Query 000149
Match_columns 2037
No_of_seqs 413 out of 1427
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 20:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0890 Protein kinase of the 100.0 2E-251 3E-256 2455.4 134.4 1806 20-1988 444-2280(2382)
2 KOG0892 Protein kinase ATM/Tel 100.0 2.8E-90 6.1E-95 921.2 83.2 1253 606-2013 1296-2716(2806)
3 KOG0889 Histone acetyltransfer 100.0 5.1E-70 1.1E-74 740.5 66.0 930 913-1988 2341-3445(3550)
4 KOG0891 DNA-dependent protein 100.0 1.5E-70 3.2E-75 756.1 45.4 871 1038-1988 1220-2200(2341)
5 COG5032 TEL1 Phosphatidylinosi 100.0 7.2E-58 1.6E-62 650.0 84.6 397 1590-2020 1634-2046(2105)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 5.7E-56 1.2E-60 526.5 24.3 262 1750-2012 1-271 (279)
7 cd05169 PIKKc_TOR TOR (Target 100.0 4.8E-55 1E-59 521.0 22.2 256 1750-2010 1-270 (280)
8 cd05170 PIKKc_SMG1 Suppressor 100.0 1.4E-54 3E-59 520.2 25.3 260 1750-2009 1-296 (307)
9 cd05172 PIKKc_DNA-PK DNA-depen 100.0 1.7E-53 3.6E-58 492.1 21.9 217 1750-2009 1-224 (235)
10 cd05163 TRRAP TRansformation/t 100.0 2.5E-53 5.4E-58 495.8 22.5 217 1750-1998 1-224 (253)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.5E-52 3.2E-57 485.4 22.6 220 1750-2009 1-226 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 5.6E-51 1.2E-55 468.2 22.1 204 1750-2001 1-207 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 7.9E-48 1.7E-52 443.1 22.5 210 1750-2010 1-216 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 1.2E-47 2.6E-52 464.3 24.0 238 1745-2021 54-304 (352)
15 cd05166 PI3Kc_II Phosphoinosit 100.0 6.1E-47 1.3E-51 456.9 24.4 237 1745-2021 54-305 (353)
16 cd05165 PI3Kc_I Phosphoinositi 100.0 9.7E-47 2.1E-51 454.1 23.3 240 1744-2021 58-317 (366)
17 cd05168 PI4Kc_III_beta Phospho 100.0 6.8E-47 1.5E-51 446.0 19.3 223 1763-2028 15-248 (293)
18 cd05177 PI3Kc_C2_gamma Phospho 100.0 4E-46 8.6E-51 447.1 23.8 238 1745-2022 55-307 (354)
19 cd00896 PI3Kc_III Phosphoinosi 100.0 4E-46 8.7E-51 450.0 23.8 234 1743-2028 56-306 (350)
20 cd00894 PI3Kc_IB_gamma Phospho 100.0 5E-46 1.1E-50 446.2 23.8 238 1745-2021 60-316 (365)
21 cd05174 PI3Kc_IA_delta Phospho 100.0 1.3E-45 2.8E-50 442.1 24.1 239 1745-2021 58-312 (361)
22 cd05176 PI3Kc_C2_alpha Phospho 100.0 5.5E-45 1.2E-49 434.8 23.7 237 1745-2021 54-305 (353)
23 cd05173 PI3Kc_IA_beta Phosphoi 100.0 2E-44 4.3E-49 433.6 23.6 241 1744-2022 57-313 (362)
24 cd05167 PI4Kc_III_alpha Phosph 100.0 6.1E-44 1.3E-48 422.9 24.3 229 1745-2020 5-260 (311)
25 smart00146 PI3Kc Phosphoinosit 100.0 1.1E-43 2.4E-48 404.1 19.4 192 1780-2021 1-199 (202)
26 cd00893 PI4Kc_III Phosphoinosi 100.0 7.7E-44 1.7E-48 419.4 18.3 217 1757-2020 8-238 (289)
27 cd00895 PI3Kc_C2_beta Phosphoi 100.0 7.5E-43 1.6E-47 416.6 25.0 237 1745-2021 55-306 (354)
28 cd05175 PI3Kc_IA_alpha Phospho 100.0 1.7E-42 3.6E-47 413.7 23.2 238 1745-2021 58-317 (366)
29 PF02259 FAT: FAT domain; Int 100.0 2E-41 4.3E-46 417.6 32.8 341 1186-1552 1-352 (352)
30 PF00454 PI3_PI4_kinase: Phosp 100.0 1.1E-39 2.3E-44 381.2 16.8 221 1778-2016 1-231 (235)
31 KOG0903 Phosphatidylinositol 4 100.0 2.3E-35 5E-40 362.2 16.8 214 1763-2021 570-795 (847)
32 KOG0906 Phosphatidylinositol 3 100.0 2.6E-30 5.7E-35 311.5 25.5 399 1527-2001 309-768 (843)
33 KOG0905 Phosphoinositide 3-kin 100.0 5E-30 1.1E-34 322.3 24.4 364 1579-2012 906-1291(1639)
34 KOG0902 Phosphatidylinositol 4 100.0 2E-29 4.4E-34 323.0 25.0 367 1581-2020 1354-1751(1803)
35 KOG0904 Phosphatidylinositol 3 100.0 1.8E-27 3.8E-32 295.0 22.1 360 1581-2001 629-1006(1076)
36 PTZ00303 phosphatidylinositol 99.9 6E-24 1.3E-28 257.5 17.6 159 1765-1980 1027-1196(1374)
37 smart00802 UME Domain in UVSB 99.9 1.4E-24 3.1E-29 219.8 9.3 103 488-593 1-106 (107)
38 PF08064 UME: UME (NUC010) dom 99.9 4.2E-23 9.2E-28 211.1 9.4 103 488-593 1-106 (107)
39 COG5032 TEL1 Phosphatidylinosi 98.7 3.7E-06 8E-11 123.7 31.6 562 1041-1662 1019-1613(2105)
40 TIGR02917 PEP_TPR_lipo putativ 98.4 0.0055 1.2E-07 84.7 48.4 153 1044-1209 129-287 (899)
41 KOG2171 Karyopherin (importin) 98.3 0.0017 3.7E-08 87.5 37.5 474 148-740 37-548 (1075)
42 TIGR02917 PEP_TPR_lipo putativ 98.2 0.0032 6.9E-08 87.0 41.3 410 1044-1559 469-886 (899)
43 PRK11447 cellulose synthase su 98.0 0.033 7.1E-07 80.6 44.6 382 1121-1558 276-685 (1157)
44 PRK10049 pgaA outer membrane p 98.0 0.02 4.3E-07 79.2 40.8 385 1086-1543 15-427 (765)
45 PRK11447 cellulose synthase su 97.9 0.012 2.6E-07 84.9 38.1 371 1045-1497 274-681 (1157)
46 TIGR00990 3a0801s09 mitochondr 97.8 0.024 5.2E-07 76.5 35.1 89 1117-1207 130-218 (615)
47 KOG2076 RNA polymerase III tra 97.7 0.0066 1.4E-07 80.1 27.1 326 1046-1408 145-510 (895)
48 TIGR00990 3a0801s09 mitochondr 97.7 0.091 2E-06 71.0 38.4 49 1122-1170 168-216 (615)
49 PRK15174 Vi polysaccharide exp 97.7 0.033 7.2E-07 75.6 34.0 346 1045-1501 47-401 (656)
50 PRK11788 tetratricopeptide rep 97.5 0.045 9.7E-07 69.1 29.7 272 1121-1490 42-319 (389)
51 KOG1824 TATA-binding protein-i 97.5 0.36 7.9E-06 64.3 36.4 446 200-739 95-597 (1233)
52 PRK15174 Vi polysaccharide exp 97.4 0.065 1.4E-06 72.9 31.3 309 1120-1497 48-362 (656)
53 PRK11788 tetratricopeptide rep 97.4 0.12 2.6E-06 65.2 31.5 118 1045-1174 40-167 (389)
54 PRK09782 bacteriophage N4 rece 97.3 0.44 9.6E-06 67.2 37.0 356 1044-1541 380-743 (987)
55 PRK10747 putative protoheme IX 97.1 0.18 3.9E-06 64.5 28.9 61 1349-1409 328-389 (398)
56 PRK10049 pgaA outer membrane p 97.1 0.86 1.9E-05 63.4 37.3 381 1047-1497 22-437 (765)
57 PF10508 Proteasom_PSMB: Prote 97.1 0.14 2.9E-06 67.5 27.9 170 152-341 43-213 (503)
58 KOG4626 O-linked N-acetylgluco 96.9 1.2 2.6E-05 57.2 31.6 414 1039-1557 47-509 (966)
59 TIGR00540 hemY_coli hemY prote 96.7 1.6 3.5E-05 56.1 33.0 291 1047-1409 91-398 (409)
60 PF01602 Adaptin_N: Adaptin N 96.7 2.4 5.1E-05 56.2 35.0 447 148-739 61-522 (526)
61 KOG2023 Nuclear transport rece 96.6 4.5 9.7E-05 52.9 39.7 102 193-308 94-201 (885)
62 PF11865 DUF3385: Domain of un 96.4 0.006 1.3E-07 67.9 6.8 92 707-802 10-120 (160)
63 PRK10747 putative protoheme IX 96.3 2.3 4.9E-05 54.6 30.5 111 1349-1500 263-374 (398)
64 KOG2171 Karyopherin (importin) 96.2 7.5 0.00016 54.1 34.8 280 485-800 146-463 (1075)
65 PLN03200 cellulose synthase-in 96.2 4.3 9.3E-05 60.5 34.3 464 161-717 417-933 (2102)
66 PTZ00429 beta-adaptin; Provisi 96.1 11 0.00023 52.1 39.1 144 144-312 65-210 (746)
67 TIGR00540 hemY_coli hemY prote 95.8 4.2 9.2E-05 52.3 29.4 290 1117-1500 87-383 (409)
68 PLN03081 pentatricopeptide (PP 95.4 3.2 6.9E-05 57.2 28.0 333 1041-1409 190-556 (697)
69 KOG1242 Protein containing ada 95.3 12 0.00026 49.2 30.1 394 145-585 53-462 (569)
70 PF01602 Adaptin_N: Adaptin N 95.1 10 0.00022 50.2 30.4 56 250-308 51-106 (526)
71 PLN03218 maturation of RBCL 1; 95.1 23 0.0005 51.0 35.0 327 1043-1409 440-782 (1060)
72 KOG1241 Karyopherin (importin) 95.1 7 0.00015 52.1 27.0 356 199-589 373-786 (859)
73 PRK14574 hmsH outer membrane p 94.7 29 0.00063 48.7 38.9 124 1045-1180 39-168 (822)
74 PF14559 TPR_19: Tetratricopep 94.7 0.08 1.7E-06 49.5 6.5 55 1126-1180 3-57 (68)
75 KOG0213 Splicing factor 3b, su 94.5 24 0.00053 46.9 32.1 335 139-593 503-851 (1172)
76 KOG1062 Vesicle coat complex A 94.5 6.6 0.00014 52.6 24.8 37 272-308 98-134 (866)
77 PLN03218 maturation of RBCL 1; 94.4 28 0.00061 50.1 33.1 305 1043-1385 475-791 (1060)
78 KOG0547 Translocase of outer m 94.2 14 0.00029 47.4 25.3 65 1120-1184 121-185 (606)
79 KOG4626 O-linked N-acetylgluco 94.1 0.44 9.5E-06 61.0 12.7 188 1306-1542 118-319 (966)
80 TIGR02521 type_IV_pilW type IV 94.1 3.1 6.8E-05 47.2 19.3 152 1045-1209 36-195 (234)
81 PLN03200 cellulose synthase-in 94.0 42 0.00091 50.8 33.5 407 253-714 458-886 (2102)
82 PF13429 TPR_15: Tetratricopep 94.0 0.39 8.6E-06 58.1 12.1 254 1091-1409 13-276 (280)
83 TIGR02521 type_IV_pilW type IV 93.5 2.1 4.5E-05 48.7 16.4 151 1044-1207 69-227 (234)
84 PLN03077 Protein ECB2; Provisi 93.4 24 0.00051 50.1 29.8 323 1043-1409 392-719 (857)
85 KOG1248 Uncharacterized conser 93.2 54 0.0012 46.3 32.6 95 512-614 667-766 (1176)
86 PLN03077 Protein ECB2; Provisi 92.9 59 0.0013 46.1 38.0 318 1043-1408 291-616 (857)
87 PF13432 TPR_16: Tetratricopep 92.9 0.23 4.9E-06 46.1 5.9 60 1120-1179 3-62 (65)
88 PRK10370 formate-dependent nit 92.8 2.6 5.7E-05 48.7 15.7 101 1347-1485 71-176 (198)
89 PLN03081 pentatricopeptide (PP 92.7 56 0.0012 45.2 36.6 321 1044-1409 127-454 (697)
90 PF12569 NARP1: NMDA receptor- 92.6 22 0.00047 47.2 25.5 74 1087-1160 5-84 (517)
91 KOG0212 Uncharacterized conser 92.6 44 0.00095 43.7 29.9 363 197-627 7-377 (675)
92 PLN03088 SGT1, suppressor of 92.5 1.3 2.8E-05 56.0 13.8 112 1351-1500 4-117 (356)
93 PRK15359 type III secretion sy 92.1 2.6 5.6E-05 46.1 13.9 102 1381-1542 24-125 (144)
94 PF13429 TPR_15: Tetratricopep 91.8 0.42 9.1E-06 57.9 8.1 165 1051-1235 88-260 (280)
95 PRK15359 type III secretion sy 91.8 3.1 6.7E-05 45.5 14.0 107 1352-1496 27-135 (144)
96 PRK11189 lipoprotein NlpI; Pro 91.7 9.4 0.0002 47.0 19.6 35 1348-1382 235-269 (296)
97 COG3071 HemY Uncharacterized e 91.3 14 0.0003 46.3 19.9 97 1309-1408 289-388 (400)
98 PF13414 TPR_11: TPR repeat; P 91.0 0.39 8.4E-06 45.0 5.2 54 1120-1173 9-63 (69)
99 PRK15179 Vi polysaccharide bio 90.8 4.7 0.0001 55.1 17.1 112 1349-1498 86-199 (694)
100 PF09295 ChAPs: ChAPs (Chs5p-A 90.5 2.6 5.6E-05 53.8 13.3 114 1345-1500 168-281 (395)
101 TIGR02795 tol_pal_ybgF tol-pal 90.2 3.5 7.6E-05 42.2 12.0 103 1350-1487 3-110 (119)
102 PF12348 CLASP_N: CLASP N term 90.1 9 0.00019 45.0 16.8 177 511-739 19-204 (228)
103 PRK09687 putative lyase; Provi 89.9 3.4 7.3E-05 50.5 13.3 58 6-70 25-82 (280)
104 PRK15179 Vi polysaccharide bio 89.9 4.3 9.4E-05 55.5 15.6 97 1045-1181 91-187 (694)
105 PRK09782 bacteriophage N4 rece 89.9 9.4 0.0002 54.4 19.3 150 1045-1209 514-669 (987)
106 PRK12370 invasion protein regu 89.4 15 0.00032 49.4 19.9 142 1054-1208 318-466 (553)
107 KOG4162 Predicted calmodulin-b 89.3 1E+02 0.0022 42.0 36.8 135 1349-1541 650-786 (799)
108 KOG1126 DNA-binding cell divis 89.2 61 0.0013 43.2 23.9 68 1126-1199 331-403 (638)
109 KOG0495 HAT repeat protein [RN 88.3 1.1E+02 0.0023 41.0 26.4 84 1124-1208 526-609 (913)
110 KOG1155 Anaphase-promoting com 88.2 91 0.002 40.2 26.0 123 1388-1554 337-476 (559)
111 PF12688 TPR_5: Tetratrico pep 88.0 3 6.5E-05 44.4 9.6 85 1120-1204 7-96 (120)
112 PRK12370 invasion protein regu 88.0 11 0.00024 50.6 17.4 86 1122-1208 346-431 (553)
113 cd00189 TPR Tetratricopeptide 87.4 6.6 0.00014 36.7 11.1 59 1351-1409 2-62 (100)
114 PF12895 Apc3: Anaphase-promot 87.2 1.4 2.9E-05 43.4 6.2 79 1127-1207 2-82 (84)
115 KOG0553 TPR repeat-containing 87.1 4.3 9.3E-05 49.1 11.1 99 1357-1493 89-189 (304)
116 PF13414 TPR_11: TPR repeat; P 86.8 2 4.4E-05 40.1 6.9 62 1348-1409 2-66 (69)
117 TIGR02552 LcrH_SycD type III s 86.6 2.7 5.8E-05 44.7 8.6 86 1121-1207 24-109 (135)
118 PF13371 TPR_9: Tetratricopept 86.6 1.3 2.8E-05 41.9 5.5 57 1123-1179 4-60 (73)
119 PLN03088 SGT1, suppressor of 86.1 4.3 9.4E-05 51.3 11.4 90 1118-1208 6-95 (356)
120 COG2956 Predicted N-acetylgluc 85.6 47 0.001 40.9 18.5 154 1045-1210 112-276 (389)
121 cd05804 StaR_like StaR_like; a 85.5 1.1E+02 0.0023 38.2 27.2 298 1090-1409 10-335 (355)
122 KOG1125 TPR repeat-containing 85.5 4.4 9.6E-05 52.5 10.7 116 1379-1554 428-555 (579)
123 KOG0915 Uncharacterized conser 85.4 2.2E+02 0.0048 41.8 35.2 181 363-550 993-1182(1702)
124 PF13646 HEAT_2: HEAT repeats; 85.0 4.9 0.00011 39.4 8.9 86 151-266 3-88 (88)
125 TIGR02795 tol_pal_ybgF tol-pal 84.8 4.3 9.3E-05 41.6 8.9 89 1120-1208 8-101 (119)
126 PRK11189 lipoprotein NlpI; Pro 84.4 24 0.00052 43.4 16.5 103 1347-1487 62-166 (296)
127 PF10508 Proteasom_PSMB: Prote 84.3 1.6E+02 0.0035 39.3 32.1 266 245-569 43-321 (503)
128 PF13432 TPR_16: Tetratricopep 83.9 4.5 9.7E-05 37.5 7.6 64 1385-1486 1-64 (65)
129 cd00189 TPR Tetratricopeptide 83.9 5.2 0.00011 37.5 8.4 85 1121-1206 7-91 (100)
130 TIGR03302 OM_YfiO outer membra 83.6 27 0.00059 40.9 16.0 85 1381-1500 33-120 (235)
131 TIGR03302 OM_YfiO outer membra 82.7 52 0.0011 38.5 17.9 173 1346-1559 30-218 (235)
132 KOG1824 TATA-binding protein-i 81.8 2.4E+02 0.0052 39.5 37.4 165 513-689 871-1041(1233)
133 COG5181 HSH155 U2 snRNP splice 81.7 1.7E+02 0.0036 38.9 21.8 78 139-218 308-386 (975)
134 TIGR02552 LcrH_SycD type III s 81.0 20 0.00044 37.9 12.4 100 1350-1487 18-119 (135)
135 PF13428 TPR_14: Tetratricopep 80.7 4.2 9.1E-05 35.0 5.7 42 1452-1495 2-43 (44)
136 PF09976 TPR_21: Tetratricopep 80.6 16 0.00034 39.9 11.5 93 1349-1480 48-145 (145)
137 PRK13800 putative oxidoreducta 80.1 16 0.00034 52.0 14.3 212 6-308 623-834 (897)
138 KOG1156 N-terminal acetyltrans 79.8 2.3E+02 0.0051 38.1 29.2 61 1348-1408 404-466 (700)
139 KOG0553 TPR repeat-containing 79.3 4.9 0.00011 48.6 7.4 75 1116-1190 83-157 (304)
140 PRK13800 putative oxidoreducta 79.1 16 0.00035 51.9 13.9 210 5-308 653-865 (897)
141 PF05843 Suf: Suppressor of fo 78.2 14 0.00031 45.0 11.4 108 1351-1496 3-116 (280)
142 KOG1241 Karyopherin (importin) 77.9 2.8E+02 0.0061 38.0 38.2 143 538-685 447-607 (859)
143 KOG1240 Protein kinase contain 77.7 12 0.00025 52.3 10.9 241 13-312 471-727 (1431)
144 PRK09687 putative lyase; Provi 77.1 71 0.0015 39.2 16.8 169 148-375 91-259 (280)
145 smart00145 PI3Ka Phosphoinosit 76.8 14 0.00031 42.3 10.0 125 1527-1658 44-171 (184)
146 PRK15363 pathogenicity island 76.4 23 0.0005 39.5 11.0 84 1046-1169 41-124 (157)
147 KOG0624 dsRNA-activated protei 76.1 2.1E+02 0.0046 35.6 22.5 241 1121-1410 113-370 (504)
148 KOG2002 TPR-containing nuclear 74.9 3.4E+02 0.0074 38.2 22.9 225 1130-1412 146-373 (1018)
149 KOG3060 Uncharacterized conser 74.3 62 0.0013 38.8 14.1 51 1121-1171 93-143 (289)
150 PF13575 DUF4135: Domain of un 74.0 26 0.00056 44.7 12.5 110 1775-1960 69-178 (370)
151 PRK10370 formate-dependent nit 74.0 48 0.001 38.4 13.6 52 1128-1179 53-104 (198)
152 KOG1125 TPR repeat-containing 73.7 72 0.0016 42.0 15.8 179 1328-1544 302-499 (579)
153 KOG0616 cAMP-dependent protein 73.6 5.5 0.00012 48.1 5.7 48 1902-1958 140-192 (355)
154 KOG1242 Protein containing ada 73.5 3.3E+02 0.0071 36.6 24.7 345 158-546 106-463 (569)
155 PRK02603 photosystem I assembl 73.5 48 0.001 37.2 13.2 117 1383-1542 37-153 (172)
156 PF12348 CLASP_N: CLASP N term 73.2 79 0.0017 37.1 15.5 145 150-312 56-208 (228)
157 CHL00033 ycf3 photosystem I as 73.1 45 0.00097 37.2 12.8 64 1346-1409 32-100 (168)
158 PF07719 TPR_2: Tetratricopept 73.1 4.6 9.9E-05 32.1 3.6 28 1120-1147 7-34 (34)
159 TIGR02906 spore_CotS spore coa 72.9 35 0.00075 41.9 13.0 29 1927-1957 186-214 (313)
160 KOG1129 TPR repeat-containing 72.9 89 0.0019 38.5 15.2 117 1045-1174 228-350 (478)
161 PRK10803 tol-pal system protei 72.8 41 0.0009 40.8 13.1 104 1349-1487 142-251 (263)
162 PF13428 TPR_14: Tetratricopep 72.8 4.2 9.2E-05 35.0 3.5 31 1121-1151 8-38 (44)
163 PF00515 TPR_1: Tetratricopept 72.4 4.4 9.6E-05 32.5 3.3 28 1120-1147 7-34 (34)
164 KOG0166 Karyopherin (importin) 72.2 3.3E+02 0.0072 36.1 25.4 391 223-686 72-488 (514)
165 PF04733 Coatomer_E: Coatomer 72.1 23 0.00049 43.7 10.9 148 1045-1210 107-263 (290)
166 PTZ00429 beta-adaptin; Provisi 72.1 4.2E+02 0.0091 37.2 41.5 137 157-305 95-243 (746)
167 PF12895 Apc3: Anaphase-promot 71.9 8.4 0.00018 37.8 5.9 46 1124-1170 35-80 (84)
168 PF05918 API5: Apoptosis inhib 71.9 1.1E+02 0.0024 40.9 17.3 253 139-414 47-316 (556)
169 PF12717 Cnd1: non-SMC mitotic 71.4 62 0.0013 36.8 13.5 111 163-293 3-113 (178)
170 COG4783 Putative Zn-dependent 70.4 44 0.00096 43.1 12.8 127 1351-1501 342-470 (484)
171 PF12460 MMS19_C: RNAPII trans 70.3 3.3E+02 0.0072 35.3 21.9 118 165-293 164-283 (415)
172 PRK14574 hmsH outer membrane p 68.9 5.1E+02 0.011 36.9 31.9 114 1047-1172 109-227 (822)
173 PF12717 Cnd1: non-SMC mitotic 68.4 69 0.0015 36.4 13.1 84 254-351 1-84 (178)
174 cd00870 PI3Ka_III Phosphoinosi 67.7 15 0.00033 41.4 7.4 109 1527-1639 46-163 (166)
175 PF13371 TPR_9: Tetratricopept 66.3 17 0.00038 34.2 6.6 55 1356-1410 2-58 (73)
176 KOG1156 N-terminal acetyltrans 66.1 4.7E+02 0.01 35.4 31.1 140 1047-1201 14-161 (700)
177 KOG0168 Putative ubiquitin fus 65.7 98 0.0021 42.4 14.8 152 255-417 269-438 (1051)
178 PF12755 Vac14_Fab1_bd: Vacuol 65.3 17 0.00036 37.4 6.5 92 516-615 3-96 (97)
179 PF12530 DUF3730: Protein of u 65.1 1.7E+02 0.0037 34.9 16.0 169 155-355 8-185 (234)
180 cd05804 StaR_like StaR_like; a 65.1 1.3E+02 0.0027 37.6 15.8 152 1045-1209 48-212 (355)
181 PF13646 HEAT_2: HEAT repeats; 64.7 37 0.00081 33.1 8.8 79 196-303 6-85 (88)
182 PF04826 Arm_2: Armadillo-like 63.8 61 0.0013 39.2 11.9 178 240-431 12-202 (254)
183 PF14559 TPR_19: Tetratricopep 63.5 9.8 0.00021 35.3 4.2 51 1359-1409 1-53 (68)
184 PF05804 KAP: Kinesin-associat 62.7 5.9E+02 0.013 35.5 34.9 127 282-419 291-426 (708)
185 PF00613 PI3Ka: Phosphoinositi 62.2 39 0.00085 38.8 9.5 128 1527-1661 45-175 (184)
186 KOG0624 dsRNA-activated protei 61.4 4.2E+02 0.009 33.3 20.3 68 1345-1412 219-300 (504)
187 cd00020 ARM Armadillo/beta-cat 60.8 33 0.00072 35.0 8.1 101 198-309 15-119 (120)
188 cd00872 PI3Ka_I Phosphoinositi 60.5 42 0.00091 38.1 9.2 124 1527-1657 39-165 (171)
189 smart00299 CLH Clathrin heavy 60.4 1.2E+02 0.0026 32.7 12.5 89 1039-1139 6-94 (140)
190 PF08767 CRM1_C: CRM1 C termin 60.3 4.3E+02 0.0094 33.1 19.3 223 536-799 67-296 (319)
191 PF08569 Mo25: Mo25-like; Int 59.5 1.7E+02 0.0036 37.0 15.0 143 512-687 89-241 (335)
192 KOG0495 HAT repeat protein [RN 58.9 6.2E+02 0.013 34.4 37.6 242 1349-1651 550-806 (913)
193 PF10363 DUF2435: Protein of u 58.7 17 0.00036 37.0 5.1 76 655-747 3-78 (92)
194 KOG0548 Molecular co-chaperone 58.6 1.1E+02 0.0024 40.0 13.3 142 1048-1204 306-447 (539)
195 PRK02603 photosystem I assembl 58.5 1E+02 0.0023 34.5 12.1 64 1346-1409 32-100 (172)
196 PF13176 TPR_7: Tetratricopept 58.0 11 0.00023 31.2 3.0 22 1121-1142 6-27 (36)
197 KOG0608 Warts/lats-like serine 57.8 11 0.00024 49.3 4.4 37 1919-1958 739-777 (1034)
198 PF09295 ChAPs: ChAPs (Chs5p-A 57.8 1.2E+02 0.0025 39.2 13.5 108 1052-1174 181-294 (395)
199 PF14938 SNAP: Soluble NSF att 57.6 1.8E+02 0.004 35.5 14.9 150 1087-1249 95-258 (282)
200 PF13174 TPR_6: Tetratricopept 57.4 11 0.00024 29.6 3.0 28 1120-1147 6-33 (33)
201 KOG2259 Uncharacterized conser 57.4 1.1E+02 0.0023 41.0 12.9 125 161-312 386-513 (823)
202 PF13513 HEAT_EZ: HEAT-like re 56.4 23 0.00051 31.8 5.2 53 163-216 2-54 (55)
203 PF10274 ParcG: Parkin co-regu 56.3 13 0.00029 42.3 4.4 70 515-585 54-126 (183)
204 CHL00033 ycf3 photosystem I as 56.3 2.1E+02 0.0045 31.9 14.0 115 1385-1542 39-153 (168)
205 KOG1173 Anaphase-promoting com 56.0 6.4E+02 0.014 33.7 22.9 245 1121-1409 251-517 (611)
206 PF11698 V-ATPase_H_C: V-ATPas 55.6 36 0.00079 36.3 7.1 75 142-218 39-114 (119)
207 PF14938 SNAP: Soluble NSF att 55.5 3E+02 0.0066 33.6 16.3 108 1348-1487 34-149 (282)
208 PF13424 TPR_12: Tetratricopep 55.3 41 0.00089 32.2 7.1 69 1384-1483 8-76 (78)
209 PF04781 DUF627: Protein of un 55.2 47 0.001 35.0 7.7 85 1386-1496 1-87 (111)
210 PLN03098 LPA1 LOW PSII ACCUMUL 54.9 29 0.00062 44.8 7.4 53 1122-1174 83-138 (453)
211 KOG0211 Protein phosphatase 2A 53.5 2.1E+02 0.0046 39.9 15.5 252 10-308 361-623 (759)
212 KOG0550 Molecular chaperone (D 52.9 55 0.0012 41.5 9.0 119 1123-1249 258-380 (486)
213 TIGR02172 Fb_sc_TIGR02172 Fibr 51.8 37 0.0008 40.2 7.3 26 1930-1957 155-180 (226)
214 PF12755 Vac14_Fab1_bd: Vacuol 51.8 61 0.0013 33.3 7.9 82 262-351 7-89 (97)
215 KOG1941 Acetylcholine receptor 51.7 56 0.0012 40.6 8.7 92 1045-1142 127-234 (518)
216 PF03378 CAS_CSE1: CAS/CSE pro 51.5 3E+02 0.0065 36.1 15.9 212 486-718 18-253 (435)
217 KOG0168 Putative ubiquitin fus 51.0 2.1E+02 0.0045 39.6 14.1 153 512-677 181-357 (1051)
218 PF03704 BTAD: Bacterial trans 51.0 37 0.0008 36.8 6.7 52 1122-1173 70-121 (146)
219 KOG1174 Anaphase-promoting com 51.0 1.3E+02 0.0028 38.3 11.6 96 1045-1180 305-400 (564)
220 KOG0545 Aryl-hydrocarbon recep 50.8 61 0.0013 38.5 8.4 81 1098-1184 168-266 (329)
221 PF08569 Mo25: Mo25-like; Int 50.8 1.7E+02 0.0037 36.9 13.1 94 472-568 182-284 (335)
222 PRK10153 DNA-binding transcrip 50.2 1.5E+02 0.0033 39.7 13.3 70 1380-1488 419-488 (517)
223 KOG2002 TPR-containing nuclear 50.1 9.8E+02 0.021 34.1 34.7 123 1050-1184 246-378 (1018)
224 PF02985 HEAT: HEAT repeat; I 49.8 25 0.00054 28.1 3.8 26 194-219 4-29 (31)
225 PF12719 Cnd3: Nuclear condens 49.1 2.5E+02 0.0053 34.8 14.2 141 198-379 35-189 (298)
226 PF12074 DUF3554: Domain of un 48.2 1.1E+02 0.0023 38.6 11.1 68 151-218 164-234 (339)
227 cd00864 PI3Ka Phosphoinositide 48.0 57 0.0012 36.4 7.6 105 1527-1639 39-149 (152)
228 KOG1915 Cell cycle control pro 47.8 3.9E+02 0.0085 34.8 15.1 152 1349-1559 207-373 (677)
229 PF13431 TPR_17: Tetratricopep 47.7 17 0.00036 29.8 2.5 32 1136-1167 1-32 (34)
230 COG3063 PilF Tfp pilus assembl 47.7 2E+02 0.0044 34.2 12.0 111 1348-1494 68-180 (250)
231 KOG4234 TPR repeat-containing 47.2 1.2E+02 0.0025 35.3 9.6 80 1388-1500 102-181 (271)
232 PF13181 TPR_8: Tetratricopept 46.7 21 0.00045 28.5 2.9 27 1120-1146 7-33 (34)
233 COG0661 AarF Predicted unusual 46.5 13 0.00028 49.2 2.7 25 1932-1957 288-312 (517)
234 KOG1058 Vesicle coat complex C 46.4 1.5E+02 0.0033 40.3 11.8 139 165-340 223-362 (948)
235 KOG1243 Protein kinase [Genera 46.2 1.5E+02 0.0033 40.2 11.9 200 486-746 243-443 (690)
236 cd05145 RIO1_like RIO kinase f 46.1 14 0.00029 42.3 2.5 25 1932-1958 141-165 (190)
237 COG5010 TadD Flp pilus assembl 45.7 2.2E+02 0.0047 34.4 12.1 150 1348-1558 66-219 (257)
238 KOG1128 Uncharacterized conser 45.5 1.5E+02 0.0031 40.4 11.6 142 1043-1207 401-543 (777)
239 PF06552 TOM20_plant: Plant sp 45.2 92 0.002 35.7 8.6 63 1469-1542 51-113 (186)
240 TIGR03843 conserved hypothetic 45.0 19 0.00041 42.6 3.4 46 1919-1965 134-179 (253)
241 KOG2003 TPR repeat-containing 44.9 3.4E+02 0.0074 34.8 13.8 95 1086-1180 592-692 (840)
242 cd03567 VHS_GGA VHS domain fam 44.9 2.5E+02 0.0055 30.9 11.8 64 632-697 17-80 (139)
243 cd05147 RIO1_euk RIO kinase fa 44.8 13 0.00028 42.7 2.0 24 1933-1958 142-165 (190)
244 KOG2047 mRNA splicing factor [ 44.6 9.9E+02 0.022 32.6 41.2 97 1310-1408 348-452 (835)
245 PF13431 TPR_17: Tetratricopep 44.3 23 0.0005 29.0 2.9 24 1476-1499 2-25 (34)
246 PF13513 HEAT_EZ: HEAT-like re 43.2 41 0.00088 30.2 4.6 54 670-739 2-55 (55)
247 KOG0548 Molecular co-chaperone 42.6 58 0.0013 42.5 7.3 85 1118-1203 6-90 (539)
248 PF04733 Coatomer_E: Coatomer 42.2 42 0.0009 41.4 6.0 61 1119-1179 206-267 (290)
249 cd05153 HomoserineK_II Homoser 42.0 2.8E+02 0.006 33.8 13.2 29 1928-1957 175-203 (296)
250 KOG1240 Protein kinase contain 41.6 2.2E+02 0.0047 40.9 12.6 160 148-312 463-648 (1431)
251 PRK10866 outer membrane biogen 40.8 2.8E+02 0.0061 33.3 12.6 63 1349-1411 32-99 (243)
252 PRK10803 tol-pal system protei 40.7 1.4E+02 0.0031 36.3 10.1 83 1381-1498 142-228 (263)
253 cd00869 PI3Ka_II Phosphoinosit 40.6 1.4E+02 0.003 34.0 9.2 111 1527-1642 39-152 (169)
254 smart00288 VHS Domain present 40.2 2.9E+02 0.0064 30.0 11.4 48 650-697 32-79 (133)
255 COG5240 SEC21 Vesicle coat com 40.0 1.1E+03 0.023 31.7 33.2 94 492-619 406-502 (898)
256 PF13424 TPR_12: Tetratricopep 39.8 99 0.0021 29.5 7.0 63 1347-1409 3-74 (78)
257 KOG1173 Anaphase-promoting com 39.1 6E+02 0.013 34.0 15.3 71 1335-1409 332-408 (611)
258 cd05151 ChoK Choline Kinase (C 39.1 23 0.0005 39.0 2.9 30 1927-1958 106-135 (170)
259 PF08167 RIX1: rRNA processing 38.7 2.5E+02 0.0054 31.7 11.0 89 496-592 69-164 (165)
260 cd03568 VHS_STAM VHS domain fa 38.6 3E+02 0.0065 30.5 11.3 64 632-697 16-79 (144)
261 KOG2076 RNA polymerase III tra 38.1 1.4E+03 0.03 32.4 26.5 84 1380-1500 413-496 (895)
262 KOG0547 Translocase of outer m 38.0 1.9E+02 0.0041 37.7 10.5 122 1344-1496 423-546 (606)
263 KOG0946 ER-Golgi vesicle-tethe 38.0 1.3E+03 0.029 32.2 36.5 283 233-566 75-398 (970)
264 cd00871 PI4Ka Phosphoinositide 37.9 54 0.0012 37.4 5.4 62 1579-1643 87-151 (175)
265 PF07719 TPR_2: Tetratricopept 37.7 73 0.0016 25.1 4.8 33 1451-1485 1-33 (34)
266 PRK04750 ubiB putative ubiquin 37.4 19 0.00041 48.0 2.1 26 1931-1957 282-311 (537)
267 COG3063 PilF Tfp pilus assembl 37.0 3.5E+02 0.0077 32.3 11.8 44 1123-1168 78-123 (250)
268 smart00028 TPR Tetratricopepti 36.8 46 0.001 24.3 3.5 27 1120-1146 7-33 (34)
269 KOG3616 Selective LIM binding 36.8 1.3E+03 0.028 31.7 23.1 91 1034-1139 726-816 (1636)
270 PRK14879 serine/threonine prot 36.4 77 0.0017 36.3 6.8 24 1932-1957 118-141 (211)
271 KOG1126 DNA-binding cell divis 36.3 3.4E+02 0.0073 36.7 12.8 132 1350-1541 490-623 (638)
272 PF13525 YfiO: Outer membrane 36.2 5.5E+02 0.012 29.7 13.7 86 1380-1500 4-92 (203)
273 PF00515 TPR_1: Tetratricopept 35.8 82 0.0018 25.1 4.8 33 1451-1485 1-33 (34)
274 PF00790 VHS: VHS domain; Int 35.6 3.1E+02 0.0067 30.0 10.8 48 650-697 37-84 (140)
275 PF10602 RPN7: 26S proteasome 35.4 1.1E+02 0.0024 34.9 7.6 52 1121-1172 43-97 (177)
276 TIGR01982 UbiB 2-polyprenylphe 35.4 49 0.0011 43.2 5.4 25 1932-1957 280-304 (437)
277 PRK15363 pathogenicity island 35.2 2.5E+02 0.0054 31.6 9.9 79 1124-1204 45-124 (157)
278 PRK10359 lipopolysaccharide co 35.0 24 0.00053 42.0 2.3 24 1932-1957 158-181 (232)
279 COG4235 Cytochrome c biogenesi 34.8 3.2E+02 0.0069 33.7 11.5 63 1347-1409 154-221 (287)
280 PF08167 RIX1: rRNA processing 34.4 2.3E+02 0.005 31.9 9.9 121 144-271 22-144 (165)
281 cd03561 VHS VHS domain family; 34.3 3.9E+02 0.0084 29.0 11.2 63 632-696 16-78 (133)
282 COG3118 Thioredoxin domain-con 34.1 3.3E+02 0.0072 33.7 11.4 51 1122-1172 142-192 (304)
283 PF04118 Dopey_N: Dopey, N-ter 33.1 4.1E+02 0.0089 33.2 12.4 168 513-687 22-204 (307)
284 TIGR03724 arch_bud32 Kae1-asso 33.1 32 0.00068 39.2 2.8 24 1932-1957 113-136 (199)
285 PRK14720 transcript cleavage f 33.0 1.2E+03 0.027 33.4 18.1 133 1347-1500 29-163 (906)
286 PF09976 TPR_21: Tetratricopep 32.9 6.6E+02 0.014 27.2 13.8 77 1124-1202 58-137 (145)
287 KOG2053 Mitochondrial inherita 32.8 3.1E+02 0.0067 38.3 11.8 101 1052-1165 21-127 (932)
288 cd00020 ARM Armadillo/beta-cat 32.8 1.8E+02 0.0039 29.5 8.2 107 152-268 12-118 (120)
289 KOG1155 Anaphase-promoting com 32.6 5.5E+02 0.012 33.6 13.2 91 1086-1176 432-535 (559)
290 KOG2160 Armadillo/beta-catenin 32.1 4.9E+02 0.011 32.9 12.7 160 166-342 101-264 (342)
291 KOG1020 Sister chromatid cohes 31.9 2.1E+03 0.045 32.7 24.9 103 142-247 807-921 (1692)
292 KOG4199 Uncharacterized conser 31.3 9.8E+02 0.021 30.2 14.5 223 41-268 12-269 (461)
293 KOG0212 Uncharacterized conser 31.2 1.5E+03 0.032 30.6 24.9 169 487-691 201-372 (675)
294 cd03569 VHS_Hrs_Vps27p VHS dom 31.0 4.8E+02 0.01 28.8 11.3 63 632-696 20-82 (142)
295 PRK10866 outer membrane biogen 30.6 97 0.0021 37.2 6.4 61 1121-1181 39-102 (243)
296 KOG1258 mRNA processing protei 30.5 1.5E+03 0.033 30.6 26.8 297 1088-1410 60-395 (577)
297 PHA02768 hypothetical protein; 30.3 20 0.00043 33.0 0.4 16 106-121 3-18 (55)
298 KOG2032 Uncharacterized conser 29.8 8.7E+02 0.019 32.1 14.4 174 513-694 272-479 (533)
299 cd05144 RIO2_C RIO kinase fami 29.8 43 0.00094 38.3 3.2 30 1931-1961 147-176 (198)
300 PF14853 Fis1_TPR_C: Fis1 C-te 29.8 63 0.0014 29.6 3.5 30 1121-1150 8-37 (53)
301 KOG0603 Ribosomal protein S6 k 29.1 33 0.00071 45.6 2.2 46 1930-1980 436-481 (612)
302 COG1729 Uncharacterized protei 29.0 3.9E+02 0.0084 32.6 10.9 102 1352-1488 144-250 (262)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 28.5 6.5E+02 0.014 26.3 11.5 74 622-697 6-79 (115)
304 KOG1248 Uncharacterized conser 28.4 2.1E+03 0.046 31.7 30.6 97 520-622 806-906 (1176)
305 PF09324 DUF1981: Domain of un 28.3 1.2E+02 0.0027 30.4 5.7 54 508-561 27-82 (86)
306 cd05119 RIO RIO kinase family, 28.2 40 0.00086 37.9 2.5 26 1932-1959 138-163 (187)
307 PF02985 HEAT: HEAT repeat; I 28.1 91 0.002 24.9 3.8 28 657-684 2-29 (31)
308 KOG0543 FKBP-type peptidyl-pro 28.0 2E+02 0.0043 36.8 8.5 104 1052-1160 227-337 (397)
309 KOG1991 Nuclear transport rece 27.8 9.9E+02 0.021 34.1 15.3 80 509-593 513-599 (1010)
310 PF05918 API5: Apoptosis inhib 27.3 1.6E+02 0.0034 39.5 7.9 62 514-575 283-349 (556)
311 PF12688 TPR_5: Tetratrico pep 27.2 8E+02 0.017 26.3 13.2 61 1351-1411 3-68 (120)
312 COG2956 Predicted N-acetylgluc 26.9 1.4E+03 0.03 29.0 25.8 278 1264-1632 36-316 (389)
313 cd03572 ENTH_epsin_related ENT 26.6 4.7E+02 0.01 28.3 9.8 77 651-739 34-117 (122)
314 PF09477 Type_III_YscG: Bacter 26.2 2.5E+02 0.0055 29.6 7.4 49 1157-1211 49-97 (116)
315 PLN02789 farnesyltranstransfer 26.1 6.9E+02 0.015 31.4 13.0 47 1131-1177 125-171 (320)
316 PLN03098 LPA1 LOW PSII ACCUMUL 25.9 2E+02 0.0044 37.5 8.2 66 1344-1409 70-140 (453)
317 PF01636 APH: Phosphotransfera 25.9 39 0.00085 38.8 2.0 32 1926-1957 164-195 (239)
318 PF14500 MMS19_N: Dos2-interac 25.7 8.9E+02 0.019 29.5 13.4 131 510-657 10-142 (262)
319 PF11698 V-ATPase_H_C: V-ATPas 25.6 1.2E+02 0.0025 32.6 5.1 28 659-686 90-117 (119)
320 PF13181 TPR_8: Tetratricopept 25.5 1.3E+02 0.0027 23.8 4.3 33 1451-1485 1-33 (34)
321 PLN02789 farnesyltranstransfer 25.4 1.4E+03 0.031 28.6 17.1 139 1346-1542 34-175 (320)
322 PF05843 Suf: Suppressor of fo 25.2 3.9E+02 0.0085 32.7 10.5 104 1349-1487 35-141 (280)
323 KOG2956 CLIP-associating prote 25.1 9.3E+02 0.02 31.7 13.4 52 263-314 306-363 (516)
324 COG4783 Putative Zn-dependent 25.0 8.2E+02 0.018 32.3 13.1 87 1124-1210 350-452 (484)
325 KOG2280 Vacuolar assembly/sort 25.0 2.1E+03 0.044 30.3 23.1 283 1038-1403 505-792 (829)
326 KOG3081 Vesicle coat complex C 24.7 1.5E+02 0.0033 35.9 6.3 63 1117-1179 210-273 (299)
327 KOG4524 Uncharacterized conser 24.7 1.3E+03 0.029 32.8 15.7 70 262-339 569-640 (1014)
328 KOG1127 TPR repeat-containing 24.4 1.3E+03 0.027 33.3 15.2 45 1454-1499 39-83 (1238)
329 KOG0414 Chromosome condensatio 24.3 1.2E+03 0.027 33.9 15.4 43 656-698 360-408 (1251)
330 PF13525 YfiO: Outer membrane 24.2 1.4E+02 0.0031 34.5 6.2 61 1120-1180 11-74 (203)
331 COG2976 Uncharacterized protei 24.0 5.8E+02 0.013 29.9 10.5 93 1353-1484 93-190 (207)
332 KOG2213 Apoptosis inhibitor 5/ 24.0 1.5E+03 0.033 29.1 14.7 68 485-552 211-295 (460)
333 smart00090 RIO RIO-like kinase 23.9 53 0.0011 39.2 2.6 28 1932-1961 172-199 (237)
334 cd04792 LanM-like LanM-like pr 23.9 4.4E+02 0.0095 37.4 12.0 109 1775-1962 112-220 (825)
335 KOG1129 TPR repeat-containing 23.9 7.8E+02 0.017 30.9 11.9 117 1045-1173 261-383 (478)
336 KOG3087 Serine/threonine prote 23.6 5E+02 0.011 30.4 9.8 49 1793-1850 55-105 (229)
337 PF06176 WaaY: Lipopolysacchar 23.5 62 0.0013 38.4 2.9 24 1932-1957 158-181 (229)
338 KOG1566 Conserved protein Mo25 23.3 1.6E+03 0.034 28.3 16.8 97 472-570 184-289 (342)
339 KOG4413 26S proteasome regulat 22.8 5.8E+02 0.012 31.8 10.6 117 140-269 27-156 (524)
340 KOG0567 HEAT repeat-containing 22.8 2.9E+02 0.0062 33.6 8.0 65 654-742 186-250 (289)
341 PRK01723 3-deoxy-D-manno-octul 22.7 61 0.0013 38.7 2.8 25 1932-1957 165-189 (239)
342 KOG0915 Uncharacterized conser 22.5 3E+03 0.064 31.3 29.8 174 523-717 1260-1450(1702)
343 KOG0598 Ribosomal protein S6 k 22.4 44 0.00094 41.8 1.5 35 1923-1958 135-173 (357)
344 KOG2023 Nuclear transport rece 22.3 2.2E+03 0.047 29.7 39.4 371 273-749 385-783 (885)
345 KOG0211 Protein phosphatase 2A 22.1 5.1E+02 0.011 36.3 11.4 176 8-267 522-699 (759)
346 smart00755 Grip golgin-97, Ran 22.0 1.1E+02 0.0025 27.2 3.5 38 143-182 2-39 (46)
347 KOG4642 Chaperone-dependent E3 21.7 3.9E+02 0.0084 32.2 8.7 70 1125-1202 21-90 (284)
348 KOG1020 Sister chromatid cohes 21.7 3E+03 0.066 31.2 35.7 124 172-312 800-923 (1692)
349 smart00638 LPD_N Lipoprotein N 21.6 4.4E+02 0.0096 35.6 10.9 206 3-258 357-566 (574)
350 PF01465 GRIP: GRIP domain; I 21.4 89 0.0019 27.8 2.8 39 143-182 3-41 (46)
351 cd00256 VATPase_H VATPase_H, r 21.2 2E+03 0.042 28.7 24.7 115 146-270 52-173 (429)
352 KOG0414 Chromosome condensatio 21.1 3.4E+02 0.0073 39.1 9.3 120 243-395 925-1045(1251)
353 PF12487 DUF3703: Protein of u 21.0 3.5E+02 0.0076 28.8 7.4 57 1353-1409 13-75 (112)
354 PRK10941 hypothetical protein; 20.8 2E+02 0.0044 35.1 6.7 56 1122-1179 189-246 (269)
355 PRK12274 serine/threonine prot 20.5 74 0.0016 37.6 2.8 25 1933-1958 115-140 (218)
356 PRK04841 transcriptional regul 20.4 2.6E+03 0.056 29.8 28.4 96 1359-1486 663-764 (903)
357 PRK11906 transcriptional regul 20.4 1E+03 0.022 31.4 12.8 105 1347-1489 295-408 (458)
358 KOG0892 Protein kinase ATM/Tel 20.1 6.8 0.00015 58.6 -6.8 196 1762-1989 2174-2380(2806)
No 1
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-251 Score=2455.37 Aligned_cols=1806 Identities=36% Similarity=0.571 Sum_probs=1510.1
Q ss_pred hhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccccccccc
Q 000149 20 VRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILS 99 (2037)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (2037)
++.-|-+|+| ..++-+....||.+|+.+..+....++|-+++.+||+.|+++.. ....+...|+.|... .....
T Consensus 444 ~~~v~~~sl~---~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~v~llC~~~~~--~~~~~~t~~~~~~~~-~~~~~ 517 (2382)
T KOG0890|consen 444 IQEVAEMSLP---SLSQYIRILNMFEKLLLKLSDDLQNIKKDFAQILVFLLCTKQGK--ENYSEKTITKYFLCH-GLQKL 517 (2382)
T ss_pred HHHHHHhccc---hhcccchhccccHHHHHHhcccccccchhhhhheEEEeeccccc--cCchhhhhhhhhhcc-ccccc
Confidence 8888999999 55666667788888999999999999999999999999999754 566788899988872 22222
Q ss_pred ccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccC
Q 000149 100 QTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179 (2037)
Q Consensus 100 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~ 179 (2037)
.. +.|+.|++|++.. +...-.+....+......+..++... +...++..++|++++++..++..+-|.
T Consensus 518 ~~----l~~~~l~~c~~~~----~~~~~~~~~~~~~~i~~~~~~d~~~~----~~~~~n~~~~e~~~~~~~~~r~~ll~t 585 (2382)
T KOG0890|consen 518 FC----LAANSLSKCKKEL----EEAFLSPPSLEMVKIDYEFLLDLFFG----INQHLNTFSKETQVSFVETIRTMLLHT 585 (2382)
T ss_pred cc----cccchhccCcccc----hhhhcCCCcHHHHhhhhhhccchHHh----HHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 22 9999999999432 12222222222333344444554443 677889999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCCh--hH
Q 000149 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDP--LI 257 (2037)
Q Consensus 180 ~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i 257 (2037)
+....+.++.. .+ .+.+ ..|+.+...++..+.+.|.+.-.+...+. ...++.-+.+.....+|- -.
T Consensus 586 t~~~~~~~~~~------~~-~~~~----~~Fle~~~~l~~~~~~~~~~~~~~~~~k~-~~~~~~ll~~~~~~~~d~~~l~ 653 (2382)
T KOG0890|consen 586 TSKIVLFARSS------II-VALD----IGFLEQLNNLVRVEILVCLRSELTVTLKN-LRMYTNLLEISFAALSDDAALF 653 (2382)
T ss_pred Ccceeeeecch------hh-hccc----hHHHHhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHhhcchhHHH
Confidence 97765555444 12 3444 77999999988888888877766544443 566777777766666663 67
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHH-HH
Q 000149 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDY-LS 336 (2037)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~-~~ 336 (2037)
.++.|..+-..+.++.+..|+|..++-+++.|+++.|..++ . .+++..++++..++...+|.- ++
T Consensus 654 i~~~L~~~~s~~~~~~v~~~lf~~~~~~~a~q~~~~~~~~s-~-------------~~~~~~~l~~~~~~~~~i~~~~~~ 719 (2382)
T KOG0890|consen 654 IHHTLHFVLSARISSVVKSELFLSILGLLALQNVKINVNVS-T-------------VGNKAEALGYTSKIYLDIFQRDIL 719 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee-c-------------chhHHHHhhhHHHHHHHHHHhhhh
Confidence 78888888888888999999999999999999999999999 3 344556667776665566665 67
Q ss_pred HhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc
Q 000149 337 VRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ 416 (2037)
Q Consensus 337 ~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~ 416 (2037)
-+..++|..+.+++....+...+.+++.+++++||.++....+ ++..+++............++.+ ++.|+++++++
T Consensus 720 ~~~~~~~n~~~~~~~~~~~~~~~~~~r~~~~~~Lp~~~~~~~~--~a~~~vr~~~~~i~~l~~~~~~n-~~~i~~~~~~t 796 (2382)
T KOG0890|consen 720 NRLFSDPNSASEFAPAYVEHEGRELLRCLLAVVLPDLNFPNQK--IAVAIVRPLLKYISTLSSLLLIN-LTLIYTHLLCT 796 (2382)
T ss_pred hHHHhhhhhhhhhcchhhccchHHHHHHHHHHhcchhhccccH--HHHHHHHHhhhhhhHHHHHHhcC-chhhhchHhhh
Confidence 7788999999999998888889999999999999999999765 45666666666655555555555 99999999999
Q ss_pred ccHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHH
Q 000149 417 ADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHF 496 (2037)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 496 (2037)
+.++...+++.++..+.++++++.+.+..+..+.||+++......-+..+...+-.+.+..-.+..+.++.+.+|+++|+
T Consensus 797 ~~~~~~~sv~~l~~~~~~s~l~~~~~~e~~~~~~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~e~~~~fl~~~l 876 (2382)
T KOG0890|consen 797 EEPNNLESVISLLKLRIGSDLRESLISETFALLVELLRFYNNNFTPEKRKFSSRKCDFIDEDIRTLISSELFQDFLQNHL 876 (2382)
T ss_pred ccchhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhccCcHHHHhhhhhhhhhhhccchhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999777665544432222223333222345566788999999999
Q ss_pred HHHHHHhhhhhcCCCC-hHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCC
Q 000149 497 VGLLNSIDRKMLHAED-LSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVS 573 (2037)
Q Consensus 497 LGil~~~~~~l~~~~~-~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~s-aL~~~~L~~~~l~~W~~fv~~L~~~~ 573 (2037)
||++++|+.++++++. ...|++++.+|+.+|++||+ +|++++|||+.+|++ ++..++++..|++||+.|++.+.+.
T Consensus 877 lgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~- 955 (2382)
T KOG0890|consen 877 LGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDN- 955 (2382)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhh-
Confidence 9999999999988765 45789999999999999995 999999999999999 7999999999999999999999874
Q ss_pred CcchhhHHHH-HHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCC
Q 000149 574 PSSTKHVISQ-VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT 652 (2037)
Q Consensus 574 ~~~l~~ll~~-i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~ 652 (2037)
..+++++. ++++++|+++.. ..+.+..|+++|+.+|++.+...+.++|.+|++|++.+....++.+|+..+
T Consensus 956 --~~~~~~~~~i~~~l~p~l~~~------~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~ 1027 (2382)
T KOG0890|consen 956 --EKSDILDRNIIAALFPLLEHI------ELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLS 1027 (2382)
T ss_pred --hhcchhhhHHHHHHHHHhccc------cHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhcc
Confidence 45566666 899999999621 258899999999999999999999999999999999999999999998766
Q ss_pred ---HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHH
Q 000149 653 ---LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLK 729 (2037)
Q Consensus 653 ---l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~ 729 (2037)
+.++++.|++.+.|||..||++++++|+.++.+++ ++......+.....+.+++|+++||+||.++. .+++
T Consensus 1028 ~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~-e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~-----~~~~ 1101 (2382)
T KOG0890|consen 1028 EDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNR-EKLDVLALKELGPEEDLSQLLTVLLDGCQKKT-----SQLE 1101 (2382)
T ss_pred ccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhh-hHhhhhhhhhcccchhHHHHHHHHHHHHHHHH-----HHHH
Confidence 78999999999999999999999999999999544 45655444333233679999999999999975 4899
Q ss_pred HHHHHhhcccCccCccccccccccc----cc---ccccCh--hhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 730 LVCADCLGALGAVDPAKVKGFSCQR----FK---IECSDD--DLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 730 ~lca~CLG~IGalDp~r~~~~~~~~----~~---~~~~~~--~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
++||+|||+||||||++..++..+. .. .++.+. .| .++....++++|+-..|+..|+++||++||.|+..
T Consensus 1102 ~~~akcLg~lgaidp~~~~~k~q~~i~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~~~ 1180 (2382)
T KOG0890|consen 1102 ELCAKCLGELGAIDPSCHRFKEQETIPSILQVLPIECSDLPIKF-IDFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLVLG 1180 (2382)
T ss_pred HHHHHHHHhhhccCchhhhhhcccccchhhhccccccCchhhhh-HHHHHHHHHHHHhcCcChhhhhHHHHHHHHHHHHh
Confidence 9999999999999999888765432 11 122222 24 57888999999999999999999999999999955
Q ss_pred CCCccccCCcchhhhhhhccccchhhhcccCCCCCcchhhchhhH-HHHHhhchhHHHHhccccccccccCC-CCCCCCC
Q 000149 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGR-KFWDRFSIYVKEIIAPCLTSRFQLPS-GSDSVST 878 (2037)
Q Consensus 801 g~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~W~~~p~~~~~~l~P~LtSrY~~~~-~~~~~~~ 878 (2037)
||+ +.. ...++. ++|++||+++|+++.|+|+|||+.+. .++....
T Consensus 1181 ~~~----n~e-----------------------------~~~~~~~elW~~Fp~~~k~~~~P~L~s~Y~sq~~~p~~~~k 1227 (2382)
T KOG0890|consen 1181 GSS----NIE-----------------------------PLDRGMCELWERFPNEVKEEMEPTLTSRYASQKPEPSVGEK 1227 (2382)
T ss_pred ccc----cCc-----------------------------cCCccHHHHHHHhHHHHHHHHhhcccchhccCCCCCCcccc
Confidence 554 110 001344 89999999999999999999999443 3445789
Q ss_pred CCcccCCCChHHHHHHHHHHHHhhhcCCch-hHHHHhhhhhhccHhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 000149 879 GPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLD 957 (2037)
Q Consensus 879 ~Pi~~~~~sy~~Wl~~w~~~Ll~~~~~~~~-~iF~~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~~~~i~~Ei~~VL~ 957 (2037)
+|||++...|++|+..|+.+|+.++.++.+ +||++|+.++++|..++.|||||++++|++.+++++|+.|.+||++||+
T Consensus 1228 ~Piy~~~lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~ 1307 (2382)
T KOG0890|consen 1228 KPIYKSSLGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLD 1307 (2382)
T ss_pred cccccccccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999887765 7999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccCCCcchhhHHHHHHHHHHhhHHHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhh
Q 000149 958 AAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGL 1037 (2037)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~f 1037 (2037)
++.++.-+ + ... ...++|+|+||+++||+++|.|+++|.........+|-.+.. .+....+..+ +.+..|++|
T Consensus 1308 ~~~~~t~n-s-~~~-~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~-~~~~~~Tt~~---~~~~~v~~f 1380 (2382)
T KOG0890|consen 1308 EAATNTIN-S-RGT-ASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFW-KSIMSWTTTG---EDIEGVQSF 1380 (2382)
T ss_pred cccccccc-c-ccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhh-eeeeccccCC---CchhhhHHH
Confidence 98665221 1 111 222899999999999999999999988765433222222200 0111111111 236789999
Q ss_pred cCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHH-HhccCC
Q 000149 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSLS 1116 (2037)
Q Consensus 1038 L~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~-~r~~~~ 1116 (2037)
|+.||..+||.++++|++|+||+||+|+| +. +++.....+..+..||.+|+.|+||||++|+++ +.+.++
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~-~~--------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s 1451 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESH-RS--------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS 1451 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHh-cc--------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc
Confidence 99999999999999999999999999998 21 122222333456667779999999999999999 567899
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.+||+.||+.|+|.+|++|||+++|.+|++..++.|+++|+.++|++++++++++|+..+.+++.++|+.+++||||++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHH-HHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchh-hHHhhhHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD-SYTRAYPFI 1274 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~-l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~e-Sy~r~y~~l 1274 (2037)
|+||.+++++. +. ...+|... +|+++++..++|.-.+.+.|+.+|..++.++++.+.+ ||.++|+++
T Consensus 1532 ~qwD~~e~~l~--~~---------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1532 SQWDLLESYLS--DR---------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred cchhhhhhhhh--cc---------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 99999999987 33 34678888 9999999999999999999999999999999998887 999999999
Q ss_pred HHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCC---CCCCchhHHH
Q 000149 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA---SGLGAEVGNC 1351 (2037)
Q Consensus 1275 ~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~---~~l~~~~~~~ 1351 (2037)
++||++.|+++++..+...+....+. .--.+|..|++.++++++.+||||++||.+++. .+++.++|+|
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s~--------~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDSA--------NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccc--------ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 99999999999998876543222111 111689999999999999999999999999876 3678999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
|+++|++|||+|++|+|++||++|..+..|++.+|+|||+|++|++++|+.+||+.++.+..+..+ |
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~-------------~ 1739 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT-------------P 1739 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC-------------C
Confidence 999999999999999999999999999999999999999999999999999999999754333221 1
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhc
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~ 1511 (2037)
-++. +....-..-+|+.|++|+|++++++..+++++++|+.|++.+|.||++||++|+|||+++.+.+..+.+
T Consensus 1740 ~~~~------p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E- 1812 (2382)
T KOG0890|consen 1740 YTDT------PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME- 1812 (2382)
T ss_pred cccc------chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc-
Confidence 1111 111112244689999999999999999999999999999999999999999999999999654422111
Q ss_pred ccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHH-HHHHHHHHHHhhcCCC
Q 000149 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKN-VNGKVMSIMRGCLKDL 1590 (2037)
Q Consensus 1512 ~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l 1590 (2037)
..| ....|+. +|.+|++|+.+|++++||+||||+|||||+|......+...++++.. ....|++.+++++..+
T Consensus 1813 -~~g----~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~l 1886 (2382)
T KOG0890|consen 1813 -KSG----RVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHL 1886 (2382)
T ss_pred -ccc----cHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhC
Confidence 111 2334776 89999999999999999999999999999998655444444555433 3567999999999999
Q ss_pred CchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhh
Q 000149 1591 PAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670 (2037)
Q Consensus 1591 P~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~ 1670 (2037)
|+|+|||+++||+|||||||++|+.++++||.+|+.+||||++|++++++||+++.|++||++|+++.+...+. ..+
T Consensus 1887 p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~---~~~ 1963 (2382)
T KOG0890|consen 1887 PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPD---YKK 1963 (2382)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876553 457
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccchhhhhHH-HHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcE
Q 000149 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA-LKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPT 1749 (2037)
Q Consensus 1671 li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~-l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~ 1749 (2037)
++.++..++++|+++|+++++...+..+++.+|+. .....+..+++|+++.+.+++|..+.+......+.||+ +++++
T Consensus 1964 l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~-~~~~~ 2042 (2382)
T KOG0890|consen 1964 LLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQ-SHLPY 2042 (2382)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCC-Ccchh
Confidence 89999999999999999999988888999999983 23344678999999999999999887654334455666 48899
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+|+|+|++|+||||||+++|||||.|+|||||+||||||+|+|||+.+||++|+||.|+|||+|+||||+|+||++
T Consensus 2043 IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLne 2122 (2382)
T KOG0890|consen 2043 ISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNE 2122 (2382)
T ss_pred hhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
+||+||||+|+.|+++|+.++|..+|.+...+ ......+..+ .+...+.+.|++.++++|||||++||.++||+|.+|
T Consensus 2123 eCGiIEWv~nt~slR~IL~klY~~rg~~~~~~-~l~~~~~~~~-~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW 2200 (2382)
T KOG0890|consen 2123 ECGIIEWVPNTASLREILDKLYMTRGKWMIKK-QLRSVHLKKQ-MAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSW 2200 (2382)
T ss_pred ccceEEecCCcchHHHHHHHHHHhccccchhh-HHHHhcCcHh-hcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHH
Confidence 99999999999999999999998888776432 1111111111 122335678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
|.+|++|+||+||||||||||||||||+||||||..||++|||||+|+|+||++|++||.||||||||||| ||+.|.||
T Consensus 2201 ~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG 2280 (2382)
T KOG0890|consen 2201 FASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEG 2280 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
No 2
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-90 Score=921.16 Aligned_cols=1253 Identities=19% Similarity=0.228 Sum_probs=794.9
Q ss_pred HHHHHHHHHHH--hHHHHHhhcccCCCCCCchhh---HHHHHHHHHhcCCCCHHHHHHHHHhhcc----C-CChhHHHHH
Q 000149 606 VVKILEDLVLK--NRAILKQHIHEFPLLPSIAAL---TEVNKAIQEARGPMTLKDQLLAAVDGLN----H-ENLNVRYMV 675 (2037)
Q Consensus 606 ~~~il~~Li~~--n~~~L~~~i~~lp~Lp~ip~L---~~v~~~l~~~r~~~~l~~~l~~~~~rl~----~-en~~Vr~~a 675 (2037)
...+..+...+ ..+.+...+..+-+ |+++.. -++-.+++..|+.+...+.+..|+..-. + ++.-++...
T Consensus 1296 ~l~~~~~~~~d~~kn~~i~~~~~lf~~-~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~~~f~~ 1374 (2806)
T KOG0892|consen 1296 RLAIGKLFATDEEKNETISFRICLFLP-FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSFTDFDK 1374 (2806)
T ss_pred hHHHHHHHhhhhhhcchhhhhhhhccC-chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCcccchHHH
Confidence 34444444444 23333333333322 344443 3445666778888888888877764322 1 122348889
Q ss_pred HHHHHHHHhhcHHHHHHHHhccCC-CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000149 676 VCELSKLLKLKSEDVTALINGEAC-SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2037)
Q Consensus 676 L~eL~~~L~~~~~~l~~~~~~e~~-~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2037)
|-+|.++.....+..++.+..+.. .+.......+-.||.............+++.+++.|+|..|.+|-+.+.......
T Consensus 1375 l~~l~~~c~~~~~~~~~~~~a~~~~~~~~~~~~~~vNLl~~~~~~~~~~~~k~i~e~~~s~~~~~~~v~vs~~~~~~~~~ 1454 (2806)
T KOG0892|consen 1375 LFSLARQCCDFKGFCYDTIKAMEDIQDFGTWKKGYVNLLLNFEYEGDGFLREQIRELRSSMTGKNDWVDVSNKLRERSAR 1454 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHhhhcccchHHhHHhhhhccccCCcchhhhhhHHHHHhcc
Confidence 999999999998888887763322 2223455566666665544333335578999999999999999988887644222
Q ss_pred cccccc-----ChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCCCccccCCcchhhhhhhccccchhhhcc
Q 000149 755 FKIECS-----DDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVAS 829 (2037)
Q Consensus 755 ~~~~~~-----~~~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~g~~~~~~~~~~~~~~~~l~~~~~~~v~~~ 829 (2037)
+.-... ......+++...+..+|+--.=.+.+ +=+.|-+.+..
T Consensus 1455 ~~~~~~lkl~~~~~L~~~~~~~~~~~n~l~~~c~k~~---~~~~~~~~n~~----------------------------- 1502 (2806)
T KOG0892|consen 1455 ISMNNLLKLYFWTVLDAHFRKVLHSLNLLFWKCYKAR---SRELQDLHNKL----------------------------- 1502 (2806)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH---HHHHHHHHHHH-----------------------------
Confidence 111000 00011112222222333222222222 01222222221
Q ss_pred cCCCCCcchhhchhhHHHHHhhchhHHHHh---ccccccccccCCCCCCCCCCCccc---------CC----CChHHHHH
Q 000149 830 GTMGSDNIHEMNMRGRKFWDRFSIYVKEII---APCLTSRFQLPSGSDSVSTGPIYL---------PS----MSFRRWIY 893 (2037)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~W~~~p~~~~~~l---~P~LtSrY~~~~~~~~~~~~Pi~~---------~~----~sy~~Wl~ 893 (2037)
.....+...|...|+.+-.+. .|.-+++-+....+..-...|++. -. .+++.|+.
T Consensus 1503 ---------~s~~t~~~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~ 1573 (2806)
T KOG0892|consen 1503 ---------FSTDTMGWFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIR 1573 (2806)
T ss_pred ---------HhhhhhhhHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhh
Confidence 000245668999999876543 333333222211111011112111 12 45667776
Q ss_pred HHHHH-HHhhhcCCchhHHHHhhhhhhccHhHHHhhhHHHHHHHHhcCCHHH-HHHHHHHHHHHhcccccCCCCCc-ccC
Q 000149 894 YWIRK-LTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEA-RLGIAQEILSVLDAAASDHSGAS-VHG 970 (2037)
Q Consensus 894 ~w~~~-Ll~~~~~~~~~iF~~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~-~~~i~~Ei~~VL~~~~~~~~~~~-~~~ 970 (2037)
.+... ++. .+....+|..-+++.-.+...+.-..|+....++.....|. ++-...+.+.+++-..-..+... ...
T Consensus 1574 ~~~~~~n~~--~~~K~~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~~st~ 1651 (2806)
T KOG0892|consen 1574 MFFEGSNIM--ELTKNLIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHSLSTY 1651 (2806)
T ss_pred hccccchhh--hhhhhhccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchhhccc
Confidence 43321 111 12334567766666777778888888898888887543333 56666667777765432111000 000
Q ss_pred CCcchhhHHHHHHHHHHhhHH--------HHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhhcCCCC
Q 000149 971 ISGQSEVCIQAIFTLLDNLGQ--------WVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIP 1042 (2037)
Q Consensus 971 ~~~~~~~~~q~vF~vlD~l~~--------W~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip 1042 (2037)
........+|.|-..++...+ |+....+.+. ++-++.+. +. |...+.
T Consensus 1652 ~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~------------~sl~~n~~---~~----------~~m~~n 1706 (2806)
T KOG0892|consen 1652 MANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELIL------------SSLLKNSN---SI----------FKMDMN 1706 (2806)
T ss_pred cccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh------------hccccchh---HH----------HHHHHH
Confidence 001111223444444444333 3333332221 11111110 11 111222
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcC------------------CCCCccccCCCCChhhHHHHHHH----HhhCC
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSG------------------SFNPAAEKSGTFEDEDVSFLMEI----YSFLD 1100 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~------------------~~n~~~~~~~~~~~~~~~~L~~I----Ya~Ld 1100 (2037)
...+++++++|+++.-+..|.|........ ...|. ....+.....||++ |..||
T Consensus 1707 i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----~k~~e~~~~~lqDil~~~y~~I~ 1782 (2806)
T KOG0892|consen 1707 ILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----NKRDELDITLLQDILKKAYESIN 1782 (2806)
T ss_pred HHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHhhCC
Confidence 223344444444444443333322111100 00000 01123566778888 99999
Q ss_pred ChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1101 EPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1101 EpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+||+++|+-.-... .. -+++.+|+.++|..|+..|+. ..+.|.+ ..+.|..+.|++.|....+..+.+|+....-.
T Consensus 1783 ~pD~lyG~~~~~~~-~~-~~l~~~~he~~w~~aL~~~d~-~~~~~ss-~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~~~ 1858 (2806)
T KOG0892|consen 1783 CPDALYGIKRPTSL-KN-LILITAEHEKNWPRALSYYDL-ADMYPSS-EDEAGFINSLQNAGFFHILEFYIDGLKSNDKI 1858 (2806)
T ss_pred CcchhcccCCcccc-cc-cccchhhhhhhHHHHHHhhcc-hhhccch-HhHhHHHHHHHHhcchhHHHHHhcChhhhhhh
Confidence 99999999652211 11 456789999999999999984 3355554 45689999999999999999999999877655
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhh
Q 000149 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260 (2037)
Q Consensus 1181 ~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~ 1260 (2037)
+..+.-...+|||||+|+||..-..... .. ......++..++.++.|+++++.+.+..+++.+|+..+..+.
T Consensus 1859 ~~~~~~e~~Ye~awr~g~Wd~~t~~~~~-~~-------~~~~~~y~e~~f~~l~al~ere~e~~yl~le~a~~~~v~~i~ 1930 (2806)
T KOG0892|consen 1859 DEPSNEELVYEAAWRLGKWDILTLSLVD-QN-------KTKGDYYHESLFEALRALHEREIEGSYLHLEDARNKKVLLIN 1930 (2806)
T ss_pred hhhhhhhhhHHHHHhcCCcccCCcchhh-hh-------hhhchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5555555678999999999987554311 00 112356778899999999999999999999999999999999
Q ss_pred hhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcC
Q 000149 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFG 1340 (2037)
Q Consensus 1261 a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~ 1340 (2037)
..+.++..--|+.+.+|+.+++++.+..+... ..+.+....+...|..-++...+.....+.+..-++.++.
T Consensus 1931 ~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~--------~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l~s 2002 (2806)
T KOG0892|consen 1931 PNSEESSLSFYATLYDLQFLVTLEPIRCLQST--------ADKHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVLLS 2002 (2806)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHhhhhh--------hcchhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988775431 1122344567777888877777777666666666666554
Q ss_pred CCCCC--------chhHHHH----HHHHHHHHHcCChHHHHH---HHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHH
Q 000149 1341 ASGLG--------AEVGNCW----LQYAKLCRLAGHYETATR---AILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQ 1405 (2037)
Q Consensus 1341 ~~~l~--------~~~~~~W----L~~AklARKag~~~~A~~---aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2037)
...+. +...+.. +.-.++||.-...+.-.+ ++-.+..+..-...++.|+..|+.+....+-+.|.
T Consensus 2003 ~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~~s~aq~~~k~~~~~~~e~iL~ 2082 (2806)
T KOG0892|consen 2003 LLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCKFSLAQENLKHDIDKLSEAILW 2082 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHH
Confidence 32111 1111111 223334443333332222 22222222222233444555555544433333333
Q ss_pred HHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcc
Q 000149 1406 QNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSR-VRELQP 1484 (2037)
Q Consensus 1406 ~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~-A~~l~~ 1484 (2037)
....++... +. .. .+.+.++. -....-..+...|+|+.++-...+..|++.|.+ +.....
T Consensus 2083 ~~~~kne~~--~~-----~s--~~~~~~~~----------lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ae 2143 (2806)
T KOG0892|consen 2083 QRDEKNEAI--IS-----LS--ESLAKNNS----------LKEFPSDIYAVLGKWLAETKSENSALISEKYLEKAVSLAE 2143 (2806)
T ss_pred HHHhhhhHH--HH-----HH--hhhhhcch----------hhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhh
Confidence 333222111 00 00 01111111 011234467788999999988888888888853 333222
Q ss_pred --ch----------HHHHHHHHhhhHHHHHHHHhh---hhh---------cc-cCCc----------------------c
Q 000149 1485 --MW----------EKGYFYMAKYCDDVLVDARKR---QEE---------NS-EIGP----------------------S 1517 (2037)
Q Consensus 1485 --~w----------eK~~~~la~y~d~l~~~~~~~---~~~---------~~-~~~~----------------------~ 1517 (2037)
+| .++|+++|+|-|..+.+.+.+ .+- +. ..+. +
T Consensus 2144 ~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lD 2223 (2806)
T KOG0892|consen 2144 HYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRKNHHVRVQRQLILD 2223 (2806)
T ss_pred hcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 368999999988887422110 000 00 0000 0
Q ss_pred hhh-------hhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCC
Q 000149 1518 EKR-------WWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDL 1590 (2037)
Q Consensus 1518 ~~~-------~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 1590 (2037)
+.. ...++..|+++|++++..|.+|....+.|++++||+++.. .+++..|.+.+..+
T Consensus 2224 e~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~----------------~evn~~mk~~i~~i 2287 (2806)
T KOG0892|consen 2224 EEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHL----------------KEVNNSLKHEIQTV 2287 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccch----------------HHHHHHHHHHhccC
Confidence 000 1357889999999999999999999999999999998752 45778888999999
Q ss_pred CchhhHhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCc-------------HHHHHHHHHHHH
Q 000149 1591 PAYQWLTVLPQLVSRIC-HQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-------------PSRREAAAEIIQ 1656 (2037)
Q Consensus 1591 P~~~wlt~lPQLiSRI~-h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~-------------~~R~~~a~~Il~ 1656 (2037)
|.|+|++|+.||.|||. ..+.++...+..++.+++.+||+|++|.++++.+... ..|+.+|+.++.
T Consensus 2288 psyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~sl~~~rki~a~l~~~ 2367 (2806)
T KOG0892|consen 2288 PSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGSIDRDRKIAAELDLC 2367 (2806)
T ss_pred CcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccccchhHHHHHHHhhh
Confidence 99999999999999999 5888999999999999999999999999999864322 223333333444
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccc----cchhhhhHHHHhhccCCcccccccccccccCCCCCC
Q 000149 1657 AAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRT----INISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDAN 1732 (2037)
Q Consensus 1657 ~~k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~----~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~ 1732 (2037)
..... ..+.++++..+++.++.+|+.+.. +..+ +.+..++..++....- .+..|+....
T Consensus 2368 ~v~~~------~~~~v~~v~~lc~~yI~lAnl~~~-q~~t~~k~v~~p~~~~~~K~~nl~----------~v~~pT~ev~ 2430 (2806)
T KOG0892|consen 2368 DVNQG------AGNMVRQLECLCEAYISLANLKTS-QNDTTSKLVRLPGYQWFLKQLNLE----------GVPPPTMNVK 2430 (2806)
T ss_pred Hhhcc------chhHHHHHHHHHHHHHHHhcCccc-ccchhhhhhcCccccHHHhhhhcc----------CCCCCCCCcc
Confidence 43322 247899999999999999984322 2222 3334343333322111 1222332222
Q ss_pred CCCCCCCCCccCCCCcEEeeeccceEEecCCCceeEEEEEecCCCeeeEEec-CCCcchhhHHHHHHHHHHHHHHccCCc
Q 000149 1733 LTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK-PKDDLRKDSRMMEFTAMINRLLSKYPE 1811 (2037)
Q Consensus 1733 ~~~~~~~~pfp~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK-~~dDlRqD~r~~Ql~~liN~ll~k~~e 1811 (2037)
+...+. ..+.|+|.+|.++|.+.++.+-||.|++.||||++|..||| ++||||||+.|.|+|+++|.+|.++++
T Consensus 2431 v~~s~~-----~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~e 2505 (2806)
T KOG0892|consen 2431 VNDSGD-----YGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRE 2505 (2806)
T ss_pred ccCCcc-----cCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHH
Confidence 222222 36889999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred ccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccc----cCchHHHHHHHHHhcCCChhH--HHHH
Q 000149 1812 SRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQ----KTNPQIKRIYDQFQGKIPEDE--MLKT 1885 (2037)
Q Consensus 1812 trrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~ 1885 (2037)
+++|+|.||||+||||++..|++|||.|++|+++++... ..|.+.+. ......++.+...+.+. .++ ....
T Consensus 2506 t~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~--~~gah~ry~p~d~s~~~crk~m~~~q~k~-~E~r~k~y~ 2582 (2806)
T KOG0892|consen 2506 TRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVE--SGGAHKRYRPNDWSLSKCRKLMSEVQKKS-LETRLKAYD 2582 (2806)
T ss_pred HHhcccceeEEeeeecCcccceeecccCCeehhhhhccc--CCccccccCCCCCChHHHHHHHHHHhccc-HHHHHHHHH
Confidence 999999999999999999999999999999999998731 12332221 23445666665544332 222 3446
Q ss_pred hhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC
Q 000149 1886 KILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE 1965 (2037)
Q Consensus 1886 ~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~ 1965 (2037)
+||..|.||||.||++.||||..||++|.+||||.|+.|||||||||||||..|||||..||++||||||..|++|+.++
T Consensus 2583 ~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilp 2662 (2806)
T KOG0892|consen 2583 KVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILP 2662 (2806)
T ss_pred HHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccChhHHh-hcccchhhHHHHHhhH----HHhhh---hhhHhhcccCCC
Q 000149 1966 KPELVPFRLTQVRKS-YGLCAMHFIVILSPLF----FPLKK---ILIYVCLVPQPS 2013 (2037)
Q Consensus 1966 ~pE~VPFRLT~nmvd-~G~~g~e~~~~~~~~f----~~~~k---~~~~~~~l~~~~ 2013 (2037)
+||.|||||||++|| ||++|+|| +|+-+. .-+|+ .+.+++|+---|
T Consensus 2663 tPE~VPFRLTRDiVdgmGItGveG--vFrRccE~t~~vlR~~~~~lltileVl~yD 2716 (2806)
T KOG0892|consen 2663 TPETVPFRLTRDIVDGMGITGVEG--VFRRCCEFTLEVLRREKESLLTILEVLLYD 2716 (2806)
T ss_pred CCCcccceeehhhccccCccCchH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999 99999999 666444 44555 666677774444
No 3
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.1e-70 Score=740.48 Aligned_cols=930 Identities=18% Similarity=0.247 Sum_probs=675.7
Q ss_pred HhhhhhhccHhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCCCCCcccCCCcchhhHHHHHHHHHHhhHHH
Q 000149 913 ACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQW 992 (2037)
Q Consensus 913 ~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~~~~i~~Ei~~VL~~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W 992 (2037)
+.+.+.-+|...++.+.=+++..+...-+++++.++..++...+..+ +.. . ...|--. -++.|
T Consensus 2341 ~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~------~h~--~---q~~~~pn------vln~~ 2403 (3550)
T KOG0889|consen 2341 PLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSG------YHI--K---QQGCRPN------VLNAL 2403 (3550)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccc------hhh--h---hhccchh------HHHHH
Confidence 44455667889999999999999999888888888888888887432 111 0 0111111 22333
Q ss_pred HHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhhcCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcC
Q 000149 993 VDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSG 1072 (2037)
Q Consensus 993 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~ 1072 (2037)
+...-+ +.. .-.+|++++...+...|+|++++.++|.+......
T Consensus 2404 v~s~~~-----------------------------------~~~-~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~ 2447 (3550)
T KOG0889|consen 2404 VESLVK-----------------------------------IVP-PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM 2447 (3550)
T ss_pred HHHHHh-----------------------------------hcc-CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 332110 010 13689999999999999999999999998765421
Q ss_pred CCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHHccCCC------
Q 000149 1073 SFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPT------ 1146 (2037)
Q Consensus 1073 ~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~------ 1146 (2037)
. | .....+..++|.+||..|+|-|+.+|+|+.|.....+.+++.||+.|.|+.||..||++.-+.-.
T Consensus 2448 ~-~------~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~ 2520 (3550)
T KOG0889|consen 2448 E-N------TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYS 2520 (3550)
T ss_pred h-h------hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCC
Confidence 1 1 11234678999999999999999999999999999999999999999999999999999753221
Q ss_pred ch---hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCc
Q 000149 1147 SV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNA 1223 (2037)
Q Consensus 1147 ~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~ 1223 (2037)
.. -++..|++|..+|.|||.+.++++.... +..-+|||||+.+|..+++.+.+..+ +..+..
T Consensus 2521 ~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---------~~llle~aWrlsdw~~~~~~l~~~~~------~~~~~~ 2585 (3550)
T KOG0889|consen 2521 ESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---------YELLLECAWRLSDWNDQKDALEQKAK------SLSDVP 2585 (3550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------ceeeeehhccCCcchhHHHHHHHhhh------ccCCCC
Confidence 11 2446899999999999999998854221 24678999999999999998876543 233445
Q ss_pred chHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhcccc-cccc
Q 000149 1224 SFDMDVAKILQAMMKKDHF---SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSF-LEKS 1299 (2037)
Q Consensus 1224 ~f~~~l~kaLlal~~~d~~---~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~-~~~~ 1299 (2037)
.|...++++++++.+.+.. ++...|.++-+.-+..|.+.+..+++.++++++.+|++.|++|+.++..+... ..++
T Consensus 2586 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n 2665 (3550)
T KOG0889|consen 2586 GFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQN 2665 (3550)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 7888999999998775543 66778888888888999999888999999999999999999999998865322 1233
Q ss_pred CCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCC-----C----------------CCchhHHHHHHHHHH
Q 000149 1300 FLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS-----G----------------LGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1300 ~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~-----~----------------l~~~~~~~WL~~Akl 1358 (2037)
....-.+++.++++|++|+|++++++..|..+..||+++|+.. . .-.+.++.-+++||+
T Consensus 2666 ~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakv 2745 (3550)
T KOG0889|consen 2666 LDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKV 2745 (3550)
T ss_pred cchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHH
Confidence 3345578999999999999999999999999999999998631 0 013556666899999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHH--HHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGAPNVHMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~p~~~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
|||+|..++|.+-+.+.- +.|+..+..| |+--+-..+-+--.++..+++ +++++
T Consensus 2746 Arkh~l~~vcl~~L~~iy--tlp~veiqdaF~K~req~~c~l~~~~e~~~gLe-----vi~sT----------------- 2801 (3550)
T KOG0889|consen 2746 ARKHGLPDVCLNQLAKIY--TLPNVEIQDAFQKLREQAKCYLQNKNELKTGLE-----VIEST----------------- 2801 (3550)
T ss_pred HHhcCChHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHhcChHHHHHHHH-----HHhcc-----------------
Confidence 999999999999999884 4455444333 332111111111123444433 22221
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~ 1516 (2037)
++..-.++++|..+-+.|.+..+.|. .+++.+.|..|++++....|+|+.||+|+|+++...+. +
T Consensus 2802 ----Nl~yF~~~q~aeff~lkG~f~~kL~~--~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~----n----- 2866 (3550)
T KOG0889|consen 2802 ----NLMYFSDRQKAEFFTLKGMFLEKLGK--FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPV----N----- 2866 (3550)
T ss_pred ----cHHHHhhHHHHHHHHhhhHHHHHhcC--cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCc----c-----
Confidence 22233456789999999999999997 78999999999999999999999999999999843221 0
Q ss_pred chhhhhchHHHHHHHHHHHhccCC-cchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhh
Q 000149 1517 SEKRWWFYVPDVLLFYAKGLHRGH-KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQW 1595 (2037)
Q Consensus 1517 ~~~~~~~~l~~ai~~Yl~sl~~g~-~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~w 1595 (2037)
..++.+|+.||++|+.+++ .+.+..+.|+|||.=- ++..+.+.++++++++.||+|.|
T Consensus 2867 -----i~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~----------------dda~~~l~~~~~k~l~~ip~~~w 2925 (3550)
T KOG0889|consen 2867 -----ISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSF----------------DDSLGTLGDVFDKFLGEIPVWNW 2925 (3550)
T ss_pred -----cHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh----------------ccccchHHHHHHHhhccCCchhh
Confidence 2467899999999999874 4689999999888722 22334678899999999999999
Q ss_pred HhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCc-HHHHH---------------HHHHHHHHHH
Q 000149 1596 LTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-PSRRE---------------AAAEIIQAAK 1659 (2037)
Q Consensus 1596 lt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~-~~R~~---------------~a~~Il~~~k 1659 (2037)
++|+|||+..+.|.+ .+.+..|+.++++.||||++|++.....-.. .+|.. |..+|....+
T Consensus 2926 l~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p~~r~~~i~~~~r 3002 (3550)
T KOG0889|consen 2926 LYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDPMGRPSKISQKQR 3002 (3550)
T ss_pred hhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcHHHHHHHhh
Confidence 999999999999998 7889999999999999999999987642211 11111 2223333333
Q ss_pred hcCCCC-------C----------chhhHHHHHHH---------------------------HHHHHHHHHhccCCc---
Q 000149 1660 KGSAHG-------N----------SANNLFGQFTS---------------------------LIDHLIKLCFHAGQS--- 1692 (2037)
Q Consensus 1660 ~~~~~~-------~----------~~~~li~~~~~---------------------------l~~~Li~l~~~~~~~--- 1692 (2037)
...+.. + ...++..++.. +...+.. +......
T Consensus 3003 ~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~al~~-~~~~~~~~r~ 3081 (3550)
T KOG0889|consen 3003 NLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVNALLN-IDGIQNGNRL 3081 (3550)
T ss_pred ccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHHHHHH-Hhhhcccccc
Confidence 222200 0 00111111111 1111111 1100000
Q ss_pred -----ccccc---------------------chhhhhHHHHhhccCCcc-------------------------ccc---
Q 000149 1693 -----KSRTI---------------------NISTEFSALKRMMPLGII-------------------------MPI--- 1718 (2037)
Q Consensus 1693 -----~~~~~---------------------~ls~~f~~l~~~~~~~li-------------------------~pi--- 1718 (2037)
..... .+..||......+|+..- .++
T Consensus 3082 ~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE~~ 3161 (3550)
T KOG0889|consen 3082 GIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLEEK 3161 (3550)
T ss_pred ccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHhcccccccHHhh
Confidence 00000 011122111110111100 011
Q ss_pred --------ccccccccCCCCCCCCCCCCCCCccCCCCcEEeeeccceEEec-CCCceeEEEEEecCCCeeeEEe--cCCC
Q 000149 1719 --------QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILS-SLQRPKKIVLLGSDGIKRPFLC--KPKD 1787 (2037)
Q Consensus 1719 --------q~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~~v~V~~-S~~~Prki~i~GsdGk~y~fLv--K~~d 1787 (2037)
++.-.+++|+++.... .++ +..+.|.+|.|.|+++. ...+.||++++|+||+.|+|.+ ++-.
T Consensus 3162 s~~L~~F~hq~~evEiPGqyl~~k--~~~-----~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~ 3234 (3550)
T KOG0889|consen 3162 SRFLSNFSHQFDEVEIPGQYLLDK--SNN-----NYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLR 3234 (3550)
T ss_pred chHHhcccccCCcccCChHHhccc--chh-----hhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCC
Confidence 1133456666554332 111 46789999999999984 6899999999999999997665 5678
Q ss_pred cchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHH
Q 000149 1788 DLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIK 1867 (2037)
Q Consensus 1788 DlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~ 1867 (2037)
+-|.++|++|+++++|..+.+++|++||++.+.++.++|++++..|+|..++..||++|+++++++.|...+.+......
T Consensus 3235 ~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d 3314 (3550)
T KOG0889|consen 3235 NSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFD 3314 (3550)
T ss_pred CccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888554433222222
Q ss_pred HHHHHHhc--CCChhHH-----HHHhhcCCCch-hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 000149 1868 RIYDQFQG--KIPEDEM-----LKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2037)
Q Consensus 1868 ~~~~~~~~--~~~~~~~-----~~~~i~~~~pp-vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eN 1939 (2037)
++-..... ..+.... ++.....+.|. ++++||.++|++|..+|.+|++|+.++|+.++.+|++.+|.|.|+.
T Consensus 3315 ~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k 3394 (3550)
T KOG0889|consen 3315 RLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAK 3394 (3550)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 22111111 1222222 33333345674 8999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCcEEEeeccccc-ccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1940 ILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1940 ILid~~tG~vvHIDF~~~f-~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+++.++||.+..-||-+-. +..+.+...|.|||||||||++ .|..|+||
T Consensus 3395 ~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg 3445 (3550)
T KOG0889|consen 3395 LTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEG 3445 (3550)
T ss_pred eeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhh
Confidence 9999999999999996544 5566677899999999999999 68788887
No 4
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-70 Score=756.08 Aligned_cols=871 Identities=25% Similarity=0.400 Sum_probs=672.0
Q ss_pred cCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccCC
Q 000149 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLS 1116 (2037)
Q Consensus 1038 L~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~~ 1116 (2037)
-..|+..+|...+..|++|+.|++|.|..+.... ..++++.|..+...++.+|.+.|+... ++...
T Consensus 1220 plpi~~~~L~~~~~~c~a~~~~l~y~el~~~~~~-------------~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~ 1286 (2341)
T KOG0891|consen 1220 PLPIPIKTLGLYAEKCRAYAKALHYKELEFLKEP-------------SPDTIESLISINNKLQQREAAIGVLKYAQQHSE 1286 (2341)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHhhcccchhHHHhccHHHHHHhHHH
Confidence 3467778999999999999999999999887541 236789999999999999999999763 44457
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh-ccchhhhhhHhHHHHHHHHh
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI-SRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~-~~~p~~~~~l~~~~~EAAWr 1195 (2037)
++.+..|+|+..+|++|+.+|+........+.+...|.++|+..+|+|+.+......-+ ....+.....++.++.++|-
T Consensus 1287 l~~~e~w~e~l~~~~d~l~a~~~~~~~~~~~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~ 1366 (2341)
T KOG0891|consen 1287 LQLKETWYEKLHRWEDALAAYELREKAGDSSFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWG 1366 (2341)
T ss_pred HHHhhhcccccccchhHhhhhhcccchhhhhHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhc
Confidence 77888999999999999999997766555677778899999999999998874432211 12223455678899999999
Q ss_pred cCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHH
Q 000149 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV 1275 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~ 1275 (2037)
+++|+.+.+|+...+. .+++..++++.+++.+.+.......++.+|..+...+++...|||+|+|-.++
T Consensus 1367 ~~~w~~~~~~~s~~~~-----------~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~ 1435 (2341)
T KOG0891|consen 1367 LGQWDTMAEYVSVMSE-----------DSQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMV 1435 (2341)
T ss_pred cccchhhhhhcccccc-----------cchhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhh
Confidence 9999999998776553 35777888999999888888888889999999999998888899999999999
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~ 1355 (2037)
..+++.|+|+++.+.... .....+.+.|..|+..++.....|+.++.+|..++++. +.+..|+++
T Consensus 1436 ~~~~~~e~E~~~~~k~~~-----------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~----~~~~~~ik~ 1500 (2341)
T KOG0891|consen 1436 RAQMLAELEEIIEYKKLP-----------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQ----EDMEMWIKF 1500 (2341)
T ss_pred hhhhhhhHHHHHHhhccc-----------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCC----cchHHHHHH
Confidence 999999999999987531 34456788999999999999999999999999999987 446789999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1356 AKLCRLAGHYETATRAILEAQAS------------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~------------~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
|-+|||+|+...+...+.....- ..|.....+.|.+|..+....|++.++.....+..+. ...
T Consensus 1501 a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~~~~~~~~~~~~~s~l~~d~-----~~~ 1575 (2341)
T KOG0891|consen 1501 ASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDSKDEAINTLQEFTSTLNSDL-----GSD 1575 (2341)
T ss_pred HHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHHHHHHhHHHhhccchHHHHHhHHHHHHHHhhc-----CCC
Confidence 99999999999998887654321 2466788899999999999999999988765432110 000
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccchHHHHHHHHh--hh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ----KQKEDVITLYSRVRELQPMWEKGYFYMAK--YC 1497 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~----~~~~~i~~~Y~~A~~l~~~weK~~~~la~--y~ 1497 (2037)
......-+ ............|++++..|.|-...-. .....+...|..|+..++.|+|+|+.||. |+
T Consensus 1576 ~~~~~~~~-------~~~~~~~~~~l~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~ 1648 (2341)
T KOG0891|consen 1576 PDELLSEP-------TEAEKQEYTKLLARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE 1648 (2341)
T ss_pred chhhhhcc-------cchhhhHHHHHHHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 00000000 0111123456789999999999865432 22467788999999999999999999873 44
Q ss_pred HHHHHHHHhhh--hh--c---c--cCC--cchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCC
Q 000149 1498 DDVLVDARKRQ--EE--N---S--EIG--PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGS 1566 (2037)
Q Consensus 1498 d~l~~~~~~~~--~~--~---~--~~~--~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~ 1566 (2037)
...+.....+. .. + . ..+ -+......|+..++.+|++++....+...|...|+++|||++|...
T Consensus 1649 ~V~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~----- 1723 (2341)
T KOG0891|consen 1649 VVQMLKQVTKAKYAPGANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNK----- 1723 (2341)
T ss_pred HHHhhhhhhccccCCccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCc-----
Confidence 33321111110 00 0 0 000 0111234588999999999999888777899999999999999732
Q ss_pred CChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHH
Q 000149 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPS 1646 (2037)
Q Consensus 1567 ~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~ 1646 (2037)
.++..+...+..+|.+.|+.++|||++||.-+...+.+.+.+++..+++.+||+..|++.++.+|....
T Consensus 1724 -----------~v~q~i~~~~~~~~i~~wl~~ipqLiari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~ 1792 (2341)
T KOG0891|consen 1724 -----------DVYQALLEGINLIPIDTWLEVIPQLIARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVA 1792 (2341)
T ss_pred -----------hHHHHHHhhhhHhhHHHHHHhHHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHH
Confidence 155666777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHH------hccCCcccccc-----------------------
Q 000149 1647 RREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLC------FHAGQSKSRTI----------------------- 1697 (2037)
Q Consensus 1647 R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~l~------~~~~~~~~~~~----------------------- 1697 (2037)
|++.+..|+++++.+++ .++++....++++++++ |+++.+.+...
T Consensus 1793 r~~~a~~ile~m~~~~~------~Lv~~a~lvs~elir~a~lwhe~w~e~ldeAsr~yf~~~nv~~m~~~l~p~~~~l~~ 1866 (2341)
T KOG0891|consen 1793 RQKAALSILEKMREHSP------TLVRQARLVSEELIRVAILWHEQWHEGLEEASRLYFSDHNVEGMFAVLRPLHEMLER 1866 (2341)
T ss_pred HHHhHHHHHHHHHHhhH------hhhhhhhhhHHHHHHHHhhhHhhhhhccHHHHHHHhhHhhHHHHHHHHhHHHHHhhc
Confidence 99999999999998765 46777777778887765 34433322211
Q ss_pred --------chhhhhH--------HHHhhccCCccccccc--------------------cc-----c-cccCCCCCCCCC
Q 000149 1698 --------NISTEFS--------ALKRMMPLGIIMPIQQ--------------------SL-----T-VTLPPQDANLTE 1735 (2037)
Q Consensus 1698 --------~ls~~f~--------~l~~~~~~~li~piq~--------------------~l-----~-~~LP~~~~~~~~ 1735 (2037)
++...|+ ..+++...+.+.-+.+ .+ + --++..+..+..
T Consensus 1867 ~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~v 1946 (2341)
T KOG0891|consen 1867 GPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAV 1946 (2341)
T ss_pred CCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceecc
Confidence 1111110 0011100000000000 00 0 012223344445
Q ss_pred CCCCCCccCCCCcEEeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCc
Q 000149 1736 SPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2037)
Q Consensus 1736 ~~~~~pfp~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR 1815 (2037)
+++|.|- ...+.|.+|.+++.|+.|++|||++.|+||||+.|.|++|+++|+|||+|+||+|+++|.++..+.++.||
T Consensus 1947 Pgty~~~--~~~i~i~~f~~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr 2024 (2341)
T KOG0891|consen 1947 PGTYDPG--KPIIRIQSFEPKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRR 2024 (2341)
T ss_pred CCccCCC--ceEEehhhccHHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHH
Confidence 6666553 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhc------CCChhHHHHHhhcC
Q 000149 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG------KIPEDEMLKTKILP 1889 (2037)
Q Consensus 1816 ~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~ 1889 (2037)
+|.|.+|.|+|++++.|+++||+|+.|++.++..+.... +.+ .+...+ ...+... -+.+.+.|...+-.
T Consensus 2025 ~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k-~i~---l~~eh~-~~~~~~l~~~~ltl~qk~~vfe~~~~~ 2099 (2341)
T KOG0891|consen 2025 NLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK-KIP---LNIEHR-VMLQMAPDYDHLTLMQKVEVFEYALSN 2099 (2341)
T ss_pred HHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh-ccC---CcchHH-HHHhcCccccchhhhhHHhHhHHHhhc
Confidence 999999999999999999999999999999999876654 221 122211 1111110 12233445444444
Q ss_pred CCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC-CCC
Q 000149 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE-KPE 1968 (2037)
Q Consensus 1890 ~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~-~pE 1968 (2037)
.-...+++-++-..+.++.|+..|.+||+|.|+|||+|||+|+|||||+|.|+|+.||+++|||||.||+..+.++ .||
T Consensus 2100 t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe 2179 (2341)
T KOG0891|consen 2100 TQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPE 2179 (2341)
T ss_pred CcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccc
Confidence 4445777878888899999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred CCCcccChhHHh-hcccchhh
Q 000149 1969 LVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1969 ~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
.+||||||+.+. +-+.|++|
T Consensus 2180 ~~pfRlTrmli~amev~gl~g 2200 (2341)
T KOG0891|consen 2180 KVPFRLTRMLINAMEVTGIEG 2200 (2341)
T ss_pred cccHHHHHHHHHhHHHHhhhh
Confidence 999999999998 54444443
No 5
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.2e-58 Score=649.97 Aligned_cols=397 Identities=28% Similarity=0.441 Sum_probs=300.0
Q ss_pred CCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCc-h
Q 000149 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNS-A 1668 (2037)
Q Consensus 1590 lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~-~ 1668 (2037)
++...|+++++|+.+|+.+++.+ |+..+...+|.+..|...+...+....+....+..++........... .
T Consensus 1634 l~~~~~~~~l~q~~~r~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D 1706 (2105)
T COG5032 1634 LLHLLFEPILAQLLSRLSSENNK-------ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKID 1706 (2105)
T ss_pred hhhhhHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 56666999999999999999965 777788888999998887766665556666666666655110000000 0
Q ss_pred hhHHHHHHHHH-HHHHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCC
Q 000149 1669 NNLFGQFTSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDL 1747 (2037)
Q Consensus 1669 ~~li~~~~~l~-~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~ 1747 (2037)
.....+...+. +.+-+.+ ...+. .....+. +..|.....|- +....+|+.+... .+.
T Consensus 1707 ~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~---~~~~~~~~~~~--~~e~~~P~~~~~~-----------k~~ 1764 (2105)
T COG5032 1707 ISLLNLSRKLYISVLRSIR--KRLKR----LLELRLK---KVSPKLLLFHA--FLEIKLPGQYLLD-----------KPF 1764 (2105)
T ss_pred hhhhhhhHHHHHHHHHHHH--HHhHH----HHHHHhc---ccCHHHHhccc--cccccCCcccccC-----------CCC
Confidence 00011111111 1111110 00000 0000111 11111111121 4566677654321 367
Q ss_pred cEEeeeccceEEecC-CCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeE
Q 000149 1748 PTISGIADEAEILSS-LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2037)
Q Consensus 1748 v~I~~f~~~v~V~~S-~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViP 1826 (2037)
|+|.+|.|++.+++| .++||+++++|+||+.|+|++|++||+|||+|+||++++||++|+++++|+||+++|++|+|+|
T Consensus 1765 v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vip 1844 (2105)
T COG5032 1765 VLIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP 1844 (2105)
T ss_pred ceEEEecCceeeeecccccceEEEEEecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEe
Confidence 899999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhc-CCChhHHHHHhhcCCCchhHHHHHHHhCCC
Q 000149 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG-KIPEDEMLKTKILPMFPPVFHKWFLTTFSE 1905 (2037)
Q Consensus 1827 Ls~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~ 1905 (2037)
++|+||+||||+|++|+|+|+.+++++.+...... +++...... +....+.+.......+||+|++||.+.||+
T Consensus 1845 ls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~ 1919 (2105)
T COG5032 1845 LSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQE-----KKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPN 1919 (2105)
T ss_pred ccCCcceEEEecCcchHHHHHHHHhhhcCCChhHH-----hhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCC
Confidence 99999999999999999999999998776543211 122111111 111223444566678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeeccccc-ccCCCCCCCCCCCcccChhHHh-hcc
Q 000149 1906 PAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQVRKS-YGL 1983 (2037)
Q Consensus 1906 p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f-~~g~~l~~pE~VPFRLT~nmvd-~G~ 1983 (2037)
|.+|+.+|+||++|+|+|||+|||||+|||||+|||+|+.||+++|||||+|| +++..++.||.||||||+||++ +|.
T Consensus 1920 ~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~ 1999 (2105)
T COG5032 1920 PEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGV 1999 (2105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCc
Confidence 99999999999999999999999999999999999999889999999996554 5556678899999999999999 899
Q ss_pred cchhh--HHHHHhhHHHhhh---hhhHhhcccCCCC-----ccchhh
Q 000149 1984 CAMHF--IVILSPLFFPLKK---ILIYVCLVPQPSS-----FYSCEY 2020 (2037)
Q Consensus 1984 ~g~e~--~~~~~~~f~~~~k---~~~~~~~l~~~~s-----~~~~~~ 2020 (2037)
.|.|| ...+...|.++|| .|..++|+|..|. ..||+.
T Consensus 2000 ~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~ 2046 (2105)
T COG5032 2000 SGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFR 2046 (2105)
T ss_pred cchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcccc
Confidence 99995 6667788899999 8888999999998 999998
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=5.7e-56 Score=526.52 Aligned_cols=262 Identities=33% Similarity=0.512 Sum_probs=220.1
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|.|+|.|++|+++||+|+++|+||+.|.||+|++||+|+|+|+|||+++||++|++++||++|+|++++|+|+||++
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccC-chHHHHHHHHHhcCC--ChhHHHHHhhcCCCchhHHHHHHHhCCCh
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT-NPQIKRIYDQFQGKI--PEDEMLKTKILPMFPPVFHKWFLTTFSEP 1906 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~ppvl~~~f~~~f~~p 1906 (2037)
++||||||+|+.||++|+++++...+....... .....+.+....... ...+. .+++++.++|+|++||...|++|
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-f~~i~~~~~p~l~~~f~~~~~~~ 159 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKV-FLKICKNFRPVFRYFFLEKFLDP 159 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHhCcHHHHHHHHHHCcCH
Confidence 999999999999999999987643333221100 001111221111111 11223 35677888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccc
Q 000149 1907 AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCA 1985 (2037)
Q Consensus 1907 ~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g 1985 (2037)
.+||.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+.++.||.||||||+||++ +|+.|
T Consensus 160 ~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g 239 (279)
T cd05171 160 QDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITG 239 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred hhh--HHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1986 MHF--IVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1986 ~e~--~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
++| ...+...+.++|+ .|..+++++-.
T Consensus 240 ~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~ 271 (279)
T cd05171 240 VEGVFRRCCEKTLEVLRDNKDAILTILEVLLY 271 (279)
T ss_pred CcchHHHHHHHHHHHHHcChHHHHHHHHHHHh
Confidence 987 3444456666666 55555555433
No 7
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=4.8e-55 Score=521.04 Aligned_cols=256 Identities=30% Similarity=0.495 Sum_probs=217.8
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+|+|.|++|+++||+|+++|+||+.|+||+|++||+|||+|+||+++++|.+|++++||++|+|.++||+|||+++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHH---HhcCC---ChhHHHHHhhcCCCc-hhHHHHHHHh
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ---FQGKI---PEDEMLKTKILPMFP-PVFHKWFLTT 1902 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~i~~~~p-pvl~~~f~~~ 1902 (2037)
++||||||+|+.|+.+|++++++..+.... .....+... ..... .+.+.++ ++++..| ++|++||+..
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~~-~i~~~~~~~~l~~~~~~~ 155 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLN----LEHRLMELKSAPDYDNLTLIQKLEVFE-YALNNTPGDDLRKILWLK 155 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChh----HHHHHHHHHhhhhhhhCCHHHHHHHHH-HHHHhCCHHHHHHHHHHh
Confidence 999999999999999999998876554321 111111000 00111 1233444 3454455 5999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-
Q 000149 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS- 1980 (2037)
Q Consensus 1903 f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd- 1980 (2037)
|++|..|+.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+++ +.||.|||||||||++
T Consensus 156 ~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 156 SPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 6899999999999999
Q ss_pred hcccchhh--HHHHHhhHHHhhh---hhhHhhccc
Q 000149 1981 YGLCAMHF--IVILSPLFFPLKK---ILIYVCLVP 2010 (2037)
Q Consensus 1981 ~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l~ 2010 (2037)
+|++|++| ...+...+.++|+ .+..+++++
T Consensus 236 lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f 270 (280)
T cd05169 236 LGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAF 270 (280)
T ss_pred hCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 89999987 4555567777776 555555543
No 8
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=1.4e-54 Score=520.19 Aligned_cols=260 Identities=27% Similarity=0.510 Sum_probs=215.2
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+++|.|++|+++||+|+++|+||+.|+||+|++||||+|+|+|||+++||.+|++++++++|+|.|+||.||||++
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCcc-----------------ccCchHHHHHHHHHhc-CC------C--h---h
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDR-----------------QKTNPQIKRIYDQFQG-KI------P--E---D 1880 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~-----------------~~~~~~~~~~~~~~~~-~~------~--~---~ 1880 (2037)
++||||||+|+.||++|++.++++.+.... .+......++...... .. . . .
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999999999999999987765432100 0000011122111110 00 0 0 1
Q ss_pred HHHHHhhcCCCch-hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1881 EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1881 ~~~~~~i~~~~pp-vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
....+++++..|+ .+.++++.++++|++||.+|++||+|+|+|||+|||||||||||+|||||+.||+++|||||++|+
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 1223456667776 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccChhHHh-hcccchhh--HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1960 KGLLLEKPELVPFRLTQVRKS-YGLCAMHF--IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1960 ~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
+|+.+++||.|||||||||++ +|++|++| ...+...+..+|+ .|..++++
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~ 296 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEA 296 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999999999999 89999998 3344455566666 44444443
No 9
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=1.7e-53 Score=492.14 Aligned_cols=217 Identities=33% Similarity=0.550 Sum_probs=200.0
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|.++|.|++|+++||+++++|+||+.|+||+|++||+|||+|+|||++++|.+|++++++++|++.+++|+|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|+++|+++ +++++||.+.+++|++|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~~ 117 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEAF 117 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHHH
Confidence 99999999999999999754 35778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CCCCCCCCcccChhHHh-hcccchh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LEKPELVPFRLTQVRKS-YGLCAMH 1987 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~~pE~VPFRLT~nmvd-~G~~g~e 1987 (2037)
+.+|++|++|+|+||++|||||||||||+|||||+.||+++|||||++|+++++ ++.||.|||||||||++ +|+.|.+
T Consensus 118 ~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~ 197 (235)
T cd05172 118 LSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 78899999999999999 8999999
Q ss_pred h--HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1988 F--IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1988 ~--~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
| ...+...+..+|+ .+..++++
T Consensus 198 G~f~~~~~~~~~~Lr~~~~~l~~~l~~ 224 (235)
T cd05172 198 GLLRSCMVHTLRALRNERHLLLSTMDV 224 (235)
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 8 3334455566666 44444444
No 10
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=2.5e-53 Score=495.81 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=195.7
Q ss_pred EeeeccceEEe-cCCCceeEEEEEecCCCeeeEEec--CCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeE
Q 000149 1750 ISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLCK--PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2037)
Q Consensus 1750 I~~f~~~v~V~-~S~~~Prki~i~GsdGk~y~fLvK--~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViP 1826 (2037)
|++|.|+|+|+ +|.++||||+++|+||+.|+|||| +++|+|+|+|+|||+++||.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999986 688999999999999999999999 478999999999999999999999999999999999999999
Q ss_pred eCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcC-CCch-hHHHHHHHhCC
Q 000149 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP-MFPP-VFHKWFLTTFS 1904 (2037)
Q Consensus 1827 Ls~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pp-vl~~~f~~~f~ 1904 (2037)
|++++|||||++|+.|++++++. ..+.+ ++++. ..|+ +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~-----------------------------~~~~~-~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED-----------------------------KLEIY-NEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH-----------------------------HHHHH-HHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999999754 01122 22332 3554 99999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-hc
Q 000149 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS-YG 1982 (2037)
Q Consensus 1905 ~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd-~G 1982 (2037)
+|++||.+|++||+|+|+|||+|||+|||||||+|||||..||+++|||||++|++|..+ +.||.|||||||||++ +|
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999876 7999999999999999 89
Q ss_pred ccchhhHHHHHhhHHH
Q 000149 1983 LCAMHFIVILSPLFFP 1998 (2037)
Q Consensus 1983 ~~g~e~~~~~~~~f~~ 1998 (2037)
++|++| .|+.++.+
T Consensus 211 ~~g~eG--~f~~~~~~ 224 (253)
T cd05163 211 PIGLEG--ILTSSMMA 224 (253)
T ss_pred CcCcCC--cHHHHHHH
Confidence 999999 45444433
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.5e-52 Score=485.37 Aligned_cols=220 Identities=64% Similarity=1.068 Sum_probs=204.8
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|++++.|++|+++||+++++|+||+.|.||+|++||||||+|+||+++++|.+|.++++|+++++++++|+|+|+++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|+++|+++++ ||+|++||.++|++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~~ 120 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSAW 120 (237)
T ss_pred CCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHHH
Confidence 9999999999999999987632 468999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+.+|++|+.|+|+||++|||||+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||++ +|+.|.+|
T Consensus 121 ~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g 200 (237)
T cd00892 121 LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999887
Q ss_pred --HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1989 --IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
...+...+..+|+ .+..++++
T Consensus 201 ~F~~~~~~~~~~Lr~~~~~l~~~l~~ 226 (237)
T cd00892 201 LFRKSCEVTLRLLRSNKETLMSVLET 226 (237)
T ss_pred chHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4555566777777 45555444
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=5.6e-51 Score=468.22 Aligned_cols=204 Identities=50% Similarity=0.824 Sum_probs=192.9
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+++|.|++|+++||+|+++|+||+.|.||+|++||+|||+|+||+++++|.+|+++.||++|++++++|.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|++ ++|++||..+|++|++|
T Consensus 81 ~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 112 (222)
T cd05164 81 RSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQW 112 (222)
T ss_pred CCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 25667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
|.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++++.++.||.|||||||||++ +|+.|.+|
T Consensus 113 ~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G 192 (222)
T cd05164 113 FAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG 192 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999887
Q ss_pred --HHHHHhhHHHhhh
Q 000149 1989 --IVILSPLFFPLKK 2001 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k 2001 (2037)
...+...+.++|+
T Consensus 193 ~f~~~~~~~~~~Lr~ 207 (222)
T cd05164 193 LFRKICEQTLEVFRK 207 (222)
T ss_pred hHHHHHHHHHHHHHh
Confidence 4555566677776
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=7.9e-48 Score=443.05 Aligned_cols=210 Identities=32% Similarity=0.545 Sum_probs=194.5
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
+.+|.+.++|++|+++||+++++|+||+.|+|++|++||+|||+|+||+++++|.+|++++ ++++++++|.|+|+++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 3578899999999999999999999999999999999999999999999999999999886 6899999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|++ ++|++||...+++|++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 36778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+.+|++|+.|+|+||++|||+|+|||||+||||++.||+++|||||++|++++++..||.||||||+||++ +|..|.+|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999998899999999999999999998899999999999999 89888876
Q ss_pred --HHHHHhhHHHhhh---hhhHhhccc
Q 000149 1989 --IVILSPLFFPLKK---ILIYVCLVP 2010 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k---~~~~~~~l~ 2010 (2037)
...+...+..+|+ .+..+.++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~ 216 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLM 216 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHh
Confidence 5667788888888 444455544
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=1.2e-47 Score=464.29 Aligned_cols=238 Identities=22% Similarity=0.335 Sum_probs=210.0
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.++|.+|. +++.|++|+++|+++++.|+| |+.|.||+|++||||||+++||++++||.+|+++. .+|++++
T Consensus 54 ~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~----ldl~l~~ 129 (352)
T cd00891 54 DPRLEIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEG----LDLRMTP 129 (352)
T ss_pred CCceEEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 4668999996 679999999999999999999 99999999999999999999999999999999874 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++||||||+|+.|+++|.+++....|. ++ .+.+++||.+
T Consensus 130 Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~~--------------------------~~-------~~~l~~~~~~ 176 (352)
T cd00891 130 YGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGA--------------------------FK-------DNPLMNWLKK 176 (352)
T ss_pred EEEEEccCCceEEEEeCCCccHHHHHHhcCccccc--------------------------cc-------cchHHHHHHH
Confidence 99999999999999999999999998763211110 11 1357899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VPFRLT~nmv 1979 (2037)
.+++|..|..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|++++. +. .||.||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv 255 (352)
T cd00891 177 KNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMA 255 (352)
T ss_pred hCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHH
Confidence 999999999999999999999999999999999999999999 6999999999999997754 33 59999999999999
Q ss_pred h-hcccchh----hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCAMH----FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g~e----~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..|.+ |...+..+|.++|+ .+..++++|. ++-+||++.
T Consensus 256 ~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~-~~~lp~~~~ 304 (352)
T cd00891 256 YVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLML-SAGIPELQS 304 (352)
T ss_pred HHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhc-cCCCCccCc
Confidence 9 7877643 67777789999999 7788888887 467999984
No 15
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=6.1e-47 Score=456.88 Aligned_cols=237 Identities=22% Similarity=0.350 Sum_probs=207.0
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+|+|++||||||+++||++++||++|+++. .+|++++
T Consensus 54 ~p~~~~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~----ldL~l~~ 129 (353)
T cd05166 54 NPALDVKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEG----LDLRMIT 129 (353)
T ss_pred CCceEEEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCC----CCceeEE
Confidence 3556788885 799999999999999999999 99999999999999999999999999999999864 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|.+++ |.. +. ++ .+.+++||..
T Consensus 130 Y~vip~~~~~GlIE~V~ns~tl~~I~~~~----g~~-----------------~~------~~-------~~~l~~~l~~ 175 (353)
T cd05166 130 FRCLSTGYDRGMVELVPDAETLRKIQVEE----GLT-----------------GS------FK-------DRPIAKWLMK 175 (353)
T ss_pred EEEEEcCCCcceEEEeCCchhHHHHHHHh----Ccc-----------------cc------cc-------chhHHHHHHH
Confidence 99999999999999999999999997642 110 00 00 1368899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+|||+|||||+||||++||||| .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv 254 (353)
T cd05166 176 HNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999987654 49999999999999
Q ss_pred h-hcccc------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCA------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..| ..|...+..+|..+|+ .+..++++|. +|-+||++.
T Consensus 255 ~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml-~s~lp~~~~ 305 (353)
T cd05166 255 YVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMA-CSGLPELSK 305 (353)
T ss_pred HHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHh-cCCCcccCc
Confidence 9 54332 2456677789999999 7778888885 588999984
No 16
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=9.7e-47 Score=454.10 Aligned_cols=240 Identities=19% Similarity=0.296 Sum_probs=208.1
Q ss_pred CCCCcEEeee-ccceEEecCCCceeEEEEEecC-----CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccc
Q 000149 1744 ASDLPTISGI-ADEAEILSSLQRPKKIVLLGSD-----GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2037)
Q Consensus 1744 ~~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd-----Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L 1817 (2037)
..+.++|.++ .+++.|++|+++|++|++.|+| |+.|.+|+|++||||||+++||++++||++|+++. .+|
T Consensus 58 l~P~~~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~----ldL 133 (366)
T cd05165 58 LNPSLKLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEG----LDL 133 (366)
T ss_pred CCCceeEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCC----CCc
Confidence 3567889998 4679999999999999999998 69999999999999999999999999999999874 689
Q ss_pred eeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHH
Q 000149 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2037)
Q Consensus 1818 ~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~ 1897 (2037)
++++|+|+|+++++|+||||+|+.|+++|.++... .. . + .|+ .+.+++
T Consensus 134 ~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~----~~----~-----------~------~f~-------~~~l~~ 181 (366)
T cd05165 134 RMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGG----NA----T-----------A------AFK-------KEALLH 181 (366)
T ss_pred eeEEEEEEEecCCceEEEEeCCchhHHHHHHhccc----cc----c-----------c------ccC-------cHHHHH
Confidence 99999999999999999999999999999765311 00 0 0 000 136789
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCCcccC
Q 000149 1898 WFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLT 1975 (2037)
Q Consensus 1898 ~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VPFRLT 1975 (2037)
||.+.+|++..|.++|.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|+++++ +. .||.||||||
T Consensus 182 wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~-~~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkLT 260 (366)
T cd05165 182 WLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVK-ETGQLFHIDFGHILGNYKSKFGINRERVPFVLT 260 (366)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEc-CCCCEEEEehHHhhccCCccCCCCCCCCCeeec
Confidence 9999999889999999999999999999999999999999999999 5999999999999998764 44 4999999999
Q ss_pred hhHHh-hcccc--------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1976 QVRKS-YGLCA--------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1976 ~nmvd-~G~~g--------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
++|++ +|..| -.|...+..+|.++|+ .|..++++|. ++-+||+.+
T Consensus 261 ~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~-~s~ip~~~~ 317 (366)
T cd05165 261 PDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMML-MSGLPELTS 317 (366)
T ss_pred HHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHh-cCCCcccCc
Confidence 99999 66544 3567778899999999 7777788886 588999984
No 17
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=6.8e-47 Score=445.97 Aligned_cols=223 Identities=23% Similarity=0.364 Sum_probs=199.3
Q ss_pred CCceeEEEEEecCCC--eeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1763 LQRPKKIVLLGSDGI--KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1763 ~~~Prki~i~GsdGk--~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
++|||+.+.+|+.+. .|+||+|++||||||+++||++++||++|+++ +++|++++|+|+|+++++||||||+|+
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ns 90 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPDT 90 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCCc
Confidence 789999999998765 99999999999999999999999999999986 478999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCCh-hHHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP-AAWFRARVAYAHT 1919 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p-~~w~~aR~~Ft~S 1919 (2037)
.|+++|.+++.. ..++|++||.+.|++| ..|..+|.+|++|
T Consensus 91 ~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S 132 (293)
T cd05168 91 VSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIES 132 (293)
T ss_pred hhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999766311 1257899999999986 5799999999999
Q ss_pred HHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccch----hhHHHHHh
Q 000149 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAM----HFIVILSP 1994 (2037)
Q Consensus 1920 lAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~----e~~~~~~~ 1994 (2037)
+|+|||+||||||||||++|||||+ +|+++|||||++|+++++...||.||||||++|++ +|..+. .|...+..
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~ 211 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLK 211 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHH
Confidence 9999999999999999999999996 99999999999999999988899999999999999 676553 35677778
Q ss_pred hHHHhhh---hhhHhhcccCCCCccchhhhhhhhhhh
Q 000149 1995 LFFPLKK---ILIYVCLVPQPSSFYSCEYSLMEHIEH 2028 (2037)
Q Consensus 1995 ~f~~~~k---~~~~~~~l~~~~s~~~~~~~~~~~~~~ 2028 (2037)
+|.++|+ .+..++++|..++-+|||..+.+.++.
T Consensus 212 ~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~ 248 (293)
T cd05168 212 GFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQ 248 (293)
T ss_pred HHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHH
Confidence 8999999 888899999999999999865555543
No 18
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=4e-46 Score=447.05 Aligned_cols=238 Identities=20% Similarity=0.351 Sum_probs=208.5
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.|.+|. +++.|++|+++|+++++.++| |+.|++|+|.+||||||++++|++++||++|+++. .+|++++
T Consensus 55 ~P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~----ldl~l~p 130 (354)
T cd05177 55 NPALRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEG----LDMQMII 130 (354)
T ss_pred CCCeEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcC----CCceEEE
Confidence 5678999996 589999999999999999999 89999999999999999999999999999999874 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++|+||||+|+.|+++|.+++ |... . ++ ...+.+||..
T Consensus 131 Y~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~~-----------------~------~~-------~~~l~~~~~~ 176 (354)
T cd05177 131 YRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLIG-----------------P------LK-------ENTIEKWFHM 176 (354)
T ss_pred EEEEecCCCceEEEEeCChHhHHHHHHhh----CCCc-----------------c------cc-------hhhHHHHHHH
Confidence 99999999999999999999999998652 1100 0 00 1257889999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.++++.+|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++++. .||+||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv 255 (354)
T cd05177 177 HNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEME 255 (354)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCeeccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999998764 49999999999999
Q ss_pred h-hcccch------hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1980 S-YGLCAM------HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1980 d-~G~~g~------e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
+ +|..|. .|...+..+|..+|+ .|..+.++|- ++-+||+...
T Consensus 256 ~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~-~s~iP~~~~~ 307 (354)
T cd05177 256 YFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMML-HAGLPELKDI 307 (354)
T ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCCCcccCcc
Confidence 7 444443 245566688999999 7778888887 7799999853
No 19
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=4e-46 Score=450.04 Aligned_cols=234 Identities=21% Similarity=0.319 Sum_probs=205.8
Q ss_pred cCCCCcEEeeec-cceEEecCCCceeEEEEEecCC---CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccce
Q 000149 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG---IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLY 1818 (2037)
Q Consensus 1743 p~~~~v~I~~f~-~~v~V~~S~~~Prki~i~GsdG---k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~ 1818 (2037)
|..+.+.|.++. +++.|++|+++|+++++.|+|| +.|.||+|++||||||+++||++++||.+|+++. ++|+
T Consensus 56 P~dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~----ldl~ 131 (350)
T cd00896 56 PLDPSIEITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKEN----LDLK 131 (350)
T ss_pred CCCCCeEEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCC----CCce
Confidence 335668888875 6899999999999999999999 9999999999999999999999999999999874 7899
Q ss_pred eccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHH
Q 000149 1819 IRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898 (2037)
Q Consensus 1819 i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~ 1898 (2037)
++||+|+|+++++||||||+ +.|+++|++++. .+.+|
T Consensus 132 l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~------------------------------------------~l~~~ 168 (350)
T cd00896 132 LTPYKVLATSPTDGLVEFIP-SVTLASILKKYG------------------------------------------GILNY 168 (350)
T ss_pred eEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH------------------------------------------HHHHH
Confidence 99999999999999999999 999999987631 14678
Q ss_pred HHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCccc
Q 000149 1899 FLTTFSEPAA----WFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRL 1974 (2037)
Q Consensus 1899 f~~~f~~p~~----w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRL 1974 (2037)
|...+|++.. |..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|++++ +|+.|||||
T Consensus 169 l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p---~~~~~PFrL 244 (350)
T cd00896 169 LRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDP---KPFPPPMKL 244 (350)
T ss_pred HHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCC---CCCCCCeec
Confidence 8888888877 47999999999999999999999999999999999 699999999999999985 488899999
Q ss_pred ChhHHh-hcccchhh----HHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh-hhhhhhh
Q 000149 1975 TQVRKS-YGLCAMHF----IVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS-LMEHIEH 2028 (2037)
Q Consensus 1975 T~nmvd-~G~~g~e~----~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~-~~~~~~~ 2028 (2037)
|++|++ +|..|.++ ...+..+|..+|+ .+..++++|- ++-+||++. +.+.|++
T Consensus 245 T~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~-~~~ip~~~~~~~~~i~~ 306 (350)
T cd00896 245 CKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMV-DANIPDIALDPDKAILK 306 (350)
T ss_pred cHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHc-CCCCcccccCHHHHHHH
Confidence 999999 77766654 6666788899999 7777888885 667999984 4455543
No 20
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5e-46 Score=446.25 Aligned_cols=238 Identities=20% Similarity=0.310 Sum_probs=208.4
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecCC-----CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccce
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG-----IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLY 1818 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdG-----k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~ 1818 (2037)
.+.+.+.++ .+++.||.|+++|.++++.+.|| ..|++|+|.+||||||+++||++++||++|+++ .++|+
T Consensus 60 ~P~~~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ldL~ 135 (365)
T cd00894 60 DPGLRAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLDLC 135 (365)
T ss_pred CCceEEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCCeE
Confidence 466788888 68899999999999999999887 579999999999999999999999999999876 37899
Q ss_pred eccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHH
Q 000149 1819 IRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898 (2037)
Q Consensus 1819 i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~ 1898 (2037)
+++|+|+|+++++|+||||+|+.|+++|.+......|. ++ ...+++|
T Consensus 136 l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~--------------------------~k-------~~~l~~~ 182 (365)
T cd00894 136 LLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGA--------------------------FK-------DEVLSHW 182 (365)
T ss_pred EEEEEEEEecCCceEEEEcCCchhHHHHHHhccccccc--------------------------cc-------chhHHHH
Confidence 99999999999999999999999999997642111110 11 1368899
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-C-CCCCCCcccCh
Q 000149 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRLTQ 1976 (2037)
Q Consensus 1899 f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~-~pE~VPFRLT~ 1976 (2037)
|.+.+|++..|..++.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|++++.+ . .||+||||||+
T Consensus 183 l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~ 261 (365)
T cd00894 183 LKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPFVLTP 261 (365)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCeeecH
Confidence 999999999999999999999999999999999999999999999 69999999999999998875 3 49999999999
Q ss_pred hHHh-hcccch-------hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1977 VRKS-YGLCAM-------HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1977 nmvd-~G~~g~-------e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+|++ +|..|. .|...+..+|.++|+ .++.++++|.. |-+||+..
T Consensus 262 e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~-sgip~l~~ 316 (365)
T cd00894 262 DFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLM-TGMPQLTS 316 (365)
T ss_pred HHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CCCcccCc
Confidence 9999 775542 367778899999999 77777888875 89999984
No 21
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.3e-45 Score=442.06 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=202.1
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.+.++ .++++|++|+++|+++++.|.| |+.|++|+|++||||||+++||++++||.+|+++. .+|++++
T Consensus 58 ~p~~~~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~----ldL~l~p 133 (361)
T cd05174 58 SPSIILCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTP 133 (361)
T ss_pred CCceEEEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 345666665 7899999999999999999976 99999999999999999999999999999999864 7899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++|+||||+|+.|+++|....... +. . + .+. .+.+.+||.+
T Consensus 134 Y~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~----------~-------~------~f~-------~~~l~~~l~~ 182 (361)
T cd05174 134 YGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA----------T-------A------AFN-------KDALLNWLKS 182 (361)
T ss_pred EEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch----------h-------c------ccc-------chHHHHHHHh
Confidence 99999999999999999999999997642100 00 0 0 010 1367899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC--CCCCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL--LEKPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~--l~~pE~VPFRLT~nmv 1979 (2037)
.+|+ +.|.+++.+|++|+|+||++||||||||||++||||+ .+|+++|||||++|++.++ ...||+||||||++|+
T Consensus 183 ~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e~v 260 (361)
T cd05174 183 KNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFV 260 (361)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHHHH
Confidence 8876 3577889999999999999999999999999999999 5999999999999998654 3469999999999999
Q ss_pred h-hcccc-------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCA-------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g-------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..| ..|...+..+|..+|+ .++.++++|. +|-+||++.
T Consensus 261 ~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~-~sgip~~~~ 312 (361)
T cd05174 261 HVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMK-AAGLPELNC 312 (361)
T ss_pred HHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCCCCccCc
Confidence 9 64321 1456777799999999 8888899996 699999985
No 22
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=5.5e-45 Score=434.76 Aligned_cols=237 Identities=22% Similarity=0.327 Sum_probs=205.4
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.+.++ .+.+.|++|+++|+++++.++| |+.|++|+|.+||||||+++||++++||++|+++. .+|++++
T Consensus 54 ~p~~~~~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~----ldL~l~p 129 (353)
T cd05176 54 SPSLVAKELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEG----LDLRMVI 129 (353)
T ss_pred CcceeEccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCeEEEE
Confidence 345667776 4678999999999999999999 99999999999999999999999999999998864 6799999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|...+ ...|.+ + ...+.+|+..
T Consensus 130 Y~vl~tg~~~GlIE~V~ns~tl~~I~~~~-~~~~~~--------------------------~-------~~~l~~~l~~ 175 (353)
T cd05176 130 FKCLSTGKDRGMVELVPASETLRKIQVEY-GVTGSF--------------------------K-------DKPLAEWLRK 175 (353)
T ss_pred EEEEEcCCCceEEEEeCCcHhHHHHHHHh-CcCCcc--------------------------c-------cchHHHHHHH
Confidence 99999999999999999999999997642 111110 0 0246789998
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv 254 (353)
T cd05176 176 YNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHH
Confidence 889999999999999999999999999999999999999998 799999999999999988653 59999999999999
Q ss_pred h-h-cccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-Y-GLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~-G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ + |..+ ..|..++..+|.++|| .++.++++|. +|-+||+..
T Consensus 255 ~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~-~s~iP~~~~ 305 (353)
T cd05176 255 YVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMT-QSGLPELTG 305 (353)
T ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCcccCC
Confidence 9 4 3332 2356777799999999 7888899996 699999984
No 23
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=2e-44 Score=433.63 Aligned_cols=241 Identities=20% Similarity=0.268 Sum_probs=201.8
Q ss_pred CCCCcEEeeec-cceEEecCCCceeEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceec
Q 000149 1744 ASDLPTISGIA-DEAEILSSLQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820 (2037)
Q Consensus 1744 ~~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gs--dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ 1820 (2037)
..+.+.|.++. ++++||+|+++|++|++.+. +|..|.+|+|++||||||+++||++++||++|+++ ..+|+++
T Consensus 57 ldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l~ 132 (362)
T cd05173 57 LNPSIILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEA----GLDLRIV 132 (362)
T ss_pred CCCceEEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeeeE
Confidence 35678899985 56999999999999999875 79999999999999999999999999999999986 3789999
Q ss_pred cceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHH
Q 000149 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900 (2037)
Q Consensus 1821 ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~ 1900 (2037)
+|+|+|+++++|+||||+|+.|+++|..+... .. . .+ .+. .+.+.+||.
T Consensus 133 pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~----~~---~-----------~~------~f~-------~~~l~~~l~ 181 (362)
T cd05173 133 PYGCLATGDRSGLIEVVSSAETIADIQLNSSN----VA---A-----------AA------AFN-------KDALLNWLK 181 (362)
T ss_pred EEEEEEccCCceEEEEeCCchhHHHHHHhccc----cc---h-----------hc------ccC-------hhHHHHHHH
Confidence 99999999999999999999999999754210 00 0 00 000 136788998
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC--CCCCCCCCcccChhH
Q 000149 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL--LEKPELVPFRLTQVR 1978 (2037)
Q Consensus 1901 ~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~--l~~pE~VPFRLT~nm 1978 (2037)
+.+++ ..|..++.+|++|+|+||++||||||||||++||||| .+|+++|||||++|++.++ ...||+||||||++|
T Consensus 182 ~~~~~-~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~em 259 (362)
T cd05173 182 EYNSG-DDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDF 259 (362)
T ss_pred hcCCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCeeecHHH
Confidence 86554 4678899999999999999999999999999999999 6999999999999997543 345999999999999
Q ss_pred Hh-h--cccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1979 KS-Y--GLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1979 vd-~--G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
++ + |..| -.|...+..+|..+|+ .|+.++++|.. +-+||+...
T Consensus 260 v~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~-s~ip~~~~~ 313 (362)
T cd05173 260 IHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLT-AGLPELTSV 313 (362)
T ss_pred HHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CCCccccch
Confidence 99 4 5444 2457778899999999 77778888876 779999853
No 24
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=6.1e-44 Score=422.92 Aligned_cols=229 Identities=21% Similarity=0.358 Sum_probs=200.8
Q ss_pred CCCcEEeee-ccceEEecCC-CceeEEEEEecCCC-------------eeeEEecCCCcchhhHHHHHHHHHHHHHHccC
Q 000149 1745 SDLPTISGI-ADEAEILSSL-QRPKKIVLLGSDGI-------------KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~-~~Prki~i~GsdGk-------------~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~ 1809 (2037)
.+...+.++ .++.+||.|+ .+|-++++...|+. .+++++|.+||||||+++||++++||++|++.
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i~~~~ 84 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNIFQSA 84 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 356778887 5778999997 57999999998764 49999999999999999999999999999976
Q ss_pred CcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcC
Q 000149 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2037)
Q Consensus 1810 ~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2037)
+++|++++|+|+|+++++|+||||+|+.|+++|.+..
T Consensus 85 ----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~--------------------------------------- 121 (311)
T cd05167 85 ----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTT--------------------------------------- 121 (311)
T ss_pred ----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhc---------------------------------------
Confidence 4789999999999999999999999999998874320
Q ss_pred CCchhHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CC
Q 000149 1890 MFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EK 1966 (2037)
Q Consensus 1890 ~~ppvl~~~f~~~f~~p--~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~ 1966 (2037)
+..+.+||.+.|++| ..|..+|.+|++|+|+||++|||||+||||++|||||. +|+++|||||++|+++|+- ..
T Consensus 122 --~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~ 198 (311)
T cd05167 122 --DNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLK 198 (311)
T ss_pred --ccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCC
Confidence 125778999998765 68999999999999999999999999999999999995 9999999999999998764 46
Q ss_pred CCCCCcccChhHHh-hcccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhh
Q 000149 1967 PELVPFRLTQVRKS-YGLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEY 2020 (2037)
Q Consensus 1967 pE~VPFRLT~nmvd-~G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~ 2020 (2037)
||+||||||++|++ +|..+ ..|...+..+|.++|+ .++.++++|- +|.+|||.
T Consensus 199 ~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~-~s~lp~~~ 260 (311)
T cd05167 199 FESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELML-DSGLPCFR 260 (311)
T ss_pred cCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH-cCCchhhh
Confidence 89999999999999 77665 2446667788889999 7888889885 89999998
No 25
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=1.1e-43 Score=404.12 Aligned_cols=192 Identities=32% Similarity=0.550 Sum_probs=178.8
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCcc
Q 000149 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2037)
Q Consensus 1780 ~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~ 1859 (2037)
.|++|++||+|||+|+||+++++|.+|++++|+++|++++++|.|+|+++++||||||+|+.|+++|
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------- 67 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------- 67 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------------
Confidence 4899999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 000149 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2037)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eN 1939 (2037)
+++||.+.||+|.+|+.+|++|++|+|+||++|||+|+|||||+|
T Consensus 68 -----------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~N 112 (202)
T smart00146 68 -----------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDN 112 (202)
T ss_pred -----------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 457999999999999999999999999999999999999999999
Q ss_pred eeEecCCCcEEEeecccccccCCCCCCC-CCCCcccChhHHh-hcccchhh--HHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1940 ILFDSTTGDCVHVDFSCLFDKGLLLEKP-ELVPFRLTQVRKS-YGLCAMHF--IVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1940 ILid~~tG~vvHIDF~~~f~~g~~l~~p-E~VPFRLT~nmvd-~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
|||+ +||+++|||||++|++++++..| |.||||||+||++ +|..|.+| ...+...+.++|+ .+..++++|..
T Consensus 113 Ili~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~ 191 (202)
T smart00146 113 IMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLY 191 (202)
T ss_pred EEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHcC
Confidence 9999 89999999999999999988776 9999999999999 89888876 5677788888888 77778888888
Q ss_pred CCccchhhh
Q 000149 2013 SSFYSCEYS 2021 (2037)
Q Consensus 2013 ~s~~~~~~~ 2021 (2037)
|. ++|+.+
T Consensus 192 d~-l~~~~~ 199 (202)
T smart00146 192 DG-LPDWRS 199 (202)
T ss_pred CC-ChhhcC
Confidence 87 588765
No 26
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=7.7e-44 Score=419.41 Aligned_cols=217 Identities=23% Similarity=0.387 Sum_probs=186.8
Q ss_pred eEEecCC-CceeEEEEEecCC--CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCcee
Q 000149 1757 AEILSSL-QRPKKIVLLGSDG--IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2037)
Q Consensus 1757 v~V~~S~-~~Prki~i~GsdG--k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GL 1833 (2037)
.++++|. ..|-.+.+.-.|| +.|+||+|++||||||+++||++++||++|+++ +++|+++||+|+|+++++|+
T Consensus 8 ~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 8 PKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred chHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCcee
Confidence 4555655 3466666655555 599999999999999999999999999999876 47899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCC--hhHHHH
Q 000149 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSE--PAAWFR 1911 (2037)
Q Consensus 1834 IEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~--p~~w~~ 1911 (2037)
||||+|+.|+++|.+++ .+.+++||.+.|++ +.+|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999997542 01356788888874 567999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-hcccchh--
Q 000149 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS-YGLCAMH-- 1987 (2037)
Q Consensus 1912 aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd-~G~~g~e-- 1987 (2037)
+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+++|+. ..||.||||||++|++ +|..|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999995 9999999999999999876 5689999999999999 7766544
Q ss_pred --hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhh
Q 000149 1988 --FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEY 2020 (2037)
Q Consensus 1988 --~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~ 2020 (2037)
|...+..+|.++|+ .+..++++|. +|-+|||.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~-~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLI-FSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHc-cCCCcccC
Confidence 56777788899999 7778888886 56889998
No 27
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=7.5e-43 Score=416.64 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=207.3
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+++.++ -++..|+.|+.+|.++++.+.| |..|.+++|.|||||||+.++|++++|+++|+++. .+|++++
T Consensus 55 dP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldl~l~p 130 (354)
T cd00895 55 SPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEG----LDMRMVI 130 (354)
T ss_pred CCCeEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcC----CCceEEE
Confidence 466789998 5788999999999999999998 89999999999999999999999999999999974 6799999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|.... ...|.+ + ...+.+||.+
T Consensus 131 Y~vl~tg~~~G~IE~V~ns~tl~~I~~~~-g~~g~~--------------------------~-------~~~l~~~l~~ 176 (354)
T cd00895 131 FRCFSTGRGRGMVEMIPNAETLRKIQVEH-GVTGSF--------------------------K-------DRPLADWLQK 176 (354)
T ss_pred EEEEecCCCceEEEEeCChhhHHHHHHHh-CcCccc--------------------------c-------cchHHHHHHH
Confidence 99999999999999999999999997642 111110 0 0247889999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++.+. .+|++||+||++|+
T Consensus 177 ~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~emv 255 (354)
T cd00895 177 HNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMA 255 (354)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 799999999999999887543 59999999999999
Q ss_pred h-hccc---c---hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLC---A---MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~---g---~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|.. + ..|...+..+|.++|| .++.++++|. +|-+||+..
T Consensus 256 ~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~-~sgiP~l~~ 306 (354)
T cd00895 256 YVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLML-SCGIPELSD 306 (354)
T ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-cCCCcccCc
Confidence 9 5321 2 2456777799999999 7888899998 588999975
No 28
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.7e-42 Score=413.71 Aligned_cols=238 Identities=21% Similarity=0.314 Sum_probs=201.7
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecCC------CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG------IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdG------k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L 1817 (2037)
.+.+.+.++ .++..|++|+.+|.++++.+.|| ..|.+++|.+||||||++++|++++||++|+++. .+|
T Consensus 58 ~P~~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldL 133 (366)
T cd05175 58 NPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDL 133 (366)
T ss_pred CCceEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCe
Confidence 456788888 46889999999999999999998 4699999999999999999999999999999864 789
Q ss_pred eeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHH
Q 000149 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2037)
Q Consensus 1818 ~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~ 1897 (2037)
++++|.|+|+++++|+||||+|+.|+++|..+. |.. +.. .-..+.+++
T Consensus 134 ~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~-----------~~~~~~l~~ 181 (366)
T cd05175 134 RMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLK-----------------GAL-----------QFNSHTLHQ 181 (366)
T ss_pred EEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----ccc-----------------ccc-----------ccCchhHHH
Confidence 999999999999999999999999999996531 100 000 001246888
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-C-CCCCCCCcccC
Q 000149 1898 WFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFRLT 1975 (2037)
Q Consensus 1898 ~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l-~~pE~VPFRLT 1975 (2037)
|+.+.+++ ..|.++|.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|+.+|+ + ..||+||||||
T Consensus 182 ~l~~~~~~-~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFkLT 259 (366)
T cd05175 182 WLKDKNKG-EMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLT 259 (366)
T ss_pred HHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCeEec
Confidence 99887764 4699999999999999999999999999999999999 5999999999999998875 3 35999999999
Q ss_pred hhHHh-hccc------ch---hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1976 QVRKS-YGLC------AM---HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1976 ~nmvd-~G~~------g~---e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
++|++ +|.. +. .|..++..+|.++|| .++.++++|. +|-+||+..
T Consensus 260 ~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~-~sgiP~l~~ 317 (366)
T cd05175 260 QDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMML-GSGMPELQS 317 (366)
T ss_pred HHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccCC
Confidence 99998 4321 22 456677799999999 7777888886 699999985
No 29
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=2e-41 Score=417.58 Aligned_cols=341 Identities=32% Similarity=0.506 Sum_probs=280.2
Q ss_pred hHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchh
Q 000149 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2037)
Q Consensus 1186 ~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~e 1265 (2037)
+++++|||||+|+||.+++++...+.+ +++..+++++.++++++.+++...|+.+|..++..+++.+.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 378999999999999999998876542 347889999999999999999999999999999999999999
Q ss_pred hHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCC
Q 000149 1266 SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG 1345 (2037)
Q Consensus 1266 Sy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~ 1345 (2037)
||+++||.+++||+|+||||++++..+.. ......+.+.+.|+.|++.++++++.|++||++|+++|+.....
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~-------~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~ 142 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS-------QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLP 142 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999884321 12567889999999999999999999999999999999977777
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC------CChHHHHHHHHHHHcCCchHHHHHHHHHhhc-CCcccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG------APNVHMEKAKLLWSTRRSDGAIAELQQNLLN-KPVEVVGS 1418 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~------~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~-~~~~~~g~ 1418 (2037)
.+++.+|+++|++|||+|++++|.+++.++...+ .|.+.+|+||++|++|++.+|++.|+..+++ +.... +.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~-~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI-DS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-cc
Confidence 8999999999999999999999999999999876 8999999999999999999999999999883 22111 10
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----GQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s----~~~~~~~i~~~Y~~A~~l~~~weK~~~~la 1494 (2037)
......... ... ........+........+|++++++|+|.+.. +....+++.+.|++|++++|+|+|+||+||
T Consensus 222 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSG-LLE-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhc-ccc-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 000000000 000 00000001112335568899999999999999 888899999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHH
Q 000149 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLT 1552 (2037)
Q Consensus 1495 ~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLt 1552 (2037)
+|+|+++......+... ......+|+..||.||++|+.+|++++++++|||||
T Consensus 300 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 300 LFNDKLLESDPREKEES-----SQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHhhhhccccc-----chhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 99999985433211110 002345799999999999999999999999999986
No 30
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=1.1e-39 Score=381.24 Aligned_cols=221 Identities=33% Similarity=0.627 Sum_probs=159.1
Q ss_pred eeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCC
Q 000149 1778 KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKF 1857 (2037)
Q Consensus 1778 ~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~ 1857 (2037)
.|+||+|++||+|||+|+||+++++|.+|.++.++++ +++|.|+|+++++||||||+++.|+++|+.+++.+.+..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~ 76 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS 76 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc
Confidence 4999999999999999999999999999999987755 999999999999999999999999999999876654433
Q ss_pred ccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000149 1858 DRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2037)
Q Consensus 1858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~ 1937 (2037)
... +. .+.... ..........++.+.+||...+++++.|+.+|++|++|+|++|++|||+|+|||||
T Consensus 77 ~~~---~~-~~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~ 143 (235)
T PF00454_consen 77 NDN---PS-RKYKAK---------LFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHP 143 (235)
T ss_dssp CSC-------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--T
T ss_pred ccc---cc-cccccc---------cccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCc
Confidence 211 00 000000 01112223345699999999999999999999999999999999999999999999
Q ss_pred CceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-h----cccchhh--HHHHHhhHHHhhh---hhhHhh
Q 000149 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y----GLCAMHF--IVILSPLFFPLKK---ILIYVC 2007 (2037)
Q Consensus 1938 eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~----G~~g~e~--~~~~~~~f~~~~k---~~~~~~ 2007 (2037)
+|||++..||+++|||||++|+ ++.++.||.||||||+||++ + |+.|.+| ...+...+.++|+ .+..+.
T Consensus 144 ~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll 222 (235)
T PF00454_consen 144 GNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLL 222 (235)
T ss_dssp TTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999988999999999999999 88888999999999999999 7 8888887 2334455566666 666666
Q ss_pred cccCCCCcc
Q 000149 2008 LVPQPSSFY 2016 (2037)
Q Consensus 2008 ~l~~~~s~~ 2016 (2037)
+++-.|...
T Consensus 223 ~~~~~d~l~ 231 (235)
T PF00454_consen 223 ELFLRDPLI 231 (235)
T ss_dssp HHTTTSCST
T ss_pred HHHHhCCCC
Confidence 666655443
No 31
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=362.17 Aligned_cols=214 Identities=22% Similarity=0.354 Sum_probs=190.7
Q ss_pred CCceeEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1763 LQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1763 ~~~Prki~i~Gs--dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
+.|.|+-+.+|+ ++...+++||.|||||||..+.|++..+.++|.+.. -.||+|+|+|+.++.++||||.|+|+
T Consensus 570 k~RIRktS~Yg~~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da 645 (847)
T KOG0903|consen 570 KARIRKTSPYGHLPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDA 645 (847)
T ss_pred HHHHhccCccccCCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccch
Confidence 678889999997 678999999999999999999999999999999885 57999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCCh--hHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP--AAWFRARVAYAH 1918 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p--~~w~~aR~~Ft~ 1918 (2037)
.|+|+|.+.+-+ . ..|. +|...|.+| ..|..|++||..
T Consensus 646 ~SIHsIKk~l~~----------~-----------------------------~~l~-~F~~~~g~~NS~~yk~AQrNFvq 685 (847)
T KOG0903|consen 646 MSIHSIKKRLPN----------L-----------------------------ASLR-HFFAAFGKPNSEKYKSAQRNFVQ 685 (847)
T ss_pred hhHHHHHHhcch----------h-----------------------------hhHH-HHHHHhCCCCcHHHHHHHHHHHH
Confidence 999999876400 0 0122 445555544 569999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-h-cccch---hhHHHHH
Q 000149 1919 TTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y-GLCAM---HFIVILS 1993 (2037)
Q Consensus 1919 SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~-G~~g~---e~~~~~~ 1993 (2037)
|+|+||+|||+|+++|||++||||| ..|||+||||||++++.|+...+|..||+||.++++ | |+.|. +|..++.
T Consensus 686 SlagYSLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmgG~~~d~FdyfK~L~l 764 (847)
T KOG0903|consen 686 SLAGYSLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMGGLDSDMFDYFKSLML 764 (847)
T ss_pred HHHHHHHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999 799999999999999999999999999999999999 4 56664 4478888
Q ss_pred hhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1994 PLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1994 ~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
.+|+++|| .|+.+||+||..|.+|||++
T Consensus 765 ~gf~a~RKhadrIv~lvEiMq~~S~~pCF~a 795 (847)
T KOG0903|consen 765 QGFMALRKHADRIVLLVEIMQDGSGMPCFRA 795 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 99999999 88999999999999999996
No 32
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-30 Score=311.53 Aligned_cols=399 Identities=21% Similarity=0.275 Sum_probs=261.8
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.|++-|++|+.+....-..-..+++-=|=.....-..+..++ .-.+..|.......+.....-..+..++||+..+
T Consensus 309 KALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss----~f~~~sVrayavsrl~~a~deelllYL~qlvqal 384 (843)
T KOG0906|consen 309 KALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSS----YFTHPSVRAYAVSRLKGADDEELLLYLLQLVQAL 384 (843)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccc----cccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 589999999998876533334566666733221000000000 0012233344444455566667778888888877
Q ss_pred cCCC----hH-----------------------------------------HHHHHHHHHHHHHHhcchhH--HHHHHHh
Q 000149 1607 CHQN----EE-----------------------------------------IVRLVKHIITSVLRQYPQQG--LWIMAAV 1639 (2037)
Q Consensus 1607 ~h~~----~~-----------------------------------------v~~~l~~Ii~~v~~~yPqq~--lw~l~~~ 1639 (2037)
+..+ ++ ...+..-++.+...++--.. +|++.+.
T Consensus 385 ~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e 464 (843)
T KOG0906|consen 385 KYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVE 464 (843)
T ss_pred HHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEE
Confidence 7655 11 01345666666666543333 4555444
Q ss_pred hcCCcHHHHHHHHHHHHHHHh---cCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccCCccc
Q 000149 1640 SKSTIPSRREAAAEIIQAAKK---GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIM 1716 (2037)
Q Consensus 1640 ~kS~~~~R~~~a~~Il~~~k~---~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~ 1716 (2037)
..++. -.++...|+..... ..+.+......+.+-..|+++|.+++........++..-. ..++.+.....-+
T Consensus 465 ~Ed~~--~~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~---e~L~~lL~~~~~~ 539 (843)
T KOG0906|consen 465 IEDTP--YSKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKI---ERLRGLLGDHKHM 539 (843)
T ss_pred ecCCh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHH---HHHHHHHhccccc
Confidence 44332 22234444433322 2222222334566667899999998854322111111101 1122221111111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccCCCCcEEeee-ccceEEecCCCceeEEEEEecCCC-eeeEEecCCCcchhhHH
Q 000149 1717 PIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDGI-KRPFLCKPKDDLRKDSR 1794 (2037)
Q Consensus 1717 piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdGk-~y~fLvK~~dDlRqD~r 1794 (2037)
++-..--+ ..|+ .+.++|.++ .++.+++.|.-.|-++++...+|. .|+.++|.|||||||+.
T Consensus 540 ~l~~~~~i--------------~lpl--dp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDql 603 (843)
T KOG0906|consen 540 NLLDVRLI--------------ALPL--DPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQL 603 (843)
T ss_pred ccccceee--------------ccCC--CCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHH
Confidence 11110111 1222 466899997 678899999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHh
Q 000149 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ 1874 (2037)
Q Consensus 1795 ~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 1874 (2037)
+.|++++|+++|++.+ -+|.+++|+|+|+++.-|++|+|++- ++..|+..+.. +
T Consensus 604 V~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s~-~la~Ils~~~~-------------I-------- 657 (843)
T KOG0906|consen 604 VLQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPSK-PLARILSEYHS-------------I-------- 657 (843)
T ss_pred HHHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecCC-cHHHHHHHHHH-------------H--------
Confidence 9999999999999986 67999999999999999999999874 89888876422 0
Q ss_pred cCCChhHHHHHhhcCCCchhHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEE
Q 000149 1875 GKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP----AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCV 1950 (2037)
Q Consensus 1875 ~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p----~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vv 1950 (2037)
..|+.+..|+- .-=...+++|.+|||.||+++||||+||||++|+|+. .+|+.+
T Consensus 658 ---------------------~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~F 715 (843)
T KOG0906|consen 658 ---------------------LMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLF 715 (843)
T ss_pred ---------------------HHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEE
Confidence 11222222221 1125678999999999999999999999999999998 699999
Q ss_pred EeecccccccCCCCCCCCCCCcccChhHHh-h-cccc---hhhHHHHHhhHHHhhh
Q 000149 1951 HVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y-GLCA---MHFIVILSPLFFPLKK 2001 (2037)
Q Consensus 1951 HIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~-G~~g---~e~~~~~~~~f~~~~k 2001 (2037)
|||||++|+.. ++|-..|.+|++.||+ | |... .+|.+....+|..+|+
T Consensus 716 HiDFgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRR 768 (843)
T KOG0906|consen 716 HIDFGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRR 768 (843)
T ss_pred EEeeeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 4677889999999999 4 4444 3556667788899998
No 33
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=99.97 E-value=5e-30 Score=322.25 Aligned_cols=364 Identities=20% Similarity=0.325 Sum_probs=254.8
Q ss_pred HHHHHHhhcCCCCchhhHhhHHHHHhhccCC----ChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcC-CcHHHHHHHHH
Q 000149 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQ----NEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKS-TIPSRREAAAE 1653 (2037)
Q Consensus 1579 i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~----~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS-~~~~R~~~a~~ 1653 (2037)
|.+.--.-+.+++....+..+||+|..+.+. .+-|+-+|..-+..+ .+-+..||.+.-..+. ....| .+.
T Consensus 906 VR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl--~~ah~lYWlLk~~l~d~qfs~r---Yq~ 980 (1639)
T KOG0905|consen 906 VRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSL--QFAHELYWLLKDALDDSQFSLR---YQN 980 (1639)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcch--HHHHHHHHHHhhccccceeehH---HHH
Confidence 3333445678899999999999999999874 322333333333322 3446778988755442 33333 355
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHhcc--CCccccccchhhhhHHHHhhccCCcccccccccccccCCCCC
Q 000149 1654 IIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHA--GQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDA 1731 (2037)
Q Consensus 1654 Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~--~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~ 1731 (2037)
++.++..... .+...-+..-.+|+.+|-.++..- ....+|...+......++.. ++++-+..||-.
T Consensus 981 ll~aLl~~~g--k~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f--------f~~n~tcrLPL~-- 1048 (1639)
T KOG0905|consen 981 LLAALLDCCG--KNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF--------FLQNNTCRLPLC-- 1048 (1639)
T ss_pred HHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH--------HHhCCceecccC--
Confidence 5555543321 111222333356667776666431 11122222233333332221 111223334421
Q ss_pred CCCCCCCCCCccCCCCcEEeee-ccceEEecCCCceeEEEEEe--cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHcc
Q 000149 1732 NLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLG--SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808 (2037)
Q Consensus 1732 ~~~~~~~~~pfp~~~~v~I~~f-~~~v~V~~S~~~Prki~i~G--sdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k 1808 (2037)
+...+.++ -++..+++|...|-||+|+| -+|+.++.+.|.+||||||+.++|++++|++||.+
T Consensus 1049 --------------Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~ 1114 (1639)
T KOG0905|consen 1049 --------------PALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQ 1114 (1639)
T ss_pred --------------chheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 11223333 24667889999999999999 77999999999999999999999999999999999
Q ss_pred CCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhc
Q 000149 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL 1888 (2037)
Q Consensus 1809 ~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1888 (2037)
+. -+|.+-+|+++|++-+-|++|-|+|+.||+.|-.+ +.-.|.+. +
T Consensus 1115 eg----LDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve-~GltGsfk--------------------------D--- 1160 (1639)
T KOG0905|consen 1115 EG----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVE-EGLTGSFK--------------------------D--- 1160 (1639)
T ss_pred cC----CceeEEEEEeecccccccceeecccHHHHHHHHHH-hccccccc--------------------------c---
Confidence 85 67999999999999999999999999999999654 22222221 1
Q ss_pred CCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--C
Q 000149 1889 PMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--K 1966 (2037)
Q Consensus 1889 ~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~ 1966 (2037)
..+.+|+.+..|++.+|-.|..||+.|+|.||+++||||++|||++|||+. +||+++|||||-.++....|. +
T Consensus 1161 ----~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQMfg~fK 1235 (1639)
T KOG0905|consen 1161 ----RPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFK 1235 (1639)
T ss_pred ----chHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHHHhcccc
Confidence 157889999999999999999999999999999999999999999999997 799999999999888876664 4
Q ss_pred CCCCCcccChhHHh---hc-ccchh---hHHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1967 PELVPFRLTQVRKS---YG-LCAMH---FIVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1967 pE~VPFRLT~nmvd---~G-~~g~e---~~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
..++||-+|-+|.- .| -.... |..+.-.+|.-+|| .+..++.+|-.
T Consensus 1236 RDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~ 1291 (1639)
T KOG0905|consen 1236 RDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMAC 1291 (1639)
T ss_pred cccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 78999999999976 23 22233 34555578888998 55555555644
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.97 E-value=2e-29 Score=322.96 Aligned_cols=367 Identities=17% Similarity=0.296 Sum_probs=235.9
Q ss_pred HHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHH---HHHHhcchhHHHHHHHhhcCCcHHH-HHHHHHHHH
Q 000149 1581 SIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIIT---SVLRQYPQQGLWIMAAVSKSTIPSR-REAAAEIIQ 1656 (2037)
Q Consensus 1581 ~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~---~v~~~yPqq~lw~l~~~~kS~~~~R-~~~a~~Il~ 1656 (2037)
..--..+...|+..-+..+||||..+....-. .+...|. .-..-+-||.+|.|.+-.--+...- .....+|+.
T Consensus 1354 ~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~---~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~ 1430 (1803)
T KOG0902|consen 1354 QYAVRVLRSYSPNEMLFYVPQIVQALRYDKMG---YVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILD 1430 (1803)
T ss_pred HHHHHHHHhCChhhhhhhhHHHHHHHhhcchh---HHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHH
Confidence 33334567789999999999999999886633 2233322 2335678999999986432111111 123344444
Q ss_pred HHH----hcCCCCCchhhHHHHHHHHHHHHHHHHhc--cCCc-cccccchhhhhHHHHhhccCCccccccccc-ccccCC
Q 000149 1657 AAK----KGSAHGNSANNLFGQFTSLIDHLIKLCFH--AGQS-KSRTINISTEFSALKRMMPLGIIMPIQQSL-TVTLPP 1728 (2037)
Q Consensus 1657 ~~k----~~~~~~~~~~~li~~~~~l~~~Li~l~~~--~~~~-~~~~~~ls~~f~~l~~~~~~~li~piq~~l-~~~LP~ 1728 (2037)
+++ ...+. ....++..--.+++++..+... |-.. ..++-.+.++.+.+ ++.| ++++|-.-.. .+.+--
T Consensus 1431 ~~~e~i~~~~s~--~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~ki-k~~~-~~YlPs~P~~~v~~i~~ 1506 (1803)
T KOG0902|consen 1431 RVREEITGSLSG--PARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKI-KVQP-GCYLPSNPDAVVLDIDY 1506 (1803)
T ss_pred HHHHHHHhcCCc--hhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhh-cccC-ceecCCCCCceEEEeec
Confidence 443 33322 2224444444566666555421 1000 11111122222211 1222 3333321110 000000
Q ss_pred CCCCCCCCCCCCCcc-CCCCcEEeeeccceEEecCCCceeEEEEEecCCCe-------eeEEecCCCcchhhHHHHHHHH
Q 000149 1729 QDANLTESPSSDIFS-ASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK-------RPFLCKPKDDLRKDSRMMEFTA 1800 (2037)
Q Consensus 1729 ~~~~~~~~~~~~pfp-~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~-------y~fLvK~~dDlRqD~r~~Ql~~ 1800 (2037)
++-.|.- ....|....|. | ||+.--|-.++. ..-++|-|||+|||....|++.
T Consensus 1507 --------~Sg~plQS~aK~PfmatF~----v-------kr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiis 1567 (1803)
T KOG0902|consen 1507 --------KSGTPLQSAAKAPFMATFK----V-------KRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIIS 1567 (1803)
T ss_pred --------CCCccchhhccCCeeEEEe----e-------eeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHH
Confidence 0111110 12233444431 1 111111111111 1357899999999999999999
Q ss_pred HHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChh
Q 000149 1801 MINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED 1880 (2037)
Q Consensus 1801 liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1880 (2037)
++..+|+.-. -++++-+|+|+|++|.||+||.|||+.|-.++-+. .
T Consensus 1568 lf~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~--------t---------------------- 1613 (1803)
T KOG0902|consen 1568 LFKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRE--------T---------------------- 1613 (1803)
T ss_pred HHHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhccc--------c----------------------
Confidence 9999998764 67999999999999999999999999886554221 0
Q ss_pred HHHHHhhcCCCchhHHHHHHHhCCChh--HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1881 EMLKTKILPMFPPVFHKWFLTTFSEPA--AWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1881 ~~~~~~i~~~~ppvl~~~f~~~f~~p~--~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
..-|++||...|++-+ .|.+||.||.+|+|+||+++|.|+++|||++||||| .-|+++||||||+|
T Consensus 1614 -----------~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~ 1681 (1803)
T KOG0902|consen 1614 -----------DNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMF 1681 (1803)
T ss_pred -----------cccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCCCEEEEeeeeEE
Confidence 0137789999998754 599999999999999999999999999999999999 79999999999999
Q ss_pred ccCCCC-CCCCCCCcccChhHHh-hc-c----cchhhHHHHHhhHHHhhhhhhHhhcc--cCCCCccchhh
Q 000149 1959 DKGLLL-EKPELVPFRLTQVRKS-YG-L----CAMHFIVILSPLFFPLKKILIYVCLV--PQPSSFYSCEY 2020 (2037)
Q Consensus 1959 ~~g~~l-~~pE~VPFRLT~nmvd-~G-~----~g~e~~~~~~~~f~~~~k~~~~~~~l--~~~~s~~~~~~ 2020 (2037)
+..|+- -..|. ||+||.+|+. +| . ...-|.+++..+|.|.|.+...+|.+ |-.||-+|||.
T Consensus 1682 e~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1682 ESSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred ecCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 999987 56888 9999999999 55 2 12345788889999999977776666 33679999995
No 35
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-27 Score=295.05 Aligned_cols=360 Identities=20% Similarity=0.279 Sum_probs=244.8
Q ss_pred HHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcc--hhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000149 1581 SIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYP--QQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2037)
Q Consensus 1581 ~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yP--qq~lw~l~~~~kS~~~~R~~~a~~Il~~~ 1658 (2037)
++--+++..+....++-.+=|||.-+.+..---..+.+-++.|...++- |..+|++++.+... .-..|-.-|++..
T Consensus 629 ~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~--~~~~RfgllLEaY 706 (1076)
T KOG0904|consen 629 AFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQP--SVQQRFGLLLEAY 706 (1076)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccH--HHHHHHHHHHHHH
Confidence 3334456788899999999999999998654445677777777777664 77899998765432 3344455577765
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCC
Q 000149 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPS 1738 (2037)
Q Consensus 1659 k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~ 1738 (2037)
-..+. .....+-.|. ...++|.++.-.-.. .+.+...+..-..++..+...-....-+.+ .-|
T Consensus 707 lRGc~--~hlk~l~kQv-e~l~kLk~lt~~iK~-~~~K~~~~~~~~~l~~~lr~~~~~~~lq~l--~sP----------- 769 (1076)
T KOG0904|consen 707 LRGCT--HHLKVLTKQV-EALEKLKKLTDLIKL-SAEKEDVSQVKEQLKLCLRQLANSEALQNL--QSP----------- 769 (1076)
T ss_pred HhccH--HHHHHHHHHH-HHHHHHHHHHHHHhh-cCccccHHHHHHHHHHHHHhHHHHHHHHhc--cCC-----------
Confidence 54431 1111222222 233444444321110 000111111111122111110000000000 001
Q ss_pred CCCccCCCCcEEee-eccceEEecCCCceeEEEEEe----cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCccc
Q 000149 1739 SDIFSASDLPTISG-IADEAEILSSLQRPKKIVLLG----SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESR 1813 (2037)
Q Consensus 1739 ~~pfp~~~~v~I~~-f~~~v~V~~S~~~Prki~i~G----sdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etr 1813 (2037)
. .+...... .-++.+||.|+.||-.+.+-. +++ ....++|+|||||||....|++++|..+|+.+.
T Consensus 770 L-----dP~~~lgel~iekckvM~SkkrPLwl~~~Np~~~s~~-~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~g--- 840 (1076)
T KOG0904|consen 770 L-----DPSLKLGELIIEKCKVMDSKKRPLWLVFENPDAGSNL-SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEG--- 840 (1076)
T ss_pred C-----ChhhhhcchhhhhhhhhhccCCceEEEecCCCcccCC-ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcC---
Confidence 0 11122222 246889999999999999843 334 678999999999999999999999999999886
Q ss_pred CccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCch
Q 000149 1814 RRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPP 1893 (2037)
Q Consensus 1814 rR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pp 1893 (2037)
-+|.+.+|.++|++...||||.|.|+.|+.+|-.+ .|.. .....|+ +.
T Consensus 841 -lDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~----~g~~--------------------~at~afn-------~~ 888 (1076)
T KOG0904|consen 841 -LDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLN----TGNM--------------------AATAAFN-------KD 888 (1076)
T ss_pred -CCeeccccccccccceeeeEEEecCchhhhhhhhc----cccc--------------------eeeccCC-------HH
Confidence 67999999999999999999999999999888432 1111 0000111 24
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCC
Q 000149 1894 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVP 1971 (2037)
Q Consensus 1894 vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VP 1971 (2037)
.|.+|+.+..|....+-+|-..||.|+|+||+++||||+||||.+|||+. .||.++|||||-+++.+++ |. ..|+||
T Consensus 889 ~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh~KsKlGi~RERvP 967 (1076)
T KOG0904|consen 889 ALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGHFKSKLGINRERVP 967 (1076)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhccchhhcCcccccCc
Confidence 79999999888877799999999999999999999999999999999998 6999999999999999876 33 499999
Q ss_pred cccChhHHh-h--cc--cch----hhHHHHHhhHHHhhh
Q 000149 1972 FRLTQVRKS-Y--GL--CAM----HFIVILSPLFFPLKK 2001 (2037)
Q Consensus 1972 FRLT~nmvd-~--G~--~g~----e~~~~~~~~f~~~~k 2001 (2037)
|=||++++. + |. ++. .|..+...++.++|+
T Consensus 968 FvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~ 1006 (1076)
T KOG0904|consen 968 FVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRR 1006 (1076)
T ss_pred eEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999998 3 22 222 235667788889998
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.91 E-value=6e-24 Score=257.54 Aligned_cols=159 Identities=23% Similarity=0.395 Sum_probs=133.6
Q ss_pred ceeEEEEEecCCCe-----------eeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCcee
Q 000149 1765 RPKKIVLLGSDGIK-----------RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2037)
Q Consensus 1765 ~Prki~i~GsdGk~-----------y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GL 1833 (2037)
+|.-+.+..-+|.. |.||+|. +|||||+.++|++++|+++|+++. .+|.+.+|+|++++.+.|+
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~-gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~dsGL 1101 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR-ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDSGL 1101 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec-CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCccc
Confidence 67777888888887 9999995 699999999999999999999986 6899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHH
Q 000149 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913 (2037)
Q Consensus 1834 IEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR 1913 (2037)
||.|++. ++.+|.+. .+.+||.. .++ ...
T Consensus 1102 IEfVps~-tLAsI~~~--------------------------------------------~Il~YLr~--~~t----~~~ 1130 (1374)
T PTZ00303 1102 IEKAEGR-ELSNLDNM--------------------------------------------DIASYVLY--RGT----RSC 1130 (1374)
T ss_pred EEEecch-HHHHhhhh--------------------------------------------HHHHHHHh--cCc----HHH
Confidence 9999875 56655321 02234432 222 235
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh
Q 000149 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS 1980 (2037)
Q Consensus 1914 ~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd 1980 (2037)
.||++|+|.||+++||||+||||++||||| .+|+++|||||++|+...--+++-.-|-|+-..|..
T Consensus 1131 ~NFi~S~AGYsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~e 1196 (1374)
T PTZ00303 1131 INFLASAKLFLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLA 1196 (1374)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCchhhhccCCCceehhHHHHH
Confidence 799999999999999999999999999999 699999999999999775446677788999999877
No 37
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=99.91 E-value=1.4e-24 Score=219.80 Aligned_cols=103 Identities=28% Similarity=0.575 Sum_probs=98.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhcCCC---ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHH
Q 000149 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2037)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~~~---~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~ 564 (2037)
+++||++|||||++.|++.+.+.. +..+|+++|+||++||+++|+||++++||||||||+||+.|+|++.|++||++
T Consensus 1 ~~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 479999999999999999998875 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
||++|++ ++++++++++|++++|+|+
T Consensus 81 ~i~~L~~---~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 81 LIKTLKE---EELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHhCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999976 7999999999999999997
No 38
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=99.88 E-value=4.2e-23 Score=211.09 Aligned_cols=103 Identities=30% Similarity=0.541 Sum_probs=98.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhcC---CCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHH
Q 000149 488 LPGFLRNHFVGLLNSIDRKMLH---AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2037)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~---~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~ 564 (2037)
+++||++|||||+++|++++.+ +.+..+|+++|+||++||+++|+||++++||||||||+|++.++|++.|++||++
T Consensus 1 ~~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 1 IADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 4799999999999999999987 5678999999999999999989999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
||++|++ ++|+|++++|+++++|+|+
T Consensus 81 fi~~L~~---~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDE---EDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999965 8999999999999999997
No 39
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.69 E-value=3.7e-06 Score=123.68 Aligned_cols=562 Identities=13% Similarity=0.070 Sum_probs=315.5
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc-CChhH
Q 000149 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQD 1119 (2037)
Q Consensus 1041 Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~-~~l~~ 1119 (2037)
+|...+....-.|..++.++++.|.++-... ....++.+..+..++.+.|..-|+...... ...+-
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l 1085 (2105)
T COG5032 1019 LPSLSIGFYESLCSFLAKLLHDEELYFFPLL-------------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQL 1085 (2105)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHhcccc-------------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhh
Confidence 5665565888899999999999999875421 135678888999999999988885332221 11222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh--hhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV--DGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~--~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
+..++.+.++|.+++.-|...............+.++|....+.|+.....+ ++.....+. ..-..+...-|+|-.|
T Consensus 1086 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~-r~~~~~~~~~~~~~~~ 1164 (2105)
T COG5032 1086 KPHLVKYLQRWYEALNRYFELLSKGDRLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRR-RKLLETLVATAYEQVG 1164 (2105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcc-hhhhhHHHHHHHHHHH
Confidence 2678899999999999999877764345556678999999999998754433 343333332 1223455677999999
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHH-HHHHHHHhhhhhhh-chhhHHhhhHHHH
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI-GVSKQVLIAPLAAA-GMDSYTRAYPFIV 1275 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I-~~aR~~l~~~L~a~-~~eSy~r~y~~l~ 1275 (2037)
.|+...++.+.+... ..+..|...+ .+.....++........ ..++..+..++... ..+++.+++-...
T Consensus 1165 ~~~~~q~~~e~~~~k-------~~~~~~~~s~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~ 1235 (2105)
T COG5032 1165 EWYKAQQLYEVAQRK-------ARSKEFPFSL--QYLYWHINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNI 1235 (2105)
T ss_pred hHHHHHHHHHHHhhh-------cccccCchhh--HHHHHcccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhH
Confidence 999998887765431 1122232221 33444556665555544 34566677777777 4569999998889
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHH--HHHHHHHHHHHhhh---ccCChhhhhhhHHHHHhhcCCCCCCchhHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLK--FSKLMANWENRLKY---TQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~--~~~l~~~W~~RL~~---~~~~~~~~e~lLslRr~v~~~~~l~~~~~~ 1350 (2037)
+.+...|+++++....... .....- .....+.|+.++.. +...+..|......+-.+..+. +...
T Consensus 1236 ~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~ 1305 (2105)
T COG5032 1236 KDSLESELEEIIDGMYKSN------EDFGALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPK----DEPE 1305 (2105)
T ss_pred HhhhhhhhhHHhhhhhhcc------cchHHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHh----hhhh
Confidence 9999999999887442110 011111 34556789999988 7766666654444443333333 2337
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHh--------------hcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000149 1351 CWLQYAKLCRLAG-HYETATRAILEAQ--------------ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2037)
Q Consensus 1351 ~WL~~AklARKag-~~~~A~~aLl~a~--------------~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2037)
.|.++++.|++.+ +.......+.... ..++|......-+..|+......+..........+...
T Consensus 1306 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1384 (2105)
T COG5032 1306 LFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSL- 1384 (2105)
T ss_pred HHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHHHhhhhhhchhhccccchh-
Confidence 8999999999999 3333333333321 11223344444455555554443333322221111000
Q ss_pred ccccccccccccCCCCCCCCCccccccc-chhhhhHHHHHHHH-HHHH---HHhC-CCCHHHHHHHHHHHHHhccchHHH
Q 000149 1416 VGSTAISSITSLSLVPLNPLPVLSNTQT-LNEKRDIAKTLLLY-SRWI---HYTG-QKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1416 ~g~~~~~~~~~l~~~~~~~~~~~~~~q~-~~~~~~~Ak~~Ll~-akwl---~~s~-~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
.+....+.. .+..+... ..... ...-...|+.+... +.|. .-.. ..+.......|..+..+...|.++
T Consensus 1385 ~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1458 (2105)
T COG5032 1385 LNLQSSSLS-----KQLVSRGS-SESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKA 1458 (2105)
T ss_pred hhccchhcc-----ccccccch-hhhhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHH
Confidence 000000000 00000000 00000 00000112222111 2222 1111 123445556677777777788888
Q ss_pred HHH-HHhhhHHHHHHHHhhhhhccc-CCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCC
Q 000149 1490 YFY-MAKYCDDVLVDARKRQEENSE-IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSS 1567 (2037)
Q Consensus 1490 ~~~-la~y~d~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~ 1567 (2037)
++. |+.-....+.+-.. .... -+... ........+.....+....+.-..+..+|.+.+|...|...
T Consensus 1459 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~------ 1527 (2105)
T COG5032 1459 GLNVWNLTNLELFSDIQE---SEFFEWGKNL--KLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLL------ 1527 (2105)
T ss_pred HHHhhcccchhHHHHHHH---HHHHHhhhhh--HHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhh------
Confidence 887 65444443321110 0000 00000 00111122333333333444445578899999998877521
Q ss_pred ChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHH
Q 000149 1568 SNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSR 1647 (2037)
Q Consensus 1568 ~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R 1647 (2037)
..++......+.+.. ...|+..+||+..++..........+..++.++++.|||+..+++.+..++....+
T Consensus 1528 ---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~ 1598 (2105)
T COG5032 1528 ---SAKDAAGSYYKNFHI------FDLEISVIPFIPQLLSSLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSK 1598 (2105)
T ss_pred ---hHHHHHHhhhhhccc------ccccccccchhhhhhhhcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhh
Confidence 112222222222222 22356656666666666556668889999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHhcC
Q 000149 1648 REAAAEIIQAAKKGS 1662 (2037)
Q Consensus 1648 ~~~a~~Il~~~k~~~ 1662 (2037)
...+..+....+.+.
T Consensus 1599 e~~~~~~~~~~~~~~ 1613 (2105)
T COG5032 1599 ESVALSLENKSRTHD 1613 (2105)
T ss_pred HhHHHHHhhhhhcCC
Confidence 666655655555443
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.38 E-value=0.0055 Score=84.73 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=113.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l 1117 (2037)
..++....+.|.|.+|+.+++..+..... ..+.+-.+..+|...++.+....+...- ..+. .
T Consensus 129 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 129 ALRGLAYLGLGQLELAQKSYEQALAIDPR------------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 46788889999999999999987654221 1235668889999999999988886532 1121 1
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
......+...|++++|..+|+++++..|++......+..|+...|+++......+.+....|.... .........+..|
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKK 275 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhc
Confidence 123445678999999999999999999999888888899999999999888887776655554322 2233455678899
Q ss_pred ChhhHHHHhhcc
Q 000149 1198 RWDLMDEYLSGA 1209 (2037)
Q Consensus 1198 ~Wd~lee~l~~~ 1209 (2037)
+++...+.+...
T Consensus 276 ~~~~A~~~~~~~ 287 (899)
T TIGR02917 276 NYEDARETLQDA 287 (899)
T ss_pred CHHHHHHHHHHH
Confidence 998877766543
No 41
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0017 Score=87.48 Aligned_cols=474 Identities=18% Similarity=0.247 Sum_probs=251.6
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
+-+.++.++......+|+--+-.-+||++--+. .++...-+++.+.| +...+...||.++|.++..+-++-+
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~---~~~E~~~~vr~k~~dviAeia~~~l- 112 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEI---IQSETEPSVRHKLADVIAEIARNDL- 112 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHhcc-
Confidence 455677788887788887333333444443333 23333344445455 7788999999999999999775555
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH---HHHHHHHHHHhCCCCcchHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF---LFLLILLVEQLDNPHVTVRMN 300 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~---~~~l~~Li~~L~~~n~~~~~~ 300 (2037)
++ +|.+ .+..+.+ -+...|++++|+.+..+..+- ..++...- --.+-+|...++-++..||..
T Consensus 113 -------~e--~WPe--ll~~L~q-~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~ 178 (1075)
T KOG2171|consen 113 -------PE--KWPE--LLQFLFQ-STKSPNPSLRESALLILSSLP--ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVA 178 (1075)
T ss_pred -------cc--chHH--HHHHHHH-HhcCCCcchhHHHHHHHHhhh--hhhccccchhHHHHHHHHHHhccCCcchHHHH
Confidence 33 4544 2223334 445567779999988877763 22233222 234455777888888889999
Q ss_pred HHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccC
Q 000149 301 ASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDN 380 (2037)
Q Consensus 301 a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~ 380 (2037)
|.+-+-..+..+. ..+..++.|+. + +-. .-.++|.++-..+.|
T Consensus 179 a~rA~~a~~~~~~---------------------------~~~~~~~~~~~-l----lP~-----~l~vl~~~i~~~d~~ 221 (1075)
T KOG2171|consen 179 AVRALGAFAEYLE---------------------------NNKSEVDKFRD-L----LPS-----LLNVLQEVIQDGDDD 221 (1075)
T ss_pred HHHHHHHHHHHhc---------------------------cchHHHHHHHH-H----hHH-----HHHHhHhhhhccchH
Confidence 9999888876662 01111222221 0 000 011333333333222
Q ss_pred --hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---cccHHHH--HHHHHHHHhhcCCChH------HHHHhhhHH
Q 000149 381 --DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---QADERRL--LSALEFYCIQTGSDNQ------EIFAAALPA 447 (2037)
Q Consensus 381 --~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~~~~~--~~~l~~~~~~~~~~~~------~~~~~~~~~ 447 (2037)
..+.+.+.+++.. -.+++.+.+..|+.+-+- ..+-++- --+|.|+....+.-++ .+....+|.
T Consensus 222 ~a~~~l~~l~El~e~----~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 222 AAKSALEALIELLES----EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 1223444444442 234444555555554441 1111111 1233344333222111 112222233
Q ss_pred HHHHHHHhhcC---------CCchH--HhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHH
Q 000149 448 LLDELICFVDG---------GDSDE--INERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQ 516 (2037)
Q Consensus 448 ~l~ell~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k 516 (2037)
++. ..+...+ -|.|+ ++.+ ...+++..+|.-+.|...++.++ ..+. .++.+.+..+|
T Consensus 298 ~l~-~mte~~~D~ew~~~d~~ded~~~~~~~--~A~~~lDrlA~~L~g~~v~p~~~--------~~l~-~~l~S~~w~~R 365 (1075)
T KOG2171|consen 298 LLA-MMTEEEDDDEWSNEDDLDEDDEETPYR--AAEQALDRLALHLGGKQVLPPLF--------EALE-AMLQSTEWKER 365 (1075)
T ss_pred HHH-hcCCcccchhhccccccccccccCcHH--HHHHHHHHHHhcCChhhehHHHH--------HHHH-HHhcCCCHHHH
Confidence 321 1111111 11111 1111 12455556665555544444332 2333 45566678888
Q ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHH-----HHHHHHhh
Q 000149 517 KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVI-----SQVFAALI 589 (2037)
Q Consensus 517 ~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll-----~~i~~~li 589 (2037)
+-+|.+|+.+-+=|+.++..-+|+|+.....+|+. |..|+.||.+-.-|-. ++.|.+ +++...++
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st--------dl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST--------DLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh--------hhcHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999985 4577787776555444 444444 34444555
Q ss_pred hhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCCh
Q 000149 590 PFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENL 669 (2037)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~ 669 (2037)
..++... .+......|..++++.-.--++.+. |.+|.+-+ + .|..-.++.++
T Consensus 438 ~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~---------pYLd~lm~--~----------------~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 438 ALLDSTQ-NVRVQAHAAAALVNFSEECDKSILE---------PYLDGLME--K----------------KLLLLLQSSKP 489 (1075)
T ss_pred HHhcccC-chHHHHHHHHHHHHHHHhCcHHHHH---------HHHHHHHH--H----------------HHHHHhcCCch
Confidence 5555432 2333334455566554332345555 23333211 0 34445567788
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 670 NVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 670 ~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
.|+.++.+.+...=..-++.+.. ....++-.|.......+. .+...++-.+-+|+|.||
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~p-----------Y~d~~Mp~L~~~L~n~~~-~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIP-----------YFDRLMPLLKNFLQNADD-KDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh-----------HHHHHHHHHHHHHhCCCc-hhhHHHHhhHHHHHHHHH
Confidence 99999999988764444433332 233333333332221110 122467777788999987
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.25 E-value=0.0032 Score=87.03 Aligned_cols=410 Identities=12% Similarity=0.046 Sum_probs=230.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l 1117 (2037)
..++....+.|.|..|+.+++..+..... ....+..|..+|...++++....+.... ..+. .
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 46788888999999999999987653211 1235667889999999999877776421 1111 2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
......+...|++++|..+|+++++..|++......+..++...|+++......+......|.....| .....+....|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW-LMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcC
Confidence 22344567899999999999999999999888888888999999999988888777665555443333 23456677889
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+|+...++....-.. .+.+......++.++. ..++..+..+.++.+.. ..+...+.+...-.....
T Consensus 616 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~- 681 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL------QPDSALALLLLADAYA--VMKNYAKAITSLKRALE-----LKPDNTEAQIGLAQLLLA- 681 (899)
T ss_pred CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHH-
Confidence 998877766544221 0112223334444442 34555444444433221 111111222222222222
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
..+.++...+...... . .+...... .+..+.-....++ .+-+=.+++ ++..... ...+...+.
T Consensus 682 --~~~~~~A~~~~~~~~~--~--~~~~~~~~----~~~~~~~~~~g~~--~~A~~~~~~-~~~~~~~----~~~~~~l~~ 744 (899)
T TIGR02917 682 --AKRTESAKKIAKSLQK--Q--HPKAALGF----ELEGDLYLRQKDY--PAAIQAYRK-ALKRAPS----SQNAIKLHR 744 (899)
T ss_pred --cCCHHHHHHHHHHHHh--h--CcCChHHH----HHHHHHHHHCCCH--HHHHHHHHH-HHhhCCC----chHHHHHHH
Confidence 2233333333321000 0 00111100 0111111111111 111111222 1111110 145677788
Q ss_pred HHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+.++.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++.++..| .
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-------------------~--- 802 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-------------------D--- 802 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-------------------C---
Confidence 8888888888887777765543 334566677777778888888888877765211 0
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~ 1515 (2037)
.+.++..+|......++ .+++..|.++.++.|.-...+..+|..+... |
T Consensus 803 --------------~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------g 851 (899)
T TIGR02917 803 --------------NAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNIPAILDTLGWLLVEK--------------G 851 (899)
T ss_pred --------------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------C
Confidence 02234444544444444 4477778888888877777776666554211 0
Q ss_pred cchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCc
Q 000149 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~ 1559 (2037)
-...|+..|-+++..++.. -.....+...++..|.
T Consensus 852 --------~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 852 --------EADRALPLLRKAVNIAPEA-AAIRYHLALALLATGR 886 (899)
T ss_pred --------CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCC
Confidence 1235888888888877652 2333444555555553
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.01 E-value=0.033 Score=80.59 Aligned_cols=382 Identities=13% Similarity=0.087 Sum_probs=199.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh--hHh-----------H
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK--TWC-----------M 1187 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~--~l~-----------~ 1187 (2037)
...+...|++++|...|+++++..|++.+.+..+-.++...|+++....+.+......|+... .|. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 566788999999999999999999999988888889999999999888877766554443211 111 1
Q ss_pred HHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhH
Q 000149 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2037)
Q Consensus 1188 ~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy 1267 (2037)
...+++.+.|+++.-.+++...-.. .+.+..-...+|.++ ...++..+..+..+++-.. .+. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~--~~~g~~~eA~~~y~~aL~~-----~p~----~ 418 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVA--MARKDYAAAERYYQQALRM-----DPG----N 418 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCC----C
Confidence 1235677899999888777654321 011122233455444 4456665555444433221 111 1
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHH-----HHHHHHhhhccCChhhhhhhHHHHHhhcCCC
Q 000149 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM-----ANWENRLKYTQPSLWAREPLLAFRRMVFGAS 1342 (2037)
Q Consensus 1268 ~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~ 1342 (2037)
..++..+..++.-...+++..++...... ......... ..|..+-......=+..+-+=.+++++ .
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~------~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~-- 489 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSAS------QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-A-- 489 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHH------HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-H--
Confidence 12222222332222344444443211000 000000000 001111000000001111222223221 1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc-c
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS-T 1419 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~-~ 1419 (2037)
..++....+...|.+..+.|+++.|...+.++.... .+......+.++...|+..+|+..|+.....-...-+.. .
T Consensus 490 -~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 -LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 122234567788888888888888888888876543 445555666677778888888888776432100000000 0
Q ss_pred -c------cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1420 -A------ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1420 -~------~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
. ......+. .-++.... .......+....+++.+|.|+.+.|+ .++++..|+++++.+|....+++.
T Consensus 569 ~~l~~~~~l~~a~~l~-~~G~~~eA---~~~l~~~p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLR-DSGKEAEA---EALLRQQPPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHH-HCCCHHHH---HHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 00000000 00000000 00000111223467788999888776 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1493 la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
+|..|-..- -...|+..|-+.+...+... ....++-.+|...|
T Consensus 643 la~~~~~~g----------------------~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g 685 (1157)
T PRK11447 643 LIEVDIAQG----------------------DLAAARAQLAKLPATANDSL-NTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHCC----------------------CHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCC
Confidence 987653220 11256667777666554432 12334445555544
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.00 E-value=0.02 Score=79.21 Aligned_cols=385 Identities=12% Similarity=0.076 Sum_probs=217.4
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHhc--cC-C---hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH
Q 000149 1086 DEDVSFLMEIYSFLDEPDGLSGLARLHK--SL-S---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL 1159 (2037)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~-~---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~ 1159 (2037)
...+.-...|+.-.++.+.+..++.... .+ + .......+...|+|.+|...|+++++..|++.+...++..++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888999999999999998876322 11 1 2223456899999999999999999999999999999999999
Q ss_pred hccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcC
Q 000149 1160 NMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKK 1239 (2037)
Q Consensus 1160 ~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~ 1239 (2037)
+.|+++..+...+.+....|+... +..+ ..+....|+.+.-...+...-.. .+.+......++.++. ..+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~l-a~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~--~~~ 164 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLAL-AYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALR--NNR 164 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH--HCC
Confidence 999999999999888877776555 4433 34556778877666655443221 1112223333444332 333
Q ss_pred CcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh----------------hHHHHHHHHHHhhccccccccCCCC
Q 000149 1240 DHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH----------------LLQELEDFHAILVNDSFLEKSFLPS 1303 (2037)
Q Consensus 1240 d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh----------------~L~ELee~~~~~~~~~~~~~~~~~~ 1303 (2037)
..+...+.++.+- ..+=..... .......++++. .+.+++....... ..+ ..
T Consensus 165 ~~e~Al~~l~~~~---~~p~~~~~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p--~~ 232 (765)
T PRK10049 165 LSAPALGAIDDAN---LTPAEKRDL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNP--DA 232 (765)
T ss_pred ChHHHHHHHHhCC---CCHHHHHHH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCC--cc
Confidence 3333332332110 000000000 000011111111 1111111111100 000 00
Q ss_pred hHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--
Q 000149 1304 DLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-- 1381 (2037)
Q Consensus 1304 ~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-- 1381 (2037)
.+ .....+-.|+-.+-..-+..+-+-..++ ++......+.....|+ +.+....|+++.|...+.++.+..+.
T Consensus 233 ~~---~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 233 TA---DYQRARIDRLGALLARDRYKDVISEYQR-LKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ch---HHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 01 1111222222222111122223333344 2222211123355665 77888999999999998887654322
Q ss_pred ----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHH
Q 000149 1382 ----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457 (2037)
Q Consensus 1382 ----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ 1457 (2037)
......+..+-..|+.++|+..++......|.... ..+... .+ -+.....+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~------~~~~~~---~~------------p~~~~~~a~~~~ 365 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR------LYGSPT---SI------------PNDDWLQGQSLL 365 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe------ecCCCC---CC------------CCchHHHHHHHH
Confidence 22333344556889999999999988765432210 000000 00 011234567778
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhc
Q 000149 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLH 1537 (2037)
Q Consensus 1458 akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~ 1537 (2037)
|..+...|+ .+++++.|.+++...|.....++.+|.-+...- -...|+..|-+++.
T Consensus 366 a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g----------------------~~~~A~~~l~~al~ 421 (765)
T PRK10049 366 SQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARG----------------------WPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHh
Confidence 887777765 788999999999999999999998887553220 11357778888887
Q ss_pred cCCcch
Q 000149 1538 RGHKNL 1543 (2037)
Q Consensus 1538 ~g~~~~ 1543 (2037)
..+.+.
T Consensus 422 l~Pd~~ 427 (765)
T PRK10049 422 LEPRNI 427 (765)
T ss_pred hCCCCh
Confidence 776653
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.93 E-value=0.012 Score=84.90 Aligned_cols=371 Identities=12% Similarity=0.002 Sum_probs=200.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCChh----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l~---- 1118 (2037)
..+.+...-|.|..|+-+++..+..... ..+.+..|..+|...++.+........ ...++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 4577788899999999999998765321 134677899999999999988877652 2222110
Q ss_pred --------------HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1119 --------------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1119 --------------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
.+...+...|++++|..+|+++++..|++.....++=.++...|+++....+.+..+...|.....
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 122345688999999999999999999998888888899999999998888877766555543322
Q ss_pred HhHHHHHHHHhcCChhhHHHHhhcccccCccccCCC----CCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhh
Q 000149 1185 WCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSE----SNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260 (2037)
Q Consensus 1185 l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~----~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~ 1260 (2037)
+ ..+-..++.++++....++....... .....+ .........+.+ ....++..+..+.++++-.. .
T Consensus 422 ~--~~L~~l~~~~~~~~A~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~a~~--~~~~g~~~eA~~~~~~Al~~-----~ 491 (1157)
T PRK11447 422 V--RGLANLYRQQSPEKALAFIASLSASQ-RRSIDDIERSLQNDRLAQQAEA--LENQGKWAQAAELQRQRLAL-----D 491 (1157)
T ss_pred H--HHHHHHHHhcCHHHHHHHHHhCCHHH-HHHHHHHHHHhhhhHHHHHHHH--HHHCCCHHHHHHHHHHHHHh-----C
Confidence 2 12222334456666555554332100 000000 000011112222 23345544444433332211 0
Q ss_pred hhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHH-------------HHHhhhccCChhh
Q 000149 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW-------------ENRLKYTQPSLWA 1327 (2037)
Q Consensus 1261 a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W-------------~~RL~~~~~~~~~ 1327 (2037)
+++-.-.+..-.-+....+.+++...+..... ..+ .+.+..-..... -++++....+
T Consensus 492 ---P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~-~~P---~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~--- 561 (1157)
T PRK11447 492 ---PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ-QKP---NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN--- 561 (1157)
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC---
Confidence 11111112222222233333443333321000 000 111100000000 0011000000
Q ss_pred hhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHH
Q 000149 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQN 1407 (2037)
Q Consensus 1328 ~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2037)
..+..+... ......+..|...+..|+++.|...+.. .-..+...+..|.++...|+..+|+..++.+
T Consensus 562 -~~~~~l~~~---------l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 562 -SNIQELAQR---------LQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred -hhHHHHHHH---------HhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000000 0012346677788888888888877663 2235567778888888888888888888887
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1408 i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+...| . ...+++-+|+.+...|+ .+++.+.|..+.+..|.-.
T Consensus 630 l~~~P-------------------~-----------------~~~a~~~la~~~~~~g~--~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 630 LTREP-------------------G-----------------NADARLGLIEVDIAQGD--LAAARAQLAKLPATANDSL 671 (1157)
T ss_pred HHhCC-------------------C-----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHhccCCCCh
Confidence 65311 1 02345566666655554 6778888888888877766
Q ss_pred HHHHHHHhhh
Q 000149 1488 KGYFYMAKYC 1497 (2037)
Q Consensus 1488 K~~~~la~y~ 1497 (2037)
..+..+|.-+
T Consensus 672 ~~~~~la~~~ 681 (1157)
T PRK11447 672 NTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.79 E-value=0.024 Score=76.48 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=66.0
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.++...+-+.|++++|..+|++++...|+ ...+.++-.|+..+|+|+..+...+..+...|+..+-+. ....+--.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~-~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN-RRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHc
Confidence 344566778899999999999999998886 345667788999999999888877776666665544333 345677789
Q ss_pred CChhhHHHHhh
Q 000149 1197 GRWDLMDEYLS 1207 (2037)
Q Consensus 1197 g~Wd~lee~l~ 1207 (2037)
|+|+.-...+.
T Consensus 208 g~~~eA~~~~~ 218 (615)
T TIGR00990 208 GKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHH
Confidence 99987654443
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.75 E-value=0.0066 Score=80.08 Aligned_cols=326 Identities=16% Similarity=0.089 Sum_probs=180.5
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHH---
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL--- 1122 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil--- 1122 (2037)
.|.-.+--|.+.+|...++.-|++.... ...+..|.+||-+.++..-..-.+-.-..++..+.-+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRN------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccc------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3445555699999999999988864321 2458899999999987665544432211111222122
Q ss_pred ---HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch----hhhhhHh----HH---
Q 000149 1123 ---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP----QYKKTWC----MQ--- 1188 (2037)
Q Consensus 1123 ---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p----~~~~~l~----~~--- 1188 (2037)
..++.|+|..|--||.++++..|++.........=++++|++.....-..-+....| ++..+.. .+
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 248999999999999999999999987766666667788887654443333444444 1111100 00
Q ss_pred --HHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHH-------------
Q 000149 1189 --GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQ------------- 1253 (2037)
Q Consensus 1189 --~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~------------- 1253 (2037)
.-|.| |..++.++..... ..+.-+..+. |-+.|..+..+.....|..-+.
T Consensus 293 ~~~~e~a-----~~~le~~~s~~~~---------~~~~ed~ni~-ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 293 HNERERA-----AKALEGALSKEKD---------EASLEDLNIL-AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred hhHHHHH-----HHHHHHHHhhccc---------cccccHHHHH-HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 11333 4566666652111 1122233333 2333444444444444444333
Q ss_pred ----HHhhhhhhhch-hhHHhhh-HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhh
Q 000149 1254 ----VLIAPLAAAGM-DSYTRAY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWA 1327 (2037)
Q Consensus 1254 ----~l~~~L~a~~~-eSy~r~y-~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~ 1327 (2037)
.--.++...+. .||.=-. -.++-|+.|.|.|....+..-.. .+.. ...+...+.....+=|-..+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~--~~n~--~~~d~~dL~~d~a~al~~~~----- 428 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV--EDNV--WVSDDVDLYLDLADALTNIG----- 428 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH--HhcC--ChhhhHHHHHHHHHHHHhcc-----
Confidence 00111222222 2444444 66777888877665444332100 0000 01111122222221111111
Q ss_pred hhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHH
Q 000149 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQ 1405 (2037)
Q Consensus 1328 ~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2037)
.+=.+++-...=...-...-+..|.+.|+.-+.-|.++.|..+--.+-.+.+ -++.|--|-|+-..|++++|+.+|+
T Consensus 429 -~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 429 -KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred -cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 2222222111000111112256799999999999999999988887766643 4688888999999999999999998
Q ss_pred HHh
Q 000149 1406 QNL 1408 (2037)
Q Consensus 1406 ~~i 1408 (2037)
..+
T Consensus 508 ~~~ 510 (895)
T KOG2076|consen 508 QII 510 (895)
T ss_pred ccc
Confidence 765
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.69 E-value=0.091 Score=71.03 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHH
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTH 1170 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~ 1170 (2037)
..|.+.|+|++|..+|+.+++.+|++......+-.|+..+|+|+..+..
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4467889999999999999999999888877888889999999866543
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.68 E-value=0.033 Score=75.61 Aligned_cols=346 Identities=12% Similarity=0.003 Sum_probs=201.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l~ 1118 (2037)
+.+.+..+-|.+..|+-.++......... .+.+..|.-.+-..+++|........- ..|+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~------------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG------------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc------------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 56788889999999999999877654321 234556667777788888877765521 1221 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|...|+++++..|++...+..+.+++..+|+++......+.+....|.....+. ..-+.-+.|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~--~~~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA--TCLSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHcCC
Confidence 23456788999999999999999999999988888899999999999877766655444443322221 1223567888
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.-.+.....-.. ...........++.++ ...++..+..+.+ +..+.. . .... ..+ .
T Consensus 193 ~~eA~~~~~~~l~~-----~~~~~~~~~~~l~~~l--~~~g~~~eA~~~~---~~al~~--~---p~~~-~~~------~ 250 (656)
T PRK15174 193 LPEDHDLARALLPF-----FALERQESAGLAVDTL--CAVGKYQEAIQTG---ESALAR--G---LDGA-ALR------R 250 (656)
T ss_pred HHHHHHHHHHHHhc-----CCCcchhHHHHHHHHH--HHCCCHHHHHHHH---HHHHhc--C---CCCH-HHH------H
Confidence 88877665543210 0000111111122222 2334443333322 222211 1 1110 000 0
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
.|..+ +... + ...+.. .+-+-.+++++ .. .+.....|...+.+
T Consensus 251 ~Lg~~-----l~~~------G---~~~eA~-------------------~~A~~~~~~Al-~l---~P~~~~a~~~lg~~ 293 (656)
T PRK15174 251 SLGLA-----YYQS------G---RSREAK-------------------LQAAEHWRHAL-QF---NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHH-----HHHc------C---CchhhH-------------------HHHHHHHHHHH-hh---CCCCHHHHHHHHHH
Confidence 00000 0000 0 000000 00111122221 11 12335678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+..-.+..+++.|+.++|+..++..+...| .
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-------------------~---- 350 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-------------------V---- 350 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------------------c----
Confidence 9999999999999999887653 44666789999999999999999998875321 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHH-hhhHHHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA-KYCDDVL 1501 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la-~y~d~l~ 1501 (2037)
.+.++..+|.-+...|+ .+++++.|+++++.+|+.....|.-+ .-|++.+
T Consensus 351 -------------~~~~~~~~a~al~~~G~--~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 351 -------------TSKWNRYAAAALLQAGK--TSEAESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 01123333444445554 88999999999999887544333322 3344443
No 50
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.50 E-value=0.045 Score=69.11 Aligned_cols=272 Identities=15% Similarity=0.083 Sum_probs=158.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh---hhhhHhHHHHHHHHhcC
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ---YKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~---~~~~l~~~~~EAAWrlg 1197 (2037)
.+.+...|++++|...|+++++..|++...+..+-.++...|+++......+.+....+. ...........+.+..|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 455678899999999999999999999888888899999999999888777665443211 11111223356678889
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++.-.+++...-.. .+........++.+ ....++..+..+..+.+.. .. ....... +..+
T Consensus 122 ~~~~A~~~~~~~l~~------~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~~~-----~~---~~~~~~~---~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDE------GDFAEGALQQLLEI--YQQEKDWQKAIDVAERLEK-----LG---GDSLRVE---IAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcC------CcchHHHHHHHHHH--HHHhchHHHHHHHHHHHHH-----hc---CCcchHH---HHHH
Confidence 999888877655321 01111222223332 2334444433333322211 00 0000000 0000
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
...+-. .+... . +.......++.-+.. .......|+..++
T Consensus 183 --~~~la~--~~~~~---------~---~~~~A~~~~~~al~~------------------------~p~~~~~~~~la~ 222 (389)
T PRK11788 183 --YCELAQ--QALAR---------G---DLDAARALLKKALAA------------------------DPQCVRASILLGD 222 (389)
T ss_pred --HHHHHH--HHHhC---------C---CHHHHHHHHHHHHhH------------------------CcCCHHHHHHHHH
Confidence 000000 00000 0 001111111111111 0112346888999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCh---HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGAPN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~p~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~ 1434 (2037)
+..+.|+++.|...+.++...+++. +...-+..+...|+.++|+..++.++... |.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-------------------p~-- 281 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-------------------PG-- 281 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CC--
Confidence 9999999999999999987664432 33456788999999999999999876521 10
Q ss_pred CCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
. .....+|+.+...|+ .+++.+.|.++++.+|+....+
T Consensus 282 ------------~----~~~~~la~~~~~~g~--~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 282 ------------A----DLLLALAQLLEEQEG--PEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred ------------c----hHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCcCHHHHH
Confidence 0 123566777766665 7889999999999999876443
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.46 E-value=0.36 Score=64.34 Aligned_cols=446 Identities=17% Similarity=0.198 Sum_probs=232.4
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh-HHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhh-cccc
Q 000149 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAA-DDPLILETLLESTAELMMAV-DVHS 276 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~i~eTll~~~~~i~~~~-~~~~ 276 (2037)
.+..+-.|+-.+-.+..-+.|-- = |++ ..-+.+- ..|+-++.++.... +++.|+=-++..+|++-.+- ..=.
T Consensus 95 ~s~keq~rdissi~Lktvi~nl~--P-~~~--~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 95 LSGKEQLRDISSIGLKTVIANLP--P-SSS--SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred ccchhhhccHHHHHHHHHHhcCC--C-ccc--cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 56666777776666665331100 0 110 1112222 45777778777774 44558877788777763211 0011
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCC
Q 000149 277 QHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGV 356 (2037)
Q Consensus 277 e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~ 356 (2037)
+-....+-+|+-||+++-..||-.|..-|-.+|-.++.-.| ..+-+.+.++|-.++||++-=.
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----------~~li~~Ll~~L~~~~q~~~~rt------ 232 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----------VELIEHLLKGLSNRTQMSATRT------ 232 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHhccCCCCchHHHHH------
Confidence 23445777899999999999999999999998766644322 2444567788888877744311
Q ss_pred ChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCC-------chhHHhhhHHHHHHHHhccccHHHH-HHHHHH
Q 000149 357 ETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTD-------MVPLIVTWIPKVLAFALHQADERRL-LSALEF 428 (2037)
Q Consensus 357 ~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~-------~~~l~~~~~~~Ila~ll~~~~~~~~-~~~l~~ 428 (2037)
-++.|.+|+++-+.. .+|++.+++-+| +.+++++ +.||+-
T Consensus 233 --------------------------~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~------e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 233 --------------------------YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI------EEDDDELREYCLQA 280 (1233)
T ss_pred --------------------------HHHHHHHHHHHhcchhhcccchhhHHHHHHhccc------ccCcHHHHHHHHHH
Confidence 123455666655543 344444444333 3344444 677776
Q ss_pred HHhhcCCChHHHHHhhhHHHHHHHHHhhc------CCC-chHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHH
Q 000149 429 YCIQTGSDNQEIFAAALPALLDELICFVD------GGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN 501 (2037)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~ell~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~ 501 (2037)
+..+....++++.. ..|.++.-++-++. .++ .|+. ...+.. .+ ++=
T Consensus 281 le~fl~rcp~ei~p-~~pei~~l~l~yisYDPNy~yd~~eDed-----------~~~~ed---~e---Dde--------- 333 (1233)
T KOG1824|consen 281 LESFLRRCPKEILP-HVPEIINLCLSYISYDPNYNYDTEEDED-----------AMFLED---EE---DDE--------- 333 (1233)
T ss_pred HHHHHHhChhhhcc-cchHHHHHHHHHhccCCCCCCCCccchh-----------hhhhhc---cc---cch---------
Confidence 66666666666655 45666643332221 111 1111 000100 00 000
Q ss_pred HhhhhhcCCCChHHH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC-----
Q 000149 502 SIDRKMLHAEDLSLQ--KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP----- 574 (2037)
Q Consensus 502 ~~~~~l~~~~~~~~k--~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~----- 574 (2037)
-++.-.+.+|+.+| |.|.+++..+|---...+..|...+.--|.+-+.+.| ...+..+.++++..|..+.+
T Consensus 334 -~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE-EnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 334 -QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE-ENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred -hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01112233566655 5678999888854433444444444444444442111 24455555666655543222
Q ss_pred ------------cchhhHHHH----HHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccC-----CCCCC
Q 000149 575 ------------SSTKHVISQ----VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEF-----PLLPS 633 (2037)
Q Consensus 575 ------------~~l~~ll~~----i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-----p~Lp~ 633 (2037)
.++ .+|+. |+.++-+.+. +.+-+++.....+|..||.--++.+.+|+..+ +.|++
T Consensus 412 ~d~d~~e~~g~~s~~-~~L~~~~~~iVkai~~qlr---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDL-SMLSDQVPLIVKAIQKQLR---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred cCchhhhccCCccch-HHHHhhhHHHHHHHHHHHh---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 111 34443 3344444443 32334678899999999999999999998776 44555
Q ss_pred chhhHHH--------HHHHHHhcCC--CCHHHHHH-HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCc
Q 000149 634 IAALTEV--------NKAIQEARGP--MTLKDQLL-AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDL 702 (2037)
Q Consensus 634 ip~L~~v--------~~~l~~~r~~--~~l~~~l~-~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~ 702 (2037)
-...+.. ...+...... -+....+. ..+-.++..-..|..+||--...+.+.-+ .+-.+-.++-.
T Consensus 488 kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir----pl~~~~~~d~~ 563 (1233)
T KOG1824|consen 488 KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR----PLQPPSSFDAS 563 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc----ccCCCccCCCC
Confidence 3333322 1222111100 01111111 12223333334556666655555443322 22121122223
Q ss_pred hhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 703 ~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
+.+.++..+-|.-... +..++++++++-.|+|.+
T Consensus 564 ~~v~~m~~~tl~rL~a---~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKA---TDSDQEVKERAISCMGQI 597 (1233)
T ss_pred hhHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHH
Confidence 5677777766654433 335689999999999976
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.42 E-value=0.065 Score=72.86 Aligned_cols=309 Identities=11% Similarity=-0.011 Sum_probs=172.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
-++.+...|++.+|++.|+..++..|++.+....+..|....|+++......+.+....|+...-+. ....+.-..|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~-~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL-LVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHcCCH
Confidence 3566778888888888888888888888877777778888888888887777777666665433332 234556677888
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+.-.+.+...-.. .+........+++++ ...++.++..+. .+..+. ..+...+.+. .+..+..
T Consensus 127 ~~Ai~~l~~Al~l------~P~~~~a~~~la~~l--~~~g~~~eA~~~---~~~~~~--~~P~~~~a~~----~~~~l~~ 189 (656)
T PRK15174 127 ATVADLAEQAWLA------FSGNSQIFALHLRTL--VLMDKELQAISL---ARTQAQ--EVPPRGDMIA----TCLSFLN 189 (656)
T ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHHHH--HHCCChHHHHHH---HHHHHH--hCCCCHHHHH----HHHHHHH
Confidence 8776665543221 011222333444443 234444433332 221111 1111111111 1112333
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
..++++.......... ..+. ...... ....+.-.-.. +..+-+-.+++++ .. ..+....|...+.+.
T Consensus 190 ~g~~~eA~~~~~~~l~-~~~~--~~~~~~----~~l~~~l~~~g--~~~eA~~~~~~al-~~---~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 190 KSRLPEDHDLARALLP-FFAL--ERQESA----GLAVDTLCAVG--KYQEAIQTGESAL-AR---GLDGAALRRSLGLAY 256 (656)
T ss_pred cCCHHHHHHHHHHHHh-cCCC--cchhHH----HHHHHHHHHCC--CHHHHHHHHHHHH-hc---CCCCHHHHHHHHHHH
Confidence 3445554443321000 0000 000000 00000000011 1112233333322 21 223467888999999
Q ss_pred HHcCChHH----HHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000149 1360 RLAGHYET----ATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2037)
Q Consensus 1360 RKag~~~~----A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~ 1433 (2037)
...|+++. |...+.+|....+ +.+....+.++...|+..+|+..+++++...| .
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-------------------~- 316 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-------------------D- 316 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C-
Confidence 99999985 6777777766543 35677889999999999999999999875211 1
Q ss_pred CCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
.+.++..+|.-+...|+ .++++..|.++.+.+|.....+...|..+
T Consensus 317 ----------------~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 317 ----------------LPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred ----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 12345556666666665 78889999999999998665555555433
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.39 E-value=0.12 Score=65.22 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=85.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccCCh------
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLSL------ 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~~l------ 1117 (2037)
..+..+..+|.|..|+.+++..+... |. ....+..|..+|...++.+....+... ...+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-----PE-------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-----cc-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 35777889999999999999987642 21 124567788899999998877766542 222211
Q ss_pred ---hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1118 ---QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1118 ---~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
...+..|.+.|++++|..+|+.+++..|.+......+..++...|+|+......+.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 122456778899999999999999888877777777788888888888766655544
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.26 E-value=0.44 Score=67.21 Aligned_cols=356 Identities=8% Similarity=-0.040 Sum_probs=208.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
+.++..+++-|-+.+|=..+++-+....+ +..+....+.|+.+|..-+-+|+-.-+...-..++...+-.
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 449 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGD---------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ- 449 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcc---------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH-
Confidence 35677788899999999999997653211 11134567799999988777666655544322222222322
Q ss_pred HHhhcCHHHHH---HHHHHHHccCCC--chhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHH-HHHHHhcC
Q 000149 1124 NKKSGNWAEVF---TSCEQALQMEPT--SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG-VQAAWRLG 1197 (2037)
Q Consensus 1124 ~E~~G~W~~A~---~~YE~~Lq~~p~--~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~-~EAAWrlg 1197 (2037)
-.|+..+|. .++..++...|+ +...+..+-.|+.. |+++..+..........|+.. ..++ ..+.-..|
T Consensus 450 --~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---~~L~lA~al~~~G 523 (987)
T PRK09782 450 --WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---QHRAVAYQAYQVE 523 (987)
T ss_pred --HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---HHHHHHHHHHHCC
Confidence 234554444 445555566676 77766777788887 777666654444444455422 2222 22334688
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++...+........ ++........| ...+..++..+....++.+... . .+.....+.....+
T Consensus 524 r~eeAi~~~rka~~~-------~p~~~a~~~la--~all~~Gd~~eA~~~l~qAL~l-----~---P~~~~l~~~La~~l 586 (987)
T PRK09782 524 DYATALAAWQKISLH-------DMSNEDLLAAA--NTAQAAGNGAARDRWLQQAEQR-----G---LGDNALYWWLHAQR 586 (987)
T ss_pred CHHHHHHHHHHHhcc-------CCCcHHHHHHH--HHHHHCCCHHHHHHHHHHHHhc-----C---CccHHHHHHHHHHH
Confidence 888776665543211 01111122233 3334556655544444433221 0 11111111000000
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
....+.+++.. .+++++ .. ++. ...|...|.
T Consensus 587 ~~~Gr~~eAl~--------------------------------------------~~~~AL-~l---~P~-~~a~~~LA~ 617 (987)
T PRK09782 587 YIPGQPELALN--------------------------------------------DLTRSL-NI---APS-ANAYVARAT 617 (987)
T ss_pred HhCCCHHHHHH--------------------------------------------HHHHHH-Hh---CCC-HHHHHHHHH
Confidence 00011111111 112211 11 112 457899999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+.++.|+++.|..++.+|....+ +.+....+-.+...|+..+|+..++.+++..| .
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-------------------~--- 675 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-------------------D--- 675 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C---
Confidence 99999999999999999988754 45677788889999999999999999876322 1
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~ 1515 (2037)
-+.++..+|.-+...|+ .+++...|++|+++.|......+.+|......+
T Consensus 676 --------------~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~-------------- 725 (987)
T PRK09782 676 --------------DPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALITPLTPEQNQQRF-------------- 725 (987)
T ss_pred --------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH--------------
Confidence 13456667776666665 788999999999999988777776665543222
Q ss_pred cchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1516 PSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
+...+...|-+...+...
T Consensus 726 --------~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 726 --------NFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred --------HHHHHHHHHHHHhhcCcc
Confidence 234567777777766655
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.12 E-value=0.18 Score=64.55 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH-HHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV-HMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~-~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
....+..+++|.++|.++.|..++.++....+... .++.|.++++.|++++|.+.-++++.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999988765554 48999999999999999999988865
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.10 E-value=0.86 Score=63.35 Aligned_cols=381 Identities=9% Similarity=-0.015 Sum_probs=209.5
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC-h---hHH
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS-L---QDE 1120 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~-l---~~q 1120 (2037)
...|..-|.+..|+-.++...... | .....+..|..+|...++.+...-.+.. ...+. . ...
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-----~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-----Q-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 366778899999998888765411 1 1223477899999999999988877753 12222 1 123
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+..+-..|+.++|+..++++++..|++.. ...+-.++...|+++..+...+......|+...-+..+ ..+.-..|.-+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-a~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-VQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCChH
Confidence 45567899999999999999999999988 77777788899999988888877777667654333322 33444556665
Q ss_pred hHHHHhhcccccCccccCCCCCc------chHHHHHHHHHHHHcCCcchH---HHHHHHHHHHHhh-hhhhhchhhHHhh
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNA------SFDMDVAKILQAMMKKDHFSV---SDKIGVSKQVLIA-PLAAAGMDSYTRA 1270 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~------~f~~~l~kaLlal~~~d~~~f---~~~I~~aR~~l~~-~L~a~~~eSy~r~ 1270 (2037)
...+.+...... ++. .......++.+.....+...+ .+.++.....+.. +-.+.....+.++
T Consensus 168 ~Al~~l~~~~~~--------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 168 PALGAIDDANLT--------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 333333322110 000 011111111111000111112 2222222221111 1111111234443
Q ss_pred h-HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCC-chh
Q 000149 1271 Y-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG-AEV 1348 (2037)
Q Consensus 1271 y-~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~-~~~ 1348 (2037)
+ +.+..|-...+.+++........ ... ...+.. ...|-..+..-..++. +-+-.+++ ++...... ...
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~--~~~P~~---a~~~la~~yl~~g~~e--~A~~~l~~-~l~~~p~~~~~~ 309 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLK--AEG--QIIPPW---AQRWVASAYLKLHQPE--KAQSILTE-LFYHPETIADLS 309 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhh--ccC--CCCCHH---HHHHHHHHHHhcCCcH--HHHHHHHH-HhhcCCCCCCCC
Confidence 2 21222223334444444332211 000 000110 1112222222222221 11222333 22221111 011
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------------C-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA------------P-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~------------p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2037)
...+..++....+.|+++.|...+.++....+ | .+..-.|.++-..|+..+|+..+++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23455666666899999999999888765432 1 245678899999999999999999987632
Q ss_pred CcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000149 1412 PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2037)
Q Consensus 1412 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~ 1491 (2037)
| .+ ..+++.+|.-+...|+ .+++.+.|++|.+++|.-...++
T Consensus 390 P-------------------~n-----------------~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 390 P-------------------GN-----------------QGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred C-------------------CC-----------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHH
Confidence 2 11 2355666666655555 89999999999999999887777
Q ss_pred HHHhhh
Q 000149 1492 YMAKYC 1497 (2037)
Q Consensus 1492 ~la~y~ 1497 (2037)
..|.-+
T Consensus 432 ~~a~~a 437 (765)
T PRK10049 432 EQAWTA 437 (765)
T ss_pred HHHHHH
Confidence 776643
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.08 E-value=0.14 Score=67.53 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=109.3
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
.|..|=+...+.|.++| ++|.+++.=...+.+ ..+...-|..+|.|++..||.-++++|....+++..
T Consensus 43 lf~~L~~~~~e~v~~~~-~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------- 110 (503)
T PF10508_consen 43 LFDCLNTSNREQVELIC-DILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------- 110 (503)
T ss_pred HHHHHhhcChHHHHHHH-HHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--------
Confidence 66667777777776655 999999997775543 233445677788999999999999999887633321
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHH-HHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFL-LILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~-l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
....-....++..+-..+ .-.|..|.+..+..+..|.+-...-.++|..- +-.|..-++++|.++|.-+|..+..+|+
T Consensus 111 ~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 011112233555565545 34566699999999999855222111222112 3346666677799999999999999987
Q ss_pred hhhccCcccccchhhhhhhhhhHHHHHhhcC
Q 000149 311 FHLKGGCELLVSKAVLICNELFDYLSVRLAS 341 (2037)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~ 341 (2037)
+....- ... .-..+++.+++.+-+
T Consensus 190 ~S~~~~-----~~~--~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 190 HSPEAA-----EAV--VNSGLLDLLLKELDS 213 (503)
T ss_pred cCHHHH-----HHH--HhccHHHHHHHHhcC
Confidence 763321 111 011366777777766
No 58
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=1.2 Score=57.25 Aligned_cols=414 Identities=17% Similarity=0.211 Sum_probs=219.0
Q ss_pred CCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHH-HHHH-HHHhccCC
Q 000149 1039 SAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDG-LSGL-ARLHKSLS 1116 (2037)
Q Consensus 1039 ~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg-~~Gi-~~~r~~~~ 1116 (2037)
.+.+...||.+-++-|.|..|.-|.-.-.++... ..+.+-.|-.||.+..+.|. ..|. ++.|..+.
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t------------~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPT------------NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCC------------cccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 4556778999999999999999988776554321 11234467789999988884 4444 34555443
Q ss_pred hhH----HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh-----------
Q 000149 1117 LQD----ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY----------- 1181 (2037)
Q Consensus 1117 l~~----qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~----------- 1181 (2037)
..+ -.-.+..-|+.++|+..|+.+++..|+.++.++|+--||..-|......+.....++-.|..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 322 22345677999999999999999999999999999999887777554333222222222210
Q ss_pred --------hhhHhHHHHHH------HHh-cC--------ChhhHHHHhhcccccCccccCCCCC-cchHHHHHHHHHHHH
Q 000149 1182 --------KKTWCMQGVQA------AWR-LG--------RWDLMDEYLSGADEEGLLCSSSESN-ASFDMDVAKILQAMM 1237 (2037)
Q Consensus 1182 --------~~~l~~~~~EA------AWr-lg--------~Wd~lee~l~~~~~~gl~~~~~~~~-~~f~~~l~kaLlal~ 1237 (2037)
.+.-+.-++|+ ||. +| -|..+..|-.... .++. ..-..++|..+..++
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHh
Confidence 00001111111 221 11 1333333322111 0111 112234454444443
Q ss_pred cCCcchHHHHHH-HHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHH
Q 000149 1238 KKDHFSVSDKIG-VSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316 (2037)
Q Consensus 1238 ~~d~~~f~~~I~-~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~ 1316 (2037)
.-| +.+. -.|.....+..+..-....-.| .=|.+ |+..+..-.. .. .-++.+..-.+++..
T Consensus 267 ~~d-----~Avs~Y~rAl~lrpn~A~a~gNla~iY----yeqG~--ldlAI~~Ykr------al-~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 267 IFD-----RAVSCYLRALNLRPNHAVAHGNLACIY----YEQGL--LDLAIDTYKR------AL-ELQPNFPDAYNNLAN 328 (966)
T ss_pred cch-----HHHHHHHHHHhcCCcchhhccceEEEE----ecccc--HHHHHHHHHH------HH-hcCCCchHHHhHHHH
Confidence 211 1111 0111111222111110000000 00111 1111211110 00 000111122222222
Q ss_pred HhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHc
Q 000149 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWST 1394 (2037)
Q Consensus 1317 RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~ 1394 (2037)
-|.-.++-... +... -. .+ .+....++..-..+.+-|..|.++.|.+--+.|....+. .+.=--|-++-++
T Consensus 329 ALkd~G~V~ea-~~cY--nk-aL---~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 329 ALKDKGSVTEA-VDCY--NK-AL---RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHhccchHHH-HHHH--HH-HH---HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 22222211110 0000 00 00 011223445567888899999999998887777655322 2333346677788
Q ss_pred CCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000149 1395 RRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVIT 1474 (2037)
Q Consensus 1395 g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~ 1474 (2037)
|.-.+||..-+.+|.-- +..|.++--+|.-+-+.|. .+++++
T Consensus 402 gnl~~Ai~~YkealrI~------------------------------------P~fAda~~NmGnt~ke~g~--v~~A~q 443 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK------------------------------------PTFADALSNMGNTYKEMGD--VSAAIQ 443 (966)
T ss_pred ccHHHHHHHHHHHHhcC------------------------------------chHHHHHHhcchHHHHhhh--HHHHHH
Confidence 99899998888876421 1336666666766666554 778899
Q ss_pred HHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc--hhhhHHH---
Q 000149 1475 LYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPR--- 1549 (2037)
Q Consensus 1475 ~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~--~~q~lpR--- 1549 (2037)
-|.+|++.+|+...+|-.||--|. | .| .+..||..|-.+|...+.+ .++.+..
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~k----D----------sG--------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYK----D----------SG--------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhh----c----------cC--------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 999999999999999998876542 1 11 3457999999999998875 4444433
Q ss_pred HHHHhhhc
Q 000149 1550 LLTLWFDF 1557 (2037)
Q Consensus 1550 lLtLWl~~ 1557 (2037)
++.=|.|+
T Consensus 502 ~vcdw~D~ 509 (966)
T KOG4626|consen 502 IVCDWTDY 509 (966)
T ss_pred HHhcccch
Confidence 33346554
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.74 E-value=1.6 Score=56.10 Aligned_cols=291 Identities=12% Similarity=0.019 Sum_probs=146.2
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC--h--hH-
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--L--QD- 1119 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--l--~~- 1119 (2037)
+..++.-|.|.+|...++....... +| .-.+-...+++.+.++++........ ...++ + .-
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~---~~---------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA---EP---------VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC---CC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 4555666666666666655322110 00 11222445566666666665555432 11111 1 11
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHH---H--
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA---W-- 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAA---W-- 1194 (2037)
+...+-..|++++|+..++..++..|++.....-+...+.+.|+|+.+....+.+.........+.......+. -
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 23345578999999999999999999888766666777888899998777776665431111111111111110 1
Q ss_pred --hcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhH
Q 000149 1195 --RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2037)
Q Consensus 1195 --rlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~ 1272 (2037)
.-...+.+.++....+.. ...+......++. ..+..++.+...+.++.+-.. .. ++....|+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~------~~~~~~l~~~~a~--~l~~~g~~~~A~~~l~~~l~~---~p-----d~~~~~~~ 302 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRH------RRHNIALKIALAE--HLIDCDDHDSAQEIIFDGLKK---LG-----DDRAISLP 302 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHH------HhCCHHHHHHHHH--HHHHCCChHHHHHHHHHHHhh---CC-----CcccchhH
Confidence 112233444433322210 0012233333333 334455555444444322211 11 11111111
Q ss_pred HHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHH
Q 000149 1273 FIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCW 1352 (2037)
Q Consensus 1273 ~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~W 1352 (2037)
.+..... +. + .+.....+..+.|-. ....+.+ +...
T Consensus 303 ~l~~~~~---------l~--------~--~~~~~~~~~~e~~lk------------------------~~p~~~~-~~ll 338 (409)
T TIGR00540 303 LCLPIPR---------LK--------P--EDNEKLEKLIEKQAK------------------------NVDDKPK-CCIN 338 (409)
T ss_pred HHHHhhh---------cC--------C--CChHHHHHHHHHHHH------------------------hCCCChh-HHHH
Confidence 1111110 00 0 011111112222221 1111111 2456
Q ss_pred HHHHHHHHHcCChHHHHHHHHH--Hhhc-CCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1353 LQYAKLCRLAGHYETATRAILE--AQAS-GAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~--a~~~-~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...++++-+.|.++.|...+.+ +.+. +++......|.++|+.|++.+|.+..++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7889999999999999999995 4333 3445566899999999999999999998865
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.68 E-value=2.4 Score=56.16 Aligned_cols=447 Identities=16% Similarity=0.200 Sum_probs=218.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhh------------hhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLK------------TRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~------------~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2037)
+--++...+..+.++ +.+-++..|.+=|.|..+.+..- ........|..++.|++..||.+|+.++.
T Consensus 61 l~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~ 139 (526)
T PF01602_consen 61 LGYLYLSLYLHEDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHTTTSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 444455555555544 33335555555555544221110 22334457778889999999999999999
Q ss_pred HhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHhCCC
Q 000149 216 YFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS--QHFLFLLILLVEQLDNP 293 (2037)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~--e~~~~~l~~Li~~L~~~ 293 (2037)
.+.+. . ++--... +++.+.+.+ .-+|+.+.-..+..+.+| + ..-+. .++...+-.|..-++.+
T Consensus 140 ~i~~~---------~--p~~~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~ 204 (526)
T PF01602_consen 140 KIYRK---------D--PDLVEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDP 204 (526)
T ss_dssp HHHHH---------C--HCCHHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCC
T ss_pred HHhcc---------C--HHHHHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhccccc
Confidence 97621 1 1122223 788999977 445588999998888887 1 11111 33333333344555899
Q ss_pred CcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHH-HHHHHHHHhCCChHHHHHhhcccccch
Q 000149 294 HVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM-VREFAEAAFGVETEELVKKMIPAVLPK 372 (2037)
Q Consensus 294 n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~e~ll~~~~~~fL~~~~~~~LP~ 372 (2037)
++.+...+.+-+..++......+. . ..+.+.+...+.+.... +-+.+..++.+....-
T Consensus 205 ~~~~q~~il~~l~~~~~~~~~~~~------~----~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----------- 263 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYAPMEPEDAD------K----NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----------- 263 (526)
T ss_dssp SHHHHHHHHHHHTTSTSSSHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----------
T ss_pred chHHHHHHHHHHHhcccCChhhhh------H----HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----------
Confidence 999888888777766433322110 0 12223333222221111 1121111111111000
Q ss_pred hhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHH
Q 000149 373 LVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2037)
Q Consensus 373 LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~el 452 (2037)
+...+...|..++...+++--.-+|..+..........++. +.+....
T Consensus 264 -----------------------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~---~~~~~~~ 311 (526)
T PF01602_consen 264 -----------------------------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFN---QSLILFF 311 (526)
T ss_dssp -----------------------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGT---HHHHHHH
T ss_pred -----------------------------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhh---hhhhhhe
Confidence 11222223333333333332222333333332223222221 1111111
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS 532 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~ 532 (2037)
...+ .|...++. .-+.+..++. +.. +--|+..+..-+.+..+...|+.++.+|+.+.....+
T Consensus 312 --l~~~--~d~~Ir~~--~l~lL~~l~~----~~n--------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 312 --LLYD--DDPSIRKK--ALDLLYKLAN----ESN--------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp --HHCS--SSHHHHHH--HHHHHHHH------HHH--------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred --ecCC--CChhHHHH--HHHHHhhccc----ccc--------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 1112 22222211 1111211111 111 1112222222222233556788899999998887744
Q ss_pred ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHH
Q 000149 533 HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILED 612 (2037)
Q Consensus 533 ~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~ 612 (2037)
....+..-++..|..+ + ....-.+|..+...+... |+.- ..++..++.+++... . ..+....=+
T Consensus 374 ~~~~~v~~l~~ll~~~----~-~~~~~~~~~~i~~ll~~~-~~~~----~~~l~~L~~~l~~~~-~-----~~~~~~~~w 437 (526)
T PF01602_consen 374 DAEWYVDTLLKLLEIS----G-DYVSNEIINVIRDLLSNN-PELR----EKILKKLIELLEDIS-S-----PEALAAAIW 437 (526)
T ss_dssp SHHHHHHHHHHHHHCT----G-GGCHCHHHHHHHHHHHHS-TTTH----HHHHHHHHHHHTSSS-S-----HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhc----c-ccccchHHHHHHHHhhcC-hhhh----HHHHHHHHHHHHHhh-H-----HHHHHHHHh
Confidence 4444444444444432 1 234557788877776542 2222 223334444443221 1 234555556
Q ss_pred HHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 000149 613 LVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTA 692 (2037)
Q Consensus 613 Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~ 692 (2037)
++-|..+...+ .. ...+.++.+.++...|+..|+.+.++.+-++.....+
T Consensus 438 ilGEy~~~~~~-------------------------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~---- 487 (526)
T PF01602_consen 438 ILGEYGELIEN-------------------------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE---- 487 (526)
T ss_dssp HHHHHCHHHTT-------------------------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS----
T ss_pred hhcccCCcccc-------------------------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc----
Confidence 66665554432 11 3456677788888888999999999999988754431
Q ss_pred HHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 693 LINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 693 ~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
. .....++..++..+...+ .+.+++..|-++++++
T Consensus 488 -------~--~~~~~i~~~~~~~~~~~s---~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 488 -------N--EVQNEILQFLLSLATEDS---SDPEVRDRAREYLRLL 522 (526)
T ss_dssp -------T--THHHHHHHHHHCHHHHS----SSHHHHHHHHHHHHHH
T ss_pred -------h--hhHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHH
Confidence 0 123355566666565322 2368999999998876
No 61
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=4.5 Score=52.88 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.2
Q ss_pred HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh-
Q 000149 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA- 271 (2037)
Q Consensus 193 ~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~- 271 (2037)
+||..+ .|+++.+|-.-|-.|.-++ +-++..++ -..|..++..+. ..|....|-.+-++..||.-
T Consensus 94 ~~l~~l-gd~~~lIr~tvGivITTI~---------s~~~~~~w---pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 94 ECLHGL-GDASPLIRATVGIVITTIA---------STGGLQHW---PELLPQLCELLD-SPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHhhc-cCchHHHHhhhhheeeeee---------cccccccc---hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhh
Confidence 487767 9999999988877666644 33322333 556777887444 45555788888887777632
Q ss_pred -h----cccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 272 -V----DVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 272 -~----~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
. +...+-+++.+=+++++..|++|.+|+-|..=+...
T Consensus 160 a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 160 AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 2 122244566677899999999999999998766554
No 62
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.40 E-value=0.006 Score=67.85 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc-------c----c------ccc--ccChhhHHH
Q 000149 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ-------R----F------KIE--CSDDDLIFE 767 (2037)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~-------~----~------~~~--~~~~~F~~~ 767 (2037)
+|+..|++..+.. . +..+++.+.+|||.||||||.++...... + . ... -..++|...
T Consensus 10 ~LL~~L~~iLk~e-~---s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 10 ELLDILLNILKTE-Q---SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHHhC-C---CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 5666666655443 2 26899999999999999999999732110 0 0 011 145667666
Q ss_pred HHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCC
Q 000149 768 LIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGC 802 (2037)
Q Consensus 768 ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~g~ 802 (2037)
..-+.|.+.+.-.+-+..+..+..||-.+++..|+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~ 120 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL 120 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 66677888888888888777666666666665544
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.34 E-value=2.3 Score=54.58 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
...++.+|+...+.|..+.|...+.++...+ ++.+..-++++ ..|+..+|++.+++.++..|.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-------------- 326 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-------------- 326 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC--------------
Confidence 5578999999999999999999999987643 34444556655 348889999999988764321
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+..++.+|+-....++ .+++.+.|.++.+..|+- ..|..+|+-+++.
T Consensus 327 ----------------------~~~l~l~lgrl~~~~~~--~~~A~~~le~al~~~P~~-~~~~~La~~~~~~ 374 (398)
T PRK10747 327 ----------------------TPLLWSTLGQLLMKHGE--WQEASLAFRAALKQRPDA-YDYAWLADALDRL 374 (398)
T ss_pred ----------------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Confidence 13356677776655554 788999999999999975 4466777766433
No 64
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=7.5 Score=54.10 Aligned_cols=280 Identities=17% Similarity=0.224 Sum_probs=162.2
Q ss_pred CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhc---c---ccccchHHHHHHHHHHhcCCCcchhh
Q 000149 485 NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIG---S---HLTTYVPKILVLLMHAINKESLQCEG 558 (2037)
Q Consensus 485 ~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g---~---~v~~~~pqI~a~L~saL~~~~L~~~~ 558 (2037)
++.++.=+++|+.-+..-|+.+|..+++. .|.-++++++.++...- . +....+|.++-.|+..+...+ ...+
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-~~~a 223 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-DDAA 223 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-hHHH
Confidence 34556667889888999999998776555 88999999999999983 2 566778999999999997544 2345
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHh---hcccC-------
Q 000149 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQ---HIHEF------- 628 (2037)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~---~i~~l------- 628 (2037)
.++...|+..+. .+|.-+++++++|+..-+....... -...+|..|.+++-.+..--..+.+. +++.|
T Consensus 224 ~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 224 KSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKE-LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 666666666654 3677899999999998887774332 23356777877776665442222221 12222
Q ss_pred -CCCCCchhhHHH----------H-----HHHHHh----cCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000149 629 -PLLPSIAALTEV----------N-----KAIQEA----RGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2037)
Q Consensus 629 -p~Lp~ip~L~~v----------~-----~~l~~~----r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2037)
+.+.+-++..+- . ..+... .|..=+---++.+-..+++++..-|.-||-.|..
T Consensus 302 mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~------- 374 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSV------- 374 (1075)
T ss_pred cCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------
Confidence 111111111000 0 000000 0000011123333444444444444444444333
Q ss_pred HHHHHHhccCCCC--chhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHH
Q 000149 689 DVTALINGEACSD--LDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIF 766 (2037)
Q Consensus 689 ~l~~~~~~e~~~~--~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~F~~ 766 (2037)
.+|+..+ .+.+.+++.-.+.+..+ .+++++.+|--|+|.+-. - +.-+-..+..
T Consensus 375 ------i~EGc~~~m~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~st----d----------l~p~iqk~~~ 429 (1075)
T KOG2171|consen 375 ------IAEGCSDVMIGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMST----D----------LQPEIQKKHH 429 (1075)
T ss_pred ------HHcccHHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhh----h----------hcHHHHHHHH
Confidence 3444432 11234444444444443 347999999999997521 0 1111111223
Q ss_pred HHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 767 ELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 767 ~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
..+-..|+...-++.+++.|-.+|-|+=+++..|
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 3333446667777899999999999999998875
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.17 E-value=4.3 Score=60.49 Aligned_cols=464 Identities=15% Similarity=0.118 Sum_probs=239.4
Q ss_pred ccchhHHHHHHHHHHHccCCchh-hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccccccccchh
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDV-LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLDENASSRSN 237 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~-~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 237 (2037)
..++|...+.+|.-++.|+.... .+.. ..-+.+|-.+|.+++..+|..+++.++.+.. +. .-..+..
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--------- 486 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--------- 486 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 46899999999999998866331 1111 1123455556689999999999999987540 00 0000111
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
...+-.+-+.+. ..|+.++|-..-+++-|.. ...+.. .+. -++-.|++.|.+.++-++..|..-|.++++.-..
T Consensus 487 -aGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 487 -AGGIPPLVQLLE-TGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred -CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 122344455444 4567799998888888843 111111 111 2355689999999999999998888888554221
Q ss_pred cCcccccchhhhhhhhhhHHHHHhhc-CchHHHHHHHH---HHhCCCh-HHHHHhh--cccccchhhhccccChh-----
Q 000149 315 GGCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAE---AAFGVET-EELVKKM--IPAVLPKLVVSQQDNDQ----- 382 (2037)
Q Consensus 315 ~~~~l~~~~~~~~~~~l~~~~~~~l~-~~p~~~~~~~e---~ll~~~~-~~fL~~~--~~~~LP~LVl~~~~~~~----- 382 (2037)
. .+ .+++.-|. ..|.+.....+ .++.+.. +++.... ..-.+|.|+---+....
T Consensus 564 ~--------------~I-~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 564 A--------------TI-SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred h--------------HH-HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 1 11 11221121 22222222111 0122222 2222221 23567777764322211
Q ss_pred HHHHHHHHHHHcCCCchhHHh-hhHHHHHHHHhcccc--HHHHHHHHHHHHhhcCCC-hHHHHH-hhhHHHHHHHHHhhc
Q 000149 383 AVNIINELAKCLNTDMVPLIV-TWIPKVLAFALHQAD--ERRLLSALEFYCIQTGSD-NQEIFA-AALPALLDELICFVD 457 (2037)
Q Consensus 383 ~~~~i~~ia~~~~~~~~~l~~-~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~l~ell~~~~ 457 (2037)
+..+|..|+...+.-...++. +-++.++.+|-.... ..+.+.+|..+......+ ...++. .++|.++ +|+ .
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~-~LL---~ 704 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI-KLA---K 704 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH-HHH---h
Confidence 335555665533333444443 345555554444333 345667776666422211 123344 3556655 454 3
Q ss_pred CCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-------
Q 000149 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI------- 530 (2037)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~------- 530 (2037)
..|.+. +..+...++.....++.-..+.+...+..+..+ +.+....-|+.|-.+|..|.+-.
T Consensus 705 ~~d~~v-------~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~l----Lr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~ 773 (2102)
T PLN03200 705 SSSIEV-------AEQAVCALANLLSDPEVAAEALAEDIILPLTRV----LREGTLEGKRNAARALAQLLKHFPVDDVLK 773 (2102)
T ss_pred CCChHH-------HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHH----HHhCChHHHHHHHHHHHHHHhCCChhHHHH
Confidence 333332 234555666666777777777776665555544 34444556777777766654311
Q ss_pred cc-ccccchHHHHHHHHHHhcCCCcchh----hhHH-----------------HHHHHHHhccCCCcchhhHHHHHHHHh
Q 000149 531 GS-HLTTYVPKILVLLMHAINKESLQCE----GLSV-----------------LHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2037)
Q Consensus 531 g~-~v~~~~pqI~a~L~saL~~~~L~~~----~l~~-----------------W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2037)
+. +-.....-++.+|.+. ++... ++.+ |..|+.. |+.++|++.-
T Consensus 774 ~~~~~~g~v~~l~~~L~~~----~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~-----p~~l~~l~~~----- 839 (2102)
T PLN03200 774 DSVQCRGTVLALVDLLNST----DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEV-----PSSLEPLVRC----- 839 (2102)
T ss_pred HHHHHhCcHHHHHHHHhcC----CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhc-----cCchHHHHHH-----
Confidence 11 1122333333333322 22222 2233 4444432 3455544332
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH-hhccCC
Q 000149 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV-DGLNHE 667 (2037)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~-~rl~~e 667 (2037)
+. +.....+++|.+||..|-.+....|++.+..-+- .| ..++ |.+++.
T Consensus 840 ---l~---~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~~~~~~ 888 (2102)
T PLN03200 840 ---LA---EGHPLVQDKAIEILSRLCRDQPVVLGDLIANASK--CI-----------------------SSLADRIINSS 888 (2102)
T ss_pred ---HH---cCChHHHHHHHHHHHHHhccChhHHHHHHhcccc--hH-----------------------HHHHHHHhhcC
Confidence 21 2223457899999999988888888877644321 11 1222 334566
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhh
Q 000149 668 NLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCA 717 (2037)
Q Consensus 668 n~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~ 717 (2037)
++.|+.-+-.-|----+.|+....+.. .+. .....||.+|++-..
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 889 SLEVKIGGTALLICAAKEHRQLVMEAL-DES----GYLKLLIQALVDMLK 933 (2102)
T ss_pred CceEEecchhhhhhhhhhhHHHHHHHH-Hhh----ccHHHHHHHHHHHHh
Confidence 777777665555555555544322221 111 356678888877654
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=96.06 E-value=11 Score=52.07 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
|++.+.+-+.+++-.. .-+++--|+--|-+..+-.++..++ -+-.+..=+.|++..+|-.|=|++.++-.
T Consensus 65 DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~---- 134 (746)
T PTZ00429 65 DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV---- 134 (746)
T ss_pred CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----
Confidence 4444444444433222 3444444555555554432222211 12344444589999999999998888541
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNA 301 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a 301 (2037)
...-+.++.-+++.+.+ ++|-|.=|...+++.|.. ...|++. -.+-.|.+.|..+|+.|.+.|
T Consensus 135 -----------~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~LL~D~dp~Vv~nA 199 (746)
T PTZ00429 135 -----------SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVELLNDNNPVVASNA 199 (746)
T ss_pred -----------HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHHHhcCCCccHHHHH
Confidence 22235566677887765 668899999999999854 2333321 012346677899999999999
Q ss_pred HHHHHHHHhhh
Q 000149 302 SRLIRKSCFFH 312 (2037)
Q Consensus 302 ~~~i~~la~~~ 312 (2037)
..-+..++...
T Consensus 200 l~aL~eI~~~~ 210 (746)
T PTZ00429 200 AAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHHhC
Confidence 99888886543
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.80 E-value=4.2 Score=52.30 Aligned_cols=290 Identities=8% Similarity=-0.033 Sum_probs=152.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
...+.+..-..|+|+.|.....++....|+.....+-.-+...+.|+++....+.+......|+.........++.....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 34556667788999999999888888777766555444556677788887776666554444543222222346667777
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK 1276 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~k 1276 (2037)
|+|+.-.+.+......+ +.+.....-+ +...+..+|.++..+.+...++.- ......+. .
T Consensus 167 ~~~~~Al~~l~~l~~~~------P~~~~~l~ll--~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~-------~ 226 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA------PRHKEVLKLA--EEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFA-------D 226 (409)
T ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHH-------H
Confidence 88875555444332210 0111111112 233345566655555544433321 00001110 0
Q ss_pred hhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHH
Q 000149 1277 LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYA 1356 (2037)
Q Consensus 1277 Lh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~A 1356 (2037)
++.......+.+.. .......+.+.|.. ++-- .......++..|
T Consensus 227 l~~~a~~~~l~~~~------------~~~~~~~L~~~~~~-~p~~-----------------------~~~~~~l~~~~a 270 (409)
T TIGR00540 227 LEQKAEIGLLDEAM------------ADEGIDGLLNWWKN-QPRH-----------------------RRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHHHHHH------------HhcCHHHHHHHHHH-CCHH-----------------------HhCCHHHHHHHH
Confidence 01000000000000 00112233334432 1100 001245789999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChH-----HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1357 KLCRLAGHYETATRAILEAQASGAPNV-----HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1357 klARKag~~~~A~~aLl~a~~~~~p~~-----~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
+...+.|.++.|...+.++.+..+++. .+..+-. -..++...+++.++..++..|
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l~~~~~~~~~~~~e~~lk~~p------------------- 330 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-LKPEDNEKLEKLIEKQAKNVD------------------- 330 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-cCCCChHHHHHHHHHHHHhCC-------------------
Confidence 999999999999999999987544332 2222211 224566778888887765322
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhccchHHHHHHHHhhhHHH
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYS--RVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~--~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
. ++. +.....+|+-....++ .+++.++|+ .+.+.+|+-+- +.++|..+.+.
T Consensus 331 ~--------------~~~-~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 331 D--------------KPK-CCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred C--------------Chh-HHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 1 111 1334455544433333 677888888 57788888776 44787776544
No 68
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.44 E-value=3.2 Score=57.23 Aligned_cols=333 Identities=12% Similarity=0.048 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCcc--------------------------ccCCC-CChhhHHHHH
Q 000149 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAA--------------------------EKSGT-FEDEDVSFLM 1093 (2037)
Q Consensus 1041 Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~--------------------------~~~~~-~~~~~~~~L~ 1093 (2037)
+.+..+..+-.++|.+..|+..++.-.+... .|+. .+.|. .....+..|+
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 3456677777777888888888776543211 1110 00000 0123467899
Q ss_pred HHHhhCCChHHHHHHHHHhccC---ChhHHHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHH
Q 000149 1094 EIYSFLDEPDGLSGLARLHKSL---SLQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMV 1168 (2037)
Q Consensus 1094 ~IYa~LdEpDg~~Gi~~~r~~~---~l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll 1168 (2037)
+.|...++.|.+..+....... +-+.-+-.|-+.|++++|+..|+...+. .|+.. ....+++++.++|.++...
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHH
Confidence 9999999999999887643322 2334566788999999999999876543 35444 3457888888889988655
Q ss_pred HHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHH
Q 000149 1169 THVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248 (2037)
Q Consensus 1169 ~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I 1248 (2037)
.....+...........+..-+.+-.+.|+++...+.+..+... ...+|+. +..++ .++++.+++.+..
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~t~n~-lI~~y--~~~G~~~~A~~lf 414 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------NLISWNA-LIAGY--GNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHcCCHHHHHHHH
Confidence 44433322211111222334566777889999888887765431 1234543 22222 2456665555555
Q ss_pred HHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000149 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2037)
Q Consensus 1249 ~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2037)
+++... .+.+. ..+|...-....+.-.+.|-.++.+.+... .+..++......+.+.+-+ - ..+..-
T Consensus 415 ~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g~~p~~~~y~~li~~l~r-~----G~~~eA 481 (697)
T PLN03081 415 ERMIAE---GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYACMIELLGR-E----GLLDEA 481 (697)
T ss_pred HHHHHh---CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCccchHhHHHHHHh-c----CCHHHH
Confidence 544322 22111 112332222222222233322222222110 0000111111112211111 0 001100
Q ss_pred hhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHH
Q 000149 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2037)
Q Consensus 1329 e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2037)
..+ +++. .... ...+|-.....++++|.++.|..+..++...++. ....--+.++-..|+.++|.+.++.
T Consensus 482 ~~~--~~~~-----~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 482 YAM--IRRA-----PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHH--HHHC-----CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 111 1111 1111 2457999999999999999999998888766543 3455567888899999999998887
Q ss_pred Hhh
Q 000149 1407 NLL 1409 (2037)
Q Consensus 1407 ~i~ 1409 (2037)
.-+
T Consensus 554 m~~ 556 (697)
T PLN03081 554 LKR 556 (697)
T ss_pred HHH
Confidence 654
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=12 Score=49.23 Aligned_cols=394 Identities=14% Similarity=0.158 Sum_probs=187.3
Q ss_pred hhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000149 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2037)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2037)
--++++.|...|-...-..++=+++....-.-.|+-.+ +.++..+-.+-++-+ .-|.+.||.|+..-++..+
T Consensus 53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~-~tps~~~q~~~~~~l~~~~------ 124 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL-DTPSKSVQRAVSTCLPPLV------ 124 (569)
T ss_pred HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc-CCCcHHHHHHHHHHhhhHH------
Confidence 34577777777766666666666665555555666533 222222222444545 8899999999999888864
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
-..+ ......++..+-+.++.++-..-..---.-.|- .++-.+..+-=.-.+.-|-+..+..++..+.-+--.
T Consensus 125 ~~~~------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~-v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~ 197 (569)
T KOG1242|consen 125 VLSK------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGL-VNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALL 197 (569)
T ss_pred HHhh------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHH-HcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHH
Confidence 1111 112233444444444422211111111111111 111111111111234445555565555554421111
Q ss_pred HHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcc--------cccchhhhc
Q 000149 305 IRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIP--------AVLPKLVVS 376 (2037)
Q Consensus 305 i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~--------~~LP~LVl~ 376 (2037)
....+..+.-. ...++.. .+++-+..++-.+-..+++-|.. -+...++..-+ +.|+-+.-.
T Consensus 198 a~~~~~~~Lg~---~~EPyiv----~~lp~il~~~~d~~~~Vr~Aa~~----a~kai~~~~~~~aVK~llpsll~~l~~~ 266 (569)
T KOG1242|consen 198 AFEAAQGNLGP---PFEPYIV----PILPSILTNFGDKINKVREAAVE----AAKAIMRCLSAYAVKLLLPSLLGSLLEA 266 (569)
T ss_pred HHHHHHHhcCC---CCCchHH----hhHHHHHHHhhccchhhhHHHHH----HHHHHHHhcCcchhhHhhhhhHHHHHHH
Confidence 11111122122 2345554 34445555554444444443321 12333333322 223333222
Q ss_pred c-ccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccH---HHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHH
Q 000149 377 Q-QDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2037)
Q Consensus 377 ~-~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~el 452 (2037)
+ +....+++.+.-+|.+..+-+..++-+=.| .++-.+.-..+ +..-.||.-+... ++..+ +....|.+++-
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP-~lsevl~DT~~evr~a~~~~l~~~~sv--idN~d-I~~~ip~Lld~- 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIP-VLSEVLWDTKPEVRKAGIETLLKFGSV--IDNPD-IQKIIPTLLDA- 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhH-HHHHHHccCCHHHHHHHHHHHHHHHHh--hccHH-HHHHHHHHHHH-
Confidence 1 111123344444444333333222222222 22222222112 1222233222211 12222 22244455442
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-c
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI-G 531 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~-g 531 (2037)
+ +|+. ......++.+. ....-.|..+-=|.||.-+=..=++..+...||++..-++.|-++. -
T Consensus 342 ---l--~dp~------~~~~e~~~~L~-----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 342 ---L--ADPS------CYTPECLDSLG-----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred ---h--cCcc------cchHHHHHhhc-----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 2 2222 12233444332 2233445555556666654322233345677899999999999999 3
Q ss_pred c-ccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000149 532 S-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2037)
Q Consensus 532 ~-~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2037)
+ -+..|+|+++=.|+..+. .|+.|..+.++...+++.+.++.-.++.|.+....
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhh
Confidence 4 799999999999998875 58999999999999999887654345555555443
No 70
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.12 E-value=10 Score=50.18 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=47.8
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 250 TAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.+.+|+.++=..-+.+..+ ...+.|+..++.=.|...|.++|+.+|+.|.+-+-++
T Consensus 51 ~~s~~~~~Krl~yl~l~~~---~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 51 ISSKDLELKRLGYLYLSLY---LHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp CSSSSHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 3489999999999999987 3457777767777799999999999999999999998
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.11 E-value=23 Score=50.99 Aligned_cols=327 Identities=11% Similarity=-0.002 Sum_probs=185.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc----cCC--
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~----~~~-- 1116 (2037)
+..|..+..+++.+..|+..++.-.+.. ..| ....+..|+..|+..++.|.+..+..... .++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~G---l~p--------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAG---LKA--------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3467778889999999999988754321 111 23578999999999999999999876432 122
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc----chhhhhhHhHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR----IPQYKKTWCMQG 1189 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~----~p~~~~~l~~~~ 1189 (2037)
...-|-.|-+.|++++|...|+...+. .|+. .....+++++.+.|+++......+.+... .|+ ...+..-
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD--~vTynaL 585 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD--HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc--HHHHHHH
Confidence 223455789999999999999987654 3543 34467889999999999877766665431 232 1223345
Q ss_pred HHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHh
Q 000149 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r 1269 (2037)
+.+.-+.|+++...+....+...|. .+....|+ .+..++ .+.++.+++.+....+... .+.+. ..+|..
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi----~p~~~tyn-sLI~ay--~k~G~~deAl~lf~eM~~~---Gv~PD-~~Tyns 654 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNI----KGTPEVYT-IAVNSC--SQKGDWDFALSIYDDMKKK---GVKPD-EVFFSA 654 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCChHHHH-HHHHHH--HhcCCHHHHHHHHHHHHHc---CCCCC-HHHHHH
Confidence 6677789999998888877655331 11112232 122222 2345555555444443322 11111 123443
Q ss_pred hhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhH
Q 000149 1270 AYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2037)
Q Consensus 1270 ~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~ 1349 (2037)
..+...+.-.+.|..++...+.. .....+......+....-. ...+.......+. ++. .+...+ .
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k-----~G~~pd~~tynsLI~ay~k-~G~~eeA~~lf~e---M~~-----~g~~Pd-v 719 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARK-----QGIKLGTVSYSSLMGACSN-AKNWKKALELYED---IKS-----IKLRPT-V 719 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHH---HHH-----cCCCCC-H
Confidence 33443444333333333332211 1111122222223222211 0000000111111 111 112222 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChH-H-HHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG-APNV-H-MEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~-~-iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+|-.......++|+++.|...+.++...+ .|+. . ---...+-+.|+.++|.+.++..++
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999877665 3432 1 1223456677899999999988865
No 72
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=7 Score=52.06 Aligned_cols=356 Identities=13% Similarity=0.113 Sum_probs=194.3
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHH----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--
Q 000149 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL----LDVIKLAFTAADDPLILETLLESTAELMMAV-- 272 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-- 272 (2037)
+.+||..=|+|+..+..+.+ ++.+.-+..++ +--|-.++. -+.-.+++|.=-|+|+|....
T Consensus 373 i~~pdwr~reaavmAFGSIl------------~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSIL------------EGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cCCcchhhhhHHHHHHHhhh------------cCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchh
Confidence 48999999999999999987 22222222221 112222222 233457889999999996433
Q ss_pred -cccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC---chH----
Q 000149 273 -DVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPI---- 344 (2037)
Q Consensus 273 -~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---~p~---- 344 (2037)
.++.+..-..+..|++-|. .+|-+..++..-+.++|++.-+.+- +.+-+.+.+..|++++..|+. |+.
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~---s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAV---SNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhcc---CCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 2344555555556777764 5599999999999999988766432 122333445678888887772 222
Q ss_pred -----HHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHH----HHHHHcCC-CchhHHhhhHHHHHHHHh
Q 000149 345 -----MVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIIN----ELAKCLNT-DMVPLIVTWIPKVLAFAL 414 (2037)
Q Consensus 345 -----~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~----~ia~~~~~-~~~~l~~~~~~~Ila~ll 414 (2037)
.=+.+.| +...++++-....+..++=-+. |-+ ++|. ..+..-+. +++.++.+.+..|+.-+=
T Consensus 516 NLR~AAYeALmE-lIk~st~~vy~~v~~~~l~il~---kl~----q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 516 NLRSAAYEALME-LIKNSTDDVYPMVQKLTLVILE---KLD----QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred hHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH---HHH----HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1233444 5555655544433322221111 111 1222 11111111 256666677777766554
Q ss_pred cc--ccHHHHHHHH-HHHHhhcCC--ChHHH--------------HHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHH
Q 000149 415 HQ--ADERRLLSAL-EFYCIQTGS--DNQEI--------------FAAALPALLDELICFVDGGDSDEINERLNRVPRVI 475 (2037)
Q Consensus 415 ~~--~~~~~~~~~l-~~~~~~~~~--~~~~~--------------~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~ 475 (2037)
.. +..+.++..+ ..+.+ +++ -..+. |....|.+.-=|++ |..+.+|.--.. -+.
T Consensus 588 ~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~--gL~n~~e~qVc~----~aV 660 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM--GLSNFQEYQVCA----AAV 660 (859)
T ss_pred ccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HhhcchHHHHHH----HHH
Confidence 41 1233343332 22222 111 11222 22222333322222 222222211000 011
Q ss_pred HHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHh--cC-
Q 000149 476 RKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI--NK- 551 (2037)
Q Consensus 476 ~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL--~~- 551 (2037)
--++.+ ...+.+=+.++-=++|+.+-.++.++. .-..|=..|-.+|++---+|.+--+++--||.+||.|= +-
T Consensus 661 glVgdl---~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d 737 (859)
T KOG1241|consen 661 GLVGDL---ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD 737 (859)
T ss_pred HHHHHH---HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 111110 123445556667777887766665432 12244567888999888889999999999999999775 21
Q ss_pred ----------CCcchhhhHHHHHHHHHhcc-CCCcchhhHHHHHHHHhh
Q 000149 552 ----------ESLQCEGLSVLHFFIEQLSR-VSPSSTKHVISQVFAALI 589 (2037)
Q Consensus 552 ----------~~L~~~~l~~W~~fv~~L~~-~~~~~l~~ll~~i~~~li 589 (2037)
++||+.++.+..-.++-|.. .++..+.|++..||..+=
T Consensus 738 ~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 738 PADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 34899999999998888862 123556688887776553
No 73
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.72 E-value=29 Score=48.66 Aligned_cols=124 Identities=12% Similarity=0.122 Sum_probs=96.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC-C---hhHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL-S---LQDE 1120 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~-~---l~~q 1120 (2037)
.-+....+-|.|..|+-.+++..+..+.+ ...+..|..+|..++..+.+.-.+..-..+ + ....
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------------~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQ------------SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccc------------hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 45667889999999999999987653211 112338889999999999988887643221 1 1112
Q ss_pred --HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1121 --LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1121 --il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+..+...|+|++|.+.|+++++.+|++.+...|+...+.+.++.+..+..++.+....|.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 336788899999999999999999999988889988889999999999988887766665
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.66 E-value=0.08 Score=49.48 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.3
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+.|+|++|...|+.+++..|++.+...++-+|+.+.|+++......+.+....|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6799999999999999999999999999999999999999988888877766665
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.51 E-value=24 Score=46.91 Aligned_cols=335 Identities=14% Similarity=0.196 Sum_probs=176.9
Q ss_pred cccCCChhhHHHHHHHhhcc-cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 139 LNFHSDFSFLLNIYFEFLYD-ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
|-....++.+-+ |.|.++. ..|-+-+=-+++....|.....+.++--- ...++||+.+|.|..+.||.-.+-++++.
T Consensus 503 vasalgip~llp-fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl-~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 503 VASALGIPALLP-FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHL-KPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HHHHhCcHHHHH-HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhh-HHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 445667788888 8888888 44777777788888777777666654332 45789999999999999999998888875
Q ss_pred hhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcch
Q 000149 218 LQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTV 297 (2037)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~ 297 (2037)
.++.. .-+.. -||- |..-| |..| +.. +|.. +-+|..-+.||-+-.-..
T Consensus 581 aeaa~----------Pygie---~fDs------------VlkpL---wkgi--r~h-rgk~-laafLkAigyliplmd~e 628 (1172)
T KOG0213|consen 581 AEAAT----------PYGIE---QFDS------------VLKPL---WKGI--RQH-RGKE-LAAFLKAIGYLIPLMDAE 628 (1172)
T ss_pred HHhcC----------CcchH---HHHH------------HHHHH---HHHH--HHc-cChH-HHHHHHHHhhccccccHH
Confidence 42211 11111 1111 11111 2232 221 2222 246777777777665555
Q ss_pred HHHHHH-HHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhc
Q 000149 298 RMNASR-LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS 376 (2037)
Q Consensus 298 ~~~a~~-~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~ 376 (2037)
.+.-|+ |+.-+-..-+ -++.. ++=..+.| .+++.| +.-|++. ++++.- +||.....
T Consensus 629 ya~yyTrevmlil~rEf-------~sPDe----emkkivLK-------Vv~qcc-~t~Gv~~-~y~r~d---ilp~ff~~ 685 (1172)
T KOG0213|consen 629 YASYYTREVMLILIREF-------GSPDE----EMKKIVLK-------VVKQCC-ATDGVEP-AYIRFD---ILPEFFFS 685 (1172)
T ss_pred HHHHhHHHHHHHHHHhh-------CCChH----HHHHHHHH-------HHHHHh-cccCCCH-HHHhhh---hhHHHHhh
Confidence 555554 3333311111 13332 22233332 244544 4555443 344443 45555433
Q ss_pred ---------cccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcCCChHHHHHhhhHH
Q 000149 377 ---------QQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPA 447 (2037)
Q Consensus 377 ---------~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (2037)
++...+.+.+-.+||...+.+ +.+...+.-+..+ .+=++.....
T Consensus 686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----------------------~~v~R~v~~lkde-----~e~yrkm~~e 738 (1172)
T KOG0213|consen 686 FWGRRMALDRRNYKQLVDTTVEIAAKVGSD----------------------PIVSRVVLDLKDE-----PEQYRKMVAE 738 (1172)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHhCch----------------------HHHHHHhhhhccc-----cHHHHHHHHH
Confidence 333333344555555544421 1111111111111 0001111111
Q ss_pred HHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhH-HHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000149 448 LLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLR-NHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2037)
Q Consensus 448 ~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~-~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2037)
++...+-.+|..|-|+ =|+ ..+=||+.-|...-.. . .-.+..+|..
T Consensus 739 tv~ri~~~lg~~dide---------------------------rleE~lidgil~Afqeqtt~-----d-~vml~gfg~V 785 (1172)
T KOG0213|consen 739 TVSRIVGRLGAADIDE---------------------------RLEERLIDGILYAFQEQTTE-----D-SVMLLGFGTV 785 (1172)
T ss_pred HHHHHHhccccccccH---------------------------HHHHHHHHHHHHHHHhcccc-----h-hhhhhhHHHH
Confidence 2222223445554443 222 2344777777543211 1 2457889999
Q ss_pred HHHhccccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 527 IEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
..-+|+.+..++||||.+..--|+. +..|..+.+.-..+...|.. |.+ +.++...-++|.-|+.
T Consensus 786 ~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~e--e~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CGE--EKLMGHLGVVLYEYLG 851 (1172)
T ss_pred HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-ccH--HHHHHHhhHHHHHhcC
Confidence 9999999999999999998888864 45677776665555555542 211 2344445555666664
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=6.6 Score=52.57 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=32.1
Q ss_pred hcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 272 VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 272 ~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
-|.+-|++.+..=+|---|-|+|-++=|.|.+-+-++
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI 134 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc
Confidence 4667888877777899999999999999999988887
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.42 E-value=28 Score=50.15 Aligned_cols=305 Identities=10% Similarity=0.071 Sum_probs=170.6
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc----cCC--
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~----~~~-- 1116 (2037)
+..|..+..+||.+..|+..++.-.... ..| ....+..|+..|...++.|.+..+..... .++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P--------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA--------NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4577788889999999999998754321 111 23578999999999999999988876322 122
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHcc----CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM----EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~----~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~E 1191 (2037)
...-+-.+-+.|++++|...|+..... .|+.. ...-++.++.+.|+++.+....+.+...........+...+.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 223455788999999999999987642 45543 345788999999999988777776654422112223445567
Q ss_pred HHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhh
Q 000149 1192 AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAY 1271 (2037)
Q Consensus 1192 AAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y 1271 (2037)
+--+.|+++...+++..+...|. .++......+..++ .+.++.++..+.++.++.. .+. ....+|..-.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv-----~PD~~TynsLI~a~--~k~G~~eeA~~l~~eM~k~---G~~-pd~~tynsLI 691 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGV-----KPDEVFFSALVDVA--GHAGDLDKAFEILQDARKQ---GIK-LGTVSYSSLM 691 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHc---CCC-CCHHHHHHHH
Confidence 77789999999888877765441 12211111122221 2345555555555544432 111 1112344333
Q ss_pred HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHH
Q 000149 1272 PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2037)
Q Consensus 1272 ~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~ 1351 (2037)
....+.-.+.|-.++.+-+.. ....++... |..=+......=...+-+--++. +. ..+...+ ..+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~-----~g~~Pdvvt-------yN~LI~gy~k~G~~eeAlelf~e-M~-~~Gi~Pd-~~T 756 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKS-----IKLRPTVST-------MNALITALCEGNQLPKALEVLSE-MK-RLGLCPN-TIT 756 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHH-HH-HcCCCCC-HHH
Confidence 444444443333333322210 011111111 22221111111011111111111 11 0112112 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHH
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASG-APNVHM 1385 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~~i 1385 (2037)
|-...+.+.+.|.++.|...+.++...+ .|+..+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777788999999999999999987766 455443
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=14 Score=47.37 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=52.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
..--+-.+|.+++|..||..+++..|+......+.--|+..+|.|..+.......+.-.|++.+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA 185 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA 185 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence 33446688999999999999999999977777888999999999998877665555555665543
No 79
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.12 E-value=0.44 Score=61.03 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--
Q 000149 1306 KFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV-- 1383 (2037)
Q Consensus 1306 ~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~-- 1383 (2037)
..+++.+.|++|=+.- .-|..=+..+.. +.+-.+.|+..|-.--..|..+.|..+-.+|.++++..+
T Consensus 118 ~ysn~aN~~kerg~~~--------~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQ--------DALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred HHHHHHHHHHHhchHH--------HHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 3456778899884322 122222233322 234567899999999999999999999999998876432
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH
Q 000149 1384 HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY 1463 (2037)
Q Consensus 1384 ~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~ 1463 (2037)
.-.-..|+-++|.-++|...-.+++..-|.- |-+.--+|--..+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f------------------------------------AiawsnLg~~f~~ 230 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCF------------------------------------AIAWSNLGCVFNA 230 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCce------------------------------------eeeehhcchHHhh
Confidence 2234567888899888888777777642210 1122223333333
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH--HHHhhhhhcccCCcchhh----------hhchHHHHHHH
Q 000149 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV--DARKRQEENSEIGPSEKR----------WWFYVPDVLLF 1531 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~--~~~~~~~~~~~~~~~~~~----------~~~~l~~ai~~ 1531 (2037)
+|. ....++.|.+|++++|.+-.+|+.||.-|..... .+-...+......+.... -+..+..||.+
T Consensus 231 ~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 231 QGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred cch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH
Confidence 333 5567899999999999999999999987765531 110000000000000000 01245568899
Q ss_pred HHHHhccCCcc
Q 000149 1532 YAKGLHRGHKN 1542 (2037)
Q Consensus 1532 Yl~sl~~g~~~ 1542 (2037)
|-+++...+.+
T Consensus 309 Ykral~~~P~F 319 (966)
T KOG4626|consen 309 YKRALELQPNF 319 (966)
T ss_pred HHHHHhcCCCc
Confidence 99998888765
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.11 E-value=3.1 Score=47.21 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=99.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+.+++..+..... ....+..+..+|...+++|........ ...+. ..
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPD------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4678888899999999999997654211 123456788888888998887776542 11111 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccC--CCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQME--PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~--p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.....+...|++++|...|+++++.. +........+-.|+...|+++......+......|.... .......+....
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-SLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-HHHHHHHHHHHc
Confidence 23345678899999999999888643 233344455667788888888777766655544443222 222345667778
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+...+++...
T Consensus 183 ~~~~~A~~~~~~~ 195 (234)
T TIGR02521 183 GQYKDARAYLERY 195 (234)
T ss_pred CCHHHHHHHHHHH
Confidence 8888776666543
No 81
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.97 E-value=42 Score=50.84 Aligned_cols=407 Identities=14% Similarity=0.108 Sum_probs=186.1
Q ss_pred CChhHHHHHHHHHHHHHhhhcccchh-H-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhh
Q 000149 253 DDPLILETLLESTAELMMAVDVHSQH-F-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2037)
Q Consensus 253 ~d~~i~eTll~~~~~i~~~~~~~~e~-~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~ 330 (2037)
.++++++..+.+++-|..+.+.+... . .-++-.|++-|.+++.-++--|..-|.++|.+.....+ .+. +..
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~-iV~------~aG 530 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA-CVE------SAG 530 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH-HHH------HCC
Confidence 56778888888888874322221111 1 12345588888899999999999999999874211100 010 112
Q ss_pred hhHHHHHhhcCchHHHHHHH-HHHhCCChHHHHHhhcccccchhhh--ccccChhHHHHHHHHHHHcC---C-CchhH--
Q 000149 331 LFDYLSVRLASRPIMVREFA-EAAFGVETEELVKKMIPAVLPKLVV--SQQDNDQAVNIINELAKCLN---T-DMVPL-- 401 (2037)
Q Consensus 331 l~~~~~~~l~~~p~~~~~~~-e~ll~~~~~~fL~~~~~~~LP~LVl--~~~~~~~~~~~i~~ia~~~~---~-~~~~l-- 401 (2037)
..+++++-|.+....+++-| .. ...++.....-++|.|+- ...........++.|+..+. . +.+.-
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~A-----L~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~ 605 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKT-----LTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS 605 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHH-----HHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 33455555554322222221 11 111221111122233221 11111111223333333222 1 11111
Q ss_pred HhhhHHHHHHHHhccccHH---HHHHHHHHHHhhcCCChHHH-HHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHH
Q 000149 402 IVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEI-FAAALPALLDELICFVDGGDSDEINERLNRVPRVIRK 477 (2037)
Q Consensus 402 ~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~ 477 (2037)
..+.....|..|+...+++ ....+|.-+.+......+.+ ....+|.++ +|+. .++.+.. +. ...++-.
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV-~LLs---s~~~~v~-ke---AA~AL~n 677 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI-KLLT---NNTEAVA-TQ---SARALAA 677 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHh---cCChHHH-HH---HHHHHHH
Confidence 1234445556666655543 34444433332111111233 335566666 3433 2333222 11 1233333
Q ss_pred HhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCC
Q 000149 478 VSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH----LTTYVPKILVLLMHAINKES 553 (2037)
Q Consensus 478 ~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~----v~~~~pqI~a~L~saL~~~~ 553 (2037)
+.+. ...+....+++...+-.+-. ++..++...+..++.+|+.+.+.-... -..++|.++..|+++ .++
T Consensus 678 L~~~-~~~~q~~~~v~~GaV~pL~~----LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~ 750 (2102)
T PLN03200 678 LSRS-IKENRKVSYAAEDAIKPLIK----LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG--TLE 750 (2102)
T ss_pred HHhC-CCHHHHHHHHHcCCHHHHHH----HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC--ChH
Confidence 3321 11122233343333322222 244556677888999999887754221 235678899999887 455
Q ss_pred cchhhhHHHHHHHHHhccCCCcc-hhhHHH--HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCC
Q 000149 554 LQCEGLSVLHFFIEQLSRVSPSS-TKHVIS--QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPL 630 (2037)
Q Consensus 554 L~~~~l~~W~~fv~~L~~~~~~~-l~~ll~--~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~ 630 (2037)
-++.|..+-..+++.-. .++ +...+. -++..++.+++.-+- ....--.|.+.|.+|...... ..+..
T Consensus 751 ~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~-~~~~~~~al~~l~~l~~~~~~---~~~~~--- 820 (2102)
T PLN03200 751 GKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDL-DSSATSEALEALALLARTKGG---ANFSH--- 820 (2102)
T ss_pred HHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCc-chhhHHHHHHHHHHHHhhccc---CCCCC---
Confidence 67777666666666532 122 211221 133334444443221 111122466666655442110 11111
Q ss_pred CCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHH
Q 000149 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLIS 710 (2037)
Q Consensus 631 Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~ 710 (2037)
|.+. ++-+.-+ -|.-+++.+.|+|+.|-.-|..=|.++.+....-+.+++.+. + .-|+.|-.
T Consensus 821 ----~~~~----~~~e~p~------~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 882 (2102)
T PLN03200 821 ----PPWA----VLAEVPS------SLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANA-S---KCISSLAD 882 (2102)
T ss_pred ----Cchh----hHHhccC------chHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcc-c---chHHHHHH
Confidence 1111 1111111 233445666888998888888888887776655455544432 1 23555554
Q ss_pred HHHH
Q 000149 711 SLLR 714 (2037)
Q Consensus 711 sLL~ 714 (2037)
..+.
T Consensus 883 ~~~~ 886 (2102)
T PLN03200 883 RIIN 886 (2102)
T ss_pred HHhh
Confidence 4443
No 82
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.97 E-value=0.39 Score=58.13 Aligned_cols=254 Identities=16% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHhhCCChHHHHHHHH-H-hccCChhH------HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000149 1091 FLMEIYSFLDEPDGLSGLAR-L-HKSLSLQD------ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2037)
Q Consensus 1091 ~L~~IYa~LdEpDg~~Gi~~-~-r~~~~l~~------qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg 1162 (2037)
.+..+|-..++++....+.. . .+..+.++ ...-.+..|+++.|..+|++.++.++.+......+... ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666666677666666652 1 11101111 11224788999999999999998887766555555555 5678
Q ss_pred ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcc
Q 000149 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHF 1242 (2037)
Q Consensus 1163 q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~ 1242 (2037)
+++.....+.....+.+ ...+....++.+.+.|+|+.+.+.+...... ...+.+..+. +..+-...+.|+..
T Consensus 92 ~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~--~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAPDSARFW--LALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHH--HHHHHHHHHCCHHH
T ss_pred ccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCCCCHHHH--HHHHHHHHHcCCHH
Confidence 88877776665444333 2233445667788999999999988774421 1111222232 33344445566655
Q ss_pred hHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhcc
Q 000149 1243 SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQ 1322 (2037)
Q Consensus 1243 ~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~ 1322 (2037)
+..+.++++-. ..+.+. .-... -++.+.+. ....+.+.+++.|.... .
T Consensus 164 ~A~~~~~~al~-------~~P~~~-~~~~~---l~~~li~~------------------~~~~~~~~~l~~~~~~~---~ 211 (280)
T PF13429_consen 164 KALRDYRKALE-------LDPDDP-DARNA---LAWLLIDM------------------GDYDEAREALKRLLKAA---P 211 (280)
T ss_dssp HHHHHHHHHHH-------H-TT-H-HHHHH---HHHHHCTT------------------CHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHH-------cCCCCH-HHHHH---HHHHHHHC------------------CChHHHHHHHHHHHHHC---c
Confidence 54444433211 111110 00000 01111111 01112334444554432 1
Q ss_pred CChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHH
Q 000149 1323 PSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGA 1400 (2037)
Q Consensus 1323 ~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~--~~p~~~iE~AKLLW~~g~~~~A 1400 (2037)
++ ...|..+|...-.-|+.+.|...+.++... ++|.+...+|.+++..|+.++|
T Consensus 212 ~~------------------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 212 DD------------------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TS------------------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred CH------------------------HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 224777888888999999999999998765 4678899999999999999999
Q ss_pred HHHHHHHhh
Q 000149 1401 IAELQQNLL 1409 (2037)
Q Consensus 1401 i~~L~~~i~ 1409 (2037)
....++++.
T Consensus 268 ~~~~~~~~~ 276 (280)
T PF13429_consen 268 LRLRRQALR 276 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 998887754
No 83
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.49 E-value=2.1 Score=48.68 Aligned_cols=151 Identities=12% Similarity=0.071 Sum_probs=108.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-ccC-------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-KSL------- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~~~------- 1115 (2037)
..++.....-|.|..|+-+++..+..... ....+..+..+|...+++|........- ...
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPN------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 35778888889999999999987764221 1235667888999999999877775421 111
Q ss_pred ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1116 SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1116 ~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
........+...|++++|..+|+++++..|++......+-.++...|+++......+......|.. .............
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 112234567889999999999999999999888777788888999999998777666544333322 2223356677788
Q ss_pred cCChhhHHHHhh
Q 000149 1196 LGRWDLMDEYLS 1207 (2037)
Q Consensus 1196 lg~Wd~lee~l~ 1207 (2037)
.|+++....+..
T Consensus 216 ~~~~~~a~~~~~ 227 (234)
T TIGR02521 216 LGDVAAAQRYGA 227 (234)
T ss_pred HhhHHHHHHHHH
Confidence 888888776644
No 84
>PLN03077 Protein ECB2; Provisional
Probab=93.40 E-value=24 Score=50.08 Aligned_cols=323 Identities=10% Similarity=-0.002 Sum_probs=168.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQD 1119 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~ 1119 (2037)
...+..+..+.|.+..|...++.-.+..- .+ ....+..|++.|...++.|.+..+....... +-+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~--------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGL---IS--------YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCC---Cc--------chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 34555677888999999999887654321 11 2346789999999999999999998743332 3444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
-|..|.+.|++++|+..|+..++.-+.+......+|.++.++|.++.......-+.............--+.+-.+.|++
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 56678999999999999998875433333334567777777777664332221111110000011112234455566776
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+...+....... ...+|+. +..++ .++|+.++..+..++.... .+.+. ..+|........+.-.
T Consensus 541 ~~A~~~f~~~~~---------d~~s~n~-lI~~~--~~~G~~~~A~~lf~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 541 NYAWNQFNSHEK---------DVVSWNI-LLTGY--VAHGKGSMAVELFNRMVES---GVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHHhcCC---------ChhhHHH-HHHHH--HHcCCHHHHHHHHHHHHHc---CCCCC-cccHHHHHHHHhhcCh
Confidence 666555443311 1123432 21121 2455555555444443321 11111 1123222222222222
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
+.|-.++.+.+.. ..+..++......+...+- |..... +-.--++.. ....+ ...|-.....|
T Consensus 605 v~ea~~~f~~M~~----~~gi~P~~~~y~~lv~~l~-r~G~~~------eA~~~~~~m-----~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 605 VTQGLEYFHSMEE----KYSITPNLKHYACVVDLLG-RAGKLT------EAYNFINKM-----PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHHHHHH----HhCCCCchHHHHHHHHHHH-hCCCHH------HHHHHHHHC-----CCCCC-HHHHHHHHHHH
Confidence 2222222221110 0001111111111111111 111000 100001111 11111 45788888889
Q ss_pred HHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1360 RLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
|.+|..+.|..+..++.++. ++...+--+.++-..|+.++|.+..+..-+
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999887776664 345666677888889999999988776644
No 85
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=54 Score=46.34 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHH--hccccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHH-HHH
Q 000149 512 DLSLQKQALKRIEILIEM--IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQ-VFA 586 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l--~g~~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~-i~~ 586 (2037)
+-..|+++-+=|++++.. +-..+....-.|+-.|..+++ ...-+...++||+.+++.++ .+.-.++.. |--
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~----~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS----AEHCDLIPKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHH
Confidence 456788888888988887 222455666777777777765 45678889999999999875 223223332 222
Q ss_pred HhhhhcccCCCCchhhHHHHHHHHHHHH
Q 000149 587 ALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2037)
Q Consensus 587 ~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2037)
.++.+ . +.....++-+.++|.+|-
T Consensus 743 vIL~~-K---e~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 743 VILSL-K---EVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHhc-c---cccHHHHhhHHHHHHHHH
Confidence 33333 2 334455777788887775
No 86
>PLN03077 Protein ECB2; Provisional
Probab=92.95 E-value=59 Score=46.14 Aligned_cols=318 Identities=11% Similarity=-0.020 Sum_probs=169.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQD 1119 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~ 1119 (2037)
+..+..+..+.+....|....+.-.+.. ..| ....+..|...|...++.|.+..+......+ +-+.
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~--------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTG---FAV--------DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC---Ccc--------chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 3455666667777777766665543321 111 2357899999999999999999998754333 3444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
-+-.|-+.|++++|+..|+...+. .|+..+ ...++..+.+.|+++......+-+...........+..-+.+-.+.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 567889999999999999976543 466544 34677888888998866554443322211112223344567778899
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++...+.+..+... ...+|+. +..++ .++++..+..+...+++. .+.+ ...+|........++
T Consensus 439 ~~~~A~~vf~~m~~~--------d~vs~~~-mi~~~--~~~g~~~eA~~lf~~m~~----~~~p-d~~t~~~lL~a~~~~ 502 (857)
T PLN03077 439 CIDKALEVFHNIPEK--------DVISWTS-IIAGL--RLNNRCFEALIFFRQMLL----TLKP-NSVTLIAALSACARI 502 (857)
T ss_pred CHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHCCCHHHHHHHHHHHHh----CCCC-CHhHHHHHHHHHhhh
Confidence 999998888776532 1234543 22222 234444444433333322 1111 122444444444444
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
-.+.+-.++....... +...+..-...+.+.+-. ...++.-.. +|... .....+|-....
T Consensus 503 g~l~~~~~i~~~~~~~-----g~~~~~~~~naLi~~y~k-----~G~~~~A~~-------~f~~~---~~d~~s~n~lI~ 562 (857)
T PLN03077 503 GALMCGKEIHAHVLRT-----GIGFDGFLPNALLDLYVR-----CGRMNYAWN-------QFNSH---EKDVVSWNILLT 562 (857)
T ss_pred chHHHhHHHHHHHHHh-----CCCccceechHHHHHHHH-----cCCHHHHHH-------HHHhc---CCChhhHHHHHH
Confidence 4444444444333210 000011111112222211 011110000 11111 111346777777
Q ss_pred HHHHcCChHHHHHHHHHHhhcC-CChH--HHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1358 LCRLAGHYETATRAILEAQASG-APNV--HMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~-~p~~--~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
..-++|+.+.|.....+....+ .|+. +.--..-+-+.|..++|.+.++...
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7777788888877777766554 2221 1111223445677777777777664
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.86 E-value=0.23 Score=46.14 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
+...+...|+|++|..+|+.+++..|++.+...++=.|+...|+++......+......|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678999999999999999999999999999999999999999988777665554444
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.81 E-value=2.6 Score=48.75 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHH-HcCC--chHHHHHHHHHhhcCCccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLW-STRR--SDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW-~~g~--~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+..+.|...+++....|+++.|..+..+|..+. ++.+....|..++ ..|+ ..+|...++++++..|.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-------- 142 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-------- 142 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--------
Confidence 346789999999999999999999999998875 4567788899775 5566 48999999999874221
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
-.+++.++|.-..+.|+ .++++..|+++.++.|.
T Consensus 143 ----------------------------~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 143 ----------------------------EVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSP 176 (198)
T ss_pred ----------------------------ChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 03356666666555554 77888888888888774
No 89
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.70 E-value=56 Score=45.23 Aligned_cols=321 Identities=11% Similarity=0.005 Sum_probs=170.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQDE 1120 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~q 1120 (2037)
..+..+..+++.+..|...++.-.... ..| ....+..|...|+..++.|.+..+......+ +-+.-
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~--------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSG---FEP--------DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc--------chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 456667777777777666665533321 111 2356889999999999999999997643332 34445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
+-.|-+.|++++|...|+..++..+. +......++++..++|..+.......-+...........+..-+.+--+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 56788999999999999988765432 22333567777777777654322211111000000111223346677788999
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+...+.+..+... ...+|+. +..++ .+.++.+++.+.....+.. .+.+. ..+|...-....++..
T Consensus 276 ~~A~~vf~~m~~~--------~~vt~n~-li~~y--~~~g~~~eA~~lf~~M~~~---g~~pd-~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 276 EDARCVFDGMPEK--------TTVAWNS-MLAGY--ALHGYSEEALCLYYEMRDS---GVSID-QFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHhCCCC--------ChhHHHH-HHHHH--HhCCCHHHHHHHHHHHHHc---CCCCC-HHHHHHHHHHHHhccc
Confidence 9888887766531 1223432 22222 2455655555555444332 12111 1245555555555555
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
+.+-+++...+... +...+..-...+.+..-. ...+..-.. +|.... .....+|-....-.
T Consensus 341 ~~~a~~i~~~m~~~-----g~~~d~~~~~~Li~~y~k-----~G~~~~A~~-------vf~~m~--~~d~~t~n~lI~~y 401 (697)
T PLN03081 341 LEHAKQAHAGLIRT-----GFPLDIVANTALVDLYSK-----WGRMEDARN-------VFDRMP--RKNLISWNALIAGY 401 (697)
T ss_pred hHHHHHHHHHHHHh-----CCCCCeeehHHHHHHHHH-----CCCHHHHHH-------HHHhCC--CCCeeeHHHHHHHH
Confidence 55555544433210 000110011112211111 001110000 111100 01124688888888
Q ss_pred HHcCChHHHHHHHHHHhhcC-CChH--HHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1360 RLAGHYETATRAILEAQASG-APNV--HMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~-~p~~--~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
-++|+.+.|...+.++...+ .|+. +.--..-+-..|..++|.+.++...+
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88888888888888876665 3332 22223334566778888888877654
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.62 E-value=22 Score=47.21 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHhc--cCC----hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000149 1087 EDVSFLMEIYSFLDEPDGLSGLARLHK--SLS----LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2037)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~~----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2037)
+.+=....|+...++++-+--.+.... ..+ .+.++--+.+.|++++|...|...+...|+|...+.|+..|+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 344466688888999887666654211 121 33455667899999999999999999999999999999999843
No 91
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=44 Score=43.67 Aligned_cols=363 Identities=17% Similarity=0.196 Sum_probs=189.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhhccc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~~~~~ 275 (2037)
..+.||-=+=|+|++-.+...+.+-+ . .++-....+++..+..-+.-.-+ ++=+ --|+-+|....|-..+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~-----~---~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLV-----N---NNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIK 77 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-----c---cCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccc
Confidence 34588989999999999888764322 2 23344456777755443443322 2222 4455555543333222
Q ss_pred ch-hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHh
Q 000149 276 SQ-HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAF 354 (2037)
Q Consensus 276 ~e-~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll 354 (2037)
+- ..-.++---+.+++-++.-||--|...+-++||-.+.. +..++ +.||+-+.|-..--.++++.-|| |
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~----v~~~F----n~iFdvL~klsaDsd~~V~~~ae-L- 147 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE----VLVYF----NEIFDVLCKLSADSDQNVRGGAE-L- 147 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC----cccch----HHHHHHHHHHhcCCccccccHHH-H-
Confidence 21 23334444788999999999999999999999988664 34666 68899888888888888888887 2
Q ss_pred CCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc--cHHHHHHHHHHHHhh
Q 000149 355 GVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA--DERRLLSALEFYCIQ 432 (2037)
Q Consensus 355 ~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~--~~~~~~~~l~~~~~~ 432 (2037)
.+.+++-+ |..+.. ---|.+ ..|++.+.+ .... +...+.+=|..+.+-
T Consensus 148 ---LdRLikdI--------Vte~~~----tFsL~~--------~ipLL~eri-------y~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 148 ---LDRLIKDI--------VTESAS----TFSLPE--------FIPLLRERI-------YVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred ---HHHHHHHh--------cccccc----ccCHHH--------HHHHHHHHH-------hcCCchHHHHHHHHHHHHhcC
Confidence 23444433 111100 000000 122222211 1110 122223333323323
Q ss_pred cCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCC
Q 000149 433 TGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED 512 (2037)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~ 512 (2037)
++ -++++ .+|.+++-|...+|+...+.....-.-+.+-++++. +++..+ +| =.+++.+-.. +.++.
T Consensus 198 P~---~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~---s~P~s~-d~-----~~~i~vlv~~-l~ss~ 263 (675)
T KOG0212|consen 198 PD---LEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR---SSPSSM-DY-----DDMINVLVPH-LQSSE 263 (675)
T ss_pred Cc---HHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---cCcccc-Cc-----ccchhhcccc-ccCCc
Confidence 33 33344 678888888778877533221001111222233322 222222 11 1111222111 23455
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHH--HhccCCCcchh--hHHHHHHHHh
Q 000149 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIE--QLSRVSPSSTK--HVISQVFAAL 588 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~--~L~~~~~~~l~--~ll~~i~~~l 588 (2037)
...|..||.=|.+++++-|..+-.+.++|..-+.-.+...+.- ..+--...+. .+.-++.+..+ .=.+.|+..+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~--~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM--SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc--cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 6788999999999999999988888888776665555443321 2222222222 11101111111 1123455566
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000149 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2037)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2037)
..|+....+ .++-.|.+=+..|..+.+..+-.|.+.
T Consensus 342 ~~~l~~~~~---~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 342 TKYLSDDRE---ETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred HHHhhcchH---HHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 677753322 345556666666666655555444433
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.53 E-value=1.3 Score=55.98 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
.+..-|.-|.+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..++.++.-.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46788999999999999999999998775 456788899999999999999999999876211
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
..+.+++.+|.-+...|+ .++++..|.++++++|.....+..+++...++
T Consensus 68 --------------------~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 --------------------SLAKAYLRKGTACMKLEE--YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred --------------------CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 114567777766665554 78899999999999999888777776654444
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.11 E-value=2.6 Score=46.12 Aligned_cols=102 Identities=7% Similarity=0.053 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2037)
Q Consensus 1381 p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akw 1460 (2037)
|+.....+..+...|+.++|+..++.++...| . .+.++..+|.-
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------------------~-----------------~~~a~~~lg~~ 67 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-------------------W-----------------SWRAHIALAGT 67 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C-----------------cHHHHHHHHHH
Confidence 44455678888999999999998888765211 0 13344555554
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCC
Q 000149 1461 IHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2037)
Q Consensus 1461 l~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~ 1540 (2037)
+...|+ .++++..|.+|++++|.+..+|+.+|..+...- . ...|+.+|-+++...+
T Consensus 68 ~~~~g~--~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g--------------~--------~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 68 WMMLKE--YTTAINFYGHALMLDASHPEPVYQTGVCLKMMG--------------E--------PGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHhh--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC--------------C--------HHHHHHHHHHHHHhCC
Confidence 444444 567888899999999999999999988654221 0 1258888888888776
Q ss_pred cc
Q 000149 1541 KN 1542 (2037)
Q Consensus 1541 ~~ 1542 (2037)
.+
T Consensus 124 ~~ 125 (144)
T PRK15359 124 AD 125 (144)
T ss_pred CC
Confidence 64
No 94
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.83 E-value=0.42 Score=57.90 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=83.9
Q ss_pred HhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-ccC----C---hhHHHH
Q 000149 1051 FRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-KSL----S---LQDELL 1122 (2037)
Q Consensus 1051 ~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~~~----~---l~~qil 1122 (2037)
..-+.|.+|+.++|.-++..+ + ...+.....+|...++.+.+..+.... ... + ......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~---~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG---D----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccccccccccccc---c----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 577889999999988665321 1 134566778899999999888886531 111 1 122445
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
.+++.|++++|..+|++++...|++.+...+++..+.+.|+.+.+....+.+....|... .+...-..+-..+|+-+.-
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhccccccccc
Confidence 678999999999999999999999999888888889999999875555544433323222 2223345677788888777
Q ss_pred HHHhhcccccCccccCCCCCcchHHHHHHHHHH
Q 000149 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQA 1235 (2037)
Q Consensus 1203 ee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLla 1235 (2037)
-+++...-.. .+.+..+...++.++..
T Consensus 234 l~~~~~~~~~------~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 234 LEYLEKALKL------NPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHT-
T ss_pred cccccccccc------ccccccccccccccccc
Confidence 6666543221 12234455556666544
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.78 E-value=3.1 Score=45.54 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
|...+..+...|+++.|.....++....+ +.+....|.++...|+..+|+..++.++.-.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----------------- 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----------------- 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------
Confidence 66778999999999999999999877754 46788999999999999999999999876211
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
.+ +.++.-+|.-+...|+ .+++++.|..|+++.|.-...|...|.-
T Consensus 90 --~~-----------------~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 --SH-----------------PEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 11 3355666666655555 8899999999999999988777666543
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.66 E-value=9.4 Score=46.96 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN 1382 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~ 1382 (2037)
..+.|...+++..+.|+++.|..+..+|...++++
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 45689999999999999999999999998877654
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.33 E-value=14 Score=46.28 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhhccCCh--hhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-hHHH
Q 000149 1309 KLMANWENRLKYTQPSL--WAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-NVHM 1385 (2037)
Q Consensus 1309 ~l~~~W~~RL~~~~~~~--~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-~~~i 1385 (2037)
.+...|+.||...-+.. ..-+|++..=..-+.....+ ...|....++|+|++.+..|..++..|....+. +...
T Consensus 289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED---PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 35556777755443332 22233333322222222211 256899999999999999999999988877654 4566
Q ss_pred HHHHHHHHcCCchHHHHHHHHHh
Q 000149 1386 EKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+-|+.+=+.|+..+|=+.=++++
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 78999999999998888777765
No 98
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.97 E-value=0.39 Score=45.04 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=46.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc-ChHHHHHHhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC-HLQAMVTHVDG 1173 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg-q~~~ll~~~~g 1173 (2037)
....+...|+|++|..+|+++++..|++.....++=.|+..+| +++..+...+.
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4556788999999999999999999999999989999999999 68876665554
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.84 E-value=4.7 Score=55.11 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.....|++....|+++.|...+..+.++.+ ..+.+.+|..|-+.++.++|+...++.+...|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------------- 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------------- 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------------
Confidence 45678889999999999999999999988754 35899999999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
..+.++.++|.-+.+.|+ .+++...|.++..-+|.-+++|..+|+-+.
T Consensus 152 ----------------------~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 152 ----------------------SSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 126678888998888887 889999999999999999999999998664
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.47 E-value=2.6 Score=53.76 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+...-+..+++- ...++++.|.+.+.+.... .|++.+--||++-..++..+|++.|+++++..|.
T Consensus 168 ~NyLv~~Ll~~l---~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~----------- 232 (395)
T PF09295_consen 168 NNYLVDTLLKYL---SLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ----------- 232 (395)
T ss_pred chHHHHHHHHHH---hhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-----------
Confidence 334444555544 4467899999888887654 4777777899999999999999999999864321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+..+...|+++...++ .+.+.+..++|+++.|.--++|+.||+.|=++
T Consensus 233 -------------------------d~~LL~~Qa~fLl~k~~--~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 233 -------------------------DSELLNLQAEFLLSKKK--YELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred -------------------------CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 03455566777766655 58888899999999999999999999988443
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.19 E-value=3.5 Score=42.22 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+...+....+.|.++.|...+.++....+ +.+.+..+.++...|+..+|+..++.++...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------------ 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP------------ 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC------------
Confidence 4678889999999999999999988865533 34778899999999999999999998875321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
.+ +..+.++..+|..+...++ .++..+.|.++++.+|...
T Consensus 71 -------~~--------------~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 71 -------KS--------------PKAPDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred -------CC--------------CcccHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCCh
Confidence 10 0113356666666655554 7788888999999888754
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.13 E-value=9 Score=44.96 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHH-------HHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHH
Q 000149 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLM-------HAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVI 581 (2037)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~-------saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll 581 (2037)
.+-..|..+|..|..+++--. -....+.+..+|+ ..+. ..-+...++.++..+...|.. ++++++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 345666777777777766441 1123333333333 3332 234667788999999998864 589999
Q ss_pred HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
+.++..|+.... +.....++.|...|..++.... +.+.+ .+..+.
T Consensus 93 ~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~-----------~~~~~---------------------~~~~l~ 137 (228)
T PF12348_consen 93 DILLPPLLKKLG---DSKKFIREAANNALDAIIESCS-----------YSPKI---------------------LLEILS 137 (228)
T ss_dssp HHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------H--HH---------------------HHHHHH
T ss_pred HHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHCC-----------cHHHH---------------------HHHHHH
Confidence 988888877775 3333455666666665543211 01111 133455
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
..++|.|+.||..++.-|...+...... .. .......+.+++..+..+..+.+ ++++..+-+|+..+
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~--~~----~l~~~~~~~~l~~~l~~~l~D~~-----~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSD--SS----VLQKSAFLKQLVKALVKLLSDAD-----PEVREAARECLWAL 204 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-------G----GG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccch--Hh----hhcccchHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHH
Confidence 6778999999999999999999887610 00 00111235677777776666543 68999999998876
No 103
>PRK09687 putative lyase; Provisional
Probab=89.93 E-value=3.4 Score=50.49 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2037)
.+.|--.|.|+...||.+|+..+.- ..+ ..+|..+..+.+++...|++.-...||.|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~---~~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQL---RGG----QDVFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh---cCc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3444455566666666666655432 222 234444555555555666666666666654
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.89 E-value=4.3 Score=55.47 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=66.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
+||.+.+++|.|.-|+..+|..+.-..+ -...... -+...
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------------------~~~a~~~---------~a~~L 130 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPD-------------------------------SSEAFIL---------MLRGV 130 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------------------cHHHHHH---------HHHHH
Confidence 7999999999999999999997753221 1111100 01122
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+.++.++|+.+++++|+..|++.+.+.-+=.||.++|+|+......+.+....|+.
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 356677788888888888888877777777777778888877776666665555543
No 105
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=89.86 E-value=9.4 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=100.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-c-cCChhH-HH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-K-SLSLQD-EL 1121 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~-~~~l~~-qi 1121 (2037)
.++.+..+.|.|..|+.+++...... | .....-.+..++.+.++++........- . .++... ..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-----p--------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-----M--------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-----C--------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 45677789999999999998743321 1 0123446677888899999877776421 1 121111 11
Q ss_pred H---HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1122 L---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1122 l---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
. ..+..|++++|..+|+++++..|+ .....++-.++.++|+++......+......|+...-+..++ .+....|+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG-~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG-YALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHCCC
Confidence 1 223449999999999999999996 677778888999999999888877776666665443333222 24445788
Q ss_pred hhhHHHHhhcc
Q 000149 1199 WDLMDEYLSGA 1209 (2037)
Q Consensus 1199 Wd~lee~l~~~ 1209 (2037)
++.-.+.+...
T Consensus 659 ~eeAi~~l~~A 669 (987)
T PRK09782 659 IAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH
Confidence 87766655543
No 106
>PRK12370 invasion protein regulator; Provisional
Probab=89.36 E-value=15 Score=49.42 Aligned_cols=142 Identities=13% Similarity=-0.023 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh----hHHHHHHHhh
Q 000149 1054 QAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL----QDELLSNKKS 1127 (2037)
Q Consensus 1054 ~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l----~~qil~~E~~ 1127 (2037)
+.+.+|+.+++.-+.-. |. ....+..|..+|...+++|...-.... ...|+- ......+...
T Consensus 318 ~~~~~A~~~~~~Al~ld-----P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-----HN-------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred hHHHHHHHHHHHHHhcC-----CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34778888877765432 21 123445666677777777665555431 222221 1123445667
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccc-hhhhhhHhHHHHHHHHhcCChhhHHHHh
Q 000149 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-PQYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2037)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~-p~~~~~l~~~~~EAAWrlg~Wd~lee~l 1206 (2037)
|++++|..+|+++++..|.+.......+..+...|+++......+...... |.... .......+.=.+|+.+.-..++
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~-~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI-LLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH-HHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777777777777665433223333445667766655554443322 22111 1111122222367766666555
Q ss_pred hc
Q 000149 1207 SG 1208 (2037)
Q Consensus 1207 ~~ 1208 (2037)
..
T Consensus 465 ~~ 466 (553)
T PRK12370 465 KE 466 (553)
T ss_pred HH
Confidence 44
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=89.33 E-value=1e+02 Score=42.05 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
-..|+.-|.+--+.|+.+.|..+|.+|....+ +......+.++-.+|+..+|.+..-.++.-
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---------------- 713 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---------------- 713 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc----------------
Confidence 46799999999999999999999999977653 344556667777888888998877666532
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARK 1506 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~ 1506 (2037)
.|+...+ ..-.|++++ +.|+..-.+...-.+.|++++|..-++||++|.-+.++-
T Consensus 714 ---dP~hv~s----------~~Ala~~ll-------e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G----- 768 (799)
T KOG4162|consen 714 ---DPDHVPS----------MTALAELLL-------ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG----- 768 (799)
T ss_pred ---CCCCcHH----------HHHHHHHHH-------HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----
Confidence 1221111 112344444 445544555555678999999999999999998754331
Q ss_pred hhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1507 RQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1507 ~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
-...|..||.-|++....
T Consensus 769 -----------------d~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 769 -----------------DSKQAAECFQAALQLEES 786 (799)
T ss_pred -----------------chHHHHHHHHHHHhhccC
Confidence 123689999999987543
No 108
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=61 Score=43.23 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=36.2
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHH-----HHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNC-----LLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~C-----L~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
..-+|.+|..+|+...+..++ .||+.| +-+++.|+......+-+....|- ..+-.++---..|++.+=
T Consensus 331 s~y~~~~A~~~~~klp~h~~n-----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYN-----TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhh
Confidence 445899999999984343333 244443 45677777665555544333331 111111222356777653
No 109
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=88.28 E-value=1.1e+02 Score=41.04 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
.++.+-.+-|-+.|-.+||..|.+-..=.....--+..|.-+.+...........|....-| .+.+..-|..|+=..-.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lw-lM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILW-LMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHH-HHHHHHHHhcCCcHHHH
Confidence 46777777788888888888887543211111122445666766666666656666543333 35566678888776666
Q ss_pred HHhhc
Q 000149 1204 EYLSG 1208 (2037)
Q Consensus 1204 e~l~~ 1208 (2037)
..+..
T Consensus 605 ~il~~ 609 (913)
T KOG0495|consen 605 VILDQ 609 (913)
T ss_pred HHHHH
Confidence 55544
No 110
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=91 Score=40.18 Aligned_cols=123 Identities=17% Similarity=0.314 Sum_probs=77.3
Q ss_pred HHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH-HHHHhCC
Q 000149 1388 AKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR-WIHYTGQ 1466 (2037)
Q Consensus 1388 AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak-wl~~s~~ 1466 (2037)
|...=..++|++|+...+.+++=+| -.+-+.-|.|- +++-.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp------------------------------------~~~~aWTLmGHEyvEmK-- 378 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNP------------------------------------KYLSAWTLMGHEYVEMK-- 378 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCc------------------------------------chhHHHHHhhHHHHHhc--
Confidence 4444556899999999999876221 11335666654 44332
Q ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH------HHHhhhhhcccCCcchhhhh----------chHHHHHH
Q 000149 1467 KQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV------DARKRQEENSEIGPSEKRWW----------FYVPDVLL 1530 (2037)
Q Consensus 1467 ~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~------~~~~~~~~~~~~~~~~~~~~----------~~l~~ai~ 1530 (2037)
....++..|+.|++++|.-.+|||.+|+-|+-+-. =-++.. ...+.+.+.| .-+..||.
T Consensus 379 -Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~----~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 379 -NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL----ELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred -ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 25788999999999999999999999998875510 011111 1222222222 23457999
Q ss_pred HHHHHhccCCcchhhhHHHHHHHh
Q 000149 1531 FYAKGLHRGHKNLFQALPRLLTLW 1554 (2037)
Q Consensus 1531 ~Yl~sl~~g~~~~~q~lpRlLtLW 1554 (2037)
||-+++..|.... ..+-|+-.|.
T Consensus 454 Cykrai~~~dte~-~~l~~LakLy 476 (559)
T KOG1155|consen 454 CYKRAILLGDTEG-SALVRLAKLY 476 (559)
T ss_pred HHHHHHhccccch-HHHHHHHHHH
Confidence 9999999886521 2344444444
No 111
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.02 E-value=3 Score=44.44 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=64.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchh--hhhhHhHHHHHHHH
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAW 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~--~~~~l~~~~~EAAW 1194 (2037)
....|...|+.++|...|++++....+.. ...+++=.++.++|+++..+...++.....|+ +...+..+..-+.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45668899999999999999999765543 34567778999999999888777766665554 34455566677889
Q ss_pred hcCChhhHHH
Q 000149 1195 RLGRWDLMDE 1204 (2037)
Q Consensus 1195 rlg~Wd~lee 1204 (2037)
..|+++.--+
T Consensus 87 ~~gr~~eAl~ 96 (120)
T PF12688_consen 87 NLGRPKEALE 96 (120)
T ss_pred HCCCHHHHHH
Confidence 9999976433
No 112
>PRK12370 invasion protein regulator; Provisional
Probab=87.99 E-value=11 Score=50.57 Aligned_cols=86 Identities=12% Similarity=-0.034 Sum_probs=64.1
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++...+..+=.++...|+++......+......|.... +......+....|+++.
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHH
Confidence 35678999999999999999999999888777778889999999888888877666665322 11222334556788887
Q ss_pred HHHHhhc
Q 000149 1202 MDEYLSG 1208 (2037)
Q Consensus 1202 lee~l~~ 1208 (2037)
-.++...
T Consensus 425 A~~~~~~ 431 (553)
T PRK12370 425 AIRLGDE 431 (553)
T ss_pred HHHHHHH
Confidence 6665543
No 113
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=87.41 E-value=6.6 Score=36.75 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+|...|......|.++.|...+.++....+. .+....|.+++..|+.++|+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888899999999999998888765443 4677788999999999999999888765
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.18 E-value=1.4 Score=43.37 Aligned_cols=79 Identities=14% Similarity=0.276 Sum_probs=55.3
Q ss_pred hcCHHHHHHHHHHHHccCCCc--hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH
Q 000149 1127 SGNWAEVFTSCEQALQMEPTS--VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~--~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee 1204 (2037)
.|+|+.|+..||+.++..|++ ......+-.|+.++|+|+......+. ....+.. ....-+..+|...+|+|+.-.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999999999999853 33445568999999999988887765 2222211 2223345899999999988766
Q ss_pred Hhh
Q 000149 1205 YLS 1207 (2037)
Q Consensus 1205 ~l~ 1207 (2037)
.+.
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.09 E-value=4.3 Score=49.08 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=76.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000149 1357 KLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2037)
Q Consensus 1357 klARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~ 1434 (2037)
.=+-|+|.|+.|..-=.+|..+.+.+ .+--+|.-+-+-|+...|++-.+.+|.-
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------------ 144 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------------ 144 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------------
Confidence 33568899999999999998887655 3446888888999999999999988752
Q ss_pred CCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
++...|+|..+|.-+-..| ..++++..|++|++++|.|+-.+-.|
T Consensus 145 ------------Dp~yskay~RLG~A~~~~g--k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 145 ------------DPHYSKAYGRLGLAYLALG--KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred ------------ChHHHHHHHHHHHHHHccC--cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 1234788888888664444 48888999999999999998444433
No 116
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.79 E-value=2 Score=40.14 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcC-CchHHHHHHHHHhh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTR-RSDGAIAELQQNLL 1409 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~ 1409 (2037)
.+..|...|....+.|.++.|.....+|.+.++. .+....+..++..| +..+|+..++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3678999999999999999999999999888654 57788999999999 68999999999876
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=86.61 E-value=2.7 Score=44.67 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+.++|..+|+.+++..|++......+-.|+..+|+++......+......|+....+. ....+-+..|+|+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~la~~~~~~g~~~ 102 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF-HAAECLLALGEPE 102 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHcCCHH
Confidence 345668899999999999999989998888888888999999998877766655444454333333 2344778889988
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 103 ~A~~~~~ 109 (135)
T TIGR02552 103 SALKALD 109 (135)
T ss_pred HHHHHHH
Confidence 7666544
No 118
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.57 E-value=1.3 Score=41.95 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
.|.+.++|++|..+++++++..|++.......=.|+..+|+|+......+..+...|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 367889999999999999999999988887788899999999988777776665555
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=86.10 E-value=4.3 Score=51.28 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=70.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
..+....-..|+|++|..+|+++++..|++.....++-.|+..+|+++..+..++..+...|....-+. ....+...+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~-~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL-RKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhC
Confidence 345566678899999999999999999999998888899999999999888888776666665443333 3345667889
Q ss_pred ChhhHHHHhhc
Q 000149 1198 RWDLMDEYLSG 1208 (2037)
Q Consensus 1198 ~Wd~lee~l~~ 1208 (2037)
+++.-.+++..
T Consensus 85 ~~~eA~~~~~~ 95 (356)
T PLN03088 85 EYQTAKAALEK 95 (356)
T ss_pred CHHHHHHHHHH
Confidence 99877666544
No 120
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=85.62 E-value=47 Score=40.87 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=113.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc-----CChh-
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-----LSLQ- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~-----~~l~- 1118 (2037)
-|++-=+..|-|.||=..+.+.+.+ +.+..+.++.|..||.+=.|..-+.-++....+ .+++
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDE------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcc------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 4667778889999998888876653 234567889999999998887766666552211 1111
Q ss_pred -----HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHH
Q 000149 1119 -----DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA 1193 (2037)
Q Consensus 1119 -----~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAA 1193 (2037)
+-...+....+.+.|.++.+++++.+|+.+..-+-+=+-....|+|+..+..-+.+....|++-.++.+.-.+|=
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 123445677888999999999999999987654333344567899999888888888889999888888888887
Q ss_pred HhcCChhhHHHHhhccc
Q 000149 1194 WRLGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1194 Wrlg~Wd~lee~l~~~~ 1210 (2037)
=.+|+=+.-..|+....
T Consensus 260 ~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 260 AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 78888888788876654
No 121
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=85.47 E-value=1.1e+02 Score=38.21 Aligned_cols=298 Identities=13% Similarity=0.002 Sum_probs=149.6
Q ss_pred HHHHHHHhhCCChHH-HHHHHHHhc--cCChh------HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000149 1090 SFLMEIYSFLDEPDG-LSGLARLHK--SLSLQ------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2037)
Q Consensus 1090 ~~L~~IYa~LdEpDg-~~Gi~~~r~--~~~l~------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2037)
-.+..+|..++.++. ..+..+... ..+.+ .+...+...|+.+.|...|+++++..|++...... -.++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHH
Confidence 455666666665555 444433111 11111 13345678899999999999999999987643221 112222
Q ss_pred c----cChHHHHHHhhhhhccchhhhhhHhHH--HHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHH
Q 000149 1161 M----CHLQAMVTHVDGLISRIPQYKKTWCMQ--GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQ 1234 (2037)
Q Consensus 1161 L----gq~~~ll~~~~gl~~~~p~~~~~l~~~--~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLl 1234 (2037)
+ |..+......+......|. .+... ...+....|+++.-.+.....-.. .+.+......++.++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~- 158 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPD---YWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVL- 158 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHH-
Confidence 2 3333332222221122222 11222 234556788888776666543221 111222333444444
Q ss_pred HHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHH-HHhhhHHHHHHHHHHhhccccccccCCCChHHH-HHHHH
Q 000149 1235 AMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKF-SKLMA 1312 (2037)
Q Consensus 1235 al~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l-~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 1312 (2037)
...++.++..+.++.+... .......+...|-.+ .-+....+.+++..++..... ..+........ .....
T Consensus 159 -~~~g~~~eA~~~l~~~l~~-----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 159 -EMQGRFKEGIAFMESWRDT-----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA-PSAESDPALDLLDAASL 231 (355)
T ss_pred -HHcCCHHHHHHHHHhhhhc-----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-cccCCChHHHHhhHHHH
Confidence 3345555444444333211 110111222222122 222334455665555532100 01100111121 22244
Q ss_pred HHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-----------CC
Q 000149 1313 NWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG-----------AP 1381 (2037)
Q Consensus 1313 ~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~-----------~p 1381 (2037)
.|+-++..-......|+.+.......... ......++..++.+-..|+.+.|...|..+.... ..
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHFPD----HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcCc----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 56666665555555665554443222111 2233445788999999999999998887654321 12
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...+-.|-..|.+|+..+|+..|..++.
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566788999999999999999999876
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.46 E-value=4.4 Score=52.51 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHH
Q 000149 1379 GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYS 1458 (2037)
Q Consensus 1379 ~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~a 1458 (2037)
.+|++..--.=|+.-.|+.++|+..++.++...|. -+...-.||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------------------------------------d~~lWNRLG 471 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------------------------------------DYLLWNRLG 471 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------------------------------------hHHHHHHhh
Confidence 36777777777888899999999999998763221 033455565
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc
Q 000149 1459 RWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR 1538 (2037)
Q Consensus 1459 kwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~ 1538 (2037)
--+ ++-.++++++++|++|.++.|.+-+++|-||--|=.+- +-..|+.+|+.+|..
T Consensus 472 AtL--AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG----------------------~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 472 ATL--ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG----------------------AYKEAVKHLLEALSM 527 (579)
T ss_pred HHh--cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh----------------------hHHHHHHHHHHHHHh
Confidence 544 34456999999999999999999999999987663331 223577788877743
Q ss_pred CC------------cchhhhHHHHHHHh
Q 000149 1539 GH------------KNLFQALPRLLTLW 1554 (2037)
Q Consensus 1539 g~------------~~~~q~lpRlLtLW 1554 (2037)
-. +.+.++|-+.|++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHc
Confidence 21 24667776555544
No 123
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=2.2e+02 Score=41.76 Aligned_cols=181 Identities=16% Similarity=0.255 Sum_probs=100.2
Q ss_pred HhhcccccchhhhccccChh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH----HHHHHHHHHHhhcCCC
Q 000149 363 KKMIPAVLPKLVVSQQDNDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER----RLLSALEFYCIQTGSD 436 (2037)
Q Consensus 363 ~~~~~~~LP~LVl~~~~~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~----~~~~~l~~~~~~~~~~ 436 (2037)
....+..+|.|...+ .|+. +......|=..+=.+-+.....++-.|+--|+.+.+.. ..++||....---+.+
T Consensus 993 ~p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 334445689999874 2332 23445555566677778888899999999999987643 4678887644333332
Q ss_pred hHHHHHhhhHHHHHHHHHhhcCCCchHHhhhh-cchhHHHHHHhhhcCCCCChhhhhHHHHHHHHH-H-hhhhhcCCCCh
Q 000149 437 NQEIFAAALPALLDELICFVDGGDSDEINERL-NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN-S-IDRKMLHAEDL 513 (2037)
Q Consensus 437 ~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~-~-~~~~l~~~~~~ 513 (2037)
.+-+.+-+|.+...+....+ |=-|+.|.. .+..+++.++--.+.++..-+ =-+.++.++- + ++.-++ ++-.
T Consensus 1072 -~~~~~e~lpelw~~~fRvmD--DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~--~~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1072 -FDQVKEKLPELWEAAFRVMD--DIKESVREAADKAARALSKLCVRICDVTNGA--KGKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred -hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccCCcc--cHHHHHHHHHHHHhccCcc-cchH
Confidence 33344455655544433221 212222111 112222222211111111000 0122333321 1 233333 2223
Q ss_pred HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q 000149 514 SLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN 550 (2037)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~ 550 (2037)
+.++-+|.-+..|++-.|+.+.++.|+.+.+|..+..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 4567789999999999999999999999999999874
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.96 E-value=4.9 Score=39.40 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=64.9
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhcccc
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDE 230 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~ 230 (2037)
.+.+.|..+.+..|+..++..|.++ +. .+-+.+|-.++.|++..||.+++.++..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~---~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------- 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL---GD--------PEAIPALIELLKDEDPMVRRAAARALGRI------------- 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC---TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc---CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------
Confidence 3667777889999999999998833 22 12455777777999999999999999873
Q ss_pred ccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 000149 231 NASSRSNELKLLDVIKLAFTAADDPLILETLLESTA 266 (2037)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~ 266 (2037)
.....+..+.+.+...++..++++++.++|
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123456677777888888888999988876
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.84 E-value=4.3 Score=41.56 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh--hhHhHHHHHHHH
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAW 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAAW 1194 (2037)
.+..+...|+|++|...|+.+++..|++ .+....+-+|+.+.|+++....+.+.+....|... .........+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3455678899999999999998888775 34556677888999999988888777665544321 122223345556
Q ss_pred hcCChhhHHHHhhc
Q 000149 1195 RLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1195 rlg~Wd~lee~l~~ 1208 (2037)
..|+++...+++..
T Consensus 88 ~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 88 ELGDKEKAKATLQQ 101 (119)
T ss_pred HhCChHHHHHHHHH
Confidence 67787776665543
No 126
>PRK11189 lipoprotein NlpI; Provisional
Probab=84.41 E-value=24 Score=43.39 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+..|...+.+..+.|..+.|.....+|.+.++ +.+....+.++...|+.++|+..++.+++-.|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------------ 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP------------ 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------
Confidence 4467899999999999999999999999887753 56778889999999999999999998875211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. -+.++..+|..+...|+ .+++++.|.++++.+|...
T Consensus 130 -------~-----------------~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 130 -------T-----------------YNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -------C-----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence 1 13356667766655554 8889999999999999875
No 127
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.26 E-value=1.6e+02 Score=39.26 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=134.5
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchh
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKA 324 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~ 324 (2037)
++..+... +++..+.+...+..++.+. ...++.......|..-|-|+++.||..|.++|.+++++... ..+++.
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~--- 116 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLV--- 116 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhc---
Confidence 44545544 4444556667788887755 34444667778899999999999999999999998755421 111111
Q ss_pred hhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhh
Q 000149 325 VLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVT 404 (2037)
Q Consensus 325 ~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~ 404 (2037)
.+.+++.++..+...--.+.+.| .++|..||+. ......++.+
T Consensus 117 ---~~~l~~~i~~~L~~~d~~Va~~A---------------------------------~~~L~~l~~~-~~~~~~l~~~ 159 (503)
T PF10508_consen 117 ---DNELLPLIIQCLRDPDLSVAKAA---------------------------------IKALKKLASH-PEGLEQLFDS 159 (503)
T ss_pred ---CccHHHHHHHHHcCCcHHHHHHH---------------------------------HHHHHHHhCC-chhHHHHhCc
Confidence 12344444444432222222222 2333333321 1122233334
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhhcCCChH--HHHH--hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhh
Q 000149 405 WIPKVLAFALHQADERRLLSALEFYCIQTGSDNQ--EIFA--AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVST 480 (2037)
Q Consensus 405 ~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~--~~~~--~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (2037)
++..-|.-++.+++...-.+++..+......+.. +... ..++.++.|| ... |.-.+ ..+.+.+..++.
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL----~~d--DiLvq--lnalell~~La~ 231 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL----DSD--DILVQ--LNALELLSELAE 231 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh----cCc--cHHHH--HHHHHHHHHHHc
Confidence 4444444444443332223333333322222211 1111 1233333333 222 21111 123344444443
Q ss_pred hcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH------HHHHHHHHHHHhcc-ccccchHHHHHHHHHHhc--C
Q 000149 481 VLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ------ALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--K 551 (2037)
Q Consensus 481 ~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~------~l~sl~~li~l~g~-~v~~~~pqI~a~L~saL~--~ 551 (2037)
...-..||.+. |++..+.+.+.++..-+ +-. .|+..|.|-.. .+ .+....|+++.+|...++ .
T Consensus 232 ----~~~g~~yL~~~--gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 232 ----TPHGLQYLEQQ--GIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred ----ChhHHHHHHhC--CHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCC
Confidence 33446777775 77666655554432111 111 23444444444 33 566677999999998775 5
Q ss_pred CCcchhhhHHHHHHHHHh
Q 000149 552 ESLQCEGLSVLHFFIEQL 569 (2037)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L 569 (2037)
+..+..|+.+|..+..+.
T Consensus 304 ~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTV 321 (503)
T ss_pred hhHHHHHHHHHHHHhCCH
Confidence 678889999999876653
No 128
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=83.91 E-value=4.5 Score=37.46 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh
Q 000149 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT 1464 (2037)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s 1464 (2037)
+..|+.++..|+.++|+..+++.+...| ..+.+++.+|..+...
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------------------------------~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------------------------------DNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------------------------------THHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHHHc
Confidence 3578999999999999999999876321 2366788889888777
Q ss_pred CCCCHHHHHHHHHHHHHhccch
Q 000149 1465 GQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1465 ~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
|+ .++....|+++++.+|..
T Consensus 45 g~--~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 45 GR--YDEALAYYERALELDPDN 64 (65)
T ss_dssp T---HHHHHHHHHHHHHHSTT-
T ss_pred CC--HHHHHHHHHHHHHHCcCC
Confidence 76 788889999999998863
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=83.90 E-value=5.2 Score=37.46 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=54.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+++.+++..|++......+-.|+...|+++......+......|... ........+....|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHHHHhHH
Confidence 34456678888888888888888887766666777788888888777666655444333322 11222334555666666
Q ss_pred hHHHHh
Q 000149 1201 LMDEYL 1206 (2037)
Q Consensus 1201 ~lee~l 1206 (2037)
...+++
T Consensus 86 ~a~~~~ 91 (100)
T cd00189 86 EALEAY 91 (100)
T ss_pred HHHHHH
Confidence 655544
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=83.58 E-value=27 Score=40.89 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2037)
Q Consensus 1381 p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akw 1460 (2037)
+...++.+..+...|+..+|+..+++.++..|. +....++++.+|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---------------------------------~~~~~~a~~~la~~ 79 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF---------------------------------SPYAEQAQLDLAYA 79 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------chhHHHHHHHHHHH
Confidence 356788888899999999999999988763221 11224567777877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchHH---HHHHHHhhhHHH
Q 000149 1461 IHYTGQKQKEDVITLYSRVRELQPMWEK---GYFYMAKYCDDV 1500 (2037)
Q Consensus 1461 l~~s~~~~~~~i~~~Y~~A~~l~~~weK---~~~~la~y~d~l 1500 (2037)
+...++ .++++..|.++++.+|+... +|+.+|..+...
T Consensus 80 ~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 80 YYKSGD--YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHhcCC--HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 776665 88899999999999986554 688888766443
No 131
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.71 E-value=52 Score=38.50 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
....+.++..+....+.|.++.|...+.++....+. .+.+..|..+...|+..+|+..++..+...|
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------- 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-------- 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--------
Confidence 455678999999999999999999999988665433 3557788999999999999999999886432
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccchHHHHHHH-
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT------GQKQKEDVITLYSRVRELQPMWEKGYFYM- 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s------~~~~~~~i~~~Y~~A~~l~~~weK~~~~l- 1493 (2037)
+++ ....++..+|.-.... ...+.+++++.|.++++.+|....++..+
T Consensus 102 -----------~~~--------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 102 -----------NHP--------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred -----------CCC--------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 111 1123444444443322 11236778899999999999876655333
Q ss_pred --HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc--chhhhHHHHHHHhhhcCc
Q 000149 1494 --AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK--NLFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1494 --a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~--~~~q~lpRlLtLWl~~g~ 1559 (2037)
+..+...-.............| -...|+..|-+++...++ +..+...++-......|.
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 3322211100000000000001 123577888887765433 334555555555555443
No 132
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=81.83 E-value=2.4e+02 Score=39.48 Aligned_cols=165 Identities=21% Similarity=0.202 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhc
Q 000149 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFL 592 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~ 592 (2037)
...|.-|=.++|.+ .-|....++|=|++-..+ +|-=++.-+-+...++.... +..+.|.+.-|.+.|....
T Consensus 871 edvksAAs~ALGsl---~vgnl~~yLpfil~qi~s---qpk~QyLLLhSlkevi~~~s---vd~~~~~v~~IW~lL~k~c 941 (1233)
T KOG1824|consen 871 EDVKSAASYALGSL---AVGNLPKYLPFILEQIES---QPKRQYLLLHSLKEVIVSAS---VDGLKPYVEKIWALLFKHC 941 (1233)
T ss_pred HHHHHHHHHHhhhh---hcCchHhHHHHHHHHHhc---chHhHHHHHHHHHHHHHHhc---cchhhhhHHHHHHHHHHhc
Confidence 44566666677653 334566677776653322 22223343444444444421 2334555566666666555
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCC--ch--hhHHHHHHHHHhcCCCC--HHHHHHHHHhhccC
Q 000149 593 ERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPS--IA--ALTEVNKAIQEARGPMT--LKDQLLAAVDGLNH 666 (2037)
Q Consensus 593 ~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~--ip--~L~~v~~~l~~~r~~~~--l~~~l~~~~~rl~~ 666 (2037)
+...|+ ++.-+.+-|-.|+.-+.+.|.-.+...-.=++ +- ..+.++-.+.+...+.+ +..+|..|+..+++
T Consensus 942 E~~eeg---tR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d 1018 (1233)
T KOG1824|consen 942 ECAEEG---TRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD 1018 (1233)
T ss_pred ccchhh---hHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC
Confidence 544333 36778888888888777766433222211010 00 00111111122223333 45788999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcHHH
Q 000149 667 ENLNVRYMVVCELSKLLKLKSED 689 (2037)
Q Consensus 667 en~~Vr~~aL~eL~~~L~~~~~~ 689 (2037)
..+.||..||.-+...-..+..-
T Consensus 1019 pDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1019 PDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred CchhHHHHHHHHHHHHHccCHhH
Confidence 99999999999998877666543
No 133
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.73 E-value=1.7e+02 Score=38.90 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=61.6
Q ss_pred cccCCChhhHHHHHHHhhcccC-ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 139 LNFHSDFSFLLNIYFEFLYDES-SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
|-....+.++-+ |.+.++--. |-+-+=-+++....|.....+.++.- -+..++||..+|.|..+.||.-.+-+++..
T Consensus 308 va~algv~~llp-fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~h-l~~l~~ci~~~l~D~~~~vRi~tA~alS~l 385 (975)
T COG5181 308 VADALGVEELLP-FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSH-LGPLLKCISKLLKDRSRFVRIDTANALSYL 385 (975)
T ss_pred HHHhhCcHHHHH-HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhh-hhhHHHHHHHHhhccceeeeehhHhHHHHH
Confidence 445677888888 888888844 88888888888888887777665433 256789999999999999999998888875
Q ss_pred h
Q 000149 218 L 218 (2037)
Q Consensus 218 ~ 218 (2037)
.
T Consensus 386 a 386 (975)
T COG5181 386 A 386 (975)
T ss_pred H
Confidence 4
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=80.99 E-value=20 Score=37.90 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..-+..+..+.+.|+++.|...+..+...+ .+.+....|..+...|+..+|+..++.++...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------------- 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------------- 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------
Confidence 445677888888899999988888776654 445777788888888999999988888765211
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. ....+..+|.-....|+ .+.+++.|+++++++|.-.
T Consensus 83 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 ----D-----------------DPRPYFHAAECLLALGE--PESALKALDLAIEICGENP 119 (135)
T ss_pred ----C-----------------ChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccc
Confidence 0 02345556655555554 7788888888888888553
No 135
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.67 E-value=4.2 Score=35.04 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1452 k~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
.+++.+|+++.+.|+ .+++.+.|+++++.+|+...+|+.||+
T Consensus 2 ~~~~~la~~~~~~G~--~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQ--PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357888999988887 899999999999999999999999985
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=80.61 E-value=16 Score=39.92 Aligned_cols=93 Identities=25% Similarity=0.222 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...+|..|+.+-..|.++.|...+..+.... ++ -+.+.-|+++..+|+.++|+..|+..-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-------------- 113 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-------------- 113 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--------------
Confidence 4568999999999999999999999887654 23 2667789999999999999999965210
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVR 1480 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~ 1480 (2037)
....+.+..++|.-+...|+ .+++++.|++|+
T Consensus 114 -----------------------~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 -----------------------EAFKALAAELLGDIYLAQGD--YDEARAAYQKAL 145 (145)
T ss_pred -----------------------cchHHHHHHHHHHHHHHCCC--HHHHHHHHHHhC
Confidence 00124456667776666555 778888888763
No 137
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.09 E-value=16 Score=51.99 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=127.1
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
.+-|--+|+|+...||..|+..+.-+- + ....+.|..+.+|....||..-+.+||-+. ... ... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~---~~~----~~~-~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----P---PGFGPALVAALGDGAAAVRRAAAEGLRELV---EVL----PPA-P 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----c---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcc----Cch-H
Confidence 344556789999999999999887652 2 234556666678888999999888887652 000 000 0
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000149 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2037)
...-.++..+..--...-+.|.... .-+ . ..+.+. +...+.+|+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~-------------------------------~~~---~-~~l~~~-L~D~d~~VR 731 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALR-------------------------------AGD---A-ALFAAA-LGDPDHRVR 731 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc-------------------------------cCC---H-HHHHHH-hcCCCHHHH
Confidence 0000111111100001111111110 001 1 134454 456666899
Q ss_pred HHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHH
Q 000149 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2037)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2037)
.+.+..|.++- .. +.|..++.|++..||.+++.++..+= . ... .-+..+
T Consensus 732 ~~Av~aL~~~~---~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~-----------~---~~~---~~~~~L 780 (897)
T PRK13800 732 IEAVRALVSVD---DV-----------ESVAGAATDENREVRIAVAKGLATLG-----------A---GGA---PAGDAV 780 (897)
T ss_pred HHHHHHHhccc---Cc-----------HHHHHHhcCCCHHHHHHHHHHHHHhc-----------c---ccc---hhHHHH
Confidence 99999999861 11 12344679999999999999998732 1 011 012334
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.+ +..-+|+.|..+.+.++|.++... ++ .-.|+..|..+++.||..|..-+-.+
T Consensus 781 ~~-ll~D~d~~VR~aA~~aLg~~g~~~----~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 781 RA-LTGDPDPLVRAAALAALAELGCPP----DD----VAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCCcc----hh----HHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 44 334467999999999999984321 11 23478889999999999998877655
No 138
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=79.81 E-value=2.3e+02 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHH--HHHHHHHHcCCchHHHHHHHHHh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHM--EKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~i--E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+.+..+-=||++-.+|.++.|..-+-+|.++..++.+| ..||.+-..++.++|-.++...-
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 34556778999999999999999999999999888777 58999999999999999887653
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.27 E-value=4.9 Score=48.56 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHH
Q 000149 1116 SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGV 1190 (2037)
Q Consensus 1116 ~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~ 1190 (2037)
++..+.-.+.+++++++|+.+|..|++..|.|..++..---.+.+||+++..+.-++.-+.-.|.+.+.|..+++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 466777888999999999999999999999999888777777889999998888787776767777777766654
No 140
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.09 E-value=16 Score=51.88 Aligned_cols=210 Identities=17% Similarity=0.073 Sum_probs=128.5
Q ss_pred hHHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000149 5 DSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2037)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2037)
..+.|.-+|.|+...||..|+-++--++-..... . .|....++....|+......||.+.- |.
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~--~----~L~~~L~~~d~~VR~~A~~aL~~~~~--~~--------- 715 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA--P----ALRDHLGSPDPVVRAAALDVLRALRA--GD--------- 715 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--H----HHHHHhcCCCHHHHHHHHHHHHhhcc--CC---------
Confidence 4566778999999999999999885553222111 1 22223334567999999999988641 11
Q ss_pred cccccccccccccccc---cHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCc
Q 000149 85 NACKLLLNVEDDILSQ---TVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESS 161 (2037)
Q Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (2037)
..+|+.....+.+. ..-..|... .+ ... +..+ +...+
T Consensus 716 --~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------~~-----------~~~-l~~~-l~D~~ 755 (897)
T PRK13800 716 --AALFAAALGDPDHRVRIEAVRALVSV-------------------------DD-----------VES-VAGA-ATDEN 755 (897)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHhcc-------------------------cC-----------cHH-HHHH-hcCCC
Confidence 11222211111110 000011110 00 011 2333 55667
Q ss_pred cchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHH
Q 000149 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (2037)
.+|+.++...|.++-...... +.-|..++.|++..||.++...+..+- . . ...
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g-----------~---~----~~~ 808 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG-----------C---P----PDD 808 (897)
T ss_pred HHHHHHHHHHHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC-----------C---c----chh
Confidence 899999999998874432211 223445679999999999999888731 1 0 111
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
...+.+++.. +|++|....+.+++.+.... ++-.|+..|..++..||..|.+-|-.+
T Consensus 809 ~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 809 VAAATAALRA-SAWQVRQGAARALAGAAADV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcC-CChHHHHHHHHHHHhccccc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2235555544 67899999999999974322 456688888999999999999887765
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=78.22 E-value=14 Score=45.04 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
.|+++.+.+|+.+-.+.|-....+|...+ ...+.++.|.+-|..++ ...|.++.+.+++..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--------------- 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--------------- 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC---------------
Confidence 69999999999999999999999997654 35789999999999554 5559999999987421
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH---HHHHHHHhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE---KGYFYMAKY 1496 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we---K~~~~la~y 1496 (2037)
......+.|..++...| +.+.+...|.+++..-+... +.|-.|..|
T Consensus 68 ---------------------~~~~~~~~Y~~~l~~~~--d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 68 ---------------------SDPDFWLEYLDFLIKLN--DINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp ---------------------T-HHHHHHHHHHHHHTT---HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 01346778888888776 47889999999988766554 344444333
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=2.8e+02 Score=37.97 Aligned_cols=143 Identities=13% Similarity=0.210 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhcCCCcchhhhHHHHH--HHHHhccCCCc-----chhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 000149 538 VPKILVLLMHAINKESLQCEGLSVLHF--FIEQLSRVSPS-----STKHVISQVFAALIPFLERDKDNPSVLLNKVVKIL 610 (2037)
Q Consensus 538 ~pqI~a~L~saL~~~~L~~~~l~~W~~--fv~~L~~~~~~-----~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il 610 (2037)
.+.+..+|..+|..++ +..+=-||.. |++...+-.++ ...|...-|+..|+.--++-+-..+-.|.-+++-|
T Consensus 447 l~~~l~~l~~gL~DeP-rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 447 LQSKLSALLEGLNDEP-RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 3455666777775444 3344457776 66554332221 23467788888888877765433344677888989
Q ss_pred HHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHH-----------HHHHHHHhhccCCChhHHHHHHHHH
Q 000149 611 EDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLK-----------DQLLAAVDGLNHENLNVRYMVVCEL 679 (2037)
Q Consensus 611 ~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~-----------~~l~~~~~rl~~en~~Vr~~aL~eL 679 (2037)
..||.-..+..+.....+. .-.++++++.++...-...-+ .-|+..++..++.-..+..+-+.-+
T Consensus 526 mElIk~st~~vy~~v~~~~----l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQKLT----LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred HHHHHcCcHHHHHHHHHHH----HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 8888776655554332221 123456666666222111112 2345566777776666666666666
Q ss_pred HHHHhh
Q 000149 680 SKLLKL 685 (2037)
Q Consensus 680 ~~~L~~ 685 (2037)
-+.++.
T Consensus 602 lri~~s 607 (859)
T KOG1241|consen 602 LRIFES 607 (859)
T ss_pred HHHHcC
Confidence 666665
No 143
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=77.66 E-value=12 Score=52.34 Aligned_cols=241 Identities=20% Similarity=0.206 Sum_probs=154.4
Q ss_pred cccchhhhhhhhhhchhhhhh---h---cCc-cchHHHHHHHhhhchh-hhhhhhhhccchhhhhhhcc-Cccccccccc
Q 000149 13 LRDEFDEVRAEAVISLPVIVM---W---SGL-GVLTNVFKRLESLGKD-ECEKVKRVFPISFGFLSCLS-GTCSSIVDWD 83 (2037)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (2037)
++|....||++|+..+--++- = ++- =+-.+.|+.|-++..| ...-|+=.+|..++.|+=+- +
T Consensus 471 ~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--------- 541 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--------- 541 (1431)
T ss_pred hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------
Confidence 578889999999887643321 1 111 1235789999999999 88889999999999887432 1
Q ss_pred ccccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHH---HHHhhcccC
Q 000149 84 KNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNI---YFEFLYDES 160 (2037)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~ 160 (2037)
|+ .+-|.-+|.--++.-.+++ . .+-.++-+--.|+-+ .+--|+.++
T Consensus 542 ------Fl------------e~~q~~~~~g~~n~~nset---------~----~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 542 ------FL------------ELTQELRQAGMLNDPNSET---------A----PEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred ------HH------------HHHHHHHhcccccCccccc---------c----cccccchHHHHHHHHHHHHHHHHHcCC
Confidence 11 1222333331111111100 0 011111111122222 233455666
Q ss_pred ccchhHHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch
Q 000149 161 SEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2037)
+.-|+=+.+++|.+++.+=. .|+++.- .+.|| +|+|..+|-||=-.|.. -++|-|. ++
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksND~iLsh------LiTfL-NDkDw~LR~aFfdsI~g-------vsi~VG~----rs 652 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSNDVILSH------LITFL-NDKDWRLRGAFFDSIVG-------VSIFVGW----RS 652 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccccchHHH------HHHHh-cCccHHHHHHHHhhccc-------eEEEEee----ee
Confidence 68899999999999987643 4554432 44666 99999999999777663 1223333 44
Q ss_pred hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 237 NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
-++=++=-+.+++++.+.- |.+..|.++.-+++-..++--...-.+-+-.=.|.|||.-||-.+..-|..+++.-
T Consensus 653 ~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 4666777888999998887 99999998888777555554444445555666889999999999999998886553
No 144
>PRK09687 putative lyase; Provisional
Probab=77.09 E-value=71 Score=39.21 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=104.5
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
.-+++..+++.+++.+|+-+.+.+|.++-...... ... -+.-+...+.|++..||.++...+..+
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~----a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPK----IVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chH----HHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 34555666788899999999999998875443311 001 122233445899999999998887541
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~ 307 (2037)
+...-+.-+..++. -+|+.|..-...++|.+ +. +.+ -+.-.|+.-|..+|.-||..|..=+-+
T Consensus 156 ---------~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~--~~--~~~---~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 156 ---------NDEAAIPLLINLLK-DPNGDVRNWAAFALNSN--KY--DNP---DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ---------CCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcC--CC--CCH---HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 11224455666554 46778999999999997 22 222 234457777799999999999876655
Q ss_pred HHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhh
Q 000149 308 SCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVV 375 (2037)
Q Consensus 308 la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl 375 (2037)
+ ++ .+-.+++.+.+.... .-...++.|=.+... -++|.|.-
T Consensus 219 ~-----~~-------------~~av~~Li~~L~~~~-~~~~a~~ALg~ig~~--------~a~p~L~~ 259 (280)
T PRK09687 219 R-----KD-------------KRVLSVLIKELKKGT-VGDLIIEAAGELGDK--------TLLPVLDT 259 (280)
T ss_pred c-----CC-------------hhHHHHHHHHHcCCc-hHHHHHHHHHhcCCH--------hHHHHHHH
Confidence 4 11 122355666655433 444556654444443 35566555
No 145
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=76.78 E-value=14 Score=42.35 Aligned_cols=125 Identities=11% Similarity=0.046 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.++.-|++|+...+.........++.-|-..+....-.- -...+. +..|.+..-+.+...|....+..+||||..+
T Consensus 44 ~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~L--L~~~~~--~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaL 119 (184)
T smart00145 44 KALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALEL--LSPKFP--DPFVRAYAVERLESASDEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHH--hCccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 577788888888877755566678888844332100000 000000 1234444445678899999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000149 1607 CHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2037)
Q Consensus 1607 ~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS~~~~R~~~a~~Il~~~ 1658 (2037)
.+..-. ...+...|.+-+...| ++.+|.+.+.+.. +.-..|...+++.+
T Consensus 120 r~E~~~-~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~--~~~~~r~~~~le~~ 171 (184)
T smart00145 120 KYEPYL-DSALARFLLERALKNQRLGHFFYWYLKSELED--PHYSIRFGLLLEAY 171 (184)
T ss_pred Hccccc-ccHHHHHHHHHHhhCHHHHHHHHHHHHHHccC--chhHHHHHHHHHHH
Confidence 887321 3445555555555555 6779999776532 22334444444443
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=76.39 E-value=23 Score=39.54 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHH
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNK 1125 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E 1125 (2037)
+|..-++.|.|.-|...++.-+.- +| ..+|+..|+... ++
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~-----Dp-----------------------~~~~y~~gLG~~------------~Q 80 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY-----DA-----------------------WSFDYWFRLGEC------------CQ 80 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----Cc-----------------------ccHHHHHHHHHH------------HH
Confidence 456666777777777777665432 11 456778887543 45
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT 1169 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~ 1169 (2037)
..|+|++|..+|++++...|++...+...=.|++.+|+.+....
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 78999999999999999999999988888899999999876443
No 147
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=76.11 E-value=2.1e+02 Score=35.64 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=124.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCch---hhh------------hhHHHHHHhccChHHHHHHhhhhhccchhhhhhH
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSV---QRH------------SDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTW 1185 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~------------~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l 1185 (2037)
...+-+.|..+.|..-+...|+.+|++- +.| ...+...-..|.+.++..+.+.++.-.| |...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 3456799999999999999999999642 222 2344445556777777777766654433 55556
Q ss_pred hHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchh
Q 000149 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2037)
Q Consensus 1186 ~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~e 1265 (2037)
..++++|--..|+=...-.-+..... .+++. +.-.+.+.+.+..+- +....+...|.++-- --
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~ask-----Ls~Dn-Te~~ykis~L~Y~vg-----d~~~sL~~iRECLKl------dp 254 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASK-----LSQDN-TEGHYKISQLLYTVG-----DAENSLKEIRECLKL------DP 254 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccc-hHHHHHHHHHHHhhh-----hHHHHHHHHHHHHcc------Cc
Confidence 66666665554443221111111111 11121 223344555555442 233445555554321 11
Q ss_pred hHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCC
Q 000149 1266 SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG 1345 (2037)
Q Consensus 1266 Sy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~ 1345 (2037)
.-.+|||.--+|..+.-.-+...-..+ ...|-.=+.--..-+..-..+-.+|--+|
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie------------------~~~~t~cle~ge~vlk~ep~~~~ir~~~~------ 310 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIE------------------EKHWTECLEAGEKVLKNEPEETMIRYNGF------ 310 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh------------------hhhHHHHHHHHHHHHhcCCcccceeeeee------
Confidence 234555555555444322211111100 01122222111000000000011111111
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
-...+.-|+.|++..|..--..+.+..+. ++.+++|.-+....+.+.||+.-+.+.+-
T Consensus 311 -------r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 311 -------RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred -------heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 12355678889888887766666555443 46779999988888999999999988653
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=74.89 E-value=3.4e+02 Score=38.23 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1130 WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
.++|..++...++..|+|+-..+|.-+=+.+-|.|-..+.+..+.+..+|....+.---.--|-|.+|+-+....-...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 68899999999999999998888887777788889888888888776666554443222235667777654432211111
Q ss_pred cccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHH
Q 000149 1210 DEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAI 1289 (2037)
Q Consensus 1210 ~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~ 1289 (2037)
-+- ++ .+.+.-+|-++..+..+|. +||..+...+.+ +...
T Consensus 226 lqL-------dp-~~v~alv~L~~~~l~~~d~-----------------------~s~~~~~~ll~~---------ay~~ 265 (1018)
T KOG2002|consen 226 LQL-------DP-TCVSALVALGEVDLNFNDS-----------------------DSYKKGVQLLQR---------AYKE 265 (1018)
T ss_pred Hhc-------Ch-hhHHHHHHHHHHHHHccch-----------------------HHHHHHHHHHHH---------HHhh
Confidence 110 01 1222222222222222222 222222111111 0000
Q ss_pred hhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHH
Q 000149 1290 LVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETAT 1369 (2037)
Q Consensus 1290 ~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~ 1369 (2037)
. ...+ .+.+.+.+-+-...+....|+ |+++...... .....++...+.||.--..|.++.|+
T Consensus 266 --------n---~~nP---~~l~~LAn~fyfK~dy~~v~~--la~~ai~~t~--~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 266 --------N---NENP---VALNHLANHFYFKKDYERVWH--LAEHAIKNTE--NKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred --------c---CCCc---HHHHHHHHHHhhcccHHHHHH--HHHHHHHhhh--hhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 0 1112 234445555555666666663 3444433332 23345667778888888899999999
Q ss_pred HHHHHHhhcCCCh---HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000149 1370 RAILEAQASGAPN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2037)
Q Consensus 1370 ~aLl~a~~~~~p~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2037)
.+-.++.+.++.+ ..+--++..-..|+-+.|+...+..++.+|
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 9999887765544 233446777788999999999998887654
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.31 E-value=62 Score=38.79 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV 1171 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~ 1171 (2037)
.+.+|..|+|++|.+.|+..|+.+|.+.-.+...+--++..|+--..+...
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 456799999999999999999999998777767777777888855444333
No 150
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=74.02 E-value=26 Score=44.66 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=81.2
Q ss_pred CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhc
Q 000149 1775 DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISC 1854 (2037)
Q Consensus 1775 dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~ 1854 (2037)
+|+ .++.|| .+++-|..+.+|+..+|.-.... .+.++++++++-+.+.|-.|||++..--
T Consensus 69 ~g~--kivYKP-Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c~----------- 128 (370)
T PF13575_consen 69 SGK--KIVYKP-RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPCN----------- 128 (370)
T ss_pred CCC--EEEEeC-cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCCC-----------
Confidence 553 466785 67999999999999999875432 2667888999988779999999875110
Q ss_pred CCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000149 1855 GKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGD 1934 (2037)
Q Consensus 1855 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGD 1934 (2037)
...++ .+|=+-++.+..+.|+||..|
T Consensus 129 -------~~~ev-----------------------------------------------~~yY~r~G~llal~y~L~~~D 154 (370)
T PF13575_consen 129 -------SEEEV-----------------------------------------------ERYYYRLGVLLALLYLLNGTD 154 (370)
T ss_pred -------CHHHH-----------------------------------------------HHHHHHHHHHHHHHHHhCCCc
Confidence 00011 112223667778999999999
Q ss_pred CCCCceeEecCCCcEEEeeccccccc
Q 000149 1935 RHGENILFDSTTGDCVHVDFSCLFDK 1960 (2037)
Q Consensus 1935 RH~eNILid~~tG~vvHIDF~~~f~~ 1960 (2037)
=|-|||.-+ -+.-|=||+=++|..
T Consensus 155 lH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 155 LHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred ccccceEEe--CCCcEEEehhhhCCc
Confidence 999999996 677889999888876
No 151
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=73.96 E-value=48 Score=38.42 Aligned_cols=52 Identities=4% Similarity=-0.022 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
++-+++...++.+++.+|++.+....+=+++..+|+++......+......|
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P 104 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG 104 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555444444555555555555444443333333
No 152
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.68 E-value=72 Score=42.02 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=111.1
Q ss_pred hhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHH
Q 000149 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQ 1405 (2037)
Q Consensus 1328 ~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2037)
-+-+|.+-.+|... ++.++.|.+....--.++.-+.|..||.+|.++.+.+ +-+.-|=-+=.+|.+.+|+..|.
T Consensus 302 ~~A~LafEAAVkqd----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 302 SEAALAFEAAVKQD----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred hHHHHHHHHHHhhC----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35566666665543 3567889999999899999999999999999987665 55556666667899999999999
Q ss_pred HHhhcCCccc-ccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH----------------HHHHhCCCC
Q 000149 1406 QNLLNKPVEV-VGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR----------------WIHYTGQKQ 1468 (2037)
Q Consensus 1406 ~~i~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak----------------wl~~s~~~~ 1468 (2037)
+=|...+... ...+.... . +..+.+... ......+.+.+|-.|+ -+.-+ ..
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~----~--~~~~~s~~~----~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--~e 445 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENE----D--FENTKSFLD----SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--GE 445 (579)
T ss_pred HHHHhCccchhccccCccc----c--ccCCcCCCC----HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--hH
Confidence 9887654332 11110000 0 000000000 0001112222222222 11111 12
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchh
Q 000149 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544 (2037)
Q Consensus 1469 ~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~ 1544 (2037)
.+..+..|+.|++..|+-+.-|-.||--.- |.. --..||..|-+|+.+-+.|++
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLA------------N~~----------~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLA------------NGN----------RSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhc------------CCc----------ccHHHHHHHHHHHhcCCCeee
Confidence 567888999999999999999988875321 100 012699999999999999875
No 153
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=73.58 E-value=5.5 Score=48.09 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.3
Q ss_pred hCCChhH-HHHHHHHHHHHHHHHHHHHHHhccC----CCCCCceeEecCCCcEEEeeccccc
Q 000149 1902 TFSEPAA-WFRARVAYAHTTAVWSMVGHIVGLG----DRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1902 ~f~~p~~-w~~aR~~Ft~SlAv~SmvgYILgLG----DRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
.|++|.+ ||.|. +.+.+-|+=+++ |-.|||||+| .+|++=-+||||.=
T Consensus 140 rF~e~~arFYAAe--------ivlAleylH~~~iiYRDLKPENiLlD-~~G~iKitDFGFAK 192 (355)
T KOG0616|consen 140 RFSEPHARFYAAE--------IVLALEYLHSLDIIYRDLKPENLLLD-QNGHIKITDFGFAK 192 (355)
T ss_pred CCCchhHHHHHHH--------HHHHHHHHHhcCeeeccCChHHeeec-cCCcEEEEeccceE
Confidence 6788765 55554 556677776554 8899999999 69999999999873
No 154
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=73.55 E-value=3.3e+02 Score=36.57 Aligned_cols=345 Identities=16% Similarity=0.168 Sum_probs=178.6
Q ss_pred ccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchh
Q 000149 158 DESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN 237 (2037)
Q Consensus 158 ~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (2037)
+-+|+.||-++--+|+....-..... -....+-+..++...+-+-|.-+..-+..|+.+.. -..-.
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~----------i~~~~ 171 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG----------IESLK 171 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH----------Hhhhh
Confidence 35677788776666665554433221 12233333444566777777777777888773332 33445
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccC
Q 000149 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQH-FLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGG 316 (2037)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~-~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~ 316 (2037)
++.||+.+-.+.-..+...-.|-.+....-.++..-..-|- +.-.|-.++...|.....||-.|..-.-.+-..-.-.+
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch
Confidence 58899999988887776666662222222222222122221 22345567888888889999888877766633332211
Q ss_pred cccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhc-cccChhH----HHHHHHHH
Q 000149 317 CELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS-QQDNDQA----VNIINELA 391 (2037)
Q Consensus 317 ~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~-~~~~~~~----~~~i~~ia 391 (2037)
-++++++- |-.+.-..+.+.-..++.+ . .++-.-..-|....|-++|.|.-. .....++ .+.+..++
T Consensus 252 VK~llpsl------l~~l~~~kWrtK~aslell-g-~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 252 VKLLLPSL------LGSLLEAKWRTKMASLELL-G-AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred hhHhhhhh------HHHHHHHhhhhHHHHHHHH-H-HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12222211 1111222344444444443 2 455556778888889999988642 1122121 23444443
Q ss_pred HHcCCCchhHHhhhHHHHHHHHh-ccccHH-HHHHHHHHHHhhc---CCChHHHHHhhhHHHHHHHHHh-hcCCCchHHh
Q 000149 392 KCLNTDMVPLIVTWIPKVLAFAL-HQADER-RLLSALEFYCIQT---GSDNQEIFAAALPALLDELICF-VDGGDSDEIN 465 (2037)
Q Consensus 392 ~~~~~~~~~l~~~~~~~Ila~ll-~~~~~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~~~l~ell~~-~~~~~~~~~~ 465 (2037)
+-..-+ -.-.++-.|+ .-.++. .+.+|++-+..-+ ..+.. --+++..+|.+ +.+-++ +.+
T Consensus 324 svidN~-------dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p------sLalmvpiL~R~l~eRst-~~k 389 (569)
T KOG1242|consen 324 SVIDNP-------DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAP------SLALMVPILKRGLAERST-SIK 389 (569)
T ss_pred HhhccH-------HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecch------hHHHHHHHHHHHHhhccc-hhh
Confidence 322111 1111222222 222343 5666665443221 11111 11234444431 122221 122
Q ss_pred hhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-ccccchHHHHHH
Q 000149 466 ERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVL 544 (2037)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~ 544 (2037)
|.+ ...+..|+....++..++.||..=+=|+=..+. .+ ..+.|--+-++++.++|-+|. .-....|-++.+
T Consensus 390 -r~t--~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~----d~-~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 390 -RKT--AIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD----DA-VPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred -hhH--HHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc----CC-ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 221 233446666777888999998876666655443 33 234556689999999999998 444455655554
Q ss_pred HH
Q 000149 545 LM 546 (2037)
Q Consensus 545 L~ 546 (2037)
++
T Consensus 462 ~~ 463 (569)
T KOG1242|consen 462 LT 463 (569)
T ss_pred hc
Confidence 44
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=73.47 E-value=48 Score=37.18 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
.....+..++..|+.++|+..++++++..+ . ....+.++..+|.-..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~--------------~~~~~~~~~~la~~~~ 83 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEE-------------------D--------------PNDRSYILYNMGIIYA 83 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------------------c--------------cchHHHHHHHHHHHHH
Confidence 456778888899999999999988875211 0 0011335555666555
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..|+ .+++...|.+|++.+|....++..+|..|-.+-.... . .+. ......+...++..|-+++..++..
T Consensus 84 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-a------~~~-~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 84 SNGE--HDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAE-E------AGD-QDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHh-H------hhC-HHHHHHHHHHHHHHHHHHHhhCchh
Confidence 5554 6888899999999999988888888877644321000 0 000 1112234567888888888877765
No 156
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=73.24 E-value=79 Score=37.06 Aligned_cols=145 Identities=17% Similarity=0.074 Sum_probs=82.1
Q ss_pred HHHHHhhcccCccchhHH--HHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 150 NIYFEFLYDESSEEVQLS--CVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~--~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
..+.+.+-+.+|.=++-| ++..|.+.++++.... ...++.+|-..+.++.+.+|.++..++..++++-.
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~----~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----- 126 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY----ADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----- 126 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH----HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----
Confidence 445555555555434433 5666666666653221 23344555555589999999999999999872111
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chh-----HHHHHHHHHHHhCCCCcchHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQH-----FLFLLILLVEQLDNPHVTVRMNA 301 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~-----~~~~l~~Li~~L~~~n~~~~~~a 301 (2037)
....++..+-......++|++.+.++..+..+....... ..+ +....=.+...|..+++-||..|
T Consensus 127 ---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 127 ---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp ---------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 112232233333566788999999999999986655311 111 22233448888899999999999
Q ss_pred HHHHHHHHhhh
Q 000149 302 SRLIRKSCFFH 312 (2037)
Q Consensus 302 ~~~i~~la~~~ 312 (2037)
.+-+..+.++.
T Consensus 198 r~~~~~l~~~~ 208 (228)
T PF12348_consen 198 RECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999885443
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=73.14 E-value=45 Score=37.19 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...+.+|+..+..++..|.++.|...+.+|..... +.+....|.++-..|+.++|+..++.++.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999875532 23566778899999999999999999876
No 158
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.12 E-value=4.6 Score=32.14 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2037)
....|.+.|+|++|..+|+++++..|++
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3456889999999999999999999875
No 159
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=72.94 E-value=35 Score=41.87 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHhccCCCCCCceeEecCCCcEEEeecccc
Q 000149 1927 GHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1927 gYILgLGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
.+.+-=||=|++||+++. |.+.-|||+.+
T Consensus 186 ~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 186 IRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 466778999999999984 78999999844
No 160
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.86 E-value=89 Score=38.51 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=78.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHH-HhccC-----Chh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSL-----SLQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~-~r~~~-----~l~ 1118 (2037)
.+++.=++-|-+-||=-.+-+...+.+ ..+.+-.|.+.|..||.|....-+.. -..+. -+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-------------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 567777777888888776666554322 23567799999999999997765543 11111 244
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
.+...||..|+.++|+..|..++..+|.|++...-+-.-+---|+.+..+.+-+-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 67889999999999999999999999999875211111122335555555554433
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.79 E-value=41 Score=40.83 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=78.5
Q ss_pred HHHHHHHHHH-HHHcCChHHHHHHHHHHhhcC-----CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000149 1349 GNCWLQYAKL-CRLAGHYETATRAILEAQASG-----APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1349 ~~~WL~~Akl-ARKag~~~~A~~aLl~a~~~~-----~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
...|...|.- -.+.|.++.|..++....... .|++.+-.+++++.+|+..+|+...+..++..|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---------- 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---------- 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------
Confidence 3567777764 477899999998887765432 256888999999999999999999998876432
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. .+....+++.+|.-+.+.| +.+++.+.|+++++.+|+.+
T Consensus 212 ---------~--------------s~~~~dAl~klg~~~~~~g--~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 212 ---------K--------------SPKAADAMFKVGVIMQDKG--DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------C--------------CcchhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCCH
Confidence 1 1123557777888776665 48899999999999999764
No 162
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.78 E-value=4.2 Score=35.01 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRH 1151 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~ 1151 (2037)
...|+..|++++|..+|+++++..|++.+..
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 3468899999999999999999999998754
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.44 E-value=4.4 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2037)
....|...|+|++|..+|+++++..|++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566889999999999999999998864
No 164
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=3.3e+02 Score=36.14 Aligned_cols=391 Identities=18% Similarity=0.214 Sum_probs=182.7
Q ss_pred hhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhC-CCCcchHHHH
Q 000149 223 LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLD-NPHVTVRMNA 301 (2037)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~-~~n~~~~~~a 301 (2037)
+..+|+++ ......-....+..++.-++|.|.+-.-- | ++=.||+.|+ +.++.++--|
T Consensus 72 ~~~~~S~~----~~~q~~a~~~~rkllS~~~~ppi~~vi~~--G---------------~v~~lV~~l~~~~~~~lq~eA 130 (514)
T KOG0166|consen 72 LAALYSDD----PQQQLTATQAFRKLLSKERNPPIDEVIQS--G---------------VVPRLVEFLSRDDNPTLQFEA 130 (514)
T ss_pred HHHHhCCC----HHHHHHHHHHHHHHHccCCCCCHHHHHHc--C---------------cHHHHHHHHccCCChhHHHHH
Confidence 34455544 33344444455555666666665543211 2 3445888887 5558889888
Q ss_pred HHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCc-----hHHHHHHHHHHhCCCh--HHHHHhhcccccchhh
Q 000149 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-----PIMVREFAEAAFGVET--EELVKKMIPAVLPKLV 374 (2037)
Q Consensus 302 ~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~-----p~~~~~~~e~ll~~~~--~~fL~~~~~~~LP~LV 374 (2037)
---+-++|..-... ++.+....- -+.++.-+.+- .|.+-.+.. +.|=+. .+++.. ..+|+.|.
T Consensus 131 AWaLTnIAsgtse~-T~~vv~aga------vp~fi~Ll~s~~~~v~eQavWALgN-Iagds~~~Rd~vl~--~g~l~pLl 200 (514)
T KOG0166|consen 131 AWALTNIASGTSEQ-TKVVVDAGA------VPIFIQLLSSPSADVREQAVWALGN-IAGDSPDCRDYVLS--CGALDPLL 200 (514)
T ss_pred HHHHHHHhcCchhh-ccccccCCc------hHHHHHHhcCCcHHHHHHHHHHHhc-cccCChHHHHHHHh--hcchHHHH
Confidence 88888887644322 111211111 01123222221 122333332 333332 333222 23344443
Q ss_pred hccccCh---h---HHHHHHHHHHHcCCCchhHH--hhhHHHHHHHHhccccHHH---HHHHHHHHHhhcCCChHHHHHh
Q 000149 375 VSQQDND---Q---AVNIINELAKCLNTDMVPLI--VTWIPKVLAFALHQADERR---LLSALEFYCIQTGSDNQEIFAA 443 (2037)
Q Consensus 375 l~~~~~~---~---~~~~i~~ia~~~~~~~~~l~--~~~~~~Ila~ll~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~ 443 (2037)
..-..+. . +.=+|..+|+ +++-.|=+ +.-...+|.-++...+.+- +.-++.|+...+.-..+.++.+
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcr--gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCR--GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 3211111 1 2234444433 44322222 2344445555666556554 3566778876554444444443
Q ss_pred hhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHH
Q 000149 444 ALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRI 523 (2037)
Q Consensus 444 ~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl 523 (2037)
-....+.+| ++.... .-..++++.++.+.+|++....-+-. -|.+..|..-+.+++...+||+|--.|
T Consensus 279 gvv~~LV~l---L~~~~~-------~v~~PaLRaiGNIvtG~d~QTq~vi~--~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 279 GVVPRLVDL---LGHSSP-------KVVTPALRAIGNIVTGSDEQTQVVIN--SGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred cchHHHHHH---HcCCCc-------ccccHHHhhccceeeccHHHHHHHHh--cChHHHHHHHhccCcchhHHHHHHHHH
Confidence 222333344 333321 11357888888888887654322221 133444443333333345777777777
Q ss_pred HHHHHHhcc--cc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCC
Q 000149 524 EILIEMIGS--HL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2037)
Q Consensus 524 ~~li~l~g~--~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2037)
..+.. |. || ..+.|.++.+|+++ +++---=.||.+-=-+... .++.+..++++= .+-|+-+...
T Consensus 347 SNItA--G~~~qiqaVida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g-~~~qi~yLv~~g--iI~plcdlL~ 417 (514)
T KOG0166|consen 347 SNITA--GNQEQIQAVIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSG-TPEQIKYLVEQG--IIKPLCDLLT 417 (514)
T ss_pred HHhhc--CCHHHHHHHHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccC-CHHHHHHHHHcC--Cchhhhhccc
Confidence 66544 33 33 25779999988887 3333333578764222221 234454444442 1222223221
Q ss_pred CCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHH
Q 000149 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVV 676 (2037)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL 676 (2037)
-.+......+.+-++.|+. -.+..+ . +.- ..+...+.+.-| ++..+.| -.|||.++...|+
T Consensus 418 ~~D~~ii~v~Ld~l~nil~-~~e~~~----~----~~~---n~~~~~IEe~gg-ldkiE~L------Q~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 418 CPDVKIILVALDGLENILK-VGEAEK----N----RGT---NPLAIMIEEAGG-LDKIENL------QSHENEEIYKKAY 478 (514)
T ss_pred CCChHHHHHHHHHHHHHHH-HHHHhc----c----ccc---cHHHHHHHHccC-hhHHHHh------hccccHHHHHHHH
Confidence 1122223444555544422 222221 1 111 233344444444 2222222 2488988888888
Q ss_pred HHHHHHHhhc
Q 000149 677 CELSKLLKLK 686 (2037)
Q Consensus 677 ~eL~~~L~~~ 686 (2037)
+=+..|+...
T Consensus 479 ~II~~yf~~e 488 (514)
T KOG0166|consen 479 KIIDTYFSEE 488 (514)
T ss_pred HHHHHhcCCC
Confidence 8877777654
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=72.08 E-value=23 Score=43.66 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=98.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChh----HH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ----DE 1120 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~----~q 1120 (2037)
+.|..-...|.|.-||..++.. . .-+.+-....||=.+|.+|-+..........+.+ +-
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----~------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----G------------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----T------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----C------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4455566678888888887653 0 1255667889999999999999998754433322 22
Q ss_pred HHH--HHhhc--CHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1121 LLS--NKKSG--NWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1121 il~--~E~~G--~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.. .-..| ...+|.-.|+...+..+.+.....|+..|...+|+|+.........+...|.....+. -.+-++..+
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La-Nliv~~~~~ 248 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA-NLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHh
Confidence 111 12233 6899999999977776777777889999999999999876665555555554433333 346678899
Q ss_pred CCh-hhHHHHhhccc
Q 000149 1197 GRW-DLMDEYLSGAD 1210 (2037)
Q Consensus 1197 g~W-d~lee~l~~~~ 1210 (2037)
|+. +..++++.+..
T Consensus 249 gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 249 GKPTEAAERYLSQLK 263 (290)
T ss_dssp T-TCHHHHHHHHHCH
T ss_pred CCChhHHHHHHHHHH
Confidence 999 66788887654
No 166
>PTZ00429 beta-adaptin; Provisional
Probab=72.06 E-value=4.2e+02 Score=37.18 Aligned_cols=137 Identities=9% Similarity=0.001 Sum_probs=83.1
Q ss_pred cccCccchhHHHHHHHHHHHccCCchhh-----------hh-hhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000149 157 YDESSEEVQLSCVRVIRRILVHGTRDVL-----------LK-TRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2037)
Q Consensus 157 ~~~~~~~v~~~~~~~l~~il~h~~~~~~-----------~~-~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2037)
|.+...|.-+-++..|.+=|.|..+-+. +. ..+.-+.+|...+.|++..||.+|+..+..+.
T Consensus 95 ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly------ 168 (746)
T PTZ00429 95 TARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLF------ 168 (746)
T ss_pred HcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH------
Confidence 3444444445566666666666442211 11 12233467777789999999999999988854
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
... .+--....|++.+++. ..-+||.|.=..+.++-+|.......-++..-.+..|+..|...|.-......+.
T Consensus 169 ---~~~--pelv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~l 242 (746)
T PTZ00429 169 ---HDD--MQLFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILEL 242 (746)
T ss_pred ---hhC--cccccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 111 1122234577788884 4568899999999999998432211123444455668888877776666544444
Q ss_pred H
Q 000149 305 I 305 (2037)
Q Consensus 305 i 305 (2037)
+
T Consensus 243 L 243 (746)
T PTZ00429 243 L 243 (746)
T ss_pred H
Confidence 3
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.93 E-value=8.4 Score=37.77 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=27.0
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTH 1170 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~ 1170 (2037)
|-+.|+|.+|..++++ ++..|.+...+.-+-+|+.++|+|+..+..
T Consensus 35 ~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 35 YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4456666666666665 544555555554455677777777765543
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=71.89 E-value=1.1e+02 Score=40.94 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=104.8
Q ss_pred cccCCChhhHHHHHHHhhcc---cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000149 139 LNFHSDFSFLLNIYFEFLYD---ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2037)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2037)
..|=-.|+.++.--++-++| ..+..||+..|+.|+.++++..+.+. ...--|--||...+...+.+.-.++-
T Consensus 47 ~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~-----kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 47 PKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS-----KVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH-----HHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh-----HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34445677788877777666 66677999999999999999653320 01111222457777777777766666
Q ss_pred Hhh---hhhhhhhhccccc---cccchhhHHHHHHHHHHhhhc-CCh-----hHHHHHHHHHHHHHhhhcccchhHHHHH
Q 000149 216 YFL---QDTVLSSLFLDEN---ASSRSNELKLLDVIKLAFTAA-DDP-----LILETLLESTAELMMAVDVHSQHFLFLL 283 (2037)
Q Consensus 216 ~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~d~-----~i~eTll~~~~~i~~~~~~~~e~~~~~l 283 (2037)
.++ -...|.-+|+.-. .++-.-++.++..|+.-+-.. .+- ++.+-++.-+-.++. |+.+|-|.+ +
T Consensus 122 ~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~--DVTaeEF~l-~ 198 (556)
T PF05918_consen 122 SLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ--DVTAEEFEL-F 198 (556)
T ss_dssp HHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT--T--HHHHHH-H
T ss_pred HHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH--hccHHHHHH-H
Confidence 654 2223333444332 222333455555555433332 221 111222222222222 334454422 2
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHhhhh--ccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHH
Q 000149 284 ILLVEQLDNPHVTVRMNASRLIRKSCFFHL--KGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361 (2037)
Q Consensus 284 ~~Li~~L~~~n~~~~~~a~~~i~~la~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~f 361 (2037)
+-++.+|...--.-...-..+++.+..-.. -+++. .+.. -.+.+++.-=.++--+. -=|++...|
T Consensus 199 m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~--~sD~---------e~Idrli~C~~~Alp~f--s~~v~Sskf 265 (556)
T PF05918_consen 199 MSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFD--PSDP---------ESIDRLISCLRQALPFF--SRGVSSSKF 265 (556)
T ss_dssp HHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS-----SSSH---------HHHHHHHHHHHHHGGG---BTTB--HHH
T ss_pred HHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCC--CcCH---------HHHHHHHHHHHHhhHHh--cCCCChHHH
Confidence 234444444100011222334444433221 11111 0111 02222221111111111 125667899
Q ss_pred HHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh
Q 000149 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFAL 414 (2037)
Q Consensus 362 L~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll 414 (2037)
+.-+..++||.+---. +..-..+|+.+|....-.-..-....++.|+-+|+
T Consensus 266 v~y~~~kvlP~l~~l~--e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 266 VNYMCEKVLPKLSDLP--EDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHTCCCTT-------HHHHHHHHHHHHHTT----THHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhhCC--hHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 9999999999776542 11234566666664332211112234455555554
No 169
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.40 E-value=62 Score=36.80 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHH
Q 000149 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242 (2037)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (2037)
.|+.-++.+|.-++.-.+ + + -++|+.++...|.|++..||+.+-..+.+.+.+ +..+.+..-|.
T Consensus 3 ~vR~n~i~~l~DL~~r~~-~-~---ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-----------d~ik~k~~l~~ 66 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP-N-L---VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-----------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHHhCc-H-H---HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-----------CceeehhhhhH
Confidence 456666777776665544 2 1 366999999999999999999999999997622 13344433333
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCC
Q 000149 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNP 293 (2037)
Q Consensus 243 ~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~ 293 (2037)
..+ ..+ .-+|+.|++.......++.... +++.+...++-+|-+|.+.
T Consensus 67 ~~l-~~l-~D~~~~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 67 RIL-KLL-VDENPEIRSLARSFFSELLKKR--NPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHH-HHH-cCCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhCc
Confidence 333 333 4467889999999999985443 7888888888888888775
No 170
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=70.40 E-value=44 Score=43.13 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
.|---+.+..++|+...|...+-++....+ +-+.+-+|+.|-+.|+..+|+..|+..+.+.|.+-.|-.
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~--------- 412 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWD--------- 412 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHH---------
Confidence 345667889999999999999999877643 568899999999999999999999998876543211100
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~ 1501 (2037)
-..|...+.-..+++.+-+|+-+-.+|. .++++..+..|.+. ...++..|++|-+.+-
T Consensus 413 ----------~LAqay~~~g~~~~a~~A~AE~~~~~G~--~~~A~~~l~~A~~~---~~~~~~~~aR~dari~ 470 (484)
T COG4783 413 ----------LLAQAYAELGNRAEALLARAEGYALAGR--LEQAIIFLMRASQQ---VKLGFPDWARADARID 470 (484)
T ss_pred ----------HHHHHHHHhCchHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHh---ccCCcHHHHHHHHHHH
Confidence 0112222222334555555555544444 33444444444433 3345667777766664
No 171
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=70.26 E-value=3.3e+02 Score=35.31 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (2037)
+-..+-....++.-..+++......+++ ++++......+...|.++++.+..++.. |.++ ..-..+++
T Consensus 164 ~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK------~~~~-----~~l~~~l~ 232 (415)
T PF12460_consen 164 QSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNK------WPDD-----DDLDEFLD 232 (415)
T ss_pred cccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcC------CCCh-----hhHHHHHH
Confidence 3446666667777777775543334455 5777777888899999999999987622 1222 13466777
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH-HHHHHHHHhCCC
Q 000149 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF-LLILLVEQLDNP 293 (2037)
Q Consensus 244 ~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~-~l~~Li~~L~~~ 293 (2037)
.....+....++....-.++.++-|+||-..++.-... .+-.|++-|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~ 283 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP 283 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh
Confidence 77766644555556667777777777666555544433 344588888884
No 172
>PRK14574 hmsH outer membrane protein; Provisional
Probab=68.86 E-value=5.1e+02 Score=36.86 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=83.0
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc--cCChhH-HHHH
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK--SLSLQD-ELLS 1123 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~~l~~-qil~ 1123 (2037)
|.....-|.|.+|+-.+|..+...+++ .+.+-.|..+|...++++.+.-.+.... .+.... +.+.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~la 176 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTN------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLS 176 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHH
Confidence 556777899999999999987754321 2455678999999999998777765322 233222 3333
Q ss_pred HH--hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhh
Q 000149 1124 NK--KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2037)
Q Consensus 1124 ~E--~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~ 1172 (2037)
|. ..++..+|+..|+++++..|++.+.....+..|.++|-.......+.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33 35777679999999999999999988888998888888766555444
No 173
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=68.44 E-value=69 Score=36.40 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhH
Q 000149 254 DPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFD 333 (2037)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~ 333 (2037)
||.|.-++++++|+++.+. +-+.--.+-.+...|..+++.||..|..-+-.|. +.-+..++++++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li-----------~~d~ik~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLI-----------LEDMIKVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------HcCceeehhhhhH
Confidence 6889999999999997765 3444445667889999999999999999998883 3333444556655
Q ss_pred HHHHhhcCchHHHHHHHH
Q 000149 334 YLSVRLASRPIMVREFAE 351 (2037)
Q Consensus 334 ~~~~~l~~~p~~~~~~~e 351 (2037)
.+++-+.-.-..++.+|+
T Consensus 67 ~~l~~l~D~~~~Ir~~A~ 84 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLAR 84 (178)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 555666655556677775
No 174
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=67.68 E-value=15 Score=41.43 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.++..|++|+.+.+....+....+|.-|-..+....-.- -...+ .+..|.+..-+.+..++...+..++||||..+
T Consensus 46 ~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeL--L~~~f--~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaL 121 (166)
T cd00870 46 KALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALEL--LSPYF--TNPVVRKYAVSRLKLASDEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHH--cCccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 578889999988777655556678888954332100000 00000 01234455556778899999999999999999
Q ss_pred cCCChH------HHHHHHHHHHHHHHhcc---hhHHHHHHHh
Q 000149 1607 CHQNEE------IVRLVKHIITSVLRQYP---QQGLWIMAAV 1639 (2037)
Q Consensus 1607 ~h~~~~------v~~~l~~Ii~~v~~~yP---qq~lw~l~~~ 1639 (2037)
.+.... ....+...|.+-+..-| ++.+|.+.+.
T Consensus 122 KyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~E 163 (166)
T cd00870 122 KYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKVE 163 (166)
T ss_pred HhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhhh
Confidence 987641 22344444444444445 5668988654
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=66.34 E-value=17 Score=34.16 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=48.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1356 AKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
+.++.+.+.++.|..++..+...+ ++......|.++...|+..+|+..+++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467889999999999999987774 5668889999999999999999999999864
No 176
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=66.05 E-value=4.7e+02 Score=35.44 Aligned_cols=140 Identities=17% Similarity=0.292 Sum_probs=86.9
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH--
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN-- 1124 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~-- 1124 (2037)
+..+++.+.|..+|-..++-..+.... -+.+.-.--+-..+++.+.++-..+.-...++..++.||
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eH------------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEH------------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCcc------------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 345677799999999998865432111 022323333456788888887776654445666676665
Q ss_pred ----HhhcCHHHHHHHHHHHHccCCCchhhhhh--HHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1125 ----KKSGNWAEVFTSCEQALQMEPTSVQRHSD--VLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1125 ----E~~G~W~~A~~~YE~~Lq~~p~~~~~~~g--lL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
+....+.+|..||..||.-+|+|....-+ +|. -++|+++....--.-+++..|.....|..+++ |+--+|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ--~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av-s~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ--IQMRDYEGYLETRNQLLQLRPSQRASWIGFAV-AQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHH
Confidence 67889999999999999999998753221 222 24566655444334445555655555665655 3344555
Q ss_pred hhh
Q 000149 1199 WDL 1201 (2037)
Q Consensus 1199 Wd~ 1201 (2037)
...
T Consensus 159 y~~ 161 (700)
T KOG1156|consen 159 YKM 161 (700)
T ss_pred HHH
Confidence 543
No 177
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.72 E-value=98 Score=42.44 Aligned_cols=152 Identities=12% Similarity=0.130 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhH
Q 000149 255 PLILETLLESTAELMMAVDVHSQHF-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFD 333 (2037)
Q Consensus 255 ~~i~eTll~~~~~i~~~~~~~~e~~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~ 333 (2037)
-.+.|-.|.++.-|-+.. +--++ --.|---+-||+==+.-+-=+|.-.-.++|+.-..--|..+.--.-.. .+|+.
T Consensus 269 iDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL-~~lLs 345 (1051)
T KOG0168|consen 269 IDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLL-TPLLS 345 (1051)
T ss_pred hHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHH-HHHHh
Confidence 347777777777763322 11111 111222233444333444555666666777766555443322211111 23333
Q ss_pred H---------------HHHhhcCchHHHHHHHHHHhCCChHHHHHhhccccc--chhhhccccChhHHHHHHHHHHHcCC
Q 000149 334 Y---------------LSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVL--PKLVVSQQDNDQAVNIINELAKCLNT 396 (2037)
Q Consensus 334 ~---------------~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~L--P~LVl~~~~~~~~~~~i~~ia~~~~~ 396 (2037)
| ++..+..-|++.+++|. .+|+...+.-+. |.. |..+.-.-++.++...|.-.-.
T Consensus 346 ~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-------~dLi~~~~qLlsvt~t~-Ls~~~~~~vIrmls~msS~~pl 417 (1051)
T KOG0168|consen 346 YQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-------HDLITNIQQLLSVTPTI-LSNGTYTGVIRMLSLMSSGSPL 417 (1051)
T ss_pred hccchhHHHHHHHHHHHHHhcccChHHHHHHhc-------hhHHHHHHHHHhcCccc-ccccchhHHHHHHHHHccCChH
Confidence 3 77788899999999994 444444432111 222 2222222234455555443333
Q ss_pred CchhHHhhhHHHHHHHHhccc
Q 000149 397 DMVPLIVTWIPKVLAFALHQA 417 (2037)
Q Consensus 397 ~~~~l~~~~~~~Ila~ll~~~ 417 (2037)
....++..+...+|-++|..-
T Consensus 418 ~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 418 LFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHhhHHHHHHHHHhcc
Confidence 357777888888888888643
No 178
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=65.33 E-value=17 Score=37.37 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 516 QKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 516 k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
|+-+|.+|.....-+|..+..+.++|+--+...+.. ...|+.++++-.-+++... .++-+.+..||..+.....
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 566788888888888888999999999998888864 4689999999988888764 3566788999999999886
Q ss_pred cCCCCchhhHHHHHHHHHHHHH
Q 000149 594 RDKDNPSVLLNKVVKILEDLVL 615 (2037)
Q Consensus 594 ~~~~~~~~~~~~~~~il~~Li~ 615 (2037)
..++ ..+.+.++|+.|+.
T Consensus 79 D~d~----~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDE----NVRSAAELLDRLLK 96 (97)
T ss_pred CCch----hHHHHHHHHHHHhc
Confidence 3322 24677788888764
No 179
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.10 E-value=1.7e+02 Score=34.87 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=98.5
Q ss_pred hhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhcccccccc
Q 000149 155 FLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS 234 (2037)
Q Consensus 155 ~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (2037)
-+-.+++.+++..++..|+....|.. +.. ...++-|..+...+...++--.-+.+..+. +.++..-
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~---~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw---------~~~~r~f 73 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCV---PPVLQTLVSLVEQGSLELRYVALRLLTLLW---------KANDRHF 73 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cch---hHHHHHHHHHHcCCchhHHHHHHHHHHHHH---------HhCchHH
Confidence 36778899999999999999999973 222 224566666766666666444444444433 2221100
Q ss_pred chhhHHHHHH-HHHHhhhcCChhHHHHHHH----HHHHHHhhhcccchhHHHHHHH-HHHHh-CCCCcchHHHHHHHHHH
Q 000149 235 RSNELKLLDV-IKLAFTAADDPLILETLLE----STAELMMAVDVHSQHFLFLLIL-LVEQL-DNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 235 ~~~~~~~~~~-~~~~~~~~~d~~i~eTll~----~~~~i~~~~~~~~e~~~~~l~~-Li~~L-~~~n~~~~~~a~~~i~~ 307 (2037)
..-+.++.. ..++-....+.+..-.+.. ++..|+....- ....++. +-..| ++.+..+++.|..-|-.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 111223322 1121222222222222322 66777654322 3333333 55566 89999999999999999
Q ss_pred HHhhhhccCcccccchhhhhhhhhhHHHHHhh--cCchHHHHHHHHHHhC
Q 000149 308 SCFFHLKGGCELLVSKAVLICNELFDYLSVRL--ASRPIMVREFAEAAFG 355 (2037)
Q Consensus 308 la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l--~~~p~~~~~~~e~ll~ 355 (2037)
+|+..-...| -.|.-+.++| ..||.+++.+|+ +++
T Consensus 149 Lc~~~vvd~~------------s~w~vl~~~l~~~~rp~v~~~l~~-l~~ 185 (234)
T PF12530_consen 149 LCEAEVVDFY------------SAWKVLQKKLSLDYRPLVLKSLCS-LFA 185 (234)
T ss_pred HHHHhhccHH------------HHHHHHHHhcCCccchHHHHHHHH-HHH
Confidence 9976655433 2234455555 799999999997 554
No 180
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=65.07 E-value=1.3e+02 Score=37.55 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHH----HHHh--ccCC--
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGL----ARLH--KSLS-- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi----~~~r--~~~~-- 1116 (2037)
+.+..+...|.+.+|+-++|+.+...+.. ...+.. ...|..+++.++.... .... ..+.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------------~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRD------------LLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW 114 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------HHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH
Confidence 45678889999999999999987653211 011111 2223333322222211 1110 0111
Q ss_pred --hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh---hhhhHhHHHHH
Q 000149 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ---YKKTWCMQGVQ 1191 (2037)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~---~~~~l~~~~~E 1191 (2037)
.......++..|++++|...++++++..|++...+..+-.++.+.|+++....+.+......|. ......-....
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 1123346789999999999999999999999877777778899999999888777655443321 11111112334
Q ss_pred HHHhcCChhhHHHHhhcc
Q 000149 1192 AAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1192 AAWrlg~Wd~lee~l~~~ 1209 (2037)
..-..|+++....++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 195 FYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 556788888877776653
No 181
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=64.65 E-value=37 Score=33.12 Aligned_cols=79 Identities=13% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 196 EFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 196 ~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
+.+..|++..||..++..+..+ .....+..+.+.+ .-+|+.|+...+.++|+|+...
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~-------------------~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~--- 62 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGEL-------------------GDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPE--- 62 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCC-------------------THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHc-------------------CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHH---
Confidence 3455899999999998887741 1224466666766 5588999999999999984322
Q ss_pred chhHHHHHHHHHHHhCCC-CcchHHHHHH
Q 000149 276 SQHFLFLLILLVEQLDNP-HVTVRMNASR 303 (2037)
Q Consensus 276 ~e~~~~~l~~Li~~L~~~-n~~~~~~a~~ 303 (2037)
++-.|++.|.++ +..+|..|..
T Consensus 63 ------~~~~L~~~l~~~~~~~vr~~a~~ 85 (88)
T PF13646_consen 63 ------AIPALIKLLQDDDDEVVREAAAE 85 (88)
T ss_dssp ------THHHHHHHHTC-SSHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCCcHHHHHHHHh
Confidence 555677777775 4556777654
No 182
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=63.79 E-value=61 Score=39.19 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCc
Q 000149 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGC 317 (2037)
Q Consensus 240 ~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~ 317 (2037)
.-|.++-..+...+||-|+|-.+.+.|... +-+..-++. - -++-.+...|..|++-+|..|.+-+.++|-..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~----- 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND----- 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-----
Confidence 345788888888999999999999999962 222222222 1 23455778889999999999999999884332
Q ss_pred ccccchhhhhhhhhhH-HHHHhhcCchH-HHHHHH--HHHhCCChHH----HHHhhcccccchhhhccccChhHHHHHHH
Q 000149 318 ELLVSKAVLICNELFD-YLSVRLASRPI-MVREFA--EAAFGVETEE----LVKKMIPAVLPKLVVSQQDNDQAVNIINE 389 (2037)
Q Consensus 318 ~l~~~~~~~~~~~l~~-~~~~~l~~~p~-~~~~~~--e~ll~~~~~~----fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ 389 (2037)
.....| +.|- .+.+.+.+.|- +--+++ ..|..|++.+ .+....++.++ |..+.... .-..+++-
T Consensus 86 ----en~~~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~-LL~~G~~~-~k~~vLk~ 157 (254)
T PF04826_consen 86 ----ENQEQI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS-LLSSGSEK-TKVQVLKV 157 (254)
T ss_pred ----hhHHHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH-HHHcCChH-HHHHHHHH
Confidence 111111 2222 26666666551 111122 3466777644 44444444432 22222211 11234444
Q ss_pred HHHHc-CCC-chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHHh
Q 000149 390 LAKCL-NTD-MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCI 431 (2037)
Q Consensus 390 ia~~~-~~~-~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~ 431 (2037)
+...- +.+ .+.++....+.-+--||... +++.+..+|.++.+
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred HHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 43321 112 35555544444444455443 34556666665544
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.54 E-value=9.8 Score=35.34 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1359 CRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+.+.|.++.|...+.++.+.. ++.+.+..|+++...|+.++|...|+..+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357899999999999987664 567889999999999999999999998765
No 184
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=62.70 E-value=5.9e+02 Score=35.46 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhh-hhhhhHHHHHhhcCc-hHHHHHHHHHHhCCChH
Q 000149 282 LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLI-CNELFDYLSVRLASR-PIMVREFAEAAFGVETE 359 (2037)
Q Consensus 282 ~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~l~~~-p~~~~~~~e~ll~~~~~ 359 (2037)
++..|+..|.+.|.-+..+|..-|.+|+-+. ..+..| ...+-+.+++-+.+. +.+.+.....|+.+|-+
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~---------ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFK---------ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD 361 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC
Confidence 3456889999999999999999999985442 222111 123345566666643 44555544566777764
Q ss_pred HHHH-hh-cccccchhhhccccChh---HHHHHHHHHHHcCCCchhHHh--hhHHHHHHHHhccccH
Q 000149 360 ELVK-KM-IPAVLPKLVVSQQDNDQ---AVNIINELAKCLNTDMVPLIV--TWIPKVLAFALHQADE 419 (2037)
Q Consensus 360 ~fL~-~~-~~~~LP~LVl~~~~~~~---~~~~i~~ia~~~~~~~~~l~~--~~~~~Ila~ll~~~~~ 419 (2037)
.=++ .| ..-++|+||-.-+.+.. +..++..|+. ...-+.++. +.+|.+.-.++...++
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~--dd~~r~~f~~TdcIp~L~~~Ll~~~~~ 426 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSM--DDEARSMFAYTDCIPQLMQMLLENSEE 426 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhcc--CHhhHHHHhhcchHHHHHHHHHhCCCc
Confidence 4333 33 24477999875433222 3455555532 223455553 5677776666664443
No 185
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=62.18 E-value=39 Score=38.83 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.++..+++|+...+........++|.-|-.......-.- -+..+.+ ..|....-+.+..+|......++||||..+
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~L--L~~~f~~--~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALEL--LSPNFPD--PFVRQYAVRRLESLSDEELLFYLPQLVQAL 120 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHC--TSTT-----HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHH--HHhhccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 466778888887766555566677777844321000000 0001111 335555556788999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhc
Q 000149 1607 CHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAVSKSTIPSRREAAAEIIQAAKKG 1661 (2037)
Q Consensus 1607 ~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~ 1661 (2037)
.+..... ..+...|.+-+..-| ++.+|.+.+-. ..+.-..+...|++.+-..
T Consensus 121 r~e~~~~-s~L~~fLl~ra~~s~~ia~~l~W~L~~e~--~~~~~~~r~~~~~~~~l~~ 175 (184)
T PF00613_consen 121 RYEPYHD-SPLARFLLRRALKSPRIAHQLFWYLKAEL--HDPEYSERYQLLLEAFLDG 175 (184)
T ss_dssp GGSSSSS--HHHHHHHHHHHHSHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHH
T ss_pred eeccccc-cHHHHHHHHHHHhCHHHHHHHHHHHHHhc--cCccHHHHHHHHHHHHHHH
Confidence 8873332 334444444444444 67799998776 3334455566666665443
No 186
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=61.42 E-value=4.2e+02 Score=33.26 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------------hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--------------NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
..+..+...+++++--+-|....+.+.|..+..+++. .-.+|.|+-.-.+++..+++..=+..+++
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3344567889999999999999999999988776543 12566666666677777777776666665
Q ss_pred CC
Q 000149 1411 KP 1412 (2037)
Q Consensus 1411 ~~ 1412 (2037)
.|
T Consensus 299 ep 300 (504)
T KOG0624|consen 299 EP 300 (504)
T ss_pred CC
Confidence 43
No 187
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=60.79 E-value=33 Score=35.05 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=65.6
Q ss_pred HhhcccHHHHHHHHHHHhHhhhh--hhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 198 LLLNKRKAIRDAFCTQIGYFLQD--TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
++.+++..+|..++..+..+-.+ .....+ .+..++..+...+.. +|+.+++..+-+++.|.......
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----------~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAV----------VEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH----------HHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHH
Confidence 34788888999999888886522 111111 112445555554443 68899999999999994322222
Q ss_pred chhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHH
Q 000149 276 SQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSC 309 (2037)
Q Consensus 276 ~e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la 309 (2037)
.+.+.- .+-.|++.|+..+.-++..|..-+.++|
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222222 3556889999998888888888887775
No 188
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=60.52 E-value=42 Score=38.13 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.++..+++|+...+......+..+|.-|-..+....-.- -+..+ ....|.+.--+.+..+|.......+||||..+
T Consensus 39 ~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeL--L~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaL 114 (171)
T cd00872 39 QALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALEL--LDCNF--PDEHVREFAVRCLEKLSDDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH--CCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 588889999998887666667788888944332100000 00000 01234444445678899999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 000149 1607 CHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAVSKSTIPSRREAAAEIIQA 1657 (2037)
Q Consensus 1607 ~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS~~~~R~~~a~~Il~~ 1657 (2037)
.+..-.-..+..-+|.| +..-| ++.+|.+.+.... +.-+.|...|++.
T Consensus 115 KyE~~~ds~La~FLl~R-al~n~~igh~lfW~L~~E~~~--~~~~~R~~~~le~ 165 (171)
T cd00872 115 KYEPYHDSDLVRFLLKR-ALRNQRIGHFFFWHLRSEMHN--PSVSQRFGLLLEA 165 (171)
T ss_pred HcccccCCHHHHHHHHH-HhcCHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHH
Confidence 88642212333333333 33334 6678999776533 2333444445543
No 189
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.35 E-value=1.2e+02 Score=32.69 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChh
Q 000149 1039 SAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ 1118 (2037)
Q Consensus 1039 ~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~ 1118 (2037)
..+|++-+..+-.+++...-.+.|||..+.... . .......|.++|+..+..+.+.=+-......+++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~----------~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~ 73 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS--E----------NPALQTKLIELYAKYDPQKEIERLDNKSNHYDIE 73 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--c----------chhHHHHHHHHHHHHCHHHHHHHHHhccccCCHH
Confidence 456666666666778899999999999876421 1 2246789999999987776665544233446676
Q ss_pred HHHHHHHhhcCHHHHHHHHHH
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQ 1139 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~ 1139 (2037)
.-+..-+..|.|+.|.-.|.+
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 666666888889988888874
No 190
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=60.29 E-value=4.3e+02 Score=33.10 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=121.1
Q ss_pred cchHHHHH-HHHHHh-cCCCcch-hhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc-cCCCCchhhHHHHHHHHH
Q 000149 536 TYVPKILV-LLMHAI-NKESLQC-EGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE-RDKDNPSVLLNKVVKILE 611 (2037)
Q Consensus 536 ~~~pqI~a-~L~saL-~~~~L~~-~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~-~~~~~~~~~~~~~~~il~ 611 (2037)
.+.|.++. .|...- ..|+.|+ ..+++-..+|..+.+.-...+..+++.+|-..++.+. .+.+.| .++..-.++++
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yP-e~r~~ff~LL~ 145 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYP-EHRVNFFKLLR 145 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhCh-HHHHHHHHHHH
Confidence 56677665 344333 2455554 4678888899998765456777888888888888885 343444 46777777887
Q ss_pred HHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH---
Q 000149 612 DLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE--- 688 (2037)
Q Consensus 612 ~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~--- 688 (2037)
.++..+-..+- .||. + ..+.-+....-+++|.+.+|...||+-|..++.+-..
T Consensus 146 ~i~~~~f~~l~-------~lp~--~---------------~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 146 AINEHCFPALL-------QLPP--E---------------QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHHTHHHH-------HS-H--H---------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHhHHHHH-------cCCH--H---------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 77666433221 1221 0 1123344556788899999999999999999886543
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHH
Q 000149 689 DVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFEL 768 (2037)
Q Consensus 689 ~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~F~~~l 768 (2037)
+.......... .+++..+...|.|...++.-. .+...+ .. ++.-++.+.+..+... -...+.+|+...
T Consensus 202 ~~~~~F~~~y~--~~il~~if~vltD~~Hk~gf~---~q~~iL-~~---Lf~~ve~~~i~~~l~~---~~~~n~~~v~~~ 269 (319)
T PF08767_consen 202 EFANQFYQQYY--LDILQDIFSVLTDSDHKSGFK---LQSQIL-SN---LFRLVESGSIQVPLFD---PGMSNQEFVSEY 269 (319)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHSTT-GGGHH---HHHHHH-HH---HHHHHHTT-SSSSSSS---TTT-HHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCcccHHHHH---HHHHHH-HH---HHHHHHcccccccccC---CCCccHHHHHHH
Confidence 11111111000 146677777777776553211 111111 11 1222222233221111 123455688888
Q ss_pred HHHHHHHHHHcCCChhhHhHHHHHHHHHHHH
Q 000149 769 IDKHLARAFRAAPDTIIQDSAALAIQELLKI 799 (2037)
Q Consensus 769 l~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~ 799 (2037)
+.+.|..+|---+......| ++.+.+.
T Consensus 270 i~~~L~~~Fp~l~~~qi~~f----v~~Lf~~ 296 (319)
T PF08767_consen 270 IANLLSEAFPNLSPKQIENF----VQGLFEL 296 (319)
T ss_dssp HHHHHHHH-TTS-HHHHHHH----HHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHH----HHHHHHh
Confidence 88888888844444433333 3555554
No 191
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=59.50 E-value=1.7e+02 Score=37.03 Aligned_cols=143 Identities=16% Similarity=0.222 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHHHHHh-cc-------ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcch-hhHH-
Q 000149 512 DLSLQKQALKRIEILIEMI-GS-------HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSST-KHVI- 581 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~-g~-------~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l-~~ll- 581 (2037)
+++.||.+-.-...+++.- |+ ++..-+|+|+.+|..+-+.++....|=..-+.+++. +.+ ..+|
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~------e~l~~~iL~ 162 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH------ESLAKIILY 162 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS------HHHHHHHHT
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh------HHHHHHHhC
Confidence 5777777766666666653 33 344567999999999999887554444444444432 222 1122
Q ss_pred HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
+..|..+..|++.. .-.....|...|+.|+..|+....+++. . ....-+..+.
T Consensus 163 ~~~f~~ff~~~~~~---~Fdiasdaf~t~~~llt~hk~~~a~fl~-----------~-------------n~d~ff~~~~ 215 (335)
T PF08569_consen 163 SECFWKFFKYVQLP---NFDIASDAFSTFKELLTRHKKLVAEFLS-----------N-------------NYDRFFQKYN 215 (335)
T ss_dssp SGGGGGHHHHTTSS---SHHHHHHHHHHHHHHHHSSHHHHHHHHH-----------H-------------THHHHHHHHH
T ss_pred cHHHHHHHHHhcCC---ccHhHHHHHHHHHHHHhccHHHHHHHHH-----------H-------------HHHHHHHHHH
Confidence 33334444444311 1234567888999999999988876661 1 2233455667
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcH
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
.-++++|=-.+.|+|+=|.++|..+.
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHSGG
T ss_pred HHccCCCeEeehhhHHHHHHHHHchh
Confidence 77888887779999999999997654
No 192
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=58.94 E-value=6.2e+02 Score=34.45 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.|++-+.+-+.+|..+.-..-+.+|-... .+-+-+=+||..|..|+...|..+|.++++.+|..- .+ -+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse----ei-wlaa 624 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE----EI-WLAA 624 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH----HH-HHHH
Confidence 5679999999998888776555455554442 345666799999999999999999999987543110 00 0000
Q ss_pred cCCCCCCCCCccccc-ccchhhhhH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1427 LSLVPLNPLPVLSNT-QTLNEKRDI---------AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~-q~~~~~~~~---------Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
..+ ...+ |...-..+. +|++.+.+.+....+ ..+++++...++++.+|.+.|-|..+|+-
T Consensus 625 vKl--------e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld--~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 625 VKL--------EFENDELERARDLLAKARSISGTERVWMKSANLERYLD--NVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred HHH--------hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh--hHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 000 0001 110000111 222333333333333 37888888899999999999999999987
Q ss_pred hHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHH
Q 000149 1497 CDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVN 1576 (2037)
Q Consensus 1497 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~ 1576 (2037)
++..- .+..|=..|..+++.-+. .+-||+..+....+. ...
T Consensus 695 ~e~~~----------------------~ie~aR~aY~~G~k~cP~--------~ipLWllLakleEk~---------~~~ 735 (913)
T KOG0495|consen 695 EEQME----------------------NIEMAREAYLQGTKKCPN--------SIPLWLLLAKLEEKD---------GQL 735 (913)
T ss_pred HHHHH----------------------HHHHHHHHHHhccccCCC--------CchHHHHHHHHHHHh---------cch
Confidence 65331 233567778887765443 233777655321111 011
Q ss_pred HHHHHHHHhhcCCCC--chhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhH-HHHHHHhhcCCcHHHHHHH
Q 000149 1577 GKVMSIMRGCLKDLP--AYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG-LWIMAAVSKSTIPSRREAA 1651 (2037)
Q Consensus 1577 ~~i~~~~~~~~~~lP--~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~-lw~l~~~~kS~~~~R~~~a 1651 (2037)
.+-..++++..-+=| ...|+. -+=.-+.+.| .+....++.+..+..|... ||.=.-- --..+.|+...
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle---~Ir~ElR~gn---~~~a~~lmakALQecp~sg~LWaEaI~-le~~~~rkTks 806 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLE---SIRMELRAGN---KEQAELLMAKALQECPSSGLLWAEAIW-LEPRPQRKTKS 806 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHH---HHHHHHHcCC---HHHHHHHHHHHHHhCCccchhHHHHHH-hccCcccchHH
Confidence 112233444433333 334443 3334445556 4667888999999999876 5644322 22444554443
No 193
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.71 E-value=17 Score=37.02 Aligned_cols=76 Identities=26% Similarity=0.287 Sum_probs=55.2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHH
Q 000149 655 DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCAD 734 (2037)
Q Consensus 655 ~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~ 734 (2037)
+.++..+..+++..+.||-+||..|++++.++. +... -+..++.-++..-.+. ++=|=+.|-+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---------~~~~---~~~~il~l~l~~L~d~-----DsyVYL~aI~ 65 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---------EPVI---DIPKILDLFLSQLKDE-----DSYVYLNAIK 65 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---------cchh---hHHHHHHHHHHHcCCC-----CchHHHHHHH
Confidence 457777888888889999999999999998876 1111 1345555555444443 2457788899
Q ss_pred hhcccCccCcccc
Q 000149 735 CLGALGAVDPAKV 747 (2037)
Q Consensus 735 CLG~IGalDp~r~ 747 (2037)
||..++-.+|+++
T Consensus 66 ~L~~La~~~p~~v 78 (92)
T PF10363_consen 66 GLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHHChHHH
Confidence 9999999999854
No 194
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.62 E-value=1.1e+02 Score=40.04 Aligned_cols=142 Identities=17% Similarity=0.234 Sum_probs=88.5
Q ss_pred HHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHHhh
Q 000149 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKS 1127 (2037)
Q Consensus 1048 ~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~ 1127 (2037)
.+=.+-+.|.-|+.|++.-..+.+. | +.+..|.+.=..+.+-+...=+-... ......+.-++=+.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt---~----------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT---P----------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC---H----------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhc
Confidence 3334448899999999886554321 1 22333333222222222211110000 01122346677899
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH
Q 000149 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2037)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee 1204 (2037)
|+|..|...|..++...|++.....+.--|+.+||++...+.-++.-..-.|.|.+.+.. ...|--.+-+|+...+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R-Kg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR-KGAALRAMKEYDKALE 447 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888899999999998887777666667776654332 2344445666766544
No 195
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=58.54 E-value=1e+02 Score=34.48 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...+..+...+......|.++.|.....++....+ +.+....|.++...|+.++|+..+++++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999998875532 24677788999999999999999999876
No 196
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=58.05 E-value=11 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHc
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQ 1142 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq 1142 (2037)
...|++.|+|++|.++|+++|.
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3468899999999999999663
No 197
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=57.78 E-value=11 Score=49.32 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=27.5
Q ss_pred HHHHHHH--HHHHhccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1919 TTAVWSM--VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1919 SlAv~Sm--vgYILgLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
+||+=|+ +||| =-|-.|+||||| ..|+|=-.|||.|-
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILID-rdGHIKLTDFGLCT 777 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILID-RDGHIKLTDFGLCT 777 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEc-cCCceeeeeccccc
Confidence 4555554 2333 348889999999 59999999999884
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=57.76 E-value=1.2e+02 Score=39.25 Aligned_cols=108 Identities=13% Similarity=0.243 Sum_probs=78.1
Q ss_pred hchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHH--HhccC----ChhHHHHHHH
Q 000149 1052 RCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR--LHKSL----SLQDELLSNK 1125 (2037)
Q Consensus 1052 ~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~--~r~~~----~l~~qil~~E 1125 (2037)
..+.|..|+-.+|...... | +..-.|.++|-..++..-+.-+.. ....+ -+..|+--+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~-----p----------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-----P----------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-----C----------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3467999999999964321 2 244568888877776543333322 11111 2444666677
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
+.|+.+.|+.+..++.+..|++...-..+.+|+..+|+|+..+.-.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8999999999999999999999988788999999999999887766653
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=57.60 E-value=1.8e+02 Score=35.48 Aligned_cols=150 Identities=10% Similarity=0.137 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHHhh-cCHHHHHHHHHHHHccCC--Cch----hhhhhHHHHHH
Q 000149 1087 EDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKS-GNWAEVFTSCEQALQMEP--TSV----QRHSDVLNCLL 1159 (2037)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~-G~W~~A~~~YE~~Lq~~p--~~~----~~~~glL~CL~ 1159 (2037)
+.++.-.++|...|+++....+.... ...||.. |++++|..+|+++++... ++. .....+-.++.
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l--------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL--------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH--------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 45677788899999998887775532 2346777 999999999999976321 111 11123445566
Q ss_pred hccChHHHHHHhhhhhcc-----chhhh-hhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHH-HHHH
Q 000149 1160 NMCHLQAMVTHVDGLISR-----IPQYK-KTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKI 1232 (2037)
Q Consensus 1160 ~Lgq~~~ll~~~~gl~~~-----~p~~~-~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~-l~ka 1232 (2037)
.+|+|+......+.+... ...+. ++...-++=+--..|+....++.+....... +.=..+-+.. +..+
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-----~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-----PSFASSREYKFLEDL 241 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-----TTSTTSHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCcHHHHHHHHH
Confidence 788998777666544321 11221 1111122224444667655555555433210 0001122222 4556
Q ss_pred HHHHHcCCcchHHHHHH
Q 000149 1233 LQAMMKKDHFSVSDKIG 1249 (2037)
Q Consensus 1233 Llal~~~d~~~f~~~I~ 1249 (2037)
+.|+.++|.+.|.+.|.
T Consensus 242 ~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHTT-CCCHHHHCH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 77888999999998765
No 200
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.43 E-value=11 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS 1147 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~ 1147 (2037)
....+.+.|+|++|...|+..+...|++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456788999999999999999998874
No 201
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.36 E-value=1.1e+02 Score=40.99 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=87.1
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh---hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchh
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL---LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN 237 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~---~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (2037)
-.||+.|.|.++.++.-... +.-++|++||+ +|....||.-+=-++..+-.+ ...
T Consensus 386 f~EVR~AAV~Sl~~La~ssP--------~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--------------l~i 443 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATSSP--------GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--------------LAI 443 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------------hee
Confidence 35799999999998776544 33567999987 999999999998888875411 234
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
++..++.+...+.+.. +.|.|.+.+-++.. .-..-|.+..++..|+..|+.. |.=|---|.=+-.+.+.|
T Consensus 444 ~eeql~~il~~L~D~s-~dvRe~l~elL~~~---~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 444 REEQLRQILESLEDRS-VDVREALRELLKNA---RVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNH 513 (823)
T ss_pred cHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccC
Confidence 4556666666666554 45999999988873 4457788888999999999887 333332333333444444
No 202
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=56.39 E-value=23 Score=31.81 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhH
Q 000149 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGY 216 (2037)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~ 216 (2037)
+|+-+...+|.++..+.... ...-..+-+.+|..+|.|++..||.++|.++..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777888888866555433 222334556777788899999999999998864
No 203
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.35 E-value=13 Score=42.30 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHH-hccccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000149 515 LQKQALKRIEILIEM-IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2037)
Q Consensus 515 ~k~~~l~sl~~li~l-~g~~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2037)
.+--|..++.+|++. .|..|-+++||++.=|+.||+ +++.-..++++-..+|..-+.++ ++|.|+.-|+.
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~aLvPyyrqLL 126 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-EALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHH
Confidence 445788999999999 444799999999999999997 56666777777777766644433 33444444443
No 204
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=56.28 E-value=2.1e+02 Score=31.88 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh
Q 000149 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT 1464 (2037)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s 1464 (2037)
...+..++..|+..+|+..++.++.-.+ . ....+.++.-+|.-+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~-------------------~--------------~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI-------------------D--------------PYDRSYILYNIGLIHTSN 85 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc-------------------c--------------chhhHHHHHHHHHHHHHc
Confidence 3457778888999999999998875210 0 001234566666666666
Q ss_pred CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1465 GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1465 ~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|+ .+++++.|.+|.+++|....+|..+|..|-.+-.... ..|.. .....+...++..|.+++...+..
T Consensus 86 g~--~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~-------~~g~~-~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 86 GE--HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI-------EQGDS-EIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred CC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH-------HcccH-HHHHHHHHHHHHHHHHHHHhCccc
Confidence 65 7899999999999999999999999877653321110 01111 112345567788888888766653
No 205
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.00 E-value=6.4e+02 Score=33.74 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=134.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+-.+-.-+++.+-....+..++..|-+.+...=-|-||-++|.-..|...+..+....|...-.|...|+-=- .+|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-MIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-HhcCcH
Confidence 3345677889999999999999999887654444569999999998888888888888877666766654321 248888
Q ss_pred hHHHHhhcccccCccccCCCCCcch---HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNASF---DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~~f---~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
..+.|++.+.. .+..| ..++|-++-...++|+.. ...-..+|.-.+..+.. +.-+ ++.
T Consensus 330 eARry~SKat~---------lD~~fgpaWl~fghsfa~e~EhdQAm-aaY~tAarl~~G~hlP~-----LYlg----mey 390 (611)
T KOG1173|consen 330 EARRYFSKATT---------LDPTFGPAWLAFGHSFAGEGEHDQAM-AAYFTAARLMPGCHLPS-----LYLG----MEY 390 (611)
T ss_pred HHHHHHHHHhh---------cCccccHHHHHHhHHhhhcchHHHHH-HHHHHHHHhccCCcchH-----HHHH----HHH
Confidence 88999887543 12222 234454443322222211 11111122211111110 0000 111
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChH--------------HHHHHHHHHH---HHhhhccCChhhhhhhHHHHHhhcC
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDL--------------KFSKLMANWE---NRLKYTQPSLWAREPLLAFRRMVFG 1340 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~W~---~RL~~~~~~~~~~e~lLslRr~v~~ 1340 (2037)
+...-++.+..++.+.- ...+.++ ...+-.+-.+ .+.+-+.+....|+|
T Consensus 391 ~~t~n~kLAe~Ff~~A~----ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p---------- 456 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQAL----AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP---------- 456 (611)
T ss_pred HHhccHHHHHHHHHHHH----hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH----------
Confidence 11211222112111000 0000110 0111111111 222222222223443
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1341 ASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1341 ~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+|...++++||-|.++.|.....+|..+.+.+ ..---|=+.-..|.-+.||..+++++.
T Consensus 457 ----------~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 457 ----------TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ----------HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 57899999999999999999999987776443 333334455567999999999998875
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.58 E-value=36 Score=36.27 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCChhhHHHHHHHhhcccCccchhHH-HHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 142 HSDFSFLLNIYFEFLYDESSEEVQLS-CVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~v~~~-~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
+-||--++. +.++|-+ +.++.++| +.-.|..+.+|.+....+-....--..|+.||.|+|..||.-|=.+++.+|
T Consensus 39 ~~~~~llk~-L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 39 ENNFELLKK-LIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp SGGGHHHHH-HHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHH-HHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 335555555 6677733 33555555 445789999998854222222334458999999999999999999999987
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=55.46 E-value=3e+02 Score=33.57 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCh---HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAPN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
.++..-+-|..-|.+|.++.|-.+..+|... +.+. -.++.|=..+.+++..+|+..+++++.-..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~-------- 105 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYR-------- 105 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--------
Confidence 3445556666666666666666666655322 2211 123334444566688999999999875210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccchH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
........|+++..+|+.+... + +.+.+++.|++|.++...-.
T Consensus 106 ----------------------~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 106 ----------------------EAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp ----------------------HCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------hcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCC
Confidence 0012235689999999988665 4 49999999999999876544
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=55.35 E-value=41 Score=32.17 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH
Q 000149 1384 HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY 1463 (2037)
Q Consensus 1384 ~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~ 1463 (2037)
....|.+++..|+.++|+..++++++- . . +...+.+.+|.++..+|.-...
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~-~-~---------------------------~~~~~~~~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI-E-E---------------------------QLGDDHPDTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-H-H---------------------------HTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-H-H---------------------------HHCCCCHHHHHHHHHHHHHHHH
Confidence 345688889999999999999988762 0 0 0011334668889999998888
Q ss_pred hCCCCHHHHHHHHHHHHHhc
Q 000149 1464 TGQKQKEDVITLYSRVRELQ 1483 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~ 1483 (2037)
.|+ .+++.+.|++|.++.
T Consensus 59 ~g~--~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 59 LGD--YEEALEYYQKALDIF 76 (78)
T ss_dssp TTH--HHHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHhhh
Confidence 776 888888999888774
No 209
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.17 E-value=47 Score=35.00 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC
Q 000149 1386 EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG 1465 (2037)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~ 1465 (2037)
|.|+=+|.+|+|.+|+..+++.+.... +.. ....-.+.-+.++..+|+=.+...
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~-----~~~---------------------~~~~lh~~QG~if~~lA~~ten~d 54 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHG-----EDE---------------------SSWLLHRLQGTIFYKLAKKTENPD 54 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHcc-----CCC---------------------chHHHHHHHhHHHHHHHHhccCch
Confidence 468889999999999999999886432 110 000011122334444443322111
Q ss_pred C--CCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1466 Q--KQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1466 ~--~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
- ..--..+..|++++.+.|.+..+.|.+|+.
T Consensus 55 ~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 55 VKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 0 011234578999999999999999988754
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=54.93 E-value=29 Score=44.78 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhh---hhhHHHHHHhccChHHHHHHhhhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQR---HSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~---~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
..|.+.|++++|+++|+++|+..|++.+. +..+=-|+..+|+.+..+...+..
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999999998754 567777899999998877666543
No 211
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=53.55 E-value=2.1e+02 Score=39.87 Aligned_cols=252 Identities=17% Similarity=0.093 Sum_probs=144.9
Q ss_pred hhhcccchhhhhhhhhhchhhhhhhcC----cc-chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000149 10 DLALRDEFDEVRAEAVISLPVIVMWSG----LG-VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2037)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2037)
-.-+.|+-+|+|.+++.-..-+-.+-+ +. ..+..+..+.-+..+...-|+...+.....++=+.|.-+.+...-
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~ll- 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELL- 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccC-
Confidence 344778889999999988888888877 22 236778899999999999999999988777766666222222111
Q ss_pred cccccccccccccccccHHhhh---hcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCc
Q 000149 85 NACKLLLNVEDDILSQTVDYLL---ENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESS 161 (2037)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (2037)
.+|+.....+.+.-..++. .-..|--|-.|+ ....+.. -+..-.+--|. +
T Consensus 440 ---p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~-------------------~~~s~sl----Lp~i~el~~d~-~ 492 (759)
T KOG0211|consen 440 ---PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI-------------------STVSNSL----LPAIVELAEDL-L 492 (759)
T ss_pred ---hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc-------------------hhhhhhh----hhhhhhhccch-h
Confidence 1222212222222222222 333333333332 1111111 11122222222 7
Q ss_pred cchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHH
Q 000149 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (2037)
.+|+-++++.++..+.-......-..+.+- |..++ .|...++|.|+.+.++.++ ..|+ +.+.....+
T Consensus 493 wRvr~ail~~ip~la~q~~~~~~~~~~~~l--~~~~l-~d~v~~Ir~~aa~~l~~l~------~~~G----~~w~~~~~i 559 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQLGVEFFDEKLAEL--LRTWL-PDHVYSIREAAARNLPALV------ETFG----SEWARLEEI 559 (759)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHHHH--HHhhh-hhhHHHHHHHHHHHhHHHH------HHhC----cchhHHHhh
Confidence 889999999999988776522221222223 65555 8999999999999999965 3443 112222222
Q ss_pred HHHHHHHhhhcC--ChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHHhCCCCcchHHHHHHHHHHH
Q 000149 242 LDVIKLAFTAAD--DPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 242 ~~~~~~~~~~~~--d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.+-+.... +.-..-|++-++..+ +..-+.|++.--|.- +.+-...+.+.||-.|-..+..+
T Consensus 560 ----~k~L~~~~q~~y~~R~t~l~si~~l--a~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 560 ----PKLLAMDLQDNYLVRMTTLFSIHEL--AEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred ----HHHHHHhcCcccchhhHHHHHHHHH--HHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 22222222 355667777777766 333355555433333 44455778889998887776666
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=52.87 E-value=55 Score=41.51 Aligned_cols=119 Identities=15% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhh--HHHHH--HhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSD--VLNCL--LNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~g--lL~CL--~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
..-+.|++.+|-+||-.+|+.+|++...... +=+|+ ..||+....+.-.+..++-.+++-+ -...+.+|--.+++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik-all~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK-ALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH-HHHHHHHHHHHHHH
Confidence 3458999999999999999999998753211 11232 3468877665555544333343332 23457788888999
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHH
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIG 1249 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~ 1249 (2037)
|+.--++...+-+. +.+......+.++-.+|++....+-...+-
T Consensus 337 ~e~AV~d~~~a~q~-------~~s~e~r~~l~~A~~aLkkSkRkd~ykilG 380 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL-------EKDCEIRRTLREAQLALKKSKRKDWYKILG 380 (486)
T ss_pred HHHHHHHHHHHHhh-------ccccchHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 98776666554321 122345666778888887544444444433
No 213
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=51.79 E-value=37 Score=40.19 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=21.2
Q ss_pred hccCCCCCCceeEecCCCcEEEeecccc
Q 000149 1930 VGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1930 LgLGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
+-=||=||+||+++ .+| +.=|||+++
T Consensus 155 ~~HgD~~~~Nii~~-~~~-~~iIDwe~a 180 (226)
T TIGR02172 155 CLHGDFQIGNLITS-GKG-TYWIDLGDF 180 (226)
T ss_pred eEecCCCCCcEEEc-CCC-cEEEechhc
Confidence 34689999999998 466 889999765
No 214
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=51.79 E-value=61 Score=33.35 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhcccchhHHHHHHH-HHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhc
Q 000149 262 LESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLA 340 (2037)
Q Consensus 262 l~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~ 340 (2037)
|+.++.++.+-....+-..--++. ++..++.+++-||=.|+.-+.++++..... +..++ ++||+.+.+.+.
T Consensus 7 li~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f----~~IF~~L~kl~~ 78 (97)
T PF12755_consen 7 LIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYF----NEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHc
Confidence 455666544443333333333333 889999999999999999999999888652 33455 699999999877
Q ss_pred CchHHHHHHHH
Q 000149 341 SRPIMVREFAE 351 (2037)
Q Consensus 341 ~~p~~~~~~~e 351 (2037)
---.-++.-|+
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 66566777776
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=51.70 E-value=56 Score=40.61 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=62.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHH-------HHH-------
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSG-------LAR------- 1110 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~G-------i~~------- 1110 (2037)
.++.|=.--+-|.|||-|||.-++--....++-- +-..+-.|-++|+++.|.|-..= +.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAML------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 3677777778999999999998775543322211 12346688999999988875322 211
Q ss_pred --HhccCChhHHHHHHHhhcCHHHHHHHHHHHHc
Q 000149 1111 --LHKSLSLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2037)
Q Consensus 1111 --~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2037)
..+...+-+-...++..|+..+|++|.|.+.+
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 11123344556778999999999999998865
No 216
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.46 E-value=3e+02 Score=36.08 Aligned_cols=212 Identities=14% Similarity=0.171 Sum_probs=106.3
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHh----c---CCCcchhh
Q 000149 486 EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI----N---KESLQCEG 558 (2037)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL----~---~~~L~~~~ 558 (2037)
+++..|+++=+-++.+-++..-. .+=...++++.+++-+++..+.++.+.|+..|...+ . +|.+-...
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s-----~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGS-----AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-S-----TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCC-----ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 34445555444444444432111 112467888888888888777766666555555444 3 46688889
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccC-CCCchhhHHHHHHHHHHHHHHhH-HHHHhhcccC-C-----C
Q 000149 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERD-KDNPSVLLNKVVKILEDLVLKNR-AILKQHIHEF-P-----L 630 (2037)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~-~~~~~~~~~~~~~il~~Li~~n~-~~L~~~i~~l-p-----~ 630 (2037)
|++-..+|+...+..|+.+..+-+.+|..+..-++.. .|+ .--+..||-+|+.-+. ..+.+.+..| | .
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF----~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF----IPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT----HHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc
Confidence 9999999998654344433333343333333333211 233 2457788888877766 4444443333 1 1
Q ss_pred ----CCCchhhHH-HHHHHHHhcCCC----CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC
Q 000149 631 ----LPSIAALTE-VNKAIQEARGPM----TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD 701 (2037)
Q Consensus 631 ----Lp~ip~L~~-v~~~l~~~r~~~----~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~ 701 (2037)
-..+|.+.+ +.+.++...... .+..-|..|-+-+++... -.+|..=|...+..-..+.-
T Consensus 169 lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l---------- 236 (435)
T PF03378_consen 169 LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEAL---------- 236 (435)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHH----------
T ss_pred hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHH----------
Confidence 234777765 344454432221 233445555555554432 24455444444333322100
Q ss_pred chhHHHHHHHHHHHhhh
Q 000149 702 LDVLSTLISSLLRGCAE 718 (2037)
Q Consensus 702 ~~vi~~Lv~sLL~~c~~ 718 (2037)
.+.+.+++..|+.-.+.
T Consensus 237 ~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 237 EPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 14566667766665544
No 217
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.05 E-value=2.1e+02 Score=39.63 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHHHHHHHhc-----c-ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH--H
Q 000149 512 DLSLQKQALKRIEILIEMIG-----S-HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS--Q 583 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g-----~-~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~--~ 583 (2037)
|...+-+++.-|.+|+-|+. + .|.+++|-+.+.|++-.+ .++...|++|..-++..| |.+.+.++. .
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-~DIMl~AcRaltyl~evl----P~S~a~vV~~~a 255 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-FDIMLLACRALTYLCEVL----PRSSAIVVDEHA 255 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhc----cchhheeecccc
Confidence 66677888888888887762 2 577889999999987663 678888888877777765 444543333 2
Q ss_pred H---HHHh--hhhcccCCCCchhhHHHHHHHHHHHHHHhH-HHH-----HhhcccCCCCCCchhhHHHHHHH---HHhcC
Q 000149 584 V---FAAL--IPFLERDKDNPSVLLNKVVKILEDLVLKNR-AIL-----KQHIHEFPLLPSIAALTEVNKAI---QEARG 649 (2037)
Q Consensus 584 i---~~~l--ip~~~~~~~~~~~~~~~~~~il~~Li~~n~-~~L-----~~~i~~lp~Lp~ip~L~~v~~~l---~~~r~ 649 (2037)
| ...| |.|++ ..+|+..-|++|=.+|. +.| ..++..+.||.-.-.=..+.-+. +..+.
T Consensus 256 IPvl~~kL~~IeyiD--------vAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 256 IPVLLEKLLTIEYID--------VAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred hHHHHHhhhhhhhhH--------HHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 2222 34444 45788999999888764 333 34455555654321111111111 12222
Q ss_pred --CCCHHHHHHHHHhhccCCChhHHHHHHH
Q 000149 650 --PMTLKDQLLAAVDGLNHENLNVRYMVVC 677 (2037)
Q Consensus 650 --~~~l~~~l~~~~~rl~~en~~Vr~~aL~ 677 (2037)
.-.+.+.+..+...++++...+++.+.-
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~i 357 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCI 357 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 1235677888888888777666554433
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=51.02 E-value=37 Score=36.82 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
-.+...|+|+.|..++++++..+|.+-..+..+|+|+...|+....+...+.
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999877665544
No 219
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=1.3e+02 Score=38.30 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=68.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
+=+...+.-+.|.|||.|-|..|+-...+ ++.|+ +.| ...
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~---------------~~ali-----------lKG--------------~lL 344 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRN---------------HEALI-----------LKG--------------RLL 344 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCccc---------------chHHH-----------hcc--------------HHH
Confidence 34556778899999999999999753221 11111 111 123
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
.+.||-++|.-.|..+....|..++.+.|++.|++..|........++......|+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 47788889998898888888999999999999999999988766666654444443
No 220
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.80 E-value=61 Score=38.51 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=58.9
Q ss_pred hCCChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHH--------ccCCCchhhh----------hhHHHHHH
Q 000149 1098 FLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQAL--------QMEPTSVQRH----------SDVLNCLL 1159 (2037)
Q Consensus 1098 ~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~L--------q~~p~~~~~~----------~glL~CL~ 1159 (2037)
+|+|.|-+..+...+ +..-..-+.|++.+|.++|-.|+ .+.|.+.+++ +++-.|++
T Consensus 168 qlsddeKmkav~~l~------q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 168 QLSDDEKMKAVPVLH------QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred cCCchHhhhhhHHHH------HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh
Confidence 466777666665543 33445568899999999987773 4567655432 46778999
Q ss_pred hccChHHHHHHhhhhhccchhhhhh
Q 000149 1160 NMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1160 ~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
.-|.|..++.+...++...|...+.
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999998888865543
No 221
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=50.78 E-value=1.7e+02 Score=36.92 Aligned_cols=94 Identities=18% Similarity=0.363 Sum_probs=62.8
Q ss_pred hHHHHHHhhhcCCC-CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHH------HHhccccccch--HHHH
Q 000149 472 PRVIRKVSTVLTGN-EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILI------EMIGSHLTTYV--PKIL 542 (2037)
Q Consensus 472 ~~~~~~~~~~~~~~-~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li------~l~g~~v~~~~--pqI~ 542 (2037)
.+|+...-..++.. ...+.||..|+=.....++ +++.++..-.|+++|+=||+++ ++|-.+|+... --||
T Consensus 182 sdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M 260 (335)
T PF08569_consen 182 SDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMM 260 (335)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHH
Confidence 46666666555553 5678999999988888776 5667777778999999999987 45555555432 2233
Q ss_pred HHHHHHhcCCCcchhhhHHHHHHHHH
Q 000149 543 VLLMHAINKESLQCEGLSVLHFFIEQ 568 (2037)
Q Consensus 543 a~L~saL~~~~L~~~~l~~W~~fv~~ 568 (2037)
-.|++ ..+.++..||.+..+||.+
T Consensus 261 ~lL~d--~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 261 NLLRD--KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHhcC--cchhhhHHHHHHHHHHHhC
Confidence 33332 2445788888888888886
No 222
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=50.17 E-value=1.5e+02 Score=39.67 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH
Q 000149 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2037)
Q Consensus 1380 ~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak 1459 (2037)
.|.+....|-....+|++++|...+++++.-. + .+.++.++|+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------------------------------------p-s~~a~~~lG~ 461 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE------------------------------------M-SWLNYVLLGK 461 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------C-CHHHHHHHHH
Confidence 34445445556667899999999999987621 1 1558999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1460 WIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1460 wl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
.+...|+ .++++..|.+|+.++|..+.
T Consensus 462 ~~~~~G~--~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 462 VYELKGD--NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence 9999887 89999999999999998774
No 223
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.15 E-value=9.8e+02 Score=34.12 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=72.5
Q ss_pred HHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc---------CChhHH
Q 000149 1050 SFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---------LSLQDE 1120 (2037)
Q Consensus 1050 A~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~---------~~l~~q 1120 (2037)
.....+|-.|+..+-..+.+.. .|| ..+..|+.-|-.=++...+.-+.-..-. .+--+-
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~--~nP----------~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENN--ENP----------VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcC--CCc----------HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3344667777777766554432 233 3455666666555555555444321111 122345
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCc-hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS-VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~-~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
...|...|++++|-.+|-.+++..|++ +-.+.|+-.=+...|.+....-..+.+....|.....
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 677889999999999999999999998 4344555554455555554444445555555544433
No 224
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=49.80 E-value=25 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=20.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 194 CIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
++-.++.|++..||.+++..+..+.+
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34456799999999999999998763
No 225
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=49.05 E-value=2.5e+02 Score=34.76 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=88.4
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch
Q 000149 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ 277 (2037)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e 277 (2037)
.+.+++.+||+.+-+.++.+- ++. +..-...+..+.+++ ..+++.|+.|.+-++.++.... +.+
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~-------Lld------~~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~--g~~ 98 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCC-------LLD------KELAKEHLPLFLQAL-QKDDEEVKITALKALFDLLLTH--GID 98 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHH-------HhC------hHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHc--Cch
Confidence 458999999999988877752 222 223345566677777 5568889999999999985432 212
Q ss_pred hH------------HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHH
Q 000149 278 HF------------LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM 345 (2037)
Q Consensus 278 ~~------------~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~ 345 (2037)
.+ ...+=.|..+|.+.|+-++.+|..=+.+|--+ .+.. + .|.+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~----------~~i~-------~--------~~~v 153 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS----------GRIS-------D--------PPKV 153 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----------CCCC-------c--------HHHH
Confidence 11 22334588899999999999999888887222 1111 1 2333
Q ss_pred HHHHHHHHhCCCh--HHHHHhhcccccchhhhcccc
Q 000149 346 VREFAEAAFGVET--EELVKKMIPAVLPKLVVSQQD 379 (2037)
Q Consensus 346 ~~~~~e~ll~~~~--~~fL~~~~~~~LP~LVl~~~~ 379 (2037)
+..+--.-+.-.+ ++-|+.++.+.+|...-.+..
T Consensus 154 L~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 154 LSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 3332211111122 347888888888988877653
No 226
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=48.17 E-value=1.1e+02 Score=38.57 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHHhhccc-CccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcc--cHHHHHHHHHHHhHhh
Q 000149 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNK--RKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~--~r~vR~a~~~~~~~~~ 218 (2037)
++..-.|.. .+++--.++++.|.+++.++...........|-+.+-+++.++ ...||.++...+...+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY 234 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344445555 8888999999999999999885533233467889889999999 9999999999998865
No 227
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=47.98 E-value=57 Score=36.36 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccc---cCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHH
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQR---AGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLV 1603 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLi 1603 (2037)
.++.-+++++...+......+-.+|.-|-..+....- .+.-.+ ..|.+..-+.+...|.......+||||
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~-------~~vr~yAv~~L~~~~~~~l~~ylpQLV 111 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPD-------PVVRQYAVRVLESASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCC-------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4677778888876666666677888888433221000 000011 234444445678899999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHh
Q 000149 1604 SRICHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAV 1639 (2037)
Q Consensus 1604 SRI~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~ 1639 (2037)
..+.+.... ...+...|.+-+...| ++.+|.+.+.
T Consensus 112 QaLkye~~~-~~~L~~fLl~ra~~s~~~~~~l~W~L~~e 149 (152)
T cd00864 112 QALKYEPYL-DSYLARFLLERALKSQRLGHQLYWNLKSE 149 (152)
T ss_pred HHHhccccC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999876532 2445555555555555 6678998654
No 228
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.76 E-value=3.9e+02 Score=34.84 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc-CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQAS-GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~-~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
.++|+++|+.--|+|....|...-..|... ++ .-+++.+|+.--.+.++++|--.-+-+++.+|.
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk---------- 276 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK---------- 276 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------
Confidence 578999999999999999998887777543 32 235677777766677778877777777665431
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh---CC-CCHHHHH-----HHHHHHHHhccchHHHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT---GQ-KQKEDVI-----TLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s---~~-~~~~~i~-----~~Y~~A~~l~~~weK~~~~la 1494 (2037)
.++..|+.++.+-- |. ...++++ -+|.+-+.-+|.-..+||.+=
T Consensus 277 ---------------------------~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 277 ---------------------------GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 33455666665422 22 2234444 357778888887777777542
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc-hhhhHHHHHHHhhhcCc
Q 000149 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN-LFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1495 ~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~-~~q~lpRlLtLWl~~g~ 1559 (2037)
+. . ++ .| ....+.+-|-+|+...+.. --..--|-+-||.+++-
T Consensus 330 rL----~-e~---------~g--------~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 330 RL----E-ES---------VG--------DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred HH----H-Hh---------cC--------CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 21 1 11 01 1124677788888765542 11345689999999864
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=47.74 E-value=17 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=27.6
Q ss_pred HHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000149 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2037)
Q Consensus 1136 ~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~l 1167 (2037)
||+++++..|++......+=.++.+.|+++..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 58999999999999887777788899998864
No 230
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.72 E-value=2e+02 Score=34.24 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
.-..|+-.|.+.-+-|..+.|...--+|.++.+.+ +.=-+-=+|..+|+.++|.+.++.+++.
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------------- 132 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------------- 132 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC---------------
Confidence 35679999999999999999999999998876544 3335777899999999999999999763
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la 1494 (2037)
|..+.. ++.+.-+|---...|+ .+.....|+++++++|+..-+...++
T Consensus 133 -----P~Y~~~--------------s~t~eN~G~Cal~~gq--~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 133 -----PAYGEP--------------SDTLENLGLCALKAGQ--FDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred -----CCCCCc--------------chhhhhhHHHHhhcCC--chhHHHHHHHHHHhCcCCChHHHHHH
Confidence 111111 1122222222223333 66777889999999998765555554
No 231
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.18 E-value=1.2e+02 Score=35.31 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=54.4
Q ss_pred HHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCC
Q 000149 1388 AKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQK 1467 (2037)
Q Consensus 1388 AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~ 1467 (2037)
..=+++.|+..+|...-+.+|.-.|.- + + ...+.--...|-+++++++|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~-------------------~----~-e~rsIly~Nraaa~iKl~k~e------ 151 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPST-------------------S----T-EERSILYSNRAAALIKLRKWE------ 151 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccc-------------------c----H-HHHHHHHhhhHHHHHHhhhHH------
Confidence 344677899999999988888743311 0 0 000111113477888999994
Q ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1468 QKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1468 ~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
.+++...+|++++|+++|+...-|.-|.+.
T Consensus 152 ---~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 152 ---SAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred ---HHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 456778899999999999988777766554
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=46.66 E-value=21 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPT 1146 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~ 1146 (2037)
....|.+.|++++|..+|+++++..|+
T Consensus 7 lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345688999999999999999998874
No 233
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=46.49 E-value=13 Score=49.20 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.7
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=+|=||+||+++ ..|+++-+|||.+
T Consensus 288 HaDpHpGNi~v~-~~g~i~~lDfGi~ 312 (517)
T COG0661 288 HADPHPGNILVR-SDGRIVLLDFGIV 312 (517)
T ss_pred ccCCCccceEEe-cCCcEEEEcCcce
Confidence 479999999999 5799999999986
No 234
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.43 E-value=1.5e+02 Score=40.29 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
|..+|+-|+.... ..+ +.+..+++||..+|.+.+.+||.-+++++.-.- . +-.-.-.=.+.
T Consensus 223 qlViVE~Irkv~~-~~p----~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---------~-----~p~alk~Aa~~ 283 (948)
T KOG1058|consen 223 QLVIVELIRKVCL-ANP----AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---------N-----DPTALKAAAST 283 (948)
T ss_pred HHHHHHHHHHHHh-cCH----HHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---------C-----CHHHHHHHHHH
Confidence 3445555555544 221 236789999999999999999988877776522 1 11111111223
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccch
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~ 323 (2037)
+.+.+..-.|.-++--.|.-+.++ + ...|-...-|+. .+.-|..|+.-+|..++...+.|+.+|+.
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l-~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--------- 350 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSEL-K---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--------- 350 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHH-h---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH---------
Confidence 333333444444666666666665 2 234444455555 78889999999999999999999666643
Q ss_pred hhhhhhhhhHHHHHhhc
Q 000149 324 AVLICNELFDYLSVRLA 340 (2037)
Q Consensus 324 ~~~~~~~l~~~~~~~l~ 340 (2037)
+++..++-|.+.
T Consensus 351 -----ediv~~Lkke~~ 362 (948)
T KOG1058|consen 351 -----EDIVQFLKKEVM 362 (948)
T ss_pred -----HHHHHHHHHHHH
Confidence 466677777665
No 235
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=46.21 E-value=1.5e+02 Score=40.15 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=101.9
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHH
Q 000149 486 EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFF 565 (2037)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~f 565 (2037)
...+.|++++|+-++.++.. +.-++..+|.+-.+.|-+-++..-.- ..+-+|.-.|.++++..+-....+---..+
T Consensus 243 ~~~~gff~n~fvd~~~fLee--l~lks~~eK~~Ff~~L~~~l~~~pe~--i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~ 318 (690)
T KOG1243|consen 243 RLLGGFFRNDFVDTLLFLEE--LRLKSVEEKQKFFSGLIDRLDNFPEE--IIASKVLPILLAALEFGDAASDFLTPLFKL 318 (690)
T ss_pred HhccccccchHHHHHHHHHh--cccCcHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhhccccchhhhhHHHHh
Confidence 45689999999999999865 33356677776666655544433221 123334444555554433112222222223
Q ss_pred HHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHH
Q 000149 566 IEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQ 645 (2037)
Q Consensus 566 v~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~ 645 (2037)
.+-|+. ++ +-..++..+++++...+ +..=..+|.|+ +.+-+++
T Consensus 319 ~k~ld~---~e---yq~~i~p~l~kLF~~~D------r~iR~~LL~~i-----~~~i~~L-------------------- 361 (690)
T KOG1243|consen 319 GKDLDE---EE---YQVRIIPVLLKLFKSPD------RQIRLLLLQYI-----EKYIDHL-------------------- 361 (690)
T ss_pred hhhccc---cc---cccchhhhHHHHhcCcc------hHHHHHHHHhH-----HHHhhhc--------------------
Confidence 344433 11 12223333444443221 11112233322 2111111
Q ss_pred HhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccch
Q 000149 646 EARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVG 725 (2037)
Q Consensus 646 ~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~ 725 (2037)
.+..-...-+.+++-++.+.|+.+|.++++-+..+-. +.|+.. +=.+|++.|-++-.+ ..
T Consensus 362 --t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~---------kL~~~~----Ln~Ellr~~ar~q~d-----~~ 421 (690)
T KOG1243|consen 362 --TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP---------KLSKRN----LNGELLRYLARLQPD-----EH 421 (690)
T ss_pred --CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh---------hhchhh----hcHHHHHHHHhhCcc-----cc
Confidence 1111113457889999999999999999887765432 222210 112444444333221 12
Q ss_pred hhHHHHHHHhhcccCccC-ccc
Q 000149 726 QKLKLVCADCLGALGAVD-PAK 746 (2037)
Q Consensus 726 ~~I~~lca~CLG~IGalD-p~r 746 (2037)
..|+.--.-|||.||..+ |+.
T Consensus 422 ~~irtntticlgki~~~l~~~~ 443 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASV 443 (690)
T ss_pred Ccccccceeeecccccccchhh
Confidence 368888889999999985 544
No 236
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=46.06 E-value=14 Score=42.29 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred cCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
=+|=||+|||++ +|++.=||||++-
T Consensus 141 HrDlkP~NIll~--~~~~~liDFG~a~ 165 (190)
T cd05145 141 HGDLSEYNILYH--DGKPYIIDVSQAV 165 (190)
T ss_pred cCCCChhhEEEE--CCCEEEEEcccce
Confidence 379999999998 7999999999874
No 237
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=45.66 E-value=2.2e+02 Score=34.43 Aligned_cols=150 Identities=14% Similarity=0.054 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
..+. .++++.-+-.|.-+.+..++-++....+. .+.-+++|.+-..|+...|+..++++..-.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------- 130 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------- 130 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------------
Confidence 3444 77888888888888888887775444333 355559999999999999999999875411
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
|. -++++-.+|--+++.|+ .+++...|.+|.++.+.-.+..-.+|..|. + +
T Consensus 131 -----p~-----------------d~~~~~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~--L---~ 181 (257)
T COG5010 131 -----PT-----------------DWEAWNLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSLL--L---R 181 (257)
T ss_pred -----CC-----------------ChhhhhHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHHH--H---c
Confidence 11 16677888888888887 788999999999999988877777775542 1 1
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccC--CcchhhhHHHHHHHhhhcC
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG--HKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g--~~~~~q~lpRlLtLWl~~g 1558 (2037)
.+ ...|..-.+++-..+ +.-+.+.+.++..+|=+++
T Consensus 182 gd-----------------~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 182 GD-----------------LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred CC-----------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 00 012222222222223 3457899999999995544
No 238
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=45.48 E-value=1.5e+02 Score=40.40 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=96.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil 1122 (2037)
..+++.+=+.||.-..|+-.+|.-. .++..+.=|..+++.+.++-|.+....-+ .-.+
T Consensus 401 q~~laell~slGitksAl~I~Erle--------------------mw~~vi~CY~~lg~~~kaeei~~q~lek~--~d~~ 458 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE--------------------MWDPVILCYLLLGQHGKAEEINRQELEKD--PDPR 458 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH--------------------HHHHHHHHHHHhcccchHHHHHHHHhcCC--Ccch
Confidence 3688999999999999999999842 35667788999998888888876443311 2346
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
+|-..|+-..=++|||++.+.... +...|-.+=.-...-++++....+.++-..-+|-.-..|+..+. |||.+++|..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~-~ALqlek~q~ 537 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGC-AALQLEKEQA 537 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccH-HHHHHhhhHH
Confidence 799999999999999999874432 22222111111223466777777777655555544455655554 7899999976
Q ss_pred HHHHhh
Q 000149 1202 MDEYLS 1207 (2037)
Q Consensus 1202 lee~l~ 1207 (2037)
--+...
T Consensus 538 av~aF~ 543 (777)
T KOG1128|consen 538 AVKAFH 543 (777)
T ss_pred HHHHHH
Confidence 555433
No 239
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.21 E-value=92 Score=35.66 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1469 ~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.+++++.|.+|+.++|+.-.+++.||.=|-.+-.-.. ......+|-..|..||-+|....+++
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~-----------d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP-----------DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4678899999999999999999999964433321100 01112246678999999999887764
No 240
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=45.01 E-value=19 Score=42.60 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC
Q 000149 1919 TTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE 1965 (2037)
Q Consensus 1919 SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~ 1965 (2037)
.+.-|+++=+++.=.|||++|||..+ +|+++-||=|++|...+++.
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~klr 179 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKLR 179 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCccc
Confidence 46678899999999999999999985 99999999999998865553
No 241
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.91 E-value=3.4e+02 Score=34.75 Aligned_cols=95 Identities=9% Similarity=0.066 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHH--HhccCChhHHHH----HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH
Q 000149 1086 DEDVSFLMEIYSFLDEPDGLSGLAR--LHKSLSLQDELL----SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL 1159 (2037)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDg~~Gi~~--~r~~~~l~~qil----~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~ 1159 (2037)
...+..|.++|-+=+|.-...-..- .|-.+.--+-|- .|--...|++|..++|++--..|+...+|+-+-.|++
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 3568899999988777665444421 222232222222 2456678999999999998888999999999999999
Q ss_pred hccChHHHHHHhhhhhccchh
Q 000149 1160 NMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1160 ~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
..|.|+..++.-+......|+
T Consensus 672 rsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hcccHHHHHHHHHHHHHhCcc
Confidence 999999887766666555664
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.89 E-value=2.5e+02 Score=30.90 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=51.0
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++. .+-..++.++.+.+|++|-|+.|.+.||.=|..+.+.....+|.-+.+.
T Consensus 17 ~dw~~ileicD~In~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~ 80 (139)
T cd03567 17 EDWEAIQAFCEQINK--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF 80 (139)
T ss_pred CCHHHHHHHHHHHHc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH
Confidence 555555566666653 2346789999999999999999999999999999999888788766544
No 243
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=44.80 E-value=13 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCCCCCceeEecCCCcEEEeeccccc
Q 000149 1933 GDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1933 GDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
||=+|+|||++ +|++.=||||+.-
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~ 165 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSV 165 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEccccc
Confidence 89999999998 5999999999764
No 244
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=44.59 E-value=9.9e+02 Score=32.61 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhccCChhhhhhhHHHHHhhc--CCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----
Q 000149 1310 LMANWENRLKYTQPSLWAREPLLAFRRMVF--GASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN----- 1382 (2037)
Q Consensus 1310 l~~~W~~RL~~~~~~~~~~e~lLslRr~v~--~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~----- 1382 (2037)
....|-.|.++..++.. +.+...-.++. .+.......+.+|..+|++-..+|.++.|.-...+|-..+-+.
T Consensus 348 nV~eW~kRV~l~e~~~~--~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAA--EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhhhhcCChH--HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 56789999998887543 23333334443 2333455678899999999999999999999999987655332
Q ss_pred -HHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1383 -VHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1383 -~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+-++.|..-......+.|+..++.+.
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 33444444333344678888888774
No 245
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=44.28 E-value=23 Score=29.00 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.8
Q ss_pred HHHHHHhccchHHHHHHHHhhhHH
Q 000149 1476 YSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1476 Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
|++|++++|+...+|+.+|..|..
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH
Confidence 889999999999999999988753
No 246
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=43.20 E-value=41 Score=30.23 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 670 NVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 670 ~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
.||..|+.-|..+.....+.+. +.+.+++..|+.+..+. +++++..++.|||.|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~-----------~~~~~~~~~L~~~L~d~-----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQ-----------PYLPELLPALIPLLQDD-----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHH-----------HHHHHHHHHHHHHTTSS-----SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHH-----------HHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHhcC
Confidence 5777787777764444444333 35667777777665442 248999999999975
No 247
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=58 Score=42.52 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=68.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
.+|...--..|++++|..+|-.+++.+|.|-....+--.|+..+|+|+..+.-+..-..-.|+|.+.+...++. +--+|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa-~~~lg 84 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA-LFGLG 84 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH-HHhcc
Confidence 34555566899999999999999999999877677888999999999988776666556689999988877764 45689
Q ss_pred ChhhHH
Q 000149 1198 RWDLMD 1203 (2037)
Q Consensus 1198 ~Wd~le 1203 (2037)
+++.-.
T Consensus 85 ~~~eA~ 90 (539)
T KOG0548|consen 85 DYEEAI 90 (539)
T ss_pred cHHHHH
Confidence 987653
No 248
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=42.24 E-value=42 Score=41.40 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccCh-HHHHHHhhhhhccch
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHL-QAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~-~~ll~~~~gl~~~~p 1179 (2037)
-+...|...|+|++|.+..+.+++.+|.+.+...+++.|..-+|.. +....+...+....|
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3456678999999999999999999999999989999999999998 555555555554444
No 249
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=42.05 E-value=2.8e+02 Score=33.75 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHhccCCCCCCceeEecCCCcEEEeecccc
Q 000149 1928 HIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1928 YILgLGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
+.+-=||-||+||+++. +|-+.-|||+.+
T Consensus 175 ~~l~HgD~~~~Nil~~~-~~~~~iIDfe~a 203 (296)
T cd05153 175 RGVIHADLFRDNVLFDG-DELSGVIDFYFA 203 (296)
T ss_pred CcCCccCcCcccEEEeC-CceEEEeehhhh
Confidence 44556999999999983 444568999653
No 250
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.59 E-value=2.2e+02 Score=40.89 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=100.5
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhh--hhhHHH-HHHHHHhhc-ccHHHHHHHHHHHhHhhh--hh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLK--TRSEWI-KCIEFLLLN-KRKAIRDAFCTQIGYFLQ--DT 221 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~--~~~~w~-~~~~~~~~~-~~r~vR~a~~~~~~~~~~--~~ 221 (2037)
.-+ ||=.|+..+...||.+.+..|-++|.--..-...+ -+-+++ =.|..|+.| ..-.||.||++.|+.+-. ..
T Consensus 463 VlP-Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLP-YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHH-HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 344 67778888999999999999999987654211111 233444 477778888 888999999998877520 00
Q ss_pred hhhhh--------cccccc---c-cchh--hHHHHHHHH---HHhhhcCChhHHHHHHHHHHHHHh---hhcccchhHHH
Q 000149 222 VLSSL--------FLDENA---S-SRSN--ELKLLDVIK---LAFTAADDPLILETLLESTAELMM---AVDVHSQHFLF 281 (2037)
Q Consensus 222 ~~~~~--------~~~~~~---~-~~~~--~~~~~~~~~---~~~~~~~d~~i~eTll~~~~~i~~---~~~~~~e~~~~ 281 (2037)
-+... +.+.+. . ...+ .......+. ..|....+|-|+.|||++++.++. ..- ..+ +
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k-sND---~ 617 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK-SND---V 617 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-ccc---c
Confidence 00011 111111 0 1111 122333333 334445667799999999999873 221 112 2
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 282 LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 282 ~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
.|=.|+.||--....+|+.=|.-|.-+|-+-
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 4556899999999999999999999886554
No 251
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=40.83 E-value=2.8e+02 Score=33.27 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C---hHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--P---NVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2037)
.+.+..-|..+-+.|.++.|......+...-+ + .+.+.-|..+...|+..+|+...++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34577889999999999999999888765432 2 234677778899999999999999998754
No 252
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.71 E-value=1.4e+02 Score=36.27 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=58.9
Q ss_pred ChHHHHHHHHH-HHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLL-WSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2037)
Q Consensus 1381 p~~~iE~AKLL-W~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak 1459 (2037)
.....+.|.-+ .++|+..+|+..++..++..|.. ...+.++..+|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---------------------------------~~a~~A~y~LG~ 188 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---------------------------------TYQPNANYWLGQ 188 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------------------------cchHHHHHHHHH
Confidence 35666777655 56799999999999998754311 122456777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccch---HHHHHHHHhhhH
Q 000149 1460 WIHYTGQKQKEDVITLYSRVRELQPMW---EKGYFYMAKYCD 1498 (2037)
Q Consensus 1460 wl~~s~~~~~~~i~~~Y~~A~~l~~~w---eK~~~~la~y~d 1498 (2037)
-+-..|+ .++++..|+.+++.+|.. ..+++.+|..|.
T Consensus 189 ~y~~~g~--~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 189 LNYNKGK--KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHcCC--HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 6655554 788999999999998874 556777776654
No 253
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=40.57 E-value=1.4e+02 Score=33.96 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=63.4
Q ss_pred HHHHHHHHHhc-cCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhh
Q 000149 1527 DVLLFYAKGLH-RGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2037)
Q Consensus 1527 ~ai~~Yl~sl~-~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSR 1605 (2037)
.|+..+++|+. .+.+...+ +..+|.-|-..+....-.- -...+. ...|.+.--+.+..+|....+..+||||..
T Consensus 39 ~aLp~~L~s~~~w~~~~~~e-~~~LL~~W~p~~p~~ALeL--L~~~f~--d~~VR~yAV~~L~~~~ddeL~~yLpQLVQa 113 (169)
T cd00869 39 NALPLVLASAPSWDWANLMD-VYQLLHQWAPLRPLIALEL--LLPKFP--DQEVRAHAVQWLARLSNDELLDYLPQLVQA 113 (169)
T ss_pred HHHHHHHHhcccCcHHHHHH-HHHHHhCCCCCCHHHHHHH--cCCcCC--ChHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57778888763 44443333 5667777844332100000 000000 122444444568889999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHh--cchhHHHHHHHhhcC
Q 000149 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKS 1642 (2037)
Q Consensus 1606 I~h~~~~v~~~l~~Ii~~v~~~--yPqq~lw~l~~~~kS 1642 (2037)
+.+....-..+..-||.+...+ .-++.+|.+.+....
T Consensus 114 LkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~ 152 (169)
T cd00869 114 LKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDD 152 (169)
T ss_pred HHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccC
Confidence 9987632233444444443332 336779999876644
No 254
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.16 E-value=2.9e+02 Score=29.98 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 650 PMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 650 ~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
....++.++.+.+|++|.|+.|.+.||.=|..+.+.....++.-+.+.
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 456789999999999999999999999999999999887777766543
No 255
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=40.04 E-value=1.1e+03 Score=31.73 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhcc
Q 000149 492 LRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSR 571 (2037)
Q Consensus 492 l~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~ 571 (2037)
+...-+-+++++.+.+.+..+.+-|+-++.+|..+|+. .|+-++.++...+.||.--
T Consensus 406 Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---------------------~p~skEraLe~LC~fIEDc-- 462 (898)
T COG5240 406 FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---------------------DPDSKERALEVLCTFIEDC-- 462 (898)
T ss_pred CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---------------------CchHHHHHHHHHHHHHhhc--
Confidence 45556677788887777766778889899999988876 4555666666666666531
Q ss_pred CCCcchhhHHHHHHHHhhhhcccCC---CCchhhHHHHHHHHHHHHHHhHH
Q 000149 572 VSPSSTKHVISQVFAALIPFLERDK---DNPSVLLNKVVKILEDLVLKNRA 619 (2037)
Q Consensus 572 ~~~~~l~~ll~~i~~~lip~~~~~~---~~~~~~~~~~~~il~~Li~~n~~ 619 (2037)
+. .+|.+-++..+.+.. ..| ..-+..|++-++.||.-
T Consensus 463 ----ey----~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 463 ----EY----HQITVRILGILGREGPRAKTP---GKYVRHIYNRLILENNI 502 (898)
T ss_pred ----ch----hHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhH
Confidence 12 334444444442211 123 25688999999999863
No 256
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=39.76 E-value=99 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.++.++...|.+-+..|+++.|.....+|.+. ++. .....-|.++...|+.++|++.++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46788999999999999999999988887543 322 1344567788899999999999998865
No 257
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=6e+02 Score=34.00 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC----CChHHH--HHHHHHHHcCCchHHHHHHHHHh
Q 000149 1335 RRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG----APNVHM--EKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1335 Rr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~----~p~~~i--E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
||-.-....++..-|..||-+++.---.|-.++|..|...|.++= -|...+ |+-+ ++....|=+...+++
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~----t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR----TNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH----hccHHHHHHHHHHHH
Confidence 554444556777889999999999999999999999999887651 344332 3332 344555555555554
Q ss_pred h
Q 000149 1409 L 1409 (2037)
Q Consensus 1409 ~ 1409 (2037)
.
T Consensus 408 a 408 (611)
T KOG1173|consen 408 A 408 (611)
T ss_pred h
Confidence 4
No 258
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=39.06 E-value=23 Score=38.96 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=24.7
Q ss_pred HHHhccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1927 GHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1927 gYILgLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
.+.+-=||=||+|||++ .|++.-|||+++-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 44555699999999998 6889999998753
No 259
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=38.72 E-value=2.5e+02 Score=31.67 Aligned_cols=89 Identities=19% Similarity=0.365 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc-------cccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHH
Q 000149 496 FVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH-------LTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQ 568 (2037)
Q Consensus 496 ~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~-------v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~ 568 (2037)
+=+++..++. +++...++.++..+..|+..+++. .++.+|++...|..-++.+.....++++...++..
T Consensus 69 ~~~Ll~~L~~----~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 69 LRALLSILEK----PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555543 456778899999999999999774 23455565555555555567788888888888886
Q ss_pred hccCCCcchhhHHHHHHHHhhhhc
Q 000149 569 LSRVSPSSTKHVISQVFAALIPFL 592 (2037)
Q Consensus 569 L~~~~~~~l~~ll~~i~~~lip~~ 592 (2037)
.|.-++|+-+++-..+++++
T Consensus 145 ----~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 145 ----HPTTFRPFANKIESALLSLL 164 (165)
T ss_pred ----CCccccchHHHHHHHHHHHh
Confidence 36778888888888887765
No 260
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=38.59 E-value=3e+02 Score=30.46 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++.- ....++.++.+.+|++|.|+.|.+.||.=|..+.+.....+|.-+.+.
T Consensus 16 ~dw~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 16 ENWGLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred cCHHHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 4444444555555542 457899999999999999999999999999999999888788766544
No 261
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=38.06 E-value=1.4e+03 Score=32.41 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH
Q 000149 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2037)
Q Consensus 1380 ~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak 1459 (2037)
++...++-|+.|-..|+...|+..+-.+++.-. . ..+-+++++|+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~----------------------------~-------~~~~vw~~~a~ 457 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREG----------------------------Y-------QNAFVWYKLAR 457 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc----------------------------c-------cchhhhHHHHH
Confidence 456888999999999999999999887654210 0 01446777888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1460 WIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1460 wl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+.+.+. -++++..|..++.+.|..-.+-.+|+--|.++
T Consensus 458 c~~~l~e--~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 458 CYMELGE--YEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHhh--HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 7776665 78899999999999998877777776555433
No 262
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.01 E-value=1.9e+02 Score=37.70 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=84.8
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~--~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
++++-+-..++.+-+.-+.++++.+......+..- +.|+..=-+|.+|-++++.++|++.-..++.=-+.+ -+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~-~~---- 497 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE-HL---- 497 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc-cc----
Confidence 55566667788888888888888888777766543 356666668999999999999999887776411100 00
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
+-.+ --+++.|+.++ .+|. .+.+...+..++|++++|+.|-++-.||.+
T Consensus 498 --------~~v~------------~~plV~Ka~l~-~qwk-----~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 498 --------IIVN------------AAPLVHKALLV-LQWK-----EDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred --------cccc------------chhhhhhhHhh-hchh-----hhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 0000 01244555444 4587 346778888999999999999999999986
No 263
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.99 E-value=1.3e+03 Score=32.20 Aligned_cols=283 Identities=18% Similarity=0.275 Sum_probs=150.0
Q ss_pred ccchhhHHHHHHHHHHhhhc------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHH
Q 000149 233 SSRSNELKLLDVIKLAFTAA------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIR 306 (2037)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~ 306 (2037)
.+....--.|+.++-.+... +|+..-+-+=+-.++++.. .+-+ .-+|+.++.+.+--||-.|...|-
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik----~qd~---I~lll~~~e~~DF~VR~~aIqLls 147 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIK----NQDN---ITLLLQSLEEFDFHVRLYAIQLLS 147 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHc----Cchh---HHHHHHHHHhhchhhhhHHHHHHH
Confidence 44444444555555544443 2444344444445554432 2222 235777788888889999998888
Q ss_pred HHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHH
Q 000149 307 KSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNI 386 (2037)
Q Consensus 307 ~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~ 386 (2037)
++-++ +. .-+-+-+...|.-+.-+.. +|- +.++-++----+.|--||... .-
T Consensus 148 alls~-----------r~--------~e~q~~ll~~P~gIS~lmd-lL~-DsrE~IRNe~iLlL~eL~k~n-------~~ 199 (970)
T KOG0946|consen 148 ALLSC-----------RP--------TELQDALLVSPMGISKLMD-LLR-DSREPIRNEAILLLSELVKDN-------SS 199 (970)
T ss_pred HHHhc-----------CC--------HHHHHHHHHCchhHHHHHH-HHh-hhhhhhchhHHHHHHHHHccC-------ch
Confidence 87222 12 1134556677777777663 443 223333332222233333221 11
Q ss_pred HHHHHHHcCCCchhHHhhhHHHHHHHHhcccc----HHHHHHHHHHHHhhc--CCChHHHHH--hhhHHHHHHHHH--hh
Q 000149 387 INELAKCLNTDMVPLIVTWIPKVLAFALHQAD----ERRLLSALEFYCIQT--GSDNQEIFA--AALPALLDELIC--FV 456 (2037)
Q Consensus 387 i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~----~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~l~ell~--~~ 456 (2037)
|++|-. +.|-|-+.+. ++..+. +=-+..||.++.+-. +++.|.+|+ ..+|.+. .|+- ..
T Consensus 200 IQKlVA---------FENaFerLfs-IIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~-klL~~f~~ 268 (970)
T KOG0946|consen 200 IQKLVA---------FENAFERLFS-IIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL-KLLSVFEF 268 (970)
T ss_pred HHHHHH---------HHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH-hhcCcccc
Confidence 222211 1233333333 222222 235788998877764 567788888 3455554 3331 23
Q ss_pred cCCCchH---HhhhhcchhHHHHHHhhhcCCCCC-------hhhhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHH
Q 000149 457 DGGDSDE---INERLNRVPRVIRKVSTVLTGNED-------LPGFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEI 525 (2037)
Q Consensus 457 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~ 525 (2037)
|++ ++ ..+|.+.+..+++-+...++.... -..-.+.|.|-++-.+ +.++ -+......+|....+
T Consensus 269 ~d~--Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~i---l~~~~vp~dIltesiitvAe 343 (970)
T KOG0946|consen 269 GDG--EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTI---LMHPGVPADILTESIITVAE 343 (970)
T ss_pred cCc--ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHH---HcCCCCcHhHHHHHHHHHHH
Confidence 332 11 134667778888877655543322 2355566777666443 2344 234566788888888
Q ss_pred HHHHh-----------ccccccchHHHHHHHHHHhcC---CCcchhhhHHHHHHH
Q 000149 526 LIEMI-----------GSHLTTYVPKILVLLMHAINK---ESLQCEGLSVLHFFI 566 (2037)
Q Consensus 526 li~l~-----------g~~v~~~~pqI~a~L~saL~~---~~L~~~~l~~W~~fv 566 (2037)
+|+=. -++...-||-|...|.+.... ..+|..++.|..+|+
T Consensus 344 vVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 344 VVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 88733 234445688888888888753 345555555555543
No 264
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=37.85 E-value=54 Score=37.41 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHh---cchhHHHHHHHhhcCC
Q 000149 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQ---YPQQGLWIMAAVSKST 1643 (2037)
Q Consensus 1579 i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~---yPqq~lw~l~~~~kS~ 1643 (2037)
|.+..-+.+...|...-+..+||||..+.+... ..+...|.+-+.. +-+|.+|.|.+-+...
T Consensus 87 Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~---~~l~~FLl~~A~~s~~faHql~W~lkae~~~d 151 (175)
T cd00871 87 VLQYAVRVLESYPVETVFFYIPQIVQALRYDKM---GYVEEYILETAKRSQLFAHQIIWNMQTNCYKD 151 (175)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHhhhHHHHHHHHHHHHHhccCC
Confidence 344444567789999999999999999999763 3455555444433 4589999998865433
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=37.67 E-value=73 Score=25.07 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
|+++..+|......|+ .+++++.|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~--~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--YEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCcC
Confidence 4667778888877776 88899999999999985
No 266
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=37.35 E-value=19 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred ccCCCCCCceeEecCCC----cEEEeecccc
Q 000149 1931 GLGDRHGENILFDSTTG----DCVHVDFSCL 1957 (2037)
Q Consensus 1931 gLGDRH~eNILid~~tG----~vvHIDF~~~ 1957 (2037)
-=+|=||+||+++. +| +++-+|||++
T Consensus 282 fHaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 282 FHADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eeCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 34899999999984 55 9999999987
No 267
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.01 E-value=3.5e+02 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCch--hhhhhHHHHHHhccChHHHH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSV--QRHSDVLNCLLNMCHLQAMV 1168 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~--~~~~glL~CL~~Lgq~~~ll 1168 (2037)
.|++.|.-+.|.+.|+++++..|++- -...|+.-| ..|+++...
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC--~qg~~~eA~ 123 (250)
T COG3063 78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC--AQGRPEEAM 123 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH--hCCChHHHH
Confidence 34666666666666666666666542 233455544 333554433
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=36.81 E-value=46 Score=24.32 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPT 1146 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~ 1146 (2037)
....+...|++++|..+|+.+++..|+
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345678899999999999999987764
No 269
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.75 E-value=1.3e+03 Score=31.71 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=63.6
Q ss_pred hhhhcCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc
Q 000149 1034 VSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK 1113 (2037)
Q Consensus 1034 V~~fL~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~ 1113 (2037)
|..|+..=...--..+|...+.|.+||..+|.--.++ . ....+....+-|+..+|.+-.+-+...-
T Consensus 726 inhfiea~~~~kaieaai~akew~kai~ildniqdqk-~------------~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 726 INHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK-T------------ASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc-c------------ccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 3444433333334578999999999999999632221 1 1235778889999999999888876521
Q ss_pred cCChhHHHHHHHhhcCHHHHHHHHHH
Q 000149 1114 SLSLQDELLSNKKSGNWAEVFTSCEQ 1139 (2037)
Q Consensus 1114 ~~~l~~qil~~E~~G~W~~A~~~YE~ 1139 (2037)
--..+.|..|-++|+|.+|...-|.
T Consensus 792 -~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 792 -DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred -chhHHHHHHHhccccHHHHHHHHHH
Confidence 1234577889999999999887764
No 270
>PRK14879 serine/threonine protein kinase; Provisional
Probab=36.39 E-value=77 Score=36.30 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.6
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=||-+|+|||++ .|.+.-||||+.
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 389999999998 799999999875
No 271
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.33 E-value=3.4e+02 Score=36.72 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHH--HHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHM--EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~i--E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
.+|-=..-+..|.++++.|.--+-+|...++.+..| -..+.+-..|+.++|++.+++++.-.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---------------- 553 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---------------- 553 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC----------------
Confidence 457777778899999999999999998888776544 34477778899999999999987521
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKR 1507 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~ 1507 (2037)
|.++-+ .-.+|+.+..+++ -+++...+.+..++-|+-.-.||.+|+-|.++-.
T Consensus 554 ---~kn~l~----------~~~~~~il~~~~~---------~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~----- 606 (638)
T KOG1126|consen 554 ---PKNPLC----------KYHRASILFSLGR---------YVEALQELEELKELVPQESSVFALLGKIYKRLGN----- 606 (638)
T ss_pred ---CCCchh----------HHHHHHHHHhhcc---------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc-----
Confidence 111110 0022333333333 4566677788888899888899999998865420
Q ss_pred hhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1508 QEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1508 ~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
. ..|+.+|.-|+...++
T Consensus 607 -~----------------~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 607 -T----------------DLALLHFSWALDLDPK 623 (638)
T ss_pred -c----------------hHHHHhhHHHhcCCCc
Confidence 0 1477777777766554
No 272
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=36.21 E-value=5.5e+02 Score=29.74 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH
Q 000149 1380 APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR 1459 (2037)
Q Consensus 1380 ~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak 1459 (2037)
+++...+.|.-...+|+..+|+..++..+...|. .+...++.+.+|.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------------------------s~~a~~A~l~la~ 50 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---------------------------------SPYAPQAQLMLAY 50 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------------------------STTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------------------------ChHHHHHHHHHHH
Confidence 3456778899999999999999999998764331 0122344555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccchH---HHHHHHHhhhHHH
Q 000149 1460 WIHYTGQKQKEDVITLYSRVRELQPMWE---KGYFYMAKYCDDV 1500 (2037)
Q Consensus 1460 wl~~s~~~~~~~i~~~Y~~A~~l~~~we---K~~~~la~y~d~l 1500 (2037)
-.-..+ +.++++..|.+-++.+|+.+ .++|.+|.-+-+.
T Consensus 51 a~y~~~--~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 51 AYYKQG--DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHTT---HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 433333 36778888999999999765 4677777644333
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=35.75 E-value=82 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
|+++..+|.-....++ .++++..|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCcC
Confidence 4566667776666554 78899999999999986
No 274
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.56 E-value=3.1e+02 Score=30.01 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 650 PMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 650 ~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
.....+.++.+-+|++|.|+.|.+.||.=|..+.+.....++.-+.+.
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~ 84 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK 84 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH
Confidence 456789999999999999999999999999999998888888766543
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=35.42 E-value=1.1e+02 Score=34.87 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~Lgq~~~ll~~~~ 1172 (2037)
.--|.+.|+.+.|+.+|+++.+...+. ++..+.+++-....|+|..+.+++.
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ 97 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334789999999999999876643221 2223445555555566665555443
No 276
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=35.36 E-value=49 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
-+|=||+||+++ .+|+++=+|||++
T Consensus 280 H~D~hPgNilv~-~~g~i~liDfG~~ 304 (437)
T TIGR01982 280 HADLHPGNIFVL-KDGKIIALDFGIV 304 (437)
T ss_pred eCCCCcccEEEC-CCCcEEEEeCCCe
Confidence 369999999997 6899999999986
No 277
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=35.23 E-value=2.5e+02 Score=31.61 Aligned_cols=79 Identities=5% Similarity=-0.146 Sum_probs=54.8
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH-HhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT-HVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~-~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
....|++++|...|+.+...+|.+.+...|+=-|++.+|+|...+. |.....-. |+. .+-.-.+.+|--.+|+-+.-
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd-p~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA-PQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC-chHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999999999999998899899999999986554 33332111 211 11123455666667766554
Q ss_pred HH
Q 000149 1203 DE 1204 (2037)
Q Consensus 1203 ee 1204 (2037)
++
T Consensus 123 ~~ 124 (157)
T PRK15363 123 IK 124 (157)
T ss_pred HH
Confidence 43
No 278
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.95 E-value=24 Score=41.95 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.7
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=||=||+||+++ ..| +.=||||+.
T Consensus 158 H~Dikp~Nili~-~~g-i~liDfg~~ 181 (232)
T PRK10359 158 SGDPHKGNFIVS-KNG-LRIIDLSGK 181 (232)
T ss_pred cCCCChHHEEEe-CCC-EEEEECCCc
Confidence 379999999998 477 999999865
No 279
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.83 E-value=3.2e+02 Score=33.74 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCC---chHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRR---SDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~---~~~Ai~~L~~~i~ 1409 (2037)
..++-|...+++-...|+++.|..|.-+|.++. .|+...-+|..|..+.. ..+|...|++++.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 346789999999999999999999999999884 45677788888876544 3567777777765
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=34.43 E-value=2.3e+02 Score=31.91 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHhHhhhhhh
Q 000149 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIGYFLQDTV 222 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~~~~~~~~ 222 (2037)
.-.+|.+-..++|-. .+.+-+-..+.-+.-++..++.+++..-.++|++-+..++ .+....++++++.++..++....
T Consensus 22 ~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334566656666644 3455566777788888888888888888899998666666 44567789999999999762111
Q ss_pred hhhhccccccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhh
Q 000149 223 LSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMA 271 (2037)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~ 271 (2037)
+-..-.+..-.+.+-++-.++...-+ +...++.|.+++.++..
T Consensus 101 ------~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 ------GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred ------CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111111113444444443333322 55777777777776653
No 281
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=34.34 E-value=3.9e+02 Score=29.00 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALING 696 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~ 696 (2037)
|+....-++-..++.- ....++.++.+-+|++|.|+.|.+.||.=|..+.......++..+.+
T Consensus 16 ~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s 78 (133)
T cd03561 16 PDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD 78 (133)
T ss_pred ccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh
Confidence 4444444555555432 46788999999999999999999999999999998887767765544
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.15 E-value=3.3e+02 Score=33.65 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=43.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~ 1172 (2037)
.+.-..|+..+|...+..+++..|++.+.-.++.+||.+.|+.+......+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 445578999999999999999999999999999999999999875444333
No 283
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=33.09 E-value=4.1e+02 Score=33.21 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHhc--cccccch---HHHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHH
Q 000149 513 LSLQKQALKRIEILIEMIG--SHLTTYV---PKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQV 584 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g--~~v~~~~---pqI~a~L~saL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i 584 (2037)
..+.--.+..++.+.|.+. .+...++ .+|+--|-.+|+ -.+.+.-|+++-....+.+. ++.+..-+..-
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig---~~~L~~dl~i~ 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIG---PDGLAQDLPIY 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcC---HHHHHhhcHHH
Confidence 4456677888888888887 3444444 456666777774 23566778888888888764 45666666666
Q ss_pred HHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcc-----cCCCCCC--chhhHHHHHHHHHhcCCCCHHHHH
Q 000149 585 FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIH-----EFPLLPS--IAALTEVNKAIQEARGPMTLKDQL 657 (2037)
Q Consensus 585 ~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~-----~lp~Lp~--ip~L~~v~~~l~~~r~~~~l~~~l 657 (2037)
...+.|++..... .++-+..+|++.-++.-...|...+. -+|.|.+ -+.++++.+.+...+...+..--.
T Consensus 99 ~~GLfpl~~~asi---~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~ 175 (307)
T PF04118_consen 99 SPGLFPLFSYASI---QVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFW 175 (307)
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHH
Confidence 7778888874432 23567777887766654444444433 3366653 123455666666666655544333
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000149 658 LAAVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 658 ~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
+.+=..+- .|+.+|.-|+.-|...+.+..
T Consensus 176 ~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~ 204 (307)
T PF04118_consen 176 QCLWLCII-TSPSRRLGALNYLLRRLPKFQ 204 (307)
T ss_pred HHHHHHHh-cCcchhHHHHHHHHHhCCccc
Confidence 33333332 488999999999999887755
No 284
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=33.05 E-value=32 Score=39.17 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=||-||+||+++ .|++.-||||+.
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 489999999999 799999999865
No 285
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=33.02 E-value=1.2e+03 Score=33.39 Aligned_cols=133 Identities=6% Similarity=-0.116 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.-...|.+.+..+...|+++.|...+..+....+ +.+.+-.+-++...++...|... +++...+.. ..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~----~~---- 98 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN----LK---- 98 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----cc----
Confidence 4456899999999999999999999887766643 34555556688888887766654 443321110 00
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+.....+... .+-...-.|+..+|..++..|+ .++....|.++++++|.-.-+--.+|-||...
T Consensus 99 -------~~~ve~~~~~i--~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 99 -------WAIVEHICDKI--LLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred -------hhHHHHHHHHH--HhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 00000000000 0000112367777888888776 78888999999999998888888888777544
No 286
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.95 E-value=6.6e+02 Score=27.17 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=44.0
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+-..|+.++|...|+.++...|++. ...+.+-+|+...|+++..+...+... .+.+......+.-++..+.|+|+
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHH
Confidence 3456778888888877777665542 233456677777777777666655421 12223333334445555566665
Q ss_pred hH
Q 000149 1201 LM 1202 (2037)
Q Consensus 1201 ~l 1202 (2037)
.-
T Consensus 136 ~A 137 (145)
T PF09976_consen 136 EA 137 (145)
T ss_pred HH
Confidence 44
No 287
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=32.76 E-value=3.1e+02 Score=38.30 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred hchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc----CChhHHHH--HHH
Q 000149 1052 RCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS----LSLQDELL--SNK 1125 (2037)
Q Consensus 1052 ~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~----~~l~~qil--~~E 1125 (2037)
..+.|-+||--.++-.++..+. .. ...+..|.. ..++--|...|+...... -+++-|++ -|+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-----~~-----a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-----LY-----AKVLKALSL--FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-----HH-----HHHHHHHHH--HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 3456677777777776654321 10 112333322 234444444466542221 12333444 357
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChH
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQ 1165 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~ 1165 (2037)
-.|..++|.++||++.++.|+ .+...++..|+.+-+.|.
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887 777777888776655554
No 288
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=32.75 E-value=1.8e+02 Score=29.52 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=60.5
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
+.++|.++. .+++..++..|..+..+.......-....-++-+-.+|.+++..||..++..+..+.++.--
T Consensus 12 l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-------- 82 (120)
T cd00020 12 LVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-------- 82 (120)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--------
Confidence 556666554 67888888999998888542211001112223333345899999999999999997622210
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAEL 268 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i 268 (2037)
....-....++..+-+.+. ..|..+++..+-+++.+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~-~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLD-SSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHCCChHHHHHHHh-cCCHHHHHHHHHHHHHh
Confidence 0000000113444445343 33666777777776665
No 289
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.64 E-value=5.5e+02 Score=33.59 Aligned_cols=91 Identities=8% Similarity=-0.058 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHhcc-CCh-----hHHHHHHHhhcCHHHHHHHHHHHHccC-------CCchhhhh
Q 000149 1086 DEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSL-----QDELLSNKKSGNWAEVFTSCEQALQME-------PTSVQRHS 1152 (2037)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~-~~l-----~~qil~~E~~G~W~~A~~~YE~~Lq~~-------p~~~~~~~ 1152 (2037)
...+..|-+.|.+|+.++.+.|+...--. .+. -.-.-.||..++.++|..+||+-++.. |..+..-.
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 46789999999999999999998753211 111 122335899999999999999887622 22222222
Q ss_pred hHHHHHHhccChHHHHHHhhhhhc
Q 000149 1153 DVLNCLLNMCHLQAMVTHVDGLIS 1176 (2037)
Q Consensus 1153 glL~CL~~Lgq~~~ll~~~~gl~~ 1176 (2037)
-+-+=..+.+.|+....|+.+...
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhc
Confidence 222334566777777666665543
No 290
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=4.9e+02 Score=32.89 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHH
Q 000149 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2037)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2037)
..+++.|.-++-+-..--.+-..+-|.--+. .+.+++..||+.|.++|..-+||+.= .-..-.+.+++.++
T Consensus 101 e~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~--------~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 101 EDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPK--------SQEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHcccHHHH
Confidence 4466665544333221112223455766667 45999999999999999999866541 11122233477788
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCC--CCcchHHHHHHHHHHHHhhhhccCccccc
Q 000149 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDN--PHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2037)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~--~n~~~~~~a~~~i~~la~~~~~~~~~l~~ 321 (2037)
-.+++...+-++.=-.|-+++-+-+--..+-..|. -.+..|++-|-. .++.++..|...|..+.+.+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~------ 245 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD------ 245 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh------
Confidence 88888444443433445555444322211112221 124556666666 67888889999999987666331
Q ss_pred chhhhhhhhhhHHHHHhhcCc
Q 000149 322 SKAVLICNELFDYLSVRLASR 342 (2037)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~~ 342 (2037)
.-.++...|+.++.++++-
T Consensus 246 --~d~~~~~~f~~~~~~l~~~ 264 (342)
T KOG2160|consen 246 --EDIASSLGFQRVLENLISS 264 (342)
T ss_pred --hhHHHHhhhhHHHHHHhhc
Confidence 1134455667766666543
No 291
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.94 E-value=2.1e+03 Score=32.70 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCChhhHHHHHHHhh---cccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 142 HSDFSFLLNIYFEFL---YDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 142 ~~~~~~~~~~~~~~l---~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
+..|++-=..|.+++ +.++.-.++--++++|..|.-=.+ .++-.. ...+-|.-=++|....||+||---++-|+
T Consensus 807 ~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp-~vL~~~--dvq~~Vh~R~~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 807 ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP-SVLSRP--DVQEAVHGRLNDSSASVREAALDLVGRFV 883 (1692)
T ss_pred hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh-HhhcCH--HHHHHHHHhhccchhHHHHHHHHHHhhhh
Confidence 334444333444444 349999999889999888776655 222221 12223333349999999999999999885
Q ss_pred --hhhhhhhh-------ccccccccchhhHHHHHHHHH
Q 000149 219 --QDTVLSSL-------FLDENASSRSNELKLLDVIKL 247 (2037)
Q Consensus 219 --~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 247 (2037)
.+.....+ +.|++-+.+-.-..++.+||.
T Consensus 884 l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 884 LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 33333333 345444444433777777775
No 292
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=9.8e+02 Score=30.21 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=106.5
Q ss_pred HHHHHHHhhhchhh----hhhhhhhccchhhhhhhccCcccccccccccc-cccccccc----cccccccHHhhhhcccc
Q 000149 41 TNVFKRLESLGKDE----CEKVKRVFPISFGFLSCLSGTCSSIVDWDKNA-CKLLLNVE----DDILSQTVDYLLENFWC 111 (2037)
Q Consensus 41 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~c 111 (2037)
++||+-.+...--. -+.++..++++ |.|+|.-|..| ++++.+. .++|--++ -...++.+..||.+|.|
T Consensus 12 ~~v~eni~ef~m~peea~~e~I~qfe~qg-i~l~nIik~~s--v~~~~~qp~i~~~~~~i~e~i~~~~~E~s~ll~~l~d 88 (461)
T KOG4199|consen 12 DVVKENVVEFSMTPSEAKEETIKQFEAQG-INLANIIKDLS--VNPQTGQPVINETVDKIKEHIGQKLEETTELLEQLAD 88 (461)
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHhcc-CcccccccccC--CCCCCCCccHHHhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45565555443222 24566666665 67999999875 4444333 23332111 12455667789999999
Q ss_pred cccCCccccc-----ccccccccCCCcc----------cccc-----cccCCChhhHH--HHHHHhhcc-cCccchhHHH
Q 000149 112 SKCDTNVVHN-----QELSSKIVNPSDV----------QSKD-----LNFHSDFSFLL--NIYFEFLYD-ESSEEVQLSC 168 (2037)
Q Consensus 112 ~~c~~~~~~~-----~~~~~~~~~~~~~----------~~~~-----~~~~~~~~~~~--~~~~~~l~~-~~~~~v~~~~ 168 (2037)
+|.++.+|- +..+.-+|-.-.+ ++.+ ...--+|..++ .++.++|-+ -.+++|+.+.
T Consensus 89 -~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~ 167 (461)
T KOG4199|consen 89 -ECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLT 167 (461)
T ss_pred -HHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHH
Confidence 999865442 1111111100000 0000 01111222222 345556655 4456666666
Q ss_pred HHHHHHHHccCCchhhhhhhhHHHH-HHHHHh-hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchh-hHHHHHHH
Q 000149 169 VRVIRRILVHGTRDVLLKTRSEWIK-CIEFLL-LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN-ELKLLDVI 245 (2037)
Q Consensus 169 ~~~l~~il~h~~~~~~~~~~~~w~~-~~~~~~-~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 245 (2037)
++.+++-+.-+--+--.=+...-.+ .++.|. ..+.|-||++ +-++...+-+--.--.|+.--+--+.. .++++--+
T Consensus 168 ~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel-~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L 246 (461)
T KOG4199|consen 168 LQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVREL-YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTAL 246 (461)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHH-HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHH
Confidence 6665554332221100000000111 111222 2344567754 456666541111111122111111222 25667777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHH
Q 000149 246 KLAFTAADDPLILETLLESTAEL 268 (2037)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i 268 (2037)
-+++...-||.+.=.+.-|++.|
T Consensus 247 ~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 247 TEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHccCCccHHHHHHHHHHHH
Confidence 78888888999999999999988
No 293
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=1.5e+03 Score=30.63 Aligned_cols=169 Identities=13% Similarity=0.217 Sum_probs=107.5
Q ss_pred ChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHhc--CCCcchhhhHHHH
Q 000149 487 DLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTT-YVPKILVLLMHAIN--KESLQCEGLSVLH 563 (2037)
Q Consensus 487 ~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~-~~pqI~a~L~saL~--~~~L~~~~l~~W~ 563 (2037)
.|-.|+-.-+=|+++.+.+ +..+.+..+=..|+++.+-+.+.=.+ =.++++..|-..+. .++++..++.--.
T Consensus 201 ~m~~yl~~~ldGLf~~LsD-----~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 201 EMISYLPSLLDGLFNMLSD-----SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQ 275 (675)
T ss_pred HHHhcchHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHH
Confidence 4557776666677666643 33455556666778888777764444 45777777776664 5667777755445
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHH
Q 000149 564 FFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKA 643 (2037)
Q Consensus 564 ~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~ 643 (2037)
.||.. .+.++-+.++.|+..++|.++.-++ ...+.+..+. |..+++ +. +.+.
T Consensus 276 efV~i----~g~~~l~~~s~il~~iLpc~s~~e~---~~i~~~a~~~------n~~l~~--l~------s~~~------- 327 (675)
T KOG0212|consen 276 EFVKI----PGRDLLLYLSGILTAILPCLSDTEE---MSIKEYAQMV------NGLLLK--LV------SSER------- 327 (675)
T ss_pred HHhcC----CCcchhhhhhhhhhhcccCCCCCcc---ccHHHHHHHH------HHHHHH--HH------hhhh-------
Confidence 58775 4567889999999999999974322 1112222222 222221 00 0000
Q ss_pred HHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHH
Q 000149 644 IQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVT 691 (2037)
Q Consensus 644 l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~ 691 (2037)
.....+.+..+..+.+-+.|++..-|..+|+=+..+..+...++-
T Consensus 328 ---~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 328 ---LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred ---hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 011156667777788888999999999999999999888776544
No 294
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=31.00 E-value=4.8e+02 Score=28.78 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALING 696 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~ 696 (2037)
|+...--++-..++. +....++.++.+-+|++|.|+.|.+.||.=|..+.+.....+|.-+.+
T Consensus 20 ~dw~~ileicD~In~--~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 82 (142)
T cd03569 20 PDLASILEICDMIRS--KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS 82 (142)
T ss_pred cCHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh
Confidence 344443445555543 234689999999999999999999999999999988877767765554
No 295
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=30.55 E-value=97 Score=37.20 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=48.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhh---hhHHHHHHhccChHHHHHHhhhhhccchhh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRH---SDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~---~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~ 1181 (2037)
....-..|+|++|...|+..++..|.+.... ..+-.|+.+.++++......+.+....|+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 4445678999999999999999999875433 567788899999998888888777766654
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.52 E-value=1.5e+03 Score=30.63 Aligned_cols=297 Identities=18% Similarity=0.154 Sum_probs=147.9
Q ss_pred hHHHHHHHHh-hCCChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH-hccChH
Q 000149 1088 DVSFLMEIYS-FLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL-NMCHLQ 1165 (2037)
Q Consensus 1088 ~~~~L~~IYa-~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~-~Lgq~~ 1165 (2037)
.+..+-.+|. .|.+.=-.+|.|+.... .+ -+.|.-+++...||+.++.-|-+++.=++.++=+. .-|+.+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~----~E----~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFAD----YE----YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHH----HH----HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHH
Confidence 4478888884 47888889999986542 11 37899999999999999998888776556555333 346666
Q ss_pred HHHHHhhhhh-------ccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHc
Q 000149 1166 AMVTHVDGLI-------SRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMK 1238 (2037)
Q Consensus 1166 ~ll~~~~gl~-------~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~ 1238 (2037)
++....+-.. .+.|=|.+ -+..| -+-.+|..+-......-+. +...-..+....-+.+....-
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdk---yie~e--n~qks~k~v~~iyeRilei-----P~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDK---YIEFE--NGQKSWKRVANIYERILEI-----PLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHH---HHHHH--hccccHHHHHHHHHHHHhh-----hhhHhHHHHHHHHHHHhcCCh
Confidence 6554332111 11121211 11222 4455666554433322110 000000111111111111000
Q ss_pred CCcchHHHHHHHHHHHHh------------hhh----------hhhchhhH---HhhhHHHHHhhhHHHHHHHHHHhhcc
Q 000149 1239 KDHFSVSDKIGVSKQVLI------------APL----------AAAGMDSY---TRAYPFIVKLHLLQELEDFHAILVND 1293 (2037)
Q Consensus 1239 ~d~~~f~~~I~~aR~~l~------------~~L----------~a~~~eSy---~r~y~~l~kLh~L~ELee~~~~~~~~ 1293 (2037)
+..-.+.+.++ .+..+. ..+ ++...++. .+.....-+.++..+.++-..... .
T Consensus 202 ~~l~~~d~~~~-l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f-E 279 (577)
T KOG1258|consen 202 KILLSIDELIQ-LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF-E 279 (577)
T ss_pred hhhcCHHHHHH-HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh-h
Confidence 00001111111 111111 011 11111111 111223334444444433222111 1
Q ss_pred ccccccCCCChHHHHHHHHHHHHHhhh--ccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHH
Q 000149 1294 SFLEKSFLPSDLKFSKLMANWENRLKY--TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRA 1371 (2037)
Q Consensus 1294 ~~~~~~~~~~~~~~~~l~~~W~~RL~~--~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~a 1371 (2037)
....++.....+....=+.+|+.=|.. +..+++ +--+|--|- ...-.. --+-|+++++.--+.|....|.++
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~-~~~~l~erc-li~cA~----Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS-RVFILFERC-LIPCAL----YDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHH-HHHHHHHHH-HhHHhh----hHHHHHHHHHHHHHcCchhHHHHH
Confidence 111222222222222334567765542 233332 222333332 222222 134699999999999999999999
Q ss_pred HHHHhhc---CCChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1372 ILEAQAS---GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1372 Ll~a~~~---~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
+..|.+. ..|...+-+|.+-=..|+...|...||...+.
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 9988665 46778888998888999999999999988654
No 297
>PHA02768 hypothetical protein; Provisional
Probab=30.31 E-value=20 Score=32.96 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=13.6
Q ss_pred hhcccccccCCccccc
Q 000149 106 LENFWCSKCDTNVVHN 121 (2037)
Q Consensus 106 ~~~~~c~~c~~~~~~~ 121 (2037)
|-||.|++||+++.+.
T Consensus 3 ~~~y~C~~CGK~Fs~~ 18 (55)
T PHA02768 3 LLGYECPICGEIYIKR 18 (55)
T ss_pred ccccCcchhCCeeccH
Confidence 5699999999988664
No 298
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.85 E-value=8.7e+02 Score=32.11 Aligned_cols=174 Identities=15% Similarity=0.175 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhh
Q 000149 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALI 589 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~li 589 (2037)
-..|..|++.|+.+-..|-..+...-+++..-+.-+|- ..+..-.+++|....+..... .+|++.+-.|...+.
T Consensus 272 a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~l~ialrlR 348 (533)
T KOG2032|consen 272 AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYLLNIALRLR 348 (533)
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhchhHHHHHH
Confidence 35677899999999888766788888887777777763 345555566666665555533 688999999999999
Q ss_pred hhcccCCCCchhhHHHHHHHHHHHHHHh----H----HHHHhhcccCCCCCCchh---------------------hHHH
Q 000149 590 PFLERDKDNPSVLLNKVVKILEDLVLKN----R----AILKQHIHEFPLLPSIAA---------------------LTEV 640 (2037)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n----~----~~L~~~i~~lp~Lp~ip~---------------------L~~v 640 (2037)
++|+..++ ..+--+..++..|-.=. + +.+..-+. |++-+|.. .+++
T Consensus 349 ~l~~se~~---~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~--~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 349 TLFDSEDD---KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA--PLLLHLQDPNPYVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred HHHHhcCh---hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc--cceeeeCCCChHHHHHHHHHHHhcCchhHHHHH
Confidence 99985432 33555666666553311 0 11221111 22222211 1112
Q ss_pred HHHHHHhcC-CC-CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHH
Q 000149 641 NKAIQEARG-PM-TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALI 694 (2037)
Q Consensus 641 ~~~l~~~r~-~~-~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~ 694 (2037)
....++.-. .+ ..++..+.|+..++|-+++.-...+.+...++...-+.++..+
T Consensus 424 ~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aa 479 (533)
T KOG2032|consen 424 YHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAA 479 (533)
T ss_pred HHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHH
Confidence 222221110 01 1222334444559999999999999999999987765555544
No 299
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=29.85 E-value=43 Score=38.29 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=25.3
Q ss_pred ccCCCCCCceeEecCCCcEEEeecccccccC
Q 000149 1931 GLGDRHGENILFDSTTGDCVHVDFSCLFDKG 1961 (2037)
Q Consensus 1931 gLGDRH~eNILid~~tG~vvHIDF~~~f~~g 1961 (2037)
-=||=+|+||+++. +|.+.=+|||.+...+
T Consensus 147 ~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 35699999999994 9999999999886544
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.82 E-value=63 Score=29.58 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQR 1150 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~ 1150 (2037)
.+.|-+.|+++.|..+.+..|+.+|+|...
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456789999999999999999999998653
No 301
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=29.14 E-value=33 Score=45.57 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=34.1
Q ss_pred hccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh
Q 000149 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS 1980 (2037)
Q Consensus 1930 LgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd 1980 (2037)
+=.+|-||+|||++..-|++--+|||+.-+.......| ++|.|++.
T Consensus 436 vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp-----~~t~~y~A 481 (612)
T KOG0603|consen 436 VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP-----ALTLQYVA 481 (612)
T ss_pred eeecCCChhheeecCCCCcEEEEEechhhhCchhhccc-----chhhcccC
Confidence 44789999999996578999999999875544332222 67777765
No 302
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=3.9e+02 Score=32.59 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh-cC----CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQA-SG----APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~-~~----~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
--+-|--.-|+|.+..|..+..+..+ ++ .|++.+=..+.++.+|+...|....-..+++.|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 45666667788889888888776543 32 4667777788899999999999988777664331
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
.+ -...+++++|.-+.+.++ .+++...|+++++-+|.-+.
T Consensus 211 ------s~--------------KApdallKlg~~~~~l~~--~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 211 ------SP--------------KAPDALLKLGVSLGRLGN--TDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ------CC--------------CChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHCCCCHH
Confidence 00 113589999999988887 78889999999999987643
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.50 E-value=6.5e+02 Score=26.27 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=53.5
Q ss_pred HhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 622 KQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 622 ~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
.+.-.+-+.=|+-+.+.++-..++.. .....+....+.+|+++.|+.|++.||.=|..+++...+.++..+.+.
T Consensus 6 ~~AT~~~~~~p~~~~i~~i~d~~~~~--~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 6 EKATSNENMGPDWPLIMEICDLINET--NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 33444444455655555555555432 345678888999999999999999999999999998887777766543
No 304
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=2.1e+03 Score=31.67 Aligned_cols=97 Identities=12% Similarity=0.240 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccccc-cchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCC
Q 000149 520 LKRIEILIEMIGSHLT-TYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2037)
Q Consensus 520 l~sl~~li~l~g~~v~-~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2037)
|-++..+..--+.+++ .+++|++-+....|. .++....|+.--.++|..+.+ +-+.+++.++.-++..+..
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~--- 879 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSH--- 879 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHH---
Confidence 7888888777788766 577999999888884 788999999999999998765 4567778888777777554
Q ss_pred CCchhhHHHHHHHHHHHHHHhH-HHHH
Q 000149 597 DNPSVLLNKVVKILEDLVLKNR-AILK 622 (2037)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~-~~L~ 622 (2037)
+.....+.++..+|+-|+.+.. +.|+
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 2233567889999999999865 4444
No 305
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.30 E-value=1.2e+02 Score=30.38 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=44.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCcchhhhHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN--KESLQCEGLSV 561 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~--~~~L~~~~l~~ 561 (2037)
.+..+...|...|.++..|+.-.|..+.+.=|-|...|..+.. .+++-..|+++
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3445678899999999999999999999999999999998885 45566555554
No 306
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=28.18 E-value=40 Score=37.87 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred cCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
=||=||+||+++ +|.+.=+|||..-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 579999999999 89999999987743
No 307
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.07 E-value=91 Score=24.88 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHHh
Q 000149 657 LLAAVDGLNHENLNVRYMVVCELSKLLK 684 (2037)
Q Consensus 657 l~~~~~rl~~en~~Vr~~aL~eL~~~L~ 684 (2037)
+..+.+.++++++.||..|..-|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999887754
No 308
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.02 E-value=2e+02 Score=36.76 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=57.0
Q ss_pred hchhHHHHHHHHHHHhhhhcCCCCCccc-cCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc--c-CC---hhHHHHHH
Q 000149 1052 RCQAYARSLMYFESHVREKSGSFNPAAE-KSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK--S-LS---LQDELLSN 1124 (2037)
Q Consensus 1052 ~c~ayaRAL~ylE~~~~~~~~~~n~~~~-~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~-~~---l~~qil~~ 1124 (2037)
.-..|.||+.++|...-. ++... ............|.--|-.|++++.+..-....- . .+ +-.+...+
T Consensus 227 A~~~Yerav~~l~~~~~~-----~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 227 AKKRYERAVSFLEYRRSF-----DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred HHHHHHHHHHHhhccccC-----CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 346789999999864210 10000 0000011234566667777777776555443211 1 11 23344556
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2037)
...|.+++|..-|.++++.+|+|-..+..+.+|-..
T Consensus 302 l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 677777777777777777777776666666666544
No 309
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.83 E-value=9.9e+02 Score=34.12 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhh----HH
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGS---HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKH----VI 581 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~---~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~----ll 581 (2037)
++++.+.|..|--||-.+|.-... +++.++|.||--|-+-.+.-+....+ .+-..||....+ ++.| +.
T Consensus 513 ~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt-~vme~iV~~fse----ElsPfA~eL~ 587 (1010)
T KOG1991|consen 513 NDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT-NVMEKIVCKFSE----ELSPFAVELC 587 (1010)
T ss_pred cCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHH----hhchhHHHHH
Confidence 456677888888899999988764 59999999998887766433322222 355667776543 3332 23
Q ss_pred HHHHHHhhhhcc
Q 000149 582 SQVFAALIPFLE 593 (2037)
Q Consensus 582 ~~i~~~lip~~~ 593 (2037)
.++..+++..++
T Consensus 588 q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 588 QNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHHHHh
Confidence 444444555554
No 310
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.33 E-value=1.6e+02 Score=39.55 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHhc----CCCcchhhhHHHHHHHHHhccCCCc
Q 000149 514 SLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN----KESLQCEGLSVLHFFIEQLSRVSPS 575 (2037)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~saL~----~~~L~~~~l~~W~~fv~~L~~~~~~ 575 (2037)
..|.+-|+.+.+|.-.+|. .....+|.|.-.|...+. .+++...-+.|-..-.+.|....|+
T Consensus 283 ~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 283 DRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp -HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 4578899999999999997 567777888888887763 4456666666666655566554443
No 311
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=27.20 E-value=8e+02 Score=26.31 Aligned_cols=61 Identities=25% Similarity=0.165 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2037)
.+...|..-...|+.+.|...-.+|...+.+ .+.|..+--++..|+.++|+..|++.+...
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5677888888999999998888887766533 367788888999999999999999887643
No 312
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.94 E-value=1.4e+03 Score=28.96 Aligned_cols=278 Identities=14% Similarity=0.116 Sum_probs=166.4
Q ss_pred hhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCC
Q 000149 1264 MDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASG 1343 (2037)
Q Consensus 1264 ~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~ 1343 (2037)
+.+|-++.++++.=|.=.-++.+.+++.... .+-..--.+-+..|.|=++ +.=+.+++.++...+
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~-------~t~e~~ltLGnLfRsRGEv--------DRAIRiHQ~L~~spd 100 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP-------ETFEAHLTLGNLFRSRGEV--------DRAIRIHQTLLESPD 100 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHhcCc-------hhhHHHHHHHHHHHhcchH--------HHHHHHHHHHhcCCC
Confidence 3466667677666555444555555553210 0111112456667776443 235667777777666
Q ss_pred CCchh-HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1344 LGAEV-GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1344 l~~~~-~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
+..+. .-...+.++=--++|.++.|........+.+ .+++.-.-..++=++.+-++||..-+...+- +
T Consensus 101 lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~------~--- 171 (389)
T COG2956 101 LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL------G--- 171 (389)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc------C---
Confidence 54332 2334677888889999999999988775533 2333222334444566778898877665431 0
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
.| +.+..+|.++.-+|.=.. ...+.+.++...++|.+.+|+.-++-..+|+-+-
T Consensus 172 --------------------~q--~~~~eIAqfyCELAq~~~--~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-- 225 (389)
T COG2956 172 --------------------GQ--TYRVEIAQFYCELAQQAL--ASSDVDRARELLKKALQADKKCVRASIILGRVEL-- 225 (389)
T ss_pred --------------------Cc--cchhHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH--
Confidence 01 123356777777765433 2334677888899999999999999988887531
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHH
Q 000149 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVM 1580 (2037)
Q Consensus 1501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~ 1580 (2037)
. .| +| ..||+.|-+.+.-.++|+-..++++..-+=..|.. .+..
T Consensus 226 ----~--------~g-------~y-~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~------------~~~~---- 269 (389)
T COG2956 226 ----A--------KG-------DY-QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP------------AEGL---- 269 (389)
T ss_pred ----h--------cc-------ch-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH------------HHHH----
Confidence 1 01 12 36888898889889998888888887777555531 1111
Q ss_pred HHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhH
Q 000149 1581 SIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG 1632 (2037)
Q Consensus 1581 ~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~ 1632 (2037)
..+.++....+----.-++.|++--..-+ ......+.+-.+.+|---
T Consensus 270 ~fL~~~~~~~~g~~~~l~l~~lie~~~G~-----~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 270 NFLRRAMETNTGADAELMLADLIELQEGI-----DAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHhhCh-----HHHHHHHHHHHhhCCcHH
Confidence 22333344444444556677777654332 335556666667777544
No 313
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=26.64 E-value=4.7e+02 Score=28.30 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhcc-------cc
Q 000149 651 MTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR-------TV 723 (2037)
Q Consensus 651 ~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~-------t~ 723 (2037)
-+..+....+.+|+++.++.|.+-+|+=|..++..-.+.+...++-. +..|++ |..+.. ..
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~--------~~~Ik~----~~~f~g~~Dp~~Gd~ 101 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN--------SAQIRE----CANYKGPPDPLKGDS 101 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh--------HHHHHH----HHHcCCCCCcccCcc
Confidence 34556667788999999999999999999988887665555444321 123333 332221 22
Q ss_pred chhhHHHHHHHhhccc
Q 000149 724 VGQKLKLVCADCLGAL 739 (2037)
Q Consensus 724 ~~~~I~~lca~CLG~I 739 (2037)
.++.|+..+-||+..|
T Consensus 102 ~~~~VR~~A~El~~~i 117 (122)
T cd03572 102 LNEKVREEAQELIKAI 117 (122)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3456777777777655
No 314
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.17 E-value=2.5e+02 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=34.7
Q ss_pred HHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccc
Q 000149 1157 CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADE 1211 (2037)
Q Consensus 1157 CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~ 1211 (2037)
.|.|-|+|+..+.. +..+..| ++-|+.+=|+|++|-=+.++.|+.....
T Consensus 49 sLmNrG~Yq~ALl~--~~~~~~p----dL~p~~AL~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 49 SLMNRGDYQEALLL--PQCHCYP----DLEPWAALCAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHTT-HHHHHHH--HTTS--G----GGHHHHHHHHHHCT-HHHHHHHHHHHCT
T ss_pred HHHhhHHHHHHHHh--cccCCCc----cHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 47788999988443 4334444 4668889999999999999999986654
No 315
>PLN02789 farnesyltranstransferase
Probab=26.06 E-value=6.9e+02 Score=31.37 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc
Q 000149 1131 AEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR 1177 (2037)
Q Consensus 1131 ~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~ 1177 (2037)
.+++.+++++++.+|.|...-...--++..+|.|+.-+.+++.++..
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666666666666554444444455566666655555555443
No 316
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=25.94 E-value=2e+02 Score=37.46 Aligned_cols=66 Identities=12% Similarity=-0.058 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~-----~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+......|...+-...+.|+++.|..+..+|..+++.+ +..-.|-.+.+.|+.++|+..|+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667889999999999999999999999998886543 367888999999999999999999986
No 317
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=25.93 E-value=39 Score=38.82 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred HHHHhccCCCCCCceeEecCCCcEEEeecccc
Q 000149 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1926 vgYILgLGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
..+.+-=||=|++|||++...|++--|||+++
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccc
Confidence 45667779999999999966777768999765
No 318
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.73 E-value=8.9e+02 Score=29.54 Aligned_cols=131 Identities=20% Similarity=0.291 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhcc-ccccc-hHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 000149 510 AEDLSLQKQALKRIEILIEMIGS-HLTTY-VPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAA 587 (2037)
Q Consensus 510 ~~~~~~k~~~l~sl~~li~l~g~-~v~~~-~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~ 587 (2037)
+++...|.+++..|.+.++-+.+ .++.- +.=++..+.+-|....--..+++.-..+++ .....++....++..++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~- 87 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ- 87 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH-
Confidence 45677888899999998888765 44432 233445566666655555556777777774 333344444444444443
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHH
Q 000149 588 LIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQL 657 (2037)
Q Consensus 588 lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l 657 (2037)
..+- +..+..+|..+.+|++.|+.++.+.++ .+.. .-+..+++...|..|++--+
T Consensus 88 ---~~~~-q~~~q~~R~~~~~ll~~l~~~~~~~l~----------~~~~-~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 88 ---NVDV-QSLPQSTRYAVYQLLDSLLENHREALQ----------SMGD-DFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred ---hCCh-hhhhHHHHHHHHHHHHHHHHHhHHHHH----------hchh-HHHHHHHHHhccCCCHHHHH
Confidence 2221 122345689999999999998887762 1111 12445666666666666443
No 319
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.60 E-value=1.2e+02 Score=32.64 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=22.7
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000149 659 AAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 659 ~~~~rl~~en~~Vr~~aL~eL~~~L~~~ 686 (2037)
..++-++|+|+.||++||..+..++..+
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4567778999999999999999887654
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=25.51 E-value=1.3e+02 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
|+++..+|+-....|+ .+++.+.|+++++++|.
T Consensus 1 a~~~~~lg~~y~~~~~--~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGD--YEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 4678888888877765 88999999999998873
No 321
>PLN02789 farnesyltranstransferase
Probab=25.39 E-value=1.4e+03 Score=28.62 Aligned_cols=139 Identities=10% Similarity=-0.019 Sum_probs=87.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
++-.+.|=-+-.+-.+.++.+.|.....++...++.+ +-..++.++-+.|. ..+|+..+++++..++.
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--------- 104 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--------- 104 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---------
Confidence 3445566556666677889999999999988877655 44467778888874 58899988888764321
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV 1502 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~ 1502 (2037)
+ -| +..-.+--+...+....++....+.++++.+|+...+|++-|--+.++-
T Consensus 105 ----------n-------yq----------aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~- 156 (320)
T PLN02789 105 ----------N-------YQ----------IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG- 156 (320)
T ss_pred ----------c-------hH----------HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-
Confidence 0 01 1111111112223222355678888999999999999988775544331
Q ss_pred HHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1503 DARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1503 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
-...++.+|-+++.....+
T Consensus 157 ---------------------~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 157 ---------------------GWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred ---------------------hHHHHHHHHHHHHHHCCCc
Confidence 0124677777777755443
No 322
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=25.18 E-value=3.9e+02 Score=32.70 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHH-cCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1349 GNCWLQYAKLCRL-AGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1349 ~~~WL~~AklARK-ag~~~~A~~aLl~a~~~--~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
-..|+.+|.+=.+ ++..+.|.+-...+... ..+..-+.|++.|-..|+...|=..+++++..++.+
T Consensus 35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~----------- 103 (280)
T PF05843_consen 35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKE----------- 103 (280)
T ss_dssp THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH-----------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch-----------
Confidence 3569999999777 67777788877776554 356788899999999999999999999887532210
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. .....+..+.+|=..-| +.+.+.+.++.+.++.+...
T Consensus 104 ---------------------~-~~~~iw~~~i~fE~~~G--dl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 104 ---------------------K-QSKKIWKKFIEFESKYG--DLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp ---------------------H-HCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTTS-
T ss_pred ---------------------h-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhhh
Confidence 0 01223444444444444 57888888888888888743
No 323
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=25.06 E-value=9.3e+02 Score=31.69 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=42.0
Q ss_pred HHHHHHHhhhccc-----chhHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHhhhhc
Q 000149 263 ESTAELMMAVDVH-----SQHFLFLLILLVEQLDN-PHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 263 ~~~~~i~~~~~~~-----~e~~~~~l~~Li~~L~~-~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
+...+|.+..-.+ .|-|.-.|..++|-|+. .+.+++..|.+-|..+|+++-.
T Consensus 306 ~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 306 EALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4455555544445 67788889999999999 9999999999999999988755
No 324
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=24.97 E-value=8.2e+02 Score=32.26 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHH---------------
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQ--------------- 1188 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~--------------- 1188 (2037)
+-..++-.+|.+.+++++...|++.-.++.+=+.|.+.|+++......+....+.|+....|..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 45788999999999999999999866666666789999999876666665555556554444433
Q ss_pred -HHHHHHhcCChhhHHHHhhccc
Q 000149 1189 -GVQAAWRLGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1189 -~~EAAWrlg~Wd~lee~l~~~~ 1210 (2037)
..|+.-..|+|+.-.+++....
T Consensus 430 A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 430 ARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 2466677778877666655443
No 325
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.96 E-value=2.1e+03 Score=30.33 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=146.1
Q ss_pred cCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCCh
Q 000149 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSL 1117 (2037)
Q Consensus 1038 L~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l 1117 (2037)
-..|.+.-+|++|..||...=|...+|.+-+.. .++..|- +|++.|.+-+=.......++
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~----------------~qV~lLL----~m~~~~~AL~kaies~d~~L 564 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSG----------------EQVPLLL----KMKDSSLALKKAIESGDTDL 564 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCcc----------------chhHHHh----ccchHHHHHHHHHhcCCchh
Confidence 356889999999999999999999999864432 2233333 45677766665544445677
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
..+++-|-+. ..+.+.|.+.+...|..+..+...+|=..+-+-++ +.+ ..+....++.+.+++....
T Consensus 565 i~~Vllhlk~---~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d--------~y~-q~dn~~~~a~~~~q~~~~~- 631 (829)
T KOG2280|consen 565 IIQVLLHLKN---KLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYD--------FYN-QDDNHQALASFHLQASYAA- 631 (829)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhh--------hhh-cccchhhhhhhhhhhhhhh-
Confidence 7777776542 45667777888877877665544444111111111 000 0111223334444432211
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHH-HHHHH-HHH-HHhhhhhhhchhhHH--hhhH
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVS-DKIGV-SKQ-VLIAPLAAAGMDSYT--RAYP 1272 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~-~~I~~-aR~-~l~~~L~a~~~eSy~--r~y~ 1272 (2037)
+.++. +...+-.+-.+..+....++. +.++. .|. .+..+|..--..|+. ..++
T Consensus 632 --~~~~~--------------------r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~d 689 (829)
T KOG2280|consen 632 --ETIEG--------------------RIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHD 689 (829)
T ss_pred --hhhcc--------------------cchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHH
Confidence 11111 111111122222222221222 12221 111 011122111111111 2345
Q ss_pred HHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHH
Q 000149 1273 FIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCW 1352 (2037)
Q Consensus 1273 ~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~W 1352 (2037)
.+.+|=...+...+.++..+-.. ++ ...|--++..+ .+...|+.|..+=+.-=+|.+ +
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fki---------pd----Kr~~wLk~~aL-a~~~kweeLekfAkskksPIG--------y 747 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKI---------PD----KRLWWLKLTAL-ADIKKWEELEKFAKSKKSPIG--------Y 747 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCC---------cc----hhhHHHHHHHH-HhhhhHHHHHHHHhccCCCCC--------c
Confidence 66666555555555554432110 01 01244444433 345778888777554334544 3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHH
Q 000149 1353 LQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAE 1403 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~ 1403 (2037)
.-|-..|-|+|+.+.|..++-+...+. |.-+++-..|...+|++.
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHH
Confidence 567889999999999999998874332 777777788888888764
No 326
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=1.5e+02 Score=35.92 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=48.5
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH-HHHhhhhhccch
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM-VTHVDGLISRIP 1179 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~l-l~~~~gl~~~~p 1179 (2037)
+..|+..|...|||++|++.-+.+|.++++..+...+++.|-.-+|--..+ -.+...+....|
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 445667788999999999999999999999999999999999888886433 333444433444
No 327
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.74 E-value=1.3e+03 Score=32.84 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=46.3
Q ss_pred HHHHHHHHh--hhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhh
Q 000149 262 LESTAELMM--AVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRL 339 (2037)
Q Consensus 262 l~~~~~i~~--~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l 339 (2037)
+.++|.+.. +.....+ +..++..+++.++.+++.++.+|.+=++.+|..++-+ ++--.| ++=.+|+|+-+
T Consensus 569 ld~I~~~a~~~g~~F~~~-L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~------s~~~lI-~en~DYlv~sl 640 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPE-LMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG------SPPHLI-RENVDYLVNSL 640 (1014)
T ss_pred hhhhHHHHHHhHHHHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC------ChHHHH-HhhhHHHHHHH
Confidence 445555521 1223333 3367778999999999999999999999999988543 222123 34457766644
No 328
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=24.42 E-value=1.3e+03 Score=33.30 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1454 LLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1454 ~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
+..+|..+.+.++ +.+++.+.|..|.+++|+---+|-.||.+|.+
T Consensus 39 ~vFLGvAl~sl~q-~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 39 QVFLGVALWSLGQ-DLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred hhHHHHHHHhccC-CHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 4455666656665 38899999999999999999999999999987
No 329
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.31 E-value=1.2e+03 Score=33.91 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHHhhc------HHHHHHHHhccC
Q 000149 656 QLLAAVDGLNHENLNVRYMVVCELSKLLKLK------SEDVTALINGEA 698 (2037)
Q Consensus 656 ~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~------~~~l~~~~~~e~ 698 (2037)
.+..|..|+..-|+.||..+|+=..++.++| ..++-.++.|..
T Consensus 360 ~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl 408 (1251)
T KOG0414|consen 360 LLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRL 408 (1251)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhccc
Confidence 4566777777777777777777777766543 344555555543
No 330
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.24 E-value=1.4e+02 Score=34.54 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+...+-..|+|.+|...|+......|.+. +.++.+..|+.+.|+|+......+.+....|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45567789999999999999998888753 45567778888889998887777777766664
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.03 E-value=5.8e+02 Score=29.87 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1353 LQYAKLCRLAGHYETATRAILEAQASG-AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~a~~~~-~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
|..||..=.+|.++.|..-|..+.... +. -+.+.-|+++.++|+.++|+..|.+.-..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----------------- 155 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----------------- 155 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-----------------
Confidence 778999999999999999888876443 22 25777899999999999999999753210
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~ 1484 (2037)
--.+....+.|.-+...|. ..++++.|.+|.+..+
T Consensus 156 --------------------~w~~~~~elrGDill~kg~--k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 156 --------------------SWAAIVAELRGDILLAKGD--KQEARAAYEKALESDA 190 (207)
T ss_pred --------------------cHHHHHHHHhhhHHHHcCc--hHHHHHHHHHHHHccC
Confidence 0124455666666655554 7889999999988753
No 332
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=24.00 E-value=1.5e+03 Score=29.15 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCChhhhhHHHHHHH------------HHHhhhhhcCC-CC---hHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH
Q 000149 485 NEDLPGFLRNHFVGL------------LNSIDRKMLHA-ED---LSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMH 547 (2037)
Q Consensus 485 ~~~~~~fl~~~~LGi------------l~~~~~~l~~~-~~---~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~s 547 (2037)
++.+.+||+--.+.+ ++++|++++-. .+ .+.|.+-|+++.+|...... .....+|.|.-.|..
T Consensus 211 ~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~ 290 (460)
T KOG2213|consen 211 ADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKE 290 (460)
T ss_pred hHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHH
Confidence 344566665443332 46777766432 33 44567889999999988854 567788999999998
Q ss_pred HhcCC
Q 000149 548 AINKE 552 (2037)
Q Consensus 548 aL~~~ 552 (2037)
.+..+
T Consensus 291 yMpa~ 295 (460)
T KOG2213|consen 291 YMPAP 295 (460)
T ss_pred hcccC
Confidence 88654
No 333
>smart00090 RIO RIO-like kinase.
Probab=23.93 E-value=53 Score=39.16 Aligned_cols=28 Identities=32% Similarity=0.365 Sum_probs=23.7
Q ss_pred cCCCCCCceeEecCCCcEEEeecccccccC
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLFDKG 1961 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f~~g 1961 (2037)
=||=||+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 369999999998 8999999999876444
No 334
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=23.90 E-value=4.4e+02 Score=37.43 Aligned_cols=109 Identities=25% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhc
Q 000149 1775 DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISC 1854 (2037)
Q Consensus 1775 dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~ 1854 (2037)
||+ +++.|| .+++-|+.+.+|+..+|.-.... .+++++|+.-+ +.|-.|+|+... +
T Consensus 112 ~g~--kivYKP-r~l~~d~~f~~~l~~ln~~~~~~--------~~~~~~~l~~~-~ygw~EfI~~~~------------c 167 (825)
T cd04792 112 SGL--KLVYKP-RSLSVDALFQELLEWLNSFLGAL--------PLRTPKVLDRG-DYGWEEFIEHQP------------C 167 (825)
T ss_pred CCC--EEEECC-CCchHHHHHHHHHHHHHhcCCcc--------ccccceeeecC-CcceEEeecCCC------------C
Confidence 454 366786 67999999999999998764332 24677777655 689999998631 0
Q ss_pred CCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 000149 1855 GKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGD 1934 (2037)
Q Consensus 1855 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGD 1934 (2037)
. ...++ .+|=+-++.+-.+.|+|+-.|
T Consensus 168 ~------~~~e~-----------------------------------------------~~fY~r~G~llal~y~L~~tD 194 (825)
T cd04792 168 Q------SKEEV-----------------------------------------------ERYYYRLGGLLALLYLLNATD 194 (825)
T ss_pred C------CHHHH-----------------------------------------------HHHHHHHHHHHHHHHHcCCcc
Confidence 0 00011 112223667778999999999
Q ss_pred CCCCceeEecCCCcEEEeecccccccCC
Q 000149 1935 RHGENILFDSTTGDCVHVDFSCLFDKGL 1962 (2037)
Q Consensus 1935 RH~eNILid~~tG~vvHIDF~~~f~~g~ 1962 (2037)
=|-|||.-+ -+.-|=||+=.+|....
T Consensus 195 ~H~ENiIA~--g~~PvlIDlETlf~~~~ 220 (825)
T cd04792 195 LHFENIIAS--GEYPVLIDLETLFHPRL 220 (825)
T ss_pred cchhhheee--CCCceEEeeHHhcCCCc
Confidence 999999554 56778899988886543
No 335
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.86 E-value=7.8e+02 Score=30.87 Aligned_cols=117 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH---hccCChhH--
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL---HKSLSLQD-- 1119 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~---r~~~~l~~-- 1119 (2037)
+|+++=.+-+.-.|||.-+-+-++.-. +....+--...||..+++.|...-+.+. .+..+++.
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~fP------------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSFP------------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcCC------------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 889999999999999998876554321 1223345567889999888887776552 22222221
Q ss_pred -HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1120 -ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1120 -qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
-...|-+.|+-+.|+.+|.+.||+.-.+.+.-.++=-|...-+|+|.++....-
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 234688999999999999999999888877666666688888999987765543
No 336
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=23.63 E-value=5e+02 Score=30.41 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHccCCcccCccceeccceeeEe--CCCceeeEecCCCccHHHHHHHH
Q 000149 1793 SRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPL--TEDCGMVEWVPHTRGLRNILQDI 1850 (2037)
Q Consensus 1793 ~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPL--s~~~GLIEwv~n~~sl~~i~~~~ 1850 (2037)
.|..|=.++++++ +.+-|..+.++-. +.++=.+||+++..++++.+...
T Consensus 55 ~Rt~~Ear~l~k~---------~~~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~ 105 (229)
T KOG3087|consen 55 KRTKQEARLLAKC---------RALGIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILST 105 (229)
T ss_pred HHHHHHHHHHHHH---------HHhCCCCceEEEEecCCCeEEEEeccchhHHHHHHHHH
Confidence 4455555555554 3467888888885 44555789999998888776654
No 337
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=23.49 E-value=62 Score=38.38 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.6
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=||=||+|++++ .|.+.-|||++-
T Consensus 158 HGD~hpgNFlv~--~~~i~iID~~~k 181 (229)
T PF06176_consen 158 HGDPHPGNFLVS--NNGIRIIDTQGK 181 (229)
T ss_pred cCCCCcCcEEEE--CCcEEEEECccc
Confidence 599999999997 677999999643
No 338
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=23.27 E-value=1.6e+03 Score=28.33 Aligned_cols=97 Identities=18% Similarity=0.333 Sum_probs=59.9
Q ss_pred hHHHHHHhhhcCC-CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH------Hhccccccc--hHHHH
Q 000149 472 PRVIRKVSTVLTG-NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE------MIGSHLTTY--VPKIL 542 (2037)
Q Consensus 472 ~~~~~~~~~~~~~-~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~------l~g~~v~~~--~pqI~ 542 (2037)
.+|++..-..++. .-.+++||..|.=-.-.....+++++...-.|++++..+|+++- +|-.+|++. +-=+|
T Consensus 184 sdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM 263 (342)
T KOG1566|consen 184 SDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMM 263 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHH
Confidence 4555554444443 34567888888765544546678888778889999999999753 444455532 22233
Q ss_pred HHHHHHhcCCCcchhhhHHHHHHHHHhc
Q 000149 543 VLLMHAINKESLQCEGLSVLHFFIEQLS 570 (2037)
Q Consensus 543 a~L~saL~~~~L~~~~l~~W~~fv~~L~ 570 (2037)
-.|+-- ....+..||.+..+||.+-+
T Consensus 264 ~llrdk--skniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 264 NLLRDK--SKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhhCc--cccchHHHHHHHHHHhcCCC
Confidence 333321 34567777777777777754
No 339
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=5.8e+02 Score=31.77 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=72.6
Q ss_pred ccCCChhhHHHHHHHhhcc--------cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHH
Q 000149 140 NFHSDFSFLLNIYFEFLYD--------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFC 211 (2037)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~--------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~ 211 (2037)
..-.+-+.+.-.+..|=++ +.-.|-|--||.+|-|+++---+- -+. -++.--++.+|-++|..|.--+|
T Consensus 27 kealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakega-hla--pnlmpdLQrGLiaddasVKiLac 103 (524)
T KOG4413|consen 27 KEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGA-HLA--PNLMPDLQRGLIADDASVKILAC 103 (524)
T ss_pred HHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccch-hhc--hhhhHHHHhcccCCcchhhhhhH
Confidence 3334444555544444444 223346677999999999753311 111 12333678899999999999999
Q ss_pred HHHhHhhhhhhhhhhccccccccchhhHH-----HHHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 000149 212 TQIGYFLQDTVLSSLFLDENASSRSNELK-----LLDVIKLAFTAADDPLILETLLESTAELM 269 (2037)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~i~eTll~~~~~i~ 269 (2037)
+||.++++|. |-+..+..++ ++..|-+ .-..+|..+.-..++|+.+|.
T Consensus 104 kqigcilEdc---------DtnaVseillvvNaeilklild-cIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 104 KQIGCILEDC---------DTNAVSEILLVVNAEILKLILD-CIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhhHHHhcC---------chhhHHHHHHHhhhhHHHHHHH-HHcCCcHHHHHHHHHHHHHHH
Confidence 9999998443 2233343333 2222222 223678889999999999983
No 340
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.82 E-value=2.9e+02 Score=33.61 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHH
Q 000149 654 KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCA 733 (2037)
Q Consensus 654 ~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca 733 (2037)
.+++..|++.+..++.-.|.++ +.+.|+-... ..|..|...|++.-- .+-++-.||
T Consensus 186 EeaI~al~~~l~~~SalfrhEv----------------AfVfGQl~s~-~ai~~L~k~L~d~~E-------~pMVRhEaA 241 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEV----------------AFVFGQLQSP-AAIPSLIKVLLDETE-------HPMVRHEAA 241 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHH----------------HHHHhhccch-hhhHHHHHHHHhhhc-------chHHHHHHH
Confidence 5788899999988876666654 3455543322 368999999988532 246888999
Q ss_pred HhhcccCcc
Q 000149 734 DCLGALGAV 742 (2037)
Q Consensus 734 ~CLG~IGal 742 (2037)
+.||-||-=
T Consensus 242 eALGaIa~e 250 (289)
T KOG0567|consen 242 EALGAIADE 250 (289)
T ss_pred HHHHhhcCH
Confidence 999999843
No 341
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=22.66 E-value=61 Score=38.69 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.9
Q ss_pred cCCCCCCceeEecCCCcEEEeecccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCL 1957 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~ 1957 (2037)
=+|=+|+|||++. +|++.=||||.+
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~ 189 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRG 189 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCc
Confidence 4699999999984 789999999865
No 342
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=3e+03 Score=31.31 Aligned_cols=174 Identities=21% Similarity=0.245 Sum_probs=83.7
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHhcCCCcchhh-hHHHHH-HHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCch
Q 000149 523 IEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEG-LSVLHF-FIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPS 600 (2037)
Q Consensus 523 l~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~-l~~W~~-fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~ 600 (2037)
+..|..-+|.-++++.=|.+--|-.++.+ +..+ -+.... +-..+.-..|+.-..++. ..+-+++...+ +
T Consensus 1260 I~~L~~r~~~emtP~sgKll~al~~g~~d---RNesv~kafAsAmG~L~k~Ss~dq~qKLie---~~l~~~l~k~e---s 1330 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGKLLRALFPGAKD---RNESVRKAFASAMGYLAKFSSPDQMQKLIE---TLLADLLGKDE---S 1330 (1702)
T ss_pred HHHHHHHhccccCcchhHHHHHHhhcccc---ccHHHHHHHHHHHHHHHhcCChHHHHHHHH---HHHHHHhccCC---C
Confidence 44455567778888888877777777643 2222 222222 222222122233444444 34445565332 1
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhc------------CCC--CHHHHHHHHHhhccC
Q 000149 601 VLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEAR------------GPM--TLKDQLLAAVDGLNH 666 (2037)
Q Consensus 601 ~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r------------~~~--~l~~~l~~~~~rl~~ 666 (2037)
.. +++..++-.+-....+.|++|-+.+-++--+-...+ .+..++.. |.. ...+.+...+..+.+
T Consensus 1331 ~~-siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~n 1408 (1702)
T KOG0915|consen 1331 LK-SISCATISNIANYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITN 1408 (1702)
T ss_pred cc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhcc
Confidence 11 445554444434456888888666543333222211 22222211 111 234556666655554
Q ss_pred CC-hhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhh
Q 000149 667 EN-LNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCA 717 (2037)
Q Consensus 667 en-~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~ 717 (2037)
+. -.++-++.+.++-.- .-..+.. +.|+|..|..+++++-.
T Consensus 1409 n~~w~lr~q~Akai~~~a--------~~~sss~--~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1409 NESWKLRKQAAKAIRVIA--------EGLSSSA--PIPVILKLALSLLDTLN 1450 (1702)
T ss_pred chHHHHHHHHHHHHHHHc--------ccccccC--ChHHHHHHHHHHHHHhh
Confidence 44 445666655544221 1111111 23689999999998854
No 343
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=22.38 E-value=44 Score=41.81 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHhcc----CCCCCCceeEecCCCcEEEeeccccc
Q 000149 1923 WSMVGHIVGL----GDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1923 ~SmvgYILgL----GDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
.+-++|+=.. .|--|||||+| ..|+|.=.|||.+=
T Consensus 135 ~lAL~~LH~~gIiyRDlKPENILLd-~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 135 VLALGYLHSKGIIYRDLKPENILLD-EQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHHhCCeeeccCCHHHeeec-CCCcEEEeccccch
Confidence 3445665433 58899999999 79999999999874
No 344
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.31 E-value=2.2e+03 Score=29.70 Aligned_cols=371 Identities=18% Similarity=0.216 Sum_probs=186.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHH-
Q 000149 273 DVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAE- 351 (2037)
Q Consensus 273 ~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e- 351 (2037)
..+.|++...+=+|=+.|+|.+=.+|-.+.--+=.+|+-+-+|.+ ++. ++|.+|++..|-.+--.+|.+++
T Consensus 385 vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~----p~L----peLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 385 VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFV----PHL----PELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcc----cch----HHHHHHHHHHhccCccceeeeeee
Confidence 357788888888899999999999999999999999999998866 444 57788877766655444444333
Q ss_pred -------HHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHH
Q 000149 352 -------AAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLS 424 (2037)
Q Consensus 352 -------~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~ 424 (2037)
.+++-+.++|+...+.-.|-.++=+.|+. + |-.-+
T Consensus 457 TLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~V-------Q-------------------------------EAAcs 498 (885)
T KOG2023|consen 457 TLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKV-------Q-------------------------------EAACS 498 (885)
T ss_pred eHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHH-------H-------------------------------HHHHH
Confidence 22222333333333222222222111111 1 11112
Q ss_pred HHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhh
Q 000149 425 ALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSID 504 (2037)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~ 504 (2037)
++.-+..+.+.++-. .+..+|+.|++.+|- ++ +|-.-.+.+|+..+|......=.=+.|++--+=-+|..-+
T Consensus 499 AfAtleE~A~~eLVp----~l~~IL~~l~~af~k-YQ---~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 499 AFATLEEEAGEELVP----YLEYILDQLVFAFGK-YQ---KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHhccchhHH----HHHHHHHHHHHHHHH-Hh---hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHH
Confidence 222233333333321 223344445443332 11 1223345677777775543333344555554444454443
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHH----HHHHHHHhc--------------CCCcchhhhHHHHHHH
Q 000149 505 RKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI----LVLLMHAIN--------------KESLQCEGLSVLHFFI 566 (2037)
Q Consensus 505 ~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI----~a~L~saL~--------------~~~L~~~~l~~W~~fv 566 (2037)
++..+|... -=-+.++..+-.-+|..--++.+.+ |..|+++++ ..++--.++.-.+-++
T Consensus 571 --~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 571 --LLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred --hcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence 122222111 1123344444455665444444332 222333321 1234444555555555
Q ss_pred HHhccCCCcchhhHHHH--HHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHH
Q 000149 567 EQLSRVSPSSTKHVISQ--VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAI 644 (2037)
Q Consensus 567 ~~L~~~~~~~l~~ll~~--i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l 644 (2037)
+-|. +++++++.+ +...+..... +.....++-+..+|--|..-.-+.+. |
T Consensus 648 egLg----~~ie~Lva~snl~~lll~C~~---D~~peVRQS~FALLGDltk~c~~~v~---------p------------ 699 (885)
T KOG2023|consen 648 EGLG----SHIEPLVAQSNLLDLLLQCLQ---DEVPEVRQSAFALLGDLTKACFEHVI---------P------------ 699 (885)
T ss_pred HHhh----hchHHHhhhccHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHhcc---------c------------
Confidence 5543 344444432 3333433332 22234566666666655444333332 1
Q ss_pred HHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccc
Q 000149 645 QEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVV 724 (2037)
Q Consensus 645 ~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~ 724 (2037)
.+.+.+..+...++.|+.+|..-|.-.+.++--+-..+.+ +.|+.++..|.-.-.. ...
T Consensus 700 -------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~-----------~~v~~vl~~L~~iin~---~~~ 758 (885)
T KOG2023|consen 700 -------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK-----------QYVSPVLEDLITIINR---QNT 758 (885)
T ss_pred -------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh-----------hHHHHHHHHHHHHhcc---cCc
Confidence 1223344445667778888877766666554322222222 2344444444332222 222
Q ss_pred hhhHHHHHHHhhcccCccCcccccc
Q 000149 725 GQKLKLVCADCLGALGAVDPAKVKG 749 (2037)
Q Consensus 725 ~~~I~~lca~CLG~IGalDp~r~~~ 749 (2037)
...+.+-.|--+|.+|-+=|.-+..
T Consensus 759 ~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 759 PKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred hHHHHHhhhhhhhhhhccCHHhcch
Confidence 3578888999999999999987764
No 345
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.07 E-value=5.1e+02 Score=36.28 Aligned_cols=176 Identities=21% Similarity=0.142 Sum_probs=104.7
Q ss_pred HHhhhcccchhhhhhhhhhchhhhhhhcCcc--chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 8 ILDLALRDEFDEVRAEAVISLPVIVMWSGLG--VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
.+...+.|---+||.-|+..+|..+..-|.. ...-+++.|...+.+ +=.++.++.+++-.++=..|.-
T Consensus 522 l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~e--------- 591 (759)
T KOG0211|consen 522 LLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQE--------- 591 (759)
T ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccH---------
Confidence 3444455656678888888888888887733 334455555555554 3445555555544443333322
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000149 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2037)
+.+. ++-+ ++.-+-..+..+|+
T Consensus 592 --------------------------------i~~~-------------------------~Llp-~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 592 --------------------------------ITCE-------------------------DLLP-VFLDLVKDPVANVR 613 (759)
T ss_pred --------------------------------HHHH-------------------------HHhH-HHHHhccCCchhhh
Confidence 2111 1333 44445566778999
Q ss_pred HHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHH
Q 000149 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2037)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2037)
..+...|.+|++-...++. .+.....+++|..|.+.+||.+|=-+......... -+.......+-
T Consensus 614 ~nvak~L~~i~~~L~~~~~---~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~------------~~~~d~~~~~~ 678 (759)
T KOG0211|consen 614 INVAKHLPKILKLLDESVR---DEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL------------ESSLDVRDKKQ 678 (759)
T ss_pred hhHHHHHHHHHhhcchHHH---HHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH------------hhhHHHHHHHH
Confidence 9999999999999886643 23344688999999999999988555555321111 12223333444
Q ss_pred HHHhhhcCChhHHHHHHHHHHH
Q 000149 246 KLAFTAADDPLILETLLESTAE 267 (2037)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~ 267 (2037)
..++. -.|.+..|+-.+.+.-
T Consensus 679 ~~a~~-~~~~~~~~~~~~~~~~ 699 (759)
T KOG0211|consen 679 LIAFL-EQDSHVLEVEIIKTKL 699 (759)
T ss_pred HHHHH-hhhhHHHHHHHHHHHh
Confidence 45555 3445577776666544
No 346
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=22.01 E-value=1.1e+02 Score=27.20 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCch
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~ 182 (2037)
.|+.+++.+++++|-.+..+ +...+.+|..+|+.++.+
T Consensus 2 ~n~eYLKNVll~fl~~~e~~--r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESE--RETLLKVISTVLQLSPEE 39 (46)
T ss_pred ccHHHHHHHHHHHhccCcch--HHHHHHHHHHHhCCCHHH
Confidence 47899999999999886654 778899999999998755
No 347
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.75 E-value=3.9e+02 Score=32.17 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=52.6
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
-...++.+|..||-+++-..|....+..+-.-|.+++.+|+.+..-... ..++.+-.+.+-..+|+|-..
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrr--------alql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRR--------ALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHH--------HHhcChHHHHHHHHHHHHHHh
Confidence 3456789999999999999999888888888999999999976543332 233445556677778888653
No 348
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.74 E-value=3e+03 Score=31.17 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=84.2
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh
Q 000149 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA 251 (2037)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (2037)
+-.+|.|+++= ..-+...++.|-++|..+.-+||--|=+-++.++ +.. ...-. ...+..-+-..+.+
T Consensus 800 i~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~iv---------e~D-p~vL~-~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 800 IVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIV---------EAD-PSVLS-RPDVQEAVHGRLND 866 (1692)
T ss_pred HHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---------hcC-hHhhc-CHHHHHHHHHhhcc
Confidence 34445554421 1124457777788889999999988877777765 111 11111 12222222233333
Q ss_pred cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 252 ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
..-+ |.|+.|+-||+- +....|+...-.-++++..--+..+||==|...+..+|...
T Consensus 867 ssas-VREAaldLvGrf---vl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 867 SSAS-VREAALDLVGRF---VLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred chhH-HHHHHHHHHhhh---hhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 3334 999999999985 56689999999999999999999999999999999997665
No 349
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=21.60 E-value=4.4e+02 Score=35.63 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred chhHHHHhhhcccchh-hhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccc
Q 000149 3 ESDSEILDLALRDEFD-EVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVD 81 (2037)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (2037)
++...+.+|-...+.. ...++++.++|-.+..-.+..+..+|.-+++-.-.....++.+.-.++|=|. +..|.....
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv--~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV--RRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH--HHHhcCCCC
Q ss_pred ccccccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc--cc
Q 000149 82 WDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY--DE 159 (2037)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 159 (2037)
.+ ......-..++.+++.=.++++.. .+...-| .-.-|..-+..-..+-.+++ ++
T Consensus 435 ~~-----------~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~L---------kaLGN~g~~~~i~~l~~~l~~~~~ 491 (574)
T smart00638 435 CP-----------DFVLEELLKYLHELLQQAVSKGDE---EEIQLYL---------KALGNAGHPSSIKVLEPYLEGAEP 491 (574)
T ss_pred CC-----------hhhHHHHHHHHHHHHHHHHhcCCc---hheeeHH---------HhhhccCChhHHHHHHHhcCCCCC
Q ss_pred CccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh
Q 000149 160 SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2037)
Q Consensus 160 ~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2037)
.+..++++.+.+|+|+-++...-+ =-..+..++ .+.+-+||.||.-.+-. ..-.
T Consensus 492 ~~~~iR~~Av~Alr~~a~~~p~~v-------~~~l~~i~~n~~e~~EvRiaA~~~lm~------------------t~P~ 546 (574)
T smart00638 492 LSTFIRLAAILALRNLAKRDPRKV-------QEVLLPIYLNRAEPPEVRMAAVLVLME------------------TKPS 546 (574)
T ss_pred CCHHHHHHHHHHHHHHHHhCchHH-------HHHHHHHHcCCCCChHHHHHHHHHHHh------------------cCCC
Q ss_pred HHHHHHHHHHhhhcCChhHH
Q 000149 239 LKLLDVIKLAFTAADDPLIL 258 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~ 258 (2037)
...|.+|.+.+..=.+.||.
T Consensus 547 ~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 547 VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred HHHHHHHHHHHhhcCcHHHH
No 350
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.41 E-value=89 Score=27.78 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCch
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~ 182 (2037)
.|+.+++.+++++|.... ...+-..+.+|..+|+.+..+
T Consensus 3 ~~~eYLKNvl~~fl~~~~-~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESRE-PSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS----HHHHHHHHHHHTT--HHH
T ss_pred hhHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHCCCHHH
Confidence 578899999999999876 566777889999999997754
No 351
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=21.24 E-value=2e+03 Score=28.72 Aligned_cols=115 Identities=10% Similarity=0.110 Sum_probs=64.5
Q ss_pred hhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCc--hhhhh----hhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 146 SFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR--DVLLK----TRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~--~~~~~----~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
+..-.+|.++|.+-+-+++.-.+..-+..+|.-.+. ....+ ....|..=+. +|.+.|..+-..++.-+..++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~-lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN-LLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH-HHcCCchhHHHHHHHHHHHHHh
Confidence 556677888887755555443333333333322210 00000 0122332233 4477888888888888887662
Q ss_pred hhhhhhhcccccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 220 DTVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
.+.. ..+.....++.-+...+....++..+.+++-+++.+.+
T Consensus 131 ---------~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~ 173 (429)
T cd00256 131 ---------FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR 173 (429)
T ss_pred ---------cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC
Confidence 2211 22233344666777777766677788888888888754
No 352
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.15 E-value=3.4e+02 Score=39.06 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=75.2
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHhhhhccCccccc
Q 000149 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLD-NPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2037)
Q Consensus 243 ~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~-~~n~~~~~~a~~~i~~la~~~~~~~~~l~~ 321 (2037)
-.+++....-.||.++-+.-.++|..|- +..+..-+.+=+|+.-+- +|++.||.++.--+-.+|-.-
T Consensus 925 ~e~c~n~~~~sdp~Lq~AAtLaL~klM~---iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~f--------- 992 (1251)
T KOG0414|consen 925 VEGCRNPGLFSDPELQAAATLALGKLMC---ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF--------- 992 (1251)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc---------
Confidence 3334333345889999999999999875 256666677777888887 999999998887666663322
Q ss_pred chhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcC
Q 000149 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLN 395 (2037)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~ 395 (2037)
++.. ++.-+++-.++.---. .++++--.||-|||+.- .+.+++.|-+.|.++-
T Consensus 993 pnli---e~~T~~Ly~rL~D~~~----------------~vRkta~lvlshLILnd--miKVKGql~eMA~cl~ 1045 (1251)
T KOG0414|consen 993 PNLI---EPWTEHLYRRLRDESP----------------SVRKTALLVLSHLILND--MIKVKGQLSEMALCLE 1045 (1251)
T ss_pred cccc---chhhHHHHHHhcCccH----------------HHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhc
Confidence 1110 2223344444444344 44444445778888873 2334566777777544
No 353
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=21.00 E-value=3.5e+02 Score=28.82 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1353 LQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~a~~~~~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+..|+.|+++|.+++|...|.+|.-++-+. ...---++-|.+++..+++-.+=..+-
T Consensus 13 l~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~GQ~~Rl~~ 75 (112)
T PF12487_consen 13 LEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVLGQLLRLIV 75 (112)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788999999999999999999998776443 344556777999999998876665544
No 354
>PRK10941 hypothetical protein; Provisional
Probab=20.79 E-value=2e+02 Score=35.15 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhh--hhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRH--SDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~--~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
..|.+.++|+.|+.|.|+.+...|++.... -|++ +.+||+|+....-.+-.....|
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll--~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLI--YAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHHHHHHHHHhCC
Confidence 457899999999999999999999876422 3444 6788888766543333333333
No 355
>PRK12274 serine/threonine protein kinase; Provisional
Probab=20.55 E-value=74 Score=37.55 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCC-CCCceeEecCCCcEEEeeccccc
Q 000149 1933 GDR-HGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1933 GDR-H~eNILid~~tG~vvHIDF~~~f 1958 (2037)
+|- .|+|||++ .+|++.=||||..-
T Consensus 115 rDL~kp~NILv~-~~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQ-EDGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEc-CCCCEEEEECCCce
Confidence 788 68999998 58999999999874
No 356
>PRK04841 transcriptional regulator MalT; Provisional
Probab=20.44 E-value=2.6e+03 Score=29.85 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=65.9
Q ss_pred HHHcCChHHHHHHHHHHhhcC--CCh----HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASG--APN----VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPL 1432 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~--~p~----~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~ 1432 (2037)
.+..|..+.|...+....... .+. ...-.|+++...|+..+|...+++++....
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~-------------------- 722 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENAR-------------------- 722 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------
Confidence 344677777777665543211 111 134678899999999999999998875210
Q ss_pred CCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1433 NPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1433 ~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
........+++++++|.++...|+ .+++...+.+|.++....
T Consensus 723 ----------~~g~~~~~a~~~~~la~a~~~~G~--~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 723 ----------SLRLMSDLNRNLILLNQLYWQQGR--KSEAQRVLLEALKLANRT 764 (903)
T ss_pred ----------HhCchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCcc
Confidence 000123568899999999988887 788899999999887643
No 357
>PRK11906 transcriptional regulator; Provisional
Probab=20.41 E-value=1e+03 Score=31.41 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHH-cCChH------HHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccc
Q 000149 1347 EVGNCWLQYAKLCRL-AGHYE------TATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVG 1417 (2037)
Q Consensus 1347 ~~~~~WL~~AklARK-ag~~~------~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g 1417 (2037)
..+-+|+.+.+..|+ .|-.+ .|.....+|-.++ +|.+..--+.++|..|+.+.|+..+++++.-+
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------ 368 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS------ 368 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------
Confidence 345678888888883 33333 2333344444443 56677778888999999999999999886411
Q ss_pred ccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1418 STAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1418 ~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
| ..|-++...|--.--.|+ .++......+|.++.|.-.++
T Consensus 369 -------------P-----------------n~A~~~~~~~~~~~~~G~--~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 369 -------------T-----------------DIASLYYYRALVHFHNEK--IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred -------------C-----------------ccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCchhhHH
Confidence 1 124556666654445565 788888889999999976543
No 358
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.06 E-value=6.8 Score=58.55 Aligned_cols=196 Identities=7% Similarity=-0.086 Sum_probs=126.3
Q ss_pred CCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCc
Q 000149 1762 SLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTR 1841 (2037)
Q Consensus 1762 S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~ 1841 (2037)
+...+|..+-.++++.......|..+++|+++-.++- ...|+ +.|.+.+-...|.++++..+-+|-+|+.|+.
T Consensus 2174 ~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~-~~~~~------~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl 2246 (2806)
T KOG0892|consen 2174 EDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRK-NHHVR------VQRQLILDEEELLALSEDRSKFLTLALTNYL 2246 (2806)
T ss_pred hHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHH-HHHHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567788888888888877778889999999888875 22333 3445667889999999999999999988875
Q ss_pred cHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcC--CCh-hHHHHHhhc----CCCchhHHHHHHH---hCCChhHHHH
Q 000149 1842 GLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGK--IPE-DEMLKTKIL----PMFPPVFHKWFLT---TFSEPAAWFR 1911 (2037)
Q Consensus 1842 sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~----~~~ppvl~~~f~~---~f~~p~~w~~ 1911 (2037)
.--+.-.++ ....+.|...-+-.. ..+ -..+++++. .+|=|++++.--+ .+.++-.|..
T Consensus 2247 ~cl~~~~~~-----------D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L 2315 (2806)
T KOG0892|consen 2247 NCLSESDEY-----------DVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSL 2315 (2806)
T ss_pred HHHhhcccc-----------cHHHHHHHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHH
Confidence 443332211 112233322111000 000 112333332 2455655554332 3456777999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhhH
Q 000149 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHFI 1989 (2037)
Q Consensus 1912 aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~~ 1989 (2037)
-+.-+..+.+.-.-.+|+|+.+++|.-+. .-+-.|.+ | ++.++.+|++|+.--|+ ++..++.++
T Consensus 2316 ~~Li~r~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~v 2380 (2806)
T KOG0892|consen 2316 TSLIYRVGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQL 2380 (2806)
T ss_pred HHHHHHHhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHHH
Confidence 99999999999999999999888776651 11112222 2 67799999999998888 556665553
Done!