Query 000150
Match_columns 2031
No_of_seqs 335 out of 1196
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 20:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 99.8 4.4E-19 9.6E-24 219.4 7.8 108 1001-1117 222-329 (640)
2 cd05495 Bromo_cbp_like Bromodo 99.6 3.2E-15 7E-20 149.4 9.6 103 1000-1111 2-105 (108)
3 cd05496 Bromo_WDR9_II Bromodom 99.6 4.6E-15 1E-19 151.1 9.0 104 1002-1116 6-110 (119)
4 cd05506 Bromo_plant1 Bromodoma 99.6 5E-15 1.1E-19 144.4 7.6 99 1002-1109 1-99 (99)
5 cd05503 Bromo_BAZ2A_B_like Bro 99.5 1.3E-14 2.8E-19 142.2 8.0 96 1003-1109 2-97 (97)
6 cd05505 Bromo_WSTF_like Bromod 99.5 1.5E-14 3.3E-19 142.5 7.9 94 1003-1107 2-95 (97)
7 cd05497 Bromo_Brdt_I_like Brom 99.5 1.8E-14 3.8E-19 144.1 7.9 100 1003-1111 6-106 (107)
8 cd05498 Bromo_Brdt_II_like Bro 99.5 2.8E-14 6.1E-19 140.1 8.0 98 1003-1109 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.5 5.6E-14 1.2E-18 142.1 8.8 100 1002-1112 13-112 (115)
10 cd05500 Bromo_BDF1_2_I Bromodo 99.5 6.8E-14 1.5E-18 138.3 9.2 98 1002-1108 5-102 (103)
11 cd05502 Bromo_tif1_like Bromod 99.5 8E-14 1.7E-18 139.0 9.7 100 1002-1113 5-107 (109)
12 cd05501 Bromo_SP100C_like Brom 99.5 8.2E-14 1.8E-18 139.1 9.0 97 1003-1113 4-100 (102)
13 cd05499 Bromo_BDF1_2_II Bromod 99.5 6.8E-14 1.5E-18 137.8 8.2 98 1003-1109 2-102 (102)
14 cd05507 Bromo_brd8_like Bromod 99.5 1.3E-13 2.8E-18 137.0 8.6 98 1002-1110 4-101 (104)
15 cd05509 Bromo_gcn5_like Bromod 99.5 1.5E-13 3.2E-18 134.8 8.8 98 1003-1111 3-100 (101)
16 cd05516 Bromo_SNF2L2 Bromodoma 99.4 3.8E-13 8.2E-18 134.4 9.1 99 1002-1111 2-106 (107)
17 cd05510 Bromo_SPT7_like Bromod 99.4 5.1E-13 1.1E-17 134.9 8.0 101 1000-1111 6-108 (112)
18 cd05508 Bromo_RACK7 Bromodomai 99.4 8.8E-13 1.9E-17 130.7 8.5 94 1002-1107 4-97 (99)
19 cd05513 Bromo_brd7_like Bromod 99.4 9E-13 1.9E-17 130.5 7.5 91 1002-1103 2-92 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.3 2E-12 4.3E-17 130.6 7.6 100 1003-1113 5-108 (112)
21 cd05512 Bromo_brd1_like Bromod 99.3 2.9E-12 6.3E-17 126.6 7.3 89 1004-1103 4-92 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.3 7.5E-12 1.6E-16 126.2 8.8 97 1007-1114 6-102 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.3 8.6E-12 1.9E-16 123.5 8.5 96 1003-1109 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.3 1E-11 2.2E-16 123.8 8.8 97 1003-1110 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.3 1.5E-11 3.3E-16 124.2 9.3 100 1003-1113 4-109 (113)
26 PF05964 FYRN: F/Y-rich N-term 99.2 4.6E-12 1E-16 113.8 3.4 48 298-345 1-54 (54)
27 smart00297 BROMO bromo domain. 99.2 2.6E-11 5.6E-16 118.1 8.8 100 1001-1111 7-106 (107)
28 cd05529 Bromo_WDR9_I_like Brom 99.2 3.2E-11 6.9E-16 124.2 9.4 99 1000-1108 23-124 (128)
29 PF00439 Bromodomain: Bromodom 99.2 2.5E-11 5.4E-16 113.6 7.5 84 1006-1100 1-84 (84)
30 cd04369 Bromodomain Bromodomai 99.2 3.7E-11 8E-16 112.6 7.8 95 1003-1108 2-98 (99)
31 cd05525 Bromo_ASH1 Bromodomain 99.2 7.9E-11 1.7E-15 118.2 9.2 95 1002-1107 3-103 (106)
32 cd05518 Bromo_polybromo_IV Bro 99.1 9.2E-11 2E-15 117.1 8.2 93 1004-1107 3-101 (103)
33 cd05517 Bromo_polybromo_II Bro 99.1 1E-10 2.2E-15 116.6 8.4 99 1004-1107 3-101 (103)
34 cd05520 Bromo_polybromo_III Br 99.1 1.7E-10 3.6E-15 115.1 7.7 79 1018-1107 23-101 (103)
35 cd05492 Bromo_ZMYND11 Bromodom 99.0 6.9E-10 1.5E-14 112.4 7.1 85 1016-1106 16-100 (109)
36 cd05522 Bromo_Rsc1_2_II Bromod 99.0 1.9E-09 4.1E-14 107.7 8.8 94 1003-1107 6-102 (104)
37 cd05521 Bromo_Rsc1_2_I Bromodo 98.9 1.6E-09 3.4E-14 109.0 7.6 99 1002-1107 2-100 (106)
38 KOG1244 Predicted transcriptio 98.8 7.7E-10 1.7E-14 124.7 1.6 58 1147-1204 271-331 (336)
39 KOG1245 Chromatin remodeling c 98.8 6.2E-09 1.3E-13 138.3 5.9 93 1006-1110 1306-1398(1404)
40 KOG0825 PHD Zn-finger protein 98.6 1.4E-08 3E-13 125.3 1.8 50 1155-1204 216-266 (1134)
41 COG5076 Transcription factor i 98.4 3.4E-07 7.4E-12 108.3 7.2 108 1002-1120 143-256 (371)
42 PF00628 PHD: PHD-finger; Int 98.4 1.2E-07 2.5E-12 82.9 1.0 48 1156-1203 1-50 (51)
43 KOG1473 Nucleosome remodeling 98.3 4.5E-07 9.7E-12 115.9 5.3 130 1154-1294 344-492 (1414)
44 KOG4299 PHD Zn-finger protein 98.3 1.8E-07 3.9E-12 115.2 1.6 53 1154-1206 253-307 (613)
45 KOG1246 DNA-binding protein ju 98.3 1.4E-07 2.9E-12 122.5 0.5 164 1155-1325 156-331 (904)
46 smart00541 FYRN "FY-rich" doma 98.3 4.9E-07 1.1E-11 79.3 3.1 37 309-345 3-44 (44)
47 KOG1512 PHD Zn-finger protein 98.3 2.7E-07 5.8E-12 105.2 1.3 59 1144-1204 301-363 (381)
48 cd05526 Bromo_polybromo_VI Bro 98.1 8E-06 1.7E-10 83.7 8.7 104 1003-1113 5-108 (110)
49 smart00249 PHD PHD zinc finger 98.1 2.7E-06 5.9E-11 70.9 3.6 46 1156-1201 1-47 (47)
50 cd04718 BAH_plant_2 BAH, or Br 98.1 3.1E-06 6.7E-11 90.3 4.7 31 1178-1208 1-31 (148)
51 cd05494 Bromodomain_1 Bromodom 97.9 7E-06 1.5E-10 84.1 2.8 78 1003-1089 5-89 (114)
52 KOG1973 Chromatin remodeling p 97.8 1.1E-05 2.3E-10 93.1 2.5 47 1155-1205 220-269 (274)
53 KOG1245 Chromatin remodeling c 97.8 6.1E-06 1.3E-10 110.8 0.4 50 1155-1204 1109-1158(1404)
54 PF02791 DDT: DDT domain; Int 97.7 5.1E-05 1.1E-09 70.1 6.0 58 658-760 2-59 (61)
55 KOG4443 Putative transcription 97.7 1.7E-05 3.8E-10 98.5 2.2 51 1152-1202 63-116 (694)
56 smart00571 DDT domain in diffe 97.5 0.00017 3.8E-09 67.2 6.1 37 657-694 1-39 (63)
57 KOG1472 Histone acetyltransfer 97.5 5.7E-05 1.2E-09 95.9 3.6 87 1007-1104 612-698 (720)
58 KOG0383 Predicted helicase [Ge 97.3 8.5E-05 1.9E-09 94.4 1.6 49 1155-1206 48-96 (696)
59 KOG0957 PHD finger protein [Ge 97.2 0.00012 2.6E-09 88.7 0.8 48 1156-1203 546-597 (707)
60 cd05491 Bromo_TBP7_like Bromod 97.1 0.00037 8E-09 72.7 3.6 43 1048-1091 61-103 (119)
61 KOG0955 PHD finger protein BR1 96.8 0.00067 1.5E-08 89.5 2.9 50 1153-1204 218-269 (1051)
62 KOG0954 PHD finger protein [Ge 96.7 0.0013 2.9E-08 83.0 4.5 52 1153-1206 270-323 (893)
63 PF01429 MBD: Methyl-CpG bindi 96.7 0.00074 1.6E-08 65.1 1.7 41 159-199 12-58 (77)
64 PF05965 FYRC: F/Y rich C-term 96.7 0.0011 2.4E-08 64.6 2.6 74 459-591 11-84 (86)
65 smart00542 FYRC "FY-rich" doma 96.6 0.0029 6.2E-08 62.4 5.0 73 463-594 11-83 (86)
66 COG5034 TNG2 Chromatin remodel 96.5 0.00097 2.1E-08 76.5 1.6 44 1156-1203 223-269 (271)
67 KOG0955 PHD finger protein BR1 96.0 0.0076 1.6E-07 80.1 5.6 100 1003-1113 567-666 (1051)
68 KOG4323 Polycomb-like PHD Zn-f 95.9 0.003 6.6E-08 77.7 1.3 49 1156-1204 170-224 (464)
69 COG5141 PHD zinc finger-contai 95.8 0.004 8.7E-08 76.1 1.6 50 1153-1204 192-243 (669)
70 cd01396 MeCP2_MBD MeCP2, MBD1, 95.5 0.0052 1.1E-07 59.9 0.9 40 159-198 8-52 (77)
71 KOG1473 Nucleosome remodeling 95.4 0.058 1.2E-06 71.4 10.1 110 644-818 173-285 (1414)
72 KOG0956 PHD finger protein AF1 95.2 0.0078 1.7E-07 75.9 1.6 47 1156-1204 7-57 (900)
73 cd00122 MBD MeCP2, MBD1, MBD2, 95.1 0.008 1.7E-07 56.0 0.8 40 159-198 7-51 (62)
74 KOG1474 Transcription initiati 94.3 0.014 3E-07 74.8 0.5 85 1014-1107 5-89 (640)
75 KOG0008 Transcription initiati 94.0 0.049 1.1E-06 73.2 4.5 81 1009-1100 1390-1470(1563)
76 smart00391 MBD Methyl-CpG bind 93.9 0.021 4.6E-07 55.8 0.8 40 159-198 9-54 (77)
77 KOG0008 Transcription initiati 93.1 0.1 2.2E-06 70.4 5.2 94 1007-1111 1267-1361(1563)
78 PF13831 PHD_2: PHD-finger; PD 93.0 0.019 4.2E-07 49.1 -1.0 34 1167-1202 2-36 (36)
79 PF15612 WHIM1: WSTF, HB1, Itc 91.2 0.18 3.8E-06 45.0 2.8 44 1241-1284 5-48 (50)
80 KOG1472 Histone acetyltransfer 89.7 0.29 6.3E-06 63.7 4.1 76 1000-1093 292-367 (720)
81 KOG1827 Chromatin remodeling c 88.7 0.49 1.1E-05 60.9 5.0 71 1039-1110 86-156 (629)
82 cd01397 HAT_MBD Methyl-CpG bin 86.1 0.31 6.6E-06 48.0 0.9 38 159-196 7-49 (73)
83 PF15614 WHIM3: WSTF, HB1, Itc 84.2 1.2 2.5E-05 40.8 3.5 35 1608-1642 1-36 (46)
84 KOG1512 PHD Zn-finger protein 83.0 0.47 1E-05 56.0 0.8 95 1155-1260 259-363 (381)
85 KOG0386 Chromatin remodeling c 80.0 2.3 5.1E-05 57.1 5.5 99 1004-1113 1027-1131(1157)
86 KOG1828 IRF-2-binding protein 78.2 0.94 2E-05 55.6 1.1 100 1007-1117 25-124 (418)
87 KOG0957 PHD finger protein [Ge 77.0 1.6 3.5E-05 54.7 2.7 50 1155-1204 120-179 (707)
88 PF13901 DUF4206: Domain of un 76.4 2.4 5.2E-05 48.0 3.6 40 1156-1204 154-198 (202)
89 KOG4443 Putative transcription 74.6 1.3 2.7E-05 57.3 0.9 49 1154-1203 18-70 (694)
90 PF15446 zf-PHD-like: PHD/FYVE 71.6 2 4.3E-05 48.2 1.4 49 1156-1204 1-60 (175)
91 PF14446 Prok-RING_1: Prokaryo 66.0 3.4 7.3E-05 39.1 1.5 32 1155-1186 6-38 (54)
92 KOG1828 IRF-2-binding protein 57.0 7.4 0.00016 48.3 2.6 61 1041-1103 238-298 (418)
93 cd01395 HMT_MBD Methyl-CpG bin 53.1 4.6 9.9E-05 38.8 0.1 30 171-200 23-52 (60)
94 PF11793 FANCL_C: FANCL C-term 52.0 2 4.4E-05 41.5 -2.5 50 1155-1204 3-64 (70)
95 KOG4161 Methyl-CpG binding tra 51.9 16 0.00034 43.7 4.2 40 159-198 20-65 (272)
96 KOG0383 Predicted helicase [Ge 47.5 3.5 7.6E-05 54.2 -2.1 49 1153-1204 505-554 (696)
97 cd05493 Bromo_ALL-1 Bromodomai 43.7 25 0.00054 38.5 3.7 44 1051-1095 59-102 (131)
98 KOG4299 PHD Zn-finger protein 42.9 16 0.00034 47.7 2.4 47 1155-1204 48-95 (613)
99 PF15613 WHIM2: WSTF, HB1, Itc 33.2 40 0.00086 30.1 2.7 17 1544-1560 1-17 (38)
100 PF12861 zf-Apc11: Anaphase-pr 32.5 20 0.00043 36.8 0.9 46 1157-1204 35-80 (85)
101 KOG4628 Predicted E3 ubiquitin 31.9 36 0.00077 42.3 3.0 49 1155-1206 230-278 (348)
102 PF10367 Vps39_2: Vacuolar sor 31.9 1.2E+02 0.0026 30.1 6.1 31 1154-1185 78-108 (109)
103 PF04216 FdhE: Protein involve 29.6 27 0.00058 41.5 1.4 45 1148-1204 166-220 (290)
104 PF07227 DUF1423: Protein of u 29.6 45 0.00099 42.5 3.4 29 1156-1184 130-161 (446)
105 PF00301 Rubredoxin: Rubredoxi 28.3 31 0.00066 31.9 1.2 17 1187-1204 27-43 (47)
106 PF12171 zf-C2H2_jaz: Zinc-fin 27.5 25 0.00055 28.1 0.5 24 1731-1754 1-24 (27)
107 COG1773 Rubredoxin [Energy pro 27.3 40 0.00088 32.3 1.9 41 1155-1204 4-45 (55)
108 PF13639 zf-RING_2: Ring finge 26.3 5 0.00011 34.9 -3.9 42 1156-1202 2-44 (44)
109 PF04508 Pox_A_type_inc: Viral 25.7 72 0.0016 26.2 2.7 18 1523-1540 2-19 (23)
110 PRK03564 formate dehydrogenase 25.4 56 0.0012 40.1 3.1 42 1151-1204 184-235 (309)
111 TIGR01562 FdhE formate dehydro 24.8 60 0.0013 39.7 3.2 42 1151-1204 181-233 (305)
112 KOG1734 Predicted RING-contain 24.8 25 0.00054 42.3 0.1 59 1144-1204 214-279 (328)
113 PF12874 zf-met: Zinc-finger o 23.5 16 0.00034 28.2 -1.2 22 1733-1754 2-23 (25)
114 PF13832 zf-HC5HC2H_2: PHD-zin 23.2 44 0.00096 34.0 1.5 29 1155-1185 56-86 (110)
115 KOG1632 Uncharacterized PHD Zn 21.4 50 0.0011 40.9 1.6 45 1160-1204 65-113 (345)
116 cd00730 rubredoxin Rubredoxin; 20.6 63 0.0014 30.3 1.7 17 1187-1204 27-43 (50)
117 KOG2756 Predicted Mg2+-depende 20.0 25 0.00055 42.4 -1.1 39 541-581 206-244 (349)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.76 E-value=4.4e-19 Score=219.43 Aligned_cols=108 Identities=27% Similarity=0.401 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+|++|..||++|+.+.++|+|++|||+..|+ |+||+.||++|||||||+.||..|.|. +++.|++|||++
T Consensus 222 ~~lk~C~~iLk~l~~~k~awpF~~PVD~v~Lg--------LpDY~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL~ 292 (640)
T KOG1474|consen 222 ELLKQCLSILKRLMKHKHAWPFNEPVDVVKLG--------LPDYHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRLT 292 (640)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCCCcCHHhcC--------CcchhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHHH
Confidence 35999999999999999999999999996665 666999999999999999999999999 677799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHhHh
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 1117 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLdyV 1117 (2031)
|.||++||+.+++|+.||..|+..|+.+|+.+...+.
T Consensus 293 F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 293 FDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998776554
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.59 E-value=3.2e-15 Score=149.38 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHhc-chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 1000 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss-~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
+.+.++|..++..++.+ +.+++|..||++.. .++++|..+|++||||+||+.|+..|.|. +...|.+|++
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~ 72 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKL--------LGIPDYFDIVKNPMDLSTIRRKLDTGQYQ-DPWQYVDDVW 72 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccc--------cCCCcHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 56689999999999988 99999999998843 46889999999999999999999999999 6888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
++|.||..||+.++.++.+|..|.+.|+..+..
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 73 LMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987764
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.57 E-value=4.6e-15 Score=151.08 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
..++|..||..++.++.+++|..||++ .++++|+.+|++||||+||+.||..|.|. +.+.|..|+++||
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~----------~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~-~~~ef~~D~~lif 74 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDL----------LKYPDYRDIIDTPMDLGTVKETLFGGNYD-DPMEFAKDVRLIF 74 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCCh----------hhcCcHHHHhCCcccHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 478999999999999999999999987 24889999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCC-CchHHHHHHHhhhhhHhHHHHHHHhH
Q 000150 1082 HHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1082 sNc~tYN~d-gSEVveLAeKLSQiFESrYkKqVLdy 1116 (2031)
.||..||++ ++.|+.+|..|...|+..+.+.+..+
T Consensus 75 ~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 75 SNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 89999999999999999999987765
No 4
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=5e-15 Score=144.43 Aligned_cols=99 Identities=27% Similarity=0.417 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+|++|+.||..|+.++.+++|..||++. ..++++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~--------~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~-s~~ef~~D~~li~ 71 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVV--------ALGLPDYFDIIKKPMDLGTVKKKLEKGEYS-SPEEFAADVRLTF 71 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCcc--------ccCCCCHHHHHcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 4899999999999999999999999762 346889999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrY 1109 (2031)
.||..||+.++.+..+|..|.+.|+.+|
T Consensus 72 ~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 72 ANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999764
No 5
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=1.3e-14 Score=142.16 Aligned_cols=96 Identities=26% Similarity=0.438 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
|..|+.||.+|..++.+++|..||+.. .+++|..+|++||||+||+.|+..|.|. +.+.|.+|+++||.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~----------~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK----------LVPGYRKIIKKPMDFSTIREKLESGQYK-TLEEFAEDVRLVFD 70 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc----------ccCCHHHHhCCCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHH
Confidence 579999999999999999999999762 4689999999999999999999999998 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrY 1109 (2031)
||..||++++.+..+|..|.+.|+.+|
T Consensus 71 Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 71 NCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998764
No 6
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.53 E-value=1.5e-14 Score=142.49 Aligned_cols=94 Identities=19% Similarity=0.334 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
++.|..||+.++..+.+++|..||++ .++++|..+|++||||+||+.|+..|.|. +.+.|.+|++++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~ 70 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTA----------DEAEDYKKVITNPMDLQTMQTKCSCGSYS-SVQEFLDDMKLVFS 70 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCh----------hhcccHHHHcCCcCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 47899999999999999999999986 24889999999999999999999999999 77889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
||..||++++.|...|.+|.+.|..
T Consensus 71 Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 71 NAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765
No 7
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.52 E-value=1.8e-14 Score=144.07 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=90.1
Q ss_pred HHHH-HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1003 MKQC-RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1003 mKRC-r~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
++.| ..||+.+..++.+++|..||++ ...++++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~--------~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~D~~li~ 76 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDA--------VKLNLPDYHKIIKTPMDLGTIKKRLENNYYW-SASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCc--------ccccCCcHHHHHcCcccHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Confidence 4555 5789999999999999999987 3346889999999999999999999999999 7778999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
.||..||++++.+..+|..|.+.|+....+
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988876653
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.51 E-value=2.8e-14 Score=140.06 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhc---chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1003 MKQCRKVLRCAAAA---DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1003 mKRCr~ILkeLlss---~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
+++|..||+.|+.. ..+++|..||++ ...++++|..+|.+||||+||+.|+..|.|. +.+.|..|+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDP--------EALGLHDYHDIIKHPMDLSTIKKKLDNREYA-DAQEFAADVRL 72 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCc--------cccCCCcHHHHccCCCcHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 58999999999988 889999999987 3346889999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHH
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrY 1109 (2031)
+|+||..||+.++.++.+|..|.+.|+.+|
T Consensus 73 i~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 73 MFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998765
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.49 E-value=5.6e-14 Score=142.07 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
.+..|..||..++..+.+++|..||+. .++++|..+|++||||+||+.|+..|.|. +.+.|.+|+++||
T Consensus 13 ~~~~c~~il~~l~~~~~s~~F~~pvd~----------~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~-s~~~f~~Dv~LI~ 81 (115)
T cd05504 13 NLSALEQLLVEIVKHKDSWPFLRPVSK----------IEVPDYYDIIKKPMDLGTIKEKLNMGEYK-LAEEFLSDIQLVF 81 (115)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCc----------cccccHHHHhcCcccHHHHHHHHccCCCC-CHHHHHHHHHHHH
Confidence 479999999999999999999999986 35889999999999999999999999999 6788999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
.||..||+.++.++.+|..|.+.|+..+++.
T Consensus 82 ~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 82 SNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988865
No 10
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.49 E-value=6.8e-14 Score=138.30 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
-.++|.+|++.+...+.+++|..||++ ...++++|..+|++||||+||+.|+..+.|. +...|..|++++|
T Consensus 5 ~~~~~~~ii~~l~~~~~a~~F~~pv~~--------~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 75 (103)
T cd05500 5 QHKFLLSSIRSLKRLKDARPFLVPVDP--------VKLNIPHYPTIIKKPMDLGTIERKLKSNVYT-SVEEFTADFNLMV 75 (103)
T ss_pred HHHHHHHHHHHHHcCCCChhhcCCCCc--------ccccCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 379999999999999999999999987 3457899999999999999999999999998 7788999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVL 1108 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESr 1108 (2031)
+||..||+.++.++.+|..|.+.|+..
T Consensus 76 ~Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 76 DNCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988863
No 11
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.49 E-value=8e-14 Score=139.01 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcc---cccCCChhhHHhhHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF---GAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaa---G~Y~GS~EaFAEDVR 1078 (2031)
-.++|..||.+++.++.+++|..||++ +.++|..+|++||||+||+.|+.. +.|. +.+.|.+|++
T Consensus 5 ~~~~c~~il~~l~~~~~s~~F~~pv~~-----------~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~-s~~~f~~D~~ 72 (109)
T cd05502 5 DQRKCERLLLELYCHELSLPFHEPVSP-----------SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS-SPEEFVADVR 72 (109)
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCC-----------CCCCHHHHCCCCccHHHHHHHHhcCCCCCCC-CHHHHHHHHH
Confidence 379999999999999999999999976 367899999999999999999998 5888 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
++|+||..||++++.+..+|..|.+.|+..+.+++
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999888753
No 12
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=8.2e-14 Score=139.13 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
+++|..||.+|...+.+++|..+ + .++++|+.+|++||||+||+.|+..|.|. +.+.|.+||++||.
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p----------~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~-s~~ef~~D~~Lif~ 70 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--P----------YYIRDYCQGIKEPMWLNKVKERLNERVYH-TVEGFVRDMRLIFH 70 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--C----------CCCCchHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Confidence 57899999999999999999442 2 26889999999999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
||..||+++ .+..+|..|+..|+..|.+.+
T Consensus 71 N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 71 NHKLFYKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999888643
No 13
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=6.8e-14 Score=137.75 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1003 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1003 mKRCr~ILkeLls---s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
++.|..||..|+. .+.+++|..||++. ..++++|..+|++||||++|+.|+..+.|. +.+.|..|+++
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~--------~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~-s~~ef~~D~~l 72 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPV--------ALNIPNYFSIIKKPMDLGTISKKLQNGQYQ-SAKEFERDVRL 72 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCcc--------ccCCCCHHHHhcCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 5899999999997 45689999999873 235788999999999999999999999999 77789999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHH
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrY 1109 (2031)
+|.||..||++++.+..+|..|.+.|+..|
T Consensus 73 i~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 73 IFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998754
No 14
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.46 E-value=1.3e-13 Score=136.98 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
.-+.|..|++.+..++.+++|..||+. .+.++|..+|++||||+||+.|+..|.|. +.+.|..|++++|
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~----------~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~ 72 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTE----------DIAPGYHSVVYRPMDLSTIKKNIENGTIR-STAEFQRDVLLMF 72 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCc----------cccCCHHHHhCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 468999999999999999999999976 35789999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYk 1110 (2031)
+||..||++++.+..+|..|.+.+.....
T Consensus 73 ~Na~~yN~~~s~v~~~A~~l~~~~~~~~~ 101 (104)
T cd05507 73 QNAIMYNSSDHDVYLMAVEMQREVMSQIQ 101 (104)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999877665443
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.46 E-value=1.5e-13 Score=134.82 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
.++|+.|+..+..++.+++|..||++. .+++|..+|++||||+||+.|+..+.|. +.+.|..||+++|+
T Consensus 3 ~~~~~~il~~l~~~~~a~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~li~~ 71 (101)
T cd05509 3 YTQLKKVLDSLKNHKSAWPFLEPVDKE----------EAPDYYDVIKKPMDLSTMEEKLENGYYV-TLEEFVADLKLIFD 71 (101)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChh----------hcCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHH
Confidence 589999999999999999999999872 3789999999999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
||..||+.++.+..+|..|.+.|+..+++
T Consensus 72 Na~~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 72 NCRLYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887653
No 16
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.42 E-value=3.8e-13 Score=134.39 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1002 IMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
+.++|+.||+.++.... +++|.+|+++ .++++|+.+|++||||+||+.|+..|.|. +...|..
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~----------~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~ef~~ 70 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLEDLEK 70 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc----------ccCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 47899999999996666 6778777654 46899999999999999999999999999 7788999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
|++++|.||..||+.++.++.+|..|...|+..+++
T Consensus 71 D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 71 DVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988775
No 17
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.40 E-value=5.1e-13 Score=134.90 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHhc-chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 1000 DVIMKQCRKVLRCAAAA-DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss-~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
+.+.++|+.||+.+... +.+++|..||++ ..+++|..+|++||||+||+.|+..+.|. +.+.|.+|++
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 74 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSK----------REAPDYYDIIKKPMDLGTMLKKLKNLQYK-SKAEFVDDLN 74 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCCh----------hhcCCHHHHhcCccCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 34689999999999988 899999999987 24889999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCc-hHHHHHHHhhhhhHhHHHH
Q 000150 1079 EVWHHICTAYSDQS-DLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1079 LVWsNc~tYN~dgS-EVveLAeKLSQiFESrYkK 1111 (2031)
++|.||..||++++ .++.+|..|.+.|+.....
T Consensus 75 Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~ 108 (112)
T cd05510 75 LIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKL 108 (112)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 5778999998888776553
No 18
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.38 E-value=8.8e-13 Score=130.74 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+-+-.+.+++.|. ++.+++|..||++ ..+++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++|
T Consensus 4 l~~~L~~~~~~~~-~~~s~~F~~PV~~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~ 71 (99)
T cd05508 4 LSKLLKFALERMK-QPGAEPFLKPVDL----------EQFPDYAQYVFKPMDLSTLEKNVRKKAYG-STDAFLADAKWIL 71 (99)
T ss_pred HHHHHHHHHHHHh-CcCcchhcCCCCh----------hhCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 3456677888888 8999999999987 24789999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
.||..||++++.+..+|..|.+.++.
T Consensus 72 ~Na~~YN~~~s~i~~~A~~l~~~~~~ 97 (99)
T cd05508 72 HNAIIYNGGDHKLTQAAKAIVKICEQ 97 (99)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999877653
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.37 E-value=9e-13 Score=130.47 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+.+.|..||+.+...+.+++|..||+. ...++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~----------~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 70 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTD----------FIAPGYSSIIKHPMDFSTMKEKIKNNDYQ-SIEEFKDDFKLMC 70 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCc----------cccccHHHHHcCccCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 357899999999999999999999975 24689999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhh
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQ 1103 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQ 1103 (2031)
.||..||++++.++.+|..|.+
T Consensus 71 ~Na~~yN~~~s~~~~~A~~L~~ 92 (98)
T cd05513 71 ENAMKYNKPDTIYYKAAKKLLH 92 (98)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999998864
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.33 E-value=2e-12 Score=130.62 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
-..|+.|++.++.++.+++|..||+.. .+++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|.
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~vI~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~ 73 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEE----------EVPDYYEIIKQPMDLQTILQKLDTHQYL-TAKDFLKDIDLIVT 73 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCcc----------ccCcHHHHHcCCCCHHHHHHHHcCCCcC-CHHHHHHHHHHHHH
Confidence 346789999999999999999999872 4789999999999999999999999999 78889999999999
Q ss_pred hhhhhcCCC----chHHHHHHHhhhhhHhHHHHHH
Q 000150 1083 HICTAYSDQ----SDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1083 Nc~tYN~dg----SEVveLAeKLSQiFESrYkKqV 1113 (2031)
||..||+.+ +.++.+|..|.+.|...+.+.+
T Consensus 74 Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 74 NALEYNPDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred HHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 999999984 6899999999998888777543
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.31 E-value=2.9e-12 Score=126.60 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHh
Q 000150 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2031)
Q Consensus 1004 KRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsN 1083 (2031)
..++.+|..|..++.+++|..||+. ..+++|..+|++||||+||+.|+..+.|. +.+.|..|++++|.|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~----------~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~D~~li~~N 72 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDL----------SEVPDYLDHIKQPMDFSTMRKKLESQRYR-TLEDFEADFNLIINN 72 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCc----------cccCCHHHHhcCCcCHHHHHHHHhCCCCC-CHHHHHHHHHHHHHH
Confidence 4578899999999999999999976 24889999999999999999999999999 788899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhh
Q 000150 1084 ICTAYSDQSDLLQLAGKLCQ 1103 (2031)
Q Consensus 1084 c~tYN~dgSEVveLAeKLSQ 1103 (2031)
|..||++++.++..|..|.+
T Consensus 73 a~~yN~~~s~~~~~A~~l~~ 92 (98)
T cd05512 73 CLAYNAKDTIFYRAAVRLRD 92 (98)
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999998865
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.29 E-value=7.5e-12 Score=126.20 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhh
Q 000150 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2031)
Q Consensus 1007 r~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~t 1086 (2031)
+.|+..|..++.+++|..||++. ..++|..+|++||||+||+.|+..+.|. +.+.|.+|++++|+||..
T Consensus 6 ~~ii~~l~~~~~s~~F~~pv~~~----------~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~ 74 (112)
T cd05511 6 DEIVNELKNLPDSWPFHTPVNKK----------KVPDYYKIIKRPMDLQTIRKKISKHKYQ-SREEFLEDIELIVDNSVL 74 (112)
T ss_pred HHHHHHHHhCCCchhhcCCCChh----------hcccHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999873 3689999999999999999999999999 788899999999999999
Q ss_pred hcCCCchHHHHHHHhhhhhHhHHHHHHH
Q 000150 1087 AYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2031)
Q Consensus 1087 YN~dgSEVveLAeKLSQiFESrYkKqVL 1114 (2031)
||+.++.+..+|..|.+.|+..+.....
T Consensus 75 yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 75 YNGPDSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999988887775543
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.28 E-value=8.6e-12 Score=123.52 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhh
Q 000150 1003 MKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~------~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAED 1076 (2031)
-+.|+.|++.+.... -+++|..|++. ...++|..+|++||||+||+.|+..|.|. +...|..|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~----------~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~-s~~~f~~D 70 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSK----------KLYPDYYVIIKRPIALDQIKRRIEGRAYK-SLEEFLED 70 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC----------CCCcCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHH
Confidence 478999999999433 46777777654 44789999999999999999999999999 77889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHH
Q 000150 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLY 1109 (2031)
Q Consensus 1077 VRLVWsNc~tYN~dgSEVveLAeKLSQiFESrY 1109 (2031)
++++|.||..||++++.+..+|..|.+.|+..|
T Consensus 71 ~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 71 FHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999888765
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.27 E-value=1e-11 Score=123.77 Aligned_cols=97 Identities=12% Similarity=0.213 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhh
Q 000150 1003 MKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~------~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAED 1076 (2031)
+++|+.|+..+.... .+++|.+|++. .++++|..+|++||||+||+.|+..+.|. +.+.|.+|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~----------~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D 70 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK----------SEYPDYYDVIKKPIDMEKIRSKIEGNQYQ-SLDDMVSD 70 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc----------ccCCcHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHH
Confidence 578999999998443 34666666544 46789999999999999999999999999 78889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHH
Q 000150 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1077 VRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYk 1110 (2031)
++++|.||..||+.++.++..|..|.+.|...+.
T Consensus 71 ~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 71 FVLMFDNACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988877653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.26 E-value=1.5e-11 Score=124.24 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcchh------hhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhh
Q 000150 1003 MKQCRKVLRCAAAADEE------RVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S------~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAED 1076 (2031)
++.|..|+..+...... .+|..++. ..+.|+|+.+|++||||+||+.|+..+.|. +...|.+|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~----------~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D 72 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPK----------RRNEPEYYEVVSNPIDLLKIQQKLKTEEYD-DVDDLTAD 72 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCC----------cccCCCHHHHhCCccCHHHHHHHhCcCCCC-CHHHHHHH
Confidence 68999999999953332 44555433 356899999999999999999999999999 78889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1077 VRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
++++|.||..||+.++.++.+|..|.+.|+..+.+++
T Consensus 73 ~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 73 FELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999887665
No 26
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.23 E-value=4.6e-12 Score=113.78 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=36.3
Q ss_pred ecCeEEEEecccc-CCCCCCCCcceeeccccc-----ccccCCCccEEEEEecc
Q 000150 298 FEDFCLLAVGEVD-PRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSD 345 (2031)
Q Consensus 298 ~~~~~v~slG~i~-~rp~yh~~~~i~PvGyks-----~~~d~~~~slf~cev~d 345 (2031)
.|+++|+|||+|. +||+||++++|||+||+| |+.|+.+.+.|+|+|+|
T Consensus 1 igsl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 1 IGSLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp -TTEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred CCceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 4889999999997 778999999999999999 57799999999999998
No 27
>smart00297 BROMO bromo domain.
Probab=99.23 E-value=2.6e-11 Score=118.15 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+.+.|..|++.+..+..+++|..|++.. .+++|..+|.+||||++|..|+..|.|. +...|.+|++++
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~F~~~~~~~----------~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~-s~~ef~~D~~li 75 (107)
T smart00297 7 KLQSLLKAVLDKLDSHRLSWPFLKPVDRK----------EAPDYYDIIKKPMDLSTIKKKLENGKYS-SVEEFVADVQLM 75 (107)
T ss_pred HHHHHHHHHHHHHHhCccchhhccCCChh----------hccCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 35677888888888889999999998762 2678999999999999999999999998 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
|.||..||+.++.++..|..|.+.|+..+.+
T Consensus 76 ~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 76 FSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887653
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.22 E-value=3.2e-11 Score=124.25 Aligned_cols=99 Identities=21% Similarity=0.136 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHH---hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhh
Q 000150 1000 DVIMKQCRKVLRCAA---AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLED 1076 (2031)
Q Consensus 1000 DlImKRCr~ILkeLl---ss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAED 1076 (2031)
+...++|..+++.++ ..+.+++|.+||+... +.++|..+|++||||+||+.|+..+.|. +.+.|.+|
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~---------~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D 92 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA---------WYPDYWNRVPVPMDLETIRSRLENRYYR-SLEALRHD 92 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccc---------cCCcHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHH
Confidence 445788999999999 8999999999998732 5789999999999999999999999999 68889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHhH
Q 000150 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVL 1108 (2031)
Q Consensus 1077 VRLVWsNc~tYN~dgSEVveLAeKLSQiFESr 1108 (2031)
++++|.||..||+.++.+..+|..|.+.|+..
T Consensus 93 v~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~ 124 (128)
T cd05529 93 VRLILSNAETFNEPNSEIAKKAKRLSDWLLRI 124 (128)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877754
No 29
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.21 E-value=2.5e-11 Score=113.65 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhh
Q 000150 1006 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 1085 (2031)
Q Consensus 1006 Cr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~ 1085 (2031)
|+.||+.++.++.+++|..|++. ..+++|..+|++||||.+|+.|+.+|.|. +.+.|..||+++|.|+.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~----------~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~-s~~~f~~Dv~~i~~Na~ 69 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDP----------KEYPDYYEIIKNPMDLSTIRKKLENGKYK-SIEEFEADVRLIFQNAR 69 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHT----------TTSTTHHHHSSSS--HHHHHHHHHTTSSS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCCh----------hhCCCHHHHHhhccchhhhhHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999855 45789999999999999999999999999 78889999999999999
Q ss_pred hhcCCCchHHHHHHH
Q 000150 1086 TAYSDQSDLLQLAGK 1100 (2031)
Q Consensus 1086 tYN~dgSEVveLAeK 1100 (2031)
.||+.++.++.+|++
T Consensus 70 ~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 70 RYNPPDSPIYKAAEK 84 (84)
T ss_dssp HHSCTTSHHHHHHHH
T ss_pred HHCCCcCHHHHHhcC
Confidence 999999999998874
No 30
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.20 E-value=3.7e-11 Score=112.56 Aligned_cols=95 Identities=27% Similarity=0.339 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhc--chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1003 MKQCRKVLRCAAAA--DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1003 mKRCr~ILkeLlss--~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
...|..++..+... +.+++|..|++. ..+++|..+|++||||++|+.|+..+.|. +...|.+|++++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~----------~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~-s~~~f~~D~~li 70 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDP----------KEAPDYYEVIKNPMDLSTIKKKLKNGEYK-SLEEFEADVRLI 70 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCCh----------hcCCCHHHHHhCcccHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 46799999999988 899999999977 34778999999999999999999999998 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVL 1108 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESr 1108 (2031)
|.||..||+.++.+..+|..|...|+..
T Consensus 71 ~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 71 FSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998887754
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.17 E-value=7.9e-11 Score=118.17 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1002 IMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
+.+.|+.|+..+..... +++|..+.++ ..+++|..+|++||||.||+.|+..|.|. +.+.|.+
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k----------~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~-s~~ef~~ 71 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSK----------KKNPDYYERITDPVDLSTIEKQILTGYYK-TPEAFDS 71 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCc----------ccCCchhhhCCCCcCHHHHHHHHcCCCCC-CHHHHHH
Confidence 35778899999984333 3555555433 56789999999999999999999999999 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
|++++|.||..||++++.++.+|..|.+.|+.
T Consensus 72 D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~~ 103 (106)
T cd05525 72 DMLKVFRNAEKYYGRKSPIGRDVCRLRKAYYQ 103 (106)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988875
No 32
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.14 E-value=9.2e-11 Score=117.10 Aligned_cols=93 Identities=13% Similarity=0.223 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhc------chhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhH
Q 000150 1004 KQCRKVLRCAAAA------DEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2031)
Q Consensus 1004 KRCr~ILkeLlss------~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDV 1077 (2031)
||+..|+..++.. ..+.+|..+++ ..++++|..+|++||||+||+.|+..+.|. +.+.|.+|+
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~----------~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~-s~~ef~~D~ 71 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPS----------KKDYPDYYKIILEPIDLKTIEHNIRNDKYA-TEEELMDDF 71 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCC----------cccCccHHHHcCCCcCHHHHHHHHCCCCCC-CHHHHHHHH
Confidence 6788888888743 23344544443 367899999999999999999999999999 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1078 RLVWsNc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
++||.||..||+.++.|+.+|..|...|+.
T Consensus 72 ~li~~Na~~yN~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 72 KLMFRNARHYNEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999877654
No 33
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.14 E-value=1e-10 Score=116.64 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHh
Q 000150 1004 KQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHH 1083 (2031)
Q Consensus 1004 KRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsN 1083 (2031)
+.|+.++..++..... -..|+...++.+ +....+++|..+|++||||+||+.|+..+.|. +...|..|+++||.|
T Consensus 3 ~~~~~l~~~i~~~~d~--~gr~~~~~F~~l--p~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDP--SGRLISELFQKL--PSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYK-SIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCc--CCCChhHHHhcC--CCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCC-CHHHHHHHHHHHHHH
Confidence 5789999999855443 344444444433 23456889999999999999999999999999 788899999999999
Q ss_pred hhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1084 ICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1084 c~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
|..||++++.++..|..|...|+.
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887763
No 34
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.10 E-value=1.7e-10 Score=115.14 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=70.8
Q ss_pred hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHHHH
Q 000150 1018 EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQL 1097 (2031)
Q Consensus 1018 ~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVveL 1097 (2031)
-+++|.++++. ...++|..+|++||||+||+.|+..+.|. +...|..|+++||.||..||+.++.++.+
T Consensus 23 ~s~pF~~~p~~----------~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~lm~~Na~~yN~~~s~i~~~ 91 (103)
T cd05520 23 LAEPFLKLPSK----------RKYPDYYQEIKNPISLQQIRTKLKNGEYE-TLEELEADLNLMFENAKRYNVPNSRIYKD 91 (103)
T ss_pred ccHhhhcCCCc----------ccCCCHHHHcCCCcCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 55666666554 45789999999999999999999999999 78889999999999999999999999999
Q ss_pred HHHhhhhhHh
Q 000150 1098 AGKLCQNFEV 1107 (2031)
Q Consensus 1098 AeKLSQiFES 1107 (2031)
|..|.+.|+.
T Consensus 92 A~~L~~~f~~ 101 (103)
T cd05520 92 AEKLQKLMQA 101 (103)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.99 E-value=6.9e-10 Score=112.43 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=73.4
Q ss_pred cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHH
Q 000150 1016 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2031)
Q Consensus 1016 s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVv 1095 (2031)
.+...+|.+||.... ....++++|..+|++||||+||+.|+..|.|. +.+.|.+|++++|+||..||+.++.+.
T Consensus 16 lp~~~~~~~~v~~~~-----~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~LI~~N~~~yNg~~s~~~ 89 (109)
T cd05492 16 LPPDTTNRAIVLNKR-----GKATKLPKRRRLIHTHLDVADIQEKINSEKYT-SLEEFKADALLLLHNTAIFHGADSEQY 89 (109)
T ss_pred CcccccccccccccC-----chhccCCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 355688999987532 23457899999999999999999999999999 688899999999999999999999999
Q ss_pred HHHHHhhhhhH
Q 000150 1096 QLAGKLCQNFE 1106 (2031)
Q Consensus 1096 eLAeKLSQiFE 1106 (2031)
.+|..|.+...
T Consensus 90 ~~A~~l~~d~~ 100 (109)
T cd05492 90 DAARWLYRDTC 100 (109)
T ss_pred HHHHHHHHHHH
Confidence 99998876443
No 36
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.96 E-value=1.9e-09 Score=107.72 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHh---cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1003 MKQCRKVLRCAAA---ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1003 mKRCr~ILkeLls---s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
|+.+-..|+.+.. ..-+++|.+++++ ...++|..+|++||||+||+.|+..+.|. +...|..|+++
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~----------~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~-s~~~f~~D~~l 74 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDK----------AREPEYYQEISNPISLDDIKKKVKRRKYK-SFDQFLNDLNL 74 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCc----------cccCcHHHHhCCCcCHHHHHHHHccCCCC-CHHHHHHHHHH
Confidence 4444444444443 2355666666554 35789999999999999999999999998 77889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
+|.|+..||+.++.+..+|..|.+.|+.
T Consensus 75 i~~Na~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 75 MFENAKLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888875
No 37
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.94 E-value=1.6e-09 Score=109.05 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+-++|+.+++.+....... +.|+...+..+ +....+++|..+|++||||+||+.|+.. |. +.+.|.+|++++|
T Consensus 2 l~~~~~~l~~~i~~~~~~~--g~~~~~~F~~l--p~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~-s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEEN--GIEIHPIFNVL--PLRKDYPDYYKIIKNPLSLNTVKKRLPH--YT-NAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcC--CCCchHhhhcC--CccccCccHHHHhcCCCCHHHHHHHHHc--CC-CHHHHHHHHHHHH
Confidence 3588999999998544432 34444444432 2345789999999999999999999998 88 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHh
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFES 1107 (2031)
.||..||+.++.++..|..|.+.|..
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~ 100 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYIND 100 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988776664
No 38
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.84 E-value=7.7e-10 Score=124.71 Aligned_cols=58 Identities=45% Similarity=1.190 Sum_probs=50.7
Q ss_pred CCCCCcccc---ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1147 IPKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1147 lPr~pwedd---~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+.|+|- .|.+||...+++++|+||.||++||||||.|||.+.|+|.|.|-.|...
T Consensus 271 vk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 271 VKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred HHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 344678654 6778888889999999999999999999999999999999999999743
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.76 E-value=6.2e-09 Score=138.34 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhh
Q 000150 1006 CRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHIC 1085 (2031)
Q Consensus 1006 Cr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~ 1085 (2031)
|..||.+|..++.+|||..||.... ++||.+||++||||.||..++..|.|. .++.|+.||++||.||.
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~----------vp~Y~~IIk~Pmdl~tir~k~~~~~Y~-~~eef~~Di~lvf~Nc~ 1374 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE----------VPDYYDIIKKPMDLSTIREKLSKGIYP-SPEEFATDIELVFDNCE 1374 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh----------cccHHHHhcChhHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998844 679999999999999999999999999 77789999999999999
Q ss_pred hhcCCCchHHHHHHHhhhhhHhHHH
Q 000150 1086 TAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1086 tYN~dgSEVveLAeKLSQiFESrYk 1110 (2031)
+||.+ ++|......|..-|+.++.
T Consensus 1375 ~yN~~-s~i~~ag~~l~~ff~~~~~ 1398 (1404)
T KOG1245|consen 1375 TYNED-SEIGRAGTCLRRFFHKRWR 1398 (1404)
T ss_pred Hhccc-hhhhhhcchHHHHHHHHHH
Confidence 99999 8888877778777776443
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.59 E-value=1.4e-08 Score=125.34 Aligned_cols=50 Identities=40% Similarity=1.056 Sum_probs=47.1
Q ss_pred cccccccCCCCCCCeEeecCCCCC-CcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSG-YHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsa-YHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..|.+|...+..+.||+||.|+.+ ||+|||+|+|.++|-+.|||+.|+--
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 469999999899999999999999 99999999999999999999999755
No 41
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.42 E-value=3.4e-07 Score=108.30 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHH------hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1002 IMKQCRKVLRCAA------AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1002 ImKRCr~ILkeLl------ss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
+-++|..++..+. ....+++|..+++. .-.|+|+.||+.||||++|.+++..+.|. +.+.|..
T Consensus 143 ~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k----------~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~-s~eef~~ 211 (371)
T COG5076 143 LYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSK----------REYPDYYEIIKSPMDLLTIQKKLKNGRYK-SFEEFVS 211 (371)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccCCcc----------ccCCChheeecchhhHHHHHHHHHhhhhh-hHHHHHH
Confidence 6678888877776 23333444444433 55789999999999999999999999999 8888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHhHhhhc
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKF 1120 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLdyVQK~ 1120 (2031)
|..+||.||+.||++++.|...|..|...|..++..+.....+..
T Consensus 212 D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~ 256 (371)
T COG5076 212 DLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLELS 256 (371)
T ss_pred HHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhhc
Confidence 999999999999999999999999999999999998877655443
No 42
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.36 E-value=1.2e-07 Score=82.89 Aligned_cols=48 Identities=44% Similarity=1.234 Sum_probs=43.0
Q ss_pred ccccccCCCCCCCeEeecCCCCCCcccccCCCCC--CCCCCCccCCcCCC
Q 000150 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLT--RVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1156 ~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~--eVPeGDWyCPsCi~ 1203 (2031)
+|.+|++..+.+.||.||.|+.+||+.|++|+.. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4899999888999999999999999999999987 56667999999963
No 43
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=98.32 E-value=4.5e-07 Score=115.87 Aligned_cols=130 Identities=22% Similarity=0.414 Sum_probs=90.8
Q ss_pred ccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCcC---CCcc---------CCCCcccccc
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK---NKYM---------SQVPHVSSRI 1221 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c~---~~~~---------sQE~~~~sq~ 1221 (2031)
++.|++|+ +.+.++||..|++.||+-|+.||+..+|+..|-|--|...... +... +.++.+..+.
T Consensus 344 ddhcrf~~---d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 344 DDHCRFCH---DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRY 420 (1414)
T ss_pred cccccccC---cccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCcc
Confidence 46899997 7799999999999999999999999999999999999744211 1111 2222223344
Q ss_pred ccccccchhhhhhhhhhhhhhhccccCceeecchhhHHH-HHHHhhhhhcch------hhhHHhhhhccccchhhHHHHH
Q 000150 1222 PKRRHQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIF-LLKFLCDELLNS------TNIREHLERCASVSVDLQQKIR 1294 (2031)
Q Consensus 1222 erK~~~GEf~~~f~ee~~hLaid~~EKEFW~LS~~ERi~-LLKyL~De~LSs------ALIReeLdq~~dlt~EL~eKyr 1294 (2031)
.++|++- ..+-....+++...|++++.-+.. +|+.|..+..+. ...++++..+|.++.+++++.|
T Consensus 421 gr~ywfi--------~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT~~ltne~R 492 (1414)
T KOG1473|consen 421 GRKYWFI--------SRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLTEELTNELR 492 (1414)
T ss_pred ccchhce--------eeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccchhhhhhhhh
Confidence 4444443 322223567899999999655555 445554333332 2235899999999999999988
No 44
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.31 E-value=1.8e-07 Score=115.17 Aligned_cols=53 Identities=32% Similarity=0.939 Sum_probs=47.1
Q ss_pred ccccccccCCCCCCCeEeecCCCCCCcccccCCC--CCCCCCCCccCCcCCCCCc
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPP--LTRVPEGNWYCPPCLSGNC 1206 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PP--L~eVPeGDWyCPsCi~~~c 1206 (2031)
.++|..|++...-.++++||+|+..||++||.|| ...+|.|.|||+.|.++..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence 4589999987666778999999999999999999 5889999999999998843
No 45
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.31 E-value=1.4e-07 Score=122.52 Aligned_cols=164 Identities=21% Similarity=0.391 Sum_probs=109.8
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCcC----CCccCCCCccccccccccccchh
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK----NKYMSQVPHVSSRIPKRRHQGEF 1230 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c~----~~~~sQE~~~~sq~erK~~~GEf 1230 (2031)
..|..|.+.... .+++|+.|+..||.+|+.||+..+|+|+|.|+.|....+. ..++.+....+....+..+...+
T Consensus 156 ~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~ 234 (904)
T KOG1246|consen 156 PQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNF 234 (904)
T ss_pred hhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhh
Confidence 479999988777 5559999999999999999999999999999999887433 23444444444444444444444
Q ss_pred hhhhhhhhhhhh--hccccCceeecchhhHHH-HHHHhhhhhcchhhhHHhhhhcc-----ccchhhHHHHHhhhHHHhh
Q 000150 1231 TCRILEEVFHLA--ATMEMRDYWDYSDKERIF-LLKFLCDELLNSTNIREHLERCA-----SVSVDLQQKIRSLSLEWRN 1302 (2031)
Q Consensus 1231 ~~~f~ee~~hLa--id~~EKEFW~LS~~ERi~-LLKyL~De~LSsALIReeLdq~~-----dlt~EL~eKyrdl~~ElnN 1302 (2031)
...|+....+.. .+..|++||+.+...-.. ...|+.|.... . .....+ .......++|+.++|||+|
T Consensus 235 ~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~--~---~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~ 309 (904)
T KOG1246|consen 235 KKDYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTK--E---FGSGFPKSASGPLLGSEAEKYSNSGWNLNN 309 (904)
T ss_pred hccccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhc--c---ccccccccCCCCCCCcchhhhccCcccccc
Confidence 445555554443 457899999996543111 22455432111 1 111111 1111456799999999999
Q ss_pred ccchhhhhhhcccccccccccCC
Q 000150 1303 LKFREEILAGKVARDKASVLSGT 1325 (2031)
Q Consensus 1303 Lpl~eESLl~~i~k~~~s~~~~~ 1325 (2031)
+|..+++++.+.. .+++++..+
T Consensus 310 i~~~~~svl~~~~-~di~g~~~p 331 (904)
T KOG1246|consen 310 IPRLEGSVLSHID-TDISGVTVP 331 (904)
T ss_pred cccCCcccccccc-CCcCccccc
Confidence 9999999999998 667776643
No 46
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=98.28 E-value=4.9e-07 Score=79.26 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=34.0
Q ss_pred ccCCCCCCCCcceeeccccc-----ccccCCCccEEEEEecc
Q 000150 309 VDPRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSD 345 (2031)
Q Consensus 309 i~~rp~yh~~~~i~PvGyks-----~~~d~~~~slf~cev~d 345 (2031)
+.+|+.||++++|||+||+| |.+||...+.|+|.|.|
T Consensus 3 ~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y~c~i~~ 44 (44)
T smart00541 3 PIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNYSCVIDE 44 (44)
T ss_pred cccCCCcccCCEEecCCEEEEEEEecccCCCCEEEEEEEECC
Confidence 45899999999999999999 88999999999998865
No 47
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.26 E-value=2.7e-07 Score=105.20 Aligned_cols=59 Identities=31% Similarity=0.799 Sum_probs=49.0
Q ss_pred ccCCCCCCcccc---ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCC-cCCCC
Q 000150 1144 ASEIPKAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCP-PCLSG 1204 (2031)
Q Consensus 1144 ~s~lPr~pwedd---~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCP-sCi~~ 1204 (2031)
+..+..++|.|. .|.+|++....+++++||.||++||++|++ |..+|.|.|.|- .|...
T Consensus 301 v~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 301 VGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred HhHHhhcchhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 344455788766 566788888899999999999999999999 999999999998 46544
No 48
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.13 E-value=8e-06 Score=83.69 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
-+.-..++..++.+... -+.++..++..+-... ++|..+|++||+|..|+.|+..|.|. +.+.|.+|+.++|.
T Consensus 5 q~~l~~l~~~V~~~~D~--~Gr~~s~~f~~LP~~~----~~~~~~ik~Pi~l~~Ik~ki~~~~Y~-~ld~~~~D~~lmf~ 77 (110)
T cd05526 5 QELLATLFVSVMNHQDE--EGRCYSDSLAELPELA----VDGVGPKKIPLTLDIIKRNVDKGRYR-RLDKFQEDMFEVLE 77 (110)
T ss_pred HHHHHHHHHHHHhccCC--CCCCchHHHHHCCCcc----cCchhhhcCCccHHHHHHHHHcCCcC-cHHHHHHHHHHHHH
Confidence 34445566666644322 1344444444433311 13346899999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
|+.+||..++.|+..|..|+..|...+.+.+
T Consensus 78 NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 78 RARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887654
No 49
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.08 E-value=3.1e-06 Score=90.33 Aligned_cols=31 Identities=48% Similarity=1.187 Sum_probs=28.1
Q ss_pred CCcccccCCCCCCCCCCCccCCcCCCCCcCC
Q 000150 1178 GYHTYCLTPPLTRVPEGNWYCPPCLSGNCKN 1208 (2031)
Q Consensus 1178 aYHl~CL~PPL~eVPeGDWyCPsCi~~~c~~ 1208 (2031)
+||++||+|||+.+|+|+|+||.|.....+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 5999999999999999999999999875543
No 51
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.87 E-value=7e-06 Score=84.07 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhccccc-------CCChhhHHh
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAY-------GGSHEAFLE 1075 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y-------~GS~EaFAE 1075 (2031)
+..|..+|+.+..++.+|+|..||++. ..++++|+.+|++||||+||+.++..+.+ . .-..+..
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~--------~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~-~~~~~~~ 75 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPP--------RRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQI-VQEDPAD 75 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCch--------hcCCCChhhhcCCCCChHHHHHHHHcccccccccccc-ccccccc
Confidence 677888888888888999999999873 46789999999999999999999987633 2 2233566
Q ss_pred hHHHHHHhhhhhcC
Q 000150 1076 DVREVWHHICTAYS 1089 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~ 1089 (2031)
++...|.++..++.
T Consensus 76 ~~~~~~~~~~~~~~ 89 (114)
T cd05494 76 KQIDDEGRRSPSNI 89 (114)
T ss_pred cccccccccCcccc
Confidence 66677777666553
No 52
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.77 E-value=1.1e-05 Score=93.06 Aligned_cols=47 Identities=34% Similarity=0.935 Sum_probs=40.3
Q ss_pred cccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~~ 1205 (2031)
.+|. |. ....++|+-||. |+ .+||+.|++ |...|+|.||||.|....
T Consensus 220 ~yC~-Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 220 TYCI-CN-QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEEE-ec-ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 4663 33 457899999998 99 999999999 999999999999998763
No 53
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.76 E-value=6.1e-06 Score=110.82 Aligned_cols=50 Identities=50% Similarity=1.252 Sum_probs=48.1
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..|++|.+..+...|++||.|..+||++|+.|.+..+|.|+|+||.|...
T Consensus 1109 ~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 57999999999999999999999999999999999999999999999977
No 54
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=97.75 E-value=5.1e-05 Score=70.07 Aligned_cols=58 Identities=36% Similarity=0.622 Sum_probs=50.1
Q ss_pred hhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCcCccccCCCCccccccccccchhhhhhhHHHHHHHhhccccc
Q 000150 658 ELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEEMESLREAAHVRLASNTS 737 (2031)
Q Consensus 658 ~l~gd~~q~we~l~rf~eilgl~~p~s~~ele~el~~~~~~~~~~~~~~~vs~~~~~~~~~~e~~~~~e~~~~~~a~~t~ 737 (2031)
+.+||.|+|||||..|+++|+|+. +|++++|+.|.+.. +
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~-ftlddf~~AL~~~~---~------------------------------------- 40 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSP-FTLDDFEQALLCND---P------------------------------------- 40 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCc-CCHHHHHHHHcCCC---c-------------------------------------
Confidence 579999999999999999999998 69999999998832 0
Q ss_pred cCcccchhhhhHHHHHHHHHHHH
Q 000150 738 SGHANVGLANVLCSLLILLLGEL 760 (2031)
Q Consensus 738 ~~~~gv~l~~~h~~ll~~l~~el 760 (2031)
. ..|.++|++||+.++++.
T Consensus 41 ---~-~ll~ei~~~LL~~l~~~~ 59 (61)
T PF02791_consen 41 ---S-GLLAEIHCALLKALLADE 59 (61)
T ss_pred ---c-hhHHHHHHHHHHHHHhcc
Confidence 0 178999999999998764
No 55
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=98.48 Aligned_cols=51 Identities=45% Similarity=1.177 Sum_probs=45.8
Q ss_pred cccc---ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCC
Q 000150 1152 WDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202 (2031)
Q Consensus 1152 wedd---~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi 1202 (2031)
|.|. +|..|+...++.++++|+.||..||.||..|+++.||.|.|+|+.|.
T Consensus 63 WrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred cccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 6554 56677777789999999999999999999999999999999999995
No 56
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=97.52 E-value=0.00017 Score=67.23 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=33.3
Q ss_pred hhhhhhHHHHHHHHHHhHhhcCCCCCCC--HHHHHHHHcc
Q 000150 657 IELIGDVIQSWELLWRFSEVLGLEEPLS--FKELEEELRN 694 (2031)
Q Consensus 657 ~~l~gd~~q~we~l~rf~eilgl~~p~s--~~ele~el~~ 694 (2031)
.+.+||+|||||||..|+++|||.+ ++ ++++++.|.+
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~-f~~~l~~f~~Al~~ 39 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSP-FRATLEDFIAALKC 39 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHHhc
Confidence 3689999999999999999999876 88 9999988876
No 57
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.51 E-value=5.7e-05 Score=95.86 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=74.6
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhh
Q 000150 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2031)
Q Consensus 1007 r~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~t 1086 (2031)
..+|..+-.+..+|+|.+||+. .++++|+.+|.+||||.|+..++..+.|. ....|.+|+..+|.||.-
T Consensus 612 ~~il~~l~~h~~awPf~~Pv~~----------~e~pdyy~~I~~pmDl~tM~~~l~~~~y~-~~~~f~ad~~~vf~ncr~ 680 (720)
T KOG1472|consen 612 QNILDQLQNHGDAWPFLKPVNK----------KEVPDYYDVIKHPMDLRTMQNRLKDNQYT-EVELFMADVVRVFANCRM 680 (720)
T ss_pred HhHHhhhhcCCccCCccCcccc----------ccCCcHHHHhcccccHHHHhhhccccchh-hHHHHHHHHHHHHhhhhc
Confidence 4577778899999999999987 45789999999999999999999999999 677799999999999999
Q ss_pred hcCCCchHHHHHHHhhhh
Q 000150 1087 AYSDQSDLLQLAGKLCQN 1104 (2031)
Q Consensus 1087 YN~dgSEVveLAeKLSQi 1104 (2031)
||+....-...|..|..-
T Consensus 681 yn~~~~~y~k~~~~le~~ 698 (720)
T KOG1472|consen 681 YNGSDTQYYKCAQALEKF 698 (720)
T ss_pred cCCccchheecccchhhh
Confidence 999876655555555433
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.30 E-value=8.5e-05 Score=94.40 Aligned_cols=49 Identities=41% Similarity=1.101 Sum_probs=44.4
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCc
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c 1206 (2031)
..|++|+ +.+.+|+||.|+..||.+|++||+..+|.++|.|+.|.+...
T Consensus 48 e~c~ic~---~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 48 EACRICA---DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhc---CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3699997 789999999999999999999999999999999999966544
No 59
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.16 E-value=0.00012 Score=88.75 Aligned_cols=48 Identities=44% Similarity=1.021 Sum_probs=43.9
Q ss_pred ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCC----ccCCcCCC
Q 000150 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN----WYCPPCLS 1203 (2031)
Q Consensus 1156 ~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGD----WyCPsCi~ 1203 (2031)
.|.+|.+..+...++.||+|..-||+-||.|||+.+|+.. |.|..|-.
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 6999998888889999999999999999999999999874 99999943
No 60
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.11 E-value=0.00037 Score=72.66 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=38.9
Q ss_pred cccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCC
Q 000150 1048 VSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQ 1091 (2031)
Q Consensus 1048 IkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dg 1091 (2031)
.=-||||.||..||.+|+|. .++.|.+||+++|.||..||++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~-tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYA-TPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eEeccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHhCCHH
Confidence 34589999999999999999 78899999999999999999753
No 61
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.79 E-value=0.00067 Score=89.45 Aligned_cols=50 Identities=30% Similarity=0.873 Sum_probs=43.2
Q ss_pred cccccccccCCCC--CCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d--~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|..... ...+|+||.|+..+|++|.+ ..-+|+|.|.|..|...
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccC
Confidence 4568999976543 47899999999999999999 66899999999999866
No 62
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.72 E-value=0.0013 Score=83.05 Aligned_cols=52 Identities=31% Similarity=0.868 Sum_probs=45.1
Q ss_pred cccccccccCCC--CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCc
Q 000150 1153 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2031)
Q Consensus 1153 edd~CkVCgk~~--d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c 1206 (2031)
++..|-+|...+ ...+|++||.|...-|+.|.+ +.++|+|.|.|..|.-+.+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg~~ 323 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALGIE 323 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhccccCC
Confidence 456899997653 467999999999999999999 8999999999999987653
No 63
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=96.69 E-value=0.00074 Score=65.13 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=35.0
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVSN 199 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~~ 199 (2031)
..||+.+ ++-+ +..+++|++|.|++|.|+.||+.||+...+
T Consensus 12 p~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~ 58 (77)
T PF01429_consen 12 PDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENPS 58 (77)
T ss_dssp TTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS-
T ss_pred CCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCCC
Confidence 7899988 3444 789999999999999999999999999874
No 64
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=96.66 E-value=0.0011 Score=64.58 Aligned_cols=74 Identities=28% Similarity=0.477 Sum_probs=46.1
Q ss_pred CcccceEEeccCchhHHHHHHHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccchHhhhhcCCCCccc
Q 000150 459 DDIGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNI 538 (2031)
Q Consensus 459 d~IgEf~vE~~SssS~W~~vs~~~~~ac~~~~k~~g~~~f~c~h~~~~~~~~~~~~~~~~~~~~~~sl~kfc~~~g~~~i 538 (2031)
+|-.++.++|.|...+|++|-+++-.+...- + + ....+...+||
T Consensus 11 ~d~p~~~~~g~s~~~~W~~i~~~v~~~r~~~----~----------------~-------------~~~~~~~isG~--- 54 (86)
T PF05965_consen 11 EDDPGEVFEGSSPTEAWSEILERVNEARKQS----G----------------L-------------LKLPPNSISGP--- 54 (86)
T ss_dssp TT-GGG-EEESSHHHHHHHHHHHHHHHHT----------------------------------------TT----HH---
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhc----c----------------c-------------cccCCCCCCHh---
Confidence 3456799999999999999998887744321 1 0 00111122233
Q ss_pred CcccccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCcccccccccccc
Q 000150 539 PHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLD 591 (2031)
Q Consensus 539 p~~i~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~ie~lp~~~~cs~y~~l~ 591 (2031)
+-|||...-|+.+||+|||++.|++|+|=-
T Consensus 55 -----------------------~~FGls~p~V~~lie~Lp~a~~c~~Y~f~~ 84 (86)
T PF05965_consen 55 -----------------------EMFGLSNPAVQRLIESLPGADKCSNYKFRY 84 (86)
T ss_dssp -----------------------HHHSTTSHHHHHHHTTSTTGGG-TT-----
T ss_pred -----------------------HhcCCCCHHHHHHHHhCCCcchhhcCCccc
Confidence 569999999999999999999999997743
No 65
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=96.59 E-value=0.0029 Score=62.44 Aligned_cols=73 Identities=30% Similarity=0.520 Sum_probs=56.0
Q ss_pred ceEEeccCchhHHHHHHHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccchHhhhhcCCCCcccCccc
Q 000150 463 EFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEATESSDSLSKFCCLSGPVNIPHLI 542 (2031)
Q Consensus 463 Ef~vE~~SssS~W~~vs~~~~~ac~~~~k~~g~~~f~c~h~~~~~~~~~~~~~~~~~~~~~~sl~kfc~~~g~~~ip~~i 542 (2031)
++.++|.|...+|++|=+++-++.++. |-+.. .... -+||
T Consensus 11 ~~~~~~~S~~~~W~~vl~~v~~~r~~~----~~~~~-----------------------~~~~------isG~------- 50 (86)
T smart00542 11 DEVFKGESPEKCWEMVLERVQEARIVA----RLLQL-----------------------LPEG------VSGE------- 50 (86)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHHHc----ccCCC-----------------------CCCC------CCcH-------
Confidence 689999999999999999998877432 21111 0000 1244
Q ss_pred ccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCccccccccccccccC
Q 000150 543 RSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRVRVCAEYTFLDKRR 594 (2031)
Q Consensus 543 ~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~ie~lp~~~~cs~y~~l~~r~ 594 (2031)
|-|||--..|+-+||+|||++.|.+|.|--+|.
T Consensus 51 -------------------~mFGls~p~V~~lie~Lpga~~C~~Y~~~~~~~ 83 (86)
T smart00542 51 -------------------DMFGLSSPAVVKLIEQLPGVHQCTNYWFRYHRS 83 (86)
T ss_pred -------------------HHhCCCcHHHHHHHHhCCCchhhhhhhhccCCC
Confidence 679999999999999999999999999976654
No 66
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.54 E-value=0.00097 Score=76.51 Aligned_cols=44 Identities=34% Similarity=0.994 Sum_probs=36.7
Q ss_pred ccccccCCCCCCCeEeec--CCC-CCCcccccCCCCCCCCCCCccCCcCCC
Q 000150 1156 VCKVCGIDKDDDNVLLCD--TCD-SGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1156 ~CkVCgk~~d~geLLLCD--~CD-saYHl~CL~PPL~eVPeGDWyCPsCi~ 1203 (2031)
+| -|++ ..-++|+-|| .|. -+||+-|++ |.+.|+|.|||+.|..
T Consensus 223 YC-fCqq-vSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 223 YC-FCQQ-VSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred EE-Eecc-cccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 56 4543 3578999999 488 589999999 9999999999999974
No 67
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.99 E-value=0.0076 Score=80.05 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
.+-++.+|..+...+....|..|||. .-++||.++|+.||||.|+..++.+|.|. ..+.|-+|+.++-.
T Consensus 567 ~kLl~~~l~~lq~kD~~gif~~pvd~----------~e~pdy~~iik~pmd~~t~~~kl~s~~y~-tle~ieed~~l~~~ 635 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDSYGIFAEPVDP----------SELPDYIDIIKKPMDFFTMRLKLESGAYS-TLEPIEEDVNLIVS 635 (1051)
T ss_pred HHHHHHHHHHhhcccccCceeeccCh----------hhcccHHHHhcCccchhhhhhhccccchh-hhhHHHHhHhHhHh
Confidence 57888999999999999999999987 33789999999999999999999999999 67779999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
||..||..+...+..|..+.+-....+.+.-
T Consensus 636 nc~~yn~~dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 636 NCMEYNAKDTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred HHHHhhccCeehHhhhHHHHhhhhhHHHhcc
Confidence 9999999988888888888876666665543
No 68
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.89 E-value=0.003 Score=77.68 Aligned_cols=49 Identities=33% Similarity=0.787 Sum_probs=39.6
Q ss_pred cccccc--CCCCCCCeEeecCCCCCCcccccCCCCCCC----CCCCccCCcCCCC
Q 000150 1156 VCKVCG--IDKDDDNVLLCDTCDSGYHTYCLTPPLTRV----PEGNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCg--k~~d~geLLLCD~CDsaYHl~CL~PPL~eV----PeGDWyCPsCi~~ 1204 (2031)
.|.+|+ ......+||.|+.|..+||+.|..|+.+.. |...|||..|..+
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 477775 344566999999999999999999987554 4557999999877
No 69
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=95.76 E-value=0.004 Score=76.12 Aligned_cols=50 Identities=28% Similarity=0.868 Sum_probs=42.7
Q ss_pred cccccccccCCC--CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~--d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
-|+.|.+|...+ +...+++||+|+-.-|..|.+ +.-+|+|.|+|..|..+
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~ 243 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhccc
Confidence 467899997543 346789999999999999999 67999999999999866
No 70
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=95.46 E-value=0.0052 Score=59.94 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=34.2
Q ss_pred ccccccC-----CCcCceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIPRTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
..||..+ ++-.+..+++|++|.|++|+|+.||+.||+-.+
T Consensus 8 p~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~~ 52 (77)
T cd01396 8 PPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKNG 52 (77)
T ss_pred CCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhCC
Confidence 5799988 442389999999999999999999999998753
No 71
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.44 E-value=0.058 Score=71.44 Aligned_cols=110 Identities=35% Similarity=0.504 Sum_probs=78.2
Q ss_pred CCCCCCCccc---cCChhhhhhHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHccCcCccccCCCCccccccccccchhhh
Q 000150 644 YFPPGKPLSS---KLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTLRSSSTSTVAQEIGQAFIAEE 720 (2031)
Q Consensus 644 ~~p~g~~~~~---~~p~~l~gd~~q~we~l~rf~eilgl~~p~s~~ele~el~~~~~~~~~~~~~~~vs~~~~~~~~~~e 720 (2031)
+||.-=|=|+ -||.+-|=|+|-|.|+|.+|+-.|-|. ||.||.+=--|+.
T Consensus 173 vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~Lris-PF~feDFcaAL~~-------------------------- 225 (1414)
T KOG1473|consen 173 VPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRIS-PFRFEDFCAALIS-------------------------- 225 (1414)
T ss_pred CCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeC-CccHHHHHHHHHh--------------------------
Confidence 5555555443 599999999999999999999999986 6999987555543
Q ss_pred hhhHHHHHHHhhccccccCcccchhhhhHHHHHHHHHHHHhhhhhhccCCCCCCcchhhhhhcccccccchhhhhccCCc
Q 000150 721 MESLREAAHVRLASNTSSGHANVGLANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDL 800 (2031)
Q Consensus 721 ~~~~~e~~~~~~a~~t~~~~~gv~l~~~h~~ll~~l~~el~~kva~~~dpn~d~~e~~~rrgrk~~~d~~~~~k~~k~~~ 800 (2031)
+ +.| -.|+++|.+|||-|++|+..-= ..|-..++| |.=+ ++.
T Consensus 226 --------------~--~~s--sLlaeVHvaLLrA~lr~eD~~~-----Thfs~~d~K-------dsvn--------I~l 267 (1414)
T KOG1473|consen 226 --------------H--EQS--SLLAEVHVALLRALLREEDRLS-----THFSPLDSK-------DSVN--------IDL 267 (1414)
T ss_pred --------------c--Cch--hHHHHHHHHHHHHHhhhhhhcc-----cccCccccc-------ccee--------eee
Confidence 1 222 3799999999999999986432 223333332 1111 223
Q ss_pred cccCcCChHHHHHHhhhe
Q 000150 801 LPVNVLTWPELARRYLLT 818 (2031)
Q Consensus 801 lp~n~~twpelarry~l~ 818 (2031)
-=|..|||||+.|-|+-+
T Consensus 268 ~liD~lTWPevLrqY~ea 285 (1414)
T KOG1473|consen 268 YLIDTLTWPEVLRQYFEA 285 (1414)
T ss_pred ehhccccHHHHHHHHHHh
Confidence 346789999999999865
No 72
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.24 E-value=0.0078 Score=75.93 Aligned_cols=47 Identities=32% Similarity=0.928 Sum_probs=39.8
Q ss_pred ccccccCCC--CCCCeEeec--CCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1156 VCKVCGIDK--DDDNVLLCD--TCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCgk~~--d~geLLLCD--~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
=|.||.... .+..|+.|| .|.-+.|+.|++ +.+||.|.|||..|...
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQ 57 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhh
Confidence 488896433 367899999 599999999999 89999999999999654
No 73
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=95.07 E-value=0.008 Score=56.01 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.2
Q ss_pred ccccccC-----CCcCceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIPRTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
..||+.+ .+-....+++|++|.|++|+|+.||+.||.-++
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKTG 51 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhCC
Confidence 6799888 231378999999999999999999999998763
No 74
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=94.29 E-value=0.014 Score=74.85 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=69.9
Q ss_pred HhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCch
Q 000150 1014 AAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSD 1093 (2031)
Q Consensus 1014 lss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSE 1093 (2031)
..+..+|+|..||+...|+ ++.|+.+|.+|||.+||..+|.+ .|........+|...+|.||+.++...-+
T Consensus 5 ~~~~~~~~f~~~v~~v~l~--------~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~ 75 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALN--------LPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDD 75 (640)
T ss_pred ccccccccccCccchhhcc--------chhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccc
Confidence 3556778898888875554 77899999999999999999999 55546666788888999999999998888
Q ss_pred HHHHHHHhhhhhHh
Q 000150 1094 LLQLAGKLCQNFEV 1107 (2031)
Q Consensus 1094 VveLAeKLSQiFES 1107 (2031)
|..++..+...|..
T Consensus 76 v~~~~~~~~~~~~~ 89 (640)
T KOG1474|consen 76 VVRMKQSLEKLFPK 89 (640)
T ss_pred hhhccccchhhccc
Confidence 99888888776643
No 75
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=93.99 E-value=0.049 Score=73.18 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=66.1
Q ss_pred HHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhc
Q 000150 1009 VLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAY 1088 (2031)
Q Consensus 1009 ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN 1088 (2031)
++..|..-+.+|+|++||+... +++|..+|++||||.+|........|. +.+.|..||++++.|+..||
T Consensus 1390 ~vs~~~~ipes~~f~~~v~~k~----------~~~yy~kik~pmdl~~i~~n~~~~~y~-s~~e~l~dv~~i~~n~~~~n 1458 (1563)
T KOG0008|consen 1390 IVSQMKEIPESWPFHEPVNKKR----------VPDYYKKIKNPMDLETILKNIPPHKYD-SRSEFLDDVNLIYVNSVEYN 1458 (1563)
T ss_pred HHHHHHhcchhcccccccchhh----------chHHHHHhcChhhHHHHhhcCCccccc-cHHHHhhhhHhhcccceeec
Confidence 3344557788999999998844 568999999999999999999999999 45779999999999999999
Q ss_pred CCCchHHHHHHH
Q 000150 1089 SDQSDLLQLAGK 1100 (2031)
Q Consensus 1089 ~dgSEVveLAeK 1100 (2031)
+..+.-..-|.+
T Consensus 1459 g~e~~y~~k~~k 1470 (1563)
T KOG0008|consen 1459 GAESAYTKKARK 1470 (1563)
T ss_pred CccccccHHHHH
Confidence 876544333333
No 76
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=93.93 E-value=0.021 Score=55.78 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.7
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
..||+-+ .+.+ +...++|++|.|+.|+|+.||+.||+-+.
T Consensus 9 p~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~ 54 (77)
T smart00391 9 PCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHKNG 54 (77)
T ss_pred CCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHhCC
Confidence 5789776 2223 78999999999999999999999999775
No 77
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=93.15 E-value=0.1 Score=70.40 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=77.0
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhh
Q 000150 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2031)
Q Consensus 1007 r~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~t 1086 (2031)
..|.++|.+..+..+|.+||+... +.+|+.||.+||||.|++..+....|. .-+.|++|+.+++.|-..
T Consensus 1267 ~~i~n~~~~~~~t~~f~~Pv~~k~----------v~dyy~vi~~P~~lq~~kk~v~kr~y~-~r~~fle~~~~~~~ns~~ 1335 (1563)
T KOG0008|consen 1267 ETIINQARSSPNTYPFPTPVNAKE----------VKDYYRVITPPMDLQTQKKLVRKRLYE-SREHFLEELPLIVSNSTK 1335 (1563)
T ss_pred HHHHHHHhcCCCCcCCCCccchhh----------ccchhhccCCCcchHHHHHHHHHHHHH-HHHHHHHHhHHHhhchhh
Confidence 467789999999999999987733 568999999999999999999999998 566699999999999999
Q ss_pred hcCCCchHHHHHHHh-hhhhHhHHHH
Q 000150 1087 AYSDQSDLLQLAGKL-CQNFEVLYKK 1111 (2031)
Q Consensus 1087 YN~dgSEVveLAeKL-SQiFESrYkK 1111 (2031)
||++.+....-+..+ +..|+.+-.+
T Consensus 1336 yng~~~~~t~~~q~mls~~~~~~~ek 1361 (1563)
T KOG0008|consen 1336 YNGPLASLTRQQQSMLSLCFEKLKEK 1361 (1563)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhchh
Confidence 999988776666543 3355544433
No 78
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.98 E-value=0.019 Score=49.08 Aligned_cols=34 Identities=35% Similarity=1.091 Sum_probs=20.8
Q ss_pred CCeEeecCCCCCCcccccCCCCCCCCCC-CccCCcCC
Q 000150 1167 DNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCL 1202 (2031)
Q Consensus 1167 geLLLCD~CDsaYHl~CL~PPL~eVPeG-DWyCPsCi 1202 (2031)
+.|+.|+.|.-..|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 5789999999999999999 7788887 89998883
No 79
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=91.16 E-value=0.18 Score=45.00 Aligned_cols=44 Identities=34% Similarity=0.707 Sum_probs=36.2
Q ss_pred hhhccccCceeecchhhHHHHHHHhhhhhcchhhhHHhhhhccc
Q 000150 1241 LAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCAS 1284 (2031)
Q Consensus 1241 Laid~~EKEFW~LS~~ERi~LLKyL~De~LSsALIReeLdq~~d 1284 (2031)
....+....||.+++.+|+.+|++||+..+++..+|++++++.+
T Consensus 5 ~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e 48 (50)
T PF15612_consen 5 LAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREE 48 (50)
T ss_dssp G-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT
T ss_pred hhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 44566788999999999999999999999999999999987654
No 80
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=89.73 E-value=0.29 Score=63.69 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
+.+...|. ....+++|.++|+. ..-+.|+.||+-|||+.|+..++..+-|. +.+.|+.|+.+
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~----------~~a~~y~~i~k~pmdl~t~~~k~~~~~y~-~~~~fv~d~~~ 353 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSK----------EDAPNYYQIIKAPMDLSTELKKLKSGPYC-SKEEFVNDLML 353 (720)
T ss_pred HHHHHHhc-------ccccccccccCCCh----------hhCcchHHhhhcchHHHHHHHHhcccccc-chhHHHHHHHH
Confidence 44455555 37888999999977 34678999999999999999999999999 77889999999
Q ss_pred HHHhhhhhcCCCch
Q 000150 1080 VWHHICTAYSDQSD 1093 (2031)
Q Consensus 1080 VWsNc~tYN~dgSE 1093 (2031)
+|+||..||.+...
T Consensus 354 ~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 354 IWRNCEKYNSEESH 367 (720)
T ss_pred HHhcchhhccccch
Confidence 99999999987543
No 81
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=88.75 E-value=0.49 Score=60.93 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHH
Q 000150 1039 EGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1039 qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYk 1110 (2031)
...+.|+.+|..||-|.-|+.|+..+.|. ..+-|..|+.+++.|+..|+..++.+..++..|...|.+.-.
T Consensus 86 ~~~p~yy~~i~~pisl~~ik~kv~k~~y~-~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 86 KEFPEYYYVIQQPISLDQIKRKVKKGRYK-RLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred ccCCCcceeecCcccHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 34568999999999999999999999999 778899999999999999999999999999999888776543
No 82
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=86.10 E-value=0.31 Score=47.95 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.2
Q ss_pred ccccccC---CCc-C-ceeeEEEEecCCceecccccccccccc
Q 000150 159 ERVWASG---NSI-P-RTSYQNYYAVNGNRFDSMFDVPCHLGL 196 (2031)
Q Consensus 159 e~gw~v~---~~~-~-~~~~~~y~~pdG~~f~s~~~va~~Lgl 196 (2031)
+.||+=+ .+. + ..-.++|+||-|+.|+|+.||+.||+=
T Consensus 7 ~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~ 49 (73)
T cd01397 7 ELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSK 49 (73)
T ss_pred CCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHh
Confidence 5688877 121 3 667899999999999999999999984
No 83
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=84.19 E-value=1.2 Score=40.84 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=31.0
Q ss_pred ceEecchHHHHHHHHhh-ccCCchhHHHHHHHHHHh
Q 000150 1608 WFSYQSDTEIEELIQWL-SDSDPRDKELAESILRWT 1642 (2031)
Q Consensus 1608 w~~yesd~EI~eLi~WL-~d~dpre~eL~esil~w~ 1642 (2031)
|..|.+.+||++|+.|| .----||+.|++.+..-.
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~ 36 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHR 36 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHh
Confidence 88999999999999999 777789999999887544
No 84
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.02 E-value=0.47 Score=56.05 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=61.2
Q ss_pred cccccccCC------CCCCCeEeecCCCCCCcccccCCCC---CCCCCCCccCCcC-CCCCcCCCccCCCCccccccccc
Q 000150 1155 GVCKVCGID------KDDDNVLLCDTCDSGYHTYCLTPPL---TRVPEGNWYCPPC-LSGNCKNKYMSQVPHVSSRIPKR 1224 (2031)
Q Consensus 1155 d~CkVCgk~------~d~geLLLCD~CDsaYHl~CL~PPL---~eVPeGDWyCPsC-i~~~c~~~~~sQE~~~~sq~erK 1224 (2031)
..|+.|.+. ...+.+++|..|...||.+|+.-+. ..+-...|.|..| .+.+|.++....+..-+..|.+-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG 338 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRG 338 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccCC
Confidence 468888643 2457899999999999999998553 2344558999999 57778766555433323444443
Q ss_pred cccchhhhhhhhhhhhhhhccccCceeecchhhHHH
Q 000150 1225 RHQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIF 1260 (2031)
Q Consensus 1225 ~~~GEf~~~f~ee~~hLaid~~EKEFW~LS~~ERi~ 1260 (2031)
+ |.||-.+. .+...-|-|...|++.
T Consensus 339 ~------HT~CVGL~-----~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 339 P------HTLCVGLQ-----DLPRGEWICDMRCREA 363 (381)
T ss_pred C------Cccccccc-----cccCccchhhhHHHHh
Confidence 3 34443332 2344568887666655
No 85
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=80.03 E-value=2.3 Score=57.15 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhH
Q 000150 1004 KQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2031)
Q Consensus 1004 KRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDV 1077 (2031)
+.|.+|+........ +..|.+.- -..-+++|+.+|++|+++..|+.++..+.|. +...--.|+
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~----------s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 1095 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLP----------SRKEYPDYYEIIKKPVAIDKIKKRIENHKYN-SLKELEKDF 1095 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCc----------ccccccchHHHhcchhhHHHHhhhccccccc-hHHHHHHHH
Confidence 568888877773333 22333222 2244679999999999999999999999999 666678899
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1078 RLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
-.+|.|+..||..++.|..-|..|...|+..+.+..
T Consensus 1096 ~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1096 MLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred HhhcchhhhhccCCceechhHHHHHHHHhhhHHHHh
Confidence 999999999999999999999999988888777554
No 86
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=78.16 E-value=0.94 Score=55.58 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=76.9
Q ss_pred HHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhh
Q 000150 1007 RKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICT 1086 (2031)
Q Consensus 1007 r~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~t 1086 (2031)
.++|+.+.+.+.-..|--||-+.+ -++|.++|++|||+.|+..+.+-++|. ....|-.|-+++-.|...
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m----------ap~y~~iis~Pmd~~t~r~kidd~~yl-~L~~m~~d~kl~~~na~~ 93 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM----------APNYLEIISEPMDRITKRSKIDDTRYL-VLSQMEFDRKLPDGNATL 93 (418)
T ss_pred HHHHHhccccChhhhhccccchhh----------ccchHhhhhcccccccccccCCCccce-echhhhhhhcccccchhh
Confidence 356677777777777877775522 257999999999999999999999999 455589999999999999
Q ss_pred hcCCCchHHHHHHHhhhhhHhHHHHHHHhHh
Q 000150 1087 AYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 1117 (2031)
Q Consensus 1087 YN~dgSEVveLAeKLSQiFESrYkKqVLdyV 1117 (2031)
||.....+...|..|+...-..+....+.+.
T Consensus 94 yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f~ 124 (418)
T KOG1828|consen 94 YNLHPTVPIVAAKRLCPVRLGMTQERLLSFV 124 (418)
T ss_pred hhcCCccccccccccchhhcchhhHHHHHhh
Confidence 9998777777777777765555555555444
No 87
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=76.97 E-value=1.6 Score=54.70 Aligned_cols=50 Identities=34% Similarity=0.816 Sum_probs=39.5
Q ss_pred cccccccCC--CCCCCeEeecCCCCCCcccccCCC-CCCCCCC-------CccCCcCCCC
Q 000150 1155 GVCKVCGID--KDDDNVLLCDTCDSGYHTYCLTPP-LTRVPEG-------NWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~--~d~geLLLCD~CDsaYHl~CL~PP-L~eVPeG-------DWyCPsCi~~ 1204 (2031)
.+|.||-.. .+.+++|.||.|+-..|-.|++-- -..||.| .|||-.|.++
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 379999654 478899999999999999998742 1345655 5999999877
No 88
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.44 E-value=2.4 Score=48.00 Aligned_cols=40 Identities=30% Similarity=0.850 Sum_probs=31.7
Q ss_pred ccccccCCC-----CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1156 VCKVCGIDK-----DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCgk~~-----d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.|.+|...+ +.+....|..|.+.||..|... =.||.|...
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 699997653 3457889999999999999882 139999754
No 89
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=74.65 E-value=1.3 Score=57.27 Aligned_cols=49 Identities=33% Similarity=0.874 Sum_probs=36.6
Q ss_pred ccccccccCC--CCCCCeEeecCCCCCCcccccCCCCCCC--CCCCccCCcCCC
Q 000150 1154 EGVCKVCGID--KDDDNVLLCDTCDSGYHTYCLTPPLTRV--PEGNWYCPPCLS 1203 (2031)
Q Consensus 1154 dd~CkVCgk~--~d~geLLLCD~CDsaYHl~CL~PPL~eV--PeGDWyCPsCi~ 1203 (2031)
+..|.+|+.. ...+.|+-|..|...||.+|+.--+... -.| |.||.|+.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~g-WrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGG-WRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCC-cccCCcee
Confidence 3567788654 3577899999999999999988444332 344 99999963
No 90
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=71.57 E-value=2 Score=48.16 Aligned_cols=49 Identities=33% Similarity=0.852 Sum_probs=37.3
Q ss_pred ccccc---cCCCCCCCeEeecCCCCCCcccccCCCC------CCCCCCC--ccCCcCCCC
Q 000150 1156 VCKVC---GIDKDDDNVLLCDTCDSGYHTYCLTPPL------TRVPEGN--WYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVC---gk~~d~geLLLCD~CDsaYHl~CL~PPL------~eVPeGD--WyCPsCi~~ 1204 (2031)
+|.+| +.+..-+.|+.|-+|-.+||..||+|-- ++|-.++ -.|..|+.-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 37777 4555678999999999999999999864 3455544 568888743
No 91
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.98 E-value=3.4 Score=39.06 Aligned_cols=32 Identities=34% Similarity=0.884 Sum_probs=27.8
Q ss_pred cccccccCCC-CCCCeEeecCCCCCCcccccCC
Q 000150 1155 GVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTP 1186 (2031)
Q Consensus 1155 d~CkVCgk~~-d~geLLLCD~CDsaYHl~CL~P 1186 (2031)
..|.+|+..- +.++++.|..|...||-.|+..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4699999765 4889999999999999999873
No 92
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=57.00 E-value=7.4 Score=48.25 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHHHHHHHhhh
Q 000150 1041 LLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQ 1103 (2031)
Q Consensus 1041 LpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVveLAeKLSQ 1103 (2031)
.++|.-+|++|+|++|++-+..+.+|. + -.|..|-.++-.|+.+|+.+..-..+||.++..
T Consensus 238 aP~YSm~Ik~~~~~~Tygdk~~andy~-S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 238 APGYSMTITEVEPPGTYGDKSSANDYE-S-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred cccccccccccCCCcchhhhhhhhhhh-h-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 467877899999999999999999998 5 559999999999999999998888888888765
No 93
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=53.14 E-value=4.6 Score=38.78 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=25.7
Q ss_pred eeeEEEEecCCceecccccccccccccccc
Q 000150 171 TSYQNYYAVNGNRFDSMFDVPCHLGLVSNY 200 (2031)
Q Consensus 171 ~~~~~y~~pdG~~f~s~~~va~~Lgl~~~~ 200 (2031)
...++|.||-|+.+++|.||.+||=.+.++
T Consensus 23 k~~V~Y~aPCGr~Lr~~~EV~~YL~~t~~~ 52 (60)
T cd01395 23 KKHVIYKAPCGRSLRNMSEVHRYLRETCSF 52 (60)
T ss_pred ccceEEECCcchhhhcHHHHHHHHHhcccc
Confidence 445899999999999999999999877433
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=52.04 E-value=2 Score=41.46 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=20.0
Q ss_pred cccccccCCCC-C--CCeEeec--CCCCCCcccccCCCCCCCCCC-------CccCCcCCCC
Q 000150 1155 GVCKVCGIDKD-D--DNVLLCD--TCDSGYHTYCLTPPLTRVPEG-------NWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d-~--geLLLCD--~CDsaYHl~CL~PPL~eVPeG-------DWyCPsCi~~ 1204 (2031)
..|.+|..... . ...+.|+ .|...||+.||.-=+...+.+ .+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 46899976532 2 3458898 999999999985322221111 3569999764
No 95
>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]
Probab=51.88 E-value=16 Score=43.70 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=34.2
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
-.||-.+ -+.+ +-++++|.+|-|+.|+|-.++|.|||..-
T Consensus 20 p~GW~~~~~~r~~~~~~g~~dv~~~sp~g~~frsk~~l~~~~~~~~ 65 (272)
T KOG4161|consen 20 PPGWTREEVQRSSGLSAGKSDVYYISPSGKKFRSKPQLARYLGKVG 65 (272)
T ss_pred CCCcchhhhcccCCCcccccceEEeCCcccccccccHHHHHhcccc
Confidence 4689777 1233 89999999999999999999999999985
No 96
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=47.50 E-value=3.5 Score=54.25 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=43.0
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCC-CCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTP-PLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~P-PL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|..|. .....++|+.|-+.||..|+.| |++..+.|-|-|+.|-.+
T Consensus 505 ~d~~~~~~~---~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 505 HDISCEEQI---KKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKK 554 (696)
T ss_pred chhhHHHHH---HhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence 445788887 4567899999999999999999 999999999999999755
No 97
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=43.69 E-value=25 Score=38.48 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=36.1
Q ss_pred CCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHH
Q 000150 1051 PLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2031)
Q Consensus 1051 PMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVv 1095 (2031)
|.||..|+++|.+|.|. +...|.+||-.+....+..-+...++.
T Consensus 59 p~dL~~V~kkl~~G~Y~-sv~~F~~DvvkIiqa~l~~e~~~pe~~ 102 (131)
T cd05493 59 PLDLEAVGKKLEAGFYT-SVLDFSDDIVKIIQAALNSEGGQPEIK 102 (131)
T ss_pred cccHHHHHHHHhcccee-hHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 78999999999999999 677799999999888776555455443
No 98
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.91 E-value=16 Score=47.75 Aligned_cols=47 Identities=32% Similarity=0.842 Sum_probs=37.7
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCC-CCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR-VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~e-VPeGDWyCPsCi~~ 1204 (2031)
..|.+|. ..+.+++|+.|+..+|..|-++++.. .+.+.|.|..|..+
T Consensus 48 ts~~~~~---~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICK---SGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhcchhh---hcCCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 4577775 67899999999999999999999862 33347999888764
No 99
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=33.17 E-value=40 Score=30.14 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=15.8
Q ss_pred hhhhhCCCCCCceEEEe
Q 000150 1544 RKELLGRDSAGRLYWAF 1560 (2031)
Q Consensus 1544 Rre~Lg~Ds~GrlYW~~ 1560 (2031)
|.+.||+|--|.-||.|
T Consensus 1 R~~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWF 17 (38)
T ss_pred CcccccccCCCceEEEE
Confidence 56789999999999999
No 100
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=32.48 E-value=20 Score=36.78 Aligned_cols=46 Identities=24% Similarity=0.553 Sum_probs=29.6
Q ss_pred cccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1157 CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1157 CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
|..|....+.-.++++. |...||+.|+.--|..- ...=.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 33344334444555555 99999999987666553 223489999864
No 101
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=36 Score=42.28 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=37.9
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCc
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c 1206 (2031)
+.|.+|..+-..++.|-==-|.-.||..|.+|=|.+- .=+||-|.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 4799998766666666557899999999999877654 237999987643
No 102
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=31.89 E-value=1.2e+02 Score=30.15 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=22.3
Q ss_pred ccccccccCCCCCCCeEeecCCCCCCcccccC
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLT 1185 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~ 1185 (2031)
...|.+|++.-..+..... -|+..||..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEe-CCCeEEeccccc
Confidence 4579999987666544433 456999999975
No 103
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.57 E-value=27 Score=41.52 Aligned_cols=45 Identities=29% Similarity=0.733 Sum_probs=22.2
Q ss_pred CCCCccccccccccCCC-------C---CCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1148 PKAPWDEGVCKVCGIDK-------D---DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1148 Pr~pwedd~CkVCgk~~-------d---~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+...|..++|.|||... . +...|.|..|...||..= ..||.|-..
T Consensus 166 ~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R------------~~Cp~Cg~~ 220 (290)
T PF04216_consen 166 PPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR------------IKCPYCGNT 220 (290)
T ss_dssp S---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T------------TS-TTT---
T ss_pred ccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC------------CCCcCCCCC
Confidence 34578889999999752 2 348899999999998542 469999765
No 104
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.56 E-value=45 Score=42.48 Aligned_cols=29 Identities=24% Similarity=0.577 Sum_probs=22.7
Q ss_pred ccccccCCC---CCCCeEeecCCCCCCccccc
Q 000150 1156 VCKVCGIDK---DDDNVLLCDTCDSGYHTYCL 1184 (2031)
Q Consensus 1156 ~CkVCgk~~---d~geLLLCD~CDsaYHl~CL 1184 (2031)
.|-+|++.+ ++-..+-||.|.-+-|+.|.
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh
Confidence 456777754 45567899999999999994
No 105
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=28.26 E-value=31 Score=31.91 Aligned_cols=17 Identities=35% Similarity=1.185 Sum_probs=9.9
Q ss_pred CCCCCCCCCccCCcCCCC
Q 000150 1187 PLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1187 PL~eVPeGDWyCPsCi~~ 1204 (2031)
+...+|+ +|.||.|.+.
T Consensus 27 ~F~~Lp~-~w~CP~C~a~ 43 (47)
T PF00301_consen 27 PFEDLPD-DWVCPVCGAP 43 (47)
T ss_dssp -GGGS-T-T-B-TTTSSB
T ss_pred CHHHCCC-CCcCcCCCCc
Confidence 3456666 7999999876
No 106
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=27.49 E-value=25 Score=28.07 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=21.0
Q ss_pred ccccccccccccccccccccCCcc
Q 000150 1731 RFHCRRCHLSFSARNELEEHNDAK 1754 (2031)
Q Consensus 1731 r~hc~~ch~t~~~~~e~e~hn~gk 1754 (2031)
++.|..|.+.|.+...|+.|-.+|
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCCcccCCCCcCCHHHHHHHHccC
Confidence 357999999999999999998765
No 107
>COG1773 Rubredoxin [Energy production and conversion]
Probab=27.26 E-value=40 Score=32.33 Aligned_cols=41 Identities=32% Similarity=0.806 Sum_probs=24.3
Q ss_pred cccccccCCCCCCC-eEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDN-VLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~ge-LLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..|++||---++++ --.|+.|+ .-+..++|. +|.||.|-..
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~p--------gT~fedlPd-~w~CP~Cg~~ 45 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAP--------GTPFEDLPD-DWVCPECGVG 45 (55)
T ss_pred eEecCCceEeccccCCccCCCCC--------CCchhhCCC-ccCCCCCCCC
Confidence 35888874332221 11233333 344678887 7999999764
No 108
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=26.26 E-value=5 Score=34.86 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=28.0
Q ss_pred ccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCC
Q 000150 1156 VCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202 (2031)
Q Consensus 1156 ~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi 1202 (2031)
.|.+|...-. ++.++... |.-.||..|+..-+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 5889976654 34444444 99999999988655442 3788874
No 109
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.71 E-value=72 Score=26.20 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000150 1523 EIAVLQDSIAGLESQQLA 1540 (2031)
Q Consensus 1523 ~is~LQdsi~~~esQl~~ 1540 (2031)
||..|++-|+.||+||..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 677788888889999975
No 110
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.41 E-value=56 Score=40.07 Aligned_cols=42 Identities=26% Similarity=0.558 Sum_probs=31.5
Q ss_pred CccccccccccCCC----------CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1151 PWDEGVCKVCGIDK----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwedd~CkVCgk~~----------d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.|....|.|||... ++...|.|..|...||+.= =.||.|-..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 235 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR------------VKCSNCEQS 235 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 35678999999752 3557899999999999653 258888643
No 111
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=24.84 E-value=60 Score=39.74 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=31.4
Q ss_pred CccccccccccCCC-----------CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1151 PWDEGVCKVCGIDK-----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwedd~CkVCgk~~-----------d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.|+..+|.|||... ++...|.|..|...||+.= =.||.|-..
T Consensus 181 ~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 233 (305)
T TIGR01562 181 RESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR------------VKCSHCEES 233 (305)
T ss_pred cCCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 35667999998742 3457899999999999653 258888654
No 112
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=25 Score=42.31 Aligned_cols=59 Identities=24% Similarity=0.506 Sum_probs=35.3
Q ss_pred ccCCCCCCccccccccccCCCCCCC-------eEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1144 ASEIPKAPWDEGVCKVCGIDKDDDN-------VLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1144 ~s~lPr~pwedd~CkVCgk~~d~ge-------LLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+.+|...-++..|.+|++.-+.+. -+.==.|.-.||-+|.+-= -+-...=.||.|..+
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKek 279 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHH
Confidence 4467777778899999997543222 1122268899999997610 000002367777654
No 113
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=23.52 E-value=16 Score=28.20 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.0
Q ss_pred ccccccccccccccccccCCcc
Q 000150 1733 HCRRCHLSFSARNELEEHNDAK 1754 (2031)
Q Consensus 1733 hc~~ch~t~~~~~e~e~hn~gk 1754 (2031)
.|..|.++|.+...|..|-.||
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCcCCHHHHHHHHCcC
Confidence 6999999999999999997765
No 114
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=23.24 E-value=44 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.813 Sum_probs=24.7
Q ss_pred cccccccCCCCCCCeEeecC--CCCCCcccccC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLT 1185 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~--CDsaYHl~CL~ 1185 (2031)
..|.+|++. .+-.+.|.. |...||..|..
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 479999854 678999987 99999999965
No 115
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=21.37 E-value=50 Score=40.86 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=36.5
Q ss_pred ccCCCCCC-CeEeecCCCCCCcccc--cCCCCCCCCCC-CccCCcCCCC
Q 000150 1160 CGIDKDDD-NVLLCDTCDSGYHTYC--LTPPLTRVPEG-NWYCPPCLSG 1204 (2031)
Q Consensus 1160 Cgk~~d~g-eLLLCD~CDsaYHl~C--L~PPL~eVPeG-DWyCPsCi~~ 1204 (2031)
|.+..+++ .++.|+.|..+||..| ++.+-.+.|.- .|+|..|...
T Consensus 65 ~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 65 CYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEA 113 (345)
T ss_pred cccccCchhhhhccccccccccccccccCchhhcCCccccccccccchh
Confidence 44444444 7899999999999999 99888887765 7999999876
No 116
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.58 E-value=63 Score=30.27 Aligned_cols=17 Identities=41% Similarity=1.345 Sum_probs=12.9
Q ss_pred CCCCCCCCCccCCcCCCC
Q 000150 1187 PLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1187 PL~eVPeGDWyCPsCi~~ 1204 (2031)
+..++|+ +|.||.|...
T Consensus 27 ~f~~Lp~-~w~CP~C~a~ 43 (50)
T cd00730 27 PFEDLPD-DWVCPVCGAG 43 (50)
T ss_pred CHhHCCC-CCCCCCCCCc
Confidence 3456776 8999999765
No 117
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=20.01 E-value=25 Score=42.43 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=33.3
Q ss_pred ccccchhHHHHHHHHHHhhccCcccccHHHHHHHHHhCCcc
Q 000150 541 LIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPRV 581 (2031)
Q Consensus 541 ~i~~~~~~~~~~~~l~~wl~qdrfgld~efvqe~ie~lp~~ 581 (2031)
++--..-||++|.---+|-.| ||+-+|-|||+|||||+.
T Consensus 206 l~l~tsHLEStr~h~P~r~~q--F~~~~~k~~EaIe~lPnA 244 (349)
T KOG2756|consen 206 LCLMTSHLESTRGHAPERMNQ--FKMVLKKMQEAIESLPNA 244 (349)
T ss_pred EEEEeccccCCCCCChHHHHH--HHHHHHHHHHHHHhCCCc
Confidence 344467789999999999877 889999999999999986
Done!