Query 000149
Match_columns 2037
No_of_seqs 413 out of 1427
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ls8_A Phosphatidylinositol 3- 100.0 6.2E-50 2.1E-54 508.1 32.3 415 1527-2021 63-568 (614)
2 2x6h_A GH13170P, VPS34, phosph 100.0 7.7E-49 2.6E-53 505.9 35.9 420 1526-2021 76-642 (696)
3 1e7u_A Phosphatidylinositol 3- 100.0 2.2E-49 7.6E-54 527.2 30.8 427 1527-2021 446-903 (961)
4 2wxf_A Phosphatidylinositol-4, 100.0 3.9E-49 1.3E-53 525.0 28.7 428 1527-2021 440-887 (940)
5 2y3a_A Phosphatidylinositol-4, 100.0 7.7E-49 2.6E-53 525.1 30.2 426 1527-2022 593-1040(1092)
6 3hhm_A Phosphatidylinositol-4, 100.0 2.6E-46 8.8E-51 496.4 28.3 426 1527-2021 586-1038(1091)
7 4fdd_A Transportin-1; heat rep 99.0 7.8E-06 2.7E-10 111.7 51.3 668 12-800 98-822 (852)
8 2bpt_A Importin beta-1 subunit 98.9 1.4E-05 4.6E-10 108.7 51.4 593 145-800 177-859 (861)
9 1u6g_C TIP120 protein, CAND1; 98.9 3.3E-06 1.1E-10 120.0 44.7 519 12-631 56-700 (1230)
10 4fdd_A Transportin-1; heat rep 98.8 3.1E-06 1E-10 115.7 36.8 545 11-619 181-788 (852)
11 1w3b_A UDP-N-acetylglucosamine 98.8 8.3E-06 2.8E-10 99.7 36.3 369 1046-1497 5-383 (388)
12 1u6g_C TIP120 protein, CAND1; 98.7 1.8E-05 6E-10 112.6 42.3 691 7-745 178-964 (1230)
13 1qgr_A Protein (importin beta 98.7 3.9E-05 1.3E-09 104.4 43.1 472 146-682 320-869 (876)
14 2bpt_A Importin beta-1 subunit 98.7 1.4E-05 4.8E-10 108.6 37.5 436 146-616 323-812 (861)
15 3ieg_A DNAJ homolog subfamily 98.6 7.9E-05 2.7E-09 88.5 37.5 325 1045-1500 8-353 (359)
16 1qgr_A Protein (importin beta 98.5 0.00019 6.3E-09 97.8 42.2 563 144-745 169-875 (876)
17 1b3u_A Protein (protein phosph 98.5 0.0011 3.6E-08 85.8 47.4 555 6-740 12-586 (588)
18 2xpi_A Anaphase-promoting comp 98.5 0.00012 4.1E-09 94.5 37.6 151 1044-1209 121-331 (597)
19 2y4t_A DNAJ homolog subfamily 98.5 0.00021 7.1E-09 88.6 37.3 326 1045-1500 31-376 (450)
20 3hym_B Cell division cycle pro 98.4 7.8E-05 2.7E-09 87.7 28.9 277 1120-1499 28-316 (330)
21 3ieg_A DNAJ homolog subfamily 98.4 0.00041 1.4E-08 82.2 35.2 306 1120-1542 9-339 (359)
22 2xpi_A Anaphase-promoting comp 98.4 0.00071 2.4E-08 87.3 38.9 394 1044-1542 88-549 (597)
23 1w3b_A UDP-N-acetylglucosamine 98.3 0.00049 1.7E-08 83.9 33.3 346 1121-1558 6-353 (388)
24 1b3u_A Protein (protein phosph 98.3 0.0003 1E-08 90.9 32.2 479 15-570 59-551 (588)
25 2gw1_A Mitochondrial precursor 98.1 0.00079 2.7E-08 84.6 31.7 262 1127-1493 202-489 (514)
26 2y4t_A DNAJ homolog subfamily 98.1 0.0011 3.9E-08 81.9 32.5 303 1121-1542 33-362 (450)
27 2gw1_A Mitochondrial precursor 98.0 0.0028 9.7E-08 79.5 32.2 379 1088-1542 8-448 (514)
28 3fp2_A TPR repeat-containing p 98.0 0.0018 6.1E-08 82.1 29.9 139 1350-1542 345-495 (537)
29 3fp2_A TPR repeat-containing p 97.8 0.0035 1.2E-07 79.3 29.7 166 1348-1558 309-476 (537)
30 1fch_A Peroxisomal targeting s 97.8 0.0017 5.7E-08 78.0 24.4 114 1349-1500 217-343 (368)
31 3uq3_A Heat shock protein STI1 97.7 0.0056 1.9E-07 68.9 26.3 110 1347-1494 137-254 (258)
32 3hym_B Cell division cycle pro 97.7 0.0079 2.7E-07 70.4 27.9 61 1349-1409 236-298 (330)
33 3cv0_A Peroxisome targeting si 97.6 0.0023 7.7E-08 75.0 21.8 260 1119-1500 26-299 (327)
34 2x1g_F Cadmus; transport prote 97.6 0.018 6.2E-07 79.7 33.9 196 512-745 706-910 (971)
35 3cv0_A Peroxisome targeting si 97.6 0.0026 8.7E-08 74.6 21.5 108 1349-1482 206-315 (327)
36 2x19_B Importin-13; nuclear tr 97.6 0.036 1.2E-06 76.6 36.1 148 512-686 698-848 (963)
37 4eqf_A PEX5-related protein; a 97.6 0.0026 8.9E-08 76.6 21.1 256 1119-1499 70-339 (365)
38 2vgl_B AP-2 complex subunit be 97.5 0.27 9.3E-06 64.2 40.6 462 148-741 50-532 (591)
39 4a1s_A PINS, partner of inscut 97.5 0.011 3.9E-07 72.0 25.6 110 1348-1489 262-379 (411)
40 3sf4_A G-protein-signaling mod 97.5 0.017 5.9E-07 69.7 26.6 122 1347-1500 225-360 (406)
41 2q7f_A YRRB protein; TPR, prot 97.4 0.0031 1.1E-07 70.7 17.3 109 1351-1497 127-237 (243)
42 3ro2_A PINS homolog, G-protein 97.3 0.026 8.9E-07 65.6 25.4 107 1347-1485 221-335 (338)
43 3u4t_A TPR repeat-containing p 97.3 0.038 1.3E-06 63.1 26.1 118 1349-1496 142-264 (272)
44 2qk2_A LP04448P; mini spindles 97.3 0.0027 9.3E-08 73.1 16.0 177 509-740 25-204 (242)
45 1xi4_A Clathrin heavy chain; a 97.3 0.27 9.4E-06 68.6 36.9 259 1040-1409 1049-1308(1630)
46 2jdq_A Importin alpha-1 subuni 97.3 0.095 3.3E-06 65.1 30.6 401 198-687 28-446 (450)
47 4eqf_A PEX5-related protein; a 97.2 0.017 5.8E-07 69.4 22.5 240 1043-1410 68-310 (365)
48 1fch_A Peroxisomal targeting s 97.2 0.033 1.1E-06 66.5 24.1 263 1044-1409 68-358 (368)
49 1wa5_B Importin alpha subunit; 97.1 0.073 2.5E-06 68.3 28.3 400 200-687 97-513 (530)
50 2ooe_A Cleavage stimulation fa 97.1 1.3 4.5E-05 56.4 40.2 134 1349-1541 230-388 (530)
51 2ho1_A Type 4 fimbrial biogene 97.1 0.046 1.6E-06 61.7 22.9 105 1349-1491 141-247 (252)
52 4b8j_A Importin subunit alpha- 97.0 0.11 3.7E-06 66.6 28.4 399 199-686 83-498 (528)
53 4g1t_A Interferon-induced prot 96.9 0.014 4.8E-07 72.7 18.6 318 1044-1409 55-400 (472)
54 1ibr_B P95, importin beta-1 su 96.8 0.27 9.2E-06 61.0 28.8 190 508-744 226-440 (462)
55 1ibr_B P95, importin beta-1 su 96.8 0.11 3.8E-06 64.6 25.0 147 151-309 39-202 (462)
56 2vq2_A PILW, putative fimbrial 96.8 0.13 4.3E-06 56.4 22.5 108 1349-1493 113-222 (225)
57 3sf4_A G-protein-signaling mod 96.7 0.035 1.2E-06 67.0 19.0 62 1348-1409 266-335 (406)
58 2x19_B Importin-13; nuclear tr 96.7 1.4 4.7E-05 60.8 36.9 388 200-628 459-907 (963)
59 4gco_A Protein STI-1; structur 96.7 0.019 6.6E-07 59.1 13.9 114 1344-1495 8-123 (126)
60 2jdq_A Importin alpha-1 subuni 96.6 0.13 4.4E-06 63.9 24.0 154 148-311 65-222 (450)
61 2h6f_A Protein farnesyltransfe 96.6 0.17 5.9E-06 62.5 24.8 59 1123-1181 106-165 (382)
62 4gyw_A UDP-N-acetylglucosamine 96.6 0.037 1.3E-06 74.2 19.2 152 1346-1558 6-159 (723)
63 3vtx_A MAMA; tetratricopeptide 96.6 0.1 3.5E-06 56.0 19.5 136 1347-1542 3-140 (184)
64 2ho1_A Type 4 fimbrial biogene 96.5 0.1 3.5E-06 58.8 20.0 152 1045-1209 42-201 (252)
65 3u4t_A TPR repeat-containing p 96.5 0.32 1.1E-05 55.2 24.3 152 1045-1209 8-168 (272)
66 3now_A UNC-45 protein, SD10334 96.5 1.2 4E-05 60.1 32.8 509 161-746 217-790 (810)
67 2q7f_A YRRB protein; TPR, prot 96.5 0.034 1.2E-06 62.0 15.5 189 1043-1252 26-220 (243)
68 4a1s_A PINS, partner of inscut 96.5 0.16 5.6E-06 61.7 22.8 64 1347-1410 301-372 (411)
69 2x1g_F Cadmus; transport prote 96.4 0.84 2.9E-05 63.1 32.1 392 202-627 476-918 (971)
70 3urz_A Uncharacterized protein 96.4 0.13 4.4E-06 57.3 19.3 112 1349-1498 4-133 (208)
71 1wa5_B Importin alpha subunit; 96.3 0.72 2.5E-05 59.0 28.8 148 151-312 91-246 (530)
72 4g1t_A Interferon-induced prot 96.3 0.66 2.3E-05 57.5 27.8 51 1123-1173 60-119 (472)
73 3tpo_A Importin subunit alpha- 96.3 0.47 1.6E-05 61.0 26.6 104 199-312 85-193 (529)
74 2vq2_A PILW, putative fimbrial 96.3 0.23 7.9E-06 54.2 20.5 152 1045-1209 13-173 (225)
75 2z6g_A B-catenin; FULL-length, 96.2 2.4 8.2E-05 57.2 34.2 150 150-311 153-306 (780)
76 3ro2_A PINS homolog, G-protein 96.2 0.08 2.7E-06 61.4 17.4 93 1045-1145 10-114 (338)
77 3uq3_A Heat shock protein STI1 96.2 0.11 3.9E-06 58.0 18.1 143 1045-1209 10-165 (258)
78 4b8j_A Importin subunit alpha- 96.2 0.29 9.8E-06 62.7 24.0 345 152-531 79-446 (528)
79 2pl2_A Hypothetical conserved 96.2 0.061 2.1E-06 60.4 15.5 151 1045-1209 10-177 (217)
80 2pl2_A Hypothetical conserved 96.2 0.11 3.6E-06 58.4 17.4 131 1349-1539 5-148 (217)
81 1xnf_A Lipoprotein NLPI; TPR, 96.1 0.081 2.8E-06 60.1 16.4 55 1349-1404 215-269 (275)
82 3vtx_A MAMA; tetratricopeptide 96.1 0.074 2.5E-06 57.2 15.2 135 1348-1542 38-174 (184)
83 3ibv_A Exportin-T; karyopherin 96.1 0.65 2.2E-05 64.3 28.1 376 167-571 332-772 (980)
84 2vyi_A SGTA protein; chaperone 96.1 0.09 3.1E-06 52.0 14.7 116 1346-1499 9-126 (131)
85 1xnf_A Lipoprotein NLPI; TPR, 96.1 0.21 7.2E-06 56.6 19.7 93 1360-1486 155-248 (275)
86 2z6g_A B-catenin; FULL-length, 96.1 6.5 0.00022 53.0 37.2 149 148-312 116-265 (780)
87 4i17_A Hypothetical protein; T 96.0 0.23 7.7E-06 55.4 19.1 120 1350-1500 43-166 (228)
88 1elw_A TPR1-domain of HOP; HOP 96.0 0.084 2.9E-06 51.2 13.7 112 1348-1497 3-116 (118)
89 2lni_A Stress-induced-phosphop 96.0 0.12 4.2E-06 51.4 15.1 115 1346-1498 13-129 (133)
90 3ul1_B Importin subunit alpha- 95.9 2 6.7E-05 55.0 29.7 108 194-312 62-174 (510)
91 4ga2_A E3 SUMO-protein ligase 95.9 0.013 4.3E-07 62.2 7.6 105 1356-1498 4-110 (150)
92 3as5_A MAMA; tetratricopeptide 95.8 0.11 3.8E-06 54.7 14.7 151 1045-1208 13-169 (186)
93 2z6h_A Catenin beta-1, beta-ca 95.8 8.1 0.00028 50.7 38.4 149 150-311 17-170 (644)
94 4gyw_A UDP-N-acetylglucosamine 95.7 0.1 3.5E-06 69.9 17.2 150 1045-1207 14-169 (723)
95 3mkr_A Coatomer subunit epsilo 95.7 0.064 2.2E-06 63.4 13.7 147 1044-1208 105-260 (291)
96 1xi4_A Clathrin heavy chain; a 95.7 8.3 0.00028 54.5 35.3 331 1047-1498 992-1325(1630)
97 1na0_A Designed protein CTPR3; 95.7 0.19 6.6E-06 49.0 15.0 111 1349-1497 9-121 (125)
98 3sz7_A HSC70 cochaperone (SGT) 95.6 0.09 3.1E-06 55.8 13.2 113 1345-1495 7-121 (164)
99 3upv_A Heat shock protein STI1 95.6 0.16 5.5E-06 51.1 14.2 111 1348-1496 3-121 (126)
100 2dba_A Smooth muscle cell asso 95.5 0.19 6.5E-06 51.2 14.7 113 1346-1496 25-142 (148)
101 2qk2_A LP04448P; mini spindles 95.5 0.23 8E-06 56.8 16.7 153 144-313 53-208 (242)
102 3mkr_A Coatomer subunit epsilo 95.4 3.4 0.00011 48.6 26.9 110 1350-1497 131-244 (291)
103 3m1i_C Exportin-1; heat repeat 95.3 16 0.00056 50.8 39.7 101 202-314 465-573 (1049)
104 2vgl_A Adaptor protein complex 95.2 12 0.00041 49.1 38.4 130 161-313 87-219 (621)
105 4i17_A Hypothetical protein; T 95.2 0.45 1.6E-05 52.9 17.7 140 1349-1541 7-149 (228)
106 3qky_A Outer membrane assembly 95.2 0.43 1.5E-05 54.5 17.8 112 1346-1490 12-134 (261)
107 1w63_A Adapter-related protein 95.2 4.5 0.00015 53.0 29.7 105 192-310 144-263 (618)
108 2z6h_A Catenin beta-1, beta-ca 95.2 6.5 0.00022 51.6 31.4 105 197-312 21-129 (644)
109 2fbn_A 70 kDa peptidylprolyl i 95.1 0.36 1.2E-05 52.8 15.9 116 1347-1500 36-169 (198)
110 4ga2_A E3 SUMO-protein ligase 95.0 0.13 4.4E-06 54.3 11.8 114 1346-1497 28-144 (150)
111 2qk1_A Protein STU2; STU2P, XM 95.0 0.38 1.3E-05 55.9 16.6 183 509-740 26-219 (249)
112 1elr_A TPR2A-domain of HOP; HO 94.9 0.41 1.4E-05 47.1 14.7 121 1347-1499 2-124 (131)
113 2vsy_A XCC0866; transferase, g 94.8 0.26 8.9E-06 63.6 16.1 139 1347-1542 21-161 (568)
114 2h6f_A Protein farnesyltransfe 94.7 0.23 7.9E-06 61.3 14.6 140 1343-1542 91-233 (382)
115 1p5q_A FKBP52, FK506-binding p 94.7 0.28 9.4E-06 59.3 15.0 117 1346-1500 144-277 (336)
116 2vgl_B AP-2 complex subunit be 94.7 15 0.00053 47.6 36.1 63 241-308 51-113 (591)
117 4abn_A Tetratricopeptide repea 94.7 0.35 1.2E-05 61.3 16.5 143 1347-1540 100-252 (474)
118 4gco_A Protein STI-1; structur 94.7 0.1 3.4E-06 53.6 9.4 88 1120-1208 19-106 (126)
119 1ouv_A Conserved hypothetical 94.6 5.1 0.00017 45.6 25.0 100 1349-1486 146-255 (273)
120 3q49_B STIP1 homology and U bo 94.6 0.53 1.8E-05 47.5 14.8 111 1347-1495 7-124 (137)
121 1a17_A Serine/threonine protei 94.6 0.43 1.5E-05 49.6 14.4 112 1347-1496 11-124 (166)
122 2ond_A Cleavage stimulation fa 94.5 1.5 5.2E-05 51.5 20.6 111 1348-1495 49-176 (308)
123 1hh8_A P67PHOX, NCF-2, neutrop 94.4 0.73 2.5E-05 50.3 16.3 132 1350-1542 7-154 (213)
124 1b89_A Protein (clathrin heavy 94.3 0.91 3.1E-05 56.9 18.6 58 1350-1409 178-235 (449)
125 1hxi_A PEX5, peroxisome target 94.3 0.37 1.3E-05 48.9 12.8 100 1383-1542 19-118 (121)
126 2fo7_A Synthetic consensus TPR 94.3 0.47 1.6E-05 46.6 13.3 25 1045-1069 6-30 (136)
127 2xev_A YBGF; tetratricopeptide 94.3 0.57 1.9E-05 46.7 13.9 108 1350-1492 3-115 (129)
128 1wa5_C Importin alpha RE-expor 94.3 3.8 0.00013 56.6 26.7 142 162-312 375-527 (960)
129 2fo7_A Synthetic consensus TPR 94.2 0.52 1.8E-05 46.3 13.3 110 1350-1497 2-113 (136)
130 3nf1_A KLC 1, kinesin light ch 94.1 1.3 4.5E-05 50.7 18.6 18 1236-1253 164-181 (311)
131 4gcn_A Protein STI-1; structur 94.0 0.45 1.5E-05 48.6 12.8 109 1346-1485 5-115 (127)
132 4abn_A Tetratricopeptide repea 94.0 0.35 1.2E-05 61.2 14.4 153 1044-1209 106-284 (474)
133 1qqe_A Vesicular transport pro 94.0 0.8 2.7E-05 53.7 16.5 157 1047-1209 44-225 (292)
134 2pzi_A Probable serine/threoni 93.9 0.39 1.3E-05 63.8 15.3 157 1045-1210 396-561 (681)
135 2vyi_A SGTA protein; chaperone 93.8 0.61 2.1E-05 45.7 13.1 107 1045-1163 17-129 (131)
136 3upv_A Heat shock protein STI1 93.8 0.2 7E-06 50.3 9.6 88 1119-1207 9-96 (126)
137 3as5_A MAMA; tetratricopeptide 93.8 0.84 2.9E-05 47.7 14.9 113 1348-1498 41-155 (186)
138 2pzi_A Probable serine/threoni 93.8 0.18 6.1E-06 67.1 11.6 137 1346-1543 430-568 (681)
139 4hat_C Exportin-1; heat repeat 93.7 33 0.0011 47.6 37.9 105 202-314 465-573 (1023)
140 1elr_A TPR2A-domain of HOP; HO 93.5 0.33 1.1E-05 47.9 10.4 89 1121-1209 11-105 (131)
141 1ihg_A Cyclophilin 40; ppiase 93.5 0.52 1.8E-05 57.9 14.3 116 1347-1500 221-354 (370)
142 3sz7_A HSC70 cochaperone (SGT) 93.4 0.33 1.1E-05 51.3 10.9 87 1121-1208 18-104 (164)
143 2xcb_A PCRH, regulatory protei 93.4 0.84 2.9E-05 47.1 13.7 107 1344-1488 13-121 (142)
144 1kt0_A FKBP51, 51 kDa FK506-bi 93.4 0.46 1.6E-05 60.0 13.9 117 1347-1501 266-399 (457)
145 2yhc_A BAMD, UPF0169 lipoprote 93.3 1.4 4.8E-05 49.3 16.5 170 1349-1559 4-199 (225)
146 3gyz_A Chaperone protein IPGC; 93.3 0.2 7E-06 53.4 8.9 85 1122-1207 44-128 (151)
147 3qky_A Outer membrane assembly 93.3 0.65 2.2E-05 53.0 13.9 162 1348-1542 51-228 (261)
148 1a17_A Serine/threonine protei 93.2 0.55 1.9E-05 48.7 12.0 88 1120-1208 19-106 (166)
149 1hz4_A MALT regulatory protein 93.2 14 0.00046 44.1 26.0 59 1351-1409 255-321 (373)
150 3qou_A Protein YBBN; thioredox 93.1 0.53 1.8E-05 55.2 13.0 146 1349-1500 117-268 (287)
151 3gyz_A Chaperone protein IPGC; 93.1 0.74 2.5E-05 49.0 12.9 107 1343-1487 30-138 (151)
152 4db8_A Armadillo-repeat protei 93.0 1.1 3.7E-05 50.9 15.1 148 152-311 17-168 (252)
153 2yhc_A BAMD, UPF0169 lipoprote 92.9 0.99 3.4E-05 50.5 14.4 157 1045-1210 9-211 (225)
154 2ond_A Cleavage stimulation fa 92.9 1.9 6.5E-05 50.7 17.5 132 1348-1538 98-232 (308)
155 1hxi_A PEX5, peroxisome target 92.8 0.48 1.7E-05 48.0 10.6 100 1350-1487 18-119 (121)
156 4hxt_A De novo protein OR329; 92.8 0.87 3E-05 51.4 13.9 151 150-311 47-200 (252)
157 1elw_A TPR1-domain of HOP; HOP 92.8 0.37 1.3E-05 46.5 9.3 89 1120-1209 10-98 (118)
158 1ouv_A Conserved hypothetical 92.8 1.9 6.7E-05 49.1 16.9 137 1348-1542 5-147 (273)
159 2vgx_A Chaperone SYCD; alterna 92.8 1.2 4E-05 46.8 13.8 105 1344-1486 16-122 (148)
160 2vgl_A Adaptor protein complex 92.8 18 0.00062 47.4 28.1 91 161-270 124-216 (621)
161 2lni_A Stress-induced-phosphop 92.7 0.58 2E-05 46.4 10.8 90 1045-1174 21-110 (133)
162 3rkv_A Putative peptidylprolyl 92.6 1.3 4.3E-05 46.7 13.8 116 1347-1500 9-145 (162)
163 4gcn_A Protein STI-1; structur 92.6 0.32 1.1E-05 49.7 8.9 59 1121-1179 15-73 (127)
164 3edt_B KLC 2, kinesin light ch 92.5 2.3 7.8E-05 47.8 16.9 82 1126-1208 13-110 (283)
165 3qou_A Protein YBBN; thioredox 92.5 0.93 3.2E-05 53.1 14.0 146 1045-1202 122-274 (287)
166 2xcb_A PCRH, regulatory protei 92.4 0.38 1.3E-05 49.8 9.3 86 1121-1207 25-110 (142)
167 2hr2_A Hypothetical protein; a 92.4 0.35 1.2E-05 52.4 9.0 86 1119-1205 16-124 (159)
168 2xev_A YBGF; tetratricopeptide 92.3 0.45 1.6E-05 47.4 9.5 90 1119-1208 7-101 (129)
169 1hh8_A P67PHOX, NCF-2, neutrop 92.3 2 6.8E-05 46.8 15.5 134 1045-1193 11-166 (213)
170 3q49_B STIP1 homology and U bo 92.2 0.45 1.6E-05 48.0 9.4 86 1121-1207 16-101 (137)
171 3ul1_B Importin subunit alpha- 92.1 11 0.00037 48.1 24.3 152 149-312 102-263 (510)
172 2r5s_A Uncharacterized protein 92.0 0.76 2.6E-05 49.3 11.4 46 1451-1498 108-155 (176)
173 3tpo_A Importin subunit alpha- 91.9 10 0.00036 48.4 23.9 153 148-312 120-282 (529)
174 2vsy_A XCC0866; transferase, g 91.9 1.6 5.4E-05 56.3 16.3 166 1362-1597 2-169 (568)
175 4hxt_A De novo protein OR329; 91.9 2.9 9.8E-05 47.0 16.7 148 152-311 7-158 (252)
176 2qk1_A Protein STU2; STU2P, XM 91.8 2.3 7.9E-05 49.2 16.0 161 143-314 56-224 (249)
177 4db8_A Armadillo-repeat protei 91.8 0.95 3.2E-05 51.4 12.5 150 150-311 57-210 (252)
178 1jdh_A Beta-catenin; beta-cate 91.7 34 0.0012 42.9 31.4 149 150-311 20-173 (529)
179 3nf1_A KLC 1, kinesin light ch 91.7 0.81 2.8E-05 52.6 11.9 128 1044-1175 73-222 (311)
180 1w63_A Adapter-related protein 91.6 0.53 1.8E-05 61.9 11.5 246 12-311 115-380 (618)
181 2kck_A TPR repeat; tetratricop 91.6 0.6 2.1E-05 44.6 9.1 88 1121-1209 13-103 (112)
182 4db6_A Armadillo repeat protei 91.4 2.3 7.8E-05 46.8 14.8 152 149-312 14-169 (210)
183 2hr2_A Hypothetical protein; a 91.4 1.2 4.3E-05 48.1 12.0 108 1347-1485 9-134 (159)
184 4e6h_A MRNA 3'-END-processing 91.3 49 0.0017 43.8 31.6 131 1348-1494 342-476 (679)
185 2kck_A TPR repeat; tetratricop 91.3 0.67 2.3E-05 44.2 9.1 102 1348-1485 5-109 (112)
186 3e4b_A ALGK; tetratricopeptide 91.1 33 0.0011 42.8 26.8 119 1363-1542 231-355 (452)
187 2dba_A Smooth muscle cell asso 91.1 0.67 2.3E-05 47.0 9.3 86 1121-1207 35-123 (148)
188 2r5s_A Uncharacterized protein 91.1 1.7 5.8E-05 46.5 12.9 147 1045-1203 11-164 (176)
189 2ooe_A Cleavage stimulation fa 91.1 40 0.0014 42.5 38.3 170 1451-1663 272-456 (530)
190 1na0_A Designed protein CTPR3; 91.0 1.9 6.4E-05 41.7 12.2 93 1045-1149 14-112 (125)
191 2vgx_A Chaperone SYCD; alterna 90.9 0.67 2.3E-05 48.7 9.3 85 1122-1207 29-113 (148)
192 1oyz_A Hypothetical protein YI 90.9 3 0.0001 48.3 15.8 57 7-70 26-82 (280)
193 3urz_A Uncharacterized protein 90.8 3 0.0001 46.0 15.1 67 1120-1186 60-126 (208)
194 1qqe_A Vesicular transport pro 90.7 5.5 0.00019 46.4 17.9 141 1348-1542 36-191 (292)
195 3rkv_A Putative peptidylprolyl 90.6 0.48 1.6E-05 50.0 7.9 90 1118-1208 15-122 (162)
196 2e2e_A Formate-dependent nitri 90.6 2.5 8.6E-05 44.8 13.7 104 1348-1489 43-151 (177)
197 4db6_A Armadillo repeat protei 90.6 1.3 4.4E-05 48.8 11.7 147 150-310 57-209 (210)
198 3edt_B KLC 2, kinesin light ch 90.4 2.4 8.3E-05 47.5 14.2 123 1347-1499 41-181 (283)
199 3gjx_A Exportin-1; transport, 90.2 76 0.0026 44.2 38.2 138 167-315 454-600 (1073)
200 2l6j_A TPR repeat-containing p 90.1 0.72 2.5E-05 44.5 8.1 60 1121-1180 11-70 (111)
201 1p5q_A FKBP52, FK506-binding p 89.6 2 7E-05 51.6 13.2 123 1045-1167 152-283 (336)
202 2c2l_A CHIP, carboxy terminus 89.1 1.1 3.7E-05 52.4 10.1 87 1120-1207 10-96 (281)
203 3ulq_A Response regulator aspa 89.0 28 0.00095 41.7 22.9 121 1346-1498 140-275 (383)
204 3ulq_A Response regulator aspa 89.0 7.4 0.00025 46.8 17.8 113 1354-1497 108-234 (383)
205 2ifu_A Gamma-SNAP; membrane fu 88.9 3.9 0.00013 48.1 14.7 156 1047-1209 43-221 (307)
206 2kc7_A BFR218_protein; tetratr 88.8 1.1 3.8E-05 42.6 8.2 63 1119-1181 5-68 (99)
207 3ro3_A PINS homolog, G-protein 88.7 3.9 0.00013 41.2 12.9 119 1347-1497 7-139 (164)
208 3rjv_A Putative SEL1 repeat pr 88.1 5.1 0.00017 44.4 14.3 137 1349-1542 18-163 (212)
209 1na3_A Designed protein CTPR2; 88.1 1.2 4.2E-05 41.1 7.8 58 1122-1179 17-74 (91)
210 2if4_A ATFKBP42; FKBP-like, al 88.0 0.94 3.2E-05 54.6 8.7 114 1347-1498 177-309 (338)
211 1hz4_A MALT regulatory protein 87.9 50 0.0017 39.1 28.2 98 1356-1485 222-325 (373)
212 2xm6_A Protein corresponding t 87.9 63 0.0021 40.2 32.3 136 1349-1542 255-400 (490)
213 1wao_1 Serine/threonine protei 87.5 0.83 2.9E-05 58.0 8.2 110 1349-1496 6-117 (477)
214 3ma5_A Tetratricopeptide repea 87.3 1.3 4.5E-05 42.9 7.8 52 1122-1173 15-66 (100)
215 1na3_A Designed protein CTPR2; 87.3 3.5 0.00012 37.9 10.5 77 1383-1497 11-87 (91)
216 2l6j_A TPR repeat-containing p 87.1 2.7 9.3E-05 40.3 10.0 45 1453-1499 40-90 (111)
217 2qfc_A PLCR protein; TPR, HTH, 86.9 27 0.00092 40.3 20.3 118 1349-1498 75-207 (293)
218 1kt0_A FKBP51, 51 kDa FK506-bi 86.8 2 6.7E-05 54.1 11.0 89 1120-1209 274-377 (457)
219 2c2l_A CHIP, carboxy terminus 86.7 3.7 0.00013 47.9 12.6 100 1349-1486 4-105 (281)
220 3rjv_A Putative SEL1 repeat pr 86.6 4.2 0.00014 45.1 12.5 147 1349-1547 50-206 (212)
221 2fbn_A 70 kDa peptidylprolyl i 86.4 2.9 9.9E-05 45.4 10.9 88 1120-1208 44-147 (198)
222 3k9i_A BH0479 protein; putativ 86.2 0.41 1.4E-05 47.8 3.4 78 1127-1205 3-83 (117)
223 3q15_A PSP28, response regulat 85.9 4.7 0.00016 48.6 13.4 157 1045-1208 106-286 (378)
224 1wao_1 Serine/threonine protei 85.7 1.2 4.1E-05 56.5 8.3 87 1122-1209 14-100 (477)
225 2e2e_A Formate-dependent nitri 85.6 1.5 5.2E-05 46.5 7.9 48 1126-1173 22-69 (177)
226 1zu2_A Mitochondrial import re 85.5 2.4 8.3E-05 45.7 9.2 81 1451-1542 36-124 (158)
227 3k9i_A BH0479 protein; putativ 85.1 1.1 3.9E-05 44.4 6.1 58 1122-1179 35-92 (117)
228 3ltm_A Alpha-REP4; protein eng 85.0 6.3 0.00022 43.4 12.8 58 148-217 51-108 (211)
229 1oyz_A Hypothetical protein YI 84.8 47 0.0016 38.0 20.8 128 152-308 28-155 (280)
230 3mv2_B Coatomer subunit epsilo 84.2 7.6 0.00026 46.4 13.6 153 1044-1209 104-279 (310)
231 3now_A UNC-45 protein, SD10334 83.9 45 0.0015 45.0 22.3 347 150-528 333-737 (810)
232 2kat_A Uncharacterized protein 83.9 2.3 7.9E-05 41.7 7.8 54 1123-1176 28-81 (115)
233 2xm6_A Protein corresponding t 83.4 98 0.0034 38.4 38.9 114 1349-1500 328-453 (490)
234 1ihg_A Cyclophilin 40; ppiase 82.8 2.6 8.8E-05 51.6 9.2 88 1120-1208 229-332 (370)
235 4ady_A RPN2, 26S proteasome re 82.8 5.5 0.00019 54.2 12.8 202 6-270 474-676 (963)
236 1xqr_A HSPBP1 protein; armadil 82.3 10 0.00036 44.9 13.8 139 162-311 54-197 (296)
237 3ltj_A Alpharep-4; protein eng 82.3 15 0.00053 39.9 14.5 63 143-217 10-72 (201)
238 2ifu_A Gamma-SNAP; membrane fu 82.3 12 0.00041 43.9 14.4 107 1347-1486 74-188 (307)
239 1jdh_A Beta-catenin; beta-cate 82.2 1.1E+02 0.0038 38.1 37.8 107 197-312 24-132 (529)
240 3gw4_A Uncharacterized protein 82.1 12 0.0004 39.9 13.2 86 1122-1207 74-171 (203)
241 3a6p_A Exportin-5; exportin-5, 82.0 1.9E+02 0.0066 40.8 35.8 45 291-338 57-101 (1204)
242 3mv2_B Coatomer subunit epsilo 81.8 10 0.00036 45.3 13.5 137 1059-1209 85-237 (310)
243 2kc7_A BFR218_protein; tetratr 81.4 7.8 0.00027 36.5 10.3 70 1385-1492 4-74 (99)
244 4e6h_A MRNA 3'-END-processing 81.4 6.8 0.00023 52.0 12.9 111 1348-1496 433-550 (679)
245 3ltj_A Alpharep-4; protein eng 80.6 12 0.00042 40.7 12.9 56 150-217 48-103 (201)
246 3ro3_A PINS homolog, G-protein 79.7 10 0.00035 38.0 11.1 104 1349-1484 49-160 (164)
247 1xqr_A HSPBP1 protein; armadil 79.0 21 0.00072 42.3 14.9 148 151-311 85-239 (296)
248 3gjx_A Exportin-1; transport, 78.5 1.2E+02 0.0041 42.3 24.1 284 292-594 72-428 (1073)
249 2if4_A ATFKBP42; FKBP-like, al 78.3 2.6 9E-05 50.7 7.0 89 1120-1209 185-290 (338)
250 3ma5_A Tetratricopeptide repea 78.3 5.8 0.0002 38.2 8.3 63 1347-1409 5-69 (100)
251 2kat_A Uncharacterized protein 78.2 11 0.00038 36.6 10.5 95 1368-1500 4-102 (115)
252 3ltm_A Alpha-REP4; protein eng 77.5 24 0.00082 38.7 14.1 60 147-218 19-78 (211)
253 3gw4_A Uncharacterized protein 77.5 9.4 0.00032 40.7 10.5 107 1347-1485 64-179 (203)
254 3q15_A PSP28, response regulat 75.6 47 0.0016 39.7 17.2 121 1346-1498 138-272 (378)
255 2qfc_A PLCR protein; TPR, HTH, 73.8 38 0.0013 39.0 15.1 115 1353-1498 119-247 (293)
256 3u3w_A Transcriptional activat 73.6 28 0.00096 40.1 14.0 113 1355-1498 121-247 (293)
257 4f3v_A ESX-1 secretion system 73.2 17 0.00058 42.9 11.8 124 1123-1252 111-235 (282)
258 3grl_A General vesicular trans 72.9 2.4E+02 0.008 36.9 23.7 241 283-567 124-394 (651)
259 3a6p_A Exportin-5; exportin-5, 72.3 3.3E+02 0.011 38.4 29.4 103 519-622 506-620 (1204)
260 1b89_A Protein (clathrin heavy 72.3 2 6.9E-05 53.8 3.8 134 1044-1204 65-198 (449)
261 1xm9_A Plakophilin 1; armadill 65.7 2.6E+02 0.0089 34.7 25.1 144 152-311 7-173 (457)
262 1te4_A Conserved protein MTH18 65.0 20 0.00067 36.6 8.9 112 152-305 17-128 (131)
263 4g26_A Pentatricopeptide repea 64.5 67 0.0023 40.8 15.6 153 1048-1212 34-204 (501)
264 3u3w_A Transcriptional activat 63.3 33 0.0011 39.5 11.6 154 1047-1206 82-260 (293)
265 2of3_A ZYG-9; multifunctional 63.1 60 0.002 37.9 13.4 72 1588-1659 123-196 (266)
266 2v5f_A Prolyl 4-hydroxylase su 62.5 41 0.0014 32.7 10.4 88 1382-1501 6-93 (104)
267 4h7y_A Dual specificity protei 62.3 22 0.00077 38.0 8.6 48 1446-1496 56-103 (161)
268 4ffb_C Protein STU2; tubulin f 60.7 83 0.0028 36.3 14.4 152 145-312 53-214 (278)
269 1klx_A Cysteine rich protein B 59.9 65 0.0022 32.9 11.9 119 1365-1543 11-131 (138)
270 3b2a_A TON_1937, putative unch 59.6 1.9E+02 0.0064 33.3 15.8 140 150-312 36-181 (265)
271 4g26_A Pentatricopeptide repea 59.0 38 0.0013 43.1 11.9 159 1087-1255 27-205 (501)
272 1zu2_A Mitochondrial import re 58.4 7.5 0.00026 41.9 4.4 43 1123-1165 11-53 (158)
273 3e4b_A ALGK; tetratricopeptide 56.2 76 0.0026 39.4 13.9 60 1350-1409 142-207 (452)
274 3ibv_A Exportin-T; karyopherin 56.0 5.6E+02 0.019 35.3 30.6 64 252-315 506-571 (980)
275 3n71_A Histone lysine methyltr 55.8 21 0.0007 45.5 8.6 90 1049-1142 318-421 (490)
276 2iw3_A Elongation factor 3A; a 55.6 5.6E+02 0.019 35.2 28.0 304 204-551 28-356 (986)
277 1wa5_C Importin alpha RE-expor 53.4 5.8E+02 0.02 34.7 43.8 128 440-569 541-672 (960)
278 3mkq_A Coatomer beta'-subunit; 52.8 46 0.0016 44.0 11.7 90 1044-1173 685-774 (814)
279 2v5f_A Prolyl 4-hydroxylase su 52.6 25 0.00085 34.3 6.9 58 1123-1180 14-78 (104)
280 4b4t_Q 26S proteasome regulato 51.8 2.8E+02 0.0097 33.0 17.8 105 1347-1482 133-245 (434)
281 3dra_A Protein farnesyltransfe 50.9 3.7E+02 0.013 31.7 18.5 225 1129-1409 48-286 (306)
282 3qww_A SET and MYND domain-con 48.2 31 0.0011 43.1 8.3 91 1048-1142 306-410 (433)
283 3b2a_A TON_1937, putative unch 44.5 13 0.00044 42.5 3.5 60 507-568 41-105 (265)
284 3n71_A Histone lysine methyltr 44.4 83 0.0028 39.9 11.5 79 1329-1409 333-421 (490)
285 3nmw_A APC variant protein; AR 44.1 4.5E+02 0.015 31.6 17.5 139 161-311 97-248 (354)
286 2of3_A ZYG-9; multifunctional 43.7 3.5E+02 0.012 31.4 15.6 139 198-371 54-201 (266)
287 4f3v_A ESX-1 secretion system 43.6 1.9E+02 0.0065 33.9 13.6 105 1353-1493 139-247 (282)
288 1juq_A ADP-ribosylation factor 42.0 1.7E+02 0.0057 31.8 11.8 65 631-697 28-92 (171)
289 1x5b_A Signal transducing adap 41.4 1.7E+02 0.0059 31.4 11.8 70 626-697 25-94 (163)
290 1lrv_A LRV, leucine-rich repea 39.3 26 0.00088 40.4 5.1 46 7-66 53-98 (244)
291 3qwp_A SET and MYND domain-con 37.9 1.3E+02 0.0044 37.3 11.7 53 1120-1172 293-353 (429)
292 4b4t_Q 26S proteasome regulato 37.4 5.8E+02 0.02 30.1 26.6 162 1047-1209 11-201 (434)
293 3g2s_A C-terminal fragment of 37.2 1.6E+02 0.0054 31.3 10.4 64 632-697 27-90 (149)
294 1klx_A Cysteine rich protein B 36.8 1.8E+02 0.0063 29.4 10.8 101 1355-1495 31-137 (138)
295 4ffb_C Protein STU2; tubulin f 36.7 3.7E+02 0.013 30.6 14.8 138 163-312 24-170 (278)
296 1xm9_A Plakophilin 1; armadill 36.4 92 0.0032 38.8 10.1 151 151-312 287-451 (457)
297 3bee_A Putative YFRE protein; 36.1 93 0.0032 29.9 7.9 68 1380-1485 5-75 (93)
298 1te4_A Conserved protein MTH18 35.2 9.8 0.00034 38.9 0.7 84 195-308 17-100 (131)
299 2iw3_A Elongation factor 3A; a 34.3 2E+02 0.0067 39.7 13.2 212 383-625 72-292 (986)
300 3nmz_A APC variant protein; pr 33.8 7.9E+02 0.027 30.6 19.5 138 162-311 214-364 (458)
301 3qwp_A SET and MYND domain-con 33.5 70 0.0024 39.8 8.2 89 1050-1142 297-399 (429)
302 1dce_A Protein (RAB geranylger 32.4 2.7E+02 0.0093 35.7 13.7 78 1130-1208 89-169 (567)
303 3qww_A SET and MYND domain-con 31.8 93 0.0032 38.8 8.9 80 1329-1410 322-411 (433)
304 1upk_A MO25 protein; transfera 31.4 3.9E+02 0.013 32.1 13.5 93 472-568 182-284 (341)
305 1mhq_A ADP-ribosylation factor 30.6 2.1E+02 0.0073 30.2 10.1 64 632-697 17-80 (148)
306 3l6x_A Catenin delta-1; cateni 29.8 5.1E+02 0.017 33.5 15.5 149 150-309 311-475 (584)
307 2uy1_A Cleavage stimulation fa 29.8 2.5E+02 0.0086 35.3 12.6 62 1348-1410 285-349 (493)
308 3u0r_A Apoptosis inhibitor 5; 29.3 9.6E+02 0.033 30.2 19.3 248 144-414 58-318 (507)
309 3tjz_B Coatomer subunit gamma; 28.3 2.8E+02 0.0097 33.5 12.0 118 204-350 42-159 (355)
310 1dce_A Protein (RAB geranylger 28.0 4.3E+02 0.015 33.8 14.5 133 1365-1542 89-225 (567)
311 1elk_A Target of MYB1; superhe 26.9 3.6E+02 0.012 28.6 11.2 64 632-697 32-96 (157)
312 3ldz_A STAM-1, signal transduc 26.8 3.6E+02 0.012 28.0 11.0 71 625-697 14-84 (140)
313 1dvp_A HRS, hepatocyte growth 26.1 2.8E+02 0.0097 31.0 10.8 64 632-697 21-84 (220)
314 3qd2_B Eukaryotic translation 25.7 65 0.0022 37.5 5.7 63 1894-1959 147-213 (332)
315 3ly7_A Transcriptional activat 24.4 2.8E+02 0.0095 33.8 10.9 68 1381-1487 277-344 (372)
316 3nmw_A APC variant protein; AR 24.1 5.6E+02 0.019 30.7 13.6 148 150-310 130-292 (354)
317 4ady_A RPN2, 26S proteasome re 24.0 2.6E+02 0.0088 38.3 11.4 158 17-270 450-607 (963)
318 1upk_A MO25 protein; transfera 23.8 1E+03 0.034 28.6 18.0 167 490-694 73-250 (341)
319 3nmz_A APC variant protein; pr 23.4 2.6E+02 0.0088 35.1 10.7 71 241-312 380-452 (458)
320 3dra_A Protein farnesyltransfe 22.7 9.6E+02 0.033 28.0 18.1 86 1122-1208 152-246 (306)
321 1zth_A RIO1 serine protein kin 21.9 38 0.0013 38.8 2.5 25 1932-1959 194-218 (258)
322 1zar_A RIO2 kinase; serine kin 21.5 41 0.0014 39.2 2.8 26 1932-1959 216-241 (282)
323 2ijr_A Hypothetical protein AP 21.3 44 0.0015 38.7 2.7 26 843-868 111-136 (300)
324 3zyq_A Hepatocyte growth facto 20.9 3.7E+02 0.013 30.3 10.4 64 632-697 24-87 (226)
325 3pls_A Macrophage-stimulating 20.9 1.7E+02 0.0058 33.3 7.9 26 1932-1958 147-172 (298)
326 3bee_A Putative YFRE protein; 20.9 2.6E+02 0.0091 26.6 8.0 64 1348-1411 5-73 (93)
327 2clq_A Mitogen-activated prote 20.6 1.2E+02 0.004 34.7 6.4 28 1931-1958 144-171 (295)
328 3mkq_A Coatomer beta'-subunit; 20.6 7.7E+02 0.026 32.0 15.3 73 1124-1210 691-763 (814)
329 1p4o_A Insulin-like growth fac 20.3 8.7E+02 0.03 27.6 14.1 27 1931-1958 160-186 (322)
No 1
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=100.00 E-value=6.2e-50 Score=508.09 Aligned_cols=415 Identities=18% Similarity=0.257 Sum_probs=291.9
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCcccccc---CCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHH
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRA---GSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLV 1603 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLi 1603 (2037)
.|+.-|++|+.+....-..-...+|.-|-.......-+ +.-.+ ..|.+.--+.+..++..-.+.++||||
T Consensus 63 ~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALELL~~~f~d-------~~VR~yAV~~L~~~~D~eL~lYLlQLV 135 (614)
T 3ls8_A 63 KALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTN-------PTVRRYAVARLRQADDEDLLMYLLQLV 135 (614)
T ss_dssp GGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGGGSTTCCC-------HHHHHHHHHHHTTSCHHHHHHTHHHHH
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHhCcccCCC-------HHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 47888999999887654333458999995443210000 00011 234555556788999999999999999
Q ss_pred hhccCCChHH--------------------------------------------------------------HHHHHHHH
Q 000149 1604 SRICHQNEEI--------------------------------------------------------------VRLVKHII 1621 (2037)
Q Consensus 1604 SRI~h~~~~v--------------------------------------------------------------~~~l~~Ii 1621 (2037)
..+.+.+-.- ..+..-+|
T Consensus 136 QALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi 215 (614)
T 3ls8_A 136 QALKYENFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLI 215 (614)
T ss_dssp HHGGGSCHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHH
T ss_pred HhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHH
Confidence 9998764321 12444555
Q ss_pred HHHHHhcc---hhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHHHHHHhcc
Q 000149 1622 TSVLRQYP---QQGLWIMAAVSKSTI-----PSRREAAAEIIQAAKKGSAHGNS----ANNLFGQFTSLIDHLIKLCFHA 1689 (2037)
Q Consensus 1622 ~~v~~~yP---qq~lw~l~~~~kS~~-----~~R~~~a~~Il~~~k~~~~~~~~----~~~li~~~~~l~~~Li~l~~~~ 1689 (2037)
.|.. ..| +..+|++.+.+.... +.-.++...+++.+......+.. ....+..-..+.+.|.+++..-
T Consensus 216 ~RAl-~n~~ig~~lyW~L~~E~~~~~~~~~~~~~~~~Y~~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v 294 (614)
T 3ls8_A 216 SRAC-KNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAV 294 (614)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHhheeeeccCccccccchHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 445 456899988764321 11123344444443321111111 1122322235666666665321
Q ss_pred CCc-cccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeecc-ceEEecCCCcee
Q 000149 1690 GQS-KSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPK 1767 (2037)
Q Consensus 1690 ~~~-~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~-~v~V~~S~~~Pr 1767 (2037)
... ..+. +.-..++.+.... ....++.. ..-++|..+.++|.+|.+ .+.|++|+++||
T Consensus 295 ~~~~~~~~----kk~e~L~~~L~~~--------~~~~l~~~--------~~~~lPl~P~v~I~~i~p~~~~V~~Sk~~P~ 354 (614)
T 3ls8_A 295 QRESGNRK----KKNERLQALLGDN--------EKMNLSDV--------ELIPLPLEPQVKIRGIIPETATLFKSALMPA 354 (614)
T ss_dssp HHSCSCHH----HHHHHHHHHHHCH--------HHHCCSSC--------SSEEETTEEEEEEEEECGGGCEECSSTTCCE
T ss_pred HhhccchH----HHHHHHHHHHhch--------hhcccccC--------CCCCCCCCCceEEEEEecCeeEEeecccCeE
Confidence 100 0000 0011122221100 00111110 112345567799999985 789999999999
Q ss_pred EEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHH
Q 000149 1768 KIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNIL 1847 (2037)
Q Consensus 1768 ki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~ 1847 (2037)
+|+|+|+||+.|+||+|++||||||+|+||++++||++|+++. ++|++++|+|||+++++||||||++ .|+++|+
T Consensus 355 ~l~~~gsDG~~y~~i~K~gDDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il 429 (614)
T 3ls8_A 355 QLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVL 429 (614)
T ss_dssp EEEEEETTSCEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHH
T ss_pred EEEEEccCCCEEEEEEecCCcchHHHHHHHHHHHHHHHHHhcC----CCceeeccEEEEecCCCceEEEeCC-ccHHHHH
Confidence 9999999999999999999999999999999999999999873 7899999999999999999999998 5888876
Q ss_pred HHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH----HHHHHHHHHHHHHH
Q 000149 1848 QDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW----FRARVAYAHTTAVW 1923 (2037)
Q Consensus 1848 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w----~~aR~~Ft~SlAv~ 1923 (2037)
.. .| .+.+||.+.+|++..| +.+|.+|++|+|+|
T Consensus 430 ~~----~~--------------------------------------~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~y 467 (614)
T 3ls8_A 430 DT----EG--------------------------------------SIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGY 467 (614)
T ss_dssp HH----TS--------------------------------------SHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHH
T ss_pred Hc----cC--------------------------------------hHHHHHHHhCCCccccccccHHHHHHHHHHHHHH
Confidence 43 00 2467888888887765 57999999999999
Q ss_pred HHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh----HHHHHhhHHH
Q 000149 1924 SMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF----IVILSPLFFP 1998 (2037)
Q Consensus 1924 SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~----~~~~~~~f~~ 1998 (2037)
||+|||||||||||+||||| .||+++|||||++|++++ +||.||||||+||++ ||..|.+| ...+..+|.+
T Consensus 468 Svv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~p---~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~ 543 (614)
T 3ls8_A 468 CVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRDP---KPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLH 543 (614)
T ss_dssp HHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCCS---SSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHH
T ss_pred hHhheeeeccCCCCcceeEc-CCCCEeeeehHHhhccCC---CCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999 799999999999999884 799999999999999 88888875 4445578889
Q ss_pred hhh---hhhHhhcccCCCCccchhhh
Q 000149 1999 LKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1999 ~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+|+ .|+.++++|. ++-+||+..
T Consensus 544 LR~~~~~il~l~~lM~-~s~lp~~~~ 568 (614)
T 3ls8_A 544 LRRYSNLILNLFSLMV-DANIPDIAL 568 (614)
T ss_dssp HHHTHHHHHHHHHTTT-TSCCHHHHT
T ss_pred HHHCHHHHHHHHHHHh-cCCCCcccc
Confidence 998 7888899998 667999974
No 2
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=100.00 E-value=7.7e-49 Score=505.90 Aligned_cols=420 Identities=15% Similarity=0.213 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccc---cCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHH
Q 000149 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQR---AGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQL 1602 (2037)
Q Consensus 1526 ~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQL 1602 (2037)
+.|+.-|++|+.+.+..-..-...+|.-|-..+....- .+.-. +..|.+.--+.+...|....+..+|||
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dALeLL~~~f~-------~~~VR~yAV~~L~~~~de~L~~YLlQL 148 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPTFT-------HPQVRKYAVSRLAQAPDEDLLLYLLQL 148 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHHHHHHSTTCC-------CHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHhcccCC-------CHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 46999999999988765444455799999543321000 00001 123444445567778999999999999
Q ss_pred HhhccCCChH----------------------------------------------------------------------
Q 000149 1603 VSRICHQNEE---------------------------------------------------------------------- 1612 (2037)
Q Consensus 1603 iSRI~h~~~~---------------------------------------------------------------------- 1612 (2037)
|..|.+.+..
T Consensus 149 VQALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (696)
T 2x6h_A 149 VQALKYEDPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSPGS 228 (696)
T ss_dssp HHHGGGSCHHHHHHHHHHHC------------------------------------------------------------
T ss_pred HHHHHhcchhhhcccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999887310
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHhcc---hhHHHHHHHhhcC
Q 000149 1613 -----------------------------------------------IVRLVKHIITSVLRQYP---QQGLWIMAAVSKS 1642 (2037)
Q Consensus 1613 -----------------------------------------------v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS 1642 (2037)
+..-|...|.+-+...| ++.+|+|.+.+..
T Consensus 229 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~ 308 (696)
T 2x6h_A 229 AGGSGSGGQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEVEE 308 (696)
T ss_dssp --------------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhccC
Confidence 01122333444443333 7889999988754
Q ss_pred --C----cHHHHHHHHHHHHHHHhcCCC----CCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccC
Q 000149 1643 --T----IPSRREAAAEIIQAAKKGSAH----GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPL 1712 (2037)
Q Consensus 1643 --~----~~~R~~~a~~Il~~~k~~~~~----~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~ 1712 (2037)
. .+....+...|++.+...... +......+..-..++++|.+++..-...+..+ ......++.+...
T Consensus 309 ~~~~~~~~~~~~~~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~~~---~~k~e~L~~~L~~ 385 (696)
T 2x6h_A 309 VESVRKQDERAHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPGNR---NKKTEKFQKLLAE 385 (696)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCH---HHHHHHHHHHHHS
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCccH---HHHHHHHHHHhcc
Confidence 1 133455666666655322111 01123445555667888888764311100000 0111122222110
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeecc-ceEEecCCCceeEEEEEecC-CCeeeEEecCCCcch
Q 000149 1713 GIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLLGSD-GIKRPFLCKPKDDLR 1790 (2037)
Q Consensus 1713 ~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~-~v~V~~S~~~Prki~i~Gsd-Gk~y~fLvK~~dDlR 1790 (2037)
.. ++ ...+... ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+|+| |+.|+||+|++||+|
T Consensus 386 ~~--~~----~~~l~~~--------~~~~lP~~p~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~gDDLR 451 (696)
T 2x6h_A 386 QD--MF----KVNFTNF--------EPIPFPLDPEIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDDLR 451 (696)
T ss_dssp TT--SS----SSCTTSC--------CCEECSSCTTSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECSSCTH
T ss_pred hh--hc----ccccccC--------CCccCCCCCCeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEecCcccc
Confidence 00 00 0001000 012334456689999985 69999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHH
Q 000149 1791 KDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIY 1870 (2037)
Q Consensus 1791 qD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~ 1870 (2037)
||+|+||++++||.+|+++. ++|++++|+|||+++++||||||++ .|+++|++++
T Consensus 452 QD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~s-~tl~~i~~~~-------------------- 506 (696)
T 2x6h_A 452 QDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVDS-CTVAEVLARE-------------------- 506 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCCC-EEHHHHHHHS--------------------
T ss_pred hhHHHHHHHHHHHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCCC-ccHHHHHHhc--------------------
Confidence 99999999999999999984 8999999999999999999999975 7999998641
Q ss_pred HHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCC
Q 000149 1871 DQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF----RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTT 1946 (2037)
Q Consensus 1871 ~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~----~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~t 1946 (2037)
+ .+++||.+.||++..|| .+|++|++|+|+|||+|||||||||||+||||| .|
T Consensus 507 ----~------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid-~t 563 (696)
T 2x6h_A 507 ----G------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT-TN 563 (696)
T ss_dssp ----S------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-TT
T ss_pred ----C------------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-CC
Confidence 0 15689999999998876 899999999999999999999999999999999 69
Q ss_pred CcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh----HHHHHhhHHHhhh---hhhHhhcccCCCCccch
Q 000149 1947 GDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF----IVILSPLFFPLKK---ILIYVCLVPQPSSFYSC 2018 (2037)
Q Consensus 1947 G~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~----~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~ 2018 (2037)
|+++|||||++|++++ +||.||||||+||++ ||..|.+| ...+..+|.++|+ .|..++++|- ++-+||
T Consensus 564 G~v~HIDFG~~f~~~p---~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml-~~~lp~ 639 (696)
T 2x6h_A 564 GKLFHIDFGYILGRDP---KPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMV-DATVPD 639 (696)
T ss_dssp SCEEECCCCSCTTCCS---SSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-TCCCTT
T ss_pred CCEEEEeehhhhccCC---CCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH-cCCCCc
Confidence 9999999999999884 699999999999999 89888875 3445577788888 7777888885 566899
Q ss_pred hhh
Q 000149 2019 EYS 2021 (2037)
Q Consensus 2019 ~~~ 2021 (2037)
+..
T Consensus 640 ~~~ 642 (696)
T 2x6h_A 640 IAL 642 (696)
T ss_dssp TTS
T ss_pred ccc
Confidence 874
No 3
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=100.00 E-value=2.2e-49 Score=527.24 Aligned_cols=427 Identities=19% Similarity=0.273 Sum_probs=298.7
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHH---hh--hcCc--cccc-cCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhh
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTL---WF--DFGS--ICQR-AGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTV 1598 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtL---Wl--~~g~--~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~ 1598 (2037)
.|+..+++|+.+.+.....-+-.+|.- |- .... ...- ...-. ...|.+..-+.+..+|...++.+
T Consensus 446 ~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~-------d~~VR~yAV~~L~~~~d~~l~~Y 518 (961)
T 1e7u_A 446 KAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFS-------DENVRAIAVQKLESLEDDDVLHY 518 (961)
T ss_dssp GGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCC-------CHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCC-------CHHHHHHHHHHHHhCCHHHHHHH
Confidence 477888889988876544555667776 82 1110 0000 00001 12355666677899999999999
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHH--HhcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 000149 1599 LPQLVSRICHQNEEIVRLVKHIITSVL--RQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFT 1676 (2037)
Q Consensus 1599 lPQLiSRI~h~~~~v~~~l~~Ii~~v~--~~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~ 1676 (2037)
+||||..|.+..-.-..+..-||.+.. ....++.+|.|.+.... .+....+...|++....... ......+..-.
T Consensus 519 L~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~-~~~~~~r~~~ll~~~l~~~~--~~~~~~~~~q~ 595 (961)
T 1e7u_A 519 LLQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQ-SRHYQQRFAVILEAYLRGCG--TAMLHDFTQQV 595 (961)
T ss_dssp HHHHHHHGGGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CTTTHHHHHHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCChHHHHHHHHHhcChHHHHHHHHHhhhhccC-ChhHHHHHHHHHHHHHhhcc--HHHHHHHHHHH
Confidence 999999998864211223333333333 34568899999886531 12334456678887765432 11112233334
Q ss_pred HHHHHHHHHHhccCCccccccchhh-hhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeee-c
Q 000149 1677 SLIDHLIKLCFHAGQSKSRTINIST-EFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-A 1754 (2037)
Q Consensus 1677 ~l~~~Li~l~~~~~~~~~~~~~ls~-~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f-~ 1754 (2037)
.+.+.|.++|..-.........++. ....++.. +.....+.+|+... .|+ .+.++|.+| .
T Consensus 596 ~~~~~L~~i~~~ik~~~~~~~~~~~~~~~~l~~~--------L~~l~~i~vP~~~~--------lP~--dP~v~i~~i~~ 657 (961)
T 1e7u_A 596 QVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQK--------LENLQNLNLPQSFR--------VPY--DPGLKAGALVI 657 (961)
T ss_dssp HHHHHHHHHHHHSGGGGCCSSCCCHHHHHHHHHH--------HHHHHHTTSCSCEE--------ETT--EEEEEEEEECG
T ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHH--------HHhhhcCcCCCCcc--------CCC--CCceEEEEeec
Confidence 5677777777432111111111111 11112111 11112345554211 122 245789897 6
Q ss_pred cceEEecCCCceeEEEEEecCCC-----eeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1755 DEAEILSSLQRPKKIVLLGSDGI-----KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1755 ~~v~V~~S~~~Prki~i~GsdGk-----~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
+.+.|++|+++||+++++|+||+ .|+||+|++||||||+|+||++++||.+|+++ +|+|++++|+|+|+++
T Consensus 658 ~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~gDDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~ 733 (961)
T 1e7u_A 658 EKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLDLCLLPYGCISTGD 733 (961)
T ss_dssp GGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEET
T ss_pred ceEEEecccCCceEEEEEccCCCcccCCceeEEEecCcccccchhHHHHHHHHHHHHhhc----CCCeEEEeeeEEECCC
Confidence 88899999999999999999996 89999999999999999999999999999875 5899999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAA 1908 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~ 1908 (2037)
++||||||+|+.|+++|++... |.. + .+ .++|++||.+.+|+++.
T Consensus 734 ~~GlIE~V~ns~tl~~I~~~~~---g~~-----------------~--------------~f~~~~L~~w~~~~~~~~~~ 779 (961)
T 1e7u_A 734 KIGMIEIVKDATTIAKIQQSTV---GNT-----------------G--------------AFKDEVLSHWLKEKCPIEEK 779 (961)
T ss_dssp TEEEEECCSSEEEHHHHHHHHS---CSS-----------------S--------------CCCSSHHHHHHHHHCCSHHH
T ss_pred CCCeEEecCCCccHHHHHHhcc---Ccc-----------------c--------------ccchhHHHHHHHHhCCChHH
Confidence 9999999999999999987642 110 0 01 24789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-C-CCCCCCcccChhHHh-hcccc
Q 000149 1909 WFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRLTQVRKS-YGLCA 1985 (2037)
Q Consensus 1909 w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~-~pE~VPFRLT~nmvd-~G~~g 1985 (2037)
|+.+|++|++|+|+|||+|||||||||||+||||| .||+++|||||++|++++.+ . .||.||||||+||++ ||..|
T Consensus 780 ~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~~mG~~g 858 (961)
T 1e7u_A 780 FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIS-ETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSG 858 (961)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEE-TTCCEEECCCCCC----------CCCCCSSCCCHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCcceEEe-cCCCEEEEeehhhhccCccccCCCCCCCCcccCHHHHHHhcccC
Confidence 99999999999999999999999999999999999 59999999999999999874 3 499999999999999 89887
Q ss_pred hh-------hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1986 MH-------FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1986 ~e-------~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
.+ |...+..+|.++|+ .|..++++|-. +-+||+..
T Consensus 859 ~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~-~~lp~~~~ 903 (961)
T 1e7u_A 859 KKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLM-TGMPQLTS 903 (961)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HSCSSCCC
T ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCCCccCc
Confidence 66 45556678888988 77778888764 67899975
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=100.00 E-value=3.9e-49 Score=525.02 Aligned_cols=428 Identities=17% Similarity=0.204 Sum_probs=299.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+- -+..+ .+..|.+..-+.+..+|...|+.++||||..|
T Consensus 440 ~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeL--L~~~f--~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaL 515 (940)
T 2wxf_A 440 EALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALEL--LDFSF--PDCYVGSFAIKSLRKLTDDELFQYLLQLVQVL 515 (940)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHH--TSTTC--CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHG
T ss_pred hHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHHHHHHh--cCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 477778888887765444445577777843221000000 00000 12346666667889999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHH--hcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHH
Q 000149 1607 CHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIK 1684 (2037)
Q Consensus 1607 ~h~~~~v~~~l~~Ii~~v~~--~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~ 1684 (2037)
.|.+-.-..+..-||.+... .++++.+|.|.+... .+....+...|++.+..... .....+.+| ..+.++|.+
T Consensus 516 kyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~--~~~~~~r~~~ile~~~~~~~--~~~~~l~~q-~~~~~~L~~ 590 (940)
T 2wxf_A 516 KYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMH--VPSVALRFGLIMEAYCRGST--HHMKVLMKQ-GEALSKLKA 590 (940)
T ss_dssp GGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHHHHHCH--HHHHHHHHH-HHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHhChHHHHHHHHHheeccc--CchHHHHHHHHHHHHHhhcH--HHHHHHHHH-HHHHHHHHH
Confidence 99753223455555555553 478999999988754 34566778888888765432 122233333 467777777
Q ss_pred HHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEecCC
Q 000149 1685 LCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSSL 1763 (2037)
Q Consensus 1685 l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~~S~ 1763 (2037)
++..-.. ..+...-.+....+++...... . ...+|+ .+.|+ .+.++|.+|. +.+.|++|+
T Consensus 591 i~~~ik~-~~~~~~r~k~~~~L~~~l~~~~------~-~~~~~~---------~~lP~--~P~~~I~~~~~~~~~V~~S~ 651 (940)
T 2wxf_A 591 LNDFVKV-SSQKTTKPQTKEMMHMCMRQET------Y-MEALSH---------LQSPL--DPSTLLEEVCVEQCTFMDSK 651 (940)
T ss_dssp HHHHHHH-HTTTSCHHHHHHHHHHHHTSHH------H-HHHHSS---------EEETT--EEEEEECEECGGGCEECSST
T ss_pred HHHHHhh-ccccccHHHHHHHHHHHHhccc------h-hhccCC---------CCCCC--CCceeEEEeccCceEEcccc
Confidence 7743110 0000001111233333321100 0 001111 12222 3568999997 689999999
Q ss_pred CceeEEEEEecC---CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1764 QRPKKIVLLGSD---GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1764 ~~Prki~i~Gsd---Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
++||+|+++|+| |+.|+||+|++||||||+|+||++++||.+|+++ +++|++++|+|+|+++++||||||+|+
T Consensus 652 ~~P~~l~~~gsD~~~G~~~~~i~K~gDDLRqD~rv~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~~~GlIE~V~ns 727 (940)
T 2wxf_A 652 MKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYGCLPTGDRTGLIEVVLHS 727 (940)
T ss_dssp TCCEEEEEECTTTGGGGCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEETTEEEEECCSSE
T ss_pred cCCeEEEEEecCcCCCcceeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEEeeeEEEecCCCCeEeECCCC
Confidence 999999999999 9999999999999999999999999999999987 489999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARVAYAHT 1919 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~~Ft~S 1919 (2037)
.|+++|++. .+.... ...+ .++|++||.+.+|+ ..|+++|.+|++|
T Consensus 728 ~tl~~I~~~----~~~~~~----------------------------~~~f~~~~l~~~~~~~~~~-~~~~~a~~~F~~S 774 (940)
T 2wxf_A 728 DTIANIQLN----KSNMAA----------------------------TAAFNKDALLNWLKSKNPG-EALDRAIEEFTLS 774 (940)
T ss_dssp EEHHHHHTC----CSSSTT----------------------------CCSSGGGHHHHHHHHHSCT-THHHHHHHHHHHH
T ss_pred ccHHHHHHh----hccchh----------------------------hhccCchhHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 999999643 111100 0112 24789999999954 6788999999999
Q ss_pred HHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCC-CCCC-CCCCCcccChhHHh-hcc--cchh-----hH
Q 000149 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQVRKS-YGL--CAMH-----FI 1989 (2037)
Q Consensus 1920 lAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~-~l~~-pE~VPFRLT~nmvd-~G~--~g~e-----~~ 1989 (2037)
+|+|||+|||||||||||+|||||+ ||+++|||||++|++++ .+.. ||.||||||+||++ +|. .|.+ |.
T Consensus 775 ~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~~g~Fr 853 (940)
T 2wxf_A 775 CAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFR 853 (940)
T ss_dssp HHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCcchhhHH
Confidence 9999999999999999999999995 99999999999999864 4554 99999999999999 554 2322 45
Q ss_pred HHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1990 VILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1990 ~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
..+..+|.++|+ .|..++++|- ++-+||+..
T Consensus 854 ~~c~~~~~~LR~~~~~ll~ll~lml-~~~lp~~~~ 887 (940)
T 2wxf_A 854 GYCERAYTILRRHGLLFLHLFALMR-AAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHG-GGCCTTSCS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh-CCCCcccCc
Confidence 556677888888 7777888887 455788874
No 5
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=100.00 E-value=7.7e-49 Score=525.11 Aligned_cols=426 Identities=17% Similarity=0.204 Sum_probs=306.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCcccccc---CCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHH
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRA---GSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLV 1603 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLi 1603 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+ +.-.+ ..|.+..-+.+..+|...++.++||||
T Consensus 593 ~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d-------~~VR~yAV~~L~~~~d~~l~~yLpQLV 665 (1092)
T 2y3a_A 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPD-------QYVREYAVGCLRQMSDEELSQYLLQLV 665 (1092)
T ss_dssp GGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCC-------TTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCccCCC-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888889998876654445567777783332100000 00011 234455556778899999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHH--hcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 000149 1604 SRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDH 1681 (2037)
Q Consensus 1604 SRI~h~~~~v~~~l~~Ii~~v~~--~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~ 1681 (2037)
..|.|..-.-..+..-||.+... .+.++.+|.|.+.... +....+...+++.+..... .....+.+| ..+.++
T Consensus 666 QaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~~~--~~~~~l~~Q-~~~~~~ 740 (1092)
T 2y3a_A 666 QVLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRGSV--GHMKVLSKQ-VEALNK 740 (1092)
T ss_dssp HHHHHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHTT--TTHHHHHHH-HHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhhcH--HHHHHHHHH-HHHHHH
Confidence 99998754334556666666664 3779999999987653 4456677888888766543 222334444 366777
Q ss_pred HHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEe
Q 000149 1682 LIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEIL 1760 (2037)
Q Consensus 1682 Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~ 1760 (2037)
|.++|..-.. ..+...-.+....+++....... ...+|+ .+.| ..+.++|.+|. +.+.|+
T Consensus 741 L~~is~~ik~-~~~~~~r~k~~e~L~~~l~~~~~-------~~~~~~---------~~lP--~~P~v~I~~~~~~~~~V~ 801 (1092)
T 2y3a_A 741 LKTLNSLIKL-NAVKLSRAKGKEAMHTCLKQSAY-------REALSD---------LQSP--LNPCVILSELYVEKCKYM 801 (1092)
T ss_dssp HHHHHHHHHH-HHHHSCHHHHHHHHHHHHHSTTH-------HHHTSS---------SCCS--SCSSBCCCCCCGGGCEEC
T ss_pred HHHHHHHHhh-ccccccHHHHHHHHHHHhhccch-------hhcCCC---------CCCC--CCCceEEEEEecCceEEe
Confidence 7777643110 00000001112233333211100 001121 1222 34678999997 589999
Q ss_pred cCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecC
Q 000149 1761 SSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838 (2037)
Q Consensus 1761 ~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~ 1838 (2037)
+|+++||+|+|+|+| |+.|+||+|++||||||+|+||++++||.+|+++ +++|++++|+|||+++++||||||+
T Consensus 802 ~S~~~P~rL~~~gsD~~G~~y~~L~K~gDDLRQD~rv~Ql~~lmn~ll~~~----~~~L~i~~Y~Vipls~~~GLIE~V~ 877 (1092)
T 2y3a_A 802 DSKMKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEA----GLDLRMLPYGCLATGDRSGLIEVVS 877 (1092)
T ss_dssp SSTTCCEEEEEECTTTSSSEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH----SCCCCCCCCCEECCSSSCCEEECCT
T ss_pred ccccCceEEEEEecCCCCceeeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEecceEEEecCCCCeEeeCC
Confidence 999999999999999 9999999999999999999999999999999987 4899999999999999999999999
Q ss_pred CCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHHHHH
Q 000149 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARVAYA 1917 (2037)
Q Consensus 1839 n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~~Ft 1917 (2037)
|+.|+++|++. .+.... ...+ +++|++||.+.++ +..|+++|++|+
T Consensus 878 ns~TL~~I~~~----~~~~~~----------------------------~~~f~~~~L~~~~~~~~~-~~~~~~ar~nF~ 924 (1092)
T 2y3a_A 878 TSETIADIQLN----SSNVAA----------------------------TAAFNKDALLNWLKEYNS-GDDLDRAIEEFT 924 (1092)
T ss_dssp TCCBHHHHHSS----SCTTTT----------------------------TSCSSTTHHHHHHHHHCC-THHHHHHHHHHH
T ss_pred CCccHHHHHHh----hccchh----------------------------hhccCchHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 99999999643 111100 0011 3578999999994 467889999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCC-CCCC-CCCCCcccChhHHh-hccc--ch-----h
Q 000149 1918 HTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQVRKS-YGLC--AM-----H 1987 (2037)
Q Consensus 1918 ~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~-~l~~-pE~VPFRLT~nmvd-~G~~--g~-----e 1987 (2037)
+|+|+|||+|||||||||||+||||| .||+++|||||++|++++ .+.. ||.||||||+||++ +|.. |. .
T Consensus 925 ~SlA~ySvv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~ 1003 (1092)
T 2y3a_A 925 LSCAGYCVASYVLGIGDRHSDNIMVK-KTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGR 1003 (1092)
T ss_dssp HHHHHHHHHHHHTTCCCCCTTTEEEC-TTSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTH
T ss_pred HHHHHHHHHHHHhcCCCCCCccEEEe-cCCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcchhh
Confidence 99999999999999999999999999 599999999999999875 3444 99999999999999 5532 32 2
Q ss_pred hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1988 FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1988 ~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
|...+..+|.++|+ .|..++++|-. +-+||+...
T Consensus 1004 Fr~~c~~a~~~LR~~~~~Il~ll~lml~-~~Lp~~~~~ 1040 (1092)
T 2y3a_A 1004 FRQCCEDAYLILRRHGNLFITLFALMLT-AGLPELTSV 1040 (1092)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTST-TCCSSCSSH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhC-CCCccccch
Confidence 46667788888998 77778888874 567888753
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=100.00 E-value=2.6e-46 Score=496.41 Aligned_cols=426 Identities=17% Similarity=0.215 Sum_probs=289.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhc-CCCCchhhHhhHHHHHhh
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCL-KDLPAYQWLTVLPQLVSR 1605 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lP~~~wlt~lPQLiSR 1605 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+- -...+ .+..|.+.--+.+ ..+|....+..+||||..
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeL--L~~~f--~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQA 661 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMEL--LDCNY--PDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQV 661 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHT--TSTTC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHG
T ss_pred hHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHh--CcccC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 578888999888876544456678888843321000000 00000 0123444444566 778999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHH
Q 000149 1606 ICHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHL 1682 (2037)
Q Consensus 1606 I~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~L 1682 (2037)
+.+..-.-..+..-||.|.. ..| ++.+|.|.+.+.... -..+...+++.....+. .....+.+|. .+.+.|
T Consensus 662 LKyE~~~ds~La~FLl~RAl-~n~~igh~lfW~L~~E~~~~~--~~~r~~~lLe~~~~~~~--~~~~~l~rQ~-~~~~~L 735 (1091)
T 3hhm_A 662 LKYEQYLDNLLVRFLLKKAL-TNQRIGHFFFWHLKSEMHNKT--VSQRFGLLLESYCRACG--MYLKHLNRQV-EAMEKL 735 (1091)
T ss_dssp GGGCSSSSCHHHHHHHHHHT-TCHHHHHHHHHHHHTTTTCTT--THHHHHHHHHHHHHHSC--THHHHHHHHH-HHHHHH
T ss_pred HhhccccccHHHHHHHHHHh-hCHHHHHHHHHHeeecccCch--HHHHHHHHHHHHHhhCH--HHHHHHHHHH-HHHHHH
Confidence 98864321233444444433 334 667999988664322 23455667777655432 2223344443 567777
Q ss_pred HHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEec
Q 000149 1683 IKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILS 1761 (2037)
Q Consensus 1683 i~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~~ 1761 (2037)
.+++..-... .+.-+-...-..++...... .. ...+. .- +.|..+.++|.+|. +.+.|++
T Consensus 736 ~~is~~ik~~-~~~~~~~~k~~~L~~~L~~~---~~-----~~~~~--------~~--~lPl~P~~~I~~i~~~~~~V~~ 796 (1091)
T 3hhm_A 736 INLTDILKQE-KKDETQKVQMKFLVEQMRRP---DF-----MDALQ--------GF--LSPLNPAHQLGNLRLEECRIMS 796 (1091)
T ss_dssp HHHHHHTTST-TCCSCHHHHHHHHHHHHHSH---HH-----HHHSS--------SE--EETTEEEEEECSBCGGGCEECC
T ss_pred HHHHHHHhhh-ccccchHHHHHHHHHHHhcc---ch-----hhccc--------CC--CCCCCcceEEEEEeeceEEEee
Confidence 7776432111 00000000001122111000 00 00000 00 12224668999997 6789999
Q ss_pred CCCceeEEEEEecC--CCee----eEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeE
Q 000149 1762 SLQRPKKIVLLGSD--GIKR----PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVE 1835 (2037)
Q Consensus 1762 S~~~Prki~i~Gsd--Gk~y----~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIE 1835 (2037)
|+++|++|+|+|+| |+.| +||+|++||||||+|+||++++||.+|+++. ++|++++|+|+|+++++||||
T Consensus 797 S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~gDDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlIE 872 (1091)
T 3hhm_A 797 SAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLIE 872 (1091)
T ss_dssp SSSCCEEEEECCCSTTSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEEE
T ss_pred cccCcEEEEEecCCCCCccccccceEEEEcCcchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCccee
Confidence 99999999999998 8999 9999999999999999999999999999984 899999999999999999999
Q ss_pred ecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHH
Q 000149 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARV 1914 (2037)
Q Consensus 1836 wv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~ 1914 (2037)
||+|+.|+++|+++. |. . +. ..| +++|++||.+.| ++..|+++|.
T Consensus 873 ~V~ns~Tl~~I~~~~----~~-~----------------~~------------~~f~~~~L~~~f~~~~-~~~~~~~ar~ 918 (1091)
T 3hhm_A 873 VVRNSHTIMQIQCKG----GL-K----------------GA------------LQFNSHTLHQWLKDKN-KGEIYDAAID 918 (1091)
T ss_dssp CCSSEEEHHHHHHSC----TT-T----------------CT------------TCCCTTHHHHHHHTTS-CTTSHHHHHH
T ss_pred ecCCchhHHHHHHhh----Cc-c----------------cc------------cccCchHHHHHHHhcC-ChHHHHHHHH
Confidence 999999999997642 11 0 00 001 357899999999 6667999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-C-CCCCCCCcccChhHHh-hc--ccch---
Q 000149 1915 AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFRLTQVRKS-YG--LCAM--- 1986 (2037)
Q Consensus 1915 ~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l-~~pE~VPFRLT~nmvd-~G--~~g~--- 1986 (2037)
+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|+++++ + ..||.||||||+||++ +| ..|.
T Consensus 919 nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s 997 (1091)
T 3hhm_A 919 LFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKT 997 (1091)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSS
T ss_pred HHHHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccc
Confidence 999999999999999999999999999995 999999999999998753 3 4599999999999999 54 4442
Q ss_pred ----hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1987 ----HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1987 ----e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
.|...+..+|.++|+ .|+.++++|- ++-+||+..
T Consensus 998 ~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~-~s~lp~~~~ 1038 (1091)
T 3hhm_A 998 REFERFQEMCYKAYLAIRQHANLFINLFSMML-GSGMPELQS 1038 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGG-GSCCTTCSS
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCCccCc
Confidence 245666788899999 7888889884 578999984
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.98 E-value=7.8e-06 Score=111.70 Aligned_cols=668 Identities=15% Similarity=0.149 Sum_probs=366.1
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
+|.|+...||..++..+-.|+-..+|.....+...|..........+++.-...||.+.--++.. .+... +
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~----~-- 168 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDV----L-- 168 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCS----S--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhh----h--
Confidence 47888999999999999999887777666666666666666666677776655565554333211 00000 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHH
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2037)
+.....-+..+++++.-+.-+.+...-.-. ..++... .. ...-.+..+-+.+++++- ..+++|+.+++.+
T Consensus 169 ---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL-~~~~~~~---~~--~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 169 ---DRPLNIMIPKFLQFFKHSSPKIRSHAVACV-NQFIISR---TQ--ALMLHIDSFIENLFALAG-DEEPEVRKNVCRA 238 (852)
T ss_dssp ---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHH-HTTTTTT---CH--HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcc---cH--HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 000111122233333211100000000000 0011000 00 011123344455666554 4577899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHh--
Q 000149 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF-- 249 (2037)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (2037)
|.++..+.... +..-....+..+-.++.|++..||..++..+..+.+.......+. ..-..++..+...+
T Consensus 239 L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~-------~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 239 LVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-------RHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT-------TTHHHHHHHHHHHTSC
T ss_pred HHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 99999876532 212122333333345589999999999988887664432111111 01112222222222
Q ss_pred ---------hh-----c-----CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 250 ---------TA-----A-----DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 250 ---------~~-----~-----~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
.+ . .+..+......+++.+.... +.+++...+-.|.+.|.+++.-+|-.|..-|-.++.
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 11 0 23357778888888885433 567777777778899999999999999999999987
Q ss_pred hhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHH-----Hhhcccccchhhhcc-ccChh--
Q 000149 311 FHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV-----KKMIPAVLPKLVVSQ-QDNDQ-- 382 (2037)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL-----~~~~~~~LP~LVl~~-~~~~~-- 382 (2037)
.... .+.++. +.+.+.+..-+......++.-|...+|- ..+.+ ......++|.|+-.- ..+..
T Consensus 389 ~~~~----~~~~~l----~~~l~~l~~~l~d~~~~Vr~~a~~~l~~-l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 389 GCMQ----GMIPYL----PELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp TTHH----HHGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH-THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred cchH----HHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6643 122222 4666777777764444445433333431 11211 122334556665421 11222
Q ss_pred --HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccccHH---HHHHHHHHHHhhcCC--ChHHHHHhhhHHHHHHH
Q 000149 383 --AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQADER---RLLSALEFYCIQTGS--DNQEIFAAALPALLDEL 452 (2037)
Q Consensus 383 --~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~~~~---~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~el 452 (2037)
+...|..+++..+....+ +++.|+..|+ .+.... .+.+++..+....+. ...+.+...+|.++.-+
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~----~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVP----YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHh----HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 335666677666654433 4555555444 222222 245666655443332 22345666666666433
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhh------------cCCCChHHHHHHH
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM------------LHAEDLSLQKQAL 520 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l------------~~~~~~~~k~~~l 520 (2037)
-.+.+.+.+- + .+.+++..+++.+. ..+..|+.+=+-.++..+...+ ...++...+..++
T Consensus 536 -~~l~d~~~~~---~--~~~~~l~~i~~~~g--~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l 607 (852)
T 4fdd_A 536 -NMLKDEDKDL---F--PLLECLSSVATALQ--SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 607 (852)
T ss_dssp -HHSCTTCTTH---H--HHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred -HhcccccHHH---H--HHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence 2233333221 1 23455555554432 2344555543333444444332 1123455677899
Q ss_pred HHHHHHHHHhccccccch--HHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCC
Q 000149 521 KRIEILIEMIGSHLTTYV--PKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2037)
Q Consensus 521 ~sl~~li~l~g~~v~~~~--pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2037)
..|+.+++-+|+++..+. ++++..|...++. ++++..++.+|..++..+. ..+.+++..++..++..++.
T Consensus 608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~l~~~lp~l~~~l~~-- 681 (852)
T 4fdd_A 608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----QHVKPCIADFMPILGTNLNP-- 681 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG----GGTGGGHHHHHHHHHHTCCT--
T ss_pred HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCc--
Confidence 999999999999988876 8899988888864 5789999999999998753 57889999988888888742
Q ss_pred CCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCC--ChhHHHH
Q 000149 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHE--NLNVRYM 674 (2037)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~e--n~~Vr~~ 674 (2037)
+ ....++.|...+..+...-.+.+ -|.++ ..+..+++.+++. +..|+..
T Consensus 682 ~-~~~v~~~a~~alg~i~~~~~~~~---------~p~~~-------------------~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 682 E-FISVCNNATWAIGEISIQMGIEM---------QPYIP-------------------MVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHGGGG---------GGGTH-------------------HHHHHHHHHHTCSSCCHHHHHH
T ss_pred c-chHHHHHHHHHHHHHHHHhhHhH---------HHHHH-------------------HHHHHHHHHhCCCCCCchHHHH
Confidence 1 22345666666666653321111 12221 1122223333322 3467777
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000149 675 VVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2037)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2037)
+..-+.++...+.+.+. |-+++++..+++.-.+.. +.+-+..+.++|+.|=..-|+.+.
T Consensus 733 a~~~igrl~~~~~~~~~-----------~~l~~~~~~~~~~l~~~~----d~~e~~~a~~~l~~li~~~p~~~~------ 791 (852)
T 4fdd_A 733 TAITIGRLGYVCPQEVA-----------PMLQQFIRPWCTSLRNIR----DNEEKDSAFRGICTMISVNPSGVI------ 791 (852)
T ss_dssp HHHHHHHHHHHCHHHHG-----------GGHHHHHHHHHHHHHTSC----SSHHHHHHHHHHHHHHHHCGGGTG------
T ss_pred HHHHHHHHHHhCHHHhC-----------ccHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHhChHhHH------
Confidence 77777777766655332 236666776666554321 235677888888887666665322
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 755 FKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 755 ~~~~~~~~~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
.+|++ ++.|.-+-.+++.+ +.=+++.+|..+
T Consensus 792 -------~~~~~------~~~~~~~~~~~~~~--l~~~~~~~l~~~ 822 (852)
T 4fdd_A 792 -------QDFIF------FCDAVASWINPKDD--LRDMFCKILHGF 822 (852)
T ss_dssp -------GGHHH------HHHHHHTCSSCCHH--HHHHHHHHHHHH
T ss_pred -------HHHHH------HHHHHHhcCCCCHH--HHHHHHHHHHHH
Confidence 13332 34566666666544 334788888753
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.95 E-value=1.4e-05 Score=108.73 Aligned_cols=593 Identities=12% Similarity=0.094 Sum_probs=303.1
Q ss_pred hhhHHHHHHHhhccc-CccchhHHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh--
Q 000149 145 FSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-- 220 (2037)
Q Consensus 145 ~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-- 220 (2037)
...+-+.+...|-++ .+.+|+.+.+.+|..++.....+..... +...+..|..++.+++..+|.+++..+..+++.
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556666776664 4788999999998887765432211000 011223334445778888888888877766521
Q ss_pred ---------hhhhhhcc---ccccccchhhHHHHH------------------------------------HHHHHhhhc
Q 000149 221 ---------TVLSSLFL---DENASSRSNELKLLD------------------------------------VIKLAFTAA 252 (2037)
Q Consensus 221 ---------~~~~~~~~---~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~ 252 (2037)
.++..+.. +.+...+..-..|+. .+...+...
T Consensus 257 ~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 257 TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336 (861)
T ss_dssp GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 12221111 111111111111221 111222211
Q ss_pred ------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhh
Q 000149 253 ------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVL 326 (2037)
Q Consensus 253 ------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~ 326 (2037)
+++.+..+...+++.+.... +.+++...+-.+.+.|.+++.-+|-.|..-+-.++....+ +.+.++.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l-- 409 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK---VQRTYYV-- 409 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHHHH--
T ss_pred ccccccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH---HHHHHHH--
Confidence 22456666666777764333 4566665666677788888888888888888888643321 1111222
Q ss_pred hhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHH------hhcccccchhhhccccChh----HHHHHHHHHHHcCC
Q 000149 327 ICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK------KMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNT 396 (2037)
Q Consensus 327 ~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~------~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~ 396 (2037)
+.+.+.+...+......++.-|...+| ..-+++. ...+.++|.|+-.-+.+.. +...+..+++..+.
T Consensus 410 --~~il~~l~~~l~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 410 --HQALPSILNLMNDQSLQVKETTAWCIG-RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHH-HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHcCCCcHHHHHHHHHHHH-HHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc
Confidence 345555665554322223332211222 0111110 1122334444432111111 23456666665542
Q ss_pred CchhHHhhhHHHHHHHHh---cc-cc----HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcC-----CCc--
Q 000149 397 DMVPLIVTWIPKVLAFAL---HQ-AD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDG-----GDS-- 461 (2037)
Q Consensus 397 ~~~~l~~~~~~~Ila~ll---~~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~-----~~~-- 461 (2037)
.....+..+++.|+..|+ .. +. ...+.++|..+....+.+....+...+|.++..|.-.+.. .+.
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 111223345555555444 21 21 3346677777776666555556666667676544322111 111
Q ss_pred hHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHH
Q 000149 462 DEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541 (2037)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI 541 (2037)
++.......+..++..+.+.+. ..+..|+.+-+-.++..++..- .+ ..+..++.+++.+.+.+|.++..+.|+|
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i 640 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKD---SA-FIEDDVFYAISALAASLGKGFEKYLETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTT---GG-GTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCC---CC-cHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111123344444443332 2344555544434444443211 11 4578899999999999999988899999
Q ss_pred HHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000149 542 LVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2037)
Q Consensus 542 ~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2037)
+-.|...++ .++.+..++.+-..+++.+. +.+.+++..++..++..+.... .....+..+...+..++...++
T Consensus 641 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~-~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 641 SPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPN-ARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchHHHHHHHHHHHhCCcc-ccHhhhHHHHHHHHHHHHHhhh
Confidence 988888885 34567777777777777764 4688888888888888775321 1123567777888777665333
Q ss_pred HHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCH-HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccC
Q 000149 620 ILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTL-KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEA 698 (2037)
Q Consensus 620 ~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l-~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~ 698 (2037)
.+..|+..+ +|. +. +......+. .+....+ ...||..++..+..++..-.+. . +.
T Consensus 716 ~~~~~l~~~-----l~~---l~---~~~~~~~~~~d~d~~~~-------~~~vr~~~l~~~~~i~~~l~~~-~-----~~ 771 (861)
T 2bpt_A 716 DFIPYLNDI-----MAL---CV---AAQNTKPENGTLEALDY-------QIKVLEAVLDAYVGIVAGLHDK-P-----EA 771 (861)
T ss_dssp GGHHHHHHH-----HHH---HH---HHHTCCCSSSSHHHHHH-------HHHHHHHHHHHHHHHHHHTTTC-H-----HH
T ss_pred hHHHHHHHH-----HHH---HH---HHHhcCCCCCChHHHHH-------HHHHHHHHHHHHHHHHHHHccC-H-----HH
Confidence 332222111 111 11 111111100 0000001 1245666666666555332210 0 00
Q ss_pred CCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc-c-CcccccccccccccccccChhhHHHHHHHHHHHH
Q 000149 699 CSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA-V-DPAKVKGFSCQRFKIECSDDDLIFELIDKHLARA 776 (2037)
Q Consensus 699 ~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa-l-Dp~r~~~~~~~~~~~~~~~~~F~~~ll~~~Lv~a 776 (2037)
. .+.+..++..|..++.+.+. ..+..++..++.|||.+.. + .+ .+. . .-...|+-. |.+.
T Consensus 772 ~--~~~~~~i~~~l~~~~~d~~~-~~~~~vr~~a~~~l~~l~~~~~g~-~~~--------~-~~~~~~~~~-----ll~~ 833 (861)
T 2bpt_A 772 L--FPYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDG-SIK--------Q-FYGQDWVID-----YIKR 833 (861)
T ss_dssp H--GGGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTS-TTG--------G-GTTCHHHHH-----HHHH
T ss_pred H--HHHHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHHHcCCc-hHH--------H-HHhcHHHHH-----HHHH
Confidence 1 14677888888777754310 0025899999999998843 3 22 111 0 111133332 4455
Q ss_pred HHc--CCChhhHhHHHHHHHHHHHHc
Q 000149 777 FRA--APDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 777 f~s--~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
... ..+.+..+.+++|+.++=+..
T Consensus 834 l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 834 TRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 553 567788999999999886543
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.90 E-value=3.3e-06 Score=120.02 Aligned_cols=519 Identities=13% Similarity=0.169 Sum_probs=277.4
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
+|.|...+||..|+..+--++-.-++..+..+...|...-.+....|+......||.++-..|.... + +
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~--~-----~---- 124 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS--G-----S---- 124 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------------C----
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc--c-----c----
Confidence 4679999999999999988887666666677777776666677778888877777766544332200 0 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHH
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2037)
++.. .-..++-+.+++.+-+..+.+++-+++.+
T Consensus 125 -------------------------~~~~----------------------~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 125 -------------------------ALAA----------------------NVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp -------------------------CTHH----------------------HHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred -------------------------chHH----------------------HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 0000 00123445566666544567899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh
Q 000149 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA 251 (2037)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (2037)
|..++......+. .-....+.++-..+.|++..||.++++.+..+.+.. . ...-..++..+...+..
T Consensus 158 l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~------~------~~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 158 MADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC------G------NIVFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc------C------HHHHHHHHHHHHHHhcc
Confidence 9999976543321 122445566666679999999999999999986211 0 00112345555555555
Q ss_pred cCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhh
Q 000149 252 ADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2037)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~ 330 (2037)
.+++.+..+.+.+++.|+.++... ...+.-.+-.++..+...++.+|..|..-+..+++...+. +.++. +.
T Consensus 225 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~l----~~ 296 (1230)
T 1u6g_C 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV----ST 296 (1230)
T ss_dssp TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----HH
T ss_pred CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH----HHHhH----HH
Confidence 555567777888999886644110 0111233445677777888999999999999998865432 11111 12
Q ss_pred hhHHHHHhhcCchHH------------------------------------------HHHHHHHHhCC------------
Q 000149 331 LFDYLSVRLASRPIM------------------------------------------VREFAEAAFGV------------ 356 (2037)
Q Consensus 331 l~~~~~~~l~~~p~~------------------------------------------~~~~~e~ll~~------------ 356 (2037)
+.+.+.+.+...|.. +..+.. +...
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~-l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA-VVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH-HHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH-HHHhchhHHHHHHHHH
Confidence 222222222211110 011110 1110
Q ss_pred -----------------------------------------------ChHHHHHhhcccccchhhhc-cccChh----HH
Q 000149 357 -----------------------------------------------ETEELVKKMIPAVLPKLVVS-QQDNDQ----AV 384 (2037)
Q Consensus 357 -----------------------------------------------~~~~fL~~~~~~~LP~LVl~-~~~~~~----~~ 384 (2037)
+..+.+....+.++|.+.-. +..+.. +.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 00111222222222221110 001111 11
Q ss_pred HHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---ccc--HHHHHHHHHHHHhh---cCCC-hHHHHHhhhHHHHHHHHHh
Q 000149 385 NIINELAKCLNTDMVPLIVTWIPKVLAFALH---QAD--ERRLLSALEFYCIQ---TGSD-NQEIFAAALPALLDELICF 455 (2037)
Q Consensus 385 ~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~--~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~l~ell~~ 455 (2037)
..+.++++.....+.+ ++..|+..++. ... .+....++..+... .+.+ ....+...+|.++. .
T Consensus 456 ~~L~~l~~~~~~~l~~----~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~ 527 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQ----HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----C 527 (1230)
T ss_dssp HHHHHHHHHSTTTTGG----GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----H
T ss_pred HHHHHHHHHchhhhHH----HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----H
Confidence 2233333332222222 22222222221 110 12222222222221 1111 12223333333332 2
Q ss_pred hcCCCchHHhhhhcchhHHHHHHhhhcCC-----CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh
Q 000149 456 VDGGDSDEINERLNRVPRVIRKVSTVLTG-----NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI 530 (2037)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~ 530 (2037)
+.+.+... + .....++..+.+.+.. +..+..|+..=+=.++..+.. ...+...|..++.++|.|++.+
T Consensus 528 l~d~~~~v---~-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 528 VGDPFYKI---T-SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HTCSSHHH---H-HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC---SSSCHHHHHHHHHHHHHHHHHT
T ss_pred HcccchHH---H-HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHh
Confidence 23322110 0 0112234333333322 234555554333233333421 2234567888999999999999
Q ss_pred ccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 000149 531 GSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKIL 610 (2037)
Q Consensus 531 g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il 610 (2037)
|+.+....|+++..|...+..+.-|..+++++....... .+.++.+++..++..+...+... ....+..+...+
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~~~---~~~~r~~a~~al 674 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLRKN---QRALKLGTLSAL 674 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTTSC---CHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 999999999999999999988777777777777665532 23467888999998888877532 334577788888
Q ss_pred HHHHHHhH-----HHHHhhcccCCCC
Q 000149 611 EDLVLKNR-----AILKQHIHEFPLL 631 (2037)
Q Consensus 611 ~~Li~~n~-----~~L~~~i~~lp~L 631 (2037)
..++..+. +.+...+..+.++
T Consensus 675 ~~l~~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 675 DILIKNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp HHHHHHCCTTCCHHHHHHHHTTCGGG
T ss_pred HHHHhcccccCCHHHHHHHHHHHHhh
Confidence 88877653 4454555555444
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.79 E-value=3.1e-06 Score=115.74 Aligned_cols=545 Identities=12% Similarity=0.169 Sum_probs=297.4
Q ss_pred hhcccchhhhhhhhhhchhhhhhhcCcc---chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccc-cccc
Q 000149 11 LALRDEFDEVRAEAVISLPVIVMWSGLG---VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW-DKNA 86 (2037)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (2037)
-+++|+..+||..|+-.+--++-..+.. .+..+.+.|-.+..++...|++.....||.++=.++.. ..+ -.+-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~l~~l 257 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR---LLPHMHNI 257 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH---HGGGHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 4678899999999998886555432211 12344455555566777889998888888776544311 000 0111
Q ss_pred cccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc---------
Q 000149 87 CKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY--------- 157 (2037)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 157 (2037)
...+++.... ....+...--.||...|+.....+ . ..--...+-+.+++.+.
T Consensus 258 ~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~------~------------~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 258 VEYMLQRTQD-QDENVALEACEFWLTLAEQPICKD------V------------LVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHH------H------------HTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHH------H------------HHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 2222222111 112233333345666665432111 0 01123344455555552
Q ss_pred -cc-----------CccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000149 158 -DE-----------SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2037)
Q Consensus 158 -~~-----------~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2037)
++ .+..|+.+....|.++..+...++. . ..+..+..++.|++-.+|++++.++..+.+...
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~-~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--- 391 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL-P---HILPLLKELLFHHEWVVKESGILVLGAIAEGCM--- 391 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGH-H---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHH-H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---
Confidence 11 3446788888888888877654432 2 244455556689999999999999999762211
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
.........++..+...+.+ .++.|..+...++|+++.... .....+.-.+-.|++.|..+++.+|..|..
T Consensus 392 ------~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 392 ------QGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp ------HHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00111224566666665543 568899999999999865332 123445556667899999899999999999
Q ss_pred HHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHH------HHHHHHHHhCCC--hHHHHHhhcccccchh
Q 000149 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIM------VREFAEAAFGVE--TEELVKKMIPAVLPKL 373 (2037)
Q Consensus 304 ~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~------~~~~~e~ll~~~--~~~fL~~~~~~~LP~L 373 (2037)
-|.++|+..... +.++. +.+.+.+.+-+.. +..+ +..+++ ..|-. ..+++. .++|.|
T Consensus 465 aL~~l~~~~~~~----l~~~l----~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~-~~~~~~~~~~~~~----~l~p~l 531 (852)
T 4fdd_A 465 AFATLEEEACTE----LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQ----MLMPPL 531 (852)
T ss_dssp HHHHHHHHHGGG----GGGGH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHGGGGCCHHHHH----HHHHHH
T ss_pred HHHHHHHHhhHh----hHhHH----HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HhhhhhccHHHHH----HHHHHH
Confidence 999999876542 23343 3444444443332 1111 122222 12211 133444 345555
Q ss_pred hh----ccccChh---HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHHHHHH--
Q 000149 374 VV----SQQDNDQ---AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLSALEF-- 428 (2037)
Q Consensus 374 Vl----~~~~~~~---~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~~l~~-- 428 (2037)
+- .+..+.. +.+.+..|++.++....+.+..-++.++..+-.. ++++....++..
T Consensus 532 ~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~ 611 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611 (852)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHH
Confidence 41 1111211 3466677888877766555444344333332110 123333323332
Q ss_pred -HHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhh
Q 000149 429 -YCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM 507 (2037)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l 507 (2037)
+....+.+....+.+ +.++.-++-.+.+.+.+. ++. ....+..+++.. +..+..|+. .++..+...+
T Consensus 612 ~l~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~~v-r~~---a~~~l~~l~~~~--~~~~~~~l~----~~lp~l~~~l 679 (852)
T 4fdd_A 612 GLAEGLGGNIEQLVAR--SNILTLMYQCMQDKMPEV-RQS---SFALLGDLTKAC--FQHVKPCIA----DFMPILGTNL 679 (852)
T ss_dssp HHHHHHGGGGHHHHHT--CCHHHHHHHHTTCSSHHH-HHH---HHHHHHHHHHHC--GGGTGGGHH----HHHHHHHHTC
T ss_pred HHHHHHhHhHHHHhcC--CcHHHHHHHHhCCCChhH-HHH---HHHHHHHHHHHh--hHHHHHHHH----HHHHHHHHHc
Confidence 333334333333310 122221222233322221 111 122333333221 223444443 3444443333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAA 587 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~ 587 (2037)
+.++.+.++.++.++|++.+.+|..+.++.+.|+..|..-|+.++.+......=...+-.|...+|+.+.|++++++..
T Consensus 680 -~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 680 -NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHH
Confidence 3345677889999999999999999999999999999998887776554443222333333334677788999998888
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000149 588 LIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2037)
Q Consensus 588 lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2037)
+...+..-.+. ..+..|.+-|-.||..|..
T Consensus 759 ~~~~l~~~~d~--~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 759 WCTSLRNIRDN--EEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHTSCSS--HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhcccccc--HHHHHHHHHHHHHHHhChH
Confidence 76666432222 2357788888888888775
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=8.3e-06 Score=99.71 Aligned_cols=369 Identities=13% Similarity=0.106 Sum_probs=215.0
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hhH
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQD 1119 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~~ 1119 (2037)
+|...++.|.|..|+.+++..++..+. ....+..|..+|...++.|...-.... ...+. ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 577889999999999999987765321 124567889999999999988777642 22222 223
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|++++|..+|+++++..|++.+...++-.|+...|+++......+......|+...-+. ....+....|++
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~ 151 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS-DLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-HHHHHHHTTSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHccCH
Confidence 4567889999999999999999999999988889999999999999887777766555554332222 233456678999
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+.-.+++...-.. .+........+|.++ ...++..+..+..+++-. +.+...+.|...-... ..
T Consensus 152 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~---~~ 215 (388)
T 1w3b_A 152 EEAKACYLKAIET------QPNFAVAWSNLGCVF--NAQGEIWLAIHHFEKAVT-----LDPNFLDAYINLGNVL---KE 215 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HTTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHH---HH
Confidence 8887766544221 011122333444433 334555444444333321 1111111111100111 11
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHh--hhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRL--KYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL--~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
..+.++......... . ..+.... .|...- -.-...+ .+-+-.+++++ . ..+.....|...+.
T Consensus 216 ~~~~~~A~~~~~~al--~--~~p~~~~------~~~~l~~~~~~~g~~--~~A~~~~~~al-~---~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 216 ARIFDRAVAAYLRAL--S--LSPNHAV------VHGNLACVYYEQGLI--DLAIDTYRRAI-E---LQPHFPDAYCNLAN 279 (388)
T ss_dssp TTCTTHHHHHHHHHH--H--HCTTCHH------HHHHHHHHHHHTTCH--HHHHHHHHHHH-H---TCSSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--h--hCcCCHH------HHHHHHHHHHHcCCH--HHHHHHHHHHH-h---hCCCCHHHHHHHHH
Confidence 111112111111000 0 0000000 011000 0001111 11111222221 1 12233557888888
Q ss_pred HHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+..+.|+++.|...+.++....+ +.+....+.++...|+.++|+..++++++..| .
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~--- 337 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------E--- 337 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------------------T---
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------C---
Confidence 88888888888888887766643 34555677788888888888888887764211 0
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
.+.++..+|.-+...|+ .+++.+.|+++++++|+...+|+.+|..+
T Consensus 338 --------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 338 --------------FAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp --------------CHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 13345556666555554 67888888888888888888888888754
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.73 E-value=1.8e-05 Score=112.58 Aligned_cols=691 Identities=13% Similarity=0.161 Sum_probs=330.8
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHH-hhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRL-ESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
..+--.|.|+...||..|+.++..++...+...+..+...| ..+..+....+++.....+|.++-..|.. ....-..
T Consensus 178 ~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~ 255 (1230)
T 1u6g_C 178 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEK 255 (1230)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HHHHHHH
Confidence 34445678888899999999999999888765544422222 23333222356666666666665444421 1111111
Q ss_pred cccccccccccccc---ccHHhhhhcccccccCCccccc-ccccccccC----CCccc---ccc----cc---cCCChhh
Q 000149 86 ACKLLLNVEDDILS---QTVDYLLENFWCSKCDTNVVHN-QELSSKIVN----PSDVQ---SKD----LN---FHSDFSF 147 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~----~~~~~---~~~----~~---~~~~~~~ 147 (2037)
-...++..-+...+ ......+ +++|..|...+... .+.-..++. -+... +.+ .+ .+-+...
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l-~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAF-ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHH-HHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 22222222111111 1111122 34455565432110 000000000 00000 000 00 0000000
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
...-| . .-+..+.+|+-+....|..+..... +........-+..+...+.|++..||.++..++..++.......
T Consensus 335 ~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-- 409 (1230)
T 1u6g_C 335 SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ-- 409 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccc-c-cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 00000 0 0123456788899999999887543 21111111112333334478999999999999988774321100
Q ss_pred ccccccc------------chhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHHhCC
Q 000149 228 LDENASS------------RSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS---QHFLFLLILLVEQLDN 292 (2037)
Q Consensus 228 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~---e~~~~~l~~Li~~L~~ 292 (2037)
...++.. ......++..+.+.+. .+++.+++.++..+++++... .+ ..+...+-.++..|..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~--~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 410 SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp -----------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTC
T ss_pred ccccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc--hhhhHHHHHHHHHHHHHHHcC
Confidence 0000000 0011223333444343 456779999999999986642 22 2344455568888888
Q ss_pred CCc--chHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchH--------HHHHHHHHHhCC------
Q 000149 293 PHV--TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPI--------MVREFAEAAFGV------ 356 (2037)
Q Consensus 293 ~n~--~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~--------~~~~~~e~ll~~------ 356 (2037)
+++ -++..|...+..+++.+... .+.++. +.+.+.+.+.+..+-. .+.++++ .+|-
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~---~~~~~l----~~llp~L~~~l~d~~~~v~~~al~~l~~l~~-~~~~~~~~~~ 558 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQ---VFHPHV----QALVPPVVACVGDPFYKITSEALLVTQQLVK-VIRPLDQPSS 558 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGG---GGHHHH----TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCCSSSCCC
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHH---HHHhHH----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HhcCcccccc
Confidence 875 78888888888887655332 222333 4566666665554433 1334443 4454
Q ss_pred -ChHHHHHhhcccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccc-cHHHHHHHHH
Q 000149 357 -ETEELVKKMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQA-DERRLLSALE 427 (2037)
Q Consensus 357 -~~~~fL~~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~-~~~~~~~~l~ 427 (2037)
....++..+.+..+++|-.. ..+.. +...+..++...+..+.+ .++.++..|. ..+ .......++.
T Consensus 559 ~~~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~~~~~----~~~~~l~~L~~~l~~e~~r~~~~~al~ 633 (1230)
T 1u6g_C 559 FDATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLGS----DLPNTLQIFLERLKNEITRLTTVKALT 633 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCCT----HHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCchhhh----hHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 44566666666666665311 12222 235677777776666543 4455554443 222 2344556666
Q ss_pred HHHhhc-CCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 428 FYCIQT-GSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 428 ~~~~~~-~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
.+.... ..+....+..++|.+.. .+...+. .. |. ....++..+..... .... .+++..++..+- .
T Consensus 634 ~i~~~~~~~~~~~~~~~i~~~L~~----~l~~~~~--~~-r~-~a~~al~~l~~~~~-~~~~----~~~v~~~l~~ll-~ 699 (1230)
T 1u6g_C 634 LIAGSPLKIDLRPVLGEGVPILAS----FLRKNQR--AL-KL-GTLSALDILIKNYS-DSLT----AAMIDAVLDELP-P 699 (1230)
T ss_dssp HHTTCSSCCCCHHHHHHHHHHHHH----HTTSCCH--HH-HH-HHHHHHHHHHHHCC-TTCC----HHHHHHHHTTCG-G
T ss_pred HHHhCccccchHHHHHHHHHHHHH----HHHhCCH--HH-HH-HHHHHHHHHHhccc-ccCC----HHHHHHHHHHHH-h
Confidence 554321 23445555555555443 3333322 21 11 12344444443322 1112 344444443321 2
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC--cchhhHHHHH
Q 000149 507 MLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP--SSTKHVISQV 584 (2037)
Q Consensus 507 l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~--~~l~~ll~~i 584 (2037)
+++..|..+...++..+..|++..++.+....+.++..+...+..+.++..++.+-..+++.+...++ ..+..++..
T Consensus 700 ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~- 778 (1230)
T 1u6g_C 700 LISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRM- 778 (1230)
T ss_dssp GSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHH-
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH-
Confidence 23446777888899999999987776554444454444444444444555555554445555433222 234444443
Q ss_pred HHHhhhhcccCCC--CchhhHHHHHHHHHHHHHHhH----HHHHhhcccCCCCC-CchhhHHHH-HHHHHh--cCCCC-H
Q 000149 585 FAALIPFLERDKD--NPSVLLNKVVKILEDLVLKNR----AILKQHIHEFPLLP-SIAALTEVN-KAIQEA--RGPMT-L 653 (2037)
Q Consensus 585 ~~~lip~~~~~~~--~~~~~~~~~~~il~~Li~~n~----~~L~~~i~~lp~Lp-~ip~L~~v~-~~l~~~--r~~~~-l 653 (2037)
+..-+..... ........+...+..++.... ..+..++..+-. | ..+...... ..+.+. +..+. .
T Consensus 779 ---l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~ 854 (1230)
T 1u6g_C 779 ---LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRLLALLSLGEVGHHIDLSGQ 854 (1230)
T ss_dssp ---HSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTT-TTCCHHHHHHHHHHHHHHHHHSCCCSC
T ss_pred ---HhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCC-CCccHHHHHHHHHHHHHhcccCCCccc
Confidence 3222211000 011123445566666665432 334444433321 1 111111111 111221 11122 2
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHH----H------------------HHHhccCC-CCchhHHHHHH
Q 000149 654 KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDV----T------------------ALINGEAC-SDLDVLSTLIS 710 (2037)
Q Consensus 654 ~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l----~------------------~~~~~e~~-~~~~vi~~Lv~ 710 (2037)
.+.+..|.+.+++.+..||..|...|..+...+-+.+ . ..+..... .-.+.+.++..
T Consensus 855 ~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~ 934 (1230)
T 1u6g_C 855 LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWA 934 (1230)
T ss_dssp THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHH
Confidence 3456788899999999999988777777655442211 1 11111111 11245566666
Q ss_pred HHHHHhhhhccccchhhHHHHHHHhhcccCccCcc
Q 000149 711 SLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPA 745 (2037)
Q Consensus 711 sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2037)
.|++.+.+. ++.++..+|+|||.|...||.
T Consensus 935 ~L~~~~~~~-----~~~~r~~~a~~lg~l~~~~~~ 964 (1230)
T 1u6g_C 935 LLLKHCECA-----EEGTRNVVAECLGKLTLIDPE 964 (1230)
T ss_dssp HHTTCCCCS-----STTHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHhcCc-----chhhHHHHHHHHhhhhccChH
Confidence 666655432 246888999999999999883
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.70 E-value=3.9e-05 Score=104.44 Aligned_cols=472 Identities=12% Similarity=0.084 Sum_probs=258.1
Q ss_pred hhHHHHHHHhhcc------cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 146 SFLLNIYFEFLYD------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 146 ~~~~~~~~~~l~~------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
.++-+.+++.|-. +.+.+++.++...|..+..+...++ +. ..+..+...+.|++..+|.+++..+..+.+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HH---HHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 3445556666643 2345788888888888877765433 22 233444555689999999999999988652
Q ss_pred hhhhhhhccccc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHHhCCCCc
Q 000149 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2037)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2037)
+.. ..-......++..+...+.. .++.|+++.+.++++++..... ..+.+...+-.|+..|.++ +
T Consensus 396 ---------~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 396 ---------GPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 110 00001113355555555543 4578999999999999654322 2356666777788888775 8
Q ss_pred chHHHHHHHHHHHHhhhh-------cc---CcccccchhhhhhhhhhHHHHHhhcCc----hH----HH---HHHHHHHh
Q 000149 296 TVRMNASRLIRKSCFFHL-------KG---GCELLVSKAVLICNELFDYLSVRLASR----PI----MV---REFAEAAF 354 (2037)
Q Consensus 296 ~~~~~a~~~i~~la~~~~-------~~---~~~l~~~~~~~~~~~l~~~~~~~l~~~----p~----~~---~~~~e~ll 354 (2037)
.++..|..-|..++.... +. ..+.+.++. +.+.+.+.+-+... +. .. ..++. ..
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~-~~ 539 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF----ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK-NS 539 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH----HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH-HC
Confidence 899999999999887754 10 112233444 34445555444321 11 12 22332 33
Q ss_pred CCChHHHHHhhcccccchhhhc--------cccChh--------HHHHHHHHHHHcC-CCchhHHhhhHHHHHHHHh---
Q 000149 355 GVETEELVKKMIPAVLPKLVVS--------QQDNDQ--------AVNIINELAKCLN-TDMVPLIVTWIPKVLAFAL--- 414 (2037)
Q Consensus 355 ~~~~~~fL~~~~~~~LP~LVl~--------~~~~~~--------~~~~i~~ia~~~~-~~~~~l~~~~~~~Ila~ll--- 414 (2037)
|-....++..+.+.++..+-.. ...|.. +...+..+++.++ ..+.+ +++.|+..++
T Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~l~~~l~~~l 615 (876)
T 1qgr_A 540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ----ISDVVMASLLRMF 615 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT----THHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH----HHHHHHHHHHHHH
Confidence 4444445555544444333321 111111 1234455555444 33433 3444444433
Q ss_pred -ccc----cHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChh
Q 000149 415 -HQA----DERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP 489 (2037)
Q Consensus 415 -~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (2037)
... ..+.+..++..+....+......+...+|.++ ..+...+..+.+. + ...++..+.+... +.+
T Consensus 616 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~vr~--~-a~~~l~~l~~~~~--~~~- 685 (876)
T 1qgr_A 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG----IGLKNYAEYQVCL--A-AVGLVGDLCRALQ--SNI- 685 (876)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH----HHHHHCTTHHHHH--H-HHHHHHHHHHHHG--GGG-
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHcCcchHHHHH--H-HHHHHHHHHHHHH--Hhh-
Confidence 221 13445555555544444333222333333333 2333322222211 1 2233333332221 223
Q ss_pred hhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-------------Ccc
Q 000149 490 GFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQ 555 (2037)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~-------------~L~ 555 (2037)
.+++-.++..+-..+.+. .+...|..++.++|.+++.+|+....++|.|+-.|..++..+ .++
T Consensus 686 ---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 686 ---IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 334444444433333222 234577889999999999999999899999999999888633 577
Q ss_pred hhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHH-HHHhhcccC
Q 000149 556 CEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA-ILKQHIHEF 628 (2037)
Q Consensus 556 ~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~-~L~~~i~~l 628 (2037)
...+.+|..++..+.... ...+.+++..++..+....... ......++.|...|..|+..-.. .+..++
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--- 838 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDE-DHTDGVVACAAGLIGDLCTAFGKDVLKLVE--- 838 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHCTHHHHHHH---
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCcHHHHHHH---
Confidence 788999999999876421 2467888888876665544321 10235677888888877654322 222111
Q ss_pred CCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHh-hccCCChhHHHHHHHHHHHH
Q 000149 629 PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD-GLNHENLNVRYMVVCELSKL 682 (2037)
Q Consensus 629 p~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~-rl~~en~~Vr~~aL~eL~~~ 682 (2037)
. ...+..+++ .+.+.+..||..|...+..+
T Consensus 839 -------------------~-----~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 839 -------------------A-----RPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp -------------------T-----SHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred -------------------h-----cHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 0 012334444 55677888887776666554
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.68 E-value=1.4e-05 Score=108.62 Aligned_cols=436 Identities=14% Similarity=0.110 Sum_probs=251.2
Q ss_pred hhHHHHHHHhhcccC------ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 146 SFLLNIYFEFLYDES------SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 146 ~~~~~~~~~~l~~~~------~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
..+-+.+++.|-+.. +..++.++...|.++..+...++. ......+...+.+++-.+|++++..+..+.+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 345555666665422 235778888888888877664432 2344455556689999999999999988651
Q ss_pred hhhhhhhccccc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHHhCCCCc
Q 000149 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2037)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2037)
+.. .........++..+...+.. .++.+.++.+.++|+++..... ..+.+.-.+-.|+..|+.+ +
T Consensus 399 ---------~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~ 467 (861)
T 2bpt_A 399 ---------GPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P 467 (861)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h
Confidence 110 00011113456666665544 4788999999999998654321 2445666666788888775 8
Q ss_pred chHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC---chHHH-------HHHHHHHhCCChHHHHHhh
Q 000149 296 TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPIMV-------REFAEAAFGVETEELVKKM 365 (2037)
Q Consensus 296 ~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---~p~~~-------~~~~e~ll~~~~~~fL~~~ 365 (2037)
-+|..|..-+.++++......-+.+.++. +.+.+.+.+.+.+ .|.+- ..+++ ..|-....++..+
T Consensus 468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~-~~~~~~~~~~~~l 542 (861)
T 2bpt_A 468 KVATNCSWTIINLVEQLAEATPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTTMVE-YATDTVAETSASI 542 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH-HCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHH----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH-HcchhhHHHHHHH
Confidence 89999999998888775410011233333 3555555555542 13321 12222 2332333344444
Q ss_pred cccccchhhhc--------c----ccC----hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc---cHHHHHHHH
Q 000149 366 IPAVLPKLVVS--------Q----QDN----DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA---DERRLLSAL 426 (2037)
Q Consensus 366 ~~~~LP~LVl~--------~----~~~----~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~---~~~~~~~~l 426 (2037)
.|.++..|--. . ... ..+..++..|++..+..+.+.+..-++.++..+=... ..+.+..++
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l 622 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence 34333333211 0 000 0234667777777776665555444444443332221 234455555
Q ss_pred HHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 427 EFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
..+....+.+....+...+|.++. .+...+.+ . +.. ....+..+.+... +. +.+++-.++..+-..
T Consensus 623 ~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~~~~-v-r~~--a~~~l~~l~~~~~--~~----~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 623 SALAASLGKGFEKYLETFSPYLLK----ALNQVDSP-V-SIT--AVGFIADISNSLE--ED----FRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHH----HHHCTTSH-H-HHH--HHHHHHHHHHHTG--GG----GHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HhccccHH-H-HHH--HHHHHHHHHHHhc--hh----ccchHHHHHHHHHHH
Confidence 555544444444444444454443 22332222 1 111 2233333333321 22 344444444443333
Q ss_pred hcCC-CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccC
Q 000149 507 MLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRV 572 (2037)
Q Consensus 507 l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~-------------~L~~~~l~~W~~fv~~L~~~ 572 (2037)
+.++ .+...|..++.+++.+++.+|+.+..+.++|+-.|..+++.. .++..++++|..++..+.+.
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3333 235678899999999999999999999999999998888632 36788999999999988642
Q ss_pred CCcchhhHHHHHHHHhhhhcccCC-CCchhhHHHHHHHHHHHHHH
Q 000149 573 SPSSTKHVISQVFAALIPFLERDK-DNPSVLLNKVVKILEDLVLK 616 (2037)
Q Consensus 573 ~~~~l~~ll~~i~~~lip~~~~~~-~~~~~~~~~~~~il~~Li~~ 616 (2037)
+..+.+++..++..+........ +....++..|...+..|...
T Consensus 769 -~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 769 -PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 45688888888888877764210 00234677788888877553
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.62 E-value=7.9e-05 Score=88.48 Aligned_cols=325 Identities=13% Similarity=0.021 Sum_probs=193.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....+-|.|..|+-+++..+... | +.++...+. ...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p-----------------------~~~~~~~~~------------a~~~ 47 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD-----P-----------------------DNYIAYYRR------------ATVF 47 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 57888889999999999999877642 1 011222222 2234
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch---hhhhhHhHHH-----------H
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP---QYKKTWCMQG-----------V 1190 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p---~~~~~l~~~~-----------~ 1190 (2037)
...|+|++|..+|+++++..|++......+-.|+...|+++......+......| .....+..++ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888777777777777777777778887777666665555555 3333332222 4
Q ss_pred HHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhh
Q 000149 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2037)
Q Consensus 1191 EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~ 1270 (2037)
.+....|+|+...+++...-.. .+........+|.+ .+..++..+..+.++.+.. +.+ ... ..
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~~-----~~~---~~~-~~ 190 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEV------CVWDAELRELRAEC--FIKEGEPRKAISDLKAASK-----LKS---DNT-EA 190 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHT-----TCS---CCH-HH
T ss_pred HHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHH--HHHCCCHHHHHHHHHHHHH-----hCC---CCH-HH
Confidence 6777889998887776654321 01122233334433 3445665554444433321 111 111 11
Q ss_pred hHHHH-HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhH
Q 000149 1271 YPFIV-KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2037)
Q Consensus 1271 y~~l~-kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~ 1349 (2037)
+-.+- -+....+.+++...+ +.=+..-.++...+..+-.+. ..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~------------------------~~a~~~~~~~~~~~~~~~~~~------------~~ 234 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 234 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHhhCccchHHHHHHHHHH------------HH
Confidence 11111 111122222222222 111111111211111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...+..|.+..+.|.++.|...+.++....+.+ +....|.++...|+..+|+..++.+++..|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP----------- 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----------
Confidence 334566888999999999999999987765443 234578999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
. .+.++..+|..+...|+ .+++...|+++++++|+...++..+++-+..+
T Consensus 304 --------~-----------------~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 304 --------D-----------------NVNALKDRAEAYLIEEM--YDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred --------c-----------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 0 13467777877777665 88999999999999999999998887765443
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.53 E-value=0.00019 Score=97.77 Aligned_cols=563 Identities=13% Similarity=0.110 Sum_probs=293.4
Q ss_pred ChhhHHHHHHHhhccc-CccchhHHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-
Q 000149 144 DFSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD- 220 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~- 220 (2037)
.+..+-+.+.+.|-++ ++.+|+.+++.+|..++.+...+..... +...+..+..++.+++..||.+++..+..+++.
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556666677777665 4789999999999999877443321111 111233334445788889999998888776521
Q ss_pred ----------hhhhhhccc---cccccchhh----------------------------------------HHHHHHHHH
Q 000149 221 ----------TVLSSLFLD---ENASSRSNE----------------------------------------LKLLDVIKL 247 (2037)
Q Consensus 221 ----------~~~~~~~~~---~~~~~~~~~----------------------------------------~~~~~~~~~ 247 (2037)
.++..++.. .+...+..- ..++..+..
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 222222211 110100000 111222222
Q ss_pred Hhhh------cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCccccc
Q 000149 248 AFTA------ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2037)
Q Consensus 248 ~~~~------~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~ 321 (2037)
.+.. -++..+......+++.+.... +.+.+..++-.+...|.+++.-+|-.|..-+-.++..... +.+.
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHH
Confidence 2221 123557777777777774433 4566665666678888999999999999988888654321 0111
Q ss_pred chhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhh---------cccccchhhhccccCh----hHHHHHH
Q 000149 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------IPAVLPKLVVSQQDND----QAVNIIN 388 (2037)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~---------~~~~LP~LVl~~~~~~----~~~~~i~ 388 (2037)
++. +.+.+.+++.+...-..++.-|...+| .|.... .+.++|.|+-.-+.+. .+...|.
T Consensus 404 ~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~----~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 404 PLV----IQAMPTLIELMKDPSVVVRDTAAWTVG----RICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HHH----HHHHHHHHHHHTCSSHHHHHHHHHHHH----HHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 455566666665332333333322222 222221 1223344432211111 1234555
Q ss_pred HHHHHcC-------CC---chhHHhhhHHHHHHHHhc---cc------cHHHHHHHHHHHHhhcCCChHHHHHhhhHHHH
Q 000149 389 ELAKCLN-------TD---MVPLIVTWIPKVLAFALH---QA------DERRLLSALEFYCIQTGSDNQEIFAAALPALL 449 (2037)
Q Consensus 389 ~ia~~~~-------~~---~~~l~~~~~~~Ila~ll~---~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 449 (2037)
.++...+ .. -...+..+++.|+..|+. .. ....+.++|..+....+.+....+...+|.++
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 5555433 00 011233455555555542 11 12346677776666666666666666666666
Q ss_pred HHHHHhh--cC---CCchHH--hhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHH-HHhhhhhcCCCC-hHHHHHHH
Q 000149 450 DELICFV--DG---GDSDEI--NERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLL-NSIDRKMLHAED-LSLQKQAL 520 (2037)
Q Consensus 450 ~ell~~~--~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil-~~~~~~l~~~~~-~~~k~~~l 520 (2037)
..|--.+ .. ++.|.. ......+...+..+.+.+ +.+.+..|+. .++..+ ..++ +..+ ...+..++
T Consensus 556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~-~l~~~l~~~l~----~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV-QHQDALQISD-VVMASLLRMFQ----STAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHTTHH-HHHHHHHHHC---------CCHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh-ChhhhhHHHH-HHHHHHHHHHH----hccCCCCccHHHH
Confidence 4442211 00 122211 000011223333333221 1123444442 222222 2222 1111 24577899
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCC
Q 000149 521 KRIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKD 597 (2037)
Q Consensus 521 ~sl~~li~l~g~~v~~~~pqI~a~L~saL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~ 597 (2037)
..++.+++-+|....++.++++-.|...|. .++++..++.+...+++.+. ..+.+++..++..++..+....
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~- 704 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLLLENLGNEN- 704 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHhCCcc-
Confidence 999999999999888888888888887775 45678889999999998875 3688889999999998886421
Q ss_pred CchhhHHHHHHHHHHHHHHhHHHHHhhcccC-------CCCC---CchhhH----HHH--------HHHHHhcCC-----
Q 000149 598 NPSVLLNKVVKILEDLVLKNRAILKQHIHEF-------PLLP---SIAALT----EVN--------KAIQEARGP----- 650 (2037)
Q Consensus 598 ~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-------p~Lp---~ip~L~----~v~--------~~l~~~r~~----- 650 (2037)
.....+..+...+..+....+..+..++..+ ...+ +-++.. .++ ..++...+.
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 1123466677777777654322222221111 0000 011111 111 111222221
Q ss_pred ------CCHHHHHHHHHhhc-cCC--ChhHHHHHHHHHHHHHhhcHH-HHHHHHhccCCCCchhHHHHHHHHHH-Hhhhh
Q 000149 651 ------MTLKDQLLAAVDGL-NHE--NLNVRYMVVCELSKLLKLKSE-DVTALINGEACSDLDVLSTLISSLLR-GCAEE 719 (2037)
Q Consensus 651 ------~~l~~~l~~~~~rl-~~e--n~~Vr~~aL~eL~~~L~~~~~-~l~~~~~~e~~~~~~vi~~Lv~sLL~-~c~~~ 719 (2037)
.+....+-.|+..+ .++ +..||..|+.-|..+...-.. .+...+ ...++..|+. ++.+.
T Consensus 785 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~----------~~~~i~~ll~~~l~~~ 854 (876)
T 1qgr_A 785 PDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE----------ARPMIHELLTEGRRSK 854 (876)
T ss_dssp GGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH----------TSHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH----------hcHHHHHHHHHHhhcC
Confidence 11223444555444 555 678999898888877654422 222211 1244555555 33322
Q ss_pred ccccchhhHHHHHHHhhcccCccCcc
Q 000149 720 SRTVVGQKLKLVCADCLGALGAVDPA 745 (2037)
Q Consensus 720 ~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2037)
+++++..++.++|.|.-+||+
T Consensus 855 -----~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 855 -----TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTC
T ss_pred -----CHhHHHHHHHHHHHHHHhhcC
Confidence 368999999999999877764
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.53 E-value=0.0011 Score=85.80 Aligned_cols=555 Identities=14% Similarity=0.133 Sum_probs=286.8
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2037)
...+-..|.++..++|..|+..+.-++..-||.. ...+...|.... +..+.|++.++..||-+....|..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-------- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--------
Confidence 3455567899999999999999988887767642 122333333222 334456666555555332211100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000149 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2037)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2037)
.. ...+-+++..+ ....+.+|
T Consensus 83 --------------------------------~~--------------------------~~~ll~~L~~l-~~~~~~~v 103 (588)
T 1b3u_A 83 --------------------------------EY--------------------------VHCLLPPLESL-ATVEETVV 103 (588)
T ss_dssp --------------------------------GG--------------------------GGGGHHHHHHH-TTSSCHHH
T ss_pred --------------------------------HH--------------------------HHHHHHHHHHH-HhCchHHH
Confidence 00 01133434443 34456789
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
+-+.+..|..+..+.+.+..... ...-+..+..+++..+|.+++..+..+... .+ ......++..
T Consensus 104 R~~a~~~L~~l~~~~~~~~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~---------~~---~~~~~~l~~~ 168 (588)
T 1b3u_A 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------VS---SAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---------SC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---------cC---HHHHHHHHHH
Confidence 99999999999998775422122 233344455788899999999888875411 11 1123444544
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccch
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~ 323 (2037)
+... ..-+|+.|....+.++|.++.. .+.+.. ...+-.|+..+..++..+|..|..-+..++......
T Consensus 169 l~~l-~~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------- 237 (588)
T 1b3u_A 169 FRNL-CSDDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------- 237 (588)
T ss_dssp HHHH-HTCSCHHHHHHHHHHHHHHHHT--SCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--------
T ss_pred HHHH-hCCCCHHHHHHHHHHHHHHHHH--hcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--------
Confidence 4443 3446788999999999998543 244332 222334667778889999999999988887654221
Q ss_pred hhhhhhhhhHHHHHhhcCch-HHHHHHHHHHhCCChHHHHHh-----hcccccchhhhcc-ccChhH----HHHHHHHHH
Q 000149 324 AVLICNELFDYLSVRLASRP-IMVREFAEAAFGVETEELVKK-----MIPAVLPKLVVSQ-QDNDQA----VNIINELAK 392 (2037)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~~p-~~~~~~~e~ll~~~~~~fL~~-----~~~~~LP~LVl~~-~~~~~~----~~~i~~ia~ 392 (2037)
...+.+.+.+. .+...| ..++..|-..+| .+... ..+.++|.|+-.- ..+..+ ...+..++.
T Consensus 238 --~~~~~~~~~l~-~~~~d~~~~vR~~a~~~l~----~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 238 --DLEALVMPTLR-QAAEDKSWRVRYMVADKFT----ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp --HHHHHTHHHHH-HHHTCSSHHHHHHHHHTHH----HHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHH-HHccCCCHHHHHHHHHHHH----HHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 01122333333 333322 223332221222 11111 1234566665432 222222 244555555
Q ss_pred HcCCCch--hHHhhhHHHHHHHHhccccH---HHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhh
Q 000149 393 CLNTDMV--PLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINER 467 (2037)
Q Consensus 393 ~~~~~~~--~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~ 467 (2037)
..+.... +.+..-+|.+.. ++..++. ..+..+|..+....+. .......+|.++ . .+.+.+.+ .+.
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~-~---~l~d~~~~--Vr~ 381 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKE-LVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL-A---QLKDECPE--VRL 381 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHH-HHTCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHH-H---HHTCSCHH--HHH
T ss_pred HhChhhhhhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHH-H---HhCCCchH--HHH
Confidence 5444321 111112222222 2222222 2233333333322221 111223334433 2 33333322 111
Q ss_pred hcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 000149 468 LNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMH 547 (2037)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~s 547 (2037)
. +..++..+.+.. +. ..+.+.++..+..+ ...++...|..++..|+.+.+.+|+. .+.|+++..|..
T Consensus 382 ~--a~~~l~~l~~~~-~~----~~~~~~~lp~l~~~----~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ 448 (588)
T 1b3u_A 382 N--IISNLDCVNEVI-GI----RQLSQSLLPAIVEL----AEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMA 448 (588)
T ss_dssp H--HHTTCHHHHHHS-CH----HHHHHHHHHHHHHH----HTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHH
T ss_pred H--HHHHHHHHHHhc-CH----HHHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHH
Confidence 1 112222222211 11 11223333333221 23345667788999999999999985 345788888888
Q ss_pred HhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhc
Q 000149 548 AINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHI 625 (2037)
Q Consensus 548 aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i 625 (2037)
.|.. ++.|..++.++..++..+.. + ..+..++..++.+.. +.....+..+...+..+.......
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~----- 514 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGK---E---WAHATIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQD----- 514 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCH---H---HHHHHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCc---h---hHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHH-----
Confidence 8864 35889999999999888642 1 123334444444333 222344556666665553321110
Q ss_pred ccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhH
Q 000149 626 HEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVL 705 (2037)
Q Consensus 626 ~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi 705 (2037)
. -...-+..+.+.++++++.||..++.-|..+...-..... -
T Consensus 515 ----------------~---------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-------------~ 556 (588)
T 1b3u_A 515 ----------------I---------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-------------Q 556 (588)
T ss_dssp ----------------H---------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-------------H
T ss_pred ----------------H---------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-------------H
Confidence 0 0123345566778888999999999999887754322110 0
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 706 STLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 706 ~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
..++..|.....+ .+.+++..+.++|+.|.
T Consensus 557 ~~~~p~l~~l~~d-----~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQD-----QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-----CchhHHHHHHHHHHHhh
Confidence 1222222222222 24689999999998764
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.51 E-value=0.00012 Score=94.50 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=100.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccC-------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL------- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~------- 1115 (2037)
..++.+..++|.|.+|+.+++....... ....+..|..+|...++.|....+... ....
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYNR-------------SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGGT-------------CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccc
Confidence 4689999999999999999987542210 134677899999999999998888652 1111
Q ss_pred --------------ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHH-------------------------
Q 000149 1116 --------------SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN------------------------- 1156 (2037)
Q Consensus 1116 --------------~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~------------------------- 1156 (2037)
.....+..|.+.|++++|..+|+++++..|++.+....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 12235567889999999999999999999987665433322
Q ss_pred -------------HHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1157 -------------CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1157 -------------CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
++.+.|+++......+.+... |.. .......+.+..+.|+++.-.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS-SDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 222345566555555444332 211 222334566778889998877776654
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.48 E-value=0.00021 Score=88.62 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=185.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....++|.|..|+.+++..+... |. ....+..+..+|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~-------~~~~~~~l~~~~---------------------------- 70 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-----PD-------NYIAYYRRATVF---------------------------- 70 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-------CHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc-------cHHHHHHHHHHH----------------------------
Confidence 57888899999999999999876532 10 112233344444
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh---hhHhH-----------HHH
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK---KTWCM-----------QGV 1190 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~---~~l~~-----------~~~ 1190 (2037)
...|++++|..+|+++++..|++......+-.|+..+|+++......+......|... ..+.. ...
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555555555566666666555555544443333221 11111 123
Q ss_pred HHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhh
Q 000149 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2037)
Q Consensus 1191 EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~ 1270 (2037)
.+....|+|+...+++...-.. .+........+|.+ ....++..+..+.++.+... .+.....+
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~--- 214 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAEC--FIKEGEPRKAISDLKAASKL-----KNDNTEAF--- 214 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH--HHHTTCGGGGHHHHHHHHHH-----HCSCHHHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHH--HHHCCCHHHHHHHHHHHHHh-----CCCCHHHH---
Confidence 4566788888877766554221 01122233334433 34566776665555544321 11101111
Q ss_pred hHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHH
Q 000149 1271 YPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2037)
Q Consensus 1271 y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~ 1350 (2037)
+....-+....+.+++...+. .=+....++...+..+-.++ ...
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~------------------------~~~~~~p~~~~~~~~~~~~~------------~~~ 258 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVR------------------------ECLKLDQDHKRCFAHYKQVK------------KLN 258 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------------HHHHhCCChHHHHHHHHHHH------------HHH
Confidence 111111111222222222221 11111111211111111111 123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.++..+..+.+.|.++.|...+.++....+.+ +....+.++...|+..+|+..++.++...|
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p------------ 326 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP------------ 326 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------------
Confidence 45677999999999999999999987765432 456678999999999999999999875211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
..+.++..+|..+...|+ .+++...|+++++++|+...+|..+|......
T Consensus 327 ------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 327 ------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ------------------------ccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 013466777777766665 88999999999999999999999998765443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.40 E-value=7.8e-05 Score=87.73 Aligned_cols=277 Identities=10% Similarity=0.052 Sum_probs=178.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC-C
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG-R 1198 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg-~ 1198 (2037)
.+..+...|+|++|...|+++++..|.+......+..|+..+|+++......+......|.....+. ....+....| +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 106 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF-AVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH-HHHHHHHHSCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhhhh
Confidence 4455667799999999999999999999888888899999999999988888777666665433333 3346778889 8
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
|+...+++...-.. .+........+|.++ ...++..+..+.++.+... .+.....+.. .-.-+.
T Consensus 107 ~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~---l~~~~~ 170 (330)
T 3hym_B 107 NEHARRYLSKATTL------EKTYGPAWIAYGHSF--AVESEHDQAMAAYFTAAQL-----MKGCHLPMLY---IGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHTT------CTTCTHHHHHHHHHH--HHHTCHHHHHHHHHHHHHH-----TTTCSHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHh------CCccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHh-----ccccHHHHHH---HHHHHH
Confidence 98777766554321 111223334455444 3445555444444333221 1110011000 000000
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++... ++ ++ +.. .+.....|...+.+
T Consensus 171 ~~~~~~~A~~~------------------------~~--------------------~a-l~~---~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 171 LTNNSKLAERF------------------------FS--------------------QA-LSI---APEDPFVMHEVGVV 202 (330)
T ss_dssp HTTCHHHHHHH------------------------HH--------------------HH-HTT---CTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHH------------------------HH--------------------HH-HHh---CCCChHHHHHHHHH
Confidence 11111111111 11 10 110 11225678999999
Q ss_pred HHHcCChHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1359 CRLAGHYETATRAILEAQAS-----------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~-----------~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..+.|+++.|...+.++... ..+.+....|.++...|+.++|+..++++++..+
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------- 267 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--------------- 267 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc---------------
Confidence 99999999999998887653 2245788899999999999999999999876311
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
. .+.++..+|......|+ .+++.+.|.++++++|....+|+.+|..+..
T Consensus 268 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 268 ----Q-----------------NASTYSAIGYIHSLMGN--FENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp ----T-----------------CSHHHHHHHHHHHHHTC--HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred ----c-----------------chHHHHHHHHHHHHhcc--HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 1 02356666776666665 7888999999999999999999999887643
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.39 E-value=0.00041 Score=82.24 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=190.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++......+......|.... .......+.+..|++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA-ARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHcCCh
Confidence 3456778999999999999999999999998889999999999999988888776665565433 233445678889999
Q ss_pred hhHHHHhhcccccCccccCCC-CCcchHHHHHH----------HHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHH
Q 000149 1200 DLMDEYLSGADEEGLLCSSSE-SNASFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYT 1268 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~-~~~~f~~~l~k----------aLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~ 1268 (2037)
+.-.+++...-... +.. ........++. +......++..+..+.++.+... .+
T Consensus 88 ~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------- 151 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-----CV------- 151 (359)
T ss_dssp HHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-------
T ss_pred HHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-------
Confidence 98877766543210 000 01111112221 11222233332222222211110 00
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchh
Q 000149 1269 RAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEV 1348 (2037)
Q Consensus 1269 r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~ 1348 (2037)
....... ...++-....++ .+-+-.++++ +.. .+..
T Consensus 152 ----------------------------------~~~~~~~----~~~~~~~~~~~~--~~A~~~~~~~-~~~---~~~~ 187 (359)
T 3ieg_A 152 ----------------------------------WDAELRE----LRAECFIKEGEP--RKAISDLKAA-SKL---KSDN 187 (359)
T ss_dssp ----------------------------------TCHHHHH----HHHHHHHHTTCH--HHHHHHHHHH-HTT---CSCC
T ss_pred ----------------------------------CchHHHH----HHHHHHHHCCCH--HHHHHHHHHH-HHh---CCCC
Confidence 0000000 000000000010 0111111111 111 1223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--------------HHHHHHHHHHcCCchHHHHHHHHHhhcCCcc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--------------HMEKAKLLWSTRRSDGAIAELQQNLLNKPVE 1414 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~--------------~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~ 1414 (2037)
...|...+.+..+.|.++.|...+.++....+... .+..|..+...|+..+|+..++.+++..+
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 265 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 265 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 56899999999999999999999999877654432 23458889999999999999999876321
Q ss_pred cccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000149 1415 VVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1415 ~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la 1494 (2037)
. .......++..+|......|+ .+++++.|.++++.+|....+|+.+|
T Consensus 266 -----------------~-------------~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 266 -----------------S-------------VAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp -----------------S-------------SHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------C-------------chHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 0 111335567777887777665 89999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1495 ~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..|...- -...|+..|-+++...+++
T Consensus 314 ~~~~~~g----------------------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 314 EAYLIEE----------------------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHcC----------------------CHHHHHHHHHHHHhcCCCC
Confidence 8764220 1236889999999887664
No 22
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.36 E-value=0.00071 Score=87.27 Aligned_cols=394 Identities=10% Similarity=0.036 Sum_probs=218.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC---hh
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---LQ 1118 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~---l~ 1118 (2037)
..++....+.|.|..|+.+++.-.... | ....+..|..+|...++.+....+.... ...+ ..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-----p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT-----G--------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC-----C--------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHH
Confidence 457788889999999999999876432 1 1245678999999999999888776632 1122 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccC----------------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQME----------------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~----------------p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~ 1182 (2037)
..+..|.+.|+|++|...|+...... |.+......+..++.+.|+++......+.+....|...
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 34567889999999999998532222 22355667788999999999988777776655444322
Q ss_pred hhHhHHH-------------------------------------HHHHHhcCChhhHHHHhhcccccCccccCCCCCcch
Q 000149 1183 KTWCMQG-------------------------------------VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASF 1225 (2037)
Q Consensus 1183 ~~l~~~~-------------------------------------~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f 1225 (2037)
..+..++ +.+..+.|+|+.-.+++..+... +.+...
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 307 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDL 307 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHH
Confidence 2111111 11122456666666665544321 122222
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChH
Q 000149 1226 DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL 1305 (2037)
Q Consensus 1226 ~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~ 1305 (2037)
...++. .....++.++..+..+.+... .+.....+...-....+ ..+.++...++.... +.. +...
T Consensus 308 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~---~~~-~~~~ 373 (597)
T 2xpi_A 308 LLCKAD--TLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE---SGEKNKLYLISNDLV---DRH-PEKA 373 (597)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH---HTCHHHHHHHHHHHH---HHC-TTSH
T ss_pred HHHHHH--HHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH---hCCHHHHHHHHHHHH---hhC-cccH
Confidence 233333 334566666555544443321 11111122221122222 223333333222100 000 0111
Q ss_pred H-HHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh
Q 000149 1306 K-FSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APN 1382 (2037)
Q Consensus 1306 ~-~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~ 1382 (2037)
. ...+.... .-..++. +-+-.+++++ . ........|...+.+..+.|+++.|...+.++.... .+.
T Consensus 374 ~~~~~l~~~~-----~~~g~~~--~A~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 374 VTWLAVGIYY-----LCVNKIS--EARRYFSKSS-T---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHHHHHH-----HHTTCHH--HHHHHHHHHH-H---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHHHHHH-----HHhccHH--HHHHHHHHHH-H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 1 00111111 0011111 1111112211 0 112235678888888888888888888888876654 345
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
.....+..+...|+.++|+..++++++..+ . .+.++..+|..+.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~-----------------~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQ-------------------Y-----------------DPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------C-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C-----------------ChHHHHHHHHHHH
Confidence 666777888888888888888888765211 0 0234556666666
Q ss_pred HhCCCCHHHHHHHHHHHHHh------ccc-hHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHH
Q 000149 1463 YTGQKQKEDVITLYSRVREL------QPM-WEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKG 1535 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l------~~~-weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~s 1535 (2037)
..|+ .+++.+.|+++.+. +|. |..+|+.+|..|-+. | -...|+..|-++
T Consensus 487 ~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------------g--------~~~~A~~~~~~~ 542 (597)
T 2xpi_A 487 NKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------------K--------MYDAAIDALNQG 542 (597)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------------T--------CHHHHHHHHHHH
T ss_pred HhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------------c--------CHHHHHHHHHHH
Confidence 6554 78888888888887 454 467788887665322 0 123577777777
Q ss_pred hccCCcc
Q 000149 1536 LHRGHKN 1542 (2037)
Q Consensus 1536 l~~g~~~ 1542 (2037)
+..+++.
T Consensus 543 ~~~~p~~ 549 (597)
T 2xpi_A 543 LLLSTND 549 (597)
T ss_dssp HHHSSCC
T ss_pred HHhCCCC
Confidence 7776654
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=0.00049 Score=83.92 Aligned_cols=346 Identities=15% Similarity=0.103 Sum_probs=189.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+-+.|++++|...|+.+++..|++......+-.++...|+++......+......|.....+ .....+....|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~-~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY-SNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHCCCHH
Confidence 44566778888888888888888888777666666777777888777666655544445332222 23344566778887
Q ss_pred hHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhH
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL 1280 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L 1280 (2037)
.-.++....-.. .+........+|.++ ...++.++..+..+.+... . +......+..-.-+..+
T Consensus 85 ~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 85 EAIEHYRHALRL------KPDFIDGYINLAAAL--VAAGDMEGAVQAYVSALQY-----N---PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHHSCSSHHHHHHHHHHHH-----C---TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc------CcchHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHc
Confidence 776665543211 011122233444444 3345555544444333211 0 11111011111111122
Q ss_pred HHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHH
Q 000149 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2037)
Q Consensus 1281 ~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklAR 1360 (2037)
.+.++.......... .. +... ..|...-......=+..+-+-.+++++ . +++.....|...+.+..
T Consensus 149 g~~~~A~~~~~~al~-~~---p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 149 GRLEEAKACYLKAIE-TQ---PNFA------VAWSNLGCVFNAQGEIWLAIHHFEKAV-T---LDPNFLDAYINLGNVLK 214 (388)
T ss_dssp SCHHHHHHHHHHHHH-HC---TTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH-H---HCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-hC---CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH-h---cCCCcHHHHHHHHHHHH
Confidence 233333332211000 00 0000 011111110000001111111222221 1 11234567899999999
Q ss_pred HcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000149 1361 LAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2037)
Q Consensus 1361 Kag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 1438 (2037)
+.|.++.|...+.++....+ +.+....+.+++..|+.++|+..++++++..| .
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~------ 269 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-------------------H------ 269 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-------------------S------
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------C------
Confidence 99999999999888876654 34566778889999999999999998876311 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcch
Q 000149 1439 SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSE 1518 (2037)
Q Consensus 1439 ~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~ 1518 (2037)
.+.++..+|..+...|+ .+++++.|.++++++|....+|+.+|..+.+. |
T Consensus 270 -----------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------g--- 319 (388)
T 1w3b_A 270 -----------FPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQ--------------G--- 319 (388)
T ss_dssp -----------CHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------T---
T ss_pred -----------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------C---
Confidence 02356667777766665 78889999999999998888888888665311 1
Q ss_pred hhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1519 KRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1519 ~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
-...|+..|-+++...+++. .....+-.++...|
T Consensus 320 -----~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 320 -----NIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQQG 353 (388)
T ss_dssp -----CHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHHTTT
T ss_pred -----CHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcC
Confidence 12357888888887766542 23334444444444
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.26 E-value=0.0003 Score=90.90 Aligned_cols=479 Identities=12% Similarity=0.082 Sum_probs=248.2
Q ss_pred cchhhhhhhhhhchhhhhhhc-CccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccc
Q 000149 15 DEFDEVRAEAVISLPVIVMWS-GLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNV 93 (2037)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2037)
|+.++||.+++..+.-++..- |+.....++..|+.+..++...|++....+||-+.-..+.. ...+
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-----~~~~-------- 125 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-----DLEA-------- 125 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-----HHHH--------
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-----HHHH--------
Confidence 778899999998888776553 45556667777887877778899999888888876544321 0000
Q ss_pred ccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHHHH
Q 000149 94 EDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIR 173 (2037)
Q Consensus 94 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~ 173 (2037)
.+..++..+. .-+...+. +.-..++. .+. ..++ ...-..+.+++.+++ ...+.+|+.++...|.
T Consensus 126 -------~l~~~l~~l~--~~~~~~~R--~~a~~~l~--~~~-~~~~-~~~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~ 189 (588)
T 1b3u_A 126 -------HFVPLVKRLA--GGDWFTSR--TSACGLFS--VCY-PRVS-SAVKAELRQYFRNLC-SDDTPMVRRAAASKLG 189 (588)
T ss_dssp -------THHHHHHHHH--TCSSHHHH--HHHGGGHH--HHT-TTSC-HHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHh--cCCCcHHH--HHHHHHHH--HHH-HhcC-HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 0011111100 00000000 00000000 000 0000 001245677666665 4568899999999999
Q ss_pred HHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcC
Q 000149 174 RILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD 253 (2037)
Q Consensus 174 ~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (2037)
.+..+...+... ...+..+..++.|++..||.+++..+..+.+. +. .......++..+... ..-+
T Consensus 190 ~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~------~~-----~~~~~~~~~~~l~~~-~~d~ 254 (588)
T 1b3u_A 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQL------LP-----QEDLEALVMPTLRQA-AEDK 254 (588)
T ss_dssp HHHHTSCHHHHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH------SC-----HHHHHHHTHHHHHHH-HTCS
T ss_pred HHHHHhcHHhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh------CC-----HHHHHHHHHHHHHHH-ccCC
Confidence 999987754221 22334555666999999999999999886521 01 011123344444443 3456
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhh
Q 000149 254 DPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELF 332 (2037)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~ 332 (2037)
++.+..+...++|.|+... +.+.+. ..+-.|+..|..+++-||..|..-+-.++....... ......+.+.
T Consensus 255 ~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~~~~~l~ 326 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC------RENVIMSQIL 326 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT------HHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh------hhhHHHHHHH
Confidence 7889999999999996543 334321 223346677788999999999999988877653210 0001124555
Q ss_pred HHHHHhhcCchHHHHHHHHHHhCCChHHHH--Hhhcccccchhhhc-cccChhHH----HHHHHHHHHcCCCchhHHhhh
Q 000149 333 DYLSVRLASRPIMVREFAEAAFGVETEELV--KKMIPAVLPKLVVS-QQDNDQAV----NIINELAKCLNTDMVPLIVTW 405 (2037)
Q Consensus 333 ~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL--~~~~~~~LP~LVl~-~~~~~~~~----~~i~~ia~~~~~~~~~l~~~~ 405 (2037)
+++.+.+......++.-+-..+|- .-..+ ....++++|.|+-. +..+..++ ..+..+++..+.. .+...-
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~ 403 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSL 403 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGG-GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 555554443323333332212221 00000 01234566665532 22221211 1222222222211 011112
Q ss_pred HHHHHHHHhcccc---HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhc
Q 000149 406 IPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482 (2037)
Q Consensus 406 ~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (2037)
+|.+.. ++.... ...+..+|..+....+.+. + .+.++.-++..+.+.+.. .+.. ...++..+.+..
T Consensus 404 lp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~---~~~l~~~l~~~l~d~~~~--Vr~~--a~~~l~~l~~~~ 472 (588)
T 1b3u_A 404 LPAIVE-LAEDAKWRVRLAIIEYMPLLAGQLGVEF---F---DEKLNSLCMAWLVDHVYA--IREA--ATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCGGG---C---CHHHHHHHHHGGGCSSHH--HHHH--HHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHHHHHHHcCHHH---H---HHHHHHHHHHHhcCCcHH--HHHH--HHHHHHHHHHHh
Confidence 233332 222222 2234445544443333211 1 122332233344444332 2211 223333333322
Q ss_pred CCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCcchhhhH
Q 000149 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLS 560 (2037)
Q Consensus 483 ~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~ 560 (2037)
. + .|..+.++-.+.. +...++...|..++.+++.+.+.+|... +.++++-.|...+.. +++|..+++
T Consensus 473 ~-~----~~~~~~llp~l~~----~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 473 G-K----EWAHATIIPKVLA----MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp C-H----HHHHHHTHHHHHH----TTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred C-c----hhHHHHHHHHHHH----HhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 1 1 2333444443332 2334456778889999999999998743 667788788878854 568888999
Q ss_pred HHHHHHHHhc
Q 000149 561 VLHFFIEQLS 570 (2037)
Q Consensus 561 ~W~~fv~~L~ 570 (2037)
++..+...+.
T Consensus 542 ~l~~l~~~~~ 551 (588)
T 1b3u_A 542 SLQKIGPILD 551 (588)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHHhc
Confidence 9988887763
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00079 Score=84.56 Aligned_cols=262 Identities=10% Similarity=0.014 Sum_probs=154.8
Q ss_pred hcCHHHHHHHHHHHHc-----c--CCCc-------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHH
Q 000149 1127 SGNWAEVFTSCEQALQ-----M--EPTS-------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQA 1192 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq-----~--~p~~-------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EA 1192 (2037)
.|++++|..+|+++++ . .|++ ......+-.|+...|+++......+......|. .........+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 7888888888888877 4 3333 334455667778888888877777665555554 3333344566
Q ss_pred HHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhH
Q 000149 1193 AWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2037)
Q Consensus 1193 AWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~ 1272 (2037)
.+..|+|+...+++...-.. .+........+|.++ ...++..+..+.++.+... .+.... ++-
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-----~~~~~~----~~~ 342 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMN--FILQNYDQAGKDFDKAKEL-----DPENIF----PYI 342 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHH--HHTTCTTHHHHHHHHHHHT-----CSSCSH----HHH
T ss_pred HHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHh-----ChhhHH----HHH
Confidence 77888887766655543221 011122233344333 3455555544444333211 110000 000
Q ss_pred HHH-HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHH
Q 000149 1273 FIV-KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2037)
Q Consensus 1273 ~l~-kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~ 1351 (2037)
.+- -+....+.+++.. .++. .+. ..+ .....
T Consensus 343 ~l~~~~~~~~~~~~A~~------------------------~~~~--------------~~~-----~~~-----~~~~~ 374 (514)
T 2gw1_A 343 QLACLAYRENKFDDCET------------------------LFSE--------------AKR-----KFP-----EAPEV 374 (514)
T ss_dssp HHHHHTTTTTCHHHHHH------------------------HHHH--------------HHH-----HST-----TCSHH
T ss_pred HHHHHHHHcCCHHHHHH------------------------HHHH--------------HHH-----Hcc-----cCHHH
Confidence 000 0001111111111 1110 000 011 12357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHH---cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWS---TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~--~p~------~~iE~AKLLW~---~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
|...+.+..+.|+++.|...+.++.... .+. +....|.++.. .|+..+|+..++.++...+
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------- 446 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-------- 446 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------
Confidence 8899999999999999999988876543 222 78889999999 9999999999999876311
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. .+.++..+|..+...|+ .+++...|+++++++|+....+..+
T Consensus 447 -----------~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 447 -----------R-----------------SEQAKIGLAQMKLQQED--IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp -----------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred -----------c-----------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccccHHHHHHH
Confidence 0 13456667776666665 7889999999999999988887766
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.14 E-value=0.0011 Score=81.93 Aligned_cols=303 Identities=12% Similarity=0.074 Sum_probs=186.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+..+...|+|++|..+|+++++..|++......+-.|+..+|+++......+......|.... .......+....|+++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA-ARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHH
Confidence 445778999999999999999999999988889999999999999888887776655554322 2233456778899998
Q ss_pred hHHHHhhcccccCccccCCCCCc---chHHHHHH----------HHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhH
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNA---SFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~---~f~~~l~k----------aLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy 1267 (2037)
.-.+++...-... +... .....++. +......++..+..+.++.+... .+
T Consensus 112 ~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------ 174 (450)
T 2y4t_A 112 EAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CV------ 174 (450)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT------
T ss_pred HHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC------
Confidence 8877766543210 0111 11111111 11112222222222222111100 00
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCch
Q 000149 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAE 1347 (2037)
Q Consensus 1268 ~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~ 1347 (2037)
.........-..-.+.......+...+..+.. . ..
T Consensus 175 -----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-----~~ 209 (450)
T 2y4t_A 175 -----------------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKL-----K-----ND 209 (450)
T ss_dssp -----------------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----H-----CS
T ss_pred -----------------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C-----CC
Confidence 00000000000000000011111111111111 1 12
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHH--------------HHHHHHHHHcCCchHHHHHHHHHhhcCCc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVH--------------MEKAKLLWSTRRSDGAIAELQQNLLNKPV 1413 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~--------------iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~ 1413 (2037)
....|...+.+..+.|+++.|...+.++....+.... ++.+..+...|+..+|+..++++++..|
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p- 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP- 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 2567999999999999999999999998776544322 3348899999999999999999876321
Q ss_pred ccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1414 EVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1414 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. .....+.++..+|..+...|+ .++++..|+++++++|....+|+.+
T Consensus 289 ------------------~-------------~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 289 ------------------S-------------IAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp ------------------S-------------SHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------c-------------chHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHH
Confidence 1 111235567777877766665 8899999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1494 a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|..|... | -...|+..|-+++...+++
T Consensus 336 ~~~~~~~--------------~--------~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 336 AEAYLIE--------------E--------MYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHT--------------T--------CHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHh--------------c--------CHHHHHHHHHHHHHhCcch
Confidence 9876422 0 1236888888888877664
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.0028 Score=79.47 Aligned_cols=379 Identities=8% Similarity=0.026 Sum_probs=195.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHH--hccCC---hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000149 1088 DVSFLMEIYSFLDEPDGLSGLARL--HKSLS---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2037)
Q Consensus 1088 ~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg 1162 (2037)
.+-.+...|...++.+........ ...++ ....+..+.+.|+|++|..+|+++++..|++......+-.|+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 456777888889999888777652 22233 2234556788999999999999999999998888888889999999
Q ss_pred ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH--------------------------------------
Q 000149 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE-------------------------------------- 1204 (2037)
Q Consensus 1163 q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee-------------------------------------- 1204 (2037)
+++......+......|...... ...++............+
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASI-EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGT-HHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99987777666554444221111 111111111111111111
Q ss_pred HhhcccccCccccCCCCCcchHHHHHHHHHHHH---cCCcchHHHHHHHHHHHHhhhh--hhhc---hhhHHhhh-HHHH
Q 000149 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMM---KKDHFSVSDKIGVSKQVLIAPL--AAAG---MDSYTRAY-PFIV 1275 (2037)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~---~~d~~~f~~~I~~aR~~l~~~L--~a~~---~eSy~r~y-~~l~ 1275 (2037)
++......... ............+..++..+. .++..+..+..+.+....-..+ .+.. .......+ ..-.
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 167 FFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHTTSCCCCCC-SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHH-HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11111000000 000001113333444444444 3333333333332222100001 0000 00111111 1111
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhh--ccCChhhhhhhHHHHHhhcCCCCCCchhHHHHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKY--TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWL 1353 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~--~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL 1353 (2037)
-+....+.+++..++.... .. .+. . ..|...-.. ...++ .+-+-.++++ +. ........|.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l--~~--~~~-~------~~~~~l~~~~~~~~~~--~~A~~~~~~~-~~---~~~~~~~~~~ 308 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAI--EL--FPR-V------NSYIYMALIMADRNDS--TEYYNYFDKA-LK---LDSNNSSVYY 308 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHH--HH--CCC-H------HHHHHHHHHHHTSSCC--TTGGGHHHHH-HT---TCTTCTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH--hh--Ccc-H------HHHHHHHHHHHHCCCH--HHHHHHHHHH-hh---cCcCCHHHHH
Confidence 1222233344333332100 00 001 1 111111110 11111 1111112221 11 1223356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1354 QYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1354 ~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
..+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------- 369 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP------------------- 369 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-------------------
Confidence 99999999999999999988887664 456777888888999999999999988875321
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH------HHHHHHhhhHHHHHHHH
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK------GYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK------~~~~la~y~d~l~~~~~ 1505 (2037)
.+ +.++..+|......|+ .+++.+.|.++++..|.... +|+.+|..|-..+
T Consensus 370 ~~-----------------~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 426 (514)
T 2gw1_A 370 EA-----------------PEVPNFFAEILTDKND--FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP---- 426 (514)
T ss_dssp TC-----------------SHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC----
T ss_pred cC-----------------HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh----
Confidence 10 2245556666666554 78888999999999887754 8888887653200
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..| -...|+..|-+++...+..
T Consensus 427 -------~~~--------~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 427 -------TVE--------NFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp -------CTT--------HHHHHHHHHHHHHHHCTTC
T ss_pred -------hcC--------CHHHHHHHHHHHHHhCccc
Confidence 000 1235777777777766554
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.96 E-value=0.0018 Score=82.05 Aligned_cols=139 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------- 411 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ------------- 411 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-------------
Confidence 568889999999999999999999987664 45677888999999999999999999987632110
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLY----------SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~----------akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
+... ... ......|.++... |+ .++++..|+++++.+|....+|+.+|..|
T Consensus 412 ------~~~~---~~~-~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 412 ------EKIH---VGI-GPLIGKATILARQSSQDPTQLDEEK---------FNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp ------SSCS---STT-HHHHHHHHHHHHHHTC----CCHHH---------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------hhhH---HHH-HHHHHHHHHHHHHhhccchhhhHhH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0000 000 0001123333333 33 56788999999999999999999999876
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1498 d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.+.- -...|+..|-+++...+..
T Consensus 473 ~~~g----------------------~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 473 LQME----------------------KIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHHHC--C
T ss_pred HHhc----------------------cHHHHHHHHHHHHHhCCCc
Confidence 4221 0135888888888877654
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.84 E-value=0.0035 Score=79.35 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..|
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------------- 375 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP------------- 375 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 35567777777788888888877777776553 345666777777778888888887777765211
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
.+ +.++..+|..+...|+ .+++.+.|.+++++.|.....|+.+|.++..-..-..
T Consensus 376 ------~~-----------------~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 376 ------TL-----------------PEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp ------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred ------CC-----------------hHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 00 1234445555555544 6777777888877777655555444433322110000
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
.......... ..-...|+..|-+++...+++. .....+-.++...|
T Consensus 431 ~~~~~~~~~~------~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 431 QSSQDPTQLD------EEKFNAAIKLLTKACELDPRSE-QAKIGLAQLKLQME 476 (537)
T ss_dssp HHTC----CC------HHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTT
T ss_pred Hhhccchhhh------HhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhc
Confidence 0000000000 0123468888888888776643 23333434444444
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.80 E-value=0.0017 Score=77.98 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|.++.|...+.++....+ +.+....+.++...|+..+|+..+++++...|
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------------- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 46788899999999999999999999877653 45777889999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch-----------HHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW-----------EKGYFYMAK 1495 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w-----------eK~~~~la~ 1495 (2037)
..+.++..+|..+...|+ .+++...|.+++++.|.. ..+|+.+|.
T Consensus 283 ----------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 283 ----------------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 013456677777766665 788999999999999987 788999988
Q ss_pred hhHHH
Q 000149 1496 YCDDV 1500 (2037)
Q Consensus 1496 y~d~l 1500 (2037)
.|..+
T Consensus 339 ~~~~~ 343 (368)
T 1fch_A 339 ALSML 343 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.0056 Score=68.94 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.....|...+.+..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++.+++..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------ 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------
Confidence 3456789999999999999999999999877653 45777889999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMA 1494 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~------~~weK~~~~la 1494 (2037)
..+.++..+|..+...|+ .+++...|+++++++ |.....+..++
T Consensus 205 ------------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 205 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 014467777877777765 788889999999998 55544444443
No 32
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.72 E-value=0.0079 Score=70.44 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4579999999999999999999999987664 567888899999999999999999998765
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.65 E-value=0.0023 Score=75.02 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=157.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.+...+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|..... ......+....|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-HAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH-HHHHHHHHHHcCC
Confidence 345566788899999999998888888888777778888888898888777766655544433222 2233456677888
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
|+...+++...-... +........+...+ ... . ....++... -+.
T Consensus 105 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~-------~---~~~~~~~~~----------------~~~ 149 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ------PQYEQLGSVNLQAD---VDI-------D---DLNVQSEDF----------------FFA 149 (327)
T ss_dssp HHHHHHHHHHHHHTS------TTTTTC---------------------------------C----------------CTT
T ss_pred HHHHHHHHHHHHHhC------CccHHHHHHHhHHH---HHH-------H---HHHHHHHhH----------------HHH
Confidence 877666554332110 00000000000000 000 0 000000000 001
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++..++ +.=+.. . ......|...+.+
T Consensus 150 ~~~~~~~A~~~~------------------------~~~~~~-------------------~-----~~~~~~~~~la~~ 181 (327)
T 3cv0_A 150 APNEYRECRTLL------------------------HAALEM-------------------N-----PNDAQLHASLGVL 181 (327)
T ss_dssp SHHHHHHHHHHH------------------------HHHHHH-------------------S-----TTCHHHHHHHHHH
T ss_pred HcccHHHHHHHH------------------------HHHHhh-------------------C-----CCCHHHHHHHHHH
Confidence 111112211111 110000 0 0124578889999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++++++..+ .
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~---- 238 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-------------------G---- 238 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C----
Confidence 9999999999999999877653 45677889999999999999999999876311 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~------------weK~~~~la~y~d~l 1500 (2037)
.+.++..+|......|+ .+++.+.|+++++..|. ...+|+.+|..+.+.
T Consensus 239 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 239 -------------YVRVMYNMAVSYSNMSQ--YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 03355666776666665 78899999999999998 788888888776443
No 34
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.63 E-value=0.018 Score=79.73 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000149 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2037)
+....+++.+.++.|++.+|+.+.++.|+++..|..+++..+. ...+..=..+++.+... ....+..++..++..++
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999877554 22344444455555431 01124444444444444
Q ss_pred hhcccC-----CCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 000149 590 PFLERD-----KDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGL 664 (2037)
Q Consensus 590 p~~~~~-----~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl 664 (2037)
..+... .+.| ..++....++..++..+...+ ++ .+.++..-+...+..+
T Consensus 785 ~~l~~~~~~~~~~~p-d~~~~~f~ll~~~l~~~p~~~---------~~----------------s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 785 KLFESTPEQNFSNIS-DTMETFFGCLTQIIKKIPQVL---------ED----------------KTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HHHTSCTTTHHHHTH-HHHHHHHHHHHHHHHSSGGGG---------GC----------------TTSCHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHc
Confidence 444321 0011 111222222222222221111 11 1222444555556666
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCcc
Q 000149 665 NHENLNVRYMVVCELSKLLKLK--SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAV 742 (2037)
Q Consensus 665 ~~en~~Vr~~aL~eL~~~L~~~--~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGal 742 (2037)
.++...+..-+++-|..++... +..++..+.. ....|+..++.+...... .......+++|+.|+..
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~-------~g~~l~~~l~~~~~~~~~----~s~~~~~a~~l~~l~~~ 907 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLA-------TGEQTLYTAMMCVGYLTP----RSQVDKFADILLAMNRK 907 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHHHHHHHHTTSC----GGGGGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-------hHHHHHHHHHHHhcccCC----hhHHHHHHHHHHHHHHH
Confidence 6666666666666666655542 2223333331 234566666655432111 12234456777777766
Q ss_pred Ccc
Q 000149 743 DPA 745 (2037)
Q Consensus 743 Dp~ 745 (2037)
.|.
T Consensus 908 ~~~ 910 (971)
T 2x1g_F 908 YAA 910 (971)
T ss_dssp HHH
T ss_pred CcH
Confidence 664
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.61 E-value=0.0026 Score=74.56 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 273 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG------------ 273 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------------
Confidence 4578999999999999999999999987764 34577788999999999999999999987632210
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL 1482 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l 1482 (2037)
... .. .......+.++..+|..+...|+ .+++...|+++++.
T Consensus 274 -------~~~----~~-~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 274 -------TTP----TG-EASREATRSMWDFFRMLLNVMNR--PDLVELTYAQNVEP 315 (327)
T ss_dssp -------CC----------CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTTCCSHH
T ss_pred -------ccc----cc-cchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHh
Confidence 000 00 00011235677788888777776 45555555544443
No 36
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.60 E-value=0.036 Score=76.58 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000149 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2037)
+......+.+.++.++..+|.+..++.|+++..+.......+. ...++.-..++...... ....+..++..++..++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l 776 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ-ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTL 776 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3466788899999999999999999999999888777654322 23445555566633211 01123333333444444
Q ss_pred hhccc-CCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC
Q 000149 590 PFLER-DKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHEN 668 (2037)
Q Consensus 590 p~~~~-~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en 668 (2037)
+.+.. ..+.| ..++...+++..++..+...+ ++ .+..+..-+..++..+++..
T Consensus 777 ~~~~~~~~~~p-d~~~~~f~ll~~~~~~~~~~~---------~~----------------~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 777 TLFQQGPRDHP-DIVDSFMQLLAQALKRKPDLF---------LC----------------ERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHHCTTTCH-HHHHHHHHHHHHHHHHCGGGG---------GC----------------TTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhhCcccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHcCCCC
Confidence 44432 21222 344555555555544332211 00 11134556667778888889
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 000149 669 LNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 669 ~~Vr~~aL~eL~~~L~~~ 686 (2037)
..+...++.-|..++...
T Consensus 831 ~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 831 APTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988653
No 37
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.56 E-value=0.0026 Score=76.62 Aligned_cols=256 Identities=12% Similarity=-0.013 Sum_probs=152.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+. ....+.+..|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM-ALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHcccc
Confidence 34556678888888888888888888888887778888888888888777776665554454322222 23456667777
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.-.+++...-.. . .+.......+ . .....+. ..-.-+.
T Consensus 149 ~~~A~~~~~~al~~------------------------~-p~~~~~~~~~-------~-----~~~~~~~---~l~~~~~ 188 (365)
T 4eqf_A 149 QQDACEALKNWIKQ------------------------N-PKYKYLVKNK-------K-----GSPGLTR---RMSKSPV 188 (365)
T ss_dssp HHHHHHHHHHHHHH------------------------C-HHHHCC----------------------------------
T ss_pred HHHHHHHHHHHHHh------------------------C-ccchHHHhhh-------c-----cchHHHH---HHHHHHh
Confidence 77665544332110 0 0000000000 0 0000000 0000001
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++..++. .=+.. .+.. .....|...+.+
T Consensus 189 ~~g~~~~A~~~~~------------------------~al~~-------------------~p~~---~~~~~~~~l~~~ 222 (365)
T 4eqf_A 189 DSSVLEGVKELYL------------------------EAAHQ-------------------NGDM---IDPDLQTGLGVL 222 (365)
T ss_dssp CCHHHHHHHHHHH------------------------HHHHH-------------------SCSS---CCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH------------------------HHHHh-------------------CcCc---cCHHHHHHHHHH
Confidence 1112222222211 00000 0110 024568888999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+....+.++...|+..+|+..+++++...| .
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~---- 279 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-------------------G---- 279 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------C----
Confidence 9999999999999999877643 45677889999999999999999999876311 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~------------weK~~~~la~y~d~ 1499 (2037)
.+.++..+|..+...|+ .+++...|++|+++.|+ ....|..+|..+..
T Consensus 280 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 280 -------------FIRSRYNLGISCINLGA--YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp -------------CHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 14466677777766665 68888999999999886 24567777766543
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.50 E-value=0.27 Score=64.23 Aligned_cols=462 Identities=13% Similarity=0.125 Sum_probs=234.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+..-+.++ ......+++-.+...+..+++...+...+ -+..+..-|.|++..+|-.|-+++..+.
T Consensus 50 ~~~~vi~l-~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------- 114 (591)
T 2vgl_B 50 LFPDVVNC-MQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--------- 114 (591)
T ss_dssp GHHHHHHT-TSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC---------
Confidence 44445554 34455666766666776666543322111 1234455579999999999988887743
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
+..-.+.++..+.+.+. -+||.|+.+...+++.|.. ...|... -.+=.|.+-|..+|+.|+..|..-|
T Consensus 115 ------~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 115 ------VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp ------SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 11122445666777665 5689999999999999955 2345443 2345688888999999999999999
Q ss_pred HHHHhhhhcc-CcccccchhhhhhhhhhHHHHHhhc-CchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhH
Q 000149 306 RKSCFFHLKG-GCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQA 383 (2037)
Q Consensus 306 ~~la~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~l~-~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~ 383 (2037)
..+|...... .+.+ ....+..+++.+. ..|..-..+. ++|.... | ..+..+
T Consensus 185 ~~i~~~~~~~~~~~l--------~~~~~~~Ll~~l~~~~~~~q~~il---------~~l~~l~----~------~~~~~~ 237 (591)
T 2vgl_B 185 SEISESHPNSNLLDL--------NPQNINKLLTALNECTEWGQIFIL---------DCLSNYN----P------KDDREA 237 (591)
T ss_dssp HHHTTSCCSCCSCCC--------HHHHHHHHHHHHHHCCHHHHHHHH---------HHHHTSC----C------CSHHHH
T ss_pred HHHHhhCCCccchhc--------cHHHHHHHHHcCCCCCchHHHHHH---------HHHHHhC----C------CChHHH
Confidence 9998765322 1111 1122333443332 1121111100 0111110 1 111011
Q ss_pred HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcC-----CC-hHHHHHhhhHHHHHHHHHhhc
Q 000149 384 VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTG-----SD-NQEIFAAALPALLDELICFVD 457 (2037)
Q Consensus 384 ~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~-----~~-~~~~~~~~~~~~l~ell~~~~ 457 (2037)
...+..+.. ++...+..-..++...+..... .+ .+.++....+.++ . +.
T Consensus 238 ~~~l~~l~~--------------------~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~----L~ 292 (591)
T 2vgl_B 238 QSICERVTP--------------------RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-T----LL 292 (591)
T ss_dssp HHHHHHHTT--------------------CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-H----HT
T ss_pred HHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-H----Hh
Confidence 111111111 1112223333444443333221 11 2222333333333 2 22
Q ss_pred CCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccc
Q 000149 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTY 537 (2037)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~ 537 (2037)
.+|.+ .+.. +-.++..+... .++.+..++. .|- +.. +++...|++++.-+.. ++... -
T Consensus 293 ~~d~~--vr~~--aL~~l~~i~~~--~p~~~~~~~~--------~~~-~~~-~d~~~Ir~~al~~L~~---l~~~~---n 350 (591)
T 2vgl_B 293 SGEPE--VQYV--ALRNINLIVQK--RPEILKQEIK--------VFF-VKY-NDPIYVKLEKLDIMIR---LASQA---N 350 (591)
T ss_dssp TSCHH--HHHH--HHHHHHHHHHH--CCSTTTTCTT--------TTS-CCT-TSCHHHHHHHHHHHHH---TCCSS---T
T ss_pred cCCcc--HHHH--HHHHHHHHHHh--ChHHHHHHHH--------hhe-ecc-CChHHHHHHHHHHHHH---HCChh---h
Confidence 23332 1211 12233333221 2332222211 110 111 3457788888754443 33331 1
Q ss_pred hHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 000149 538 VPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVL 615 (2037)
Q Consensus 538 ~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~ 615 (2037)
...|+.-|...+.. ++++..++.+-..+... ..+....++..++.++..- .....+.+...+..|+.
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--------~~~~~~~~v~~Ll~ll~~~---~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--------VEQSAERCVSTLLDLIQTK---VNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHH
Confidence 34455555555543 34555544333333322 2233456666777777522 22345566666777776
Q ss_pred HhHH-------HHHhhcccCCCCCCchhh-HHHHHHHHHhcCC-CCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000149 616 KNRA-------ILKQHIHEFPLLPSIAAL-TEVNKAIQEARGP-MTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 616 ~n~~-------~L~~~i~~lp~Lp~ip~L-~~v~~~l~~~r~~-~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~ 686 (2037)
.+.+ .|.+.+.+ .. .|.. ..+--.+-++... .+..+.++.|+++...|+..|+.++++.+.++..+.
T Consensus 420 ~~p~~~~~~v~~L~~~l~~---~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 420 KYPNKYESIIATLCENLDS---LD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp HSCSSCCTTHHHHHHTTTT---CC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HCcchHHHHHHHHHHHHHh---cc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 6542 22222221 11 1322 1122223344332 346788999999999999999999999999987654
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc
Q 000149 687 SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA 741 (2037)
Q Consensus 687 ~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa 741 (2037)
. . ....++..+|..|...+ .+.+++..+.+.++++..
T Consensus 496 p------------~---~~~~~i~~ll~~~~~d~---~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 496 P------------S---ETQELVQQVLSLATQDS---DNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp C------------S---TTHHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTTTT
T ss_pred c------------h---HHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHHHCc
Confidence 2 1 12356677777665322 246899999999999965
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.48 E-value=0.011 Score=72.02 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
.+.+|...+.+..+.|+++.|...+.++... +. ..+....|.+++..|+..+|+..+++++...+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ------- 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 3567899999999999999999988877543 22 34567789999999999999999999876211
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
...+....+.++..+|......|+ .+++.+.|++|.++.+.....
T Consensus 335 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 335 -----------------------ELGDRIGEARACWSLGNAHSAIGG--HERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp -----------------------HHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCHHHHH
T ss_pred -----------------------HCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhhcccc
Confidence 001223457788899998888876 889999999999998866433
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.46 E-value=0.017 Score=69.73 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+..+.|.++.|...+.++... +. ..+....|.++...|+..+|+..++.+++..+.
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 299 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 299 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----
Confidence 34568899999999999999999988887543 22 235667899999999999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|......|+ .+++.+.|++|.++.+.. ..++..
T Consensus 300 -------------------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 300 -------------------------LNDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------cCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 01123457788888988888876 889999999999885543 456667
Q ss_pred HHhhhHHH
Q 000149 1493 MAKYCDDV 1500 (2037)
Q Consensus 1493 la~y~d~l 1500 (2037)
+|..|..+
T Consensus 353 l~~~~~~~ 360 (406)
T 3sf4_A 353 LSDLQMVL 360 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77665443
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.38 E-value=0.0031 Score=70.66 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
.|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------- 190 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---------------- 190 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 47777888888999999998888887664 355777888999999999999999998875311
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
..+.++..+|......|+ .+++.+.|+++++++|+...+++.++...
T Consensus 191 --------------------~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 191 --------------------GHADAFYNAGVTYAYKEN--REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTC--TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred --------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 013456777777777665 67788899999999999988888876653
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.35 E-value=0.026 Score=65.55 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+..+.|+++.|...+.++... +. +.+....|.++...|+..+|+..+++++...+.
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 295 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----
Confidence 34568899999999999999999988876543 22 345667889999999999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
..+....+.++..+|......|+ .+++...|+++.++.+.
T Consensus 296 -------------------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 -------------------------LKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp -------------------------HTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHC---
T ss_pred -------------------------cCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHh
Confidence 01123457788888988888876 78888889998888764
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.34 E-value=0.038 Score=63.07 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCC---chHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRR---SDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~---~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...|...+..+...+.++.|...+.++....+ +.+.+..++++...|+ ..+|+..++++++.... .
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~---- 212 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----G---- 212 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----G----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----c----
Confidence 45677888667777799999999999877654 3567778888888888 78899999988763110 0
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
| .. .+...+.++..+|......|+ .+++++.|+++++++|+.+.++-.++..
T Consensus 213 -------~-----------~~-~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 213 -------G-----------AK-YKDELIEANEYIAYYYTINRD--KVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp -------G-----------GG-GHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred -------c-----------cc-chHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 0 00 123446788889998877765 8999999999999999988887766543
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.31 E-value=0.0027 Score=73.15 Aligned_cols=177 Identities=16% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2037)
++++..+|+.++..|..+++-++........+|+..|...|. .+ ..+..++.|-..+...+. ..+.+++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~----~~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA----KRFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Confidence 345688899999999999987655455556889999999995 44 467789999999998875 36788888888
Q ss_pred HHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 000149 586 AALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLN 665 (2037)
Q Consensus 586 ~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~ 665 (2037)
..++..+. +....+++.+...+..++. ..++..-+..+...++
T Consensus 101 p~ll~~l~---d~~~~vr~~a~~aL~~~~~----------------------------------~~~~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 101 PSLLEKFK---EKKPNVVTALREAIDAIYA----------------------------------STSLEAQQESIVESLS 143 (242)
T ss_dssp HHHHHGGG---CCCHHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHc
Confidence 88887775 3334456666666665533 1234455667788899
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 666 HENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 666 ~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
|.|+.||..++.-|...+.....+ .. ..+.+..++..|+.+..+. ..+++..+.+|||.|+
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~~~--------~~-~~~~l~~l~p~l~~~l~D~-----~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQPT--------AL-NKKLLKLLTTSLVKTLNEP-----DPTVRDSSAEALGTLI 204 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCGG--------GC-CHHHHHHHHHHHHHHHTSS-----CHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCC--------Cc-cHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHH
Confidence 999999999999999887664211 00 1134667777777766543 2589999999999966
No 45
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.28 E-value=0.27 Score=68.65 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChh-
Q 000149 1040 AIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ- 1118 (2037)
Q Consensus 1040 ~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~- 1118 (2037)
.....-+|..+..-|.|+-|...+|..-+ ....+..+|.+++..|.+.-+..+-..+.+=
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHH
Confidence 33466799999999999999999988521 1112233333555555554444322221111
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
+-.-.++..|+|.+|..+|+++ ++.+....+..|+.++|+|+.+..+..-.....++. .+...-+.|-.++++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcC
Confidence 2234578999999999999875 556666789999999999999887765322211110 011123445567799
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.+++|+..... ..+. .+|..+ ...+++++....-+.+ ..|.+.-..++++
T Consensus 1183 leele~fI~~~n~-----------ad~~-~iGd~l--e~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkL- 1234 (1630)
T 1xi4_A 1183 LAELEEFINGPNN-----------AHIQ-QVGDRC--YDEKMYDAAKLLYNNV-------------SNFGRLASTLVHL- 1234 (1630)
T ss_pred HHHHHHHHhCCCH-----------HHHH-HHHHHH--HhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHh-
Confidence 9999998753321 2232 355443 3345554444333221 2333333333333
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
.|++++++... ++ ....+|.+.+-.
T Consensus 1235 --ge~q~AIEaar--------------------------------------------KA---------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1235 --GEYQAAVDGAR--------------------------------------------KA---------NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHHH--------------------------------------------Hh---------CCHHHHHHHHHH
Confidence 44555544332 11 002478888888
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1359 CRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
|-..|.+..|..+.++. ...|+..-+-++.+-+.|..++||..++.++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988753 23455555778888899999999999998875
No 46
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.26 E-value=0.095 Score=65.09 Aligned_cols=401 Identities=14% Similarity=0.103 Sum_probs=193.3
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchh-hH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN-EL-KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
.+.+++..+|..+...+..++... .+...... +. .++..+-+.+...+|+.++...+..++.|.......
T Consensus 28 ~l~s~~~~~r~~A~~~L~~l~~~~--------~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 28 MIFSKSPEQQLSATQKFRKLLSKE--------PNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSS--------SSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCC--------CCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 348999999999999999865210 00000111 11 466777776766668999999999999985421111
Q ss_pred chhH--HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHHHHHHHH
Q 000149 276 SQHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAE 351 (2037)
Q Consensus 276 ~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~~~~~~e 351 (2037)
.+.+ .-++-.|++.|.++++.+|..|..-|.+++...... +..-+...+.+.+++-+.. .+.+....+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~- 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-------RDYVLDCNILPPLLQLFSKQNRLTMTRNAV- 171 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHH-
Confidence 1111 124556888899999999999999999997643110 0000111233444444442 122222211
Q ss_pred HHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHc-CCCchhHHhhhHHHHHHHHhccccHH---HHHHHHH
Q 000149 352 AAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCL-NTDMVPLIVTWIPKVLAFALHQADER---RLLSALE 427 (2037)
Q Consensus 352 ~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~-~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~ 427 (2037)
..+..|+... ...-..++ ......|..++...+++ ....+|.
T Consensus 172 ---------------------------------~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 172 ---------------------------------WALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp ---------------------------------HHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1112221110 00001111 11112222233333322 2233333
Q ss_pred HHHhhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhh-hhHHHHHHHHHHhhh
Q 000149 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPG-FLRNHFVGLLNSIDR 505 (2037)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fl~~~~LGil~~~~~ 505 (2037)
.+........+.+.. ..+|.++ + .+...+.+. + ..+...++.+..+.+.... ++.. |++..+-.
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~-~---ll~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ 283 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLV-E---LLMHNDYKV--V-----SPALRAVGNIVTGDDIQTQVILNC---SALQSLLH 283 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHH-H---HHCCCchhH--H-----HHHHHHHHHHhhCChHHHHHHHHC---ccHHHHHH
Confidence 333211001111222 2334444 2 333333221 1 1233334434333322211 2222 45554433
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000149 506 KMLHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2037)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2037)
. +..++...++.++.+|+.|..-....+ ..+.|.++..|.+. .++++..++.+-..+...- +++.+..+
T Consensus 284 l-l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~---~~~~~~~l 357 (450)
T 2jdq_A 284 L-LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGG---SAEQIKYL 357 (450)
T ss_dssp H-TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred H-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHH
Confidence 3 334456788899999988764111111 24566666666653 4556666666555555432 22344444
Q ss_pred HH-HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHH
Q 000149 581 IS-QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659 (2037)
Q Consensus 581 l~-~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~ 659 (2037)
++ .++..|+.+++.. ....+..+...|..|+......-. ... ..++ .+...+.+..+ .+.|
T Consensus 358 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~--~~~----~~~~---~~~~~l~~~g~----~~~l-- 419 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVM---DSKIVQVALNGLENILRLGEQEAK--RNG----TGIN---PYCALIEEAYG----LDKI-- 419 (450)
T ss_dssp HHHTCHHHHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHH--HSC----SCCC---HHHHHHHHHHC----HHHH--
T ss_pred HHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhh--ccc----cchh---HHHHHHHHcCc----HHHH--
Confidence 43 3556666666532 345677888888887765432211 000 0111 12223333322 1222
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000149 660 AVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 660 ~~~rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
..-..|+|..|+..|+.-|..++....
T Consensus 420 -~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 420 -EFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 233467788899999988888875443
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.22 E-value=0.017 Score=69.44 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=139.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil 1122 (2037)
...++....+.|.|..|+.+++..+... | +.++....+ ..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~ 107 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-----P-----------------------GDAEAWQFL------------GI 107 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-----------------------CCHHHHHHH------------HH
Confidence 4578899999999999999999977642 1 011222222 23
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
.+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----------- 176 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS----------- 176 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc-----------
Confidence 456789999999999999999999988888899999999999988777766554444322211111000
Q ss_pred HHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHH-HHhhhHH
Q 000149 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VKLHLLQ 1281 (2037)
Q Consensus 1203 ee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l-~kLh~L~ 1281 (2037)
......+|.++ ...++..+..+.++.+... .+... ....+-.+ .-+....
T Consensus 177 --------------------~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 177 --------------------PGLTRRMSKSP--VDSSVLEGVKELYLEAAHQ-----NGDMI--DPDLQTGLGVLFHLSG 227 (365)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHH-----SCSSC--CHHHHHHHHHHHHHHT
T ss_pred --------------------hHHHHHHHHHH--hhhhhHHHHHHHHHHHHHh-----CcCcc--CHHHHHHHHHHHHHCC
Confidence 00011111111 1112222222222222111 00000 00011000 0111112
Q ss_pred HHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHH
Q 000149 1282 ELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRL 1361 (2037)
Q Consensus 1282 ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARK 1361 (2037)
+.+++..++. .=+.. . +.....|...+.+..+
T Consensus 228 ~~~~A~~~~~------------------------~al~~-------------------~-----p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 228 EFNRAIDAFN------------------------AALTV-------------------R-----PEDYSLWNRLGATLAN 259 (365)
T ss_dssp CHHHHHHHHH------------------------HHHHH-------------------C-----TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH------------------------HHHHh-------------------C-----CCCHHHHHHHHHHHHH
Confidence 2222222211 00000 0 1225579999999999
Q ss_pred cCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1362 AGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1362 ag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999877653 456778899999999999999999999873
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.16 E-value=0.033 Score=66.55 Aligned_cols=263 Identities=12% Similarity=0.067 Sum_probs=141.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
..++....+.|.|..|+.+++..+... |. ....+..|. ..
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~~~~~l~----------------------------~~ 107 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQD-----PK-------HMEAWQYLG----------------------------TT 107 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-----TT-------CHHHHHHHH----------------------------HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHH----------------------------HH
Confidence 467788888888888888888876531 10 011122222 23
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHH--------------H
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQ--------------G 1189 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~--------------~ 1189 (2037)
+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+... .
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 45667788888888888777777777777777777777887776666665544444332222111 1
Q ss_pred HHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHh
Q 000149 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r 1269 (2037)
+......|+|+...+++...-... +..........+|.++ ...++..+..+.++.+... .+. . ..
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~~~---~-~~ 252 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLD----PTSIDPDVQCGLGVLF--NLSGEYDKAVDCFTAALSV-----RPN---D-YL 252 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHS----TTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----CTT---C-HH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhC----cCcccHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh-----CcC---C-HH
Confidence 222225666766665554432110 0000122333344333 3455555444444333221 010 0 00
Q ss_pred hhHHHHH-hhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchh
Q 000149 1270 AYPFIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEV 1348 (2037)
Q Consensus 1270 ~y~~l~k-Lh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~ 1348 (2037)
++-.+-. +..+.+.+++...+ +. .+. .. +..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~------------------------~~--------------al~-----~~-----~~~ 284 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAY------------------------RR--------------ALE-----LQ-----PGY 284 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------------HH--------------HHH-----HC-----TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------------HH--------------HHH-----hC-----CCc
Confidence 1111100 01111111111111 10 000 01 123
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C-----------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--A-----------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~-----------p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...|...+.+..+.|+++.|...+.++.... . +.+....+..+...|+.++|....+..++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 4678999999999999999999988876542 2 45677788999999999998887766554
No 49
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.12 E-value=0.073 Score=68.34 Aligned_cols=400 Identities=12% Similarity=0.090 Sum_probs=193.7
Q ss_pred hcccHHHHHHHHHHHhHhhhh---hhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000149 200 LNKRKAIRDAFCTQIGYFLQD---TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2037)
.+++..+|..++..+..++.. +-...+. ...++..+.+.+...+|+.+++..+.+++.|........
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~----------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVI----------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH----------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHH----------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 788899999999999887621 1111111 123455666666655689999999999999844211111
Q ss_pred hhH--HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCc-hHHHHHHHHHH
Q 000149 277 QHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAA 353 (2037)
Q Consensus 277 e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~e~l 353 (2037)
..+ .-++-.|+..|.++++-++..|..-|.++|...... +..-....+.+.++.-+... |.+....
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~-------~~~~~~~~~l~~L~~ll~~~~~~v~~~a---- 235 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY-------RDYVLQCNAMEPILGLFNSNKPSLIRTA---- 235 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHGGGSCCHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc-------hHHHHHcCcHHHHHHHhccCCHHHHHHH----
Confidence 111 112445777778899999999999999997542110 00000011223333333221 1111111
Q ss_pred hCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHH---HHHHHHHH
Q 000149 354 FGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL---LSALEFYC 430 (2037)
Q Consensus 354 l~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~---~~~l~~~~ 430 (2037)
...|..|+...+..............|..++..++++.. ..+|..+.
T Consensus 236 ------------------------------~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 236 ------------------------------TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp ------------------------------HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 122222222110111122223333344444444444333 33444433
Q ss_pred hhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCCh-hhhhHHHHHHHHHHhhhhhc
Q 000149 431 IQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDL-PGFLRNHFVGLLNSIDRKML 508 (2037)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fl~~~~LGil~~~~~~l~ 508 (2037)
.......+.++. ..+|.++ + .+...+.+. + ..++..++.+..+.+.. ..++.. |++..+-.. +
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~l-L 350 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLV-E---LLSHESTLV--Q-----TPALRAVGNIVTGNDLQTQVVINA---GVLPALRLL-L 350 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHH-H---GGGCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHH-T
T ss_pred CCCHHHHHHHHhcCcHHHHH-H---HHCCCChhh--H-----HHHHHHHHHHHcCCHHHHHHHHHc---chHHHHHHH-H
Confidence 211101122222 2333333 2 344433221 1 12333444444333222 223333 444444322 3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH-
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS- 582 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~- 582 (2037)
...+...++.++.+|+.+..-....+ ..+.|.++..|.+ ..++++..++.+-..+...-.. .|+....++.
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~ 427 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQ 427 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHC
Confidence 34467788899999988764111122 2466777777765 2456666666665555554210 0123333221
Q ss_pred HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 000149 583 QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662 (2037)
Q Consensus 583 ~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~ 662 (2037)
.++..|+.++.. .....+..+...|..|+............ . ...+...+.+.. -+..+..
T Consensus 428 ~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~g-------~~~~L~~ 488 (530)
T 1wa5_B 428 GCIKPLCDLLEI---ADNRIIEVTLDALENILKMGEADKEARGL------N---INENADFIEKAG-------GMEKIFN 488 (530)
T ss_dssp TCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHTC------S---SCHHHHHHHHTT-------HHHHHHG
T ss_pred CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhhcccc------c---ccHHHHHHHHcC-------cHHHHHH
Confidence 244455555542 23456778888888887654332211000 0 111222222211 1233344
Q ss_pred hccCCChhHHHHHHHHHHHHHhhcH
Q 000149 663 GLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 663 rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
-++|+|..|+..|..-|..++....
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHCCccc
Confidence 5678999999999999988876543
No 50
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.08 E-value=1.3 Score=56.41 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcC----Ch----HHHHHHHHHHhhc--CCChHHHHHHHHHHH-------cCCch-------HHHHHH
Q 000149 1349 GNCWLQYAKLCRLAG----HY----ETATRAILEAQAS--GAPNVHMEKAKLLWS-------TRRSD-------GAIAEL 1404 (2037)
Q Consensus 1349 ~~~WL~~AklARKag----~~----~~A~~aLl~a~~~--~~p~~~iE~AKLLW~-------~g~~~-------~Ai~~L 1404 (2037)
...|..+...-++++ .. +.|.....+|... ..+.+-+.+|++++. .|+.. +|+..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 467888887777643 11 2333344444333 457788999999997 78876 899999
Q ss_pred HHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000149 1405 QQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2037)
Q Consensus 1405 ~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~ 1484 (2037)
+++++.. .|. .+.+++.+|.+....|+ .+++.+.|.++++..|
T Consensus 310 ~~Al~~~------------------~p~-----------------~~~l~~~~~~~~~~~g~--~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 310 ERAISTL------------------LKK-----------------NMLLYFAYADYEESRMK--YEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHTTTT------------------CSS-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSSS
T ss_pred HHHHHHh------------------Ccc-----------------cHHHHHHHHHHHHhcCC--HHHHHHHHHHHhCccc
Confidence 9987521 010 14567888888877775 8899999999999999
Q ss_pred ch-HHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1485 MW-EKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1485 ~w-eK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
.. ..+|..+|.++.+.- -...|...|-+++...+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAE----------------------GIKSGRMIFKKAREDART 388 (530)
T ss_dssp SCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCTTC
T ss_pred cCchHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHhccCC
Confidence 75 478999988764321 123577888888876554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.07 E-value=0.046 Score=61.66 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------------- 206 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-------------- 206 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------
Confidence 3456777888888888888888888876654 345677788888888888888888888765211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~ 1491 (2037)
. ...++..++......|+ .+++.+.|+++.+..|.....+.
T Consensus 207 -----~-----------------~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 207 -----Q-----------------NARSLLLGIRLAKVFED--RDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp -----C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -----C-----------------cHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCHHHHH
Confidence 0 02244555555555554 67788888888888887654443
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.02 E-value=0.11 Score=66.65 Aligned_cols=399 Identities=15% Similarity=0.091 Sum_probs=196.0
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000149 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2037)
|.+++..+|..++..+..++ ++....... .....+..+-+.+...+++.+++..+.+++.|+.......
T Consensus 83 L~s~~~~~~~~A~~~L~~l~---------s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLL---------SIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHH---------TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh---------cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 38889999999999998875 211100000 1123455666666665669999999999999954222222
Q ss_pred hhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHHHHHHHHH
Q 000149 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAEA 352 (2037)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~~~~~~e~ 352 (2037)
..+.- ++-.|+..|.++++-++..|..-|.++|...... +..-......+++++-|.. .|.+....|
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~-- 224 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-------RDLVLANGALLPLLAQLNEHTKLSMLRNAT-- 224 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-------HHHHHHTTCHHHHHHTCCTTCCHHHHHHHH--
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHHHCCcHHHHHHHHhcCCCHHHHHHHH--
Confidence 22211 4556889999999999999999999997543110 0000001122334433321 222222222
Q ss_pred HhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhh
Q 000149 353 AFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQ 432 (2037)
Q Consensus 353 ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~ 432 (2037)
.+|..++.... .............|..++...+++....++.-+...
T Consensus 225 --------------------------------~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 225 --------------------------------WTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp --------------------------------HHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 12222211100 001111122233333444444444333333333322
Q ss_pred cCCCh---HHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChh-hhhHHHHHHHHHHhhhhh
Q 000149 433 TGSDN---QEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKM 507 (2037)
Q Consensus 433 ~~~~~---~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l 507 (2037)
...+. +.++. ..+|.++ + .+..++... + ..++..++.+..+..... .++.. |++..+-..+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL 337 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLV-E---LLLHPSPSV--L-----IPALRTVGNIVTGDDAQTQCIIDH---QALPCLLSLL 337 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHH-H---HHcCCChhH--H-----HHHHHHHHHHHcCCHHHHHHHHHh---hhHHHHHHHH
Confidence 22222 12222 2333333 2 334443221 1 234444444444332221 22222 3333333323
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS 582 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~ 582 (2037)
.++.+...++.+..+|+.|..--...+ ..+.|.++..|.+. .++++..++.+...+...- +++....++.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~ 412 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG---SHDQIKYLVS 412 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 333267788999999988864111112 14567777777664 5567777766666665541 2233333332
Q ss_pred -HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 583 -QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 583 -~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
.++..|+.++... ....+..+...|..|+......-. .... +. ..+...+.+..+ +..+.
T Consensus 413 ~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~-~~~~----~~----~~~~~~i~~~~~-------~~~l~ 473 (528)
T 4b8j_A 413 EGCIKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKT-LAAG----DV----NVFSQMIDEAEG-------LEKIE 473 (528)
T ss_dssp TTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHH-HHTC----SC----CHHHHHHHHTTH-------HHHHH
T ss_pred CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhh-cccc----cc----cHHHHHHHHCCc-------HHHHH
Confidence 3555666666532 335577888888888765433111 1100 11 112223332221 22333
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~ 686 (2037)
+-..|+|..|+..|..-|..++...
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 4457899999999988888877653
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.014 Score=72.75 Aligned_cols=318 Identities=10% Similarity=-0.013 Sum_probs=156.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----hc-cC---
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----HK-SL--- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~-~~--- 1115 (2037)
..|+..-..=|.|..||-++++.+.-.+... +. ......-..+..|..+|..+++.+........ .. ..
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-~~--~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEH-AD--QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-GG--GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-cc--ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4678888888999999999998654211000 00 00011123567899999999999987665431 11 11
Q ss_pred Ch------hHHHHHHH--hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHH---HhccChHHHHHHhhhhhccchhhhhh
Q 000149 1116 SL------QDELLSNK--KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL---LNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1116 ~l------~~qil~~E--~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL---~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
.. ......+- ..+++++|..+|+++++..|++.+...++-.++ .+.|+.+..+...+......|.....
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 11 11122222 345799999999999999999998877766664 44555554444333333333332222
Q ss_pred HhHHHHH---HHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhh
Q 000149 1185 WCMQGVQ---AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAA 1261 (2037)
Q Consensus 1185 l~~~~~E---AAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a 1261 (2037)
+..++.. .....|+++...+++...-.. .+........+|.++ ...++..+..+..+.+... .+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~-----~p 278 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFY--RRKDEPDKAIELLKKALEY-----IP 278 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----ST
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHH--HHcCchHHHHHHHHHHHHh-----CC
Confidence 2222221 112345555555555433211 011122333455443 3455555544444433221 11
Q ss_pred hchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCC
Q 000149 1262 AGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA 1341 (2037)
Q Consensus 1262 ~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~ 1341 (2037)
.... +|..+-.++. +.......... . ...........++ +.+-.++++ ..
T Consensus 279 ~~~~----~~~~lg~~y~----~~~~~~~~~~~---~----~~~~~~~~~~~~~-------------~A~~~~~~a-~~- 328 (472)
T 4g1t_A 279 NNAY----LHCQIGCCYR----AKVFQVMNLRE---N----GMYGKRKLLELIG-------------HAVAHLKKA-DE- 328 (472)
T ss_dssp TCHH----HHHHHHHHHH----HHHHHHHHC-------------CHHHHHHHHH-------------HHHHHHHHH-HH-
T ss_pred ChHH----HHHHHHHHHH----HHHHHhhhHHH---H----HHHHHHHHHhhHH-------------HHHHHHHHH-hh-
Confidence 1111 1111111110 00000000000 0 0000000000010 111111221 11
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHH-HHcCCchHHHHHHHHHhh
Q 000149 1342 SGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLL-WSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1342 ~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~-----~~iE~AKLL-W~~g~~~~Ai~~L~~~i~ 1409 (2037)
++......|...+.+..+.|+++.|.....+|.....+. +....+.++ ...|+.++|+...+++++
T Consensus 329 --~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 329 --ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp --HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred --cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112234568899999999999999999999987765443 233445544 467888999999999886
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.82 E-value=0.27 Score=61.04 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=112.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchH-HHHHHHHHHhc--CCCcchhhhHHHHHHHHHhc------c-------
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVP-KILVLLMHAIN--KESLQCEGLSVLHFFIEQLS------R------- 571 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~p-qI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~------~------- 571 (2037)
....+...|+.+++.++.+++..+..+..+.+ .|+..+...+. .++++..++..|..++.... +
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 34456778888999999999988777766666 77776666664 45688999999999887641 0
Q ss_pred ----CCCcchhhHHHHHHHHhhhhcccCCC----CchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHH
Q 000149 572 ----VSPSSTKHVISQVFAALIPFLERDKD----NPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKA 643 (2037)
Q Consensus 572 ----~~~~~l~~ll~~i~~~lip~~~~~~~----~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~ 643 (2037)
.....+++.+..++..++..+...++ .....+..+...|..|....
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~-------------------------- 359 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------------------------- 359 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--------------------------
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc--------------------------
Confidence 00112233445555555444432110 01112344444444443221
Q ss_pred HHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC-chhHHHHHHHHHHHhhhhccc
Q 000149 644 IQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD-LDVLSTLISSLLRGCAEESRT 722 (2037)
Q Consensus 644 l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~-~~vi~~Lv~sLL~~c~~~~~t 722 (2037)
+..-+..-+..+...+++.+..+|.-|+.-|..+... ..+.. .+.+..++..|+.+..+.
T Consensus 360 -----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~-----------~~~~~~~~~l~~~~~~l~~~l~d~--- 420 (462)
T 1ibr_B 360 -----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG-----------PEPSQLKPLVIQAMPTLIELMKDP--- 420 (462)
T ss_dssp -----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-----------SCTTTTCTTTTTHHHHHHHGGGCS---
T ss_pred -----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHhcCC---
Confidence 1111122334445566778888999988887766532 11100 134556777777766542
Q ss_pred cchhhHHHHHHHhhcccCccCc
Q 000149 723 VVGQKLKLVCADCLGALGAVDP 744 (2037)
Q Consensus 723 ~~~~~I~~lca~CLG~IGalDp 744 (2037)
+..++..|+.|||.++..-+
T Consensus 421 --~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 421 --SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp --CHHHHHHHHHHHHHHHHHGG
T ss_pred --CHHHHHHHHHHHHHHHHhcc
Confidence 25899999999999986543
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.79 E-value=0.11 Score=64.57 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=91.5
Q ss_pred HHHHhhccc-CccchhHHHHHHHHHHHccCCchh-----------hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDV-----------LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~-----------~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
.+..+|-+. .+.+|+-++...|++.+++...+. .-..+..-...|-.++.+++..+ .++|..+..+.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 344555554 467899998899999987653111 00111112222333447777777 77888887764
Q ss_pred hhhhhhhhccccccccchhhHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHHhCCC--
Q 000149 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD-DPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNP-- 293 (2037)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~-- 293 (2037)
... +.. . .+ ..++..+...+...+ |+.+++..+.+++.+++... .-...+...+-.|+..|.++
T Consensus 118 ~~~-----~~~---~-~w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 118 CAE-----IPV---N-QW--PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHH-----GGG---T-CC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHh-----ccc---c-cc--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 211 110 1 11 346666666666544 88999999999999976431 11233444556688888888
Q ss_pred CcchHHHHHHHHHHHH
Q 000149 294 HVTVRMNASRLIRKSC 309 (2037)
Q Consensus 294 n~~~~~~a~~~i~~la 309 (2037)
++.||..|.+-+.++.
T Consensus 187 ~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 187 SNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7899999988777764
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.77 E-value=0.13 Score=56.37 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++....+ +.+....|.+++..|+..+|+..++.++...+.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 179 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV------------- 179 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 45678888888999999999998888876543 456778899999999999999999988652110
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. ...++...+......|. .+++...++.+.+..|....++..+
T Consensus 180 -----~-----------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 180 -----L-----------------QADDLLLGWKIAKALGN--AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----C-----------------CHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 0 02234444555444444 6777777778888888776555433
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.035 Score=66.98 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+..|...+.+..+.|.++.|...+.+|... +. +.+....|.++...|+..+|+..++++++
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999988877543 32 34666789999999999999999999876
No 58
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.67 E-value=1.4 Score=60.76 Aligned_cols=388 Identities=11% Similarity=0.102 Sum_probs=191.9
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccch
Q 000149 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQ 277 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e 277 (2037)
.+++-..|+|++..+.++.+.- .... ..++..+-..+... .+|.|+.+.+.++|+...-...+.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~---------~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETI---------DVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSC---------CSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH
T ss_pred CCCchHHHHHHHHHHHHHHhhc---------Cchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4566778999988888865221 1111 12344444333332 4789999999999998554333557
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh---hcCchHHHHHHHHHHh
Q 000149 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAF 354 (2037)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~~p~~~~~~~e~ll 354 (2037)
.+..++-.|+..|++ +-|+..|...|.++|+.+.+. +.++...+.+.+...+.+. --.++.....++. ++
T Consensus 526 ~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~----l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~-i~ 598 (963)
T 2x19_B 526 MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD----LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF-LL 598 (963)
T ss_dssp HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG----CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-HH
Confidence 777777779999965 789999999999999876542 3455544444444444321 1234444555554 44
Q ss_pred C-CChHHH---HHhhcccccchhhh--ccccChhH-------HHHHHHHHHHcCCC----------------------ch
Q 000149 355 G-VETEEL---VKKMIPAVLPKLVV--SQQDNDQA-------VNIINELAKCLNTD----------------------MV 399 (2037)
Q Consensus 355 ~-~~~~~f---L~~~~~~~LP~LVl--~~~~~~~~-------~~~i~~ia~~~~~~----------------------~~ 399 (2037)
. ++.+++ +..+.+..++.+-. ....+... ...|-.+++.++.. ..
T Consensus 599 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 599 SALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 3 332333 22322222222211 11112221 23344566665532 11
Q ss_pred hHHhhhHHHHHHHHhcc--ccHHHHHHHHHHHHh---hcCCChHHHHHhhhHHHHHHHHH-hhcCCCchHHhhhhcchhH
Q 000149 400 PLIVTWIPKVLAFALHQ--ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELIC-FVDGGDSDEINERLNRVPR 473 (2037)
Q Consensus 400 ~l~~~~~~~Ila~ll~~--~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ell~-~~~~~~~~~~~~~~~~~~~ 473 (2037)
+++..-++ ++-.++.. .+.+....+..++.. ..+.+.. ..+|.++..++. +.+.... .+-.
T Consensus 679 ~~~~~~~~-~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~--------~~l~ 745 (963)
T 2x19_B 679 VVLQQVFQ-LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQA--------SALD 745 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCCH--------HHHH
T ss_pred HHHHHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCcc--------HHHH
Confidence 22222222 22222211 122223333333332 2332222 223444433322 1111111 0111
Q ss_pred HHHHHhhhcCCCC----ChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc--ccc-hHHHHHHHH
Q 000149 474 VIRKVSTVLTGNE----DLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLM 546 (2037)
Q Consensus 474 ~~~~~~~~~~~~~----~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~ 546 (2037)
.+..+.+.....+ .+..+++.-+-.++..|++.+. +....++....-++.+++-+.+.+ ++. ...|+.++.
T Consensus 746 l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 823 (963)
T 2x19_B 746 LTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR--DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAV 823 (963)
T ss_dssp HHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTT--TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcc--cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 1222211111122 2233333222222222322111 234567788999999998887754 344 677888888
Q ss_pred HHhcC--CCcchhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhH
Q 000149 547 HAINK--ESLQCEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNR 618 (2037)
Q Consensus 547 saL~~--~~L~~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~ 618 (2037)
.+|.. .+....++..|..++....... ......++.+++..+. . ..++...+.+..+|..|+..++
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~---~~~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG---G---QASRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT---T---TSCGGGHHHHHHHHHHHHHHSH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc---c---cCChhHHHHHHHHHHHHHHHCh
Confidence 88853 3456678888888876532100 0123344455554442 1 1122234567778877887788
Q ss_pred HHHHhhcccC
Q 000149 619 AILKQHIHEF 628 (2037)
Q Consensus 619 ~~L~~~i~~l 628 (2037)
+.+.+++..+
T Consensus 898 ~~~~~~l~~~ 907 (963)
T 2x19_B 898 SLLSMWIKEA 907 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.66 E-value=0.019 Score=59.06 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=95.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
++++.++.|-.-+....+.|.++.|.....+|....+ +.+....|..++..|+..+|+..++.+++-.|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 5678889999999999999999999999999987754 45777889999999999999999999876211
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
..++++..+|.-+...|+ .+++++.|++|++++|+...++..+|+
T Consensus 79 ---------------------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 79 ---------------------------KFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------------hhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 114567778887777665 889999999999999999888887765
No 60
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.64 E-value=0.13 Score=63.86 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=102.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2037)
.-+.+.++|-++.+.+|+.....+|..+..+.+.....-....-+..+-.++.+++..||+.++..+..+..+. .-..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 44557777777768899999999999999876543210011223445555668999999999999999875221 0000
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--cccchhHHHHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAV--DVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~--~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
++ ....+..+-+.+....++.+++..+.+++.++... ........-++-.|+..|.+.++-++..|..
T Consensus 145 ~~----------~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 145 VL----------DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HH----------HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred HH----------HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 11 01234555565555578899999999999996432 1112223334556788888999999999998
Q ss_pred HHHHHHhh
Q 000149 304 LIRKSCFF 311 (2037)
Q Consensus 304 ~i~~la~~ 311 (2037)
-|.++|..
T Consensus 215 ~L~~l~~~ 222 (450)
T 2jdq_A 215 ALSYLSDG 222 (450)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHCC
Confidence 88888764
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.64 E-value=0.17 Score=62.49 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC-hHHHHHHhhhhhccchhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH-LQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq-~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+.+.|++++|+.+|+++++..|++......+-.|+..+|+ ++..+...+..+...|..
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 35678999999999999999999999888888888999997 988777776655555543
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.55 E-value=0.037 Score=74.19 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...++.|...+.+.++.|+++.|..+..+|.+..+ +.+....|.++...|+.++|+..++++++-.|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 34578899999999999999999999999987753 45777889999999999999999999986321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~ 1503 (2037)
..+.++..+|.-+.+.|+ .+++++.|++|++++|+...+|+.+|.-|.++
T Consensus 75 -------------------------~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--- 124 (723)
T 4gyw_A 75 -------------------------TFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS--- 124 (723)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred -------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 115678888888877775 88999999999999999999999999876422
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1504 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
| -...|+.+|-+++...+++. ...-.+-.+....|
T Consensus 125 -----------g--------~~~eAi~~~~~Al~l~P~~~-~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 125 -----------G--------NIPEAIASYRTALKLKPDFP-DAYCNLAHCLQIVC 159 (723)
T ss_dssp -----------T--------CHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHHTT
T ss_pred -----------C--------CHHHHHHHHHHHHHhCCCCh-HHHhhhhhHHHhcc
Confidence 1 12368999999999887753 23334444444444
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.55 E-value=0.1 Score=56.01 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|+..+.+.++.|.++.|.....+|.+.. .+.+....|.++...|+..+|+..++.++...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 446789999999999999999999999988775 4467788899999999999999999988653210
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
.+.++..+|......++ .+.....|.++.+++|....+|+.+|..|.+.-
T Consensus 72 -------------------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--- 121 (184)
T 3vtx_A 72 -------------------------SAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMG--- 121 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred -------------------------hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC---
Confidence 13345555665555444 677777888888888888888888877653220
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
-...|+..|-+++...+.+
T Consensus 122 -------------------~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 122 -------------------EHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp -------------------CHHHHHHHHHHHHHHCTTC
T ss_pred -------------------CchhHHHHHHHHHHhcchh
Confidence 0125777777777766554
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.51 E-value=0.1 Score=58.79 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=112.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......|.|..|+-+++..+..... ....+..|..+|...++++........ ...+. ..
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS------------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6788889999999999999997764211 134677899999999999988887652 11121 12
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.....+...|+|++|..+|+++++ ..|.+......+-.|+...|+++....+.+......|.... .......+....
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-VALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHc
Confidence 234567899999999999999999 77877777788888999999999888777765554443222 223445677889
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+...+++...
T Consensus 189 g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 189 REYVPARQYYDLF 201 (252)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999887777654
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.50 E-value=0.32 Score=55.17 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=114.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hcc---CCh---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS---LSL--- 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~---~~l--- 1117 (2037)
..|...+..|.|..|+-+++..+...+. ....+..|..+|..+++++........ ... +..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 4677888999999999999998764321 113567889999999999988777642 111 122
Q ss_pred --hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1118 --QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1118 --~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
......+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+..++ ...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~-~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHH
Confidence 345567899999999999999999999999888888899999999999998888777666665443333332 25566
Q ss_pred cCChhhHHHHhhcc
Q 000149 1196 LGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~ 1209 (2037)
.++|+...+++...
T Consensus 155 ~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 155 NKEYVKADSSFVKV 168 (272)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888887766554
No 66
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.49 E-value=1.2 Score=60.09 Aligned_cols=509 Identities=13% Similarity=0.069 Sum_probs=251.8
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHH-HHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIK-CIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~-~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2037)
.+++|-.+--+|.||..-...|- .|+.+.+ |-+|+ +...+-+-..-+..+ +..+|.+.......
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a---------lt~i~~g~~~~~~~ 284 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDE---AKARFTDQIDEYIKDKLLAPDMESKVRVTVA---------ITALLNGPLDVGNQ 284 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH---------HHHHHSSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHhccCChHhHHHHHHH---------HHHHhcCCHHHHHH
Confidence 34555556666777766665552 2444442 43333 122222222233333 33445544221111
Q ss_pred -h-hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 237 -N-ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 237 -~-~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
. .+-++..+-+ +...+|+.+++-.++.++.++........+.....=.|+.-|...+..+|..|..=+++++.....
T Consensus 285 ~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 285 VVAREGILQMILA-MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 0 1345666665 445678889999999999986544444444444445577777788888999888877777542211
Q ss_pred cCc-ccccchhhhhhhhhhHHHHHhhcCc---hHHHHHHHHHHhCCChHHHHHhh---cccccchhhhcccc-Ch-hHHH
Q 000149 315 GGC-ELLVSKAVLICNELFDYLSVRLASR---PIMVREFAEAAFGVETEELVKKM---IPAVLPKLVVSQQD-ND-QAVN 385 (2037)
Q Consensus 315 ~~~-~l~~~~~~~~~~~l~~~~~~~l~~~---p~~~~~~~e~ll~~~~~~fL~~~---~~~~LP~LVl~~~~-~~-~~~~ 385 (2037)
.+. .-+..... ..+.+.+++-|.+. +...+.-++.|.-++.+.-.+.. ..-++|.||-.-+. |. ..-.
T Consensus 364 d~~~~~~~~g~i---~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~ 440 (810)
T 3now_A 364 DAAIRPFGDGAA---LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYG 440 (810)
T ss_dssp TTSCCSSTTTHH---HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred CccccchhhccH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence 111 00111111 24445555555543 33333333333333332222221 13478888864221 21 1123
Q ss_pred HHHHHHHHcCCC-----------------------------------chhHHhhhHHHHHHHHhccccH---HHHHHHHH
Q 000149 386 IINELAKCLNTD-----------------------------------MVPLIVTWIPKVLAFALHQADE---RRLLSALE 427 (2037)
Q Consensus 386 ~i~~ia~~~~~~-----------------------------------~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l~ 427 (2037)
.+..+++....+ .+.++....-..|..++..+++ ++...+|.
T Consensus 441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333343333211 0233334455566677766554 45556665
Q ss_pred HHHhhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
-+....+ .-+.++. ..+|.++ .|+ ..++. +.+ +. ...++..++. +.++-..|-.....|.+..+-.
T Consensus 521 NLA~d~~-~r~~Vv~~Gaip~Lv-~LL---~s~~~-~~k-~~--Aa~AL~nL~~---~~~p~~~~~~~~~~~aIppLv~- 587 (810)
T 3now_A 521 AVCGLKE-LRGKVVQEGGVKALL-RMA---LEGTE-KGK-RH--ATQALARIGI---TINPEVSFSGQRSLDVIRPLLN- 587 (810)
T ss_dssp HHHTSHH-HHHHHHHTTHHHHHH-HHH---HSSCH-HHH-HH--HHHHHHHHHH---HSCHHHHTTTHHHHHTHHHHHH-
T ss_pred HHcCCHH-HHHHHHHCCCHHHHH-HHH---ccCCH-HHH-HH--HHHHHHHHhc---CCChhhhhcchhhhcHHHHHHH-
Confidence 5543211 2223333 3456665 443 33332 222 11 2334443332 2221112211234565555543
Q ss_pred hcCCC-ChHHHHHHHHHHHHHHHHh---ccc-c-ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000149 507 MLHAE-DLSLQKQALKRIEILIEMI---GSH-L-TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2037)
Q Consensus 507 l~~~~-~~~~k~~~l~sl~~li~l~---g~~-v-~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2037)
+++++ +...+..++.+|..|...- ... + ..+.|++..+|.+. .+.++..|+.+...++.. ++....+
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~-----~~~~~~~ 660 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMS-----EDVIKMF 660 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTS-----HHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----hHHHHHH
Confidence 34433 4444556777776654321 111 1 24679999988863 677888888777665542 2223333
Q ss_pred H--HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHH
Q 000149 581 I--SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLL 658 (2037)
Q Consensus 581 l--~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~ 658 (2037)
+ ...+..|+.+++.. ...+++.|...|-.|-..+....+..+.. ...+.
T Consensus 661 v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s~~~~~~ii~~--------------------------~g~I~ 711 (810)
T 3now_A 661 EGNNDRVKFLALLCEDE---DEETATACAGALAIITSVSVKCCEKILAI--------------------------ASWLD 711 (810)
T ss_dssp HSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHCHHHHHHHHTS--------------------------TTHHH
T ss_pred HhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHHH--------------------------cCCHH
Confidence 3 23566777777643 23467778888887766444333211110 01233
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc-
Q 000149 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG- 737 (2037)
Q Consensus 659 ~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG- 737 (2037)
.+++-+.+.+..|+..|+.-|..+.....+....++.. +++..|+.-| . ..+ ..+.+|...+.+||-
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~------G~i~~L~~LL-~---~~d--~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET------DIMELLSGLG-Q---LPD--DTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS------THHHHHTTSC-C---CTT--STTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCHHHHHHHH-h---Ccc--cCcHHHHHHHHHHHHH
Confidence 44566678899999999999999988655433333222 2444433322 2 111 123577777777764
Q ss_pred --ccCccCccc
Q 000149 738 --ALGAVDPAK 746 (2037)
Q Consensus 738 --~IGalDp~r 746 (2037)
..|.+||+.
T Consensus 780 ll~~g~~~~~~ 790 (810)
T 3now_A 780 AERYRIIERSD 790 (810)
T ss_dssp HHHHHTC----
T ss_pred HHhCCCccCCC
Confidence 568888866
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.47 E-value=0.034 Score=62.03 Aligned_cols=189 Identities=9% Similarity=-0.033 Sum_probs=116.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~---- 1116 (2037)
...++....+.|.|..|+-+++..+... |. ....+..+..+|...++++........- ..+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 93 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KE-------DAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93 (243)
T ss_dssp ----------------CCTTHHHHHTTC-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH
Confidence 3467888899999999999999977632 21 1356778999999999999888876521 1121
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.......+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|.... .......+....
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-ARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHc
Confidence 1223456789999999999999999999998888888889999999999888877766554454322 233445677889
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSK 1252 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR 1252 (2037)
|+|+...+++...-.. .+........+|.++ ...++..+..+.++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQ------DPGHADAFYNAGVTY--AYKENREKALEMLDKAI 220 (243)
T ss_dssp TCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------CcccHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 9999887777654321 011122333444433 45667666666555443
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.45 E-value=0.16 Score=61.65 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
....+|...|.+..+.|+++.|...+.++... +. ..+....|+++...|+..+|+..+++++.-
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667899999999999999999988877543 22 236667899999999999999999998763
No 69
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.40 E-value=0.84 Score=63.09 Aligned_cols=392 Identities=13% Similarity=0.110 Sum_probs=177.0
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHhhhcccchhHH
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA-ADDPLILETLLESTAELMMAVDVHSQHFL 280 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~eTll~~~~~i~~~~~~~~e~~~ 280 (2037)
++=..|+|+...+.++.+. -..........++..+ -.+.. ..+|.|++|.+.++|+...-...+.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~---------~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEH---------FGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC---------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH
T ss_pred CcHHHHHHHHHHHHHHHhh---------cChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4556789988888885411 1111112223344422 22332 13799999999999998654444457777
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh---hcCchHHHHHHHHHHhC-C
Q 000149 281 FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAFG-V 356 (2037)
Q Consensus 281 ~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~~p~~~~~~~e~ll~-~ 356 (2037)
-++=.|+..|+ +-|+..|..-|.++|+.+... +.++...+.+.+...+.+. --.++...+.++. +++ +
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~----l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~-i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQ----LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGK-LMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-HHHhC
Confidence 77777888883 778999999999999776532 3345444444444443331 2234455555554 333 2
Q ss_pred ChHH---HHHhhcccccchhhhcccc---C----hhHH---HHHHHHHHHcCC-------------CchhHHhhhHHHHH
Q 000149 357 ETEE---LVKKMIPAVLPKLVVSQQD---N----DQAV---NIINELAKCLNT-------------DMVPLIVTWIPKVL 410 (2037)
Q Consensus 357 ~~~~---fL~~~~~~~LP~LVl~~~~---~----~~~~---~~i~~ia~~~~~-------------~~~~l~~~~~~~Il 410 (2037)
+.++ ++....+.++..+-...+. + .... ..|-.+...++. .+.+.+..-++- +
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-l 696 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPI-F 696 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHH-H
Confidence 2222 2323322233222111110 1 1112 233333333332 122323222222 2
Q ss_pred HHHhc-c-ccHHHHHHHHHHHHh---hcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCC
Q 000149 411 AFALH-Q-ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGN 485 (2037)
Q Consensus 411 a~ll~-~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (2037)
-.++- . .+.+...++..++.. ..+.+ +...+|.++.-|+..+..... ..+...+..+.+.....
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~----~~p~l~~~~~~l~~~~~~~~~-------~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAITNLRSS----FQPMLQDLCLFIVASFQTRCC-------APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHC------CTHHHHHHHHHHHHCC--CC-------HHHHHHHHHHHTTCCC-
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCC
Confidence 22332 1 123333444433332 22211 122345555333322221111 01112222222222222
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCC------CChHHHHHHHHHHHHHHHHhcccc--ccc-hHHHHHHHHHHhc--CCCc
Q 000149 486 EDLPGFLRNHFVGLLNSIDRKMLHA------EDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLMHAIN--KESL 554 (2037)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~------~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~saL~--~~~L 554 (2037)
+...+.+.+-+-.++..+=..+... .....++..+.=+..+++.+-.++ ++. .+.|+-+...+|. .++-
T Consensus 766 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~ 845 (971)
T 2x1g_F 766 EGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGA 845 (971)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHH
Confidence 2233333333333332211111110 122334455555566666554443 355 7888888888874 3445
Q ss_pred chhhhHHHHHHHHHhccCCCcchhhHH----HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000149 555 QCEGLSVLHFFIEQLSRVSPSSTKHVI----SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2037)
Q Consensus 555 ~~~~l~~W~~fv~~L~~~~~~~l~~ll----~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2037)
...++++|..++.. .. ..+.+..++ ..++..++.-+. ...+....+.+..+|..|+..+.+....++..
T Consensus 846 ~~s~~~fl~~~i~~-~~-~~~~~~~~~~~~g~~l~~~l~~~~~--~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~ 918 (971)
T 2x1g_F 846 IRNSIQFLTHFVMQ-SR-NHAHVTEVVLATGEQTLYTAMMCVG--YLTPRSQVDKFADILLAMNRKYAAEMAVWMKS 918 (971)
T ss_dssp HHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHHHHHHH--TTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CC-chHHHHHHHHHhHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 56789999998776 21 122333333 222323322221 11222334567788999988888777666653
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.36 E-value=0.13 Score=57.29 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHH----------------HHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHME----------------KAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE----------------~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
.+.++.-+....+.|.++.|...+.++....+ +.+... .|.++...|+.++|+..++++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45688899999999999999999999877653 345555 899999999999999999999863
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1411 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
.| . .+.++..+|.-+...|+ .++++..|.++++++|....+|
T Consensus 84 ~p-------------------~-----------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 84 AP-------------------N-----------------NVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp CT-------------------T-----------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CC-------------------C-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH
Confidence 22 1 14467777777777776 7899999999999999999999
Q ss_pred HHHHhhhH
Q 000149 1491 FYMAKYCD 1498 (2037)
Q Consensus 1491 ~~la~y~d 1498 (2037)
+.+|..|-
T Consensus 126 ~~lg~~~~ 133 (208)
T 3urz_A 126 IFLGNYYY 133 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 71
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.34 E-value=0.72 Score=59.03 Aligned_cols=148 Identities=9% Similarity=0.030 Sum_probs=92.1
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhcc-cHHHHHHHHHHHhHhhhhh--hhh
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNK-RKAIRDAFCTQIGYFLQDT--VLS 224 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~-~r~vR~a~~~~~~~~~~~~--~~~ 224 (2037)
.+++.|..+ +.+++..++..|++++.+.. .. ..+. ...+.-|-.+|.++ +..||..++..+..+.... ...
T Consensus 91 ~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~--~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 91 QMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQ--AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHH--TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355666554 57899999999999998753 21 1111 11223333344776 8999999999999865210 100
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHH
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNAS 302 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~ 302 (2037)
.+.. ...+..+.+.+. ..|+.+++..+.+++.|........+.+. -++-.|+..|.++++.++..|.
T Consensus 168 ~~~~----------~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 168 VVVD----------ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp HHHH----------TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHH----------CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 1111 112333444333 36889999999999999542111111111 1345588888888999999999
Q ss_pred HHHHHHHhhh
Q 000149 303 RLIRKSCFFH 312 (2037)
Q Consensus 303 ~~i~~la~~~ 312 (2037)
.-|.++|...
T Consensus 237 ~~L~~L~~~~ 246 (530)
T 1wa5_B 237 WTLSNLCRGK 246 (530)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999998764
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.66 Score=57.49 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHhhcCHHHHHHHHHHHHcc---------CCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQM---------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~---------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
.+...|+.++|+.+|+++++. +|.......++=.++..+|+++....+.+.
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 356789999999999999764 333333333455577788888877665543
No 73
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.28 E-value=0.47 Score=61.04 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=69.4
Q ss_pred hhcccHHHHHHHHHHHhHhh---hhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 199 LLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
+.+.|..++..+...+..++ .++-++.+.. ..++-.+-+.+...+++.++....-+++.|....+.+
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~----------~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIR----------AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH----------TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH----------CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 37888888888888887766 1122222222 2245566666767788999998888888884332222
Q ss_pred chhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 276 SQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 276 ~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
.+.+. -++=.|+..|.++++-++-.|..-|.+||...
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 22221 13456889999999999999999999997543
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.26 E-value=0.23 Score=54.21 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=108.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......|.|..|+.+++..+..... ....+..+..+|...++.+........ ...+. ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPK------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 5788889999999999999997764321 134567888999999999887777542 11121 12
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1119 DELLSNKKS-GNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1119 ~qil~~E~~-G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
.....+... |+|++|..+|+++++ ..|.+......+-.|+...|+++....+.+......|.... .......+.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP-AFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHH
Confidence 234566788 999999999999998 55666666777888899999999887777665554454322 22344567778
Q ss_pred cCChhhHHHHhhcc
Q 000149 1196 LGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~ 1209 (2037)
.|+|+.-.+++...
T Consensus 160 ~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 160 AGQLGDADYYFKKY 173 (225)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 89998877766543
No 75
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.22 E-value=2.4 Score=57.25 Aligned_cols=150 Identities=7% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhhc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSLF 227 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~~ 227 (2037)
+.+.++|. ....+|+..++.+|..|..+......+.....-+..|-.+|. +.+..+|..++..+..+-.+. ....++
T Consensus 153 p~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 33455554 345677888888888887765422111111122333223334 448999999999998853111 011111
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
. ...+..+.+.+ ...|+.+++..+.+++.|+.......+.+ .-++-.|++.|.++|.-++..|..-+
T Consensus 232 ~----------~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 232 K----------SGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp H----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred H----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12344555533 34578899999999999965422222222 12455688999999988888888888
Q ss_pred HHHHhh
Q 000149 306 RKSCFF 311 (2037)
Q Consensus 306 ~~la~~ 311 (2037)
..+|..
T Consensus 301 ~~La~~ 306 (780)
T 2z6g_A 301 QILAYG 306 (780)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777653
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.22 E-value=0.08 Score=61.38 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-----hccC----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSL---- 1115 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-----r~~~---- 1115 (2037)
+.+.....-|.|..|+.+++..+..... ++. .....+..|..+|...++++........ ....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE--DLK------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc--cHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 5688899999999999999998765221 110 0113566888999999999887776431 1111
Q ss_pred ---ChhHHHHHHHhhcCHHHHHHHHHHHHccCC
Q 000149 1116 ---SLQDELLSNKKSGNWAEVFTSCEQALQMEP 1145 (2037)
Q Consensus 1116 ---~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p 1145 (2037)
........|...|+|++|..+|+++++..+
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 112234567889999999999999886543
No 77
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.11 Score=58.01 Aligned_cols=143 Identities=6% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccC-------
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSL------- 1115 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~------- 1115 (2037)
.++......|.|..|+-+++..+... . + ...+..+..+|..+++.+........ ...+
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~-~--~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH-K--D----------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-C--C----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh-c--c----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 57888899999999999999987653 1 1 24677889999999999987776542 1111
Q ss_pred ----ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHH
Q 000149 1116 ----SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2037)
Q Consensus 1116 ----~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~E 1191 (2037)
........+...|+|++|..+|+++++..|+. .++.++|+++......+......|.... .......
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 147 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAE-EARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHH-HHHHHHH
Confidence 11224456789999999999999999876652 3455666666666655555444443322 2223344
Q ss_pred HHHhcCChhhHHHHhhcc
Q 000149 1192 AAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1192 AAWrlg~Wd~lee~l~~~ 1209 (2037)
+....|+|+.-.+++...
T Consensus 148 ~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 556677777666655543
No 78
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.20 E-value=0.29 Score=62.65 Aligned_cols=345 Identities=13% Similarity=0.122 Sum_probs=173.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+.+.|..+ ..+++...+..|++++.... .. ..+. ...+.-|-.+|.+++ ..+|..++..+..+..
T Consensus 79 lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-------- 147 (528)
T 4b8j_A 79 MIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQ--SGVVPRFVQFLTREDFPQLQFEAAWALTNIAS-------- 147 (528)
T ss_dssp HHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHH--TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--------
Confidence 55566544 67899999999999988765 22 1111 112223333447776 9999999999988651
Q ss_pred cccccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHh-CCCCcchHHHHH
Q 000149 228 LDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQL-DNPHVTVRMNAS 302 (2037)
Q Consensus 228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L-~~~n~~~~~~a~ 302 (2037)
++. ..+. .....+..+-..+.. .++.+++..+.+++.|........+.+.- ++-.|+..| .++++.++..|.
T Consensus 148 -~~~-~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 148 -GTS-ENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp -SCH-HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred -CCH-HHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHH
Confidence 110 0000 001245555564544 68899999999999995322111122211 355688888 678899999999
Q ss_pred HHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC-chHHHHHHHHHHhCC--ChHHHH-Hhhcccccchhhhccc
Q 000149 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS-RPIMVREFAEAAFGV--ETEELV-KKMIPAVLPKLVVSQQ 378 (2037)
Q Consensus 303 ~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~e~ll~~--~~~~fL-~~~~~~~LP~LVl~~~ 378 (2037)
.-|.++|........ .....+.+.+++-|.+ .|......|..|-.+ ..++.. .....-++|.||-.=+
T Consensus 225 ~~L~~L~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSF--------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHCSSSCCCH--------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 999999876522111 1113455666666653 334433333222111 122222 2223356777765322
Q ss_pred c-Ch-hHHHHHHHHHHHcCCC---chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHHhhcCCChH---HHHH-hhhHHH
Q 000149 379 D-ND-QAVNIINELAKCLNTD---MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCIQTGSDNQ---EIFA-AALPAL 448 (2037)
Q Consensus 379 ~-~~-~~~~~i~~ia~~~~~~---~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~ 448 (2037)
. +. .....+..|+.....+ ...++.......|..++... .+.....+...+.+.+..+.. .++. ..+|.+
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 1 21 1223444444433322 22333344445555555554 444333444444444332322 2233 233444
Q ss_pred HHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000149 449 LDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2037)
Q Consensus 449 l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2037)
+ +++ ..++.+ .++. +..++..++.. +......+|.. .|++..|-.. +...+...+..++.+|+.|++
T Consensus 377 ~-~lL---~~~~~~-v~~~---a~~aL~nl~~~--~~~~~~~~l~~--~~~i~~L~~l-L~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 377 V-NLL---QTAEFD-IKKE---AAWAISNATSG--GSHDQIKYLVS--EGCIKPLCDL-LICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp H-HHH---HHSCHH-HHHH---HHHHHHHHHHH--SCHHHHHHHHH--TTCHHHHHHG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHH---hcCCHH-HHHH---HHHHHHHHHcC--CCHHHHHHHHH--CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 4 333 223322 1111 22334333321 12222222211 1444444332 344566778888999988887
Q ss_pred Hhc
Q 000149 529 MIG 531 (2037)
Q Consensus 529 l~g 531 (2037)
...
T Consensus 444 ~~~ 446 (528)
T 4b8j_A 444 VGE 446 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 79
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.19 E-value=0.061 Score=60.40 Aligned_cols=151 Identities=12% Similarity=0.056 Sum_probs=109.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+-+++..+... |. ..+.+..|..+|...+++|........ ...|+ ..
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-----PQ-------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-----SS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 57788889999999999999987642 21 235677899999999999988887652 12222 11
Q ss_pred HHHHHHHhh-----------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhH
Q 000149 1119 DELLSNKKS-----------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCM 1187 (2037)
Q Consensus 1119 ~qil~~E~~-----------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~ 1187 (2037)
.....+... |++++|..+|+++++..|++......+=.++..+|+++..+...+...... +. .....
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~ 155 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRS 155 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHH
Confidence 234456677 999999999999999999998888888889999999998777666543322 11 22223
Q ss_pred HHHHHHHhcCChhhHHHHhhcc
Q 000149 1188 QGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1188 ~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
....+...+|+++.-.+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3445677889998876665543
No 80
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.17 E-value=0.11 Score=58.42 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+....+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++++++-.|
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------------- 70 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-------------- 70 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 4578999999999999999999999998775 456788899999999999999999999986322
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-----------GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-----------~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
.+ +.++..+|..+... |+ .++++..|++|++++|+...+|+.+|.
T Consensus 71 -----~~-----------------~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 71 -----RY-----------------LGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -----TC-----------------HHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----Cc-----------------HHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 10 22344444444333 33 678889999999999999999999987
Q ss_pred hhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccC
Q 000149 1496 YCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2037)
Q Consensus 1496 y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g 1539 (2037)
.|... | -...|+.+|-+++...
T Consensus 127 ~~~~~--------------g--------~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 127 VYALL--------------G--------ERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHT--------------T--------CHHHHHHHHHHHHHHC
T ss_pred HHHHc--------------C--------ChHHHHHHHHHHHhcc
Confidence 65322 0 0125788888888766
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.12 E-value=0.081 Score=60.14 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHH
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAEL 1404 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L 1404 (2037)
...|...|.+..+.|+++.|...+.++....+.+ ..+.+..++..|+..+|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 4679999999999999999999999998776433 345577777778777777665
No 82
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.11 E-value=0.074 Score=57.17 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...|.+..+.|.++.|...+.++.... .+.+....+...+..++...|+..++.++...|
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~------------- 104 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------------- 104 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------
Confidence 35689999999999999999999999987664 455777889999999999999999998865321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
. ...++..+|..+...|+ .+++++.|+++++++|....+|+.+|..|.+.-
T Consensus 105 ------~-----------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g---- 155 (184)
T 3vtx_A 105 ------V-----------------YADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG---- 155 (184)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----
T ss_pred ------c-----------------chHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC----
Confidence 0 03355666776666665 788999999999999999999999998764321
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
-...|+.+|-+++...+++
T Consensus 156 ------------------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 ------------------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ------------------CHHHHHHHHHHHHHTTHHH
T ss_pred ------------------CHHHHHHHHHHHHhCCccC
Confidence 1136889999998877653
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.10 E-value=0.65 Score=64.34 Aligned_cols=376 Identities=11% Similarity=0.075 Sum_probs=192.9
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhcccccc----ccchhhHHH
Q 000149 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLFLDENA----SSRSNELKL 241 (2037)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 241 (2037)
.++..+.+.+.|...|+-.-+...|...+..+-..+. ..++..+...++.+++.-+--..|...+. .+...+..|
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3788888889998877766688889877665532221 12334444444444322222223432211 122444666
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH----HHHHHH-HHhC---CCCcchHHHHHHHHHHHHhhhh
Q 000149 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF----LLILLV-EQLD---NPHVTVRMNASRLIRKSCFFHL 313 (2037)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~----~l~~Li-~~L~---~~n~~~~~~a~~~i~~la~~~~ 313 (2037)
.+.+++ +. +++-+++.+ ++++..- .+--++ ..|. +++=-.+-+|.-.+..+++...
T Consensus 412 ~e~Rk~---------l~-~l~d~~~~l------~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 412 QEMRKK---------LK-IFQDTINSI------DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp HHHHHH---------HH-HHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHH---------HH-HHHHHHHhc------ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 664444 55 777777766 2333322 333333 3443 2223344555556666666554
Q ss_pred ccCcccccchhhhhhhhhhHHHHHhh------cCchHHHHHHHHHHhCCChHHHHHh---hcccccchhhh-----cccc
Q 000149 314 KGGCELLVSKAVLICNELFDYLSVRL------ASRPIMVREFAEAAFGVETEELVKK---MIPAVLPKLVV-----SQQD 379 (2037)
Q Consensus 314 ~~~~~l~~~~~~~~~~~l~~~~~~~l------~~~p~~~~~~~e~ll~~~~~~fL~~---~~~~~LP~LVl-----~~~~ 379 (2037)
..+... .......+++.++++.-+ ..+|..-...|+ ++| .+.+++.. .++.+|+.++- .+..
T Consensus 476 ~~~~~~--~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~-~l~-rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 476 GPDAFF--NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME-ILV-RYASFFDYESAAIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp SGGGTB--CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH-HHH-HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCT
T ss_pred cccccc--CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHH-HHHHHHhcCchhHHHHHHHHhccccccCCCh
Confidence 432221 111111245666665543 578888777776 665 34444432 23445555444 1211
Q ss_pred Ch--hHHHHHHHHHHHcCCCchhHHhhhHHHHHHHH---hcc-----ccH-------------------HHHHHHHHHHH
Q 000149 380 ND--QAVNIINELAKCLNTDMVPLIVTWIPKVLAFA---LHQ-----ADE-------------------RRLLSALEFYC 430 (2037)
Q Consensus 380 ~~--~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~l---l~~-----~~~-------------------~~~~~~l~~~~ 430 (2037)
.. .+...+..+++..+..+. +++..|+..+ +.- .+. -.+.+++..+.
T Consensus 552 ~V~~~a~~af~~f~~~~~~~L~----~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIKKQVV----NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTTTCS----SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHhh----hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 11 144788888888876554 4555566554 331 111 12677887777
Q ss_pred hhcCCCh---HHHHHhhhHHHHHHHHHhhcCCCch-HHhhhhcchhHHH---HHHhhhcCCC-CChhhhhHHHHHHHHHH
Q 000149 431 IQTGSDN---QEIFAAALPALLDELICFVDGGDSD-EINERLNRVPRVI---RKVSTVLTGN-EDLPGFLRNHFVGLLNS 502 (2037)
Q Consensus 431 ~~~~~~~---~~~~~~~~~~~l~ell~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~fl~~~~LGil~~ 502 (2037)
...+.+. .+.+...++.++..+-..+....++ +.. +.+...+ ..+++-..+. ..... ....|.-++..
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~---~~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~~ 703 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENI---ISVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASDE 703 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHH---HHHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHH---HHHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHHH
Confidence 6655433 3345666666665554333222111 111 1232333 3444433221 11111 22333333333
Q ss_pred hhhhhcC-CCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhcc
Q 000149 503 IDRKMLH-AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSR 571 (2037)
Q Consensus 503 ~~~~l~~-~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~ 571 (2037)
+-..+.. +++...+.++-.++..||..+|.++.+++|+++..|.+..+..++. .-+..-..+|+...+
T Consensus 704 il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~-~fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 704 IFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELV-DVLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHH
Confidence 3222211 2346678889999999999999999999999999999766655532 223344446666543
No 84
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.09 E-value=0.09 Score=51.95 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|...+......|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP----------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------
Confidence 3456789999999999999999999999987664 345777889999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
. .+.++..+|......|+ .+++.+.|.++++++|....+|+.+|..+.+
T Consensus 78 --------~-----------------~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 --------A-----------------YSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred --------c-----------------CHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 03456677777766665 7889999999999999988899888877643
No 85
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.08 E-value=0.21 Score=56.65 Aligned_cols=93 Identities=5% Similarity=0.042 Sum_probs=64.3
Q ss_pred HHcCChHHHHHHHHHHhhcCCC-hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000149 1360 RLAGHYETATRAILEAQASGAP-NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~~p-~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 1438 (2037)
.+.|.++.|...+.++....++ ......+.+....++..+|+..++..+...+
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------- 208 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT-------------------------- 208 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH--------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc--------------------------
Confidence 4457788888777666544322 2334467777788888889998888754210
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1439 SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1439 ~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
...+..+.++..+|......|+ .+++...|+++++++|..
T Consensus 209 ------~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 209 ------SLAEHLSETNFYLGKYYLSLGD--LDSATALFKLAVANNVHN 248 (275)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTT
T ss_pred ------cccccccHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCchh
Confidence 0112336778888888877775 889999999999999953
No 86
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.07 E-value=6.5 Score=53.05 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=88.1
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
..+.+.+.|-.+ +++++-++...|+.+ .+..+. .+-|-.-+ .+|.+++..||+.+..++..+-.+.--...+
T Consensus 116 ~i~~lv~~L~~~-~~~~r~~a~~~l~~~-----~~~~i~-~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 116 AHPTNVQRLAEP-SQMLKHAVVNLINYQ-----DDAELA-TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ----------CC-SCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cHHHHHHHhcCc-cHHHHHHHHHHHHhh-----hHHHHH-hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 334455666554 677887777766643 122222 23333333 3458999999999999998864211100000
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIR 306 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~ 306 (2037)
. ....++..+-+.+...+|+.+++....++..+.........+.. -++-.|++.|.++++-++..|..-|.
T Consensus 188 ~--------~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 188 M--------RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp T--------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H--------hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 01246667777776677999999999999887432211111111 13456899999999999999999999
Q ss_pred HHHhhh
Q 000149 307 KSCFFH 312 (2037)
Q Consensus 307 ~la~~~ 312 (2037)
++|...
T Consensus 260 nLa~~~ 265 (780)
T 2z6g_A 260 NLLLHQ 265 (780)
T ss_dssp HHHHHS
T ss_pred HHhCCC
Confidence 998764
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.00 E-value=0.23 Score=55.41 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+.+..+.|.++.|...+.+|....+. .+....|.++...|+..+|+..++++++..|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------------- 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--------------- 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---------------
Confidence 46777899999999999999999999877654 4677899999999999999999999986322
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--hHHHHHHHHhhhHHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM--WEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~--weK~~~~la~y~d~l 1500 (2037)
.++ .-....+.++..+|......|+ .+++++.|++|++++|. ...+|+.+|..|-..
T Consensus 108 ----~~~----------~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 108 ----GNA----------TIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp ----TCH----------HHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----CcH----------HHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 100 0112456788999999887776 89999999999999999 899999999876544
No 88
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.99 E-value=0.084 Score=51.23 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+......|.++.|...+.++.... .+.+....|.+++..|+..+|+..++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------------
Confidence 35679999999999999999999999987664 456778889999999999999999999876311
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++.+|....+|+.+|+..
T Consensus 70 ------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 ------D-----------------WGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------c-----------------cHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 13456667776666664 78899999999999999998888887653
No 89
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.96 E-value=0.12 Score=51.42 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|...|....+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++++++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP----------- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------
Confidence 4557789999999999999999999999987764 345777889999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
. .+.++..+|.-....|+ .+++++.|.++++.+|....+++.+|..+.
T Consensus 82 --------~-----------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 82 --------T-----------------FIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred --------C-----------------chHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 0 13456666766666654 788999999999999999999998887654
No 90
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.91 E-value=2 Score=54.97 Aligned_cols=108 Identities=7% Similarity=0.001 Sum_probs=73.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhh---hhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 194 CIEFLLLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
.|..+ .+.|..++..+...++.++ .|+-++.+...| .+-.+-+.|...+++.+|+-..-+++.|..
T Consensus 62 ~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G----------~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 62 IVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAG----------LIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT----------HHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC----------CHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 44445 9999999999999998876 222222222222 355666666677889999988888888843
Q ss_pred hhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 271 AVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 271 ~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
+.+.+...+. -++=.|+..|.++++-++-.|..-|.+||...
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 2222222221 13456899999999999999999999997543
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.89 E-value=0.013 Score=62.18 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=82.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000149 1356 AKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~ 1433 (2037)
+.+.|..|.++.|..++.++.... .+...+..|+++...|+.++|+..++++++..|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 445677788889999888886543 233566789999999999999999999886321
Q ss_pred CCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
..+.++..+|......|+ .++++..|++|++++|+...+|+.+|..|-
T Consensus 63 ---------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 63 ---------------RDPKAHRFLGLLYELEEN--TDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 115578888888877775 889999999999999999999999998764
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.81 E-value=0.11 Score=54.66 Aligned_cols=151 Identities=10% Similarity=0.017 Sum_probs=110.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l~ 1118 (2037)
.++......|.|..|+.+++..+... | .....+..+..+|...++++......... ..++ ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-----A-------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-----S-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-----c-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56788889999999999998865432 1 12356778999999999999887776521 1121 12
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|... ........+....|+
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCC
Confidence 2345678899999999999999999999888888888999999999988877776655445432 223344567788899
Q ss_pred hhhHHHHhhc
Q 000149 1199 WDLMDEYLSG 1208 (2037)
Q Consensus 1199 Wd~lee~l~~ 1208 (2037)
|+...+++..
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887766543
No 93
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.77 E-value=8.1 Score=50.66 Aligned_cols=149 Identities=9% Similarity=0.064 Sum_probs=92.5
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2037)
+.+.++|.+ ...+|+..++..|.++..+...- ..... ...+..|-.+|.+ ++..+|.++++++..+-.+. ....+
T Consensus 17 ~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 17 PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 335566664 46689999999999999887522 11111 1233333333354 48999999999998764211 11112
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+ ...|+.+++..+.+++.|........+.+ .-++-.|++.|.++|+-++..|..-
T Consensus 95 ~~----------~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 95 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp HT----------TTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 21 12344455533 34678899999999999854321122111 1245569999999999888888888
Q ss_pred HHHHHhh
Q 000149 305 IRKSCFF 311 (2037)
Q Consensus 305 i~~la~~ 311 (2037)
|.++|..
T Consensus 164 L~~La~~ 170 (644)
T 2z6h_A 164 LQILAYG 170 (644)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8888753
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.75 E-value=0.1 Score=69.87 Aligned_cols=150 Identities=11% Similarity=0.103 Sum_probs=115.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.|+..-.+-|.|..|+-++++.+.-..+ ....+..|..+|..+++.|.+.-.... ...++ ..
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVFPE------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5788889999999999999998765321 135678899999999999988777542 22222 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|..+|+++++..|++.+.+.++=.++.++|+++..+...+..+...|+...-+. ....+-..+|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~-~L~~~l~~~g~ 160 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC-NLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh-hhhhHHHhccc
Confidence 34567889999999999999999999999999988889999999999988887776665665433332 33456778999
Q ss_pred hhhHHHHhh
Q 000149 1199 WDLMDEYLS 1207 (2037)
Q Consensus 1199 Wd~lee~l~ 1207 (2037)
|+...+...
T Consensus 161 ~~~A~~~~~ 169 (723)
T 4gyw_A 161 WTDYDERMK 169 (723)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766543
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.73 E-value=0.064 Score=63.44 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=109.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc--cCChh-HH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK--SLSLQ-DE 1120 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~~l~-~q 1120 (2037)
..++....+-|.|..|+-+++. .. ..+.+-.+..+|..++++|........-. .++-. -+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~~------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----GD------------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----CC------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 4677888999999999999876 11 12466788999999999999888865321 22211 11
Q ss_pred H-----HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1121 L-----LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1121 i-----l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
+ ..+...|++++|..+|+.+++..|++.....++-.|+..+|+|+......+..+...|+....+..+ ..+.+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l-~~~~~~ 246 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL-VVLSQH 246 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH
Confidence 1 1123459999999999999999999998888889999999999998888887776667655544444 357788
Q ss_pred cCChhh-HHHHhhc
Q 000149 1196 LGRWDL-MDEYLSG 1208 (2037)
Q Consensus 1196 lg~Wd~-lee~l~~ 1208 (2037)
.|+++. ..+++.+
T Consensus 247 ~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQ 260 (291)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 999964 5666554
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.72 E-value=8.3 Score=54.46 Aligned_cols=331 Identities=15% Similarity=0.088 Sum_probs=191.7
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHH-HHHHHhhCCChHHHHHHHHHhccCChhHHHHHHH
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSF-LMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNK 1125 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~-L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E 1125 (2037)
+++=+.-|.|+.||-.+|.-+.+.+... ....++. |+...-..|-..+++-+.+.- .....+-....+
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs----------~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFS----------EHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCccc----------ccHHHHHHHHHHHHHhChhhHHHHHHHhh-hccHHHHHHHHH
Confidence 3333478899999999999774422000 0112222 333333334444555554433 344555566778
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHH-HHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNC-LLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~C-L~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee 1204 (2037)
+.|++++|.++|+++- ... .-+.- +.++|+|+....+++.... | .-|+.+| .|-=..|+|+.--+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~---~A~~VLie~i~nldrAiE~Aervn~--p---~vWsqLA-KAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNT---SAVQVLIEHIGNLDRAYEFAERCNE--P---AVWSQLA-KAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHH---HHHHHHHHHHhhHHHHHHHHHhcCC--H---HHHHHHH-HHHHhCCCHHHHHH
Confidence 9999999999999852 111 11222 3378999998888875421 2 3344332 33334788866544
Q ss_pred HhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhh-HHhhhHHHHHhhhHHHH
Q 000149 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDS-YTRAYPFIVKLHLLQEL 1283 (2037)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eS-y~r~y~~l~kLh~L~EL 1283 (2037)
....++ +.+....++.+ +.+.++.++.-+.+.++|...-.+- .++ ..-+| -++..+.|+
T Consensus 1127 sYiKAd-----------D~say~eVa~~--~~~lGkyEEAIeyL~mArk~~~e~~----Idt~LafaY---AKl~rleel 1186 (1630)
T 1xi4_A 1127 SYIKAD-----------DPSSYMEVVQA--ANTSGNWEELVKYLQMARKKARESY----VETELIFAL---AKTNRLAEL 1186 (1630)
T ss_pred HHHhcC-----------ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhccccc----ccHHHHHHH---HhhcCHHHH
Confidence 333222 12233344444 4556788888888888876431110 011 11111 233455566
Q ss_pred HHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcC
Q 000149 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2037)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag 1363 (2037)
+++.+ . .. ...+. .|-.|+...+..-.... -..+ +..|.+.|+.--+.|
T Consensus 1187 e~fI~---~---------~n---~ad~~-~iGd~le~eg~YeeA~~---~Y~k------------A~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1187 EEFIN---G---------PN---NAHIQ-QVGDRCYDEKMYDAAKL---LYNN------------VSNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHh---C---------CC---HHHHH-HHHHHHHhcCCHHHHHH---HHHh------------hhHHHHHHHHHHHhC
Confidence 65532 1 11 12233 47777776665433322 1221 357999999999999
Q ss_pred ChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000149 1364 HYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2037)
Q Consensus 1364 ~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~ 1443 (2037)
.++.|..+..+| +.+.+-.|.+-..-..|+.+.|.......+.
T Consensus 1236 e~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv---------------------------------- 1278 (1630)
T 1xi4_A 1236 EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---------------------------------- 1278 (1630)
T ss_pred CHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc----------------------------------
Confidence 999999999988 3455545555556667777777775443211
Q ss_pred chhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1444 ~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
.+..+.-+++|+...|. .++++..|.+++.+++.+.-.|..+|..|-
T Consensus 1279 ------~~deLeeli~yYe~~G~--feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1279 ------HADELEELINYYQDRGY--FEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred ------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 02233456677766665 889999999999999887777777765553
No 97
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.69 E-value=0.19 Score=49.01 Aligned_cols=111 Identities=16% Similarity=0.183 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+....+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------------
Confidence 6789999999999999999999999987664 345677889999999999999999998875211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. ...++..+|......++ .+++.+.|.++.+.+|....+++.+|..+
T Consensus 75 -----~-----------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 75 -----N-----------------NAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp -----T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----c-----------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 0 02345566666666554 78899999999999999988888887654
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.64 E-value=0.09 Score=55.78 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=93.2
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
+...+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------- 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---------- 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------
Confidence 34567889999999999999999999999998775 456778899999999999999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
..+.++..+|.-+...|+ .+++++.|+++++++|+...+|+..|.
T Consensus 77 --------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 77 --------------------------KYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 014567777877777665 889999999999999999888877663
No 99
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.16 Score=51.06 Aligned_cols=111 Identities=11% Similarity=-0.039 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
.+..|...+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..++.++...|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------
Confidence 467899999999999999999999999887654 46777889999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHHhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMAKY 1496 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~------~~weK~~~~la~y 1496 (2037)
. .++++..+|.-+...|+ .++++..|+++++++ |.....+..+++.
T Consensus 70 ------~-----------------~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------N-----------------FVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 14467777777766665 788999999999999 7666666666544
No 100
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.52 E-value=0.19 Score=51.16 Aligned_cols=113 Identities=17% Similarity=0.048 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
......|...|..+.+.|.++.|...+.++....+ +.+....|..+...|+..+|+..++.++...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------- 96 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------- 96 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--------
Confidence 45578899999999999999999999999987754 35677789999999999999999998876311
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. .+.++..+|..+...++ .+++.+.|+++++++|.....+..+++.
T Consensus 97 -----------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 97 -----------G-----------------DVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -----------C-----------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------c-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 0 03456667776666665 7889999999999999988887766654
No 101
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.47 E-value=0.23 Score=56.80 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=109.5
Q ss_pred ChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
+|.++-+.+.++|-+.....|+-+...+|..+.++...+. ..-....+.+|-..+.|++..||.+++.++..++++.
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-- 129 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-- 129 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--
Confidence 3555666666666435677788899999999998766442 1111233445555569999999999999999987321
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHHhCCCCcchHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMN 300 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~~~~~ 300 (2037)
.-..++..+..++.. ++|++++.++..++.+..... .....+...+=.|+..|..+++-||..
T Consensus 130 -------------~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 130 -------------SLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195 (242)
T ss_dssp -------------CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 124577788887764 689999999999999754431 122334445556999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000149 301 ASRLIRKSCFFHL 313 (2037)
Q Consensus 301 a~~~i~~la~~~~ 313 (2037)
|..-|-.+++.-.
T Consensus 196 A~~~l~~l~~~vg 208 (242)
T 2qk2_A 196 SAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987763
No 102
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.40 E-value=3.4 Score=48.55 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--HHHHH--HHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--HMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~--~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
.+|...+.+..+.|+++.|...+.++....+... .+-.+ .++-..|+..+|+..++++++..|
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p------------- 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS------------- 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------------
Confidence 4566777777777888888777777766543332 22222 333334667777777777765321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. .+.++..+|..+...|+ .+++...|.+|++++|....+|+.+|..+
T Consensus 198 ------~-----------------~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 198 ------P-----------------TLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp ------C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0 02344445555555554 67777778888888887777777777654
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.26 E-value=16 Score=50.82 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh---c-----CChhHHHHHHHHHHHHHhhhc
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA---A-----DDPLILETLLESTAELMMAVD 273 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~d~~i~eTll~~~~~i~~~~~ 273 (2037)
.+-..|+|++..++++-+ + .....+..++..+-..+.. . .+|.++-|.+.++|+...-..
T Consensus 465 ~~W~~~eaal~algsia~----------~--~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISG----------T--MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTT----------S--SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc----------c--cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 455668999888887431 1 1111112334444433322 1 346667788899998754333
Q ss_pred ccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 274 VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 274 ~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
.+.+.+.-++-.|++.|.++|+.|+..|...|.++|+.+.+
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778878888899999999999999999999999987754
No 104
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.22 E-value=12 Score=49.08 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHH
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2037)
.-+.+-.++-.+..+++..+ |+. .--+-++..-+.|++..+|-.|-+++..+-... --+.
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~-e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---------------~~~~ 146 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNS-ELI----RLINNAIKNDLASRNPTFMGLALHCIANVGSRE---------------MAEA 146 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCH-HHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---------------HHHH
T ss_pred CHHHHHHHHHHHHHHccCCc-HHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---------------HHHH
Confidence 33444445555555544332 311 112245666679999999999999999864111 1245
Q ss_pred HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhh
Q 000149 241 LLDVIKLAFT-AADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2037)
Q Consensus 241 ~~~~~~~~~~-~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~ 313 (2037)
++..+++.+. .-.+|-|.-+...++..+.+- ..|+.. -.+=.|.+-|+.+|+.|.+.|...+..+|+...
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT---SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 6667777663 356888999999999999662 344443 334556777789999999999999999988653
No 105
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.20 E-value=0.45 Score=52.92 Aligned_cols=140 Identities=11% Similarity=-0.059 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-C--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-P--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
...|...+....+.|.++.|.....++....+ + .+....|..+...|+..+|+..++++++..|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------- 73 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------- 73 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------------
Confidence 36899999999999999999999999887654 3 4566689999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
..+.++..+|.-+...|+ .+++++.|+++++++|.....+..++..+..+-.-..
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 74 -----------------------NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----------------------SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 124567777877766665 7899999999999999877443333332222210000
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
. .| -...|+..|-+++...+.
T Consensus 129 ~-------~~--------~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 129 Q-------AG--------NIEKAEENYKHATDVTSK 149 (228)
T ss_dssp H-------TT--------CHHHHHHHHHHHTTSSCH
T ss_pred H-------hc--------cHHHHHHHHHHHHhcCCC
Confidence 0 11 124699999999998766
No 106
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.19 E-value=0.43 Score=54.51 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=86.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
......++..|....+.|.++.|...+.++....+ +.+.+..|..++..|+..+|+..++..++..|
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-------- 83 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-------- 83 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--------
Confidence 34567899999999999999999999999877642 45778899999999999999999999987432
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG------QKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~------~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
.+ +..+.++..+|.-....+ ..+.++++..|+++++.+|....++
T Consensus 84 -----------~~--------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 84 -----------ID--------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp -----------TC--------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred -----------CC--------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 11 122456677777665511 3347889999999999999876555
No 107
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.17 E-value=4.5 Score=53.02 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000149 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2037)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2037)
+.-|..++.|++..||.+|+.++..+.... . ...+.++..+.+.+. -+||.|+-..+..+++|+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-----------p--~~v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-----------P--ELMEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-----------G--GGGGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-----------h--HHHHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHh
Confidence 345566679999999999999999875210 0 111356667777554 47888999999999998532
Q ss_pred hcccchhH---HHHHHHHHHHh------------CCCCcchHHHHHHHHHHHHh
Q 000149 272 VDVHSQHF---LFLLILLVEQL------------DNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 272 ~~~~~e~~---~~~l~~Li~~L------------~~~n~~~~~~a~~~i~~la~ 310 (2037)
.....+.+ .-.++.++.++ |.+++.+.....+-+-.++.
T Consensus 210 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 210 SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 11000111 11234444443 34678888877776666654
No 108
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.17 E-value=6.5 Score=51.59 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=69.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch---hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS---NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD 273 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2037)
.+|.+++..||..++..+..+-.+. ..+. .....+..+-+.+...+|+.+++....++..+.....
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~-----------~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKE-----------ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTST-----------THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCC-----------hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3457888889999888888854111 1111 0123455666666666788898888888887643221
Q ss_pred ccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 274 VHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 274 ~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
....+.. -++-.|++.|.++++.++..|..-|.++|...
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 1111111 14456899999999999999999999998764
No 109
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.05 E-value=0.36 Score=52.83 Aligned_cols=116 Identities=12% Similarity=-0.056 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
..+..|...+..+.+.|.++.|.....+|.... .+ .+....|..+...|+..+|+..++.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456779999999999999999999999987653 34 567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
...+ ..++++..+|..+...|+ .+++++.|+++++++|....
T Consensus 116 ~~~p------------------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 116 KIDK------------------------------------NNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHST------------------------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHH
T ss_pred HhCc------------------------------------ccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHH
Confidence 6211 114567777777777765 78899999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
++..++..+..+
T Consensus 158 ~~~~l~~~~~~~ 169 (198)
T 2fbn_A 158 IRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877655
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.04 E-value=0.13 Score=54.34 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
.+....|+..|++..+.|.++.|...+.+|...+ .+.+....+.++...|+.++|+..++.+++-.|
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------- 96 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP----------- 96 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-----------
Confidence 3455678999999999999999999999998775 456788899999999999999999999886321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhccchHHHHHHHHhhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITL-YSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~-Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. -+.++..+|..+...++. ++..+. +++|++++|+...+|...++.+
T Consensus 97 --------~-----------------~~~~~~~la~~~~~~~~~--~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 97 --------T-----------------QKDLVLKIAELLCKNDVT--DGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHHCSS--SSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------C-----------------CHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 1 144677778777777763 233444 5899999999988877666654
No 111
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.38 Score=55.88 Aligned_cols=183 Identities=11% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCCChHHHHHHHHHHHH-HHHHhcccc--ccchHHHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchh-hHH
Q 000149 509 HAEDLSLQKQALKRIEI-LIEMIGSHL--TTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTK-HVI 581 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~-li~l~g~~v--~~~~pqI~a~L~saL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~-~ll 581 (2037)
.+.+-.+|+.++.+|.. +++=+...+ ..-..+++..|...|. .. ..+..++.|...|...|.. ..+. ++.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~---~~f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT---PGFSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT---TTSCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---ccccHHHH
Confidence 44567788888888777 764221222 2233588888999993 43 3688999999999988851 2476 788
Q ss_pred HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
..++..++..+. +.....++.+..-++.++. ++... .+. ..+..-+..+.
T Consensus 103 ~~llp~ll~~l~---dkk~~V~~aa~~al~~i~~--------~~~~~--~~~-----------------~~l~~ll~~l~ 152 (249)
T 2qk1_A 103 SLVFTPLLDRTK---EKKPSVIEAIRKALLTICK--------YYDPL--ASS-----------------GRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHH--------HSCTT--CTT-----------------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH--------Hcccc--ccC-----------------CcHHHHHHHHH
Confidence 888777766664 3222223333333332221 11110 010 01334455667
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcH---HHHHHHHhccCCCCchhH-HHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLKS---EDVTALINGEACSDLDVL-STLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~~---~~l~~~~~~e~~~~~~vi-~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2037)
..++|.|+.||.+++.-|..++.... +.+.. .+ ..++..|..+..+. +.+++..|.+|||
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-----------~l~~~iip~l~~~l~D~-----~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-----------YLKDEVVPIVIQIVNDT-----QPAIRTIGFESFA 216 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-----------HHTTTHHHHHHHHHTCS-----SHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-----------HHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Confidence 78889999999999999999987654 22322 23 34455555544332 3689999999999
Q ss_pred ccC
Q 000149 738 ALG 740 (2037)
Q Consensus 738 ~IG 740 (2037)
.|.
T Consensus 217 ~i~ 219 (249)
T 2qk1_A 217 ILI 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.94 E-value=0.41 Score=47.13 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------- 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------
Confidence 356789999999999999999999999987765 3456778899999999999999999998763110
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
++ ......+.++..+|......|+ .+++.+.|.++++..|+ ...+..++.....
T Consensus 71 --------~~----------~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 --------NR----------EDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp --------ST----------TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred --------cc----------hhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 00 0122346778888888777665 88999999999999984 6667777665443
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.77 E-value=0.26 Score=63.61 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.....|...|.+..+.|+++.|...+.+|.+..+ +.+....|.++...|+.++|+..++++++..+
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------ 88 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------------ 88 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------------
Confidence 4467899999999999999999999999987753 45778899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
..+.++..+|..+...|+ .+++++.|+++++++|+...+++.+|..+...-
T Consensus 89 ------------------------~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--- 139 (568)
T 2vsy_A 89 ------------------------EHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC--- 139 (568)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---
Confidence 014467777777777665 789999999999999999999999987764220
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.-+ -...|+..|-+++..++..
T Consensus 140 --------~~g--------~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 140 --------DWR--------ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp --------CCT--------THHHHHHHHHHHHHHTCCC
T ss_pred --------ccc--------cHHHHHHHHHHHHhcCCcc
Confidence 001 1236888888888887764
No 114
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.71 E-value=0.23 Score=61.35 Aligned_cols=140 Identities=9% Similarity=0.042 Sum_probs=108.7
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCccccccc
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
.++......|...+.+..+.|+++.|.....+|...++. .+....+.++...|+ ..+|+..+++++...|.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------ 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------ 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------
Confidence 345667889999999999999999999999999887654 567788999999997 99999999999863221
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
.+.++..+|.-+...|+ .++++..|++|++++|+...+|+++|..+.+
T Consensus 165 ------------------------------~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 165 ------------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 13456666666666665 5678889999999999999999999887654
Q ss_pred HHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1500 VLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1500 l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
+- . + ..|+.+|-+++...+.+
T Consensus 213 ~g--------------~-------~-~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 213 FK--------------L-------W-DNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HT--------------C-------C-TTHHHHHHHHHHHCTTC
T ss_pred cC--------------C-------h-HHHHHHHHHHHHhCCCC
Confidence 31 0 0 14888888888877665
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.69 E-value=0.28 Score=59.25 Aligned_cols=117 Identities=14% Similarity=-0.004 Sum_probs=96.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
...+..|...+....+.|.++.|.....+|....+. .+....|.++...|+..+|+..++.++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345778999999999999999999999998776532 567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
...| ..++++..+|.-+...|+ .++++..|++|++++|....
T Consensus 224 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 224 ELDS------------------------------------NNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHH
T ss_pred HhCC------------------------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHH
Confidence 6311 115577778887777665 88999999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
+|+.+|..+.++
T Consensus 266 a~~~l~~~~~~~ 277 (336)
T 1p5q_A 266 AKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877655
No 116
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.68 E-value=15 Score=47.62 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 241 LLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 241 ~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
|+.-++ +.+.+|+.++...-..+..+.+ .+.|...+++-.|..-|.++|+.+|+.|.+-+.++
T Consensus 51 ~~~vi~--l~~s~~~~~Krl~yl~l~~~~~---~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i 113 (591)
T 2vgl_B 51 FPDVVN--CMQTDNLELKKLVYLYLMNYAK---SQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI 113 (591)
T ss_dssp HHHHHH--TTSSSCHHHHHHHHHHHHHHHH---HSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHH--HhCCCCHHHHHHHHHHHHHHcc---cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 444444 4567889899988888888733 35677656666688889999999999997666555
No 117
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.66 E-value=0.35 Score=61.26 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHY-ETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~-~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
..+..|...+++....|.+ +.|...+.+|....+ +.+....|.+++..|+..+|+..++++++..|
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------- 168 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK----------- 168 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-----------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------
Confidence 4467899999999999999 999999999877753 46788899999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ-------KQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~-------~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. +.++..+|.-+...+. ...+++++.|++|++++|....+|+.+|..
T Consensus 169 -------------------------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 169 -------------------------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp -------------------------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------------------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 2344444444433200 125788899999999999999999999988
Q ss_pred hHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCC
Q 000149 1497 CDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2037)
Q Consensus 1497 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~ 1540 (2037)
|-..+.... ... .-...|+..|-+++...+
T Consensus 223 ~~~~~~~~~----------~~~----g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 223 YLSLYFNTG----------QNP----KISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHTT----------CCH----HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhc----------ccc----chHHHHHHHHHHHHHhCC
Confidence 766642210 000 123479999999998876
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.66 E-value=0.1 Score=53.63 Aligned_cols=88 Identities=14% Similarity=0.235 Sum_probs=68.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
+...+-+.|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+..+...|....-+. ....+-..+|+|
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~~~~ 97 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI-RKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHCCCH
Confidence 4566789999999999999999999999998888889999999999888877766655555444333 334567788999
Q ss_pred hhHHHHhhc
Q 000149 1200 DLMDEYLSG 1208 (2037)
Q Consensus 1200 d~lee~l~~ 1208 (2037)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (126)
T 4gco_A 98 SKAQRAYED 106 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 119
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.65 E-value=5.1 Score=45.62 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...|...+.+..+ .|.++.|...+.+|.+.+.+.+....+.++.. .|+..+|+..++.+++..+
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------- 217 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-------- 217 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--------
Confidence 3467777888888 89999999999999888888899999999999 9999999999998865210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccch
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
+.++..+|..+... ...+.+++.+.|++|++..|..
T Consensus 218 ------------------------------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 218 ------------------------------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp ------------------------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 23456666665541 1334678889999999998854
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.63 E-value=0.53 Score=47.48 Aligned_cols=111 Identities=10% Similarity=0.005 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+..|...+....+.|.++.|.....++....+ +.+....|.++...|+..+|+..++.++...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------------ 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------------ 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------
Confidence 4577899999999999999999999999877653 45778889999999999999999999876211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-----hHHHHHHHHh
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM-----WEKGYFYMAK 1495 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~-----weK~~~~la~ 1495 (2037)
..+.++..+|..+...|+ .++++..|++++++.|. ....+..+++
T Consensus 75 ------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 75 ------------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 014467777877777665 78899999999999987 4444444443
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.60 E-value=0.43 Score=49.56 Aligned_cols=112 Identities=12% Similarity=-0.017 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------------ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK------------ 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------
Confidence 456789999999999999999999999987765 345677889999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++++|....++..++..
T Consensus 79 -------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 -------K-----------------YIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp -------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -------c-----------------cHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 13456677777666665 8889999999999999888887665543
No 122
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.48 E-value=1.5 Score=51.53 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1348 VGNCWLQYAKLCRL-------AGHY-------ETATRAILEAQA-SGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1348 ~~~~WL~~AklARK-------ag~~-------~~A~~aLl~a~~-~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
....|+.++.+... .|.+ +.|...+.+|.. ..+ +.+.+.+|.++...|+.++|....+++++.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 36789999998764 4776 889999999987 443 346778999999999999999999998762
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1411 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
. |.+ . ..++..+|.++...|. .+++.+.|.+|++..|.....|
T Consensus 129 ~-------------------p~~--------------~--~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 129 E-------------------DID--------------P--TLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp S-------------------SSC--------------T--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHH
T ss_pred c-------------------ccC--------------c--cHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHH
Confidence 1 110 0 1167778888877665 7889999999999998776666
Q ss_pred HHHHh
Q 000149 1491 FYMAK 1495 (2037)
Q Consensus 1491 ~~la~ 1495 (2037)
..+|.
T Consensus 172 ~~~a~ 176 (308)
T 2ond_A 172 VTAAL 176 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.36 E-value=0.73 Score=50.31 Aligned_cols=132 Identities=8% Similarity=-0.090 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
-.+...+....+.|.++.|...+.++.. ..+.+....|..++..|+..+|+..++.++...+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----------------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------
Confidence 3467889999999999999999998852 2456788899999999999999999999876311
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH----------------HHHHHH
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE----------------KGYFYM 1493 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we----------------K~~~~l 1493 (2037)
..+.++..+|..+...|+ .+++++.|++++++.|... .+|+.+
T Consensus 69 -------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 69 -------------------HLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 014567777877776665 8899999999999776544 888988
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1494 a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|..|.+.- -...|+..|-+++...++.
T Consensus 128 ~~~~~~~g----------------------~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 128 AFMYAKKE----------------------EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHcc----------------------CHHHHHHHHHHHHHcCccc
Confidence 87764221 1135788888888877654
No 124
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=94.34 E-value=0.91 Score=56.91 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+|....-.|...|.++.|..+.++.. ..|+-..+-..++-+.|...+|+..|+.++.
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 467787888888888888876665422 2344333455777788888899998888864
No 125
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.32 E-value=0.37 Score=48.86 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
..++.|..+...|+..+|+..+++++...| ..+.++..+|.-+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P------------------------------------~~~~a~~~lg~~~~ 62 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP------------------------------------EREEAWRSLGLTQA 62 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------------------TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHH
Confidence 356788999999999999999999876321 11557778888777
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..|+ .++++..|++|++++|....+|+.+|..|...- -...|+..|-+++...+++
T Consensus 63 ~~g~--~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 63 ENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEH----------------------NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHC-----
T ss_pred HcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCcCC
Confidence 7775 889999999999999999999999998775432 0125777888887766543
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.30 E-value=0.47 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVRE 1069 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~ 1069 (2037)
.++......|.|..|+.+++..+..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~ 30 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL 30 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc
Confidence 4677778889999999999887653
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.25 E-value=0.57 Score=46.70 Aligned_cols=108 Identities=16% Similarity=0.050 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--AP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+...|....+.|.++.|...+.++.... .+ .+.+..|..+...|+..+|+..++..++..|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------------ 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP------------ 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC------------
Confidence 457888999999999999999999887653 33 5778889999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
. ....+.++..+|..+...|+ .+++++.|+++++.+|....+...
T Consensus 71 -------~--------------~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 71 -------T--------------HDKAAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp -------T--------------STTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred -------C--------------CcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHHH
Confidence 1 11235677888888777765 889999999999999976655443
No 128
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.25 E-value=3.8 Score=56.60 Aligned_cols=142 Identities=9% Similarity=0.081 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh------cccHHHHHHHHHHHhHhhhhhhhhhhcccccc--c
Q 000149 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL------NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA--S 233 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~------~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (2037)
+.++.+....|..+..+-. +..+..-.+++ ...+. +++=..|+|+-..+.++.+.-. .+ ..+-. .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i---~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~--~~~~~~~~ 447 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE-VLVTNIFLAHM---KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-IT--NAGVSSTN 447 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH-HHHHHHHHHHH---HHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CB--TTBCCCBC
T ss_pred cCcHHHHHHHHHHHHHHcc-hhHHHHHHHHH---HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cc--cCCccccc
Confidence 3677888888888887765 33333322332 22223 4555688999888888641100 00 00000 0
Q ss_pred cchhhHHHHH-HHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 234 SRSNELKLLD-VIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
..-.-..||. .+...+... .+|.++-+.+.++|++ +...+.|.+.-++-.|+..|.++++.|+..|..-|.+++.
T Consensus 448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~--~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF--RNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT--GGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 0013344443 344444444 3899999999999998 4456778887777789999999999999999999999987
Q ss_pred hh
Q 000149 311 FH 312 (2037)
Q Consensus 311 ~~ 312 (2037)
..
T Consensus 526 ~~ 527 (960)
T 1wa5_C 526 IR 527 (960)
T ss_dssp CB
T ss_pred cc
Confidence 53
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.19 E-value=0.52 Score=46.31 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+......|.++.|...+.++.... .+......|.++...|+.++|+..+++++...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 468889999999999999999998887654 344566779999999999999999998865211
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. ...++..+|......| +.+++.+.|.++++..|....+|+.+|..|
T Consensus 67 ----~-----------------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 67 ----R-----------------SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp ----T-----------------CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----C-----------------chHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 0 0234555566554444 478899999999999998888898888765
No 130
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.09 E-value=1.3 Score=50.74 Aligned_cols=18 Identities=6% Similarity=-0.228 Sum_probs=9.7
Q ss_pred HHcCCcchHHHHHHHHHH
Q 000149 1236 MMKKDHFSVSDKIGVSKQ 1253 (2037)
Q Consensus 1236 l~~~d~~~f~~~I~~aR~ 1253 (2037)
...++..+..+.++.+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445666655555555443
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.03 E-value=0.45 Score=48.61 Aligned_cols=109 Identities=8% Similarity=-0.013 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
.+.+..|-..+..+.+.|.++.|.....+|....+. .+..-.|..++..|+.++|+..++.+++-.|.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~---------- 74 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----------
Confidence 355677888999999999999999999999887644 45667899999999999999999998862110
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
+ .......|+++..+|......++ .+++++.|++|++.+|+
T Consensus 75 ---------~----------~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------T----------RADYKLIAKAMSRAGNAFQKQND--LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------T----------TCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCC
T ss_pred ---------c----------chhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcC
Confidence 0 01223568899999998887775 88899999999988875
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.97 E-value=0.35 Score=61.21 Aligned_cols=153 Identities=11% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHhchhH-HHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh---
Q 000149 1044 VTLARASFRCQAY-ARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL--- 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ay-aRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l--- 1117 (2037)
..++.....-+.| ..|+-+++..+..... ..+.+..|..+|...++++.+...... ...++.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3677888889999 9999999998765321 135678899999999999988877652 222331
Q ss_pred hHHHHHHHhh---------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc--------cChHHHHHHhhhhhccch-
Q 000149 1118 QDELLSNKKS---------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM--------CHLQAMVTHVDGLISRIP- 1179 (2037)
Q Consensus 1118 ~~qil~~E~~---------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L--------gq~~~ll~~~~gl~~~~p- 1179 (2037)
......+... |+|++|..+|+++++..|++......+-.|+..+ |+++..+...+......|
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 1223445667 9999999999999999999988888888888888 999988877776655455
Q ss_pred --hhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1180 --QYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1180 --~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
.... .......+.+..|+|+.-.+++...
T Consensus 254 ~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 254 ASSNPD-LHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp GGGCHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322 2334456788999999887776554
No 133
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.96 E-value=0.8 Score=53.68 Aligned_cols=157 Identities=6% Similarity=-0.169 Sum_probs=99.1
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----hc-cC------
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----HK-SL------ 1115 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~-~~------ 1115 (2037)
+..-...|.|..|+-+++..+.-.....++. .....+..|..+|..+++++........ .. ..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNED------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445568899999999988665322111110 0123567888999999999887665431 11 11
Q ss_pred -ChhHHHHHHHhh-cCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh----
Q 000149 1116 -SLQDELLSNKKS-GNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK---- 1183 (2037)
Q Consensus 1116 -~l~~qil~~E~~-G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~---- 1183 (2037)
........|+.. |++++|..+|+++++..|+. .....++-.++.++|+++..+.+.+......|+...
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 122334567785 99999999999999876643 223445667788999999888877765544333211
Q ss_pred --hHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1184 --TWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1184 --~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
........+...+|+++.-.+++...
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01122334667789998888777664
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.93 E-value=0.39 Score=63.80 Aligned_cols=157 Identities=7% Similarity=-0.114 Sum_probs=112.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhh---cCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREK---SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~---~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--- 1116 (2037)
.....+..-+.|.+|+-+++..++.. ....+|. ..+.+-.+..+|..+++.+.+...... ...++
T Consensus 396 a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 396 ASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred hHHhhcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 33345588999999999999987210 0011121 224567888999999999988777542 11221
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
.......+...|++++|..+|+++++..|++...+..+=.|+.++|+|+. ....+..+...|+...-+. ....+...
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-~lg~~~~~ 546 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-GLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-HHHHHHHH
Confidence 22345678899999999999999999999999888888889999999988 7777766665665444333 33457788
Q ss_pred cCChhhHHHHhhccc
Q 000149 1196 LGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~~ 1210 (2037)
+|+++.-.+++..+-
T Consensus 547 ~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVP 561 (681)
T ss_dssp TTCHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHhhc
Confidence 999998877776654
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.84 E-value=0.61 Score=45.75 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......+.|..|+.+++..+..... ....+..+..+|...++++........ ...++ ..
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 6788888999999999999997764211 123344555566655555554444321 11111 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH 1163 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq 1163 (2037)
.....+...|+|++|..+|+++++..|++......+-.|+..+|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 122345555566666666665555555554444444445544444
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.2 Score=50.26 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.+...+.+.|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+......|....-+. ....+...+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~~~ 87 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI-RKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHhC
Confidence 34556788999999999999999999999888888889999999999888877766665565433333 33456677888
Q ss_pred hhhHHHHhh
Q 000149 1199 WDLMDEYLS 1207 (2037)
Q Consensus 1199 Wd~lee~l~ 1207 (2037)
++.-.+++.
T Consensus 88 ~~~A~~~~~ 96 (126)
T 3upv_A 88 YASALETLD 96 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 137
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.83 E-value=0.84 Score=47.74 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 107 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------------- 107 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------------
Confidence 35678889999999999999999988887664 345677788899999999999999988865311
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++..|....+|+.+|..|.
T Consensus 108 ------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 108 ------I-----------------NFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------H-----------------hHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 0 03355666666655554 788889999999999988888888887663
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.76 E-value=0.18 Score=67.08 Aligned_cols=137 Identities=13% Similarity=-0.032 Sum_probs=107.2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|+..|.+..+.|+++.|...+.+|...+ .+.+....+.++...|+.++|+..++++++-.|
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----------- 498 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----------- 498 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 3446789999999999999999999999987764 456788899999999999999999999986322
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~ 1503 (2037)
.+ +.++..+|.-+...|+. ++ ++.|++|++++|....+|+.+|.-|.++-
T Consensus 499 --------~~-----------------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g-- 548 (681)
T 2pzi_A 499 --------GE-----------------LAPKLALAATAELAGNT--DE-HKFYQTVWSTNDGVISAAFGLARARSAEG-- 548 (681)
T ss_dssp --------TC-----------------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred --------CC-----------------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC--
Confidence 11 23556667666667764 45 78999999999999999999998763221
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcch
Q 000149 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2037)
Q Consensus 1504 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~ 1543 (2037)
-...|+..|-+++...+.+.
T Consensus 549 --------------------~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 549 --------------------DRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp --------------------CHHHHHHHHHTSCTTSTTHH
T ss_pred --------------------CHHHHHHHHHhhcccCcccH
Confidence 11368899999998887764
No 139
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.67 E-value=33 Score=47.64 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh--cCC--hhHHHHHHHHHHHHHhhhcccch
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA--ADD--PLILETLLESTAELMMAVDVHSQ 277 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d--~~i~eTll~~~~~i~~~~~~~~e 277 (2037)
.+=..|+|++-.++++.+... ....+.---.++..+-..... .+| +.++.|.+-++|+...=...+.+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~--------~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~ 536 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMS--------EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSC--------HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCC--------chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence 578889999999999662111 000111111233333332322 122 45789999999998776667889
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
.+.-++-.|++.|..+|+-|...|..-|.++|..+.+
T Consensus 537 ~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9888899999999988999999999999999998765
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.53 E-value=0.33 Score=47.91 Aligned_cols=89 Identities=6% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh------hhHhHHHHHHHH
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK------KTWCMQGVQAAW 1194 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~------~~l~~~~~EAAW 1194 (2037)
...+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|... .........+..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999988888888999999999988777766554433321 122223456778
Q ss_pred hcCChhhHHHHhhcc
Q 000149 1195 RLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1195 rlg~Wd~lee~l~~~ 1209 (2037)
..|+|+.-.+++...
T Consensus 91 ~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 91 KEEKYKDAIHFYNKS 105 (131)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 899998877766543
No 141
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.52 E-value=0.52 Score=57.85 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cC--CChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQA----------------SG--APNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~----------------~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+.+..|...|..+.+.|.++.|.....+|.. .. .+.+....|..+...|+.++|+..+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4466799999999999999999998888765 21 23567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
+..+ ..++++..+|..+...++ .+++++.|++|.+++|....
T Consensus 301 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 301 EIDP------------------------------------SNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TTCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HhCc------------------------------------hhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHH
Confidence 6211 115678888887777765 88999999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
++..++..+..+
T Consensus 343 ~~~~l~~~~~~~ 354 (370)
T 1ihg_A 343 IQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877655
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.43 E-value=0.33 Score=51.33 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=60.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+..+...|....-+. ....+...+|+|+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLARFDMADYK 96 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccCHH
Confidence 345667888888888888888888888777777778888888888777777665555554433222 3345667788887
Q ss_pred hHHHHhhc
Q 000149 1201 LMDEYLSG 1208 (2037)
Q Consensus 1201 ~lee~l~~ 1208 (2037)
.-.+++..
T Consensus 97 ~A~~~~~~ 104 (164)
T 3sz7_A 97 GAKEAYEK 104 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.42 E-value=0.84 Score=47.10 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=83.9
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+++.....|...|....+.|+++.|...+.++....+ +.+....+.++...|+..+|+..++.++...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 4456677899999999999999999999999877654 45677889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
.+ ..++..+|..+...|+ .+++++.|.++++++|....
T Consensus 84 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 84 ----------NE-----------------PRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGG
T ss_pred ----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcc
Confidence 11 2346667777766665 78899999999999886543
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.40 E-value=0.46 Score=59.96 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----------------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----------------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----------------p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
..+..|...+....+.|+++.|.....+|..+.+ ..+....|..+...|+..+|+..++.++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999876532 25677889999999999999999999886
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1410 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
..+ ..++++..+|.-+...++ .++++..|++|++++|....+
T Consensus 346 ~~p------------------------------------~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDS------------------------------------ANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CH
T ss_pred cCC------------------------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHH
Confidence 311 115567777777766665 788999999999999999999
Q ss_pred HHHHHhhhHHHH
Q 000149 1490 YFYMAKYCDDVL 1501 (2037)
Q Consensus 1490 ~~~la~y~d~l~ 1501 (2037)
|..+|..+.++-
T Consensus 388 ~~~l~~~~~~~~ 399 (457)
T 1kt0_A 388 RLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876553
No 145
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.32 E-value=1.4 Score=49.25 Aligned_cols=170 Identities=12% Similarity=-0.022 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...|...|...-+.|.++.|...+.++....+ +.+.+..|..+...|+..+|+..+++.++..|.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---------- 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC----------
Confidence 35688899999999999999999999876532 247888899999999999999999999874321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccchH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----------------GQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s----------------~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+ .....++..+|.-.... ...+.+++++.|+++++.+|+..
T Consensus 74 ---------~--------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 74 ---------H--------------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ---------C--------------TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ---------C--------------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 01123444444433221 12347889999999999999877
Q ss_pred HHHHHH---HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc--hhhhHHHHHHHhhhcCc
Q 000149 1488 KGYFYM---AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1488 K~~~~l---a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~--~~q~lpRlLtLWl~~g~ 1559 (2037)
.++... +.....+-............. .-...|+..|-+.+..-++. ....+.++-..+...|.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTER--------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 665332 222111110000000000000 01236888888888765443 33567777777777664
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.32 E-value=0.2 Score=53.43 Aligned_cols=85 Identities=9% Similarity=-0.149 Sum_probs=54.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+.+.|++++|..+|+++++..|++.....++=.|+..+|+|+..+...+......|+...-+..+ ..+-..+|+++.
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l-g~~~~~lg~~~e 122 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT-GQCQLRLKAPLK 122 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH-HHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH-HHHHHHcCCHHH
Confidence 3456677777777777777777777777766666777777777776666655544445433333322 345667777766
Q ss_pred HHHHhh
Q 000149 1202 MDEYLS 1207 (2037)
Q Consensus 1202 lee~l~ 1207 (2037)
-.+++.
T Consensus 123 A~~~~~ 128 (151)
T 3gyz_A 123 AKECFE 128 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 147
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.30 E-value=0.65 Score=52.96 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHH--------cCCchHHHHHHHHHhhcCCcc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWS--------TRRSDGAIAELQQNLLNKPVE 1414 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~--------~g~~~~Ai~~L~~~i~~~~~~ 1414 (2037)
....|+..|.+..+.|.++.|...+.++....+ +.+....+..++. .|+..+|+..+++.++..|..
T Consensus 51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 356899999999999999999999999877632 3467778899999 999999999999998754321
Q ss_pred cccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHHH
Q 000149 1415 VVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGYF 1491 (2037)
Q Consensus 1415 ~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~---weK~~~ 1491 (2037)
+................+..++.+|..+...|+ .++++..|+++++.+|. -..+++
T Consensus 131 -------------------~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 131 -------------------ELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 000000000001112334556778888777765 88999999999999998 567999
Q ss_pred HHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1492 YMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1492 ~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.+|.-|.++-.... . .+. ..-...|+..|-+.+..-+++
T Consensus 190 ~l~~~~~~~g~~~~---~--------~~~-~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 190 GAMRAYIAYAEQSV---R--------ARQ-PERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHTSC---G--------GGH-HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcccch---h--------hcc-cchHHHHHHHHHHHHHHCCCC
Confidence 99987765521000 0 000 011236888888888765543
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.19 E-value=0.55 Score=48.72 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=60.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+......+......|.....+. ....+....|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhccH
Confidence 3455677888888888888888888888777777778888888888777766655544443322222 233456677888
Q ss_pred hhHHHHhhc
Q 000149 1200 DLMDEYLSG 1208 (2037)
Q Consensus 1200 d~lee~l~~ 1208 (2037)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (166)
T 1a17_A 98 RAALRDYET 106 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666544
No 149
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=93.19 E-value=14 Score=44.12 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.|...+++....|+++.|...+.++... +.+ .+....|.+++..|+..+|...++.++.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999888776432 222 3566679999999999999999998875
No 150
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.13 E-value=0.53 Score=55.22 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.++..|..+...|+++.|...+.++.... .+.+....|.++...|+.++|+..+++++...|....... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~----~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL----VAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH----HHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH----HHH
Confidence 4556777777777777777777777765553 3456667777777777777777777766543221000000 000
Q ss_pred cCCCC-CCCCCcc-cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhHHH
Q 000149 1427 LSLVP-LNPLPVL-SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1427 l~~~~-~~~~~~~-~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w--eK~~~~la~y~d~l 1500 (2037)
..+.. ....... .-.+....++.-+.+++.+|..+...|+ .+++...|.++++.+|.+ ..+|..+|..|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 00000 0000000 0000001112225567778888777776 888888899999999988 77888888877544
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.11 E-value=0.74 Score=49.02 Aligned_cols=107 Identities=8% Similarity=-0.112 Sum_probs=85.1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
.++++....|...+....+.|+++.|.....++....+ +.+....+..+...|+.++|+..+++++.-.|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 34566778899999999999999999999999887754 55677788999999999999999999876322
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
.+ +.++..+|.-+...|+ .+++++.|.+|+++.|.-+
T Consensus 102 -----------~~-----------------~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 -----------ND-----------------YTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----------SC-----------------CHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHH
T ss_pred -----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Confidence 11 2356666776666665 7899999999999998653
No 152
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.01 E-value=1.1 Score=50.95 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=95.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhhccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSLFLD 229 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~~~~ 229 (2037)
|++.|.. .+.+++..+...|++++.........-....-+..|-.+|.+++..+|..++..+..+.. ++- -..+.
T Consensus 17 ~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-- 93 (252)
T 4db8_A 17 MTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-- 93 (252)
T ss_dssp HHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 5666655 456789999999999888733221100111233445556699999999999999998652 110 00000
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chhHHH-HHHHHHHHhCCCCcchHHHHHHHHHH
Q 000149 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~-~l~~Li~~L~~~n~~~~~~a~~~i~~ 307 (2037)
+...+..+-+.+.. .|+.+++..+.+++.|....... ..+... ++-.|+..|.++++-++..|..-|.+
T Consensus 94 --------~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 94 --------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp --------HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred --------HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11245566665554 67889999999999984322212 111111 34458899999999999999999999
Q ss_pred HHhh
Q 000149 308 SCFF 311 (2037)
Q Consensus 308 la~~ 311 (2037)
++..
T Consensus 165 l~~~ 168 (252)
T 4db8_A 165 IASG 168 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9754
No 153
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.94 E-value=0.99 Score=50.53 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=107.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh-----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL----- 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l----- 1117 (2037)
-++...++-|.|.+|+-++|..+...+.+ ....+.+-.|..+|-..++.+.+...... ...|+-
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFG---------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 35777888999999999999987653221 11124566788999999999987776542 112221
Q ss_pred --hHHHHHHH------------------hhcCHHHHHHHHHHHHccCCCchhhh-----------------hhHHHHHHh
Q 000149 1118 --QDELLSNK------------------KSGNWAEVFTSCEQALQMEPTSVQRH-----------------SDVLNCLLN 1160 (2037)
Q Consensus 1118 --~~qil~~E------------------~~G~W~~A~~~YE~~Lq~~p~~~~~~-----------------~glL~CL~~ 1160 (2037)
-.....+. ..|++++|...|+++++..|++.... ..+-.++.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222232 26899999999999999999875432 233456788
Q ss_pred ccChHHHHHHhhhhhccchhhh--hhHhHHHHHHHHhcCChhhHHHHhhccc
Q 000149 1161 MCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAWRLGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1161 Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAAWrlg~Wd~lee~l~~~~ 1210 (2037)
.|+++..+...+.+....|+.. .+......++-..+|+++...+++....
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 8999988888887777666532 2333445678889999998887776543
No 154
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.91 E-value=1.9 Score=50.70 Aligned_cols=132 Identities=10% Similarity=0.050 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--Ch-HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PN-VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
....|+.++.+..+.|.++.|.....+|....+ +. +.+.++.++...|+.++|+..++++++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------------ 165 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------------ 165 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT------------
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------
Confidence 356899999999999999999999999887653 44 788999999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
.. +.+++..+. +........+++.+.|.+|++.+|.....|..+|.++.+.
T Consensus 166 -------~~-----------------~~~~~~~a~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---- 216 (308)
T 2ond_A 166 -------TR-----------------HHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---- 216 (308)
T ss_dssp -------CC-----------------THHHHHHHH-HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred -------CC-----------------HHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----
Confidence 00 112222221 1112234688999999999999999999999888875321
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR 1538 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~ 1538 (2037)
| -...|+..|-+++..
T Consensus 217 ----------g--------~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 217 ----------N--------EDNNTRVLFERVLTS 232 (308)
T ss_dssp ----------C--------CHHHHHHHHHHHHHS
T ss_pred ----------C--------CHHHHHHHHHHHHhc
Confidence 1 123577888888874
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.84 E-value=0.48 Score=47.98 Aligned_cols=100 Identities=9% Similarity=-0.072 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|+..+....+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..+++++.-.|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------- 82 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------------- 82 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 458999999999999999999999987765 456777899999999999999999999886322
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. .+.++..+|..+...|+ .++++..|.++++++|.+.
T Consensus 83 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 83 ----K-----------------DIAVHAALAVSHTNEHN--ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp ----T-----------------CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred ----C-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence 1 02244445554444443 5678889999999988754
No 156
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.83 E-value=0.87 Score=51.37 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=98.6
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhhhhhhcc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTVLSSLFL 228 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~~~~~~~ 228 (2037)
+.+.++|-++ +.+|+..+..+|..+..+.......-.....+..+-.++.+++..+|.+++..+..+.. ++-...
T Consensus 47 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--- 122 (252)
T 4hxt_A 47 EVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--- 122 (252)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---
Confidence 3466666654 58899999999999988754321111112344555666799999999999999999751 111000
Q ss_pred ccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHH
Q 000149 229 DENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIR 306 (2037)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~ 306 (2037)
.-.+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|++.|.++++.++..|..-|.
T Consensus 123 ------~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 123 ------AIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp ------HHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ------HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 0011234556666444 56688999999999998542211111111 14455888999999999999999999
Q ss_pred HHHhh
Q 000149 307 KSCFF 311 (2037)
Q Consensus 307 ~la~~ 311 (2037)
++|..
T Consensus 196 ~l~~~ 200 (252)
T 4hxt_A 196 NIASG 200 (252)
T ss_dssp HHTTS
T ss_pred HHHcC
Confidence 99763
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.82 E-value=0.37 Score=46.53 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++......+......|.... .......+....|++
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK-GYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHHhhH
Confidence 3445678899999999999999988988887778888888999998877776665554454322 222344567788888
Q ss_pred hhHHHHhhcc
Q 000149 1200 DLMDEYLSGA 1209 (2037)
Q Consensus 1200 d~lee~l~~~ 1209 (2037)
+...+++...
T Consensus 89 ~~A~~~~~~~ 98 (118)
T 1elw_A 89 EEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877666543
No 158
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.78 E-value=1.9 Score=49.15 Aligned_cols=137 Identities=8% Similarity=0.041 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
....|...+.+..+.|.++.|...+.+|...+++.+....+.++.. .|+..+|+..++++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3567899999999999999999999999888888899999999999 999999999999886520
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~ 1501 (2037)
.+.++..+|...... ...+.+++++.|++|++.. ...+++.+|..|..-.
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGK 124 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCC
Confidence 034566677666541 1345889999999999885 5678899988763210
Q ss_pred HHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1502 VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1502 ~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
...+ -...|+..|-+++..++..
T Consensus 125 ----------~~~~--------~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 125 ----------VVTR--------DFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp ----------SSCC--------CHHHHHHHHHHHHHTTCHH
T ss_pred ----------Cccc--------CHHHHHHHHHHHHhcCcHH
Confidence 0001 1236888899999887543
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.77 E-value=1.2 Score=46.79 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=82.3
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+++.....|...+....+.|+++.|...+.++....+ +.+....+..+...|+.++|+..++.++.-.|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------- 86 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--------- 86 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 3455677899999999999999999999999877653 45677889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
.+ +.++..+|..+...|+ .+++.+.|.+++++.|.-
T Consensus 87 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 87 ----------XE-----------------PRFPFHAAECLLQXGE--LAEAESGLFLAQELIANX 122 (148)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTC
T ss_pred ----------CC-----------------chHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCC
Confidence 11 2356667777766665 788899999999998753
No 160
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=92.77 E-value=18 Score=47.36 Aligned_cols=91 Identities=5% Similarity=-0.014 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh--hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL--LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~--~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2037)
.+-++...++.|..|- .++ + .......|..++ .|++..||.+|+-.+..+.+. .. +--..
T Consensus 124 n~~ir~lALr~L~~i~---~~e-~---~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~------~p-----~~~~~ 185 (621)
T 2vgl_A 124 NPTFMGLALHCIANVG---SRE-M---AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT------SP-----DLVPM 185 (621)
T ss_dssp CHHHHHHHHHHHHHHC---CHH-H---HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH------CG-----GGCCC
T ss_pred CHHHHHHHHHHhhccC---CHH-H---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh------Ch-----hhcCc
Confidence 3444555666666662 222 1 122334566677 899999999999999997621 00 01111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 239 LKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
..+++++.+.+. -+||.|+...+-.+.+|+.
T Consensus 186 ~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 186 GDWTSRVVHLLN-DQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp CSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCccHHHHHHHHHHHHHH
Confidence 357888988774 5789999999999999855
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.68 E-value=0.58 Score=46.39 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....+.+.|..|+.+++..+... |. ....+..+..+|.
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~-----~~-------~~~~~~~la~~~~--------------------------- 61 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN-----PK-------DAKLYSNRAACYT--------------------------- 61 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC-----TT-------CHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----CC-------cHHHHHHHHHHHH---------------------------
Confidence 57888899999999999999976532 10 1123334444444
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
..|+|++|..+|+++++..|++......+-.|+..+|+++....+.+..
T Consensus 62 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 62 -KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp -TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555555544444555555555555544444433
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.57 E-value=1.3 Score=46.66 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------C--CChHHHHHHHHHHHcCCchHHHHHHHH
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------------------G--APNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~------------------~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2037)
..+..|...+....+.|.++.|.....+|... . .+.+....|..+...|+..+|+..++.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45678999999999999999999988887655 1 123566778889999999999999998
Q ss_pred HhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1407 NLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1407 ~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
++.-.| ..++++..+|.-+...|+ .++++..|.+|++++|..
T Consensus 89 al~~~p------------------------------------~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 89 VLKREE------------------------------------TNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGG
T ss_pred HHhcCC------------------------------------cchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCC
Confidence 876211 115677788887777765 788999999999999987
Q ss_pred H-HHHHHHHhhhHHH
Q 000149 1487 E-KGYFYMAKYCDDV 1500 (2037)
Q Consensus 1487 e-K~~~~la~y~d~l 1500 (2037)
. ..+..++....++
T Consensus 131 ~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 131 ASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6 4455665554433
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.56 E-value=0.32 Score=49.67 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
...+.+.|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 45677899999999999999999999999888888999999999988877765544333
No 164
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.55 E-value=2.3 Score=47.77 Aligned_cols=82 Identities=9% Similarity=0.022 Sum_probs=45.0
Q ss_pred hhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc--------chhhhhhHhHHH
Q 000149 1126 KSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR--------IPQYKKTWCMQG 1189 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~--------~p~~~~~l~~~~ 1189 (2037)
..|+|++|..+|+++++. .|........+-.|+...|+++....+.+..... .|.. .......
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV-AATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHH
Confidence 456666777777666652 2333444455666777777777666555443221 1211 1122223
Q ss_pred HHHHHhcCChhhHHHHhhc
Q 000149 1190 VQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~ 1208 (2037)
..+.+..|+|+...+++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 4566777888777666554
No 165
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.54 E-value=0.93 Score=53.13 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=107.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCChh----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQ---- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~l~---- 1118 (2037)
.+|....+-|.|..|+-+++..+....+ ..+.+-.|..+|...+++|........- ..++..
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQ------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCc------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 5788889999999999999998775322 1346778999999999999998887532 122211
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh-HhHHHHHHHHhcC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT-WCMQGVQAAWRLG 1197 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~-l~~~~~EAAWrlg 1197 (2037)
...+.+...|+.++|...|+++++..|++.+.+..+-.++...|+++......+..+...|++... .......+--.+|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122345677889999999999999999999999999999999999999988888877776765221 1112233333456
Q ss_pred ChhhH
Q 000149 1198 RWDLM 1202 (2037)
Q Consensus 1198 ~Wd~l 1202 (2037)
+++..
T Consensus 270 ~~~~a 274 (287)
T 3qou_A 270 TGDAL 274 (287)
T ss_dssp TTCHH
T ss_pred CCCcH
Confidence 65543
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.43 E-value=0.38 Score=49.81 Aligned_cols=86 Identities=7% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+......|+...-+ .....+...+|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHcCCHH
Confidence 34566788888888888888888888888777777888888888877777666555445432222 23345667788887
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 104 ~A~~~~~ 110 (142)
T 2xcb_A 104 GAESGFY 110 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.38 E-value=0.35 Score=52.39 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCC-------chh-----hhhhHHHHHHhccChHHHHHHhhhhhcc-------ch
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPT-------SVQ-----RHSDVLNCLLNMCHLQAMVTHVDGLISR-------IP 1179 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~-------~~~-----~~~glL~CL~~Lgq~~~ll~~~~gl~~~-------~p 1179 (2037)
.....+.+.|+|++|..+|+++|+..|+ +.. .+.+.=.|+.++|+|+..+...+..+.. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3456677899999999999999999998 433 5566778999999999988888877766 78
Q ss_pred hhhhhH----hHHHHHHHHhcCChhhHHHH
Q 000149 1180 QYKKTW----CMQGVQAAWRLGRWDLMDEY 1205 (2037)
Q Consensus 1180 ~~~~~l----~~~~~EAAWrlg~Wd~lee~ 1205 (2037)
++..-| +..+. |--.+|+++.-.+.
T Consensus 96 d~~~A~~~~~~~rG~-aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 96 DEGKLWISAVYSRAL-ALDGLGRGAEAMPE 124 (159)
T ss_dssp THHHHHHHHHHHHHH-HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHhHHH-HHHHCCCHHHHHHH
Confidence 777666 54443 66678888776544
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.32 E-value=0.45 Score=47.42 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchhhh--hhHhHHHHHHH
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAA 1193 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAA 1193 (2037)
.....+...|+|++|...|+.+++..|++. .....+-.|+...|+++......+......|+.. .+.......+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345567788999999999999999888876 5666777888999999988877776665555431 12222345667
Q ss_pred HhcCChhhHHHHhhc
Q 000149 1194 WRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1194 Wrlg~Wd~lee~l~~ 1208 (2037)
...|+++.-.+++..
T Consensus 87 ~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 788888877666544
No 169
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.31 E-value=2 Score=46.80 Aligned_cols=134 Identities=6% Similarity=-0.031 Sum_probs=93.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+.+++..+. + ....+-.+..+|..+++.+........ ...+. ..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~-------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD-------P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS-------C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 467788889999999999987531 1 124677889999999999887776542 11121 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccchhhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~ 1182 (2037)
.....|...|++++|..+|+++++..|++. .....+-.|+..+|+++......+......|+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 345667889999999999999999777655 5556677788899999988877776666555443
Q ss_pred hhHhHHHHHHH
Q 000149 1183 KTWCMQGVQAA 1193 (2037)
Q Consensus 1183 ~~l~~~~~EAA 1193 (2037)
......+++..
T Consensus 156 ~~~~~~a~~~~ 166 (213)
T 1hh8_A 156 HSKIDKAMECV 166 (213)
T ss_dssp GGHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 33333334433
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.22 E-value=0.45 Score=47.98 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=61.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++......+-.|+..+|+|+......+......|....-+. ....+...+|+|+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~ 94 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHHHHHHhhHH
Confidence 345668888999999999888888888887788888888889988877776665555554333222 3345667788887
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 95 ~A~~~~~ 101 (137)
T 3q49_B 95 EAIANLQ 101 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 171
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.13 E-value=11 Score=48.05 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=94.1
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhhh
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLSS 225 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~~ 225 (2037)
-+.+-++|-.....++|..+..+|..|..|.+.. ..++. --+..|-.+|.+++..||+.++.++..+..+ +-...
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4557777776667789988888999988776644 22222 1233445566999999999999999886421 11000
Q ss_pred -hccccccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchH
Q 000149 226 -LFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVR 298 (2037)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~ 298 (2037)
+.. ...+..+-..+...+ ...++.++..+++.+++......+.. .-++-.|+..|.++++-++
T Consensus 180 ~v~~----------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 180 LVIK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHHH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHH----------cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 011 112233334333222 23356677777777754333333322 2344558888899999999
Q ss_pred HHHHHHHHHHHhhh
Q 000149 299 MNASRLIRKSCFFH 312 (2037)
Q Consensus 299 ~~a~~~i~~la~~~ 312 (2037)
..|..-|..++...
T Consensus 250 ~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 250 ADSCWAISYLTDGP 263 (510)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhch
Confidence 99999999987654
No 172
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.98 E-value=0.76 Score=49.29 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhH
Q 000149 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCD 1498 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w--eK~~~~la~y~d 1498 (2037)
+.++..+|..+...|+ .++++..|.++++.+|.+ ..+|+.+|..+.
T Consensus 108 ~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 108 FELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 4466777777766665 777888888888888876 347777776553
No 173
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=91.94 E-value=10 Score=48.38 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=92.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLS 224 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~ 224 (2037)
.-+.+.++|-.....++|..+..+|..|..|.+.. ..+.. --+..|-.+|.+++..||+.++.++..+..+ +-..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 34557777776777888988888999998887644 22221 1233445577999999999999999886411 1100
Q ss_pred h-hccccccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcch
Q 000149 225 S-LFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTV 297 (2037)
Q Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~ 297 (2037)
. +... ..+..+-..+.... ...++..+..+++.+++......+.. .-++=.|+..|.++++-+
T Consensus 198 ~~i~~~----------g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 198 DLVIKH----------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHHHT----------TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHc----------CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 0 1111 12223333333222 22356666667777654332222222 223445888889999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000149 298 RMNASRLIRKSCFFH 312 (2037)
Q Consensus 298 ~~~a~~~i~~la~~~ 312 (2037)
+..|..-|..++...
T Consensus 268 ~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 268 LADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999998888887654
No 174
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.91 E-value=1.6 Score=56.27 Aligned_cols=166 Identities=9% Similarity=0.057 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccc
Q 000149 1362 AGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLS 1439 (2037)
Q Consensus 1362 ag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 1439 (2037)
+|.++.|...+.++.+.. .+.+....|..++..|+.++|+..++++++..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--------------------------- 54 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------
Confidence 366778888777776554 356788899999999999999999999876311
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchh
Q 000149 1440 NTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEK 1519 (2037)
Q Consensus 1440 ~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~ 1519 (2037)
..+.++..+|..+...|+ .+++.+.|++|++++|+...+|+.+|..|.+.-
T Consensus 55 ---------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------ 105 (568)
T 2vsy_A 55 ---------GHPEAVARLGRVRWTQQR--HAEAAVLLQQASDAAPEHPGIALWLGHALEDAG------------------ 105 (568)
T ss_dssp ---------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------------
T ss_pred ---------CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC------------------
Confidence 014567777877777665 889999999999999999999999997663220
Q ss_pred hhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHh
Q 000149 1520 RWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2037)
Q Consensus 1520 ~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt 1597 (2037)
-...|+..|-+++...+++. .....+-.+....+.. ....++...+.+.++..-..+.++..+.
T Consensus 106 ----~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 106 ----QAEAAAAAYTRAHQLLPEEP-YITAQLLNWRRRLCDW---------RALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCC---------TTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ----CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 11368888888888776643 2333344444443110 1122333344455555445555554443
No 175
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.91 E-value=2.9 Score=47.02 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=96.7
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hh-hhhhccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TV-LSSLFLD 229 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~-~~~~~~~ 229 (2037)
+.++|-.+. .+++..+...|..+..+.......-....-+..|-.+|.+++..+|..++..+..+..+ +- -..+.
T Consensus 7 L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 7 LVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 556665544 88999999999999988652211001122344555666999999999999999987521 11 00011
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHH
Q 000149 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~ 307 (2037)
+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++-++..|..-|.+
T Consensus 84 --------~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 84 --------DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp --------HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1134555666444 46788999999999998532211112111 135568899999999999999999999
Q ss_pred HHhh
Q 000149 308 SCFF 311 (2037)
Q Consensus 308 la~~ 311 (2037)
++..
T Consensus 155 l~~~ 158 (252)
T 4hxt_A 155 IASG 158 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9654
No 176
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.83 E-value=2.3 Score=49.16 Aligned_cols=161 Identities=10% Similarity=0.024 Sum_probs=105.8
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCC-chhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhh
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT-RDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQD 220 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~ 220 (2037)
-+|.++-..+-+.|-..+.-.|+.+...+|..+..+.. ...--.-....+ ..++.+ .|+...||.++..++..|+++
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 35666655566665455666677777888888877655 332101011112 344555 899999999999999998732
Q ss_pred hhhhhhcccccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHHHHhCCCC
Q 000149 221 TVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-----LFLLILLVEQLDNPH 294 (2037)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-----~~~l~~Li~~L~~~n 294 (2037)
- +. .....-..++..+..++... +|++++..+..++++..+.....+-| .-.+=.|...|+.++
T Consensus 135 ~---------~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 135 Y---------DPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp S---------CTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS
T ss_pred c---------cccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 11112456888898877655 89999999999999866542211322 122334888889999
Q ss_pred cchHHHHHHHHHHHHhhhhc
Q 000149 295 VTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 295 ~~~~~~a~~~i~~la~~~~~ 314 (2037)
+.||..|+.-+-.+++.--.
T Consensus 205 ~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 205 PAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999766533
No 177
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.75 E-value=0.95 Score=51.44 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=98.6
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+.+.++|-++. .+|+..+...|..+..+.... ..++ ..-+..|-.+|.+++..||..++.++..+..++-..
T Consensus 57 ~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (252)
T 4db8_A 57 PALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (252)
T ss_dssp HHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---
Confidence 44667776654 889999999999998865433 1111 123345556679999999999999999975221100
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
-..-.....+..+-+.+. ..|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++.++..|..-|
T Consensus 131 -----~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 131 -----IQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp -----HHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred -----HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 000111235566666554 4588899999999999854221121111 11344688999999999999999999
Q ss_pred HHHHhh
Q 000149 306 RKSCFF 311 (2037)
Q Consensus 306 ~~la~~ 311 (2037)
.++|..
T Consensus 205 ~~l~~~ 210 (252)
T 4db8_A 205 SNIASG 210 (252)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999753
No 178
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=91.69 E-value=34 Score=42.86 Aligned_cols=149 Identities=7% Similarity=0.053 Sum_probs=90.7
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2037)
+.+.++|. ..+.+|+..++..|.++..+...- ..... ...+.-+-.+|. +++..+|..+++.+..+-.++ ....+
T Consensus 20 ~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34556665 456788888999999998775421 11111 122332233334 458999999999999854111 11111
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+ ...|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++-++..|..-
T Consensus 98 ~~----------~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 98 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HH----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 12334444433 34678899999999999854322222222 2345568999999999999988888
Q ss_pred HHHHHhh
Q 000149 305 IRKSCFF 311 (2037)
Q Consensus 305 i~~la~~ 311 (2037)
+.++|..
T Consensus 167 L~~la~~ 173 (529)
T 1jdh_A 167 LQILAYG 173 (529)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8888653
No 179
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.66 E-value=0.81 Score=52.56 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hcc--------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS-------- 1114 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~-------- 1114 (2037)
..++......|.|..|+.+++..+........+ ........+..|..+|...++++...-.... ...
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGK----DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 357888889999999999999876542110000 0001124567899999999999987776531 100
Q ss_pred -C----ChhHHHHHHHhhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhh
Q 000149 1115 -L----SLQDELLSNKKSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI 1175 (2037)
Q Consensus 1115 -~----~l~~qil~~E~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~ 1175 (2037)
+ ........+...|+|++|..+|+++++. .|........+-.|+..+|+++....+.+...
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 1223345678999999999999999876 44445556677889999999998777666544
No 180
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.65 E-value=0.53 Score=61.88 Aligned_cols=246 Identities=13% Similarity=0.066 Sum_probs=150.9
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
.|+|.++.||..|+-+|.-|. ++.+...+...+....++.+.-|||.-+.++|-+.-.+... +.+....-+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~ 189 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLN 189 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTT
T ss_pred hcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhC
Confidence 567999999999999988776 67888888888888888999999999999998887654311 1111111122222
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcc-------------
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYD------------- 158 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 158 (2037)
| .| +.-+..++.-+ |.+|... .+....|..+-+.++++|.+
T Consensus 190 D-~d---~~V~~~Al~~L-~~i~~~~---------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 190 E-KN---HGVLHTSVVLL-TEMCERS---------------------PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp C-CC---HHHHHHHHHHH-HHHCCSH---------------------HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred C-CC---HhHHHHHHHHH-HHHHHhC---------------------hHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 2 11 11111111000 1112111 00011233344445555543
Q ss_pred -cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh------hcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 159 -ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL------LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 159 -~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~------~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
-+++-.|+.+++.|+.+..+.... ......+|..++ .|.+.+|...+++++-.+-
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~------------- 305 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK------------- 305 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-------------
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-------------
Confidence 246777888899988887763311 122334555553 3567789988888776521
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~ 311 (2037)
+...-...+...+.. |...+|+.++...|.+++.|+.. +.+.+.-..-.++..|..++..||-.|...+..++..
T Consensus 306 -~~~~l~~~a~~~L~~-~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 306 -SESGLRVLAINILGR-FLLNNDKNIRYVALTSLLKTVQT---DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp -CCHHHHHHHHHHHHH-HHTCSSTTTHHHHHHHHHHHHHH---HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred -CCHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 111112345555665 34457889999999999999543 3444444455788889999999999999999999553
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.64 E-value=0.6 Score=44.61 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh--hhhhHhHHHHHHHHhc-C
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAWRL-G 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~--~~~~l~~~~~EAAWrl-g 1197 (2037)
...+...|+|++|..+|+++++..|++......+-.|+..+|+++......+......|. ... .......+.-.+ |
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD-VWAAKADALRYIEG 91 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-HHHHHHHHHTTCSS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-HHHHHHHHHHHHhC
Confidence 344556677777777777777777766666666666777777777666655544444443 221 222333455566 7
Q ss_pred ChhhHHHHhhcc
Q 000149 1198 RWDLMDEYLSGA 1209 (2037)
Q Consensus 1198 ~Wd~lee~l~~~ 1209 (2037)
+++...+++...
T Consensus 92 ~~~~A~~~~~~~ 103 (112)
T 2kck_A 92 KEVEAEIAEARA 103 (112)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 776666655443
No 182
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.43 E-value=2.3 Score=46.81 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=96.8
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhh
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSL 226 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~ 226 (2037)
-+.+.++|. ..+.+|+..+...|..+..+.......-....-+..|-.+|.+++..+|.+++.++..+.. ++. ...+
T Consensus 14 ~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 345666665 4578999999999999987755331100111223445556699999999999999998651 111 1111
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+. ..|+.+++..+.+++.|........+.+ . -++-.|++.|.++++-++..|..-
T Consensus 93 ~~----------~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 93 ID----------AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HH----------TTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HH----------CCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 113445555443 4578899999999999853221111111 1 134558888999999999999999
Q ss_pred HHHHHhhh
Q 000149 305 IRKSCFFH 312 (2037)
Q Consensus 305 i~~la~~~ 312 (2037)
|.++|...
T Consensus 162 L~~l~~~~ 169 (210)
T 4db6_A 162 LSNIASGG 169 (210)
T ss_dssp HHHHHTSC
T ss_pred HHHHHcCC
Confidence 99997653
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.39 E-value=1.2 Score=48.06 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------h-------HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-------N-------VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-------~-------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2037)
..+..|+..+....+.|+++.|..+-.+|..+.+. + +....+-.+...|+.++|+.....+|.-+.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999998777544 1 667788889999999999999998876200
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhhhhHHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL----LLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1413 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~----Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
. ..+-++..++++ .-+|.-+...|+ .++++..|++|+++.|.
T Consensus 89 -----~------------------------~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 -----R------------------------RGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -----H------------------------HCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -----c------------------------cccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCC
Confidence 0 000112335666 888888877776 89999999999999885
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=91.28 E-value=49 Score=43.82 Aligned_cols=131 Identities=9% Similarity=0.069 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHH-HHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETAT-RAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~-~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+.|+.+|++....|..+.|. ..+.+|....+.+ +.+.+|++.+..|+.++|-..++.+++..+...-. +
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~ 415 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------L 415 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------h
Confidence 3678999999999999998887 7777776655443 56789999999999999999999887632110000 0
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccchHHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-QPMWEKGYFYMA 1494 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l-~~~weK~~~~la 1494 (2037)
.. -.|.+ ..+...-....+++++.+++.....+. .+.+.+.|..|.+. .+.-.+.|..+|
T Consensus 416 ~~--~~p~~------~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 416 ME--DDPTN------ESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HH--HSTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred hh--ccCcc------hhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00 00100 000001122346788899998877664 68888999999987 322234555444
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.27 E-value=0.67 Score=44.25 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------------- 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE------------- 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-------------
Confidence 35678889999999999999999999887765 345677889999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccc
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
. ...+.++..+|...... |+ .+++.+.|.++++..|.
T Consensus 72 ------~---------------~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 72 ------D---------------EYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp ------C---------------TTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCC
T ss_pred ------c---------------cchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccC
Confidence 0 00134566677766555 54 67888888888887774
No 186
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.13 E-value=33 Score=42.77 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHhhcCCChHHHHHHHH-H--HHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccc
Q 000149 1363 GHYETATRAILEAQASGAPNVHMEKAKL-L--WSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLS 1439 (2037)
Q Consensus 1363 g~~~~A~~aLl~a~~~~~p~~~iE~AKL-L--W~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 1439 (2037)
+.++.|.....+|. .+.+.+...-+.+ + ...|+..+|+..++++.+. |
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g---------------------- 281 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------D---------------------- 281 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------T----------------------
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------C----------------------
Confidence 45666777776666 6677777777777 3 4567778888888877541 0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000149 1440 NTQTLNEKRDIAKTLLLYSRWIHYTG---QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2037)
Q Consensus 1440 ~~q~~~~~~~~Ak~~Ll~akwl~~s~---~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~ 1516 (2037)
.+.++..+|..+. .| ..+.+++.+.|++|. +....+++.+|..|..= .|.
T Consensus 282 ----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G-------------~g~ 334 (452)
T 3e4b_A 282 ----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG-------------YLG 334 (452)
T ss_dssp ----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT-------------TTS
T ss_pred ----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC-------------CCC
Confidence 0345666776665 33 235777888888777 66777888888665310 000
Q ss_pred chhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1517 SEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1517 ~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
. .-...|+..|-+++..|+..
T Consensus 335 -~----~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 335 -K----VYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp -S----CCHHHHHHHHHHHHTTTCTT
T ss_pred -C----cCHHHHHHHHHHHHhhChHH
Confidence 0 01236788888888877653
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.09 E-value=0.67 Score=46.97 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=54.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
...+...|+|++|..+|+.+++..|++ ......+-.|+..+|+|+......+......|....-+ .....+....|
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~ 113 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL-YRRSQALEKLG 113 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH-HHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH-HHHHHHHHHcC
Confidence 344567788888888888888877776 55556667777788888777666655444444332222 23344566777
Q ss_pred ChhhHHHHhh
Q 000149 1198 RWDLMDEYLS 1207 (2037)
Q Consensus 1198 ~Wd~lee~l~ 1207 (2037)
+|+.-.+++.
T Consensus 114 ~~~~A~~~~~ 123 (148)
T 2dba_A 114 RLDQAVLDLQ 123 (148)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7776655544
No 188
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.08 E-value=1.7 Score=46.51 Aligned_cols=147 Identities=8% Similarity=-0.043 Sum_probs=101.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCChhHH-H
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQDE-L 1121 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~l~~q-i 1121 (2037)
.++....+-|.|..|+.+++.-+...+. ....+-.|..+|...++++........- ..++..-. .
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 78 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL 78 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence 4677788899999999999987664332 1245778999999999999988876531 11211110 0
Q ss_pred ---HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh-hHhHHHHHHHHhcC
Q 000149 1122 ---LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK-TWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1122 ---l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~-~l~~~~~EAAWrlg 1197 (2037)
+.....+....|..+|+++++..|++...+..+-.|+...|+++......+......|++.. ........+...+|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 11112223345899999999999999998888899999999999988888877777665422 11222345566677
Q ss_pred ChhhHH
Q 000149 1198 RWDLMD 1203 (2037)
Q Consensus 1198 ~Wd~le 1203 (2037)
+++...
T Consensus 159 ~~~~A~ 164 (176)
T 2r5s_A 159 QGNAIA 164 (176)
T ss_dssp SSCHHH
T ss_pred CCCcHH
Confidence 776543
No 189
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=91.05 E-value=40 Score=42.48 Aligned_cols=170 Identities=11% Similarity=0.127 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHH-------hCCCC-----HHHHHHHHHHHHH-hccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000149 1451 AKTLLLYSRWIHY-------TGQKQ-----KEDVITLYSRVRE-LQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~-------s~~~~-----~~~i~~~Y~~A~~-l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~ 1517 (2037)
+++++.+|.|+.. .|+.. .+++.+.|.+|++ +.|+....|+.+|.++.+.-
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---------------- 335 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM---------------- 335 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC----------------
Confidence 5678999999876 45533 3488999999997 89999999999998864321
Q ss_pred hhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHh
Q 000149 1518 EKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2037)
Q Consensus 1518 ~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt 1597 (2037)
-...|...|-+++...+.... .+|..++....+ .+......+++++.+..-|......
T Consensus 336 ------~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~---------~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 336 ------KYEKVHSIYNRLLAIEDIDPT-------LVYIQYMKFARR---------AEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp ------CHHHHHHHHHHHHHSSSSCHH-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred ------CHHHHHHHHHHHhCccccCch-------HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhccCCchHHH
Confidence 123578888888887665321 156555432110 0111223445666665544321111
Q ss_pred -hHHHHHhhccCCChHHHHHHHHHHHHHHHhcchh-HHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCC
Q 000149 1598 -VLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQ-GLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663 (2037)
Q Consensus 1598 -~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq-~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~ 1663 (2037)
..-++--. ...+ ......+..+.++.+|.. .+|.-.+.+... ..+.+.|..+++++....+
T Consensus 394 ~~~a~~~~~-~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 394 VTAALMEYY-CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHH-HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHH-HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccC
Confidence 11112111 1223 355666777777788864 466555533222 3456678888888776543
No 190
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.04 E-value=1.9 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+.+.|..|+-+++..+..... ....+..+..+|...++++........ ...+. ..
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 5677888899999999999987654211 112344455555555555544443321 00110 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ 1149 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~ 1149 (2037)
.....+...|++++|..+|+++++..|++..
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 1223344555555555555555555554443
No 191
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.90 E-value=0.67 Score=48.71 Aligned_cols=85 Identities=7% Similarity=-0.012 Sum_probs=56.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+......|+...-+. ....+-..+|+++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF-HAAECLLQXGELAE 107 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH-HHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHcCCHHH
Confidence 44567788888888888888888887777777777788888887776666655544444322222 23455667777776
Q ss_pred HHHHhh
Q 000149 1202 MDEYLS 1207 (2037)
Q Consensus 1202 lee~l~ 1207 (2037)
-.+++.
T Consensus 108 A~~~~~ 113 (148)
T 2vgx_A 108 AESGLF 113 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 192
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.86 E-value=3 Score=48.32 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=37.4
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000149 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2037)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2037)
+.+--.|.|+...||..|+..+--+- ++. ....|..+.++....|+......||.+.
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~---~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG---GQD----AVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC---Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 33445678888999999887765442 443 4444445555666778888777777653
No 193
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=90.84 E-value=3 Score=46.03 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWC 1186 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~ 1186 (2037)
....|...|++++|..+|+++++..|++......+=.|+..+|+++......+..+...|+....+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4566789999999999999999999999998888888999999999888887777666665444333
No 194
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.69 E-value=5.5 Score=46.45 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
...++-+.+.+.+..|+++.|..+..+|... +++ .+...-+.++...|+.++|+..+++++.-.+.
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------ 109 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH------ 109 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 3455666678889999999999988887554 333 35567789999999999999999998762110
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|.-+... |+ .++++..|++|+++.|.- ..++..
T Consensus 110 ------------------------~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 110 ------------------------RGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 001223467788888877764 65 899999999999998753 244556
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1493 la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
+|..|-+. |. ...|+..|-+++...++.
T Consensus 164 lg~~~~~~--------------g~--------~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 164 CADLKALD--------------GQ--------YIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHT--------------TC--------HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHh--------------CC--------HHHHHHHHHHHHHHHhcC
Confidence 66554211 11 136889999999876543
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.61 E-value=0.48 Score=49.97 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=64.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHcc------------------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQM------------------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~------------------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
.++...+-+.|+|++|..+|+++++. .|.+.....++-.|+..+|+|+..+.+.+..+...|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34556677889999999999999887 455556667777899999999988888777666556
Q ss_pred hhhhhHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1180 QYKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1180 ~~~~~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
....-+. ....+--.+|+|+.-.+++..
T Consensus 95 ~~~~a~~-~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 95 TNEKALF-RRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp TCHHHHH-HHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHhcHHHHHHHHHH
Confidence 5544333 234566778888876665443
No 196
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.61 E-value=2.5 Score=44.78 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHH-HHHcCCc--hHHHHHHHHHhhcCCcccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKL-LWSTRRS--DGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKL-LW~~g~~--~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
....|...+.+....|.++.|..++.++.... .+.+....|.+ +...|+. .+|+..++.++...|
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---------- 112 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS---------- 112 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC----------
Confidence 35689999999999999999999999987664 45677788888 6688998 999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
. ...++..+|......|+ .+++...|.++++++|.....
T Consensus 113 ---------~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 113 ---------N-----------------EITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp ---------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCH
T ss_pred ---------C-----------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccH
Confidence 0 03456667777766665 788999999999999976443
No 197
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.56 E-value=1.3 Score=48.82 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=97.4
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2037)
+.+.++|.++ +.+|+-.++.+|..+..+.... ..++ ..-+..|-.+|.+++..+|..++.++..+..+. ....
T Consensus 57 ~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 57 PALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4466777665 7789999999999998765432 1111 123345555669999999999999999975110 0000
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
+. ....+..+-+.+.. .|+.+++..+.+++.++.......+.+ . -++-.|++.|.++++-++..|..
T Consensus 134 ~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 134 VI----------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HH----------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HH----------HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 00 12356666665544 588899999999999854311122221 1 13446888889999999999999
Q ss_pred HHHHHHh
Q 000149 304 LIRKSCF 310 (2037)
Q Consensus 304 ~i~~la~ 310 (2037)
-|.++|.
T Consensus 203 aL~~l~~ 209 (210)
T 4db6_A 203 ALEKLQS 209 (210)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9988864
No 198
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=90.44 E-value=2.4 Score=47.54 Aligned_cols=123 Identities=20% Similarity=0.120 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC-C---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA-P---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~------~~-p---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2037)
....+|...+.+....|+++.|...+.++... +. | .+....|.+++..|+..+|+..++++++.....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 118 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-- 118 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--
Confidence 55778999999999999999999998887654 22 2 356678899999999999999999987631100
Q ss_pred cccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchHH
Q 000149 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWEK 1488 (2037)
Q Consensus 1417 g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l--------~~~weK 1488 (2037)
...+.+..+.++..+|......|+ .+++...|.+++++ .|....
T Consensus 119 --------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 119 --------------------------LGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred --------------------------cCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 001123457788888887766665 88999999999998 777778
Q ss_pred HHHHHHhhhHH
Q 000149 1489 GYFYMAKYCDD 1499 (2037)
Q Consensus 1489 ~~~~la~y~d~ 1499 (2037)
+++.+|..|-.
T Consensus 171 ~~~~la~~~~~ 181 (283)
T 3edt_B 171 TKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877643
No 199
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.20 E-value=76 Score=44.23 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh--cccHHHHHHHHHHHhHhhhhhhhhhhcccccccc---chhhHHH
Q 000149 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL--NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS---RSNELKL 241 (2037)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~--~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 241 (2037)
.++.+++..|...+.--..++...|.+-+..-+. ..+-..++|.|=.++++- | .... ++.--.+
T Consensus 454 ~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa----------g-~~~~~~E~~~Lp~v 522 (1073)
T 3gjx_A 454 NLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS----------G-AMHEEDEKRFLVTV 522 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT----------T-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH----------C-cCCcccccchHHHH
Confidence 4566666665442210001223334443333322 234778899988888832 1 1111 1111223
Q ss_pred HHHHHHHhhhcC--C--hhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhcc
Q 000149 242 LDVIKLAFTAAD--D--PLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2037)
Q Consensus 242 ~~~~~~~~~~~~--d--~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~ 315 (2037)
+..+-......+ | +-+.=+.+-++|+-.+=...+.+.+.-++-.|++.+..+|+-|...|..-+.++|..|.+.
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 2 2355556668888655555689999999999999999999999999999999998888764
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.12 E-value=0.72 Score=44.48 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
...+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|+
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 455778999999999999999999999888888889999999999888877766655554
No 201
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.59 E-value=2 Score=51.57 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=79.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCcccc---CCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEK---SGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~---~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--- 1116 (2037)
.++...++-+.|..|+.+++..+............. ........+..|..+|..+++.+.+.-.... ...++
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 578888899999999999999876543210000000 0000013456777788888888877666542 11121
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~l 1167 (2037)
.......|...|++++|..+|+++++..|++......+-.|+..+|+++..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223455677888888888888888888888877777777777777777644
No 202
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.14 E-value=1.1 Score=52.45 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=67.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+......+......|....-+. ....+...+|+|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCH
Confidence 4556788999999999999999999999888888889999999999988888777666665444333 334566778888
Q ss_pred hhHHHHhh
Q 000149 1200 DLMDEYLS 1207 (2037)
Q Consensus 1200 d~lee~l~ 1207 (2037)
+.-.+++.
T Consensus 89 ~~A~~~~~ 96 (281)
T 2c2l_A 89 DEAIANLQ 96 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665543
No 203
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.02 E-value=28 Score=41.68 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2037)
...+.+|...|.+....|.++.|.....+|... +. ..+...-+.++...|+.++|+..++++++-.+
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 215 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE---- 215 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 356788999999999999999999998887654 22 12455567888999999999999999876211
Q ss_pred cccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----c-cchHHHH
Q 000149 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-----Q-PMWEKGY 1490 (2037)
Q Consensus 1417 g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l-----~-~~weK~~ 1490 (2037)
...+....+.++..+|.-....|+ .+++++.|++|+++ + |....++
T Consensus 216 --------------------------~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 216 --------------------------AEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred --------------------------HcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 001234567888888888877775 89999999999994 5 6667788
Q ss_pred HHHHhhhH
Q 000149 1491 FYMAKYCD 1498 (2037)
Q Consensus 1491 ~~la~y~d 1498 (2037)
+.+|..|-
T Consensus 268 ~~l~~~~~ 275 (383)
T 3ulq_A 268 FLITQIHY 275 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
No 204
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.97 E-value=7.4 Score=46.81 Aligned_cols=113 Identities=8% Similarity=0.015 Sum_probs=84.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1354 QYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1354 ~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
..+......|.++.|.....+|... +++ .+....|.+++..|+..+|+..++++++-.+.
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------ 175 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE------------ 175 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------
Confidence 3899999999999999999998764 322 35667788999999999999999998763110
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH------HHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE------KGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we------K~~~~la~y~ 1497 (2037)
. .......+.++..+|.-....|+ .+++...|.+|+++.+... .+++.+|..|
T Consensus 176 -------~----------~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 176 -------H----------EAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp -------C----------STTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------C----------ccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 0 00123557888889988877776 8899999999998866443 4666677655
No 205
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.86 E-value=3.9 Score=48.11 Aligned_cols=156 Identities=6% Similarity=-0.039 Sum_probs=89.3
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----h-ccCC-----
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----H-KSLS----- 1116 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r-~~~~----- 1116 (2037)
+..-...+.|..|+-+++..+.-.....++. ..-..+..+..+|..+++++........ . ...+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667889999998887654322111110 0013456677777777777765554321 1 0001
Q ss_pred --hhHHHHHHHhhcCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh----h
Q 000149 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK----T 1184 (2037)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~----~ 1184 (2037)
...-...|+. |++++|..+|+++++..|.. ......+-.++..+|+|+..+.+.+......++... .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 1122345677 99999999999999765432 233445667788899999887776654432221111 0
Q ss_pred -HhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1185 -WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1185 -l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
...-...+...+|+++.-.+++...
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111223445569998877766553
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.79 E-value=1.1 Score=42.64 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchh-hhhhHHHHHHhccChHHHHHHhhhhhccchhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ-RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~-~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+...+...|+|++|..+|+++++..|++.. ....+=.|+..+|+++......+..+...|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456678899999999999999999999988 87788889999999998887777665555543
No 207
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=88.66 E-value=3.9 Score=41.24 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+....|.++.|...+.++... +++ .+....|.+++..|+..+|+..+++++...+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----- 81 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----- 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Confidence 45678899999999999999999988877544 332 35667899999999999999999998752110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|......|+ .+++...|.+++++.+.. ..+++.
T Consensus 82 -------------------------~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 82 -------------------------LKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------hCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 01123457778888888877765 788889999988875432 234445
Q ss_pred HHhhh
Q 000149 1493 MAKYC 1497 (2037)
Q Consensus 1493 la~y~ 1497 (2037)
+|..|
T Consensus 135 la~~~ 139 (164)
T 3ro3_A 135 LGNAY 139 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 208
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.10 E-value=5.1 Score=44.41 Aligned_cols=137 Identities=10% Similarity=-0.029 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC----CchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR----RSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g----~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
...+...+.+....|.++.|...+.+|...+.+.+...-+.++.. | +..+|+..++.+.+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------------- 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------------- 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-------------
Confidence 457888889999999999999999999999999999999988887 6 7899999999885420
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcc--chHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY-TG-QKQKEDVITLYSRVRELQP--MWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~-s~-~~~~~~i~~~Y~~A~~l~~--~weK~~~~la~y~d~l 1500 (2037)
.+.++..+|..+.. .+ ..+.+++++.|++|.+..+ ....+++.+|..|..-
T Consensus 84 -------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 84 -------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 03456666665532 11 4567888888999988887 4578889998876421
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc-CCcc
Q 000149 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-GHKN 1542 (2037)
Q Consensus 1501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~-g~~~ 1542 (2037)
. . .. .-...|+..|-+++.. |+..
T Consensus 139 ~---------g--~~-------~d~~~A~~~~~~A~~~~~~~~ 163 (212)
T 3rjv_A 139 V---------H--GP-------EDDVKASEYFKGSSSLSRTGY 163 (212)
T ss_dssp S---------S--SS-------CCHHHHHHHHHHHHHTSCTTH
T ss_pred C---------C--CC-------CCHHHHHHHHHHHHHcCCCHH
Confidence 0 0 00 0123678888888877 5443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.05 E-value=1.2 Score=41.15 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=45.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
..+...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4466789999999999999998888887777778888899999887776665544444
No 210
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=88.00 E-value=0.94 Score=54.62 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-------------------HHHHHHHHHHHcCCchHHHHHHHHH
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-------------------VHMEKAKLLWSTRRSDGAIAELQQN 1407 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~-------------------~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2037)
..+..|...+..+.+.|+++.|.....+|....+.. +....|..+...|+..+|+..++.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346678899999999999999999998887664332 5567788899999999999999988
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1408 i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+...+ ..++++..+|..+...|+ .+++...|++|++++|...
T Consensus 257 l~~~p------------------------------------~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 257 LTEEE------------------------------------KNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHCT------------------------------------TCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------
T ss_pred HHhCC------------------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCH
Confidence 76211 115567777777766554 7889999999999999888
Q ss_pred HHHHHHHhhhH
Q 000149 1488 KGYFYMAKYCD 1498 (2037)
Q Consensus 1488 K~~~~la~y~d 1498 (2037)
.++..++....
T Consensus 299 ~a~~~L~~l~~ 309 (338)
T 2if4_A 299 AIRRELRALAE 309 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 211
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.93 E-value=50 Score=39.10 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=71.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC------hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1356 AKLCRLAGHYETATRAILEAQASGAP------NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~~~p------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
+.+....|.++.|...+.++...... ......|+++...|+..+|+..++..+...+.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---------------- 285 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---------------- 285 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------
Confidence 45577899999999998887654321 13456789999999999999999988652110
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
.......++++..+|..+...|+ .+++...|.+|..+.+.
T Consensus 286 --------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 286 --------------LRLMSDLNRNLLLLNQLYWQAGR--KSDAQRVLLDALKLANR 325 (373)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred --------------CcchhhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhcc
Confidence 00112346678888988888886 78888889988887664
No 212
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.91 E-value=63 Score=40.25 Aligned_cols=136 Identities=9% Similarity=0.015 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHHc-----CCchHHHHHHHHHhhcCCccccccc
Q 000149 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWST-----RRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~-----g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
...+...+.+..+ .+..+.|...+.+|...+.+.+...-+.++... ++..+|+..++.+++..
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------- 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------- 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------
Confidence 3456677777777 788889998888888888888888888888887 78889999888876420
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~-~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
.+.++..+|......| ..+.+++++.|++|.+. ....+++.+|..|.
T Consensus 327 ------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 327 ------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp ------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 0235666676665543 12467888899999887 35778999998763
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1499 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.-. . .. .-...|+..|-+++..|+..
T Consensus 375 ~g~---------g--~~-------~~~~~A~~~~~~A~~~~~~~ 400 (490)
T 2xm6_A 375 QGK---------G--VK-------KDEQQAAIWMRKAAEQGLSA 400 (490)
T ss_dssp HTS---------S--SC-------CCHHHHHHHHHHHHHTTCHH
T ss_pred cCC---------C--CC-------CCHHHHHHHHHHHHhCCCHH
Confidence 210 0 00 11246899999999887653
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.55 E-value=0.83 Score=57.98 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
+..|...|..+.+.|+++.|..+..+|.+..+ +.+....|..+...|+.++|+..++++++..|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------- 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 44556667778889999999999999987754 45677889999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
..++++..+|.-+...|+ .+++.+.|++|++++|....+|..+|..
T Consensus 72 ----------------------~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 72 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 114466667776666665 7889999999999999988888888765
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.27 E-value=1.3 Score=42.92 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
..+...|+|++|..+|+++++..|++......+=.|+..+|+++......+.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467889999999999999999999998888888999999999987665553
No 215
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=87.26 E-value=3.5 Score=37.95 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
.....|..++..|+..+|+..+++++...+ . .+.++..+|..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~-----------------~~~~~~~l~~~~~ 54 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------N-----------------NAEAWYNLGNAYY 54 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------------C-----------------CHHHHHHHHHHHH
Confidence 445566777777777777777777664211 0 0234555565555
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
..++ .+++++.|.++++++|....+++.+|..+
T Consensus 55 ~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 55 KQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5554 67777778888888887777777777654
No 216
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.11 E-value=2.7 Score=40.26 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHHHHhhhHH
Q 000149 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFYMAKYCDD 1499 (2037)
Q Consensus 1453 ~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~la~y~d~ 1499 (2037)
++..+|..+...|+ .+++++.|.++++++|.. .++++.+|..+..
T Consensus 40 ~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 40 GYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 34444544444443 556666666666666665 5566666665543
No 217
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=86.94 E-value=27 Score=40.31 Aligned_cols=118 Identities=11% Similarity=-0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...|+.-+......|.++.|...+.++....... +..-.+.++..+|+.++|+..++++++.....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------ 148 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------ 148 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------
Confidence 4567788888999999999999888776543221 12234556677889999999999987631100
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---ccchH----HHHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL---QPMWE----KGYFYM 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l---~~~we----K~~~~l 1493 (2037)
.+....+.++..+|......|+ .++++..|.+|.++ .+... .+++.+
T Consensus 149 ------------------------~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 149 ------------------------IDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp ------------------------SCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ------------------------CchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 0111346778888887777665 88999999999854 33221 467777
Q ss_pred HhhhH
Q 000149 1494 AKYCD 1498 (2037)
Q Consensus 1494 a~y~d 1498 (2037)
|..|.
T Consensus 203 g~~y~ 207 (293)
T 2qfc_A 203 AKALY 207 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 218
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.80 E-value=2 Score=54.13 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc---------------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---------------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---------------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
+...+.+.|+|++|..+|+++++..|++ ...+..+=.|+.++|+|+..+.+.+..+...|....-
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4556778999999999999999988877 4566678889999999999888888776666654433
Q ss_pred HhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1185 WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1185 l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
+. ....|...+|+|+.-.+++..+
T Consensus 354 ~~-~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 354 LY-RRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHccCHHHHHHHHHHH
Confidence 33 3456788899999887776654
No 219
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=86.74 E-value=3.7 Score=47.87 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
+..|...|....+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..++++++..|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------- 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------- 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 5678899999999999999999999987764 455777889999999999999999998875211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
..++++..+|.-+...|+ .+++.+.|.+|++++|..
T Consensus 70 ----------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 70 ----------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccc
Confidence 114566777777666664 788888899998888743
No 220
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=86.58 E-value=4.2 Score=45.07 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcC----ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRLAG----HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARKag----~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...+...+.+... | .++.|...+.+|...+.+.+...-+.++.. .++..+|+..++++++..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-------- 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-------- 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT--------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC--------
Confidence 3456677777666 5 789999999999888999999999998887 7889999999998864210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-G-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~-~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
....+.++..+|..+..- + ..+.+++.+.|++|.+. +....+++.+|..|.
T Consensus 121 --------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 121 --------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 002256788888877552 2 45689999999999998 445668999998773
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhH
Q 000149 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQAL 1547 (2037)
Q Consensus 1499 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~l 1547 (2037)
.-. .|... .-...|+..|-+++..|+......+
T Consensus 174 ~g~------------gg~~~----~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 174 QGE------------KGFIE----PNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HCB------------TTTBC----CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCC------------CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 210 00000 0124689999999999987554443
No 221
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.44 E-value=2.9 Score=45.42 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~ 1183 (2037)
....+...|+|++|..+|+++++..|++. .....+-.|+..+|+|+..+.+.+......|....
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 123 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 123 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH
Confidence 34456678888888888888888777654 44556667788888888777776655554444332
Q ss_pred hHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1184 TWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1184 ~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
-+. ....+...+|+|+.-.+++..
T Consensus 124 ~~~-~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 124 ALY-KLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHH-HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcccHHHHHHHHHH
Confidence 222 234455677888776665544
No 222
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.19 E-value=0.41 Score=47.75 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=38.3
Q ss_pred hcCHHHHHHHHHHHHcc---CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1127 SGNWAEVFTSCEQALQM---EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~---~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
.|++++|..+|+++++. .|++.....++-.|+..+|+++..+...+......|+...- ......+-..+|+++.-.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL-RVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCCHHHHH
Confidence 45666666666666665 35555555555556666666665555555444444433221 122234445556655544
Q ss_pred HH
Q 000149 1204 EY 1205 (2037)
Q Consensus 1204 e~ 1205 (2037)
++
T Consensus 82 ~~ 83 (117)
T 3k9i_A 82 EL 83 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=85.85 E-value=4.7 Score=48.59 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=100.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-----hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-----r~~~~--- 1116 (2037)
..+.....-|.|..|+.+++.-..-.....++ ......+..|..+|..+++++........ ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 35667788899999999999876533211111 00124567899999999999987766431 11111
Q ss_pred -----hhHHHHHHHhhcCHHHHHHHHHHHHccCC---Cc---hhhhhhHHHHHHhccChHHHHHHhhhhhc-----cchh
Q 000149 1117 -----LQDELLSNKKSGNWAEVFTSCEQALQMEP---TS---VQRHSDVLNCLLNMCHLQAMVTHVDGLIS-----RIPQ 1180 (2037)
Q Consensus 1117 -----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p---~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~-----~~p~ 1180 (2037)
...-...|...|+|++|..+|+++++..+ +. .....++=.|+..+|+++....+.+.... ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 11234567899999999999999987422 11 12234455678889999988777765544 3343
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1181 ~~~~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
. ......-..+....|+++...+++..
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 22223345667788998887766543
No 224
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=85.74 E-value=1.2 Score=56.52 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++......+-.|+.++|+|+......+......|....-+. ....+...+|+|+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHH
Confidence 34668899999999999999999999888888889999999999888887776666665444333 33556778999988
Q ss_pred HHHHhhcc
Q 000149 1202 MDEYLSGA 1209 (2037)
Q Consensus 1202 lee~l~~~ 1209 (2037)
-.+++..+
T Consensus 93 A~~~~~~a 100 (477)
T 1wao_1 93 ALRDYETV 100 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776543
No 225
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=85.63 E-value=1.5 Score=46.53 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=21.8
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
..|++++|..+|+.+++..|++......+-.|+...|+++....+.+.
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 69 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555555555544444444555555555544444433
No 226
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=85.51 E-value=2.4 Score=45.74 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhh
Q 000149 1451 AKTLLLYSRWIHYTGQKQ--------KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWW 1522 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~--------~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~ 1522 (2037)
+.++..+|.-+.+.++.+ .++++..|.+|++++|+...+|+.+|.-|.++-.- .++ .....
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l----------~P~-~~~a~ 104 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL----------TPD-ETEAK 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------CCC-HHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc----------Ccc-hhhhh
Confidence 334454555444444332 67899999999999999999999999766544210 000 00111
Q ss_pred chHHHHHHHHHHHhccCCcc
Q 000149 1523 FYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1523 ~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.....|+.+|-+|+...+++
T Consensus 105 g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 23457999999999988764
No 227
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=85.08 E-value=1.1 Score=44.41 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=48.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
..|...|++++|..+|+++++..|++......+-.|+..+|+++......+..+...|
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999998888888999999999988777665544333
No 228
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.98 E-value=6.3 Score=43.42 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=34.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
.-+.+.++|.+ .+.+|+..++..|.++-.. + .+.-|..++.|++..||.++...+..+
T Consensus 51 ~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~---~--------~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 51 AVEPLIKALKD-EDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33445666654 4677888887777776321 1 111222334788888888888777764
No 229
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.81 E-value=47 Score=38.02 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=83.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
+.++|-+ .+..|+...+..|.++- ..+ -+.-|..++.|++..||.++...+..+- .
T Consensus 28 L~~~L~~-~~~~vr~~A~~~L~~~~---~~~--------~~~~L~~~l~d~~~~vR~~A~~aL~~l~-----------~- 83 (280)
T 1oyz_A 28 LFRLLDD-HNSLKRISSARVLQLRG---GQD--------AVRLAIEFCSDKNYIRRDIGAFILGQIK-----------I- 83 (280)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHC---CHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHSC-----------C-
T ss_pred HHHHHHc-CCHHHHHHHHHHHHccC---Cch--------HHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------c-
Confidence 5556654 56788888888888763 222 1223344569999999999998887632 0
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.......++..+.+.+..-+|+.+....+.++|.++.... +...-++-.|+..|.++++.||..|..-+-.+
T Consensus 84 --~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 84 --CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp --CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred --ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 0111223444455445566789999999999999853221 11112345577888999999999888877655
No 230
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=84.16 E-value=7.6 Score=46.44 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=98.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCCh-----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSL-----Q 1118 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l-----~ 1118 (2037)
.++|.+....|.|..||..++..+..... + ...+.+-.+..||-.++.+|-+.-+.+.....+. +
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA---E-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS---T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC---c-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 37889999999999999999998653210 0 1235677899999999999999999864332222 1
Q ss_pred HHHH-----H--HHhhc--CHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh--------
Q 000149 1119 DELL-----S--NKKSG--NWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY-------- 1181 (2037)
Q Consensus 1119 ~qil-----~--~E~~G--~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~-------- 1181 (2037)
+.++ . .-..| +.++|...|+.+.+..|+ ......+++|...+|+|+.+-...+-+....|+.
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 2221 1 12224 999999999998887775 2223456669999999997766655443332210
Q ss_pred -hhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1182 -KKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1182 -~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
..+...-.+-.+..+|+ ..++++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 11112223445666786 446666554
No 231
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=83.93 E-value=45 Score=44.97 Aligned_cols=347 Identities=10% Similarity=0.092 Sum_probs=170.1
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchh---hhh--hhhHHHHHHHHHhhcc--cHHHHHHHHHHHhHhhhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV---LLK--TRSEWIKCIEFLLLNK--RKAIRDAFCTQIGYFLQDTV 222 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~---~~~--~~~~w~~~~~~~~~~~--~r~vR~a~~~~~~~~~~~~~ 222 (2037)
+.+-.+|. .....++.....+|.++-.-+..|- ..+ .-.+-++.+-.+|.++ |..+|..++..+...-.++-
T Consensus 333 ~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~ 411 (810)
T 3now_A 333 DILKRLYH-SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE 411 (810)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence 44444444 4446788888888888754322111 111 1123344334444777 88899999999888641111
Q ss_pred hhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc---------------------------
Q 000149 223 LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH--------------------------- 275 (2037)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~--------------------------- 275 (2037)
+-. .-.....++-.+-+.+. ..|+.++.-.+-+++-|..+.+.+
T Consensus 412 vk~--------~lv~d~g~Ip~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~ 482 (810)
T 3now_A 412 CKE--------KLIEDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVD 482 (810)
T ss_dssp HHH--------HHHHCHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHH
T ss_pred HHH--------HHHHccchHHHHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHH
Confidence 100 00111345555555333 467889988899998885533211
Q ss_pred ------chhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHH---
Q 000149 276 ------SQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM--- 345 (2037)
Q Consensus 276 ------~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~--- 345 (2037)
..++. -++-.|+.-|.++++-++-.|..-|.++|.... .+..-+.....++++.-|.+....
T Consensus 483 ~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~--------~r~~Vv~~Gaip~Lv~LL~s~~~~~k~ 554 (810)
T 3now_A 483 FINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE--------LRGKVVQEGGVKALLRMALEGTEKGKR 554 (810)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH--------HHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence 01111 134468888899999999999999999985421 111112223346666666554333
Q ss_pred --HHHHHHHHhCCChHHHHHh-hcccccchhhhccccChhH---HHHHHHHHHHcCC--C-chhHHhh-hHHHHHHHHhc
Q 000149 346 --VREFAEAAFGVETEELVKK-MIPAVLPKLVVSQQDNDQA---VNIINELAKCLNT--D-MVPLIVT-WIPKVLAFALH 415 (2037)
Q Consensus 346 --~~~~~e~ll~~~~~~fL~~-~~~~~LP~LVl~~~~~~~~---~~~i~~ia~~~~~--~-~~~l~~~-~~~~Ila~ll~ 415 (2037)
+..++....+-+.+..... ...-++|.||---..+... ...+..|...... . ...++.. -++.+..++.+
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 3333331112222221110 1112778887643322111 1233444443332 2 3333433 46677766665
Q ss_pred ccc--HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCC-hhhhh
Q 000149 416 QAD--ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNED-LPGFL 492 (2037)
Q Consensus 416 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fl 492 (2037)
... ......+|.-+.... +.+..+.. -...+.-|+.+++..+.+. + +.| .-++ +.+..+++. ....+
T Consensus 635 ~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~-~~g~l~~Lv~LL~s~d~~v-q-~~A--a~AL---anLt~~s~~~~~~ii 704 (810)
T 3now_A 635 DHLYLTRAAAQCLCNLVMSE--DVIKMFEG-NNDRVKFLALLCEDEDEET-A-TAC--AGAL---AIITSVSVKCCEKIL 704 (810)
T ss_dssp CCTTHHHHHHHHHHHHTTSH--HHHHHHHS-SSSHHHHHHHGGGCSSHHH-H-HHH--HHHH---HHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCh--HHHHHHHh-ccCcHHHHHHHhcCCCHHH-H-HHH--HHHH---HHHhCCCHHHHHHHH
Confidence 432 344555555444321 22222321 0122333444566654322 1 111 1222 222221221 22233
Q ss_pred H-HHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000149 493 R-NHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2037)
Q Consensus 493 ~-~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2037)
. ...+..+-. ++.+.+...|++++.++..|..
T Consensus 705 ~~~g~I~~Lv~----LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 705 AIASWLDILHT----LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp TSTTHHHHHHH----HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHH----HHCCCCHHHHHHHHHHHHHHHh
Confidence 3 233333332 3455678888999999888866
No 232
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=83.91 E-value=2.3 Score=41.74 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~ 1176 (2037)
.+...|+|++|..+|+++++..|++......+-.|+..+|+++......+....
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456789999999999999999999888888888899999999887766655433
No 233
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=83.40 E-value=98 Score=38.43 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1349 GNCWLQYAKLCRLAG---HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1349 ~~~WL~~AklARKag---~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
...|...+.+..+.| .++.|...+.+|...+.+.+....+.++.. .++..+|+..++.+++..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------- 397 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---------- 397 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----------
Confidence 356777777777766 677888888888888888888888888888 788889999888876420
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc---cchHHHHHHHHhh
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQ---PMWEKGYFYMAKY 1496 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~---~~weK~~~~la~y 1496 (2037)
.+.++..+|.....- ...+.+++...|++|.+.. |....+++.+|..
T Consensus 398 ----------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 398 ----------------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred ----------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 034566677665541 1456899999999999999 4588889989887
Q ss_pred hHHH
Q 000149 1497 CDDV 1500 (2037)
Q Consensus 1497 ~d~l 1500 (2037)
+.+.
T Consensus 450 ~~~~ 453 (490)
T 2xm6_A 450 TAKQ 453 (490)
T ss_dssp CHHH
T ss_pred CHhH
Confidence 6544
No 234
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=82.84 E-value=2.6 Score=51.62 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHc----------------cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQ----------------MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq----------------~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~ 1183 (2037)
....+.+.|+|++|..+|+++++ ..|.+......+-.|+..+|+|+..+.+.+..+...|+...
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 34556678888888888888887 44555555666777888888888777777766655554433
Q ss_pred hHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1184 TWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1184 ~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
-+. ....+...+|+++.-.+++..
T Consensus 309 a~~-~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 309 ALY-RRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHccCHHHHHHHHHH
Confidence 332 334566777888776665544
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.79 E-value=5.5 Score=54.17 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=120.9
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
.+.|--.|.|+...++..|+++|-.+.+-+|-. ..+-..|..+..+.+++|++..+.+||++. +|.-..+...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~l--- 546 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDL--- 546 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHH---
Confidence 344444556666677878888887776655533 333344444445667889999999999883 3433111100
Q ss_pred ccccccccccccccccHHh-hhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000149 86 ACKLLLNVEDDILSQTVDY-LLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2037)
.+++..+. +..+.+ ..--.-|+.|+.+-+.+ ++. ++..+.+..++.|
T Consensus 547 -i~~L~~~~----dp~vRygaa~alglAyaGTGn~~a--------------------------Iq~-LL~~~~~d~~d~V 594 (963)
T 4ady_A 547 -ITKMLASD----ESLLRYGGAFTIALAYAGTGNNSA--------------------------VKR-LLHVAVSDSNDDV 594 (963)
T ss_dssp -HHHHHHCS----CHHHHHHHHHHHHHHTTTSCCHHH--------------------------HHH-HHHHHHHCSCHHH
T ss_pred -HHHHHhCC----CHHHHHHHHHHHHHHhcCCCCHHH--------------------------HHH-HHHHhccCCcHHH
Confidence 01111101 011111 11122467777763222 555 4445556677889
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
+-+.+.+|.-|+.-.. +. -.+.++.|+.+.+..||.+++-++..+ .++ ......++.
T Consensus 595 RraAViaLGlI~~g~~-e~-------v~rlv~~L~~~~d~~VR~gAalALGli----------~aG-----n~~~~aid~ 651 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY-TT-------VPRIVQLLSKSHNAHVRCGTAFALGIA----------CAG-----KGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHTSSSC-SS-------HHHHTTTGGGCSCHHHHHHHHHHHHHH----------TSS-----SCCHHHHHH
T ss_pred HHHHHHHHHhhccCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHh----------ccC-----CCcHHHHHH
Confidence 9999999998875543 21 234566677899999999999888762 111 123556666
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 245 IKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
+.. ++.-.|+.|....++++|.|+.
T Consensus 652 L~~-L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 652 LDP-LTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHH-HHTCSSHHHHHHHHHHHHHHST
T ss_pred HHH-HccCCCHHHHHHHHHHHHHHhc
Confidence 666 4555677799999999999964
No 236
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=82.30 E-value=10 Score=44.92 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=90.5
Q ss_pred cchhHHHHHHHHHHHccCC-chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhh-hh-hhccccccccchhh
Q 000149 162 EEVQLSCVRVIRRILVHGT-RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTV-LS-SLFLDENASSRSNE 238 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 238 (2037)
.+-+......|..++.... .+...+ .+-|-.++..+|.+++..||..++.+|..+.++.- .. .+..
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~---------- 122 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG---------- 122 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----------
Confidence 3456667788888776432 111222 24454566646699999999999999999763321 11 1111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 000149 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~ 311 (2037)
...+..+-+.+....++.+++..+-+++.|.+....+.+.|.- .+-.|+..|.++++.++..|..-|-++|..
T Consensus 123 ~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1244455555555557889999999999986533222333322 445678888899999999999999999776
No 237
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.29 E-value=15 Score=39.86 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
...+...+.+.++|-+ .+.+|+...+..|.++-.. .. +.-|-.++.|++..||.++...+..+
T Consensus 10 ~~~~~~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~~---~~--------~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD-DSYYVRRAAAYALGKIGDE---RA--------VEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp CCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---GG--------HHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcC-CCHHHHHHHHHHHHhcCCh---hH--------HHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445566767777654 4567888877777765321 10 11122233777788888877777664
No 238
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.28 E-value=12 Score=43.87 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+.++.|+++.|...+.+|... +.+ .+...-+.++.. |+.++|+..+++++.-.+.
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~----- 147 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN----- 147 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-----
Confidence 34567788888899999999998888877543 333 234456777777 9999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
.......+.++..+|..+...|+ .++++..|.+++++.+..
T Consensus 148 -------------------------~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 148 -------------------------EERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHc
Confidence 00122457788888988877776 899999999999987643
No 239
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=82.21 E-value=1.1e+02 Score=38.15 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=68.6
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhh-hhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTV-LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
.+|.+++..+|..+...+..+-.+.- -..++ .....+..+-+.+...+|+.+++....+++.+.......
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34577888888888888877541110 00000 012345556666666678889999999888874322111
Q ss_pred chhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 276 SQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 276 ~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
..+.. -++-.|++.|.++++-++..|..-|.++|...
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 11111 13446899999999999999999999998764
No 240
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=82.08 E-value=12 Score=39.91 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=48.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHcc---CCCc----hhhhhhHHHHHHhccChHHHHHHhhhhhccc-----hhhhhhHhHHH
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQM---EPTS----VQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-----PQYKKTWCMQG 1189 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~---~p~~----~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~-----p~~~~~l~~~~ 1189 (2037)
..+...|++++|..+|+++++. .+++ ......+-.++..+|+++....+.+...... +..........
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4466778888888888887764 3322 1223344556677788876665554332111 11111112234
Q ss_pred HHHHHhcCChhhHHHHhh
Q 000149 1190 VQAAWRLGRWDLMDEYLS 1207 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~ 1207 (2037)
..+.+..|+|+.-.+++.
T Consensus 154 a~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHH
Confidence 566778888887766544
No 241
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=82.03 E-value=1.9e+02 Score=40.82 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh
Q 000149 291 DNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR 338 (2037)
Q Consensus 291 ~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 338 (2037)
.+.++.+|-.|...+.+..++++.. +-..-+..+++.+..++...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ll~~l~~~ 101 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNSVMELIANG 101 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999988887763 33344555777777776654
No 242
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=81.76 E-value=10 Score=45.29 Aligned_cols=137 Identities=8% Similarity=-0.011 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-c-c---CChhH---HHHHHHhhcCH
Q 000149 1059 SLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-K-S---LSLQD---ELLSNKKSGNW 1130 (2037)
Q Consensus 1059 AL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~-~---~~l~~---qil~~E~~G~W 1130 (2037)
|+-++|..+..... ....+..|..||...+++|.+......- . . .+++- .+..+-+.|+-
T Consensus 85 a~~~l~~l~~~~~~------------~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKDKQN------------SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTTSCC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 77888887643210 1233468999999999999998887633 1 1 12222 33457899999
Q ss_pred HHHHHHHHHHHccCC------Cchhhh--hhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1131 AEVFTSCEQALQMEP------TSVQRH--SDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1131 ~~A~~~YE~~Lq~~p------~~~~~~--~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
+.|...++...+..| +.+-.+ .+|+....+-++++......+.+....|+|..... -+.+.+++|+|+..
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l--Lln~~~~~g~~~eA 230 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG--LLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH--HHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH--HHHHHHHcCCHHHH
Confidence 999999998878777 333333 25666666666888888777888777776443222 22389999999999
Q ss_pred HHHhhcc
Q 000149 1203 DEYLSGA 1209 (2037)
Q Consensus 1203 ee~l~~~ 1209 (2037)
++.+...
T Consensus 231 e~~L~~l 237 (310)
T 3mv2_B 231 QGIVELL 237 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987643
No 243
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.41 E-value=7.8 Score=36.50 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHH-HHHHHHHHHHH
Q 000149 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAK-TLLLYSRWIHY 1463 (2037)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak-~~Ll~akwl~~ 1463 (2037)
++.|..+...|+..+|+..++.+++..| . .+. ++..+|..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------------~-----------------~~~~~~~~lg~~~~~ 47 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-------------------V-----------------GKDEAYYLMGNAYRK 47 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-------------------S-----------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-------------------C-----------------cHHHHHHHHHHHHHH
Confidence 5678899999999999999999876321 0 033 66777777666
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
.|+ .+++++.|.++++++|....+|+.
T Consensus 48 ~~~--~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 48 LGD--WQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HTC--HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 665 788999999999999998887743
No 244
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=81.41 E-value=6.8 Score=51.98 Aligned_cols=111 Identities=10% Similarity=0.156 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-C--CChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS-G--APNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~-~--~p~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
....|+.++++.|..|.++.|...+.+|.+. + .+.+.++.|.+-|..|. ..+|-...+.+++..+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---------- 502 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT---------- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----------
Confidence 4567999999999999999999888888765 3 46788899999998765 79999999999874210
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~---weK~~~~la~y 1496 (2037)
. ....+.++++....| ..+.+...|..|++..+. -...|-.|.+|
T Consensus 503 -----------------------~---~~~w~~y~~fe~~~~--~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 -----------------------D---GEYINKYLDFLIYVN--EESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp -----------------------C---HHHHHHHHHHHHHHT--CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred -----------------------c---hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 234566777666555 478889999999998873 44556556554
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.58 E-value=12 Score=40.65 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
+.+.++|. ..+.+|+...+..|.++-.. + .+.-|..++.|++..||.++..++..+
T Consensus 48 ~~L~~~l~-~~~~~vr~~a~~~L~~~~~~---~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 48 EPLIKALK-DEDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44556664 44667888888887776321 1 112233345888888888888887774
No 246
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=79.69 E-value=10 Score=38.05 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
+.+|...+.+....|+++.|...+.++... +++ .+....|.+++..|+.++|+..++++++..+
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 120 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-------- 120 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------
Confidence 467888999999999999999988876543 222 3566778999999999999999999875210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~ 1484 (2037)
...+....+.++..+|.-....|+ .+++.+.|.++.++..
T Consensus 121 ----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 121 ----------------------ELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISR 160 (164)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHT
T ss_pred ----------------------HccchHhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHH
Confidence 000123456778888887777775 6777888888777654
No 247
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=78.97 E-value=21 Score=42.30 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=94.8
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCCc--hhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh--hhhh
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTR--DVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~--~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2037)
.+.+.|+..++.+|+...+.+|..|..+... +..++. .-+..|-.+|. +++..||..++.+|+.+..+. ....
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3566234567789999999999999987652 222221 23345555556 468999999999999987321 1111
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
+... ..+..+-+.+. ..|+.++.-..-+++.++.......+.+.- ++=.|++-|.++++.++..|.+
T Consensus 163 ~~~~----------ggi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~ 231 (296)
T 1xqr_A 163 FLRL----------DGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLG 231 (296)
T ss_dssp HHHT----------THHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred HHHC----------CCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHH
Confidence 1111 22334444343 358889988888888886542222222221 3334888899999999999999
Q ss_pred HHHHHHhh
Q 000149 304 LIRKSCFF 311 (2037)
Q Consensus 304 ~i~~la~~ 311 (2037)
-|.++++.
T Consensus 232 aL~~l~~~ 239 (296)
T 1xqr_A 232 ALCSLVTD 239 (296)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99998644
No 248
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.48 E-value=1.2e+02 Score=42.26 Aligned_cols=284 Identities=11% Similarity=0.137 Sum_probs=140.3
Q ss_pred CCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhh------cCchHHHHHHHHHHhCCChHHHHHhh
Q 000149 292 NPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRL------ASRPIMVREFAEAAFGVETEELVKKM 365 (2037)
Q Consensus 292 ~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l------~~~p~~~~~~~e~ll~~~~~~fL~~~ 365 (2037)
+.++.+|-.|...+.+..++++.. +-..-...+++.+..++.+-- ...|..+..+|.. .-.+.+..
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~---L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~-----La~I~k~~ 143 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKI---LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI-----LVQILKQE 143 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHH-----HHHHHHHh
Confidence 457899999999999988888763 333455567777777766521 2234555666652 33444443
Q ss_pred c----ccccchhhhccccChh----HHHHHHHHHHHcC------------CCchhHHhhhHHHHHHHHhc----cccHHH
Q 000149 366 I----PAVLPKLVVSQQDNDQ----AVNIINELAKCLN------------TDMVPLIVTWIPKVLAFALH----QADERR 421 (2037)
Q Consensus 366 ~----~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~------------~~~~~l~~~~~~~Ila~ll~----~~~~~~ 421 (2037)
. |..+|.|+-.-+.+.. ...++..|.+.+. ..+...+.++++.|+..+.. ...++-
T Consensus 144 ~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~l 223 (1073)
T 3gjx_A 144 WPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPL 223 (1073)
T ss_dssp TTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHH
T ss_pred ChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 3 3334444433221211 1234444444322 22455666788888876541 223444
Q ss_pred HHHHHHHHHhhcC-CChHHHHHhhhHHHHHHHH-HhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHH
Q 000149 422 LLSALEFYCIQTG-SDNQEIFAAALPALLDELI-CFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGL 499 (2037)
Q Consensus 422 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~ell-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGi 499 (2037)
+..+|.-+..... ++...++.. .++.-|+ .++ ++ ++.+ .+ ..+.+..+... +.+...+.+..=|-++
T Consensus 224 v~~~L~~L~~~~sWI~i~~i~~~---~ll~~L~~~~L--~~-~~~r--~a-A~dcL~eIv~k--~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIPLGYIFET---KLISTLIYKFL--NV-PMFR--NV-SLKCLTEIAGV--SVSQYEEQFETLFTLT 292 (1073)
T ss_dssp HHHHHHHHHHHTTTSCTHHHHSS---SHHHHHHHHTS--SS-HHHH--HH-HHHHHHHHHHS--CSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhccc---hHHHHHHHHhc--CC-hHHH--HH-HHHHHHHHHhc--cccchHHHHHHHHHHH
Confidence 4555555444433 244444442 2332221 122 22 2221 11 22334333321 1122233333334455
Q ss_pred HHHhhhhhcCCCChHH--------HHHHHHHHHHHHHHhcc-cccc------chHHHHHHHH-----HHhcCCCcchhhh
Q 000149 500 LNSIDRKMLHAEDLSL--------QKQALKRIEILIEMIGS-HLTT------YVPKILVLLM-----HAINKESLQCEGL 559 (2037)
Q Consensus 500 l~~~~~~l~~~~~~~~--------k~~~l~sl~~li~l~g~-~v~~------~~pqI~a~L~-----saL~~~~L~~~~l 559 (2037)
|+.+...+....++.. -..-+..+..+.--+|. |... +++-+.+.|+ ++.+..++-..||
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf 372 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICL 372 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5544332211111110 02345666666655554 4321 2333334332 2333455668899
Q ss_pred HHHHHHHHHhccCCC-----c----------------chhhHHHHHHHHhhhhccc
Q 000149 560 SVLHFFIEQLSRVSP-----S----------------STKHVISQVFAALIPFLER 594 (2037)
Q Consensus 560 ~~W~~fv~~L~~~~~-----~----------------~l~~ll~~i~~~lip~~~~ 594 (2037)
..|..|.+.|-...+ . ...++++.+...++..+.+
T Consensus 373 ~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 373 EYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998742111 1 1467888888888877754
No 249
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=78.33 E-value=2.6 Score=50.67 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=65.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch-----------------hhhhhHHHHHHhccChHHHHHHhhhhhccchhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV-----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~-----------------~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~ 1182 (2037)
....+.+.|+|++|..+|+++++..|++. ..+..+-.|+..+|+|+..+.+.+..+...|...
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 44556788999999999999998888765 2455677788999999988887776665555443
Q ss_pred hhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1183 KTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1183 ~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
.-+. ....+...+|+|+.-.+++...
T Consensus 265 ~a~~-~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 265 KALF-RRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHH-HHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333 3456778899998888777654
No 250
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=78.33 E-value=5.8 Score=38.21 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.....|...|.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346789999999999999999999999988765 467888899999999999999999999875
No 251
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=78.21 E-value=11 Score=36.65 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccch
Q 000149 1368 ATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLN 1445 (2037)
Q Consensus 1368 A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 1445 (2037)
|...+.++.... .+.+....|.+++..|+..+|+..++.++...|
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------------------------- 50 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------------------------------- 50 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---------------------------------
Confidence 344445554443 345677788888889999999998888875311
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH--HHHHHHHhhhHHH
Q 000149 1446 EKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE--KGYFYMAKYCDDV 1500 (2037)
Q Consensus 1446 ~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we--K~~~~la~y~d~l 1500 (2037)
..+.++..+|..+...|+ .+++...|.+++++.|... .+...+......+
T Consensus 51 ---~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 51 ---TYSVAWKWLGKTLQGQGD--RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp ---TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 013456667777766665 7788888888888887543 2333344444333
No 252
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.55 E-value=24 Score=38.66 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=41.4
Q ss_pred hHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 147 FLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 147 ~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
..-+.+.++|- ..+..|+..++..|.++-. .+. +.-|..++.|++..||.++...+..+-
T Consensus 19 ~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~---~~~--------~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 19 EKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD---ERA--------VEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC---GGG--------HHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC---ccH--------HHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 34455666665 5678899999999887633 121 112333458999999999999998853
No 253
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=77.51 E-value=9.4 Score=40.67 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----C-CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----G-AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVG 1417 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~-~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g 1417 (2037)
..+.+|...+.+.+..|+++.|...+.++... + .+ .+....+.+++..|+.++|+..+++++...+
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----- 138 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ----- 138 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----
Confidence 45677889999999999999999988887554 3 22 2456678999999999999999999875210
Q ss_pred ccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1418 STAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1418 ~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
...+....+.++..+|......|+ .+++.+.|.+|+++...
T Consensus 139 -------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 139 -------------------------QADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp -------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -------------------------hccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHH
Confidence 000122446677788887777765 77788888888776543
No 254
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=75.64 E-value=47 Score=39.68 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=91.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2037)
...+.++...|.+....|.++.|.....+|... +. ..+...-|.++...|+.++|+..++++++-.+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~---- 213 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM---- 213 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----
Confidence 456788899999999999999999988887643 22 12344677889999999999999999876210
Q ss_pred cccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hccchHHHHH
Q 000149 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRE-----LQPMWEKGYF 1491 (2037)
Q Consensus 1417 g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~-----l~~~weK~~~ 1491 (2037)
...+....+.++.-+|.-....|+ .++++..|.+|++ -+|....+++
T Consensus 214 --------------------------~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 214 --------------------------DIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --------------------------HcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 001223557788888887777775 8899999999999 6777778888
Q ss_pred HHHhhhH
Q 000149 1492 YMAKYCD 1498 (2037)
Q Consensus 1492 ~la~y~d 1498 (2037)
.+|..|-
T Consensus 266 ~la~~~~ 272 (378)
T 3q15_A 266 GLSWTLC 272 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887663
No 255
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=73.75 E-value=38 Score=39.03 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1353 LQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
...+.+....|.++.|...+.+|... .++ .+...-+.++...|+.++|+..++++++....
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~----------- 187 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA----------- 187 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------
Confidence 44666777889999999998888643 222 24456788899999999999999998742100
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------hHHHHHHHHhhhH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------WEKGYFYMAKYCD 1498 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~------weK~~~~la~y~d 1498 (2037)
.|. .....+.++.-+|..+...|+ .++++..|.+|+++.+. ...+|+.+|..|.
T Consensus 188 -----~~~-------------~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 188 -----LHD-------------NEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp -----SCC-------------CHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred -----cCc-------------cccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 000 111224677788887777665 89999999999988754 2566777777664
No 256
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=73.64 E-value=28 Score=40.13 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=82.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1355 YAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1355 ~AklARKag~~~~A~~aLl~a~~~~--~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.+..+.|.++.|...+.+|.... .++ +...-+.++...|+.++|+..++++++....
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~------------- 187 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA------------- 187 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------
Confidence 6666677789999999999887642 122 3455677888999999999999998862110
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHHHHhhhH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFYMAKYCD 1498 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~la~y~d 1498 (2037)
.+ ......+.++.-+|......|+ .++++..|.+|+++.+.. ..+|+.+|..|.
T Consensus 188 ---~~-------------~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 188 ---LH-------------DNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp ---SS-------------CCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred ---cc-------------cchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 00 1233567788889988887776 889999999999887654 567777777664
No 257
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=73.22 E-value=17 Score=42.89 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=77.4
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccc-hhhhhhHhHHHHHHHHhcCChhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-PQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~-p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
.+-..|++++|...|+..+...|+++ .+..+-..+.+.++|+.++.+.+...... |........+.-.|.-.+|+++.
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e 189 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE 189 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH
Confidence 35678999999999998888888776 44333335667899998888877554322 11112233344456778999999
Q ss_pred HHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 000149 1202 MDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSK 1252 (2037)
Q Consensus 1202 lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR 1252 (2037)
-.+++.+... | ..++....+..+.+++.-...++.++..+.+++++
T Consensus 190 Al~~l~~a~~-g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 190 AERRLTEAND-S----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHT-S----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888876642 1 11122234445556665566677666666555443
No 258
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=72.90 E-value=2.4e+02 Score=36.95 Aligned_cols=241 Identities=15% Similarity=0.225 Sum_probs=125.4
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHH
Q 000149 283 LILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362 (2037)
Q Consensus 283 l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL 362 (2037)
+-+|++.|...+-.+|..|.+.|..+|...... +-+.+.+.|.-+..+.. +|. +.+|-+
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-------------------~Q~~Il~~p~gi~~Lv~-lL~-d~rE~i 182 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-------------------VQQIILVSPMGVSRLMD-LLA-DSREVI 182 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-------------------HHHHHHHSTTHHHHHHG-GGG-CSSHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-------------------HHHHHHhCcccHHHHHH-HHh-CchHHH
Confidence 456888899999999999999999886665221 12233344555555543 444 234444
Q ss_pred HhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc---ccHHHHHHHHHHHHhhcCCC--h
Q 000149 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ---ADERRLLSALEFYCIQTGSD--N 437 (2037)
Q Consensus 363 ~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~---~~~~~~~~~l~~~~~~~~~~--~ 437 (2037)
+----.+|+.|+... ..|++|-. +.+-|+.++..+-.. +...-+..||..+.+-...+ .
T Consensus 183 RneallLL~~Lt~~n-------~~iQklVA---------FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN 246 (651)
T 3grl_A 183 RNDGVLLLQALTRSN-------GAIQKIVA---------FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN 246 (651)
T ss_dssp HHHHHHHHHHHHTTC-------HHHHHHHH---------HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCC-------HHHHHHHH---------HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH
Confidence 444344445554332 12233211 123455554433322 12356788888888776555 6
Q ss_pred HHHHHh--hhHHHHHHHHHhhcCCCchHH---hhhhcchhHHHHHHhhhcCCCCCh-------hhhhHHHHHHHHHHhhh
Q 000149 438 QEIFAA--ALPALLDELICFVDGGDSDEI---NERLNRVPRVIRKVSTVLTGNEDL-------PGFLRNHFVGLLNSIDR 505 (2037)
Q Consensus 438 ~~~~~~--~~~~~l~ell~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~fl~~~~LGil~~~~~ 505 (2037)
|..|++ .+|.+. -| +..++ +++ .++.+.+.-+++-+.-.+.++..+ ..|.+..++..+-.+-
T Consensus 247 Q~~FrEt~~i~~L~-~L---L~~~~-~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll- 320 (651)
T 3grl_A 247 QNFFKEGSYIQRMK-PW---FEVGD-ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL- 320 (651)
T ss_dssp HHHHHHTTCGGGGG-GG---GCCCS-CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHH-HH---hCCCc-cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH-
Confidence 888884 344433 22 22111 110 112222222333333333333332 2445544555544431
Q ss_pred hhcCCCChHHHHHHHHHHHHHHH---Hhcc-----ccc--cchHHHHHHHHHHhcC---CCcchhhhHHHHHHHH
Q 000149 506 KMLHAEDLSLQKQALKRIEILIE---MIGS-----HLT--TYVPKILVLLMHAINK---ESLQCEGLSVLHFFIE 567 (2037)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~---l~g~-----~v~--~~~pqI~a~L~saL~~---~~L~~~~l~~W~~fv~ 567 (2037)
+...-+...|..+|+.++++|+ .... .+. ..+|-|.+.|.+.+.. .++|..++.|..+|+.
T Consensus 321 -~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 321 -MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp -TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred -ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 1222356788899999999886 1111 111 2457788888877642 2456666666666554
No 259
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=72.31 E-value=3.3e+02 Score=38.42 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHh-----ccccc-cchHHHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh-
Q 000149 519 ALKRIEILIEMI-----GSHLT-TYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP- 590 (2037)
Q Consensus 519 ~l~sl~~li~l~-----g~~v~-~~~pqI~a~L~s-aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip- 590 (2037)
.+..++.+++-+ ++++. ...|+++..|.+ -.+.|-++...+.||..+..-++. .|+.+.+++.-++..+.-
T Consensus 506 ~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~ 584 (1204)
T 3a6p_A 506 MTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFE 584 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccC
Confidence 344555555555 34554 367888887655 346677888999999988887764 578889999988887642
Q ss_pred hccc-CCC---CchhhHHHHHHHHHHHHHHhHHHHH
Q 000149 591 FLER-DKD---NPSVLLNKVVKILEDLVLKNRAILK 622 (2037)
Q Consensus 591 ~~~~-~~~---~~~~~~~~~~~il~~Li~~n~~~L~ 622 (2037)
..+. .+. ..+..+..|...|.+|-.+.++.|.
T Consensus 585 ~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 585 TVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp TTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1110 000 1224567788889999888888875
No 260
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=72.31 E-value=2 Score=53.83 Aligned_cols=134 Identities=10% Similarity=0.041 Sum_probs=51.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
..++.+|...|.|.-|+.|++.-.+..+ ++ .....|...|+.+++.+.++-....-.......-.-.
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~---~~----------~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~ 131 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKKAR---ES----------YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTTCC-----------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCc---cc----------hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566788889999999999987544211 11 2234677788888777776655331111123333445
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
+-..|+|++|..+|..+ .....+..||-.+|+|+....-+.... .| ..|. -...|.-..|+|+...
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~---~~Wk-~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST---RTWK-EVCFACVDGKEFRLAQ 197 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH---HHHH-HHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc---hhHH-HHHHHHHHcCcHHHHH
Confidence 67899999999999854 355688999999999998877666542 22 1221 3356777899998875
Q ss_pred H
Q 000149 1204 E 1204 (2037)
Q Consensus 1204 e 1204 (2037)
.
T Consensus 198 ~ 198 (449)
T 1b89_A 198 M 198 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 261
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=65.69 E-value=2.6e+02 Score=34.66 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=87.2
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLD 229 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~ 229 (2037)
+-++|-. .+.++|......|+++..|.... ...+. .-+.-+-.+|.+++..++..++.++..+.. +
T Consensus 7 lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~---------~ 74 (457)
T 1xm9_A 7 AVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVF---------R 74 (457)
T ss_dssp HHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHS---------S
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc---------C
Confidence 3445544 46789999999999999776532 22222 123333445589999999999999998651 1
Q ss_pred cccccchhhHHH-----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHh--------CCCC--
Q 000149 230 ENASSRSNELKL-----LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQL--------DNPH-- 294 (2037)
Q Consensus 230 ~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L--------~~~n-- 294 (2037)
+ ..++..+ +..+-+.+....|+.++|-..-+++.|......+..+..-++-.|+..| +.++
T Consensus 75 ~----~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 75 S----TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp C----HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred C----HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccch
Confidence 0 1122222 3344454554668899999999999985542222224433445578888 3332
Q ss_pred ------cchHHHHHHHHHHHHhh
Q 000149 295 ------VTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 295 ------~~~~~~a~~~i~~la~~ 311 (2037)
+.+.-.|..-|.++|..
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTS
T ss_pred hcccccHHHHHHHHHHHHHHccC
Confidence 23334788888888764
No 262
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=65.00 E-value=20 Score=36.56 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
+.++| +..+.+|+.+.+..|.++ +... +.-|..+|.|++..||.+++..+..+-.
T Consensus 17 l~~~L-~~~~~~vR~~A~~~L~~~---~~~~---------~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------ 71 (131)
T 1te4_A 17 RGSHM-ADENKWVRRDVSTALSRM---GDEA---------FEPLLESLSNEDWRIRGAAAWIIGNFQD------------ 71 (131)
T ss_dssp ----C-CSSCCCSSSSCCSSTTSC---SSTT---------HHHHHHGGGCSCHHHHHHHHHHHGGGCS------------
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHh---CchH---------HHHHHHHHcCCCHHHHHHHHHHHHhcCC------------
Confidence 33444 345667777766666543 2211 1233445699999999999998877320
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
...+..+...+. -+|+.|....+.++|.++... ++-.|++.|..+++.||..|..-|
T Consensus 72 -------~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~~~---------a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 -------ERAVEPLIKLLE-DDSGFVRSGAARSLEQIGGER---------VRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp -------HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCSHH---------HHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcHH---------HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 123444555443 468889999999999984322 455677888899999998886543
No 263
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=64.48 E-value=67 Score=40.80 Aligned_cols=153 Identities=7% Similarity=-0.017 Sum_probs=102.7
Q ss_pred HHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCCh---------HHHHHHHHHh--c--c
Q 000149 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEP---------DGLSGLARLH--K--S 1114 (2037)
Q Consensus 1048 ~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEp---------Dg~~Gi~~~r--~--~ 1114 (2037)
.+..++|.+..|+..++.-.+.. ..| ....+..|+..|+.-+.. +.+..+.... . .
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~G---v~p--------d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNG---VQL--------SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHT---CCC--------CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC---CCC--------CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 45568999999999998854432 112 235688999999876543 3333343311 1 1
Q ss_pred CC---hhHHHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHH
Q 000149 1115 LS---LQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG 1189 (2037)
Q Consensus 1115 ~~---l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~ 1189 (2037)
|+ .+.-|-.|-+.|++++|...++...+. .|+ ......+|.++.+.|+++......+.+...--......+..-
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 22 223455789999999999999986554 344 444567899999999999887777766543211122234456
Q ss_pred HHHHHhcCChhhHHHHhhccccc
Q 000149 1190 VQAAWRLGRWDLMDEYLSGADEE 1212 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~~~~~ 1212 (2037)
+.+.-+.|++|...+++..+...
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh
Confidence 78889999999999988877654
No 264
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=63.28 E-value=33 Score=39.50 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=86.0
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--h---ccCC-----
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--H---KSLS----- 1116 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r---~~~~----- 1116 (2037)
+....+-+.|..|+.+++........ ++.. . ..-..+..+..+|...++.|.+.-.... . ...+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~--~~~~-~---~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEY--HPEF-Q---QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCC--CHHH-H---HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccC--ChHH-H---HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 55677889999999999987653211 1100 0 0001233467777777777765554331 1 1112
Q ss_pred --hhHHHHHHHhhcCHHHHHHHHHHHHcc---CCCc----hhhhhhHHHHHHhccChHHHHHHhhhhhccchhh-----h
Q 000149 1117 --LQDELLSNKKSGNWAEVFTSCEQALQM---EPTS----VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY-----K 1182 (2037)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~---~p~~----~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~-----~ 1182 (2037)
...-...|...|++++|..+|+++++. .|.+ .....++-.|+.++|+++..+.+.+....-.++. .
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 222345678899999999999999842 2121 2234566678888999988877766433211111 1
Q ss_pred hhHhHHHHHHHHhcC-ChhhHHHHh
Q 000149 1183 KTWCMQGVQAAWRLG-RWDLMDEYL 1206 (2037)
Q Consensus 1183 ~~l~~~~~EAAWrlg-~Wd~lee~l 1206 (2037)
.........+.+.+| .++...++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 122223345566777 345554443
No 265
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.11 E-value=60 Score=37.89 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=55.5
Q ss_pred CCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHH-hhcCCcH-HHHHHHHHHHHHHH
Q 000149 1588 KDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAA-VSKSTIP-SRREAAAEIIQAAK 1659 (2037)
Q Consensus 1588 ~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~-~~kS~~~-~R~~~a~~Il~~~k 1659 (2037)
-.+..|.=-.++|.|+-+++++.+.|++.++.|+..+...||-+.+|..+. ..+|++. .|.+....+..-+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 457777778899999999999999999999999999999999998876653 4566654 44444444444443
No 266
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=62.45 E-value=41 Score=32.66 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHH
Q 000149 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2037)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl 1461 (2037)
.-.++-++.+..+|+..+|+.-++.+++..+.+ ... ....+.++..+|.-+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~-----------------~~~------------~~~~~~i~~~L~~~~ 56 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG-----------------EIS------------TIDKVSVLDYLSYAV 56 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------CCC------------SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc-----------------CCC------------cccHHHHHHHHHHHH
Confidence 446778999999999999999999988642110 000 012355677788877
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000149 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2037)
Q Consensus 1462 ~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~ 1501 (2037)
...|+ .+.++..|++|.++.|....+...++ |+++++
T Consensus 57 ~~~g~--~~~A~~~~~~al~l~P~~~~~~~n~~-~~~~~~ 93 (104)
T 2v5f_A 57 YQQGD--LDKALLLTKKLLELDPEHQRANGNLK-YFEYIM 93 (104)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH
T ss_pred HHccC--HHHHHHHHHHHHhcCCCCHHHHhhHH-HHHHHH
Confidence 77775 78899999999999999998888887 777665
No 267
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=62.28 E-value=22 Score=37.97 Aligned_cols=48 Identities=8% Similarity=0.157 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1446 EKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1446 ~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
..+.-+.....||.|..- .+.+.+...|+.+++++.+..|.|..+|+|
T Consensus 56 ~wrrYI~LWIrYA~~~ei---~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF 103 (161)
T 4h7y_A 56 QNESFARIQVRFAELKAI---QEPDDARDYFQMARANCKKFAFVHISFAQF 103 (161)
T ss_dssp TCHHHHHHHHHHHHHHHH---HCGGGCHHHHHHHHHHCTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456678889999999533 468888999999999999999999999987
No 268
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=60.73 E-value=83 Score=36.29 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=89.3
Q ss_pred hhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhh-----hhHHH-HHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKT-----RSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~-----~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
|..+-.++-+.+ .++---|+-..+.+|..++........... ...++ ..++..+.++...+|.++...+-.++
T Consensus 53 ~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~ 131 (278)
T 4ffb_C 53 YWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC 131 (278)
T ss_dssp TTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 333445455555 344444555677888888775442211111 11122 13444457889999999888777665
Q ss_pred hhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHH-HHHHHhCCCC
Q 000149 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLI-LLVEQLDNPH 294 (2037)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~-~Li~~L~~~n 294 (2037)
+... ....++..+.. ....++|.++..++..++++...-. ++...+.-.++ .|...|+++|
T Consensus 132 ~~~~--------------~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~ 196 (278)
T 4ffb_C 132 GLDT--------------SITQSVELVIP-FFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGD 196 (278)
T ss_dssp HTSS--------------SSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSS
T ss_pred HhcC--------------cHHHHHHHHHH-HHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCc
Confidence 2111 11334445554 3456899999999999998864321 11111111222 3777889999
Q ss_pred cchHHHHHHHHHHHHhhh
Q 000149 295 VTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 295 ~~~~~~a~~~i~~la~~~ 312 (2037)
+-||..|.+.|..+-++.
T Consensus 197 ~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 197 RNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999994443
No 269
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=59.92 E-value=65 Score=32.89 Aligned_cols=119 Identities=10% Similarity=-0.020 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccc
Q 000149 1365 YETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTL 1444 (2037)
Q Consensus 1365 ~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~ 1444 (2037)
++.|...+.+|...+++.+. -+.++...+...+|+..++.+.+. |
T Consensus 11 ~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~------g--------------------------- 55 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL------N--------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT------T---------------------------
T ss_pred HHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC------C---------------------------
Confidence 56778888888888888887 777777777778899999888652 0
Q ss_pred hhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhh
Q 000149 1445 NEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWW 1522 (2037)
Q Consensus 1445 ~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~ 1522 (2037)
.+.++..+|.....- ...+.+.+.+.|++|.+. ....+++.+|..|..= .|. .
T Consensus 56 -----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G-------------~g~-~---- 110 (138)
T 1klx_A 56 -----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG-------------KGV-V---- 110 (138)
T ss_dssp -----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT-------------SSS-C----
T ss_pred -----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC-------------CCC-C----
Confidence 044677777766441 145688999999999887 4578899999876320 000 0
Q ss_pred chHHHHHHHHHHHhccCCcch
Q 000149 1523 FYVPDVLLFYAKGLHRGHKNL 1543 (2037)
Q Consensus 1523 ~~l~~ai~~Yl~sl~~g~~~~ 1543 (2037)
.-...|+..|-+++..|+...
T Consensus 111 ~d~~~A~~~~~~Aa~~g~~~A 131 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLGSEDA 131 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHH
Confidence 123468999999999887643
No 270
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=59.60 E-value=1.9e+02 Score=33.26 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=92.3
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSL 226 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~ 226 (2037)
.+.++|| .+..+.|+.-++.+|-.+++-...... +.+..+-++.+ +.++|+-|=.-|-+.+..++
T Consensus 36 ~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL-------- 103 (265)
T 3b2a_A 36 FLILELA-GEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLV-------- 103 (265)
T ss_dssp HHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHH-hccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--------
Confidence 4456666 556678999999999999998543322 12222344444 48889888888888888877
Q ss_pred ccccccccchhhHHHHHHHHHHhhh---cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTA---ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
.+..-+ .+.+.++-+++.. -.++-+.|-..+.+|-+ + +....-...-.+.-|+ .+.|.-++++|.+
T Consensus 104 -e~vpL~-----~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~~~~~~V~~~l~sLl---~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 -KDVPMG-----SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PLEDSKLVRTYINELV---VSPDLYTKVAGFC 172 (265)
T ss_dssp -TTCCBC-----HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BSCCCHHHHHHHHHHH---TCSSHHHHHHHHH
T ss_pred -cCCCCC-----HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cccchHHHHHHHHHHH---hCCChhHHHHHHH
Confidence 322222 2335555555554 46666888888888886 3 3333333333334444 9999999999999
Q ss_pred HHHHHHhhh
Q 000149 304 LIRKSCFFH 312 (2037)
Q Consensus 304 ~i~~la~~~ 312 (2037)
.+.++|-+.
T Consensus 173 ~L~eia~~S 181 (265)
T 3b2a_A 173 LFLNMLNSS 181 (265)
T ss_dssp HHHHHGGGC
T ss_pred HHHHhhccc
Confidence 999996543
No 271
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=59.04 E-value=38 Score=43.05 Aligned_cols=159 Identities=13% Similarity=-0.022 Sum_probs=96.9
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHhc----cCChhH--HHH-HHH---------hhcCHHHHHHHHHHHHcc--CCCch
Q 000149 1087 EDVSFLMEIYSFLDEPDGLSGLARLHK----SLSLQD--ELL-SNK---------KSGNWAEVFTSCEQALQM--EPTSV 1148 (2037)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDg~~Gi~~~r~----~~~l~~--qil-~~E---------~~G~W~~A~~~YE~~Lq~--~p~~~ 1148 (2037)
..+..+++.|+.-++.+.+..+..... .++... .++ .+- +.|..+.|...|+...+. .|+ .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-E 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-H
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-H
Confidence 457788899999999999888865221 122211 111 122 345578899999876554 344 3
Q ss_pred hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHH
Q 000149 1149 QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMD 1228 (2037)
Q Consensus 1149 ~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~ 1228 (2037)
.....+++++.+.|+++......+.+...--......+...+.+.-+.|+++...+++..+...|+ . ++. .
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----~-Pd~----~ 176 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----V-PEE----P 176 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----C-CCH----H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----C-CCH----H
Confidence 344678899999999998877776654431111122234557778889999998888877765441 1 111 1
Q ss_pred HHHHHH-H-HHcCCcchHHHHHHHHHHHH
Q 000149 1229 VAKILQ-A-MMKKDHFSVSDKIGVSKQVL 1255 (2037)
Q Consensus 1229 l~kaLl-a-l~~~d~~~f~~~I~~aR~~l 1255 (2037)
.+.+|+ + .+.++.+++.+.+++.|...
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 222332 2 34567777777777776543
No 272
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=58.41 E-value=7.5 Score=41.93 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQ 1165 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~ 1165 (2037)
..++.++|++|..+|+++++..|++.+....|=.||.++|+++
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc
Confidence 4578899999999999999999999998887778999998875
No 273
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=56.20 E-value=76 Score=39.37 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHH---HHHHhhcCCChHHHHHHHHHHHcC---CchHHHHHHHHHhh
Q 000149 1350 NCWLQYAKLCRLAGHYETATRA---ILEAQASGAPNVHMEKAKLLWSTR---RSDGAIAELQQNLL 1409 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~a---Ll~a~~~~~p~~~iE~AKLLW~~g---~~~~Ai~~L~~~i~ 1409 (2037)
..+...+.+.+..|.++.+... +.++...++|.+...-+.++...| +..+|+..++.+.+
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 3567777788888866666555 333444567778888888888888 78888888888765
No 274
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=55.98 E-value=5.6e+02 Score=35.30 Aligned_cols=64 Identities=20% Similarity=0.112 Sum_probs=55.1
Q ss_pred cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHhhhhcc
Q 000149 252 ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVE--QLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2037)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~--~L~~~n~~~~~~a~~~i~~la~~~~~~ 315 (2037)
...|.|+-|.++++|+-..=...+.+.+.-+|-.++. -+.++|.-|+..|...+.++|+.+++.
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 5779999999999999765555678999888888999 777889999999999999999988764
No 275
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=55.84 E-value=21 Score=45.48 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=61.8
Q ss_pred HHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-----hccC--------
Q 000149 1049 ASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSL-------- 1115 (2037)
Q Consensus 1049 aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-----r~~~-------- 1115 (2037)
....-|.|..|+-++|..+........+. ....-..+..|..+|...++.|.+.-.... ...+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT----NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34566889999999998766543322111 011124578999999999999988776431 1111
Q ss_pred -ChhHHHHHHHhhcCHHHHHHHHHHHHc
Q 000149 1116 -SLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2037)
Q Consensus 1116 -~l~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2037)
++..-...|.+.|+|++|...|+++|.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 244456778899999999999999985
No 276
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=55.57 E-value=5.6e+02 Score=35.25 Aligned_cols=304 Identities=12% Similarity=0.174 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--cccchhHHH
Q 000149 204 KAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAV--DVHSQHFLF 281 (2037)
Q Consensus 204 r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~--~~~~e~~~~ 281 (2037)
+.=|.+++..+..++.+.+ ..... ...+++-++.++...+++ |..++.++.|+... ...-|-+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNI---------IEHDV-PEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSC---------SSSSC-CHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHhccc---------ccccc-chhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccchH
Confidence 5556666677777663332 11111 148999999999988888 99999999997333 224466655
Q ss_pred HH-HHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHH--hhcCchHH---HHHHHHHHhC
Q 000149 282 LL-ILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSV--RLASRPIM---VREFAEAAFG 355 (2037)
Q Consensus 282 ~l-~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~l~~~p~~---~~~~~e~ll~ 355 (2037)
.+ -.+++.+|.....||..|-.-+..+++.-+. +.+ +. +.+.|+.++-. ..+++--. +..+++
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~--~a~---~~--~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~---- 163 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP--VAI---KA--LLPHLTNAIVETNKWQEKIAILAAFSAMVD---- 163 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG--GGH---HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH--HHH---HH--HHHHHHHHhccccchHHHHHHHHHHHHHHH----
Confidence 44 3488999999999999999999998776633 211 11 22344555421 12222211 233332
Q ss_pred CChHHHHHhhcccccchhh---hccccC--hhHHHHHHHHHH-HcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHH
Q 000149 356 VETEELVKKMIPAVLPKLV---VSQQDN--DQAVNIINELAK-CLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFY 429 (2037)
Q Consensus 356 ~~~~~fL~~~~~~~LP~LV---l~~~~~--~~~~~~i~~ia~-~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~ 429 (2037)
.. .+-+...+|.++|.+= .+-|.+ ..+.+++..+|. .-|.|+.+++ |.++.- -..|+++.+|++-+
T Consensus 164 ~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~---~~~p~~~~~~~~~l 235 (986)
T 2iw3_A 164 AA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQC---IADPTEVPETVHLL 235 (986)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHH---HHCTTHHHHHHHHH
T ss_pred Hh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHH---hcChhhhHHHHHHh
Confidence 12 4556666666666542 222221 113467777776 3455565544 222111 12457799999888
Q ss_pred HhhcCC-Ch-HHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhh
Q 000149 430 CIQTGS-DN-QEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM 507 (2037)
Q Consensus 430 ~~~~~~-~~-~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l 507 (2037)
.+-|-- +. ...++=..|-+.. -+.+. .-+.+|.+ .--+..|.+.+.++.+.+.||..=+=|+-...+
T Consensus 236 ~~~tfv~~v~~~~l~~~~p~l~r----~l~~~--~~~~~r~~--~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~--- 304 (986)
T 2iw3_A 236 GATTFVAEVTPATLSIMVPLLSR----GLNER--ETGIKRKS--AVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA--- 304 (986)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHH----HHTSS--SHHHHHHH--HHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT---
T ss_pred hcCeeEeeecchhHHHHHHHHHh----hhccC--cchhheee--EEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh---
Confidence 865421 11 1112211222222 22222 22223433 123456778888889999999888778766654
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccc---------cchHHHHHHHHHHhcC
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLT---------TYVPKILVLLMHAINK 551 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~---------~~~pqI~a~L~saL~~ 551 (2037)
...+.+.+.-+-+++..|.+..+.... .-.-.+.+++...+..
T Consensus 305 -~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 305 -TIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp -TCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred -ccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 224567788888999999998765222 1245567778888764
No 277
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=53.39 E-value=5.8e+02 Score=34.74 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHhhhHHHHHHHHHhhcCCC-chHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH
Q 000149 440 IFAAALPALLDELICFVDGGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ 518 (2037)
Q Consensus 440 ~~~~~~~~~l~ell~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~ 518 (2037)
.+...++.++..|+..+.... ..+.......+..++..+.... .+.+..|+.+=+--++..++...-++++......
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~--~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 618 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS--EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHY 618 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH--TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 345566777777765555431 0000001112445555544333 2444455443222222333332223445555567
Q ss_pred HHHHHHHHHHHhcc-ccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHh
Q 000149 519 ALKRIEILIEMIGS-HLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQL 569 (2037)
Q Consensus 519 ~l~sl~~li~l~g~-~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L 569 (2037)
++.+|+.+++..|+ .+..+.+.+|-.+...|+. .++...++..|..++...
T Consensus 619 ~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 619 TFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 89999999988665 5677788888888888864 478888999999998875
No 278
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=52.83 E-value=46 Score=44.02 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=66.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
+.+|+.|++.+.+..|...+... ..++.|..+|..+++++.+.-+...
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~--------------------~d~~~l~~l~~~~~~~~~~~~~~~~------------ 732 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNA--------------------HDLESLFLLHSSFNNKEGLVTLAKD------------ 732 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--------------------TCHHHHHHHHHHTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc--------------------cChhhhHHHHHHcCCHHHHHHHHHH------------
Confidence 57899999999999998888753 2367899999999999987766432
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
.+..|++..|..+|... .++ ...++++.++++|+.....++.
T Consensus 733 a~~~~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 733 AETTGKFNLAFNAYWIA-----GDI---QGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHTTCHHHHHHHHHHH-----TCH---HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHc-----CCH---HHHHHHHHHcCChHHHHHHHHH
Confidence 35677788888777531 112 2456777789999988777765
No 279
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=52.63 E-value=25 Score=34.28 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHHhhcCHHHHHHHHHHHHccC-------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQME-------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~-------p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
.+-..|+|..|..||+.+++.. +...+....+-.|+.++|+++..+.+.+..+.-.|+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3567899999999999998742 223444556778999999999888887776655554
No 280
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.84 E-value=2.8e+02 Score=32.98 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.++...|++-...|.++.|...+.++... ++ ..+.+..++++...|+..+|...+++++...+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----- 207 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS----- 207 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-----
Confidence 45778999999999999999999988876532 22 136778899999999999999999988652100
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL 1482 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l 1482 (2037)
.+ ......|+.+...|......+ ...++.+.|.++.+.
T Consensus 208 -----------~~-------------~~~~~~~~~~~~~g~~~~~~~--~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 208 -----------IY-------------CPTQTVAELDLMSGILHCEDK--DYKTAFSYFFESFES 245 (434)
T ss_dssp -----------SC-------------CCHHHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHH
T ss_pred -----------CC-------------CchHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence 00 012345777777777654433 466666666666544
No 281
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=50.88 E-value=3.7e+02 Score=31.69 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc--ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHh
Q 000149 1129 NWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC--HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2037)
Q Consensus 1129 ~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg--q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l 1206 (2037)
.-++|+.+++.+|+..|++.+.-...=.+|..+| .++.-+...+.++...|....-|.. -.|=. ....
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~---------R~~iL-~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY---------RQLII-GQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH---------HHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH---------HHHHH-HHHH
Confidence 3368999999999999998876555567888999 8888888888887777765443332 22211 1111
Q ss_pred hcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHH
Q 000149 1207 SGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDF 1286 (2037)
Q Consensus 1207 ~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~ 1286 (2037)
..... ...+...+. .+..+.+.+...+..= .-|.-++..+.. +. .-.||+-+
T Consensus 118 ~~l~~----------~~~~~~EL~-~~~~~l~~~pkny~aW--~~R~~vl~~l~~-----~~----------~~~EL~~~ 169 (306)
T 3dra_A 118 ELNNN----------DFDPYREFD-ILEAMLSSDPKNHHVW--SYRKWLVDTFDL-----HN----------DAKELSFV 169 (306)
T ss_dssp HHTTT----------CCCTHHHHH-HHHHHHHHCTTCHHHH--HHHHHHHHHTTC-----TT----------CHHHHHHH
T ss_pred Hhccc----------cCCHHHHHH-HHHHHHHhCCCCHHHH--HHHHHHHHHhcc-----cC----------hHHHHHHH
Confidence 11000 001111111 1111111111111100 012222222211 00 11455544
Q ss_pred HHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChh------hhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHH
Q 000149 1287 HAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLW------AREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2037)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~------~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklAR 1360 (2037)
...+... + .-...|..|--++..--+ ..+.+=...+++.. +..-.+.|.....+..
T Consensus 170 ~~~i~~d-----~---------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 170 DKVIDTD-----L---------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK----CPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHHHHC-----T---------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHH
T ss_pred HHHHHhC-----C---------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh----CCCCccHHHHHHHHHH
Confidence 4443210 0 012468888666544322 22333333443322 1233578999999999
Q ss_pred HcCChHHHHHH-HHHHhhc-----CCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1361 LAGHYETATRA-ILEAQAS-----GAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1361 Kag~~~~A~~a-Ll~a~~~-----~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+.|+...+... ..++... ..+.+---.|+++-++|+.++|+..++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99986544433 3333222 2445555678888889999999999988764
No 282
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=48.22 E-value=31 Score=43.14 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=50.3
Q ss_pred HHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----h-ccC-------
Q 000149 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----H-KSL------- 1115 (2037)
Q Consensus 1048 ~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r-~~~------- 1115 (2037)
+.+...|.|..|+-++|..+........+. ....-..+..|..+|...++.|.+.-.... + +..
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDS----NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChh----chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 445567889999999998766543322111 001113456677777766666665554321 0 010
Q ss_pred --ChhHHHHHHHhhcCHHHHHHHHHHHHc
Q 000149 1116 --SLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2037)
Q Consensus 1116 --~l~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2037)
++..-...|.+.|+|++|...|+++++
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 123344556666666666666666654
No 283
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=44.47 E-value=13 Score=42.50 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=39.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHH
Q 000149 507 MLHAEDLSLQKQALKRIEILIEMIGS-----HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQ 568 (2037)
Q Consensus 507 l~~~~~~~~k~~~l~sl~~li~l~g~-----~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~ 568 (2037)
+++.+|...|.+++..|++|++-|.+ -+.-+.|.|+..+++. ++...-.|++|-..++..
T Consensus 41 LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHTT
T ss_pred HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcC
Confidence 35677788899999999999999633 3556778887655322 223334455555555554
No 284
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=44.41 E-value=83 Score=39.92 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=62.0
Q ss_pred hhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhh-----cC--CCh---HHHHHHHHHHHcCCch
Q 000149 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA-----SG--APN---VHMEKAKLLWSTRRSD 1398 (2037)
Q Consensus 1329 e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~-----~~--~p~---~~iE~AKLLW~~g~~~ 1398 (2037)
+..|.+|..+|++.+ ..++.+.-..|.+.+..|+++.|.....++.. +| .|. ....-|.++|.+|+..
T Consensus 333 ~~aL~~~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~ 410 (490)
T 3n71_A 333 RECLEKQEPVFADTN--LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIE 410 (490)
T ss_dssp HHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH
Confidence 456677777777764 36788889999999999999999887776542 23 444 3445789999999999
Q ss_pred HHHHHHHHHhh
Q 000149 1399 GAIAELQQNLL 1409 (2037)
Q Consensus 1399 ~Ai~~L~~~i~ 1409 (2037)
+|...++++++
T Consensus 411 eA~~~~~~Al~ 421 (490)
T 3n71_A 411 VGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 285
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=44.12 E-value=4.5e+02 Score=31.59 Aligned_cols=139 Identities=9% Similarity=0.065 Sum_probs=75.6
Q ss_pred ccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhH
Q 000149 161 SEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNEL 239 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (2037)
+.++|......|..+..+.... ..+.....-+..|-.+|.+++..+|+.++.++..+-. + .+..++.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~----------~--~~~~~k~ 164 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW----------R--ADVNSKK 164 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT----------T--CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhc----------c--CCHHHHH
Confidence 3455666666666666554322 1111111123344445578888999999888887531 0 0111221
Q ss_pred -----HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh-cccchhH--HHHHHHHHHHhCCCCcc----hHHHHHHHHHH
Q 000149 240 -----KLLDVIKLAFTAADDPLILETLLESTAELMMAV-DVHSQHF--LFLLILLVEQLDNPHVT----VRMNASRLIRK 307 (2037)
Q Consensus 240 -----~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-~~~~e~~--~~~l~~Li~~L~~~n~~----~~~~a~~~i~~ 307 (2037)
..+..+-+.+....++.+++..+-++..+.... +.+.++. .-++-.|++.|.+++.. ++..|.--|.+
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 234455555555677889998777777763211 1112221 12455577777766542 66677777777
Q ss_pred HHhh
Q 000149 308 SCFF 311 (2037)
Q Consensus 308 la~~ 311 (2037)
+|.+
T Consensus 245 Ls~~ 248 (354)
T 3nmw_A 245 VSSL 248 (354)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
No 286
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.68 E-value=3.5e+02 Score=31.40 Aligned_cols=139 Identities=13% Similarity=0.048 Sum_probs=87.8
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHH----HhhhcCChhHHHHHHHHHHHHHhhhc
Q 000149 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKL----AFTAADDPLILETLLESTAELMMAVD 273 (2037)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2037)
.|-++|=.-|.+++-.+...++. ....-...+|.+.+ .+- -+++.+...+|+.+..+..+..
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~-------------~~~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~ 119 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADT-------------SPRSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIR 119 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHH-------------CHHHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhh-------------ChHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHH
Confidence 34778888899998888886521 01111333333332 222 3589999999999998754332
Q ss_pred cc-----chhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHH
Q 000149 274 VH-----SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVRE 348 (2037)
Q Consensus 274 ~~-----~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~ 348 (2037)
.. ..--...+=.||+.||.++..+|..+...+..++.-. ++ ..+|+++..-+.++--.+++
T Consensus 120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---------~~-----~~v~~~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---------GP-----LKMTPMLLDALKSKNARQRS 185 (266)
T ss_dssp HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---------CH-----HHHHHHHHHGGGCSCHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---------CH-----HHHHHHHHHHHccCCHHHHH
Confidence 11 1112345566999999999999999998887775332 22 36788888888877655555
Q ss_pred HHHHHhCCChHHHHHhhcccccc
Q 000149 349 FAEAAFGVETEELVKKMIPAVLP 371 (2037)
Q Consensus 349 ~~e~ll~~~~~~fL~~~~~~~LP 371 (2037)
=| .+.+...+..|=++
T Consensus 186 e~-------l~~l~~li~~~G~~ 201 (266)
T 2of3_A 186 EC-------LLVIEYYITNAGIS 201 (266)
T ss_dssp HH-------HHHHHHHHHHHCSG
T ss_pred HH-------HHHHHHHHHhcCCC
Confidence 44 34444444445554
No 287
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=43.64 E-value=1.9e+02 Score=33.89 Aligned_cols=105 Identities=9% Similarity=-0.048 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1353 LQYAKLCRLAGHYETATRAILEAQASGAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~a~~~~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
...+-++-+.|+++.|...+..+....+| .+.+-.+..+-..|+..+|+..+++.+...
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~----------------- 201 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP----------------- 201 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-----------------
Confidence 44456899999999999999877665544 256667788999999999999999886310
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
..| .....+.+.+|.-+.+.|+ .+++...|+++...+|. ++++..|
T Consensus 202 ---~~P-------------~~~~da~~~~glaL~~lGr--~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 202 ---AGE-------------ACARAIAWYLAMARRSQGN--ESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp ---TTT-------------TTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred ---CCc-------------cccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 000 0124567777887888886 89999999999999999 8877766
No 288
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=42.04 E-value=1.7e+02 Score=31.81 Aligned_cols=65 Identities=5% Similarity=-0.109 Sum_probs=51.7
Q ss_pred CCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 631 Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
-|+....-++-..++... ...++.++.+.+|++|-|+.|.++||.=|..+.+.....+|..+.+.
T Consensus 28 ~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp SCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred CcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 456655566666666542 46789999999999999999999999999999999888788766544
No 289
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=41.44 E-value=1.7e+02 Score=31.38 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=52.9
Q ss_pred ccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 626 HEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 626 ~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
.+...-|+....-++...++.. ....++.++.+.+|++|.|+.|.++||.=|..+.+.....++..+.+.
T Consensus 25 s~~~~~~Dw~~~leicD~I~~~--~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~ 94 (163)
T 1x5b_A 25 NEYNTTEDWSLIMDICDKVGST--PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR 94 (163)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH
T ss_pred CCCCCCcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 3333345666656666666653 356789999999999999999999999999999988777777666543
No 290
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=39.34 E-value=26 Score=40.42 Aligned_cols=46 Identities=35% Similarity=0.294 Sum_probs=37.5
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchh
Q 000149 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISF 66 (2037)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (2037)
+++.-.++|+..+||..|+..+|.. .|..+.+|....|+...+..|
T Consensus 53 ~l~~~ll~d~~~~VR~~AA~~l~~~--------------~l~~L~~D~~~~VR~~aA~~L 98 (244)
T 1lrv_A 53 HLAVQYLADPFWERRAIAVRYSPVE--------------ALTPLIRDSDEVVRRAVAYRL 98 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSCGG--------------GGGGGTTCSSHHHHHHHHTTS
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCHH--------------HHHHHccCcCHHHHHHHHHHC
Confidence 4455567999999999999988643 277889999999999999764
No 291
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=37.93 E-value=1.3e+02 Score=37.35 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccC-----CCchh---hhhhHHHHHHhccChHHHHHHhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQME-----PTSVQ---RHSDVLNCLLNMCHLQAMVTHVD 1172 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~-----p~~~~---~~~glL~CL~~Lgq~~~ll~~~~ 1172 (2037)
.+-.+...|+|++|...|+++|+.. |++.. ....+..-+.++|+|+....+.+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~ 353 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGT 353 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4555678899999999999999743 33321 12233344455677766555443
No 292
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.40 E-value=5.8e+02 Score=30.15 Aligned_cols=162 Identities=10% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCC------hhhHHHHHHHHhhCCChHHHHHHHHH----hccCC
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFE------DEDVSFLMEIYSFLDEPDGLSGLARL----HKSLS 1116 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~------~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~~~~ 1116 (2037)
|+...+-|.|..|+-++..-+...+...+.. ...+... ...+..|..+|...+++|.+...... +...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-AGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-SSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhH-HHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 6777889999999999988766543321110 0001100 12367899999999999998877532 11111
Q ss_pred h------hHH--HHHHHhhcCHHHHHHHHHHHHccCCC------chhhhhhHHHHHHhccChHHHHHHhhhhhcc---ch
Q 000149 1117 L------QDE--LLSNKKSGNWAEVFTSCEQALQMEPT------SVQRHSDVLNCLLNMCHLQAMVTHVDGLISR---IP 1179 (2037)
Q Consensus 1117 l------~~q--il~~E~~G~W~~A~~~YE~~Lq~~p~------~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~---~p 1179 (2037)
- -.. ...+...|+++.|...|+.+++..+. .......+-+.+.+.|+|+......+.+... ..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 0 011 12346779999999999998753221 1223345667788889998887776654321 11
Q ss_pred --hhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1180 --QYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1180 --~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
....+........-..+|+|+....++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111223334456677899999998887653
No 293
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=37.22 E-value=1.6e+02 Score=31.31 Aligned_cols=64 Identities=6% Similarity=-0.097 Sum_probs=48.7
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++.. +...++..+.+.+|++|.|+.|.++||.=|..+.+.....+|.-+.+.
T Consensus 27 ~dw~~ileicD~I~~~--~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~ 90 (149)
T 3g2s_A 27 LDWASINGFCEQLNED--FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF 90 (149)
T ss_dssp CCHHHHHHHHHHGGGS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 4444444444444432 346789999999999999999999999999999998888788766554
No 294
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=36.79 E-value=1.8e+02 Score=29.40 Aligned_cols=101 Identities=7% Similarity=-0.074 Sum_probs=71.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccccccccccCCC
Q 000149 1355 YAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLV 1430 (2037)
Q Consensus 1355 ~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~ 1430 (2037)
.+.+....+..+.|.....+|...+.+.+...-+.++.. .++..+|+..++.+.+. |
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g------------- 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------N------------- 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------T-------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------C-------------
Confidence 455555556667788888898888999999999999988 78899999999988652 0
Q ss_pred CCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1431 PLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1431 ~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
.+.++..+|.....- ...+.+.+.+.|++|.+... ..+.+.+|+
T Consensus 92 -------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~~ 137 (138)
T 1klx_A 92 -------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILNN 137 (138)
T ss_dssp -------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC--
T ss_pred -------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHhh
Confidence 034566677655431 14568888899999988753 345555443
No 295
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=36.71 E-value=3.7e+02 Score=30.64 Aligned_cols=138 Identities=4% Similarity=0.022 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHccCCchhh----hhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh
Q 000149 163 EVQLSCVRVIRRILVHGTRDVL----LKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2037)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~----~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2037)
..|...++.|..++.....+.. .........++...+.|++-.|-..+...+..|++.... ....+...
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~-------~~~~~~~~ 96 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS-------SSLKNAHN 96 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC----------CCHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh-------hhcccchh
Confidence 3578899999998877553321 111222223445566999999999999999988732221 11111111
Q ss_pred ----HHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 239 ----LKLLDVIKLA-FTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 239 ----~~~~~~~~~~-~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
..++..+..- +.. ..+.+.+..+.++-.++... ...+. ++-.++..|.+.||-++.-+..-|..+-..+
T Consensus 97 ~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~-~~~~~---~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLD-TSITQ---SVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTS-SSSHH---HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhc-CcHHH---HHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 2233333332 333 33557777777776664322 22222 2445778999999999999999998875544
No 296
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=36.35 E-value=92 Score=38.83 Aligned_cols=151 Identities=9% Similarity=0.111 Sum_probs=94.7
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCCch---h---hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRD---V---LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~---~---~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2037)
.+..+|-...+++++-++..+|..+....... + .+.. ..-+..|-.||.+++..||..++..++.+-.++-..
T Consensus 287 ~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~-~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK-EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT-SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH-cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 36677877777899999999999998754321 1 1110 112345666779999999999999999864222111
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCC-----hhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCC-Ccc
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADD-----PLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNP-HVT 296 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~-n~~ 296 (2037)
..+ ....+-.+.+.+...+. +.++...+.+++.|..+.......+. -++=.|++-+.+. |.-
T Consensus 366 ~~i----------~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 366 RVM----------GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HHH----------HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred HHH----------HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 111 12344555565554422 35777888888887543222222221 2455577777888 899
Q ss_pred hHHHHHHHHHHHHhhh
Q 000149 297 VRMNASRLIRKSCFFH 312 (2037)
Q Consensus 297 ~~~~a~~~i~~la~~~ 312 (2037)
++-.|+..|.+++.+.
T Consensus 436 i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHcch
Confidence 9999999998886443
No 297
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.12 E-value=93 Score=29.86 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHcCC---chHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHH
Q 000149 1380 APNVHMEKAKLLWSTRR---SDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLL 1456 (2037)
Q Consensus 1380 ~p~~~iE~AKLLW~~g~---~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll 1456 (2037)
+|++...+|..+.-.++ ..+|...|+++++..| ...++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp------------------------------------~~~rA~~~ 48 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP------------------------------------YNEAALSL 48 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT------------------------------------TCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc------------------------------------CCHHHHHH
Confidence 45566667777764444 5677777777765211 12456666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1457 YSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1457 ~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
+|.-.-+.|+ .++++..|+++.+.+|.
T Consensus 49 lg~~~~~~g~--y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 49 IANDHFISFR--FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 6766655554 55666666666665554
No 298
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=35.19 E-value=9.8 Score=38.86 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc
Q 000149 195 IEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV 274 (2037)
Q Consensus 195 ~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~ 274 (2037)
+..+|.|++..||.++...+..+- + .. +..+..++. -+|+.|+...+.++|.++...
T Consensus 17 l~~~L~~~~~~vR~~A~~~L~~~~------------~--~~------~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~~-- 73 (131)
T 1te4_A 17 RGSHMADENKWVRRDVSTALSRMG------------D--EA------FEPLLESLS-NEDWRIRGAAAWIIGNFQDER-- 73 (131)
T ss_dssp ----CCSSCCCSSSSCCSSTTSCS------------S--TT------HHHHHHGGG-CSCHHHHHHHHHHHGGGCSHH--
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhC------------c--hH------HHHHHHHHc-CCCHHHHHHHHHHHHhcCCHH--
Confidence 344569999999999876665411 1 11 245556565 478999999999999974322
Q ss_pred cchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 275 HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 275 ~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
++-.|++.|..+++.||..|..-+-++
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455677777899999999998887776
No 299
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=34.30 E-value=2e+02 Score=39.69 Aligned_cols=212 Identities=12% Similarity=0.218 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCC--CchhHHhhhHHHHHHHHhcccc--HHHHHHHHH-HHHhhcCCChHHHHHhhhHHHHHHHHHhhc
Q 000149 383 AVNIINELAKCLNT--DMVPLIVTWIPKVLAFALHQAD--ERRLLSALE-FYCIQTGSDNQEIFAAALPALLDELICFVD 457 (2037)
Q Consensus 383 ~~~~i~~ia~~~~~--~~~~l~~~~~~~Ila~ll~~~~--~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~ell~~~~ 457 (2037)
|...+..||+..+. ...|.+..-+|.+|..+--... ++-...++. ++... ++.. +...+|.++.-| .
T Consensus 72 a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~---~~~a-~~~~~~~~~~~~----~ 143 (986)
T 2iw3_A 72 AMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV---NPVA-IKALLPHLTNAI----V 143 (986)
T ss_dssp HHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS---CGGG-HHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC---CHHH-HHHHHHHHHHHh----c
Confidence 34556666644433 4567777777777665443221 222222332 22221 2222 255566666533 2
Q ss_pred CCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-cccc
Q 000149 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTT 536 (2037)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~ 536 (2037)
.+..=..+ .-+++-+.++... .++.+...+-.|+-.+.+.|.+.+ .+.|+.+..+|..+..+++. -|.+
T Consensus 144 ~~~kw~~k------~~~l~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~d~~~ 213 (986)
T 2iw3_A 144 ETNKWQEK------IAILAAFSAMVDA---AKDQVALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNKDIER 213 (986)
T ss_dssp HCCCHHHH------HHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred cccchHHH------HHHHHHHHHHHHH---hHHHHHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCcchhh
Confidence 22111111 1233333332211 156666777778888887776543 56788888888888888887 7999
Q ss_pred chHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc-cCCCCchhhHHHHHHHHHHHH-
Q 000149 537 YVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE-RDKDNPSVLLNKVVKILEDLV- 614 (2037)
Q Consensus 537 ~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~-~~~~~~~~~~~~~~~il~~Li- 614 (2037)
+.|.++.|+..-= ++ -..|+.|..+ .=+..+-+-+.+.++|++. ...+.++..+.++.-|++.+-
T Consensus 214 ~~~~~~~~~~~p~---~~--------~~~~~~l~~~--tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 214 FIPSLIQCIADPT---EV--------PETVHLLGAT--TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp GHHHHHHHHHCTT---HH--------HHHHHHHTTC--CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhcChh---hh--------HHHHHHhhcC--eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 9999888876441 11 1236666432 1122222445556677774 234555566777777777653
Q ss_pred -HHhHHHHHhhc
Q 000149 615 -LKNRAILKQHI 625 (2037)
Q Consensus 615 -~~n~~~L~~~i 625 (2037)
+++......|+
T Consensus 281 lv~~~~~~~~f~ 292 (986)
T 2iw3_A 281 LVEDPQVIAPFL 292 (986)
T ss_dssp TCCCHHHHHHHH
T ss_pred hcCCHHHHhhhh
Confidence 24455555333
No 300
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=33.83 E-value=7.9e+02 Score=30.62 Aligned_cols=138 Identities=8% Similarity=0.057 Sum_probs=76.8
Q ss_pred cchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHH
Q 000149 162 EEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2037)
.+++--...+|..+..+.... ..+.....-+..|-.+|.+++..||..++.++..+- .+ .+..++..
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs----------~~--~~~~~k~~ 281 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS----------WR--ADVNSKKT 281 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT----------SS--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh----------cC--CCHHHHHH
Confidence 445555666666666554322 111111112334445567888899999988887742 11 11122222
Q ss_pred -----HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh-cccchhH--HHHHHHHHHHhCCCCcc----hHHHHHHHHHHH
Q 000149 241 -----LLDVIKLAFTAADDPLILETLLESTAELMMAV-DVHSQHF--LFLLILLVEQLDNPHVT----VRMNASRLIRKS 308 (2037)
Q Consensus 241 -----~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-~~~~e~~--~~~l~~Li~~L~~~n~~----~~~~a~~~i~~l 308 (2037)
.+..+-+.+....++.+++..+-+++.|.... +.+.++. .-++-.|++-|.+++.. +...|.--|.++
T Consensus 282 I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nL 361 (458)
T 3nmz_A 282 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361 (458)
T ss_dssp HHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Confidence 34455555555668889998887777773311 1222221 12455677777766543 677777778888
Q ss_pred Hhh
Q 000149 309 CFF 311 (2037)
Q Consensus 309 a~~ 311 (2037)
|.+
T Consensus 362 s~~ 364 (458)
T 3nmz_A 362 SSL 364 (458)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 301
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=33.51 E-value=70 Score=39.78 Aligned_cols=89 Identities=7% Similarity=-0.017 Sum_probs=48.3
Q ss_pred HHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----h-ccC---------
Q 000149 1050 SFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----H-KSL--------- 1115 (2037)
Q Consensus 1050 A~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r-~~~--------- 1115 (2037)
+.+-+.|..|+-+.|...........+. ....-..+..|..+|...++.|.+...... + +..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~----h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDI----NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTT----SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCcc----chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4455789999999988765433222110 011123456677777666666665554321 1 111
Q ss_pred ChhHHHHHHHhhcCHHHHHHHHHHHHc
Q 000149 1116 SLQDELLSNKKSGNWAEVFTSCEQALQ 1142 (2037)
Q Consensus 1116 ~l~~qil~~E~~G~W~~A~~~YE~~Lq 1142 (2037)
++..-...|...|+|++|...|+++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122334456666777777777766654
No 302
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=32.42 E-value=2.7e+02 Score=35.75 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc--ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC-ChhhHHHHh
Q 000149 1130 WAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC--HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG-RWDLMDEYL 1206 (2037)
Q Consensus 1130 W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg--q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg-~Wd~lee~l 1206 (2037)
+++|+.+|+.+++..|.+...-.+.--++.++| .|+.-+..++.+....|.....|..-+ -+.=++| .|+.--+|.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~-~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR-FVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHH-HHHHHcCCChHHHHHHH
Confidence 889999999999999988776555555677888 678777777777665555444444322 1222456 565544444
Q ss_pred hc
Q 000149 1207 SG 1208 (2037)
Q Consensus 1207 ~~ 1208 (2037)
..
T Consensus 168 ~~ 169 (567)
T 1dce_A 168 DS 169 (567)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 303
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=31.84 E-value=93 Score=38.77 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=62.4
Q ss_pred hhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhh-----cC--CChH---HHHHHHHHHHcCCch
Q 000149 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA-----SG--APNV---HMEKAKLLWSTRRSD 1398 (2037)
Q Consensus 1329 e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~-----~~--~p~~---~iE~AKLLW~~g~~~ 1398 (2037)
+..|.++..+|++.+ ..++.+.-..|.+.+..|+++.|.....++.. +| .|+. ...-|+++|.+|+.+
T Consensus 322 ~~~L~i~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~ 399 (433)
T 3qww_A 322 ELSQEKMSSVFEDSN--VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA 399 (433)
T ss_dssp HHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCccChhc--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHH
Confidence 456677777777764 36778889999999999999999888777643 33 4443 445688999999999
Q ss_pred HHHHHHHHHhhc
Q 000149 1399 GAIAELQQNLLN 1410 (2037)
Q Consensus 1399 ~Ai~~L~~~i~~ 1410 (2037)
+|...++++++-
T Consensus 400 eA~~~~~~Al~i 411 (433)
T 3qww_A 400 AGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 304
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=31.35 E-value=3.9e+02 Score=32.10 Aligned_cols=93 Identities=18% Similarity=0.373 Sum_probs=62.2
Q ss_pred hHHHHHHhhhcCC-CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH------Hhccccccch-HHHHH
Q 000149 472 PRVIRKVSTVLTG-NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE------MIGSHLTTYV-PKILV 543 (2037)
Q Consensus 472 ~~~~~~~~~~~~~-~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~------l~g~~v~~~~-pqI~a 543 (2037)
.+|+...-..++. ...++.||..++=-....++. ++.++.--.|+++|+=||+|+- +|-.+|+... =|+|-
T Consensus 182 sDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~-Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M 260 (341)
T 1upk_A 182 SDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEK-LLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMM 260 (341)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHH
Confidence 3555555445544 356889999999888888885 8888778889999999999864 3444554432 23322
Q ss_pred HHHHHhc--CCCcchhhhHHHHHHHHH
Q 000149 544 LLMHAIN--KESLQCEGLSVLHFFIEQ 568 (2037)
Q Consensus 544 ~L~saL~--~~~L~~~~l~~W~~fv~~ 568 (2037)
..|. .+..+..||.+..+||.+
T Consensus 261 ---~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 261 ---NLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp ---HHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred ---HHhcCchhchhhhhhhheeeeeeC
Confidence 2232 345677777777777775
No 305
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=30.62 E-value=2.1e+02 Score=30.16 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=48.9
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++.. ....++.++.+.+|++|.|+.|.++||.=|..+.+.....+|.-+.+.
T Consensus 17 ~dw~~~leicD~I~~~--~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~ 80 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTD--PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF 80 (148)
T ss_dssp CCHHHHHHHHHHHHHS--SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHcC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 4554444555555543 245789999999999999999999999999999988877777766543
No 306
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=29.84 E-value=5.1e+02 Score=33.49 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=85.5
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCc---hh--hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTR---DV--LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~---~~--~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2037)
+.+.++|-.....+++-++..+|+.+...... .. .+. ...-+.+|-.||.+++..|+.++|..++.+-.++-
T Consensus 311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-- 387 (584)
T 3l6x_A 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-- 387 (584)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--
Confidence 35677776667788998999999988764321 11 111 12335678888899999999999999999642211
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcC-------ChhHHHHHHHHHHHHHhhhcccchhH-HH-HHHHHHHHhCCC--
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAAD-------DPLILETLLESTAELMMAVDVHSQHF-LF-LLILLVEQLDNP-- 293 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~i~eTll~~~~~i~~~~~~~~e~~-~~-~l~~Li~~L~~~-- 293 (2037)
.-.......+-.+-+.|...+ ..++++..+-+++.|+.+.+.+...+ .. ++=.|+.-|.+.
T Consensus 388 --------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 388 --------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp --------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred --------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence 111112445666666666553 34567777777777643222122211 11 222344444443
Q ss_pred CcchHHHHHHHHHHHH
Q 000149 294 HVTVRMNASRLIRKSC 309 (2037)
Q Consensus 294 n~~~~~~a~~~i~~la 309 (2037)
++.+.-.|..-+.+++
T Consensus 460 ~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 460 SEKEVRAAALVLQTIW 475 (584)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 4555555555555554
No 307
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=29.83 E-value=2.5e+02 Score=35.29 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcC-CchHHHHHHHHHhhc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTR-RSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~~ 1410 (2037)
....|+.+++..|++|..+.|...+.+| ... .....+..|.+-|..| +.+.|-...+.+++.
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 4568999999999999999998888888 332 2256778899998776 589999999998864
No 308
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=29.25 E-value=9.6e+02 Score=30.23 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhhcc---cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh--
Q 000149 144 DFSFLLNIYFEFLYD---ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL-- 218 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~---~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~-- 218 (2037)
+|+.++.--++-++| ..+..||+..++.|+.++++ +.+ .....-|--||...+..-+.+.-.++-.++
T Consensus 58 ~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-----~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 58 HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-----PRVADILTQLLQTDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-----hhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Q ss_pred -hhhhhhhhccccccccchhhHHHHHHHH-HHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcc
Q 000149 219 -QDTVLSSLFLDENASSRSNELKLLDVIK-LAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVT 296 (2037)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~ 296 (2037)
-+..|..+|+.-..++-.-++.++..|. +...-..+..-.|+=-.-+.+|.+.. ..+..-=+.++++-|++....
T Consensus 131 Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L---~DVT~~EF~L~m~lL~~lkl~ 207 (507)
T 3u0r_A 131 DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVL---EDVTGEEFVLFMKILSGLKSL 207 (507)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHT---TSCCHHHHHHHHHHHHTSGGG
T ss_pred ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhcccc
Q ss_pred hHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhc
Q 000149 297 VRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS 376 (2037)
Q Consensus 297 ~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~ 376 (2037)
=...-..|++.++.-+..-.-.+-.+-..++ +++-..+-.-++--- =|++...|+.-+..++|| ++.
T Consensus 208 ~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~v-dRlI~C~~~ALP~FS----------~~v~StkFv~y~~~kIlP--~l~ 274 (507)
T 3u0r_A 208 QTVSGRQQLVELVAEQADLEQTFNPSDPDCV-DRLLQCTRQAVPLFS----------KNVHSTRFVTYFCEQVLP--NLG 274 (507)
T ss_dssp SSHHHHHHHHHHHHHHHTTTSCCCSSCHHHH-HHHHHHHHHHGGGCB----------TTBCCHHHHHHHHHHTGG--GTT
T ss_pred cCchHHHHHHHHHHHHHhccCCCCCcCHHHH-HHHHHHHHHHHHHhc----------cCCChHHHHHHHHHhhcc--chh
Q ss_pred cccCh-----hHHHHHHHHHHHcCCCc-hhHHhhhHHHHHHHHh
Q 000149 377 QQDND-----QAVNIINELAKCLNTDM-VPLIVTWIPKVLAFAL 414 (2037)
Q Consensus 377 ~~~~~-----~~~~~i~~ia~~~~~~~-~~l~~~~~~~Ila~ll 414 (2037)
.=... .-..+|+.+|....-.- .+--...++.|+-+|+
T Consensus 275 ~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 275 TLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp CCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
No 309
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=28.30 E-value=2.8e+02 Score=33.54 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHH
Q 000149 204 KAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLL 283 (2037)
Q Consensus 204 r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l 283 (2037)
|..|.+.-+.+...+ .|.+-+....-..|++-++ +-+.+|..++--+...+-.+ .....|.+ ++.
T Consensus 42 ~kc~~~l~kll~l~~---------~G~~f~~~e~t~lf~~v~k--l~~s~d~~lKrLvYLyl~~~---~~~~~e~i-Lv~ 106 (355)
T 3tjz_B 42 RKCAHILTKILYLIN---------QGEHLGTTEATEAFFAMTK--LFQSNDPTLRRMCYLTIKEM---SCIAEDVI-IVT 106 (355)
T ss_dssp HHHHHHHHHHHHHHH---------HTCCCCHHHHHHHHHHHHG--GGGCCCHHHHHHHHHHHHHH---TTTSSCGG-GGH
T ss_pred HHHHHHHHHHHHHHH---------CCCCCchhHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHh---CCCHHHHH-HHH
Q ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHH
Q 000149 284 ILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFA 350 (2037)
Q Consensus 284 ~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~ 350 (2037)
=.|..-+.++|+++||.|.+-+.++ ..+.+. +.+.+++.+.|..+---++.-|
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I-----------~~~~m~---~~l~~~lk~~L~d~~pyVRk~A 159 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQI-----------TDSTML---QAIERYMKQAIVDKVPSVSSSA 159 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----------CCTTTH---HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcC-----------CCHHHH---HHHHHHHHHHcCCCCHHHHHHH
No 310
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=27.99 E-value=4.3e+02 Score=33.84 Aligned_cols=133 Identities=5% Similarity=-0.073 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCc--hHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccc
Q 000149 1365 YETATRAILEAQASGAPN--VHMEKAKLLWSTRRS--DGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSN 1440 (2037)
Q Consensus 1365 ~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~--~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 1440 (2037)
++.|.....+|...++.+ +---++-++-..|.. .+|+...+++++..+.
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--------------------------- 141 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--------------------------- 141 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc---------------------------
Confidence 677777777776665444 333455566666744 8999999888763211
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhh
Q 000149 1441 TQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKR 1520 (2037)
Q Consensus 1441 ~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~ 1520 (2037)
+ ..|+.-.+--+...+ ...++.++.|.++++.+|....+|++.|.-+.++... .+ ....+...
T Consensus 142 ------N---~~aW~~R~~~l~~l~-~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~----~~-~~~~~~~~-- 204 (567)
T 1dce_A 142 ------N---FHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ----PD-SGPQGRLP-- 204 (567)
T ss_dssp ------C---HHHHHHHHHHHHHTC-CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC----CC-SSSCCSSC--
T ss_pred ------c---ccHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc----cc-cccccccc--
Confidence 0 122332222223333 2467888999999999999999999998877655310 00 00001000
Q ss_pred hhchHHHHHHHHHHHhccCCcc
Q 000149 1521 WWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1521 ~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
......++..|-+++...+++
T Consensus 205 -~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 205 -ENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHCSSC
T ss_pred -HHHHHHHHHHHHHHHhhCCCC
Confidence 123457889999999877664
No 311
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.87 E-value=3.6e+02 Score=28.62 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=48.0
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccC-CChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNH-ENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~-en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++.. ....++.++.+.+|++| .|+.|.++||.=|..+.+.....++..+.+.
T Consensus 32 ~Dw~~~leicD~I~~~--~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 32 EDWALNMEICDIINET--EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp CCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHhCC--CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 5555555666666643 34678999999999985 7899999999999988888877777655543
No 312
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.78 E-value=3.6e+02 Score=28.04 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=51.1
Q ss_pred cccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 625 IHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 625 i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
-.+...-|+....-++-..++. ++...++..+.+.+|++|.|+.|.++||.=|..+.+.....+|..+.+.
T Consensus 14 T~~~l~~~dw~~ileicD~I~~--~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~ 84 (140)
T 3ldz_A 14 TSEMNTAEDWGLILDICDKVGQ--SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR 84 (140)
T ss_dssp TCTTSSSCCHHHHHHHHHHHTT--STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred cCCCCCCcCHHHHHHHHHHHHC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 3333334555555555555553 2346789999999999999999999999988888888777777666544
No 313
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.14 E-value=2.8e+02 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++. +....++.++.+.+|++|.|+.|.++||.=|..+.+.....++..+.+.
T Consensus 21 ~dw~~~leicd~i~~--~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~ 84 (220)
T 1dvp_A 21 PDWPSILLICDEINQ--KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK 84 (220)
T ss_dssp CCHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH
T ss_pred cCHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH
Confidence 565555566666653 3347899999999999999999999999999999998877777655543
No 314
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=25.71 E-value=65 Score=37.49 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=38.8
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1894 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIV----GLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1894 vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYIL----gLGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
.|.+|+.+..+.+..-......++++++ +.+.|+= -=+|-+|+|||++ .+|.+.=+|||..-.
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~i~~qi~--~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~ 213 (332)
T 3qd2_B 147 NLKDWMNRRCSLEDREHGVCLHIFIQIA--EAVEFLHSKGLMHRDLKPSNIFFT-MDDVVKVGDFGLVTA 213 (332)
T ss_dssp CHHHHHHTCCSGGGSCHHHHHHHHHHHH--HHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred CHHHHHhcccCccchhhHHHHHHHHHHH--HHHHHHHhCCeeecCCCcccEEEe-CCCCEEEeecCcccc
Confidence 6777777655433221122233443332 2333432 2379999999999 689999999998643
No 315
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=24.39 E-value=2.8e+02 Score=33.85 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2037)
Q Consensus 1381 p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akw 1460 (2037)
|.+.--.|-.+|.+|+.++|+..+++++.-++ . +-++.++|+-
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------------------------------------s-~~a~~llG~~ 319 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEM------------------------------------S-WLNYVLLGKV 319 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------------------------------------C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------------------------------------C-HHHHHHHHHH
Confidence 33444455678889999999999999976210 0 3356777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1461 IHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1461 l~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
....|+ .++++..|.+|+.++|.-+
T Consensus 320 ~~~~G~--~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 320 YEMKGM--NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred HHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence 777776 8999999999999999653
No 316
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=24.07 E-value=5.6e+02 Score=30.74 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=81.8
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCc---hhhhhhhhHHHH-HHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTR---DVLLKTRSEWIK-CIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~---~~~~~~~~~w~~-~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2037)
+.+.++|. ..+++|+...+.+|+.+-.+... +...+. .-+. -++.|+.+++..+++.+.+++..+-.
T Consensus 130 p~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~------ 200 (354)
T 3nmw_A 130 RALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSA------ 200 (354)
T ss_dssp HHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc------
Confidence 33555554 45678888888888888665221 222211 1122 33334566778888888887776431
Q ss_pred hccccccccchh---hHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHHHh---hhcccchhHH--HHHHHHHHHhCCCC
Q 000149 226 LFLDENASSRSN---ELKLLDVIKLAFTAADDP---LILETLLESTAELMM---AVDVHSQHFL--FLLILLVEQLDNPH 294 (2037)
Q Consensus 226 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~---~i~eTll~~~~~i~~---~~~~~~e~~~--~~l~~Li~~L~~~n 294 (2037)
+.+ ..+.. ..-.+..+-+.+...++. .+++-..-++.-|.. +.+.+.+.+. -++-.|++.|.+++
T Consensus 201 ---~~~-~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~ 276 (354)
T 3nmw_A 201 ---HCT-ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276 (354)
T ss_dssp ---TCH-HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC
T ss_pred ---cCh-hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 000 00110 112344444545444443 477766555555532 1111111111 13556889999999
Q ss_pred cchHHHHHHHHHHHHh
Q 000149 295 VTVRMNASRLIRKSCF 310 (2037)
Q Consensus 295 ~~~~~~a~~~i~~la~ 310 (2037)
..++-.|..-|.++|.
T Consensus 277 ~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSA 292 (354)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999964
No 317
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=24.04 E-value=2.6e+02 Score=38.33 Aligned_cols=158 Identities=10% Similarity=0.113 Sum_probs=96.6
Q ss_pred hhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccccccccccccccc
Q 000149 17 FDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDD 96 (2037)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (2037)
++.||.-|++|+-++.+-||- ..+...|..+..+....++..-+.+||.+-| |+|
T Consensus 450 ~~~ir~gAaLGLGla~~GS~~---eev~e~L~~~L~dd~~~~~~~AalALGli~v--GTg-------------------- 504 (963)
T 4ady_A 450 VDVLLHGASLGIGLAAMGSAN---IEVYEALKEVLYNDSATSGEAAALGMGLCML--GTG-------------------- 504 (963)
T ss_dssp HHHHHHHHHHHHHHHSTTCCC---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCC--------------------
T ss_pred cHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--ccC--------------------
Confidence 478999999999998777763 2455555555555555677788888887665 444
Q ss_pred cccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHHHHHHH
Q 000149 97 ILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRIL 176 (2037)
Q Consensus 97 ~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il 176 (2037)
|... ++. +...+.+...+.|+-+++..|.-+.
T Consensus 505 ------------------n~~a-----------------------------i~~-LL~~~~e~~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 505 ------------------KPEA-----------------------------IHD-MFTYSQETQHGNITRGLAVGLALIN 536 (963)
T ss_dssp ------------------CHHH-----------------------------HHH-HHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ------------------CHHH-----------------------------HHH-HHHHHhccCcHHHHHHHHHHHHhhh
Confidence 1111 222 2222334456778877777777664
Q ss_pred ccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChh
Q 000149 177 VHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPL 256 (2037)
Q Consensus 177 ~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 256 (2037)
-. ..+ - .-..++.|..+.+..+|.+++.++.+ -|.|+ ++ ...+.++-+.+..-.+..
T Consensus 537 ~g-~~e-~------~~~li~~L~~~~dp~vRygaa~algl---------AyaGT--Gn----~~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 537 YG-RQE-L------ADDLITKMLASDESLLRYGGAFTIAL---------AYAGT--GN----NSAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp TT-CGG-G------GHHHHHHHHHCSCHHHHHHHHHHHHH---------HTTTS--CC----HHHHHHHHHHHHHCSCHH
T ss_pred CC-ChH-H------HHHHHHHHHhCCCHHHHHHHHHHHHH---------HhcCC--CC----HHHHHHHHHHhccCCcHH
Confidence 33 222 1 11245557788999999999887765 23333 11 233333334344444556
Q ss_pred HHHHHHHHHHHHHh
Q 000149 257 ILETLLESTAELMM 270 (2037)
Q Consensus 257 i~eTll~~~~~i~~ 270 (2037)
|+...++++|.|+.
T Consensus 594 VRraAViaLGlI~~ 607 (963)
T 4ady_A 594 VRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999843
No 318
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=23.84 E-value=1e+03 Score=28.61 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-cc------ccccchHHHHHHHHHHhcCCCcchhhhHHH
Q 000149 490 GFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI-GS------HLTTYVPKILVLLMHAINKESLQCEGLSVL 562 (2037)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~-g~------~v~~~~pqI~a~L~saL~~~~L~~~~l~~W 562 (2037)
.+.+..+|-.+-.- ++.=+++.||.+-.-+..+++-- |+ ++.. .|.|+.+|..+-+.++ .|+.|=
T Consensus 73 ei~~~dll~~Li~~----l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~d---iAl~~G 144 (341)
T 1upk_A 73 ELYNSGLLSTLVAD----LQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPE---IALNCG 144 (341)
T ss_dssp HHHHHSHHHHHHHT----GGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTT---THHHHH
T ss_pred HHHHhCHHHHHHHh----cccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccch---hHhHHH
Confidence 55666666544321 12235777777666666666532 22 3333 6999999999998876 444444
Q ss_pred HHHHHHhccCCCcchhh-HH-HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHH
Q 000149 563 HFFIEQLSRVSPSSTKH-VI-SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEV 640 (2037)
Q Consensus 563 ~~fv~~L~~~~~~~l~~-ll-~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v 640 (2037)
..+-.++.. +.+.. +| +..|..+..|++. +.+ .+...|...|+.|+..|+..+.+|+..
T Consensus 145 ~mLRecir~---e~la~~iL~~~~f~~fF~yv~~-~~F--diasDAf~TfkelLt~Hk~lvaefL~~------------- 205 (341)
T 1upk_A 145 IMLRECIRH---EPLAKIILWSEQFYDFFRYVEM-STF--DIASDAFATFKDLLTRHKLLSAEFLEQ------------- 205 (341)
T ss_dssp HHHHHHHTS---HHHHHHHHHSGGGGHHHHHTTC-SSH--HHHHHHHHHHHHHHHSSHHHHHHHHHH-------------
T ss_pred HHHHHHHHh---HHHHHHHhccHHHHHHHHHhcC-CCc--hHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 443334322 23322 12 2333344444431 111 245678888888988888887666532
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhh--cHHHHHHHH
Q 000149 641 NKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKL--KSEDVTALI 694 (2037)
Q Consensus 641 ~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~--~~~~l~~~~ 694 (2037)
....-+..+.+-++++|=-.+.|+|+=|.++|-. |..-+...+
T Consensus 206 -----------nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yi 250 (341)
T 1upk_A 206 -----------HYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYI 250 (341)
T ss_dssp -----------THHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHT
T ss_pred -----------hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHh
Confidence 1123455666777888866699999999999987 444444444
No 319
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=23.39 E-value=2.6e+02 Score=35.10 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHHH-HHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 241 LLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 241 ~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~~-~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
.+..+-+.+. ..+..+++-..-+++.+......+.+ +.-. ++=.|++-|.+.+.-++-.|..-|.+|+.++
T Consensus 380 ~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3445555444 35566899888888888522222222 2222 2344888888999999999999999998764
No 320
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=22.71 E-value=9.6e+02 Score=28.00 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHhhcCHH--HHHHHHHHHHccCCCchhhhhhHHHHHHhccC------hHHHHHHhhhhhccchhhhhhHhHHHHHHH
Q 000149 1122 LSNKKSGNWA--EVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH------LQAMVTHVDGLISRIPQYKKTWCMQGVQAA 1193 (2037)
Q Consensus 1122 l~~E~~G~W~--~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq------~~~ll~~~~gl~~~~p~~~~~l~~~~~EAA 1193 (2037)
...++.|+|+ +++++++++++.+|.|...-...-.++..+|. ++.-+.+++......|...+-|.-.+. ..
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~-ll 230 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG-IH 230 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH-HH
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH-HH
Confidence 3446788888 99999999999888887654344445666776 777777777766666766665643332 11
Q ss_pred HhcCC-hhhHHHHhhc
Q 000149 1194 WRLGR-WDLMDEYLSG 1208 (2037)
Q Consensus 1194 Wrlg~-Wd~lee~l~~ 1208 (2037)
-++|+ .+.+.++...
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHTTCCGGGGHHHHHT
T ss_pred HhcCCChHHHHHHHHH
Confidence 23444 3445555554
No 321
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=21.92 E-value=38 Score=38.81 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.6
Q ss_pred cCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
=||=+|+|||++. ++.=||||..-.
T Consensus 194 HrDlkp~NILl~~---~~~liDFG~a~~ 218 (258)
T 1zth_A 194 HADLSEYNIMYID---KVYFIDMGQAVT 218 (258)
T ss_dssp CSSCSTTSEEESS---SEEECCCTTCEE
T ss_pred eCCCCHHHEEEcC---cEEEEECccccc
Confidence 3899999999985 899999998754
No 322
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=21.49 E-value=41 Score=39.18 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.1
Q ss_pred cCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
=+|=+|+|||++ +|.+.=+|||.+-.
T Consensus 216 HrDlkp~NILl~--~~~vkl~DFG~a~~ 241 (282)
T 1zar_A 216 HGDLSQYNVLVS--EEGIWIIDFPQSVE 241 (282)
T ss_dssp CSCCSTTSEEEE--TTEEEECCCTTCEE
T ss_pred eCCCCHHHEEEE--CCcEEEEECCCCeE
Confidence 479999999999 99999999998753
No 323
>2ijr_A Hypothetical protein API92; structural genomics, PSI, protein structure initiative; 2.70A {Yersinia pseudotuberculosis} SCOP: e.66.1.1
Probab=21.27 E-value=44 Score=38.66 Aligned_cols=26 Identities=12% Similarity=0.326 Sum_probs=23.0
Q ss_pred hhHHHHHhhchhHHHHhccccccccc
Q 000149 843 RGRKFWDRFSIYVKEIIAPCLTSRFQ 868 (2037)
Q Consensus 843 ~~~~~W~~~p~~~~~~l~P~LtSrY~ 868 (2037)
-+.++|+.+|+.+|++|+++++-+|.
T Consensus 111 i~~~kWe~lp~~ar~~i~~L~~~~y~ 136 (300)
T 2ijr_A 111 IASVKWETIPEGARQIITQLMARQYP 136 (300)
T ss_dssp GGGCCTTSSCSHHHHHHHHHHHHTHH
T ss_pred ccccccccCCHHHHHHHHHHHhhhhc
Confidence 35667999999999999999998886
No 324
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.91 E-value=3.7e+02 Score=30.32 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=49.6
Q ss_pred CCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhcc
Q 000149 632 PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGE 697 (2037)
Q Consensus 632 p~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e 697 (2037)
|+....-++-..++. +....++.++.+.+|++|.|+.|.++||.=|..+.+.....++.-+.+.
T Consensus 24 ~dw~~ileicD~I~~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 24 TDWESILQICDLIRQ--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp CCHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred cCHHHHHHHHHHHhC--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 555555556666653 3456899999999999999999999999988888887777777766554
No 325
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=20.87 E-value=1.7e+02 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=23.2
Q ss_pred cCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1932 LGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1932 LGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
=||-+|+||+++ .+|.+.=+|||..-
T Consensus 147 H~dikp~Nili~-~~~~~kl~Dfg~~~ 172 (298)
T 3pls_A 147 HRDLAARNCMLD-ESFTVKVADFGLAR 172 (298)
T ss_dssp CSCCSGGGEEEC-TTCCEEECCTTSSC
T ss_pred cCCCCcceEEEc-CCCcEEeCcCCCcc
Confidence 489999999998 68999999999874
No 326
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.87 E-value=2.6e+02 Score=26.59 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHH-HcCC--hHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000149 1348 VGNCWLQYAKLCR-LAGH--YETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2037)
Q Consensus 1348 ~~~~WL~~AklAR-Kag~--~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2037)
..+.|..+|..-- .+|. .+.|...+.+|.+.. .+.+.+-.+......|+..+|+...+..+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3566777777763 3333 789999999998775 45678888999999999999999999988743
No 327
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=20.64 E-value=1.2e+02 Score=34.65 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.6
Q ss_pred ccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1931 GLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1931 gLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
--||-+|+||+++..+|.+.=+|||..-
T Consensus 144 ~H~dl~p~Nil~~~~~~~~kl~Dfg~~~ 171 (295)
T 2clq_A 144 VHRDIKGDNVLINTYSGVLKISDFGTSK 171 (295)
T ss_dssp ECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred EccCCChhhEEEECCCCCEEEeeccccc
Confidence 3589999999999779999999999774
No 328
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=20.60 E-value=7.7e+02 Score=32.05 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
..+.|+++.|..||.++- ...++...+..+|..+.+...++.... ......+..+++.+|+++...
T Consensus 691 al~~~~~~~A~~~y~~~~--------d~~~l~~l~~~~~~~~~~~~~~~~a~~------~~~~~~A~~~~~~~g~~~~a~ 756 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAH--------DLESLFLLHSSFNNKEGLVTLAKDAET------TGKFNLAFNAYWIAGDIQGAK 756 (814)
T ss_dssp HHHTTCHHHHHHHHHHHT--------CHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHcc--------ChhhhHHHHHHcCCHHHHHHHHHHHHH------cCchHHHHHHHHHcCCHHHHH
Confidence 456778888888887531 112444555556666655444332211 112345777899999999988
Q ss_pred HHhhccc
Q 000149 1204 EYLSGAD 1210 (2037)
Q Consensus 1204 e~l~~~~ 1210 (2037)
+.+....
T Consensus 757 ~~~~~~~ 763 (814)
T 3mkq_A 757 DLLIKSQ 763 (814)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8766544
No 329
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=20.34 E-value=8.7e+02 Score=27.58 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=23.7
Q ss_pred ccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1931 GLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1931 gLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
--||-.|+||+++ .+|.+.=+|||..-
T Consensus 160 ~H~dikp~NIli~-~~~~~kl~Dfg~~~ 186 (322)
T 1p4o_A 160 VHRDLAARNCMVA-EDFTVKIGDFGMTR 186 (322)
T ss_dssp BCSCCSGGGEEEC-TTCCEEECCTTCCC
T ss_pred ccCCCccceEEEc-CCCeEEECcCcccc
Confidence 3589999999999 68999999999874
Done!