHHHHHHHHcCC------------------HHH
Confidence 233456899999998877642 11 23445578999999998877643 134
Q ss_pred HHHhhcCCChHHHHHHHHHHH
Q 000146 489 CMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
+..+ .|.+..||.++.+.|+
T Consensus 223 L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 223 LREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHc-cCCCHHHHHHHHHHhC
Confidence 5555 9999999999987765
No 125
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.91 E-value=25 Score=38.04 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=73.5
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|.- +.+|..+++.. +..-.+.+++|+++|+..|+.|+..|+.+++.+.+--|..|... -+.++..|
T Consensus 26 l~~~Dw~~----ileicD~I~~~---~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 26 NRQEDWEY----IIGFCDQINKE---LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CSSCCHHH----HHHHHHHHHHS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 45688854 44555555321 22356889999999999999999999999999999999888643 34667777
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000146 411 LEKLKE------KKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkd------kK~~V~~aa~~aL~ai~~~ 435 (2052)
...++. ....|++-+.+.+..|...
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 777763 3478999999999999876
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.07 E-value=25 Score=43.88 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH
Q 000146 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 440 (2052)
Q Consensus 361 dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l 440 (2052)
+|..|+...+ .+.+.-..|++.|... -+.|......-+-++++.+.|....||..+...|-.+|+. ..+
T Consensus 30 ~y~~Il~~~k-----g~~k~K~LaaQ~I~kf----fk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i 98 (507)
T 3u0r_A 30 AYQVILDGVK-----GGTKEKRLAAQFIPKF----FKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL 98 (507)
T ss_dssp HHHHHHHGGG-----SCHHHHHHHHHHHHHH----GGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH
T ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh
Confidence 4555554332 2466677777776655 4567778889999999999999999999888888888765 568
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
..+.+.|..-|+...+.-...+-+-|..++...++..+...+..|.. ++..||+....-|..-..-++..
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHGGGSCTT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHHHHhhcchh
Confidence 88889888899988888888888888888888777776554444444 46899998877776666555543
No 127
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=71.66 E-value=36 Score=36.24 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHh--hhhHHHH-HHHhhc---CCChHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKV--HKDYVPI-CMECLN---DGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~--l~~l~p~-l~k~l~---Ds~~~VR~aA~~~l~~ 510 (2052)
.+..+.+..|..-++ ++||.+...++..|..|+++|++. |... -+.++.. +++++. ++...||+...+.+..
T Consensus 49 ~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~-fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 49 EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR-FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH-HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH-HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 456677777777887 589999999999999999999764 3221 2446665 667664 4567999999999999
Q ss_pred HHHHhCC
Q 000146 511 IAKSVGM 517 (2052)
Q Consensus 511 l~~~~Ge 517 (2052)
....++.
T Consensus 128 W~~~f~~ 134 (157)
T 1elk_A 128 WADAFRS 134 (157)
T ss_dssp HHHHHTT
T ss_pred HHHHcCC
Confidence 9888874
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=71.41 E-value=30 Score=39.26 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHH
Q 000146 437 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 437 ~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
..+..+.+..|..-++++||.+...+|..|..++++++...... .-+.++..|.++++ .+++.||+...+.+......
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 35567778888888899999999999999999999987642211 11344555555553 46789999999999999988
Q ss_pred hCCh
Q 000146 515 VGMR 518 (2052)
Q Consensus 515 ~Ge~ 518 (2052)
+...
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 8654
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.13 E-value=6.8 Score=40.95 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=70.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
+..++.+|-.=--.+++|.++.... ....+.+++..|-+||.|.+.+++.-||++|..|+..-...|...++.-+.
T Consensus 18 ~ATs~d~~~~pgylm~EIA~~T~~s----~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 18 AVTSDEDKVAPVYKLEEICDLLRSS----HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HTTCSCSSCCCHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 3445556655555677777766431 001247899999999999999999999999999997767777666555443
Q ss_pred HHHHHhC------------CCcHHHHHHHHHHHHHHHH
Q 000146 979 DILKCLG------------DNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 979 ~ll~~l~------------D~k~~VR~aa~~aL~~i~~ 1004 (2052)
. ++.+. |....||+.|.+++..+..
T Consensus 94 ~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 94 A-VRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp H-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred H-HHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 3 33332 2236799999888887754
No 130
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=66.31 E-value=7.1 Score=52.07 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 442 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 442 ~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
.++|-| .-|++.++..|..++..|..+++......+.-.-+.+.+.+..+|.|++.+||.+|..+|..|...-|.+..
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345533 457889999999999999998753211112112233556678899999999999999999999887776543
No 131
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.98 E-value=7 Score=40.84 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhc------
Q 000146 343 DAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK------ 415 (2052)
Q Consensus 343 eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk------ 415 (2052)
-.+++|..+.... . ..+.+|+..|.++|+|.+..|+..|+++|.+|+..-...|...++.-+.. +..+.
T Consensus 30 ylm~EIA~~T~~s---~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~~F~g~~ 105 (140)
T 1vdy_A 30 YKLEEICDLLRSS---HVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLFHYKGHP 105 (140)
T ss_dssp HHHHHHHHHHHHS---CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTTTCCCCC
T ss_pred HHHHHHHHHHHhc---chhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHHhcCCCC
Confidence 3456666655211 1 12578999999999999999999999999999976666665444433322 22221
Q ss_pred ------cCcHHHHHHHHHHHHHHHHh
Q 000146 416 ------EKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 416 ------dkK~~V~~aa~~aL~ai~~~ 435 (2052)
+....||+.|.+++..++..
T Consensus 106 dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 106 DPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp CTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred CcccccchhHHHHHHHHHHHHHHhCc
Confidence 22378999999999988764
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=65.88 E-value=1.8e+02 Score=34.66 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=123.2
Q ss_pred hhhcccCChHHHHHHHHHHHHHhcC---CCCCCCC----hHHHHHHHHHHhcCcCHHHHHHHH--HHHH--HHHHHhhhc
Q 000146 330 WEGVKATKWSERKDAVAELTKLAST---KRIAPGD----FTEVCRTLKKLITDVNIAVAVEAI--QAIG--NLARGLRTH 398 (2052)
Q Consensus 330 ~~~l~s~kWkeR~eaL~~L~~L~~~---~ki~~~d----y~~l~~~L~k~l~D~N~~V~~~A~--~~l~--~La~~L~~~ 398 (2052)
...+..-+|..|+++..-+..+... .+....+ -.+++..|.+.-.+..+..-...+ .|+. .+|+-+-.
T Consensus 84 i~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~- 162 (341)
T 1upk_A 84 VADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILW- 162 (341)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHH-
T ss_pred HHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhc-
Confidence 3345667899999999988877631 1211112 257778888877766654333331 2221 12221110
Q ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 399 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 399 f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
...+-.+++...-..=.|...|.+++..++... ..+.+.++..+..-+.+.|.-+|.+++.+|+.++
T Consensus 163 -----~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 163 -----SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp -----SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 011224445555555567777777777665430 1346777888877788999999999999999988
Q ss_pred Hhc-ChhHHHHhh--hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhc
Q 000146 471 ETS-SKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541 (2052)
Q Consensus 471 ~~~-~~~~l~~~l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~ 541 (2052)
..- ....+.+|+ ++-+..++.+|.|..+.++-.|+-.+-.+.. -+++. .++ ..+--.-|.|+-+++..
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA-NP~K~-~~I-~~IL~~Nr~kLl~fl~~ 308 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA-NPNKT-QPI-LDILLKNQAKLIEFLSK 308 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-CSSCC-HHH-HHHHHHTHHHHHHHHHH
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee-CCCCC-hHH-HHHHHHHHHHHHHHHHh
Confidence 643 233344555 4577889999999999999999888866653 33332 122 22222245566666654
No 133
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=64.53 E-value=48 Score=43.06 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-h--hhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 442 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-H--KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 442 ~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l--~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
+-++.|+..|+..+-.+|..+++.|..++.+.+.. ...+ + +.=++.|+.+|.|+...+|..|.-.|..+.+
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 44666777888999999999999999988765442 2222 2 4578999999999999999998888877664
No 134
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=63.48 E-value=4.3e+02 Score=36.44 Aligned_cols=441 Identities=15% Similarity=0.102 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh----hhHHhhhHHHHHHHHHh
Q 000146 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP----AVEKSSKGVLSDILKCL 984 (2052)
Q Consensus 909 R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~----~~~~~~~~llp~ll~~l 984 (2052)
+..-+..|-.++. ....+..+.++.+.+...+.|+++.-...|.++++.|..+... ..+..-.-+.|-+-+.+
T Consensus 486 ~v~l~k~lf~l~~---rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l 562 (997)
T 1vsy_5 486 NVSFFSLVILLIS---SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCL 562 (997)
T ss_dssp HHHHHHHHHHHHT---TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444544442 1122334577777777777888998899999999988766443 23344445666666677
Q ss_pred C-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH---h---c----CccChhHHHHHHHHHHHHhccCCCCCchhhhH
Q 000146 985 G-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL---T---D----AKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053 (2052)
Q Consensus 985 ~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L---~---~----~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll 1053 (2052)
. +-.+.....=..|+..+.....+..+-+ +.+.| . + .......|..++..+...+ .+... +...++
T Consensus 563 ~~~lt~et~~~W~~~i~~~~~~~DprR~~~-L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~-~wr~~-~~~~~l 639 (997)
T 1vsy_5 563 DYELNHDAFEIWSTLAWWLPAVVDLRRSKT-FFCHFINADGMFDRESDAATHQTSKIYMLRSILMSM-EFRAP-DVGKLF 639 (997)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHHSCGGGCHH-HHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHH-TTSSC-CCHHHH
T ss_pred hccCCchhHHHHHHHHHHHhcCCChhhhHH-HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHh-ccccc-cHHHHH
Confidence 6 4555544444456666666666655433 33333 1 0 1111235677776655444 24322 345555
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 1054 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNG 1133 (2052)
Q Consensus 1054 ~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2052)
..+. ++.....||++....|..+...-- .+... .....++....+.+... .+.. ..+..
T Consensus 640 ~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~----~~~~~----~~~~~l~~~~~~~~~~~---~~~~--------~~~~~ 698 (997)
T 1vsy_5 640 DELV--FDHPYDQVRQAVAKLLTTLVQNQS----NPSIS----DPTTLLEAERNDPDGLG---LPLK--------SVPEK 698 (997)
T ss_dssp HHCC--SCCSCHHHHHHHHHHHHHHHHTSC----CCCBS----CHHHHHHHHHSCSSSSC---CCSS--------CCCHH
T ss_pred HHHH--hCCChHHHHHHHHHHHHHHHHhhc----ccCCC----CHHHHHHhhcccccccc---Cccc--------cCcch
Confidence 5544 888999999999988877766541 11111 11122222111100000 0000 00000
Q ss_pred CCCCCC----CCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhh
Q 000146 1134 VSKHGN----RAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKY 1209 (2052)
Q Consensus 1134 ~~~~~~----~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~ 1209 (2052)
...... +-..-+... ..-.|... ...+..+.-.-+.+|-...-..-. ...+.++
T Consensus 699 ~~~~i~~~f~~l~~~~~~~-~~~~~~~~-----------------~~s~y~~~~kTvl~wl~~~l~~~~----~~~l~~~ 756 (997)
T 1vsy_5 699 VDAYIKKQFEIIKNLEDSV-VGLNPQQF-----------------IKTDYFYRTSTIFYWIKEMARGPN----KVLLVPY 756 (997)
T ss_dssp HHHHHHHHHHHHTGGGGTT-SSCCSTTT-----------------TTSHHHHHHHHHHHHHHHHSSGGG----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcc-cccCcccc-----------------chHHHHHHHHHHHHHHHHHhcCCC----ccchhhh
Confidence 000000 000000000 00000000 000011111113334222111000 0111222
Q ss_pred hhHHHHHhhcC-cCHHH--HHHHH--HHHHHhcCcChhhhHHHHHHHHHHHHHhhc-CccHHHHHHHHhhHHHHHHHHHh
Q 000146 1210 FREDLHRRLLS-TDFKK--QVDGL--EMLQKALPSIRKDIIEVLDILLRWFVLQFC-KSNTTCLLKVLEFLPELFDTLRD 1283 (2052)
Q Consensus 1210 ~~~~l~~~lfs-~D~k~--~l~al--~~L~~~l~~~~~~~i~~lDlllk~l~lr~~-dtN~~vl~k~Ld~l~~l~~~l~~ 1283 (2052)
++.-++-.+++ .+.++ .++.+ ..+-..++...- .-..+|.++.-+.-=.. ++|= +-..+|.|++.++ -.
T Consensus 757 ~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~-~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~---f~ 831 (997)
T 1vsy_5 757 LVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI-RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL---SA 831 (997)
T ss_dssp HTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC-CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH---HH
T ss_pred hHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH---HH
Confidence 22223333333 11111 12111 111222222110 01224445554422122 3444 6777888887653 34
Q ss_pred cCCCCCHHhHHhhhHHHHHhhCCCh-HHHHHHHHHHHHHHhhcC-CccccHHHH---Hhhh-c-----------CCChhh
Q 000146 1284 EGYSLTESEAAVFLPCLVEKSGHNI-EKVREKMRELTKQIVNFY-SATKTLPYI---LEGL-R-----------SKNNRT 1346 (2052)
Q Consensus 1284 ~~y~l~~~Ea~~~lp~Lv~K~Gd~k-~~vr~~v~~il~~~~~v~-p~skvf~~l---~~gl-~-----------sKN~r~ 1346 (2052)
+-+.|++.+-..++-.++.-++|+. -.||+....+|-.+.... +...+-.++ .+.+ + +|+-++
T Consensus 832 n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~ 911 (997)
T 1vsy_5 832 ELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIK 911 (997)
T ss_dssp HTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHH
T ss_pred HHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHH
Confidence 4577888887788888888899999 999999999998887666 533333332 2333 2 233368
Q ss_pred HHHHHHHHHHHHHhhCCCcccc---cchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChH
Q 000146 1347 RIECVDLVGFLIDHHGAEISGQ---LKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1404 (2052)
Q Consensus 1347 R~ecl~~l~~li~~~G~~~~~~---~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~ 1404 (2052)
|-.++--|+.+|..|...++.| +..|..+|.+..|..+ |++.+-.||..=.+-.-|.
T Consensus 912 rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 912 IHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp HHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence 8999999999999999986433 3567889999999665 9999999999866555443
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.25 E-value=48 Score=37.32 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=47.1
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 401 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 401 (2052)
+.+.+|.-- .+|..+++.. +..-.+.+++|+++|+..|+.|+..|+.+++.+.+.-|..|..
T Consensus 18 ~~~~dw~~~----leicd~i~~~---~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ 79 (220)
T 1dvp_A 18 RLEPDWPSI----LLICDEINQK---DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE 79 (220)
T ss_dssp CSSCCHHHH----HHHHHHHHTT---SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCcCHHHH----HHHHHhhcCC---CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH
Confidence 456788753 3455555321 2346789999999999999999999999999999988877754
No 136
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=59.68 E-value=85 Score=34.62 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=80.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 721 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~--pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~ 721 (2052)
++.+.+.+ ..|.+|++.|.. + .....-...+++|+... ..++ |..++...++++.+++.+-.-+...++
T Consensus 15 ~It~a~~~---~~r~~aL~sL~~---D-~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~lepYl 85 (196)
T 4atg_A 15 KILSMIKS---DMKDIAIECLEK---E-SGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFIDPYL 85 (196)
T ss_dssp HHHHHHTS---TTHHHHHHHHHH---C-SSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCCGGGH
T ss_pred HHHHHHHh---HHHHHHHHHHhc---C-CChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 34444444 458888888762 1 11111223344444321 0122 677888899999999998433567777
Q ss_pred HHHHHHHHHhhhc-----hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhh-CCCHHHHHHHHHHHH
Q 000146 722 VLCLLGISERVAD-----IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKD-HKNPKVLSEGILWMV 782 (2052)
Q Consensus 722 ~~il~~LveKlgd-----~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~-~KnpKv~~e~L~~L~ 782 (2052)
..++|.++.-+-. ..+|+-|.++|..++..++.. .|...+.+.+.+ .++.-.+-+++..|.
T Consensus 86 H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 86 HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS 158 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 7777776655433 358999999999999988752 344445555433 567777777776654
No 137
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=58.46 E-value=1.5e+02 Score=32.65 Aligned_cols=121 Identities=9% Similarity=0.159 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD------SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D------sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
..|.+|++.|+. ++.+ .+|++.|...+.+ .|..+....++.+..|...-.-.+++|+..++|++
T Consensus 23 ~~r~~aL~sL~~-----D~gL-----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~Lipsv 92 (196)
T 4atg_A 23 DMKDIAIECLEK-----ESGL-----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSL 92 (196)
T ss_dssp TTHHHHHHHHHH-----CSSC-----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCh-----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 348888888853 3444 4445544443322 13334444455555444443445899999999999
Q ss_pred HHHhCCCc---HHHHHHHHHHHHHHHHhcC--chh----hHHHHHHHHhcCccChhHHHHHHHHHH
Q 000146 981 LKCLGDNK---KHMRECTLTVLDAWLAAVH--LDK----MVPYVTTALTDAKLGAEGRKDLFDWLS 1037 (2052)
Q Consensus 981 l~~l~D~k---~~VR~aa~~aL~~i~~~~~--l~~----ll~~l~~~L~~~k~np~~R~~~l~~L~ 1037 (2052)
+.++-.++ ..+|+-|...|..++...+ ... ++..+..++.+++.+.....+++-.|.
T Consensus 93 LtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 93 LTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS 158 (196)
T ss_dssp HHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99883211 1699999999999998875 222 333444444443323444555554444
No 138
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=57.91 E-value=17 Score=38.50 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHhCCC---CcChHHHHhh-hhhhhCC---CChhHHHHHHHHHHHHH
Q 000146 164 AVDVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKM-LPELFDH---QDQNVRASSKGLTLELC 235 (2052)
Q Consensus 164 ~~~~v~e~Ll~~l~~-K~PKvv~~~l~~L~~~l~~FG~~---~i~~k~il~~-l~~ll~~---~dk~VR~~a~~l~vely 235 (2052)
.+...+..|.+.+.+ +||+++.-+|..|..++++=|.. .+.-+.++.. |.+++.. ....||+....++.+-.
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 356677788888874 79999999999999999987773 2445678864 7888764 34589999999987777
Q ss_pred HhhC
Q 000146 236 RWIG 239 (2052)
Q Consensus 236 ~~lG 239 (2052)
...+
T Consensus 130 ~~F~ 133 (152)
T 3rru_A 130 QGFP 133 (152)
T ss_dssp TCCS
T ss_pred HHhC
Confidence 6664
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=49.89 E-value=2.1e+02 Score=34.18 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=82.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh--HHHHhh
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKA-----GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA--AVLKVH 482 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~-----~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l 482 (2052)
|+.-..+...+...-+..|+..++.+ +-.+-..++..|...+.++.+.|=+.++..|..++...... .+....
T Consensus 165 Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av 244 (339)
T 3dad_A 165 LIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAV 244 (339)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHH
Confidence 33334444666777777777777765 11112456667777777888999999999999988765321 111111
Q ss_pred h--------hHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHhCChh-HHHhHhhccHHHHH-HHHHHHh
Q 000146 483 K--------DYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRN-KLSEMIA 540 (2052)
Q Consensus 483 ~--------~l~p~l~k~l~---Ds~~~VR~aA~~~l~~l~~~~Ge~~-~~~~l~~Ld~~k~k-kI~e~~~ 540 (2052)
. .....+++.|. .++.++.-.|...+-.+....+++. +..+++.|...... .|...+.
T Consensus 245 ~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 245 NSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence 1 11346777776 6899999999999988888877544 66666666544443 3444443
No 140
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=47.98 E-value=7.4e+02 Score=34.42 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=58.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCC---C----ChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhh--HH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQP---A----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV--EK 971 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~---~----~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~--~~ 971 (2052)
+.+++-.+...|...+..+++.+...+.. + .+.+++..+.....+-...-+..-.+.++.++.+.+... ..
T Consensus 575 m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~ 654 (1073)
T 3gjx_A 575 MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEH 654 (1073)
T ss_dssp TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 33334445667888899999887555422 1 135666666666666666666677788999999998754 56
Q ss_pred hhhHHHHHHHHHhC
Q 000146 972 SSKGVLSDILKCLG 985 (2052)
Q Consensus 972 ~~~~llp~ll~~l~ 985 (2052)
++..++++.+..+.
T Consensus 655 ~i~~Lm~~~~~~w~ 668 (1073)
T 3gjx_A 655 LIEKYMLLPNQVWD 668 (1073)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888777653
No 141
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=46.42 E-value=96 Score=31.69 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---HHH
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---AVL 479 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---~l~ 479 (2052)
.+.-+-..|..+..++..+.....=|+. + ...-+.|++.+...++.-.+.-|...+=++..++.++... .+.
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~----h-~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIE----N-KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHH----T-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHH----h-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 3344556667777777777655544443 3 3345778888888887777777877777777777765332 233
Q ss_pred HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 480 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 480 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
+.+..++|.+...+. ++++|..-.+++...-
T Consensus 81 ~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 81 ESFADVLPEAAALVK--DPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHHTTHHHHHHTTC--STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhc
Confidence 333444444444443 4567777666665443
No 142
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=45.87 E-value=1.1e+02 Score=37.48 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=112.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
+.+.+.+.+=+||.---.-|..+-+ |+. ++. .+-..+.+.+- +.+..-+...+.+++.+.+|+...+...
T Consensus 179 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 179 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHH--HCG--GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4455688999998765555554421 000 121 22233444444 4455567788999999999987555433
Q ss_pred hhh-HHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 403 SRF-LLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 403 ~~~-llp~LL~klkdkK~~-V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
++. +...|+-..+-+.-. -...+..|+..++...+.-...++..|+...---|++=..--++.|..+++..++..+.+
T Consensus 255 hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~ 334 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 334 (392)
T ss_dssp HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 333 455566666665533 355777888888877222234556666555444444444456777888899888888988
Q ss_pred hhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 481 VHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 481 ~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
....+...+.+|++..+-.|-+.|.
T Consensus 335 i~~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 335 IMEPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999999966654
No 143
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=44.47 E-value=2.5e+02 Score=33.37 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhc-------cCcHHHHHHHHHHHHHHHHhcCCC---------HHHHHHH
Q 000146 383 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-------EKKPTVAESLTQTLQAMHKAGCLN---------LVDVVED 446 (2052)
Q Consensus 383 ~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk-------dkK~~V~~aa~~aL~ai~~~~~~~---------l~~ll~~ 446 (2052)
+.+.++..+.+.++..+.+++..++..+++..- +.-|..|..-..-|.++..+ |.+ +..+++.
T Consensus 93 eVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~-cF~al~~lp~~~fklvids 171 (321)
T 1w9c_A 93 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSH-CFPAFLAIPPTQFKLVLDS 171 (321)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHH-CTTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHH
Confidence 446777778888888888888888888777653 24588999999999999887 654 3567788
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhcCh-hH-----HHHhhhhHHHHHHHhhcCCC
Q 000146 447 VKTSVKNKVPLVRSLTLNWVTFCIETSSK-AA-----VLKVHKDYVPICMECLNDGT 497 (2052)
Q Consensus 447 l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~-----l~~~l~~l~p~l~k~l~Ds~ 497 (2052)
|.=+.+|-++.|-...+..+..++.+... .. ...++-.++..+...+.|++
T Consensus 172 iiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 172 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 88889999999999999999888876531 11 12344555555666666665
No 144
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=44.25 E-value=2.5e+02 Score=34.36 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=111.6
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHH-----HHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchh-
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTE-----VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG- 401 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~-----l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~- 401 (2052)
+.+.+.|.+=+||.-.-.-|..+-+. +. ++.. +-..+...+- ..+..-+..-+.++|.+.+|+......
T Consensus 134 Ll~lfdSeDprER~~LktiLhrIY~k--f~--~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 134 LLELFDSEDPRERDFLKTTLHRIYGK--FL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHH--CH--HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHHh--hh--hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 44567889999987655555544210 00 0111 1122333332 333445677889999999998755543
Q ss_pred hhhhHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 402 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 402 ~~~~llp~LL~klkdkK~~-V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
+..-+...|+-..+-+.-. -...+..|+..++...+.-...++..|+...-.-|++=..--++-+..+++..++..+.+
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~ 289 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 289 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3334556666666666543 347788899988887222234566666655555555545556677778888888888888
Q ss_pred hhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 481 VHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 481 ~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
....+...+.+|+...+-.|-+.|.
T Consensus 290 i~~~lf~~la~ci~S~hfqVAErAL 314 (403)
T 3fga_B 290 IMEPLFRQLAKCVSSPHFQVAERAL 314 (403)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 8899999999999999999966654
No 145
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=42.51 E-value=90 Score=32.70 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh------HHHHh
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA------AVLKV 481 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~------~l~~~ 481 (2052)
-..|+-|.|.|+.+.....+.|..++....-.-..|++.+...++.-.|.-|...+=.+..+++++... .+.+.
T Consensus 8 ~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~ 87 (145)
T 3d9j_A 8 NSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPR 87 (145)
T ss_dssp HHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHH
Confidence 345666777664455556666666665412234677777777777667888888887887877766432 23322
Q ss_pred h-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHhCChhHHH
Q 000146 482 H-KDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLER 522 (2052)
Q Consensus 482 l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~--~~~Ge~~~~~ 522 (2052)
+ +.|.+.+..+. ...+++|..-.+.+.+.. .+++.+.+.+
T Consensus 88 F~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~ 130 (145)
T 3d9j_A 88 FSNNIISTFQNLY-RCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 130 (145)
T ss_dssp HHHHHHHHHHHHT-SSCGGGHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 2 22333333333 455899988888877665 3555444433
No 146
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=42.14 E-value=1.5e+02 Score=31.04 Aligned_cols=92 Identities=4% Similarity=0.039 Sum_probs=62.6
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcC
Q 000146 416 EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 495 (2052)
Q Consensus 416 dkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~D 495 (2052)
.+++.+.....-|+.. ...-..|++.+...+..-+|.-|...+=.+..+++++......-+-+.+.+.+......
T Consensus 22 nSk~~I~~LT~~a~~~-----~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~ 96 (144)
T 1sz9_A 22 NSRPIITTLTKLAEEN-----ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL 96 (144)
T ss_dssp CCHHHHHHHHHHHHHT-----GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh
Confidence 5556665433333332 23457788888888887788999999999999998876543222335566666677666
Q ss_pred CChHHHHHHHHHHHHHH
Q 000146 496 GTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 496 s~~~VR~aA~~~l~~l~ 512 (2052)
.++.+|..-.+++.+..
T Consensus 97 ~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 97 VDNTTRTKLINMFKLWL 113 (144)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78899888888776655
No 147
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=39.65 E-value=2.8e+02 Score=32.96 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=53.7
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHH---HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 453 NKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 453 ~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+..|.-|.+-..+|..+..+|-..-+. ...+.++..++=+..++.++|-+.|..++-.+.+-+.
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 456999999999999999887655433 4458889999999999999999999999988887774
No 148
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=38.93 E-value=2.1e+02 Score=40.03 Aligned_cols=162 Identities=10% Similarity=0.070 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHHHHHhc--c-ccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000146 905 DWKVRLESIEAVNKILEEA--N-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 981 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a--~-~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll 981 (2052)
++..|..++-.+..++... + ....+.....+...|...+...+..-+..+|++||.+.. ...++.+.
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~ 477 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQ 477 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHH
Confidence 5677888888888888642 1 111112235556666666655556667778887776542 12344444
Q ss_pred HHhC-------CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 982 KCLG-------DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 982 ~~l~-------D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..+. +....||.+|+.+|..+... ....+-+.+...+.+...++++|..++..|.+. .+ . ...+.
T Consensus 478 ~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P---~-~~~l~ 549 (1056)
T 1lsh_A 478 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KP---S-VALVS 549 (1056)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CC---C-HHHHH
T ss_pred HhhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---Cc---C-HHHHH
Confidence 4432 22356889999999988642 234566778888876655799999988877542 11 1 33444
Q ss_pred HHHhhc-CCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1055 PASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1055 pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
-+...+ .|++..|+......|..+...-.+
T Consensus 550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 550 MVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 455554 779999999888877766655443
No 149
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=38.76 E-value=9.8e+02 Score=33.17 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=75.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-------chHHHHHHHHHHHHHHHHHhChh
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-------SNKNLVMATLITLGAVASAMGPA 968 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-------sN~~V~~~Al~~l~~la~alg~~ 968 (2052)
.+.+.++..+..++.-+|..|+.+= ..+.++.|...+.. ....|+..|+..+..++.
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----- 507 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----- 507 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-----
T ss_pred HHHHHHhcCChHHHHHHHHHhhccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-----
Confidence 3444455556666777777776542 12345566665531 234577778777766652
Q ss_pred hHHhhhHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 969 VEKSSKGVLSDILKCL--GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 969 ~~~~~~~llp~ll~~l--~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.+-+.+-+.++..+ ......||-+| +..++...+...++..|...+.... |.+++.-+...|...
T Consensus 508 --~~p~~v~~il~~i~~n~~e~~EvRiaA---~~~Lm~t~P~~~~l~~ia~~l~~E~-~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 508 --RDPRKVQEIVLPIFLNVAIKSELRIRS---CIVFFESKPSVALVSMVAVRLRREP-NLQVASFVYSQMRSL 574 (1056)
T ss_dssp --TCHHHHHHHHHHHHHCTTSCHHHHHHH---HHHHHHTCCCHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred --hchHHHHHHHHHHhcCCCCChHHHHHH---HHHHHHHCcCHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHH
Confidence 22334455566666 44667799886 4445666676778888888888653 678888877777653
No 150
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=38.66 E-value=5.7e+02 Score=30.45 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=82.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhc--cccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a--~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
.|++.....+...-.=+|..+.+++... -..|-. . .+++.-|...++..+..|++.|+.+|..++..--..+.-..
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 3455555567777777888888887530 001111 1 45677777777778899999999999999877643332221
Q ss_pred hH-----------HHHHHHHHhC---CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000146 974 KG-----------VLSDILKCLG---DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 1022 (2052)
Q Consensus 974 ~~-----------llp~ll~~l~---D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 1022 (2052)
+. .+..++..|. .....+...+..-++++...++-..-...+...|...
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~ 304 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQ 304 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHc
Confidence 11 1456777776 5778888889999999988877544445666667643
No 151
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=38.39 E-value=2.5e+02 Score=33.54 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=96.2
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcch
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 400 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~----~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 400 (2052)
.|++-+.......=-+|...+..+. .++.+. ..+|..++..+.+++...|-...+.+++.||.|--. --.-+.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~ 247 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 247 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHH
Confidence 4666677777877788888888865 443332 358999999999999999999999999999998642 111234
Q ss_pred hhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 401 GSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 401 ~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
.|+ ..-+..++..++|+.++|+-.|.....-++.+ ......|...|.. + |.-.+.||..+.
T Consensus 248 ~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN-P~K~~~I~~IL~~---N-----r~kLl~fl~~f~ 310 (341)
T 1upk_A 248 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN-PNKTQPILDILLK---N-----QAKLIEFLSKFQ 310 (341)
T ss_dssp HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC-SSCCHHHHHHHHH---T-----HHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC-CCCChHHHHHHHH---H-----HHHHHHHHHhCC
Confidence 553 35678889999999999999999999988887 4455666665532 1 334455665544
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=38.14 E-value=2.1e+02 Score=35.71 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=110.9
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT-----EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~-----~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
+.+.+.+.+=+||.-.-.-|..+-+ |+. ++. .+-..+...+- ..+..-+.+.+.++|.+.+|+.-.+...
T Consensus 167 Ll~lfdSeDpRERd~LktiLhrIY~--Kf~--~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 167 LLELFDSEDPRERDFLKTTLHRIYG--KFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHH--SCT--TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4455688999998765555555432 111 122 22223333333 3344457788899999999876555433
Q ss_pred hh-hHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 403 SR-FLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 403 ~~-~llp~LL~klkdkK~~-V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
++ -+...|+-..+-+.-. -...+..|+..++...+.-...++..|+...---|++=..--++.|..+++..++..+.+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~ 322 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 322 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33 3455666666666533 355778888888887222234566666555444455444455677778888888888888
Q ss_pred hhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 481 VHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 481 ~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
.+..+...+.+|++..+-.|-+.|.
T Consensus 323 i~~~lF~~la~ci~S~hfqVAErAL 347 (449)
T 2npp_B 323 IMEPLFRQLAKCVSSPHFQVAERAL 347 (449)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999999999966654
No 153
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=27.68 E-value=7.1e+02 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.3
Q ss_pred hhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHhC
Q 000146 483 KDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 483 ~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
..++..+...+. +-.++|.++=.++++.+...+.
T Consensus 245 ~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~ 279 (283)
T 1c7c_A 245 HCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLT 279 (283)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 445555666664 6778888888888888877654
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=24.70 E-value=1.6e+02 Score=36.81 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHHhcChhHH-HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 455 VPLVRSLTLNWVTFCIETSSKAAV-LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 455 np~vR~~~l~~L~~~l~~~~~~~l-~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+|.+-.=++.=++.++..+|.... ...+ ..-..++++|++.+++||..|..|+..+|..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 455555666666666666654321 1111 1356788999999999999999999988753
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=24.65 E-value=2.2e+02 Score=35.71 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=55.7
Q ss_pred ccCCCCChhhHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHH
Q 000146 925 KRIQPAGTGELFGGLRGRLY----------DSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMR 992 (2052)
Q Consensus 925 ~~I~~~~~~eL~~aL~~rL~----------DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR 992 (2052)
.++..++ .++++.|.+.|. +.++.+...||.-||++++..+..- ..+.. .=..+++.+.+.++.||
T Consensus 387 ~kf~e~~-~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 387 DEFKKDN-YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp GGGSSGG-GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHhcc-hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCCHHHH
Confidence 3344444 677777777774 2478899999999999998875431 12222 23466778888999999
Q ss_pred HHHHHHHHHHHHh
Q 000146 993 ECTLTVLDAWLAA 1005 (2052)
Q Consensus 993 ~aa~~aL~~i~~~ 1005 (2052)
-.|..|+..|+.+
T Consensus 465 ~~AL~avQklm~~ 477 (480)
T 1ho8_A 465 YEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888754
No 156
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.53 E-value=3.3e+02 Score=28.57 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHhh---c
Q 000146 381 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVED---VKTSVK---N 453 (2052)
Q Consensus 381 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~~~~l~~ll~~---l~~~L~---~ 453 (2052)
..+|++||..|.. + .|+..++..++...=|++ ...++.+...|..++..+-.+.+++... ++..+. -
T Consensus 25 ~~EA~~cl~EL~~---p---~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~l 98 (152)
T 2ion_A 25 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 98 (152)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhcc
Confidence 5788999988741 2 344555656666555664 6788999999998886534566666443 333333 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000146 454 KVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 454 Knp~vR~~~l~~L~~~l~~ 472 (2052)
..|........|+.+++..
T Consensus 99 DiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 99 DVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 4688888888888888864
No 157
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=24.24 E-value=1.8e+02 Score=30.21 Aligned_cols=104 Identities=9% Similarity=0.038 Sum_probs=57.6
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcCh---hHH
Q 000146 404 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSK---AAV 478 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~---~~l 478 (2052)
..-+-..|..+.+++..|+.+..=++ .+ ....+.+++.+...+... ++.-|...+=++..++.++.. ..+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l----~h-~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f 79 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLL----LQ-YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF 79 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHH----TC-GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH----Hh-hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH
Confidence 34455667777777776654433333 22 344577788887777755 456666666555666665432 122
Q ss_pred HHhhhh-HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l~~-l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
...+.. +.+++..+....++++|..-.+++...-
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWe 114 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILK 114 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 222222 2222223333457888888777776553
No 158
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.91 E-value=3.6e+02 Score=27.42 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHhh---c
Q 000146 381 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVED---VKTSVK---N 453 (2052)
Q Consensus 381 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~~~~l~~ll~~---l~~~L~---~ 453 (2052)
..+|++|+..|.. + .|+..++...+...=|++ ...++.+...|..++..+-.+.+++... +...+. -
T Consensus 23 ~~Ea~~cl~eL~~---p---~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~l 96 (129)
T 2nsz_A 23 ISEAEHCLKELEV---P---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINL 96 (129)
T ss_dssp HHHHHHHHHHHTC---G---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---C---ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhc
Confidence 5688999988741 2 344556666666666665 4788999999988886544666666443 333333 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 000146 454 KVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 454 Knp~vR~~~l~~L~~~l~~ 472 (2052)
..|........|+.+++..
T Consensus 97 DiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 97 DVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HSTTHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHHC
Confidence 4688898889999888864
No 159
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.14 E-value=9.9e+02 Score=27.91 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCCC----C-CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHH-hh-hcchhhhhhHHHHHH
Q 000146 340 ERKDAVAELTKLASTKRIA----P-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG-LR-THFSGSSRFLLPVLL 411 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~----~-~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~-L~-~~f~~~~~~llp~LL 411 (2052)
.|.-+|+-++-++-.|... . .+-..++..+...+. +.++..+..+++++..+... .+ .-+-.+...++..+.
T Consensus 118 ~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~ 197 (304)
T 3ebb_A 118 IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAI 197 (304)
T ss_dssp TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 4666777666443222211 1 122466667777776 55665566666665554431 11 112223344555555
Q ss_pred HHhccCcHHHHHHHHHHHHHHHH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHK 434 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~ 434 (2052)
..+...+++++-++...+-++..
T Consensus 198 ~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 198 ELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHHH
Confidence 44455566666666555555543
Done!