Query 000150
Match_columns 2031
No_of_seqs 335 out of 1196
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wzo_A Transforming growth fac 99.8 2.5E-19 8.4E-24 185.0 7.3 64 293-357 4-73 (146)
2 2ouo_A HUNK1 protein, bromodom 99.7 6.9E-18 2.3E-22 171.1 8.1 121 976-1112 4-127 (130)
3 3mb3_A PH-interacting protein; 99.6 3.1E-16 1.1E-20 159.2 10.7 107 999-1116 19-126 (135)
4 3g0l_A Hwalp4, bromodomain adj 99.6 4E-16 1.4E-20 154.9 10.7 102 1001-1113 13-114 (117)
5 3nxb_A CAT eye syndrome critic 99.6 1.9E-16 6.5E-21 156.9 8.2 101 1000-1111 15-115 (116)
6 3d7c_A General control of amin 99.6 8.9E-16 3E-20 151.6 10.1 103 999-1112 5-107 (112)
7 2yyn_A Transcription intermedi 99.6 8.5E-16 2.9E-20 156.7 10.2 103 999-1113 18-122 (135)
8 3jvl_A Bromodomain-containing 99.6 2.6E-16 8.7E-21 156.8 6.2 105 999-1113 8-115 (120)
9 4alg_A Bromodomain-containing 99.6 5.6E-16 1.9E-20 161.3 9.0 106 999-1113 30-135 (154)
10 2oss_A HUNK1 protein, bromodom 99.6 1.6E-15 5.3E-20 153.4 9.9 104 999-1111 19-122 (127)
11 3q2e_A Bromodomain and WD repe 99.6 2.1E-15 7.1E-20 151.3 10.5 106 1000-1116 9-115 (123)
12 2dat_A Possible global transcr 99.6 1.6E-15 5.6E-20 152.2 8.9 103 999-1112 11-119 (123)
13 3p1f_A CREB-binding protein; s 99.6 2.3E-15 8E-20 149.8 9.9 108 999-1115 9-117 (119)
14 3fkm_X Signaling protein; brom 99.6 2.3E-15 7.7E-20 158.4 10.3 109 998-1115 18-126 (166)
15 2grc_A Probable global transcr 99.6 3.4E-15 1.1E-19 151.2 10.4 106 999-1115 9-121 (129)
16 2i7k_A Bromodomain-containing 99.6 2.6E-15 8.7E-20 150.3 9.0 104 1001-1115 8-111 (117)
17 1e6i_A Transcriptional activat 99.6 2.4E-15 8.3E-20 150.7 8.5 99 1003-1112 15-113 (121)
18 3iu5_A Protein polybromo-1; PB 99.6 5.2E-15 1.8E-19 146.9 8.6 101 1002-1113 6-112 (116)
19 2d9e_A Peregrin; four-helix bu 99.6 8.3E-15 2.8E-19 147.0 10.0 104 1000-1114 6-109 (121)
20 3o36_A Transcription intermedi 99.5 1.7E-14 5.9E-19 152.6 11.1 104 997-1112 77-182 (184)
21 3ljw_A Protein polybromo-1; al 99.5 1.6E-14 5.5E-19 144.3 9.6 107 997-1114 4-116 (120)
22 3mqm_A Probable histone-lysine 99.5 1.8E-14 6E-19 144.9 9.1 107 999-1116 7-119 (126)
23 3mb4_A Protein polybromo-1; PB 99.5 2.2E-14 7.4E-19 144.1 9.3 99 1002-1111 16-120 (124)
24 3rcw_A Bromodomain-containing 99.5 2.3E-14 7.9E-19 145.6 9.2 103 1002-1115 14-116 (135)
25 3hme_A Bromodomain-containing 99.5 2.9E-14 9.9E-19 143.3 8.8 103 1002-1115 14-116 (123)
26 3k2j_A Protein polybromo-1; PB 99.5 4.4E-14 1.5E-18 143.6 9.4 105 1000-1115 16-126 (130)
27 2ri7_A Nucleosome-remodeling f 99.5 2.7E-14 9.2E-19 149.3 7.7 101 999-1110 70-170 (174)
28 3uv4_A Second bromodomain of h 99.4 1.5E-13 5.2E-18 143.9 10.2 106 998-1115 23-133 (158)
29 2ro1_A Transcription intermedi 99.4 1.8E-13 6E-18 146.6 10.0 98 1001-1114 76-178 (189)
30 3u5n_A E3 ubiquitin-protein li 99.4 3.6E-13 1.2E-17 145.2 9.7 103 999-1113 79-201 (207)
31 3tlp_A Protein polybromo-1; PB 99.4 3.5E-13 1.2E-17 139.0 8.8 100 1003-1113 26-132 (150)
32 3dai_A ATPase family AAA domai 99.4 5.6E-13 1.9E-17 135.0 9.9 98 1002-1110 11-112 (130)
33 3uv5_A Transcription initiatio 99.4 9E-13 3.1E-17 146.9 9.7 102 1001-1113 14-115 (265)
34 2dkw_A Hypothetical protein KI 99.3 1.9E-12 6.4E-17 132.1 9.6 96 1000-1111 11-110 (131)
35 3aad_A Transcription initiatio 99.3 1.3E-12 4.4E-17 147.8 7.6 100 1001-1111 47-146 (292)
36 2e6r_A Jumonji/ARID domain-con 99.2 1.7E-12 5.8E-17 125.8 2.6 55 1153-1207 15-69 (92)
37 3uv5_A Transcription initiatio 99.2 9.8E-12 3.3E-16 138.6 8.6 92 1013-1115 149-240 (265)
38 1f62_A Transcription factor WS 99.2 3.4E-12 1.1E-16 110.8 3.6 49 1156-1204 2-50 (51)
39 3aad_A Transcription initiatio 99.2 1.9E-11 6.5E-16 138.3 8.7 91 1013-1114 182-272 (292)
40 1xwh_A Autoimmune regulator; P 99.2 7.2E-12 2.5E-16 114.5 4.0 52 1152-1206 6-57 (66)
41 1mm2_A MI2-beta; PHD, zinc fin 99.2 1.4E-11 4.8E-16 111.3 5.4 50 1152-1204 7-56 (61)
42 2r0y_A Chromatin structure-rem 99.2 1.5E-11 5.2E-16 140.5 6.6 90 1016-1116 178-267 (311)
43 2r10_A Chromatin structure-rem 99.2 1.9E-11 6.5E-16 141.9 7.0 91 1016-1117 228-318 (361)
44 2lri_C Autoimmune regulator; Z 99.2 1.3E-11 4.4E-16 113.7 4.2 50 1152-1204 10-59 (66)
45 1fp0_A KAP-1 corepressor; PHD 99.2 3.1E-11 1.1E-15 116.9 6.9 50 1152-1204 23-72 (88)
46 2e6s_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 114.2 5.4 54 1150-1203 20-76 (77)
47 3asl_A E3 ubiquitin-protein li 99.1 2.5E-11 8.7E-16 112.6 3.9 55 1150-1204 12-69 (70)
48 2yql_A PHD finger protein 21A; 99.1 2.2E-11 7.4E-16 108.1 3.1 48 1153-1203 8-55 (56)
49 2l5u_A Chromodomain-helicase-D 99.1 3.7E-11 1.3E-15 108.6 3.0 49 1153-1204 10-58 (61)
50 2yt5_A Metal-response element- 99.1 2.5E-11 8.5E-16 110.0 1.8 53 1152-1204 4-61 (66)
51 2puy_A PHD finger protein 21A; 99.1 4.2E-11 1.4E-15 107.4 3.2 49 1153-1204 4-52 (60)
52 3shb_A E3 ubiquitin-protein li 99.1 7.3E-11 2.5E-15 111.7 4.4 54 1150-1203 20-76 (77)
53 2r10_A Chromatin structure-rem 99.0 2.5E-10 8.5E-15 132.6 8.0 97 1004-1112 81-179 (361)
54 1wev_A Riken cDNA 1110020M19; 99.0 7E-11 2.4E-15 113.7 2.6 51 1154-1204 16-72 (88)
55 3u5n_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 125.1 4.3 51 1151-1204 4-54 (207)
56 3o36_A Transcription intermedi 99.0 2.2E-10 7.6E-15 121.4 4.9 49 1153-1204 3-51 (184)
57 3ask_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 126.8 4.6 54 1151-1204 169-225 (226)
58 2kwj_A Zinc finger protein DPF 99.0 1.4E-10 4.8E-15 115.6 2.5 56 1149-1204 50-108 (114)
59 2r0y_A Chromatin structure-rem 99.0 6E-10 2.1E-14 127.5 7.9 99 1002-1112 29-129 (311)
60 3v43_A Histone acetyltransfera 98.9 4E-10 1.4E-14 112.0 4.3 57 1147-1203 51-111 (112)
61 2ku3_A Bromodomain-containing 98.9 2.3E-10 8E-15 106.7 2.4 52 1151-1204 13-66 (71)
62 2ro1_A Transcription intermedi 98.9 4.7E-10 1.6E-14 120.3 4.5 48 1154-1204 2-49 (189)
63 2ysm_A Myeloid/lymphoid or mix 98.9 5.6E-10 1.9E-14 110.1 4.0 59 1146-1204 43-104 (111)
64 2l43_A N-teminal domain from h 98.9 3.7E-10 1.3E-14 108.8 1.3 50 1153-1204 24-75 (88)
65 2k16_A Transcription initiatio 98.8 1.2E-09 4E-14 101.5 2.2 52 1153-1204 17-68 (75)
66 4gne_A Histone-lysine N-methyl 98.7 1.3E-08 4.4E-13 101.7 4.9 53 1152-1209 13-67 (107)
67 1wen_A Inhibitor of growth fam 98.5 7.3E-08 2.5E-12 90.0 6.2 54 1147-1204 9-65 (71)
68 2lv9_A Histone-lysine N-methyl 98.5 6E-08 2E-12 95.0 5.5 48 1155-1204 29-76 (98)
69 2ysm_A Myeloid/lymphoid or mix 98.5 1.4E-07 4.9E-12 93.1 6.8 78 1152-1229 5-83 (111)
70 1weu_A Inhibitor of growth fam 98.4 2.8E-07 9.6E-12 90.0 6.1 51 1150-1204 32-85 (91)
71 2vnf_A ING 4, P29ING4, inhibit 98.3 8.7E-08 3E-12 86.7 1.2 48 1153-1204 9-59 (60)
72 3c6w_A P28ING5, inhibitor of g 98.3 1.1E-07 3.9E-12 85.9 1.3 48 1153-1204 8-58 (59)
73 2lbm_A Transcriptional regulat 98.3 1.7E-07 5.8E-12 97.7 1.2 51 1151-1204 60-117 (142)
74 3iu6_A Protein polybromo-1; PB 98.2 5.4E-06 1.9E-10 87.0 11.9 107 1000-1115 6-112 (147)
75 2g6q_A Inhibitor of growth pro 98.2 2.7E-07 9.4E-12 84.2 1.3 48 1153-1204 10-60 (62)
76 3lqh_A Histone-lysine N-methyl 98.2 3.8E-06 1.3E-10 90.7 9.4 94 1001-1116 75-168 (183)
77 2jmi_A Protein YNG1, ING1 homo 98.2 7.9E-07 2.7E-11 86.7 3.3 47 1153-1203 25-75 (90)
78 3ql9_A Transcriptional regulat 97.9 7.9E-07 2.7E-11 91.6 -1.2 52 1150-1204 53-111 (129)
79 2kwj_A Zinc finger protein DPF 97.9 3.1E-06 1.1E-10 84.6 1.7 75 1155-1229 2-87 (114)
80 3v43_A Histone acetyltransfera 97.8 5E-06 1.7E-10 82.8 1.5 75 1155-1229 6-91 (112)
81 1x4i_A Inhibitor of growth pro 97.8 6.2E-06 2.1E-10 76.9 2.0 46 1155-1204 7-55 (70)
82 3o70_A PHD finger protein 13; 97.7 1.3E-05 4.4E-10 74.4 3.1 50 1153-1204 18-67 (68)
83 1we9_A PHD finger family prote 97.6 2.3E-05 7.7E-10 70.9 2.6 51 1154-1204 6-58 (64)
84 3o7a_A PHD finger protein 13 v 97.5 3.7E-05 1.2E-09 67.6 2.4 50 1152-1203 2-51 (52)
85 1wem_A Death associated transc 97.4 2.4E-05 8.1E-10 73.1 -0.0 49 1155-1204 17-70 (76)
86 1wee_A PHD finger family prote 97.4 6.1E-05 2.1E-09 69.9 2.5 49 1155-1204 17-66 (72)
87 2ri7_A Nucleosome-remodeling f 97.3 2.1E-05 7.3E-10 82.5 -1.3 51 1153-1204 7-59 (174)
88 2rsd_A E3 SUMO-protein ligase 97.3 9.5E-05 3.2E-09 68.2 2.8 48 1154-1203 10-64 (68)
89 2xb1_A Pygopus homolog 2, B-ce 97.2 5.8E-05 2E-09 75.0 0.8 48 1155-1204 4-61 (105)
90 1wew_A DNA-binding family prot 97.2 0.00011 3.8E-09 69.3 2.5 48 1154-1204 16-72 (78)
91 2vpb_A Hpygo1, pygopus homolog 97.2 4.6E-05 1.6E-09 70.3 -0.7 46 1155-1202 9-64 (65)
92 1wep_A PHF8; structural genomi 97.1 9.3E-05 3.2E-09 69.8 0.4 49 1155-1204 13-63 (79)
93 2kgg_A Histone demethylase jar 96.9 0.00017 5.9E-09 63.4 0.3 47 1156-1202 4-52 (52)
94 3vxv_A Methyl-CPG-binding doma 96.7 0.00047 1.6E-08 64.7 1.4 41 159-199 7-53 (69)
95 1wil_A KIAA1045 protein; ring 96.5 0.00052 1.8E-08 66.8 0.7 50 1153-1203 14-75 (89)
96 3lqh_A Histone-lysine N-methyl 96.4 0.00087 3E-08 72.5 1.8 49 1156-1204 4-63 (183)
97 3kqi_A GRC5, PHD finger protei 96.4 0.0006 2E-08 63.9 0.3 48 1156-1204 12-61 (75)
98 1d9n_A Methyl-CPG-binding prot 96.4 0.00087 3E-08 63.8 1.3 38 159-196 12-55 (75)
99 2ky8_A Methyl-CPG-binding doma 96.3 0.0012 4E-08 62.5 1.4 39 159-197 14-58 (72)
100 3pur_A Lysine-specific demethy 96.1 0.0019 6.5E-08 79.0 2.7 41 1165-1205 54-95 (528)
101 3kv5_D JMJC domain-containing 95.9 0.001 3.4E-08 80.9 -0.9 48 1155-1205 38-89 (488)
102 3c2i_A Methyl-CPG-binding prot 95.9 0.0021 7.3E-08 63.8 1.3 40 159-198 25-70 (97)
103 1ub1_A MECP2, attachment regio 95.6 0.0078 2.7E-07 62.7 4.2 40 159-198 39-84 (133)
104 4bbq_A Lysine-specific demethy 95.0 0.0099 3.4E-07 59.0 2.7 39 1166-1204 72-114 (117)
105 3kv4_A PHD finger protein 8; e 94.0 0.0051 1.7E-07 74.2 -2.4 49 1156-1205 7-57 (447)
106 4gne_A Histone-lysine N-methyl 93.2 0.05 1.7E-06 54.8 3.5 51 1144-1198 46-98 (107)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.6 0.078 2.7E-06 52.1 0.5 38 1168-1205 1-45 (140)
108 3rsn_A SET1/ASH2 histone methy 74.2 2.4 8.1E-05 46.3 4.3 46 1159-1204 9-59 (177)
109 4bbq_A Lysine-specific demethy 69.5 1.1 3.7E-05 44.5 0.4 40 1154-1207 7-46 (117)
110 3a1b_A DNA (cytosine-5)-methyl 56.8 2.9 9.8E-05 45.1 0.7 49 1153-1204 78-134 (159)
111 2d8s_A Cellular modulator of i 54.0 10 0.00035 36.0 3.9 51 1152-1204 13-67 (80)
112 2pv0_B DNA (cytosine-5)-methyl 52.2 2.4 8.3E-05 50.8 -0.7 49 1153-1204 92-148 (386)
113 1iym_A EL5; ring-H2 finger, ub 52.1 8.3 0.00029 32.7 2.7 47 1154-1204 5-52 (55)
114 2ect_A Ring finger protein 126 42.8 24 0.00083 31.9 4.4 49 1153-1205 14-62 (78)
115 2kiz_A E3 ubiquitin-protein li 42.2 5.1 0.00017 35.6 -0.1 48 1153-1204 13-60 (69)
116 1x4j_A Ring finger protein 38; 41.6 7.4 0.00025 35.2 0.9 48 1153-1204 22-69 (75)
117 1v87_A Deltex protein 2; ring- 39.4 5.9 0.0002 38.4 -0.2 35 1171-1205 57-92 (114)
118 1vyx_A ORF K3, K3RING; zinc-bi 37.8 4.1 0.00014 36.9 -1.4 49 1153-1204 5-56 (60)
119 3k1l_B Fancl; UBC, ring, RWD, 36.8 13 0.00045 44.5 2.1 50 1155-1204 309-370 (381)
120 1dx8_A Rubredoxin; electron tr 36.6 21 0.00073 33.8 3.1 20 1184-1204 30-49 (70)
121 2kn9_A Rubredoxin; metalloprot 35.1 22 0.00076 34.7 3.0 21 1183-1204 49-69 (81)
122 2ecm_A Ring finger and CHY zin 33.7 10 0.00034 32.0 0.4 48 1153-1204 4-52 (55)
123 2l0b_A E3 ubiquitin-protein li 33.3 9.9 0.00034 36.0 0.3 48 1153-1204 39-86 (91)
124 1e8j_A Rubredoxin; iron-sulfur 32.1 37 0.0013 30.5 3.7 20 1184-1204 26-45 (52)
125 2ct0_A Non-SMC element 1 homol 30.8 25 0.00085 33.4 2.5 48 1153-1204 14-61 (74)
126 6rxn_A Rubredoxin; electron tr 29.6 27 0.00092 30.9 2.4 17 1187-1204 23-39 (46)
127 1weq_A PHD finger protein 7; s 29.1 30 0.001 34.1 2.8 35 1167-1204 44-79 (85)
128 2ecl_A Ring-box protein 2; RNF 29.1 20 0.0007 33.4 1.6 47 1154-1204 15-73 (81)
129 2v3b_B Rubredoxin 2, rubredoxi 26.5 32 0.0011 31.3 2.3 19 1185-1204 27-45 (55)
130 4rxn_A Rubredoxin; electron tr 26.2 34 0.0012 31.2 2.5 17 1187-1204 29-45 (54)
131 2ep4_A Ring finger protein 24; 26.0 22 0.00074 31.9 1.2 48 1153-1204 14-61 (74)
132 3nw0_A Non-structural maintena 25.8 15 0.00052 41.2 0.2 46 1155-1204 181-226 (238)
133 1s24_A Rubredoxin 2; electron 25.7 28 0.00095 34.5 1.9 21 1183-1204 57-77 (87)
134 1yk4_A Rubredoxin, RD; electro 25.6 33 0.0011 30.9 2.2 19 1185-1204 26-44 (52)
135 2ep0_A Zinc finger protein 28 24.8 19 0.00065 28.6 0.5 31 1708-1751 2-32 (46)
136 2egp_A Tripartite motif-contai 22.9 65 0.0022 28.9 3.7 49 1153-1204 11-62 (79)
137 4a0k_B E3 ubiquitin-protein li 22.7 20 0.0007 36.5 0.4 28 1173-1204 82-109 (117)
138 2fiy_A Protein FDHE homolog; F 22.2 37 0.0012 39.7 2.4 41 1152-1204 180-231 (309)
139 2m0d_A Zinc finger and BTB dom 21.8 17 0.00057 25.5 -0.3 19 1733-1751 5-23 (30)
140 2kvf_A Zinc finger and BTB dom 21.7 17 0.00057 25.6 -0.4 19 1733-1751 5-23 (28)
141 2ecj_A Tripartite motif-contai 21.4 45 0.0015 28.3 2.2 45 1153-1201 14-58 (58)
142 2kvh_A Zinc finger and BTB dom 21.2 18 0.0006 25.4 -0.3 18 1733-1750 5-22 (27)
143 2lq6_A Bromodomain-containing 20.5 45 0.0015 32.5 2.3 38 1146-1185 10-49 (87)
144 2ytt_A Zinc finger protein 473 20.3 24 0.00083 28.1 0.3 30 1709-1751 3-32 (46)
145 2el6_A Zinc finger protein 268 20.2 27 0.00093 27.8 0.6 31 1708-1751 2-32 (46)
No 1
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=184.99 Aligned_cols=64 Identities=33% Similarity=0.695 Sum_probs=58.8
Q ss_pred CcceeecCeEEEEecccc-CCCCCCCCcceeeccccc-----ccccCCCccEEEEEeccCCCCCceeEEEE
Q 000150 293 GLPVEFEDFCLLAVGEVD-PRPSYHNSSQIWPVGYKS-----SWHDKVTGSLFVCDVSDGGDFGPLFKVKR 357 (2031)
Q Consensus 293 ~~p~~~~~~~v~slG~i~-~rp~yh~~~~i~PvGyks-----~~~d~~~~slf~cev~dgg~~GP~Fkv~r 357 (2031)
=||+.+|+++|+|||+|. +||.||++++||||||++ |..|+..++.|+|+|+|||+ ||+|+|+.
T Consensus 4 ~lP~~~g~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~-~P~F~V~~ 73 (146)
T 2wzo_A 4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGV-QPQFEIVP 73 (146)
T ss_dssp CCCEEETTEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSS-SEEEEEEE
T ss_pred eecEEECCEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCC-cceeEEEe
Confidence 389999999999999997 799999999999999999 44589999999999999996 89999874
No 2
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.71 E-value=6.9e-18 Score=171.06 Aligned_cols=121 Identities=24% Similarity=0.370 Sum_probs=95.1
Q ss_pred cccCCCCCCCCcccCCCcccccCchHHHHHHHHHHHHHHhcc---hhhhhhhcccccCcCCCCCCCCCCCCcccccccCC
Q 000150 976 DVCGEDQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAAD---EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPL 1052 (2031)
Q Consensus 976 ~~~ge~~~~~P~KkrK~~~~vSlsDlImKRCr~ILkeLlss~---~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPM 1052 (2031)
++.++..+..|.|+++ .++. +++|..||+.|+..+ .+++|.+||++.. .++++|+.+|++||
T Consensus 4 ~~p~s~~~~~~~k~~~------~~~~-l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~--------~~~pdY~~iIk~Pm 68 (130)
T 2ouo_A 4 DVPDSQQHPAPEKSSK------VSEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVEA--------LGLHDYCDIIKHPM 68 (130)
T ss_dssp ---------------C------HHHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCTTS--------TTCTTHHHHCSSCC
T ss_pred CCCCCCCCCCCCCCcc------cHHH-HHHHHHHHHHHHhCCcchhHHHhcCCCChhh--------ccCCcHHHHcCCCC
Confidence 5566666667777665 3355 799999999999765 4899999998743 46889999999999
Q ss_pred ChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1053 DFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1053 DLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
||+||+.|+..|.|. +.+.|.+||++||+||..||+.++.|+.+|..|...|+..|.++
T Consensus 69 DL~tI~~kl~~~~Y~-s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 69 DMSTIKSKLEAREYR-DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp CHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999 78889999999999999999999999999999999999988754
No 3
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=159.20 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
.+.+.++|..||+.|..++.+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +.+.|.+||+
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~ 87 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDL----------LEYPDYRDIIDTPMDFATVRETLEAGNYE-SPMELCKDVR 87 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCCh----------hhCCCHHHHhCCCcCHHHHHHHHhCCCCC-CHHHHHHHHH
Confidence 355799999999999999999999999987 35789999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCC-CchHHHHHHHhhhhhHhHHHHHHHhH
Q 000150 1079 EVWHHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1079 LVWsNc~tYN~d-gSEVveLAeKLSQiFESrYkKqVLdy 1116 (2031)
+||.||..||++ ++.|+.+|..|...|+..+.+.+-++
T Consensus 88 li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 88 LIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 89999999999999999999877655
No 4
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.64 E-value=4e-16 Score=154.89 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
..++.|..||+.|..++.+++|.+||+.. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+|+++|
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~li 81 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLK----------LVPGYKKVIKKPMDFSTIREKLSSGQYP-NLETFALDVRLV 81 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChh----------hcCChHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHH
Confidence 34899999999999999999999999872 3789999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
|.||..||++++.++.+|..|...|+..|++.+
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 82 FDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 5
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.64 E-value=1.9e-16 Score=156.94 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
+...++|..||+.+..++.+++|..||++. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+||++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~l 83 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES----------YAPNYYQIIKAPMDISSMEKKLNGGLYC-TKEEFVNDMKT 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh----------hccChHHHcCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 446899999999999999999999999873 4789999999999999999999999998 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
||.||..||++++.++.+|..|...|+..+.|
T Consensus 84 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 84 MFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987753
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.62 E-value=8.9e-16 Score=151.56 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
++.+.+.|..||+.+..++.+++|..||++ .++++|+.+|++||||+||+.|+.+|.|. +.+.|.+|++
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~ 73 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKK----------SEAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQ 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCc----------ccccCHHHHccCCcCHHHHHHHHcCCCCc-CHHHHHHHHH
Confidence 466789999999999999999999999987 25789999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
+||+||..||++++.++.+|..|.+.|+..+++.
T Consensus 74 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 74 RVIANCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999888753
No 7
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=156.71 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcc--cccCCChhhHHhh
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF--GAYGGSHEAFLED 1076 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaa--G~Y~GS~EaFAED 1076 (2031)
+...+++|..||..|..++.+++|..||+. ++++|+.+|++||||+||+.||.. +.|. +.+.|.+|
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~-s~~ef~~D 85 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFVAD 85 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSSSCCCS-SHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc-----------cCCCHHHHcCCCCCHHHHHHHHhccccCCC-CHHHHHHH
Confidence 455589999999999999999999999964 378899999999999999999998 5888 78889999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1077 VREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1077 VRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
|++||+||..||+.++.|+.+|..|...|+.++.+..
T Consensus 86 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 86 FRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998887654
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.62 E-value=2.6e-16 Score=156.85 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHHHHhcch---hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 999 PDVIMKQCRKVLRCAAAADE---ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~---S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
++. +++|..||+.|...+. +|+|.+||++.. .|+++|+.+|++||||+||+.|+..|.|. +.+.|.+
T Consensus 8 ~~~-l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~--------~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~ 77 (120)
T 3jvl_A 8 SEQ-LKCCSGILKEMFAKKHAAYAWPFYKPVDVEA--------LGLHDYCDIIKHPMDMSTIKSKLESREYR-DAQEFGA 77 (120)
T ss_dssp CHH-HHHHHHHHHHHTSGGGHHHHGGGSSCCCHHH--------HTCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhCcCccccchhcCCCCchh--------cCCCCHHHHcCCCCCHHHHHHHHccCCCC-CHHHHHH
Confidence 355 8999999999997776 899999998743 45788999999999999999999999999 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
||++||+||..||++++.++.+|..|...|+..+.+..
T Consensus 78 D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 78 DVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999998877543
No 9
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.62 E-value=5.6e-16 Score=161.31 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
.+.+...|+.||+.|..++.+++|.+||++..+ ++++|+.+|++||||+||+.||..+.|. +.+.|.+||+
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~--------~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~ 100 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL--------GLPDYHKIIKQPMDMGTIKRRLENNYYW-AASECMQDFN 100 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTT--------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhc--------cCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 467677788999999999999999999988543 4788999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
+||.||..||+.++.|+.+|..|...|+..+.+..
T Consensus 101 Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 101 TMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999998777543
No 10
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.60 E-value=1.6e-15 Score=153.39 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
.+.+-..|+.||+.|..++.+++|..||+.. ..++++|+.+|++||||+||+.|+..|.|. +.+.|.+|++
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~--------~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~ 89 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAV--------KLNLPDYYKIIKTPMDMGTIKKRLENNYYW-NAQECIQDFN 89 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTT--------TTTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChh--------hccCccHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 4665677888999999999999999999873 235889999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
+||+||..||+.++.++.+|..|.+.|+..+++
T Consensus 90 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 122 (127)
T 2oss_A 90 TMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122 (127)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887764
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=151.26 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
+.+.++|..||+.+..++.+++|..||++. ++++|+.+|++||||+||+.|+..|.|. +.+.|..|+++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~----------~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~l 77 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLV----------EYPDYRDIIDTPMDFGTVRETLDAGNYD-SPLEFCKDIRL 77 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChh----------hcCCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 457899999999999999999999999873 5789999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCC-CchHHHHHHHhhhhhHhHHHHHHHhH
Q 000150 1080 VWHHICTAYSD-QSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1080 VWsNc~tYN~d-gSEVveLAeKLSQiFESrYkKqVLdy 1116 (2031)
||.||..||++ ++.|+.+|..|...|+..+++.+-.+
T Consensus 78 i~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 78 IFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 89999999999999999999887665
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=152.17 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhh
Q 000150 999 PDVIMKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEA 1072 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~------~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~Ea 1072 (2031)
++.+.++|..||+.++... .+++|.+||+. .++++|+.+|++||||+||+.|+..+.|. +.+.
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~ 79 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLGD 79 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT----------TTSCHHHHHCSSCCCHHHHHHHHTTTCCC-SHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHH
Confidence 4667999999999999765 58999999875 35889999999999999999999999999 7888
Q ss_pred HHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1073 FLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1073 FAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
|.+||++||.||..||++++.++.+|..|.+.|+..+++.
T Consensus 80 f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 80 LEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999887743
No 13
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.59 E-value=2.3e-15 Score=149.77 Aligned_cols=108 Identities=20% Similarity=0.316 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHHh-cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhH
Q 000150 999 PDVIMKQCRKVLRCAAA-ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2031)
Q Consensus 999 sDlImKRCr~ILkeLls-s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDV 1077 (2031)
++.+.+.|..+|..++. .+.+++|..||++..+ ++|+|+.+|++||||+||+.|+..|.|. +.+.|.+||
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~--------~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~ 79 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLL--------GIPDYFDIVKNPMDLSTIKRKLDTGQYQ-EPWQYVDDV 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHH--------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhc--------cCCCHHHHhcCCCCHHHHHHHHhcCCCC-CHHHHHHHH
Confidence 57789999999999997 6699999999998543 3788999999999999999999999999 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1078 RLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
++||+||..||++++.++.+|..|...|+..+.+.+..
T Consensus 80 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 80 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988876543
No 14
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.59 E-value=2.3e-15 Score=158.43 Aligned_cols=109 Identities=12% Similarity=0.177 Sum_probs=97.3
Q ss_pred CchHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhH
Q 000150 998 VPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDV 1077 (2031)
Q Consensus 998 lsDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDV 1077 (2031)
..+...+.|+.||+.|...+.+++|..||++.. .++++|+.+|++||||+||+.||..+.|. +.+.|..||
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~--------~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~-s~~ef~~Dv 88 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKK--------QNCPDYYDVIKNPMSFSCIKTKLKKGQYA-YPSEFVKDV 88 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-------------CCCGGGCCSSCCCHHHHHHHHHHTCCC-SHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--------ccCCCHHHhcCCCCCHHHHHHHHcCCCCC-CHHHHHHHH
Confidence 346678999999999999999999999998743 35789999999999999999999999999 788899999
Q ss_pred HHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1078 REVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1078 RLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
++||.||..||++++.|+.+|..|...|+..+.++.+.
T Consensus 89 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~~ 126 (166)
T 3fkm_X 89 QLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYN 126 (166)
T ss_dssp HHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999886543
No 15
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.58 E-value=3.4e-15 Score=151.16 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHHHHHhcc-------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChh
Q 000150 999 PDVIMKQCRKVLRCAAAAD-------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHE 1071 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~-------~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~E 1071 (2031)
++.+.++|+.||+.++... .+++|..||+. .++++|+.+|++||||+||+.|+..|.|. +.+
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ 77 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR----------KELPEYYELIRKPVDFKKIKERIRNHKYR-SLN 77 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHhcCCCC-CHH
Confidence 5667999999999999664 58999999865 46889999999999999999999999998 788
Q ss_pred hHHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1072 AFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1072 aFAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
.|.+||++||+||..||+.++.++.+|..|...|+..+++....
T Consensus 78 ~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 78 DLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 89999999999999999999999999999999999988876654
No 16
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=150.26 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+-+.|..||+.|...+.+++|..||++ ..+|+|..+|++||||+||+.|+..|.|. +.+.|.+|++++
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~----------~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Li 76 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTD----------FIAPGYSMIIKHPMDFSTMKEKIKNNDYQ-SIEELKDNFKLM 76 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCT----------TTSSSHHHHCSCCCCHHHHHHHHTTTSCC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCc----------cccCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 3578999999999999999999999975 35789999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
|.||..||++++.++.+|..|.+.|+..+..+++.
T Consensus 77 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 77 CTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764
No 17
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.57 E-value=2.4e-15 Score=150.74 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHH
Q 000150 1003 MKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWH 1082 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWs 1082 (2031)
++.|..||+.|..++.+++|.+||+. .++++|+.+|++||||+||+.|+..|.|. +.+.|.+|+++||+
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~li~~ 83 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNK----------EEVPDYYDFIKEPMDLSTMEIKLESNKYQ-KMEDFIYDARLVFN 83 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCCh----------hhCcCHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHH
Confidence 68999999999999999999999986 24789999999999999999999999999 78889999999999
Q ss_pred hhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1083 HICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1083 Nc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
||..||++++.++.+|..|...|+..+.+.
T Consensus 84 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 84 NCRMYNGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999888754
No 18
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.55 E-value=5.2e-15 Score=146.92 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhcc------hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1002 IMKQCRKVLRCAAAAD------EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~------~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
.+++|..|++.+.... .+++|.+||+. .++|+|+.+|++||||+||+.|+..+.|. +.+.|.+
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~ 74 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR----------RNQPDYYEVVSQPIDLMKIQQKLKMEEYD-DVNLLTA 74 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG----------GGCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc----------ccCCCHHHHhCCCCCHHHHHHHHHcCCCC-CHHHHHH
Confidence 3799999999999663 48899998765 45789999999999999999999999998 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
|++++|+||..||++++.++.+|..|.+.|+..+++.+
T Consensus 75 D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 75 DFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888664
No 19
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.3e-15 Score=147.03 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
..+...|+.||+.|..++.+++|..||++. .+++|+.+|++||||+||+.|+..+.|. +.+.|.+|+++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~D~~l 74 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS----------EVPDYLDHIKKPMDFFTMKQNLEAYRYL-NFDDFEEDFNL 74 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc----------ccCCHHHHcCCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 345689999999999999999999999872 4789999999999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHH
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVL 1114 (2031)
||+||..||++++.++.+|..|.+.|+..+.+.-.
T Consensus 75 i~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 75 IVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876544
No 20
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.53 E-value=1.7e-14 Score=152.59 Aligned_cols=104 Identities=20% Similarity=0.322 Sum_probs=94.6
Q ss_pred cCchHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcc--cccCCChhhHH
Q 000150 997 SVPDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF--GAYGGSHEAFL 1074 (2031)
Q Consensus 997 SlsDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaa--G~Y~GS~EaFA 1074 (2031)
.++....++|+.||..|+.++.+++|..||+. .+++|+.+|++||||+||+.|+.. |.|. +.+.|.
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~-s~~ef~ 144 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-----------TVPDYYKIIKNPMDLSTIKKRLQEDYSMYS-KPEDFV 144 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHHSTTCSCC-SHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-----------CCCchhhhcCCCCCHHHHHHHHHhcCCCCC-CHHHHH
Confidence 34456689999999999999999999999964 368899999999999999999988 7888 788899
Q ss_pred hhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1075 EDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1075 EDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
+||++||+|+..||+.++.|+.+|..|...|+..+++.
T Consensus 145 ~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 145 ADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988764
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.53 E-value=1.6e-14 Score=144.32 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=96.5
Q ss_pred cCchHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCCh
Q 000150 997 SVPDVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSH 1070 (2031)
Q Consensus 997 SlsDlImKRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~ 1070 (2031)
+.++.+.+.|+.+++.+..... +++|.+||+. ..+++|+.+|++||||+||+.|+..|.|. +.
T Consensus 4 ~~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~ 72 (120)
T 3ljw_A 4 SSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSK----------VQYPDYYAIIKEPIDLKTIAQRIQNGSYK-SI 72 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHHTCCC-SH
T ss_pred ccHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCc----------ccCCChHHHcCCCCCHHHHHHHHccCCCC-CH
Confidence 3467778899999999997766 8899998765 45889999999999999999999999998 78
Q ss_pred hhHHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHH
Q 000150 1071 EAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2031)
Q Consensus 1071 EaFAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVL 1114 (2031)
+.|..||++||+||..||+.++.++.+|..|...|+..+++...
T Consensus 73 ~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 73 HAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999999999999998887543
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=144.91 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhh
Q 000150 999 PDVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEA 1072 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~Ea 1072 (2031)
++.+.++|+.+++.+..... +++|.+||+. .++|+|+.+|++||||+||+.|+..|.|. +.+.
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~ 75 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPK----------KKNADYYEKISDPLDLITIEKQILTGYYK-TVEA 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCG----------GGCTTHHHHCSSCCCHHHHHHHHHHTCCC-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCc----------ccCCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHH
Confidence 45678899999999996543 7888888876 35889999999999999999999999998 7888
Q ss_pred HHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHhH
Q 000150 1073 FLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1073 FAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLdy 1116 (2031)
|.+|+++||.||..||++++.++.+|..|.+.|+..+.+..-.+
T Consensus 76 f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 76 FDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888765443
No 23
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.51 E-value=2.2e-14 Score=144.11 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHh------cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1002 IMKQCRKVLRCAAA------ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1002 ImKRCr~ILkeLls------s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
+-++|+.||+.+.. ...+++|..||+. .++++|+.+|++||||+||+.|+..+.|. +.+.|.+
T Consensus 16 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~ 84 (124)
T 3mb4_A 16 MQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSR----------SELPDYYLTIKKPMDMEKIRSHMMANKYQ-DIDSMVE 84 (124)
T ss_dssp HHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccCCcccHHhhcCCCc----------cccCCHHHHcCCCCCHHHHHHHHHcCCCC-CHHHHHH
Confidence 46899999999996 4557999999865 45889999999999999999999999998 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
|+++||.||..||++++.++.+|..|.+.|+..+++
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 120 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD 120 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988875
No 24
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=145.56 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+...|+.||+.|..++.+++|..||+.. ++++|+.+|++||||+||+.|+..|.|. +.+.|.+||++||
T Consensus 14 l~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (135)
T 3rcw_A 14 LTVLLRSVLDQLQDKDPARIFAQPVSLK----------EVPDYLDHIKHPMDFATMRKRLEAQGYK-NLHEFEEDFDLII 82 (135)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSSCCCTT----------TCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCChh----------hcCCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Confidence 4789999999999999999999999872 5789999999999999999999999999 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
+||..||++++.++.+|..|...|+..++..-..
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888865443
No 25
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=143.34 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+.+.|..||+.|...+.+++|..||++ ..+++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++|
T Consensus 14 ~~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 82 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDPHGFFAFPVTD----------AIAPGYSMIIKHPMDFGTMKDKIVANEYK-SVTEFKADFKLMC 82 (123)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHhhcCCCCh----------hhccCHHHHCCCCCCHHHHHHHhccCCCC-CHHHHHHHHHHHH
Confidence 368999999999999999999999986 24789999999999999999999999998 7888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
+||..||++++.++.+|..|.+.|+..+.+.-+.
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (123)
T 3hme_A 83 DNAMTYNRPDTVYYKLAKKILHAGFKMMSKERLL 116 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877765443
No 26
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=143.62 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHhcch------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhH
Q 000150 1000 DVIMKQCRKVLRCAAAADE------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAF 1073 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaF 1073 (2031)
+-+.++|..+++.+..... +++|.+||+. .++|+|+.+|++||||+||+.|+..+.|. +.+.|
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~----------~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~-s~~ef 84 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSK----------KKYPDYYQQIKMPISLQQIRTKLKNQEYE-TLDHL 84 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCCh----------hhCccHHHHcCCCCCHHHHHHHHhcCCCC-CHHHH
Confidence 4468999999999995544 8889888865 46889999999999999999999999998 78889
Q ss_pred HhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1074 LEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1074 AEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
.+|+++||.||..||++++.|+.+|..|.+.|+..++++...
T Consensus 85 ~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 85 ECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876643
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.48 E-value=2.7e-14 Score=149.32 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHH
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVR 1078 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVR 1078 (2031)
++...+.|..||+.|..++.+++|..||++ .++++|+.+|++||||+||+.|+.++.|. +.+.|.+||+
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~ 138 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDP----------NDAPDYYGVIKEPMDLATMEERVQRRYYE-KLTEFVADMT 138 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCC-BHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCc----------ccCCchHHHhCCcCCHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 345578999999999999999999999987 25789999999999999999999999999 7888999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHhhhhhHhHHH
Q 000150 1079 EVWHHICTAYSDQSDLLQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1079 LVWsNc~tYN~dgSEVveLAeKLSQiFESrYk 1110 (2031)
+||+||..||++++.++.+|..|...|+..++
T Consensus 139 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~ 170 (174)
T 2ri7_A 139 KIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170 (174)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987665
No 28
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.45 E-value=1.5e-13 Score=143.90 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHHHH-----hcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhh
Q 000150 998 VPDVIMKQCRKVLRCAA-----AADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEA 1072 (2031)
Q Consensus 998 lsDlImKRCr~ILkeLl-----ss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~Ea 1072 (2031)
.++. ...|..||+.++ ..+.+++|..||+. ..+|+|+.+|++||||+||+.|+..+.|. +.+.
T Consensus 23 ~~d~-~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~----------~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~e 90 (158)
T 3uv4_A 23 MDDD-QVAFSFILDNIVTQKMMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRES 90 (158)
T ss_dssp CSHH-HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHH
T ss_pred CCch-HHHHHHHHHHHHHHHHHcCCCchhhcCcCCh----------hhcccHHHHcCCccCHHHHHHHHHcCCCC-CHHH
Confidence 3444 788999998876 46889999999987 24789999999999999999999999999 7888
Q ss_pred HHhhHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1073 FLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1073 FAEDVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
|.+||++||.||..||++++.++.+|..|...|+..+.+....
T Consensus 91 f~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 91 FLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEH 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765443
No 29
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=146.64 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccc--cCCChhHHHhhhccc---ccCCChhhHHh
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVS--RPLDFRTIDLRLAFG---AYGGSHEAFLE 1075 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIk--RPMDLGTIDlRLaaG---~Y~GS~EaFAE 1075 (2031)
..++.|..||..|..++.+|+|.+||++ +|+.+|+ +||||+||+.||..+ .|. +.+.|++
T Consensus 76 ~~~~~c~~iL~~l~~~~~s~pF~~pV~~--------------~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~-s~~eF~~ 140 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEPCRPLHQLATD--------------STFSLDQPGGTLDLTLIRARLQEKLSPPYS-SPQEFAQ 140 (189)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHSCSCC--------------TTCSSSCSSCCCCHHHHHHHHHTSSSSCCS-CHHHHHH
T ss_pred HHHHHHHHHHhhcccCccchhhcCCCCh--------------hhhccccCCCcccHHHHHHHHhcCCCcccC-CHHHHHH
Confidence 3368999999999999999999999974 4888887 799999999999999 898 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVL 1114 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVL 1114 (2031)
||++||+||..||+ ++.++.+|..|.+.|+.++++.+-
T Consensus 141 Dv~Lif~N~~~yN~-~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 141 DVGRMFKQFNKLTE-DKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHHHHHHHHCC-SSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999994 778889999999999999987654
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.41 E-value=3.6e-13 Score=145.23 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcc---cccCCChhhHHh
Q 000150 999 PDVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAF---GAYGGSHEAFLE 1075 (2031)
Q Consensus 999 sDlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaa---G~Y~GS~EaFAE 1075 (2031)
+....++|..||..|+.++.+++|..||+. ++++|+.+|++||||+||+.||.. |.|. +.+.|.+
T Consensus 79 s~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-----------~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~-s~~~f~~ 146 (207)
T 3u5n_A 79 SPVDQRKCERLLLYLYCHELSIEFQEPVPA-----------SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQ-IPDDFVA 146 (207)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-----------TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCS-SHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccchhhhhccCCh-----------hhccHhHHhCCccCHHHHHHHHhcccCCCcC-CHHHHHH
Confidence 345579999999999999999999999954 378999999999999999999997 7888 7888999
Q ss_pred hHHHHHHhhhhhcC-----------------CCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1076 DVREVWHHICTAYS-----------------DQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~-----------------dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
||++||+|+..||+ .+++|..+|..|...|+.++.+..
T Consensus 147 Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 147 DVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999 788888888888888888777543
No 31
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=139.04 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcch-------hhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHh
Q 000150 1003 MKQCRKVLRCAAAADE-------ERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLE 1075 (2031)
Q Consensus 1003 mKRCr~ILkeLlss~~-------S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAE 1075 (2031)
..+|..+|+.++.... +++|..||+. .++++|+.+|++||||+||+.|+..+.|. +.+.|.+
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~ef~~ 94 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSK----------KDYPDYYKIILEPMDLKIIEHNIRNDKYA-GEEGMIE 94 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCch----------hhCcCHHHHhCCCCCHHHHHHHHhcCCCC-CHHHHHH
Confidence 5789999999985544 7788777755 46889999999999999999999999999 7888999
Q ss_pred hHHHHHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1076 DVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1076 DVRLVWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
||++||.||..||+.++.|+.+|..|...|+..+.+..
T Consensus 95 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 95 DMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999998887654
No 32
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.40 E-value=5.6e-13 Score=134.99 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1002 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
+-..|+.++..+..++.+++|..||++ .++|+|+.+|++||||+||+.|+..|.|. +.+.|.+|+++||
T Consensus 11 l~~~l~~il~~l~~~~~~~~F~~pv~~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li~ 79 (130)
T 3dai_A 11 LRIFLRNVTHRLAIDKRFRVFTKPVDP----------DEVPDYVTVIKQPMDLSSVISKIDLHKYL-TVKDYLRDIDLIC 79 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT----------TTCTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHhhcCCCCh----------hhcCCHHHHcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 456788888888899999999999988 24789999999999999999999999998 7888999999999
Q ss_pred HhhhhhcCCCchH----HHHHHHhhhhhHhHHH
Q 000150 1082 HHICTAYSDQSDL----LQLAGKLCQNFEVLYK 1110 (2031)
Q Consensus 1082 sNc~tYN~dgSEV----veLAeKLSQiFESrYk 1110 (2031)
.||..||++++.+ ...|..|.+.+.....
T Consensus 80 ~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 80 SNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998866 4555555555554443
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.36 E-value=9e-13 Score=146.87 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+.+.|..||..|..++.+++|..||++. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~----------~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-~~~~f~~D~~li 82 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAK----------VVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLELI 82 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChh----------hcCCHHHHhCCCCcHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 46889999999999999999999999872 3789999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEV 1113 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkKqV 1113 (2031)
|+||..||++++.|+.+|..|...|+..+.+..
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 83 VKNSATYNGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998877643
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=132.14 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
..+-..|+.||+.|..++.+++|..| +|+|+.+|++||||+||+.|+..+.|. +.+.|.+|+++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P---------------~pdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~~f~~D~~L 74 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP---------------VSDYLEVIKEPMDLSTVITKIDKHNYL-TAKDFLKDIDL 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC---------------CSSCTTSCSSCCCHHHHHHHHHTTCCC-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc---------------CccHHhHcCCCcCHHHHHHHHcCCCCC-CHHHHHHHHHH
Confidence 44567899999999999999999998 478999999999999999999999999 77789999999
Q ss_pred HHHhhhhhcCCCch----HHHHHHHhhhhhHhHHHH
Q 000150 1080 VWHHICTAYSDQSD----LLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1080 VWsNc~tYN~dgSE----VveLAeKLSQiFESrYkK 1111 (2031)
||+||..||++++. |...|..|.+.|....+.
T Consensus 75 i~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 75 ICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 457777777766655443
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=147.77 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+...|..||+.|..++.+++|..||++. .+++|+.+|++||||+||+.|+..|.|. +.+.|.+|++++
T Consensus 47 ~l~~~~~~il~~l~~~~~a~~F~~pV~~~----------~~pdY~~iIk~PmDL~tIk~kl~~~~Y~-s~~~f~~D~~li 115 (292)
T 3aad_A 47 TLSSILESIINDMRDLPNTYPFHTPVNAK----------VVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLELI 115 (292)
T ss_dssp HHHHHHHHHHHHHSSSTTCGGGSSSCCTT----------TSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCCch----------hcccHHHHcCCcCCHHHHHHHhhCCCcC-CHHHHHHHHHHH
Confidence 35788999999999999999999999872 4789999999999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKK 1111 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkK 1111 (2031)
|+||..||+.++.++.+|..|.+.|+..+.+
T Consensus 116 ~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 116 VKNSATYNGPKHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp HHHHHHHTCSSSHHHHHHTHHHHTTTTTGGG
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999988877654
No 36
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=125.80 Aligned_cols=55 Identities=47% Similarity=1.269 Sum_probs=49.3
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCcC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c~ 1207 (2031)
++..|.+|+...+.+.||+||.|+++||++||.|||..+|+|+|||+.|..+.++
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHS
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcccc
Confidence 4568999998777789999999999999999999999999999999999876443
No 37
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.23 E-value=9.8e-12 Score=138.62 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=83.3
Q ss_pred HHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCc
Q 000150 1013 AAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQS 1092 (2031)
Q Consensus 1013 Llss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgS 1092 (2031)
+...+.+++|..||+. ..+++|+.+|++||||+||+.|+..|.|. +.+.|.+||++||+||..||++++
T Consensus 149 l~~~~~~~~F~~pv~~----------~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~-~~~~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp TTTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHhhhhhHHHhCCCCh----------hHhCcHHHHhCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5578889999999987 23789999999999999999999999999 788899999999999999999999
Q ss_pred hHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1093 DLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1093 EVveLAeKLSQiFESrYkKqVLd 1115 (2031)
.++.+|..|...|+..+.+....
T Consensus 218 ~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765433
No 38
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.23 E-value=3.4e-12 Score=110.80 Aligned_cols=49 Identities=45% Similarity=1.225 Sum_probs=46.1
Q ss_pred ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1156 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.|.+|++..+.+.||+||.|+++||++|++|||.++|+|+|+|+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 5999998888889999999999999999999999999999999999864
No 39
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=138.32 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred HHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCc
Q 000150 1013 AAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQS 1092 (2031)
Q Consensus 1013 Llss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgS 1092 (2031)
|...+.+++|..||+. ..+++|+.+|++||||+||+.|+..|.|. +.+.|.+||++||.||..||++++
T Consensus 182 l~~~~~s~~F~~pvd~----------~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 182 MMAVPDSWPFHHPVNK----------KFVPDYYKVIVNPMDLETIRKNISKHKYQ-SRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp GGGSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhcCcchhHHHhcccc----------cccccHHHHcCCcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5577889999999976 35889999999999999999999999999 788899999999999999999999
Q ss_pred hHHHHHHHhhhhhHhHHHHHHH
Q 000150 1093 DLLQLAGKLCQNFEVLYKKEVL 1114 (2031)
Q Consensus 1093 EVveLAeKLSQiFESrYkKqVL 1114 (2031)
.++.+|..|...|+..+...-.
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776543
No 40
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.19 E-value=7.2e-12 Score=114.53 Aligned_cols=52 Identities=38% Similarity=1.050 Sum_probs=46.5
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCc
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNC 1206 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c 1206 (2031)
.+++.|.+|+ +.+.||+||.|+++||++|+.|||..+|+|+|+|+.|..+..
T Consensus 6 ~~~~~C~vC~---~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCR---DGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSS---CCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCC---CCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 3567899998 457999999999999999999999999999999999987643
No 41
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.18 E-value=1.4e-11 Score=111.33 Aligned_cols=50 Identities=46% Similarity=1.159 Sum_probs=45.4
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..+..|.+|+ +.++||+||.|+++||++|+.|||.++|+|+|+|+.|...
T Consensus 7 ~~~~~C~vC~---~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCK---DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTC---CCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCC---CCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456899998 4679999999999999999999999999999999999876
No 42
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.17 E-value=1.5e-11 Score=140.50 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=81.8
Q ss_pred cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHH
Q 000150 1016 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2031)
Q Consensus 1016 s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVv 1095 (2031)
+..+++|..||++. .+++|+.||++||||+||+.|+..|.|. +.+.|.+||++||+||+.||+.++.|+
T Consensus 178 ~~~s~~F~~pvd~~----------~~PdY~~iIk~PMDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~ 246 (311)
T 2r0y_A 178 VKLSEPFMELVDKD----------ELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIY 246 (311)
T ss_dssp SCTTGGGSSCCCTT----------TCHHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CccHHHHhCCCChh----------hcccHHHHhCCccCHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45689999999872 4789999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHhhhhhHhHHHHHHHhH
Q 000150 1096 QLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1096 eLAeKLSQiFESrYkKqVLdy 1116 (2031)
.+|..|...|+..+++.....
T Consensus 247 ~~A~~L~~~f~~~~~~~~~p~ 267 (311)
T 2r0y_A 247 KDATTLTNYFNYLIQKEFFPE 267 (311)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999998865443
No 43
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.17 E-value=1.9e-11 Score=141.90 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=82.2
Q ss_pred cchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHHHhhhhhcCCCchHH
Q 000150 1016 ADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLL 1095 (2031)
Q Consensus 1016 s~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVWsNc~tYN~dgSEVv 1095 (2031)
+..+++|..||++. .+++|+.||++||||+||+.||..+.|. +.+.|.+||++||+||+.||.+++.|+
T Consensus 228 ~~~s~~F~~pvd~~----------~~PdY~~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lif~N~~~yN~~~s~i~ 296 (361)
T 2r10_A 228 VKLSEPFMELVDKD----------ELPEYYEIVHSPMALSIVKQNLEIGQYS-KIYDFIIDMLLVFQNAHIFNDPSALIY 296 (361)
T ss_dssp SCTTGGGSSCCCTT----------TCTHHHHHCSSCCCHHHHHHHHHHTCCC-BHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CcchhcccCCCChh----------hcccHHHHhcCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45679999999872 4789999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHhhhhhHhHHHHHHHhHh
Q 000150 1096 QLAGKLCQNFEVLYKKEVLTLV 1117 (2031)
Q Consensus 1096 eLAeKLSQiFESrYkKqVLdyV 1117 (2031)
.+|..|...|+..+.+..+...
T Consensus 297 ~~A~~L~~~f~~~~~~~~~p~~ 318 (361)
T 2r10_A 297 KDATTLTNYFNYLIQKEFFPEL 318 (361)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999998654433
No 44
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=113.70 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=45.1
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.....|.+|+ ++++||+||.|+++||++|++|||..+|+|+|||+.|...
T Consensus 10 ~~~~~C~vC~---~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCG---DGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTS---CCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCC---CCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799997 5678999999999999999999999999999999999865
No 45
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.16 E-value=3.1e-11 Score=116.89 Aligned_cols=50 Identities=28% Similarity=0.785 Sum_probs=45.3
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..++.|.+|+. +++||+||.|+++||++|+.|||.++|+|+|+|+.|...
T Consensus 23 ~n~~~C~vC~~---~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCC---CCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45568999984 578999999999999999999999999999999999866
No 46
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=114.16 Aligned_cols=54 Identities=46% Similarity=1.142 Sum_probs=48.5
Q ss_pred CCcccc--ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCC-CccCCcCCC
Q 000150 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLS 1203 (2031)
Q Consensus 1150 ~pwedd--~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeG-DWyCPsCi~ 1203 (2031)
..|.+. .|.+|++..+++.||+||.|+++||++||+|||..+|+| +|||+.|..
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 456543 688999888899999999999999999999999999999 999999974
No 47
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.11 E-value=2.5e-11 Score=112.60 Aligned_cols=55 Identities=44% Similarity=1.096 Sum_probs=48.8
Q ss_pred CCcccc--ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCC-CccCCcCCCC
Q 000150 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLSG 1204 (2031)
Q Consensus 1150 ~pwedd--~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeG-DWyCPsCi~~ 1204 (2031)
..|.+. .|.+|++..+++.||+||.|+++||++||+|||.++|+| +|+|+.|...
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456554 568888888899999999999999999999999999999 9999999864
No 48
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=108.09 Aligned_cols=48 Identities=46% Similarity=1.161 Sum_probs=43.8
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~ 1203 (2031)
++..|.+|+. .+.||+||.|+++||++|+.|||..+|+|+|+|+.|..
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCC---SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCC---CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4568999984 47999999999999999999999999999999999964
No 49
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=3.7e-11 Score=108.60 Aligned_cols=49 Identities=41% Similarity=1.111 Sum_probs=44.4
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|+. .++||+||.|+++||++|+.|||.++|+|+|+|+.|...
T Consensus 10 ~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCC---CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3468999984 589999999999999999999999999999999999754
No 50
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.07 E-value=2.5e-11 Score=110.01 Aligned_cols=53 Identities=30% Similarity=0.961 Sum_probs=46.5
Q ss_pred ccccccccccCC--CCCCCeEeecCCCCCCcccccCCCCCC--C-CCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGID--KDDDNVLLCDTCDSGYHTYCLTPPLTR--V-PEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~--~d~geLLLCD~CDsaYHl~CL~PPL~e--V-PeGDWyCPsCi~~ 1204 (2031)
.++..|.+|+.. .+.+.||+||.|+.+||++|+.|||.. + |+|+|||+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999976 345899999999999999999999987 4 9999999999876
No 51
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.07 E-value=4.2e-11 Score=107.44 Aligned_cols=49 Identities=45% Similarity=1.131 Sum_probs=44.7
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++..|.+|+. .+.||+||.|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 4 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCC---CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCC---CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4578999984 579999999999999999999999999999999999765
No 52
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.05 E-value=7.3e-11 Score=111.68 Aligned_cols=54 Identities=44% Similarity=1.124 Sum_probs=47.8
Q ss_pred CCcccc--ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCC-ccCCcCCC
Q 000150 1150 APWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGN-WYCPPCLS 1203 (2031)
Q Consensus 1150 ~pwedd--~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGD-WyCPsCi~ 1203 (2031)
..|.+. .|.+|++..+++.||+||.|+++||++||.|||..+|+|+ |+|+.|+.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 456654 5788998888899999999999999999999999999999 99999974
No 53
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.02 E-value=2.5e-10 Score=132.62 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcc--hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHHH
Q 000150 1004 KQCRKVLRCAAAAD--EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 1081 (2031)
Q Consensus 1004 KRCr~ILkeLlss~--~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLVW 1081 (2031)
.-|..+|..+.... .+++|..||+. .++|+|+.||++||||+||+.|+ +.|..+.+.|.+|+++||
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~~----------~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~ 148 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPSR----------KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLT 148 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCCT----------TTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCCc----------ccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHH
Confidence 46888998887433 36889999866 45789999999999999999998 555546888999999999
Q ss_pred HhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1082 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1082 sNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
.||..||.+++.|+.+|..|...|+..+.+.
T Consensus 149 ~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 149 KNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999877754
No 54
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.02 E-value=7e-11 Score=113.69 Aligned_cols=51 Identities=29% Similarity=0.705 Sum_probs=45.3
Q ss_pred ccccccccCCCC--CCCeEeecCCCCCCcccccCCCCCC----CCCCCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKD--DDNVLLCDTCDSGYHTYCLTPPLTR----VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d--~geLLLCD~CDsaYHl~CL~PPL~e----VPeGDWyCPsCi~~ 1204 (2031)
+..|.+|+.... .+.||+||.|+++||++|+.|||.. +|+|+|||+.|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 458999987654 4789999999999999999999985 99999999999765
No 55
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.00 E-value=1.4e-10 Score=125.15 Aligned_cols=51 Identities=31% Similarity=0.813 Sum_probs=46.0
Q ss_pred CccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1151 PWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+.+++.|.+|+ +++++|+||+|+++||++|+.|||..+|.|+|+||.|...
T Consensus 4 d~~~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQ---NGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTC---CCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---CCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 34567899998 5578999999999999999999999999999999999876
No 56
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.98 E-value=2.2e-10 Score=121.36 Aligned_cols=49 Identities=35% Similarity=0.897 Sum_probs=45.2
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+++.|.+|+ +++++|+||+|+++||++|+.|||..+|+|+|+|+.|...
T Consensus 3 ~~~~C~~C~---~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQ---NGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTC---CCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCC---CCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 457899998 5688999999999999999999999999999999999876
No 57
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=126.78 Aligned_cols=54 Identities=44% Similarity=1.110 Sum_probs=43.4
Q ss_pred Cccc--cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCC-CccCCcCCCC
Q 000150 1151 PWDE--GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEG-NWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwed--d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeG-DWyCPsCi~~ 1204 (2031)
.|.| ..|.+|+...+++.||+||.|+++||++||+|||..+|+| +|+||.|...
T Consensus 169 ~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 169 NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4543 3699999888899999999999999999999999999999 9999999753
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.96 E-value=1.4e-10 Score=115.65 Aligned_cols=56 Identities=45% Similarity=1.142 Sum_probs=48.7
Q ss_pred CCCcccc---ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1149 KAPWDEG---VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1149 r~pwedd---~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
...|.+. .|.+|+...+++.||+||.|+++||++||.|||..+|+|+|+|+.|...
T Consensus 50 ~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 50 TYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp HTTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCccCccccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 3567665 4667887777899999999999999999999999999999999999754
No 59
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.96 E-value=6e-10 Score=127.46 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcc--hhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1002 IMKQCRKVLRCAAAAD--EERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1002 ImKRCr~ILkeLlss~--~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
....|+.+|..+.... -+++|.+||+. .++|+|+.||++||||+||+.|+ +.|..+.+.|.+|+++
T Consensus 29 ~~~~~~~~L~~~~~~~r~~~~~F~~p~~~----------~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~l 96 (311)
T 2r0y_A 29 FNRFISFTLDVLIDKYKDIFKDFIKLPSR----------KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVEL 96 (311)
T ss_dssp HHHHHHHHHHHHHHHSHHHHGGGSSCCCT----------TTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhHHhcCCCCc----------ccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHH
Confidence 3567777887777432 46778888765 45789999999999999999998 5555468889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHH
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKE 1112 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrYkKq 1112 (2031)
||.||..||..++.|+.+|..|.+.|+..+.+.
T Consensus 97 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 97 LTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999877764
No 60
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.93 E-value=4e-10 Score=111.97 Aligned_cols=57 Identities=42% Similarity=1.030 Sum_probs=47.1
Q ss_pred CCCCCcccccc---ccccCC-CCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCC
Q 000150 1147 IPKAPWDEGVC---KVCGID-KDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1147 lPr~pwedd~C---kVCgk~-~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~ 1203 (2031)
++...|.+..| .+|+.. .+++.||+||.|+++||++||.|||.++|+|+|+|+.|..
T Consensus 51 ~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 51 VKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp HHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred hhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34567877655 556643 3457899999999999999999999999999999999975
No 61
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.93 E-value=2.3e-10 Score=106.69 Aligned_cols=52 Identities=33% Similarity=0.892 Sum_probs=45.3
Q ss_pred CccccccccccCCC--CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1151 PWDEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwedd~CkVCgk~~--d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..++..|.+|+... +.+.||+||.|+++||++|++|| .+|+|+|||+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCc
Confidence 34567899998764 67899999999999999999998 499999999999765
No 62
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.92 E-value=4.7e-10 Score=120.31 Aligned_cols=48 Identities=29% Similarity=0.868 Sum_probs=44.3
Q ss_pred ccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++.|.+|+ +++++|+||+|+++||++|+.|||..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~---~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQ---KPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTC---CCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCC---CCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46799998 5578999999999999999999999999999999999876
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.90 E-value=5.6e-10 Score=110.12 Aligned_cols=59 Identities=39% Similarity=0.987 Sum_probs=50.8
Q ss_pred CCCCCCccccc---cccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1146 EIPKAPWDEGV---CKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1146 ~lPr~pwedd~---CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+++..|.+.. |.+|++..+.+.||+||.|+++||++||.|||..+|+|+|+|+.|...
T Consensus 43 ~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 43 PLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp TTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 34567888764 567777777788999999999999999999999999999999999654
No 64
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.86 E-value=3.7e-10 Score=108.84 Aligned_cols=50 Identities=34% Similarity=0.991 Sum_probs=44.3
Q ss_pred cccccccccCCC--CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDK--DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~--d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++..|.+|+... +.+.||+||.|+.+||++|+.||+ +|+|+|||+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCc
Confidence 456899998654 567999999999999999999985 99999999999876
No 65
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.80 E-value=1.2e-09 Score=101.48 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=47.2
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+|.+|++..+++.||+||.|+.+||++|+++++..+|.++|+|+.|..+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4457999998888788999999999999999999999999999999999765
No 66
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.66 E-value=1.3e-08 Score=101.67 Aligned_cols=53 Identities=38% Similarity=0.940 Sum_probs=47.7
Q ss_pred ccccccccccCCCCCCCeEeec--CCCCCCcccccCCCCCCCCCCCccCCcCCCCCcCCC
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKNK 1209 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD--~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c~~~ 1209 (2031)
.++++|.+|+ ++++||+|| .|+++||++||+ |..+|+|+||||.|.+..+++.
T Consensus 13 ~~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTC---CCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCC---CCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 4567899998 678999999 899999999999 9999999999999999988753
No 67
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.55 E-value=7.3e-08 Score=89.98 Aligned_cols=54 Identities=31% Similarity=0.858 Sum_probs=44.6
Q ss_pred CCCCCccccccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1147 IPKAPWDEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1147 lPr~pwedd~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+.++.+..+| +|++... +.||.||. |+ .+||+.|+. |..+|.|.||||.|...
T Consensus 9 ~~~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred cccCCCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34444555689 7987654 68999999 77 699999999 88999999999999876
No 68
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.53 E-value=6e-08 Score=95.02 Aligned_cols=48 Identities=27% Similarity=0.778 Sum_probs=43.6
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..| +|+...+.+.||+||.|+.+||+.|++|++..+|+ .|+|+.|...
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCC
Confidence 457 89988889999999999999999999999999996 8999999765
No 69
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=93.06 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=57.8
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCC-CCCcCCCccCCCCccccccccccccch
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCL-SGNCKNKYMSQVPHVSSRIPKRRHQGE 1229 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi-~~~c~~~~~sQE~~~~sq~erK~~~GE 1229 (2031)
.+++.|.+|+...+.++||+|+.|++.||.+||.|++..+|.+.|+|+.|. +..|+.............+.+.+|..+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGG
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHh
Confidence 356789999987777788999999999999999999988999999999994 665654322111112255555566555
No 70
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.39 E-value=2.8e-07 Score=90.01 Aligned_cols=51 Identities=31% Similarity=0.854 Sum_probs=42.5
Q ss_pred CCccccccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1150 APWDEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1150 ~pwedd~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++.+..+| +|++... +.||.||. |+ .+||+.|+. |..+|.|.||||.|...
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 33445578 9987654 68999999 66 799999999 88999999999999876
No 71
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.34 E-value=8.7e-08 Score=86.68 Aligned_cols=48 Identities=31% Similarity=0.881 Sum_probs=40.0
Q ss_pred cccccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+| +|++... +.||.||. |+ .+||+.|++ |..+|.|.||||.|..+
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 34578 8987644 78999999 55 799999999 88999999999999754
No 72
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.32 E-value=1.1e-07 Score=85.86 Aligned_cols=48 Identities=31% Similarity=0.913 Sum_probs=40.7
Q ss_pred cccccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+| +|++.. .+.|+.||. |+ .+||+.|++ |+.+|.|+||||.|..+
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 44578 898764 468999999 77 699999999 88999999999999754
No 73
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.26 E-value=1.7e-07 Score=97.75 Aligned_cols=51 Identities=24% Similarity=0.684 Sum_probs=44.9
Q ss_pred CccccccccccCCCCCCCeEeecCCCCCCcccccCCCCC-----C--CCCCCccCCcCCCC
Q 000150 1151 PWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLT-----R--VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1151 pwedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~-----e--VPeGDWyCPsCi~~ 1204 (2031)
+..+++|.+|+ +++++++||.|+++||..|+.|||. + .|.|+|+|+.|...
T Consensus 60 Dg~~d~C~vC~---~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSC---CCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccC---CCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34567899998 7899999999999999999999986 2 58999999999865
No 74
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=98.24 E-value=5.4e-06 Score=87.05 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHH
Q 000150 1000 DVIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVRE 1079 (2031)
Q Consensus 1000 DlImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRL 1079 (2031)
..|-..+..++..++..... -+..+...+..+-++. ++|+. ++||+|.+|+.|+..|.|. +.+.|.+|+.+
T Consensus 6 ~~lq~~l~~l~~~v~~~~De--~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~-sld~f~~D~~l 76 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDD--EGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYR-RLDLFQEHMFE 76 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCT--TSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCC--CCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 34566778888888854432 3455555566655544 45665 9999999999999999999 78889999999
Q ss_pred HHHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHh
Q 000150 1080 VWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 1115 (2031)
Q Consensus 1080 VWsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLd 1115 (2031)
||+|+..||..++.|+.-|..|++.|...|.+.+..
T Consensus 77 mf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 77 VLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999987765
No 75
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.21 E-value=2.7e-07 Score=84.17 Aligned_cols=48 Identities=33% Similarity=0.928 Sum_probs=40.1
Q ss_pred cccccccccCCCCCCCeEeecC--CC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDT--CD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~--CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+| +|++.. .+.|+.||. |+ .+||+.|++ |+.+|.|.||||.|..+
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44578 898754 468999999 55 999999999 78899999999999764
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.18 E-value=3.8e-06 Score=90.65 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCcCCCCCCCCCCCCcccccccCCChhHHHhhhcccccCCChhhHHhhHHHH
Q 000150 1001 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 1080 (2031)
Q Consensus 1001 lImKRCr~ILkeLlss~~S~~F~~PVD~dLLdLeDnd~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~GS~EaFAEDVRLV 1080 (2031)
.+......||+.|..+..+++|... .+++||||.||+.|+..|.|. +.+.|.+||++|
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~y---------------------~~k~PmDL~~i~kKl~~~~Y~-s~~eF~~Dv~lI 132 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLRY---------------------RQQQPLDLEGVKRKMDQGNYT-SVLEFSDDIVKI 132 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTC---------------------CC--CCSHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHhhhhh---------------------hhcCCccHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 3455678999999999999998663 138999999999999999999 788899999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHhHHHHHHHhH
Q 000150 1081 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTL 1116 (2031)
Q Consensus 1081 WsNc~tYN~dgSEVveLAeKLSQiFESrYkKqVLdy 1116 (2031)
|+|+..++.+.+++..+...|...|+...++..-++
T Consensus 133 f~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 133 IQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 999999999999999888888887777766554443
No 77
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.15 E-value=7.9e-07 Score=86.70 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=39.7
Q ss_pred cccccccccCCCCCCCeEeecCCC---CCCcccccCCCCCCCCCCCccCCc-CCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCD---SGYHTYCLTPPLTRVPEGNWYCPP-CLS 1203 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CD---saYHl~CL~PPL~eVPeGDWyCPs-Ci~ 1203 (2031)
+..+| +|+.... +.||.||.|+ .+||+.|++ |..+|.|.||||. |..
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34578 8987544 5799999977 899999999 8899999999999 864
No 78
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.94 E-value=7.9e-07 Score=91.56 Aligned_cols=52 Identities=23% Similarity=0.733 Sum_probs=45.0
Q ss_pred CCccccccccccCCCCCCCeEeecCCCCCCcccccCCCC-----CCC--CCCCccCCcCCCC
Q 000150 1150 APWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPL-----TRV--PEGNWYCPPCLSG 1204 (2031)
Q Consensus 1150 ~pwedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL-----~eV--PeGDWyCPsCi~~ 1204 (2031)
++..+++|.+|+ +++++++||.|+++||..|+.|++ .++ |.++|+|+.|...
T Consensus 53 ~Dg~~~~C~vC~---dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCA---EGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTC---CCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecC---CCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 355667899998 789999999999999999999984 455 8999999999765
No 79
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.88 E-value=3.1e-06 Score=84.63 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=51.5
Q ss_pred cccccccCC-------CCCCCeEeecCCCCCCcccccCCCCC---CCCCCCccCCcC-CCCCcCCCccCCCCcccccccc
Q 000150 1155 GVCKVCGID-------KDDDNVLLCDTCDSGYHTYCLTPPLT---RVPEGNWYCPPC-LSGNCKNKYMSQVPHVSSRIPK 1223 (2031)
Q Consensus 1155 d~CkVCgk~-------~d~geLLLCD~CDsaYHl~CL~PPL~---eVPeGDWyCPsC-i~~~c~~~~~sQE~~~~sq~er 1223 (2031)
+.|.+|... .++++||.|+.|++.||.+||.+++. .+|++.|+|+.| .+..|+.............+.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~ 81 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDR 81 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSSSCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCCCCc
Confidence 468888653 34679999999999999999998743 588999999999 4666654221111111255555
Q ss_pred ccccch
Q 000150 1224 RRHQGE 1229 (2031)
Q Consensus 1224 K~~~GE 1229 (2031)
-+|..+
T Consensus 82 ~yH~~C 87 (114)
T 2kwj_A 82 GYHMYC 87 (114)
T ss_dssp EEETTT
T ss_pred cccccc
Confidence 565555
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.79 E-value=5e-06 Score=82.80 Aligned_cols=75 Identities=21% Similarity=0.483 Sum_probs=52.2
Q ss_pred cccccccCC------CCCCCeEeecCCCCCCcccccCC--CC-CCCCCCCccCCcC-CCCCcCCCccCCCCcc-cccccc
Q 000150 1155 GVCKVCGID------KDDDNVLLCDTCDSGYHTYCLTP--PL-TRVPEGNWYCPPC-LSGNCKNKYMSQVPHV-SSRIPK 1223 (2031)
Q Consensus 1155 d~CkVCgk~------~d~geLLLCD~CDsaYHl~CL~P--PL-~eVPeGDWyCPsC-i~~~c~~~~~sQE~~~-~sq~er 1223 (2031)
.+|.+|... ..+++||.|+.|++.||++||++ ++ ..++.++|+|+.| .+..|+......+... ...+.+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~ 85 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDR 85 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCC
Confidence 568888754 35679999999999999999974 23 3578999999999 5777764332222111 245566
Q ss_pred ccccch
Q 000150 1224 RRHQGE 1229 (2031)
Q Consensus 1224 K~~~GE 1229 (2031)
.+|..+
T Consensus 86 ~yH~~C 91 (112)
T 3v43_A 86 GFHMEC 91 (112)
T ss_dssp EECGGG
T ss_pred eeeccc
Confidence 666555
No 81
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=6.2e-06 Score=76.92 Aligned_cols=46 Identities=37% Similarity=0.963 Sum_probs=38.7
Q ss_pred cccccccCCCCCCCeEeecCCC---CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCD---SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CD---saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+| +|++.. .+.|+.||.|+ .+||+.|+. |...|.+.||||.|...
T Consensus 7 ~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred eEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 467 487664 45999999986 899999999 77889999999999755
No 82
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.73 E-value=1.3e-05 Score=74.39 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=41.9
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..+| +|++..+++.||.||.|+.+||..|++.....+| +.|+|+.|...
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 34578 9998878778999999999999999997666566 58999999753
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.59 E-value=2.3e-05 Score=70.91 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=40.4
Q ss_pred ccccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCC-CCCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVP-eGDWyCPsCi~~ 1204 (2031)
..+|.+|++..+ .+.|+.||.|+.+||..|++....... ...|+|+.|..+
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 457999998754 678999999999999999995433332 258999999876
No 84
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.49 E-value=3.7e-05 Score=67.59 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=40.4
Q ss_pred ccccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCC
Q 000150 1152 WDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1152 wedd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~ 1203 (2031)
|+..+| +|++..+++.|+.||.|..+||..|++.+...+| ..|+||.|..
T Consensus 2 ~d~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred CcCeEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 344456 7888877789999999999999999996655565 5899999963
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.39 E-value=2.4e-05 Score=73.12 Aligned_cols=49 Identities=22% Similarity=0.644 Sum_probs=39.0
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCC---C--CCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR---V--PEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~e---V--PeGDWyCPsCi~~ 1204 (2031)
.+| +|++..+.+.|+.||.|+.+||..|++..... + +...|+|+.|...
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 468 89988777899999999999999999843221 0 2468999999865
No 86
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.37 E-value=6.1e-05 Score=69.94 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=38.4
Q ss_pred cccccccCCCCC-CCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDD-DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~-geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+| +|++..+. ..|+.||.|..+||..|+...........|+|+.|...
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 468 79987654 47999999999999999996533223468999999765
No 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.32 E-value=2.1e-05 Score=82.49 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=39.7
Q ss_pred cccccccccCCC-CCCCeEeecCCCCCCcccccCCCCCC-CCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTPPLTR-VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~-d~geLLLCD~CDsaYHl~CL~PPL~e-VPeGDWyCPsCi~~ 1204 (2031)
+..+| +|++.. +.+.|+.||.|+.+||..|++.+... .+.+.|+|+.|...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34579 999865 46789999999999999999853322 23568999999865
No 88
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.30 E-value=9.5e-05 Score=68.16 Aligned_cols=48 Identities=27% Similarity=0.685 Sum_probs=36.7
Q ss_pred ccccccccCCCCCCCeEeecC--CCCCCcccccCCCC-----CCCCCCCccCCcCCC
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLTPPL-----TRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~--CDsaYHl~CL~PPL-----~eVPeGDWyCPsCi~ 1203 (2031)
.-.| +|+...+.+.|+.||. |..+||..|++-+- ..+| ..|||+.|+.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p-~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVP-PVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCC-SSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCC-CcEECcCccC
Confidence 3468 7998888899999995 99999999997221 1122 2699999964
No 89
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.24 E-value=5.8e-05 Score=75.03 Aligned_cols=48 Identities=29% Similarity=0.784 Sum_probs=39.4
Q ss_pred cccccccCCC-CCCCeEeec-CCCCCCcccccCCCCCC--------CCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDK-DDDNVLLCD-TCDSGYHTYCLTPPLTR--------VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~-d~geLLLCD-~CDsaYHl~CL~PPL~e--------VPeGDWyCPsCi~~ 1204 (2031)
..|.+|++.. +.+.|+.|| .|+.+||..|++ |+. .|.+.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg--lt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG--MTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT--CCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC--cCHHHHHhhccCCCCCEECccccCc
Confidence 3689998863 456899998 999999999999 443 47789999999866
No 90
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.22 E-value=0.00011 Score=69.29 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=39.3
Q ss_pred ccccccccCCCCCCCeEeec--CCCCCCcccccCCCCCCCCC-------CCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPLTRVPE-------GNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD--~CDsaYHl~CL~PPL~eVPe-------GDWyCPsCi~~ 1204 (2031)
..+| +|+...+.+.|+.|| .|+.+||..|+. |...|. ..|+|+.|...
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg--i~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI--LPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS--CCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEc--cccccccccccCCCCEECCCCCcc
Confidence 3478 899887788999999 999999999998 444332 48999999765
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.17 E-value=4.6e-05 Score=70.32 Aligned_cols=46 Identities=28% Similarity=0.849 Sum_probs=38.9
Q ss_pred cccccccCCC-CCCCeEeec-CCCCCCcccccCCCCCC--------CCCCCccCCcCC
Q 000150 1155 GVCKVCGIDK-DDDNVLLCD-TCDSGYHTYCLTPPLTR--------VPEGNWYCPPCL 1202 (2031)
Q Consensus 1155 d~CkVCgk~~-d~geLLLCD-~CDsaYHl~CL~PPL~e--------VPeGDWyCPsCi 1202 (2031)
..|.+|++.. +...|+.|| .|+.+||..|++ |+. -|.+.|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg--lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICTG--MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT--CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhccC--CCHHHHHHhhccCCCcEECcCcc
Confidence 4699999874 466899999 999999999998 544 478899999995
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.08 E-value=9.3e-05 Score=69.80 Aligned_cols=49 Identities=18% Similarity=0.487 Sum_probs=38.0
Q ss_pred cccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCC-CCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVP-EGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVP-eGDWyCPsCi~~ 1204 (2031)
.+| +|++..+ .+.|+.||.|+.+||..|+.-...... ...|+|+.|...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 367 8988754 789999999999999999984322221 258999999876
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.88 E-value=0.00017 Score=63.44 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=35.0
Q ss_pred ccccccCCCC-CCCeEeec-CCCCCCcccccCCCCCCCCCCCccCCcCC
Q 000150 1156 VCKVCGIDKD-DDNVLLCD-TCDSGYHTYCLTPPLTRVPEGNWYCPPCL 1202 (2031)
Q Consensus 1156 ~CkVCgk~~d-~geLLLCD-~CDsaYHl~CL~PPL~eVPeGDWyCPsCi 1202 (2031)
.|-+|++..+ ++.|+.|| .|+.+||..|++-.........|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678887764 66799999 89999999999932222223789999994
No 94
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=96.66 E-value=0.00047 Score=64.69 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=35.6
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVSN 199 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~~ 199 (2031)
..||+.+ .+.+ +..+++|++|.|++|+|+.||+.||+..+.
T Consensus 7 p~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~ 53 (69)
T 3vxv_A 7 PCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGE 53 (69)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCC
Confidence 5799888 3444 788999999999999999999999998864
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.52 E-value=0.00052 Score=66.75 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=41.7
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCC------------CCCCCCCCccCCcCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPP------------LTRVPEGNWYCPPCLS 1203 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PP------------L~eVPeGDWyCPsCi~ 1203 (2031)
.|+.|.||..- ..+.++.|..|.+.||..||.++ +...+.+-|.|+.|-.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 56789999743 36788899999999999999986 5667888899999943
No 96
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.42 E-value=0.00087 Score=72.54 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=37.3
Q ss_pred ccccccCCCCCC----CeEeecCCCCCCcccccCCCC------CCCCC-CCccCCcCCCC
Q 000150 1156 VCKVCGIDKDDD----NVLLCDTCDSGYHTYCLTPPL------TRVPE-GNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCgk~~d~g----eLLLCD~CDsaYHl~CL~PPL------~eVPe-GDWyCPsCi~~ 1204 (2031)
.|.+|++..+++ .|+.||.|+.+||..|++..- ..+|+ ..|+||.|...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 588888765544 499999999999999998431 12343 37999999876
No 97
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.38 E-value=0.0006 Score=63.89 Aligned_cols=48 Identities=27% Similarity=0.719 Sum_probs=37.3
Q ss_pred ccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCCC-CCccCCcCCCC
Q 000150 1156 VCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE-GNWYCPPCLSG 1204 (2031)
Q Consensus 1156 ~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVPe-GDWyCPsCi~~ 1204 (2031)
+| +|+...+ .+.|+.||.|+.+||..|++-.-...+. ..|+|+.|...
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 56 8887654 6789999999999999999944333333 47999999765
No 98
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=96.37 E-value=0.00087 Score=63.84 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=33.4
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGL 196 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl 196 (2031)
..||..+ ++.+ +..+++|++|.|++|+|+.||++||+-
T Consensus 12 P~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~ 55 (75)
T 1d9n_A 12 GPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP 55 (75)
T ss_dssp CSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT
T ss_pred CCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc
Confidence 5799887 4455 789999999999999999999999984
No 99
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=96.25 E-value=0.0012 Score=62.45 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceeccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLV 197 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~ 197 (2031)
..||+.+ ++.+ +..+++|++|.|++|+|+.||+.||+..
T Consensus 14 p~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~~ 58 (72)
T 2ky8_A 14 PPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNA 58 (72)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTTS
T ss_pred CCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhcC
Confidence 6799888 3444 7899999999999999999999999874
No 100
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.10 E-value=0.0019 Score=78.97 Aligned_cols=41 Identities=24% Similarity=0.603 Sum_probs=30.7
Q ss_pred CCCCeEeecCCCCCCcccccCCCCCCC-CCCCccCCcCCCCC
Q 000150 1165 DDDNVLLCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLSGN 1205 (2031)
Q Consensus 1165 d~geLLLCD~CDsaYHl~CL~PPL~eV-PeGDWyCPsCi~~~ 1205 (2031)
.+..|+.||.|+.+||..|++-.-... ..+.|+||.|....
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~ 95 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHH
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCC
Confidence 345799999999999999999332222 23579999998653
No 101
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.92 E-value=0.001 Score=80.91 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=37.8
Q ss_pred cccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCCC---CCccCCcCCCCC
Q 000150 1155 GVCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE---GNWYCPPCLSGN 1205 (2031)
Q Consensus 1155 d~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVPe---GDWyCPsCi~~~ 1205 (2031)
.+| +|++..+ .+.|+.||.|+.+||..|++ +...+. +.|+|+.|....
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg--l~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVG--VEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHT--CCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecC--cCcccccCCCEEECCCCcCCc
Confidence 467 8987644 78899999999999999998 444332 479999997653
No 102
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=95.87 E-value=0.0021 Score=63.83 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
..||..+ .+.+ +..++||++|.|++|+|+.||+.||.-.+
T Consensus 25 P~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 25 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp CTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 6899888 4445 78999999999999999999999995443
No 103
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=95.58 E-value=0.0078 Score=62.67 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=34.6
Q ss_pred ccccccC-----CCcC-ceeeEEEEecCCceecccccccccccccc
Q 000150 159 ERVWASG-----NSIP-RTSYQNYYAVNGNRFDSMFDVPCHLGLVS 198 (2031)
Q Consensus 159 e~gw~v~-----~~~~-~~~~~~y~~pdG~~f~s~~~va~~Lgl~~ 198 (2031)
..||..+ .+.+ +..++||++|+|++|+|+.||+.||+-.+
T Consensus 39 P~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~ 84 (133)
T 1ub1_A 39 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVG 84 (133)
T ss_dssp TTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSC
T ss_pred CCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCC
Confidence 6899888 4445 89999999999999999999999996544
No 104
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.00 E-value=0.0099 Score=59.03 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=30.9
Q ss_pred CCCeEeecCCCCCCcccccCCCCCCCCCC----CccCCcCCCC
Q 000150 1166 DDNVLLCDTCDSGYHTYCLTPPLTRVPEG----NWYCPPCLSG 1204 (2031)
Q Consensus 1166 ~geLLLCD~CDsaYHl~CL~PPL~eVPeG----DWyCPsCi~~ 1204 (2031)
...|+.|+.|+.+||..|+.++...++.+ .|.||.|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45689999999999999999887655444 3999999865
No 105
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.96 E-value=0.0051 Score=74.22 Aligned_cols=49 Identities=22% Similarity=0.631 Sum_probs=36.5
Q ss_pred ccccccCCCC-CCCeEeecCCCCCCcccccCCCCCCCCC-CCccCCcCCCCC
Q 000150 1156 VCKVCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPE-GNWYCPPCLSGN 1205 (2031)
Q Consensus 1156 ~CkVCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVPe-GDWyCPsCi~~~ 1205 (2031)
+| +|++..+ .+.|+.||.|+.+||..|++-.-...+. +.|+||.|....
T Consensus 7 yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 7 YC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 35 8887644 7899999999999999999832222222 579999997653
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.17 E-value=0.05 Score=54.79 Aligned_cols=51 Identities=16% Similarity=0.393 Sum_probs=42.9
Q ss_pred ccCCCCCCcccc--ccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccC
Q 000150 1144 ASEIPKAPWDEG--VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYC 1198 (2031)
Q Consensus 1144 ~s~lPr~pwedd--~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyC 1198 (2031)
+..+|...|.+. .|.+|++... +.|..|+.+||..|+.++|..-|...|+|
T Consensus 46 L~~~P~g~W~Cp~c~C~~C~k~~~----~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 46 LTQPPYGKWECPWHQCDECSSAAV----SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CSSCCSSCCCCGGGBCTTTCSBCC----EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCCCEECCCCCCCcCCCCCC----cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 456788889887 5667876433 88999999999999999999999999998
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.59 E-value=0.078 Score=52.14 Aligned_cols=38 Identities=26% Similarity=0.697 Sum_probs=29.4
Q ss_pred CeEeecCCCCCCcccccCCC------CCCCCCC-CccCCcCCCCC
Q 000150 1168 NVLLCDTCDSGYHTYCLTPP------LTRVPEG-NWYCPPCLSGN 1205 (2031)
Q Consensus 1168 eLLLCD~CDsaYHl~CL~PP------L~eVPeG-DWyCPsCi~~~ 1205 (2031)
.|+.||.|+.+||..|..-+ |..+|+. .|.||.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 47899999999999998733 1455643 79999998653
No 108
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=74.16 E-value=2.4 Score=46.30 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=31.6
Q ss_pred cccCCCC-CCCeEeecCCCCCCcccccCCCCCCCCCCC----ccCCcCCCC
Q 000150 1159 VCGIDKD-DDNVLLCDTCDSGYHTYCLTPPLTRVPEGN----WYCPPCLSG 1204 (2031)
Q Consensus 1159 VCgk~~d-~geLLLCD~CDsaYHl~CL~PPL~eVPeGD----WyCPsCi~~ 1204 (2031)
-||+..+ .-.+|.|+.|.++||..|+..+...+-.++ ..|..|..+
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4776544 557999999999999999986554433333 448888654
No 109
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=69.54 E-value=1.1 Score=44.52 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.3
Q ss_pred ccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCCcC
Q 000150 1154 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCK 1207 (2031)
Q Consensus 1154 dd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~c~ 1207 (2031)
+.+|.+|++. -|+.|+..||++|+.+| .|.|..|+...+.
T Consensus 7 C~~C~~C~~~-------~C~~C~~c~~~~~~~~~-------~~~~~~c~~~~~~ 46 (117)
T 4bbq_A 7 CRKCKACVQG-------ECGVCHYCRDMKKFGGP-------GRMKQSCVLRQCL 46 (117)
T ss_dssp CSCSHHHHSC-------CCSCSHHHHHSGGGTSC-------CCSCCCCGGGCCS
T ss_pred CCcCcCcCCc-------CCCCCCCCcCCcccCCC-------Cccccchhheeec
Confidence 5678888754 29999999999999876 4888888766543
No 110
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.84 E-value=2.9 Score=45.06 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=38.2
Q ss_pred cccccccccCCCCCCCeEeec--CCCCCCcccccCCCC-----CC-CCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPL-----TR-VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD--~CDsaYHl~CL~PPL-----~e-VPeGDWyCPsCi~~ 1204 (2031)
.+.+|.+|+ +++.+++|| .|.+.|-..|+.--+ .+ +....|.|--|...
T Consensus 78 ~~~yC~wC~---~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICC---GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTS---CCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEec---CCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 456899998 678999999 899999999965222 11 44568999999876
No 111
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.95 E-value=10 Score=36.04 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=31.7
Q ss_pred ccccccccccCCCC-CCCeEe-e--cCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGIDKD-DDNVLL-C--DTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~~d-~geLLL-C--D~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+...|.+|....+ ++.++. | .++-..||..||..=|.. .+...||.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~ 67 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYE 67 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCB
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCe
Confidence 34568999985543 334442 2 222489999999843322 123589999876
No 112
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=52.23 E-value=2.4 Score=50.79 Aligned_cols=49 Identities=24% Similarity=0.735 Sum_probs=37.6
Q ss_pred cccccccccCCCCCCCeEeec--CCCCCCcccccCCCC-----CC-CCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCD--TCDSGYHTYCLTPPL-----TR-VPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD--~CDsaYHl~CL~PPL-----~e-VPeGDWyCPsCi~~ 1204 (2031)
.+.+|..|+ +++++++|| .|.+.|-..|+.--+ .+ .....|.|--|...
T Consensus 92 ~~~yCr~C~---~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICC---SGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTC---CCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcC---CCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 355899998 678999999 999999999976322 11 22357999999876
No 113
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=52.09 E-value=8.3 Score=32.65 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=32.6
Q ss_pred ccccccccCCCCC-CCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKDD-DNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d~-geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+..|.+|...-.. +.......|.-.||..|+..-+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 4579999765433 334444569999999999865543 3579999764
No 114
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.76 E-value=24 Score=31.93 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=32.9
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGN 1205 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~~ 1205 (2031)
....|.+|...-.....+.--.|.-.||..|+..-+.. ...||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 34579999765444433333358889999998754432 24899998763
No 115
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=42.18 E-value=5.1 Score=35.60 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=32.8
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|...-..+..+..-.|.-.||..|+..-+.. ...||.|...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 34579999765444444555579999999998754332 2369999865
No 116
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.55 E-value=7.4 Score=35.24 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=33.9
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++..|.+|...-..+..+..-.|.-.||..|+..-+.. ...||.|+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 45679999866555555555569999999998854332 2479999865
No 117
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=39.38 E-value=5.9 Score=38.44 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=23.2
Q ss_pred eecCCCCCCcccccCCCCCCC-CCCCccCCcCCCCC
Q 000150 1171 LCDTCDSGYHTYCLTPPLTRV-PEGNWYCPPCLSGN 1205 (2031)
Q Consensus 1171 LCD~CDsaYHl~CL~PPL~eV-PeGDWyCPsCi~~~ 1205 (2031)
..-.|.-.||..|+..-+..- +...-.||.|+...
T Consensus 57 ~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred ecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 355788999999988544211 12345799998663
No 118
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=37.83 E-value=4.1 Score=36.88 Aligned_cols=49 Identities=29% Similarity=0.530 Sum_probs=31.7
Q ss_pred cccccccccCCCCCCCeEeecCCC---CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCD---SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CD---saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+...|.+|....++.-++-| .|. +.+|..||..=+.. .+++.||.|...
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 34579999765433333344 454 49999998754432 246899999865
No 119
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=36.84 E-value=13 Score=44.51 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=31.5
Q ss_pred cccccccCCCCC-CC--eEeec--CCCCCCcccccCCCCCCCCCCC-------ccCCcCCCC
Q 000150 1155 GVCKVCGIDKDD-DN--VLLCD--TCDSGYHTYCLTPPLTRVPEGN-------WYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~-ge--LLLCD--~CDsaYHl~CL~PPL~eVPeGD-------WyCPsCi~~ 1204 (2031)
..|.+|-....+ +. ...|+ .|...||..||..=+...+.+. =-||.|...
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 469999755443 33 35698 8999999999983222222110 139988764
No 120
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.61 E-value=21 Score=33.82 Aligned_cols=20 Identities=25% Similarity=0.742 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCccCCcCCCC
Q 000150 1184 LTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1184 L~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
-..+...+|+ +|.||.|-..
T Consensus 30 pGT~f~~lPd-dw~CP~Cga~ 49 (70)
T 1dx8_A 30 PGTPFVDLSD-SFMCPACRSP 49 (70)
T ss_dssp SSCCGGGSCT-TCBCTTTCCB
T ss_pred CCCchhhCCC-CCcCCCCCCC
Confidence 3445567776 7999999876
No 121
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=35.14 E-value=22 Score=34.74 Aligned_cols=21 Identities=24% Similarity=0.816 Sum_probs=15.8
Q ss_pred ccCCCCCCCCCCCccCCcCCCC
Q 000150 1183 CLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1183 CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+-+.+..++|+ +|.||.|-..
T Consensus 49 ~pGT~fedlPd-dW~CPvCga~ 69 (81)
T 2kn9_A 49 AAGTRWDDIPD-DWSCPDCGAA 69 (81)
T ss_dssp CTTCCTTTSCT-TCCCTTTCCC
T ss_pred CCCCChhHCCC-CCcCCCCCCC
Confidence 34445677887 7999999876
No 122
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=33.74 E-value=10 Score=32.05 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=32.8
Q ss_pred cccccccccCCC-CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDK-DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~-d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|...- +.+.....-.|.-.||..|+..-+..- ..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 346799997653 334456667799999999987433221 479999764
No 123
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=33.32 E-value=9.9 Score=36.05 Aligned_cols=48 Identities=23% Similarity=0.453 Sum_probs=32.9
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|...-..+..+..-.|.-.||..|+..-+.. .-.||.|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 45579999755444444444459999999998754432 2389999865
No 124
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.12 E-value=37 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.831 Sum_probs=15.2
Q ss_pred cCCCCCCCCCCCccCCcCCCC
Q 000150 1184 LTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1184 L~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
-+.+...+|+ +|.||.|-..
T Consensus 26 pGt~f~~lP~-dw~CP~Cg~~ 45 (52)
T 1e8j_A 26 PGTKFEDLPD-DWACPVCGAS 45 (52)
T ss_dssp SSCCTTSSCT-TCCCSSSCCC
T ss_pred CCCchHHCCC-CCcCCCCCCc
Confidence 3445667877 8999999876
No 125
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.84 E-value=25 Score=33.42 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=34.3
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
....|.+|...-.. -+.|..|...||..|+..=|..... =.||.|...
T Consensus 14 ~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSC
T ss_pred CCCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCc
Confidence 34679999755443 3578899999999998755544322 379999855
No 126
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.59 E-value=27 Score=30.93 Aligned_cols=17 Identities=35% Similarity=1.232 Sum_probs=13.6
Q ss_pred CCCCCCCCCccCCcCCCC
Q 000150 1187 PLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1187 PL~eVPeGDWyCPsCi~~ 1204 (2031)
+..++|+ +|.||.|-..
T Consensus 23 ~f~~lP~-dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPD-DWCCPVCGVS 39 (46)
T ss_dssp CGGGSCT-TCBCTTTCCB
T ss_pred chhhCCC-CCcCcCCCCc
Confidence 4567887 7999999865
No 127
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.14 E-value=30 Score=34.12 Aligned_cols=35 Identities=34% Similarity=0.819 Sum_probs=27.8
Q ss_pred CCeEeecCCC-CCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1167 DNVLLCDTCD-SGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1167 geLLLCD~CD-saYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
=.|++|..|. .+-|..|.. |..- ..+|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~--l~~~-~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSS--LRPN-SKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGT--CCTT-CSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhC--CcCC-CCCEECCcCccc
Confidence 4789999999 589999988 5443 348999999854
No 128
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.08 E-value=20 Score=33.37 Aligned_cols=47 Identities=21% Similarity=0.632 Sum_probs=30.7
Q ss_pred ccccccccCCCC------------CCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1154 EGVCKVCGIDKD------------DDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1154 dd~CkVCgk~~d------------~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
++.|.+|...-+ .+..+.--.|.-.||..|+..=|..- -.||.|+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 456777765432 22233334799999999998655443 279999865
No 129
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.54 E-value=32 Score=31.29 Aligned_cols=19 Identities=32% Similarity=0.948 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCccCCcCCCC
Q 000150 1185 TPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1185 ~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+.+...+|+ +|.||.|-..
T Consensus 27 Gt~f~~lP~-dw~CP~Cga~ 45 (55)
T 2v3b_B 27 GTRWEDIPA-DWVCPDCGVG 45 (55)
T ss_dssp TCCGGGSCT-TCCCTTTCCC
T ss_pred CCChhHCCC-CCcCCCCCCC
Confidence 344566776 7999999876
No 130
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.24 E-value=34 Score=31.19 Aligned_cols=17 Identities=35% Similarity=1.161 Sum_probs=13.3
Q ss_pred CCCCCCCCCccCCcCCCC
Q 000150 1187 PLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1187 PL~eVPeGDWyCPsCi~~ 1204 (2031)
+..++|+ +|.||.|-..
T Consensus 29 ~fe~lP~-dw~CP~Cg~~ 45 (54)
T 4rxn_A 29 DFKDIPD-DWVCPLCGVG 45 (54)
T ss_dssp CGGGSCT-TCBCTTTCCB
T ss_pred ChhHCCC-CCcCcCCCCc
Confidence 4567776 7999999876
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.04 E-value=22 Score=31.93 Aligned_cols=48 Identities=27% Similarity=0.440 Sum_probs=31.5
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
.+..|.+|...-.....+.--.|.-.||..|+..-+.. .-.||.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcc
Confidence 34579999865444333333358989999998743322 1279999865
No 132
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=25.81 E-value=15 Score=41.19 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=32.6
Q ss_pred cccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1155 GVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1155 d~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
..|.+|..-.-. -..|..|...||..|+.--+... +.=-||.|...
T Consensus 181 ~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 181 KICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp CBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 469999755443 37899999999999986433332 23479999654
No 133
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.72 E-value=28 Score=34.48 Aligned_cols=21 Identities=24% Similarity=0.820 Sum_probs=15.7
Q ss_pred ccCCCCCCCCCCCccCCcCCCC
Q 000150 1183 CLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1183 CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+-+.+..++|+ +|.||.|-..
T Consensus 57 ~pGT~fedlPd-dW~CPvCga~ 77 (87)
T 1s24_A 57 TPGTRFEDIPD-DWCCPDCGAT 77 (87)
T ss_dssp CSCCCGGGCCT-TCCCSSSCCC
T ss_pred CCCCChhHCCC-CCCCCCCCCC
Confidence 34445677887 7999999876
No 134
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.62 E-value=33 Score=30.90 Aligned_cols=19 Identities=26% Similarity=0.891 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCccCCcCCCC
Q 000150 1185 TPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1185 ~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
+.+..++|+ +|.||.|-..
T Consensus 26 Gt~f~~lP~-dw~CP~Cg~~ 44 (52)
T 1yk4_A 26 GTKFEDLPD-DWVCPLCGAP 44 (52)
T ss_dssp TCCGGGSCT-TCBCTTTCCB
T ss_pred CCCHhHCCC-CCcCCCCCCC
Confidence 334567777 7999999876
No 135
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.85 E-value=19 Score=28.62 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=24.7
Q ss_pred CCCccccccceeecccccccCCCccccccccccccccccccccC
Q 000150 1708 TNSELTCKERMYRCECLEPVLPTRFHCRRCHLSFSARNELEEHN 1751 (2031)
Q Consensus 1708 ~~~~~~~~er~~RCdCLEpi~Psr~hc~~ch~t~~~~~e~e~hn 1751 (2031)
...++-..+|+| .|..|.++|.....|..|-
T Consensus 2 s~~~~h~~~~~~-------------~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2ep0_A 2 SSGSSGTGEKPY-------------KCDVCHKSFRYGSSLTVHQ 32 (46)
T ss_dssp CCCCSSTTCCSE-------------ECSSSCCEESSHHHHHHHH
T ss_pred CCCCCCCCCCCe-------------eCcccCcccCChHHHHHHH
Confidence 344556678888 6778999999999998884
No 136
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=22.87 E-value=65 Score=28.94 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=32.0
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCC---CCCCccCCcCCCC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRV---PEGNWYCPPCLSG 1204 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eV---PeGDWyCPsCi~~ 1204 (2031)
++..|.+|...-..-.++ .|.-.||..|+..-+..- ..+.-.||.|...
T Consensus 11 ~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred cCCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 345799997543332222 688889999988655432 1235689999876
No 137
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=22.72 E-value=20 Score=36.51 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=0.0
Q ss_pred cCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1173 DTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1173 D~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
-.|.-.||..|+.+=|.. .-.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 368999999999965544 2369999765
No 138
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.23 E-value=37 Score=39.74 Aligned_cols=41 Identities=22% Similarity=0.532 Sum_probs=32.2
Q ss_pred ccccccccccCCC-----------CCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcCCCC
Q 000150 1152 WDEGVCKVCGIDK-----------DDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSG 1204 (2031)
Q Consensus 1152 wedd~CkVCgk~~-----------d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsCi~~ 1204 (2031)
|...+|.+||... ++-..+.|..|...||+. .+.||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCC
Confidence 8899999998642 233589999999999853 3689999765
No 139
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.78 E-value=17 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.0
Q ss_pred ccccccccccccccccccC
Q 000150 1733 HCRRCHLSFSARNELEEHN 1751 (2031)
Q Consensus 1733 hc~~ch~t~~~~~e~e~hn 1751 (2031)
.|..|.++|.....|..|-
T Consensus 5 ~C~~C~~~f~~~~~l~~H~ 23 (30)
T 2m0d_A 5 QCDYCGRSFSDPTSKMRHL 23 (30)
T ss_dssp ECTTTCCEESCHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHH
Confidence 6778999999998888773
No 140
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.68 E-value=17 Score=25.60 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=16.3
Q ss_pred ccccccccccccccccccC
Q 000150 1733 HCRRCHLSFSARNELEEHN 1751 (2031)
Q Consensus 1733 hc~~ch~t~~~~~e~e~hn 1751 (2031)
.|..|.++|.....|..|-
T Consensus 5 ~C~~C~k~f~~~~~l~~H~ 23 (28)
T 2kvf_A 5 SCSVCGKRFSLKHQMETHY 23 (28)
T ss_dssp ECSSSCCEESCHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHH
Confidence 6778999999999888873
No 141
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.41 E-value=45 Score=28.26 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=28.8
Q ss_pred cccccccccCCCCCCCeEeecCCCCCCcccccCCCCCCCCCCCccCCcC
Q 000150 1153 DEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 1201 (2031)
Q Consensus 1153 edd~CkVCgk~~d~geLLLCD~CDsaYHl~CL~PPL~eVPeGDWyCPsC 1201 (2031)
+...|.+|...-....++ .|.-.||..|+..-+... .+.-.||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 345799997554433332 588889999987544332 235678877
No 142
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.20 E-value=18 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.8
Q ss_pred cccccccccccccccccc
Q 000150 1733 HCRRCHLSFSARNELEEH 1750 (2031)
Q Consensus 1733 hc~~ch~t~~~~~e~e~h 1750 (2031)
.|..|.++|.....|..|
T Consensus 5 ~C~~C~k~f~~~~~l~~H 22 (27)
T 2kvh_A 5 SCSLCPQRSRDFSAMTKH 22 (27)
T ss_dssp ECSSSSCEESSHHHHHHH
T ss_pred cCCCcChhhCCHHHHHHH
Confidence 688999999999888877
No 143
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=20.54 E-value=45 Score=32.46 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=28.3
Q ss_pred CCCCCCccccccccccCCCCCCCeEeecC--CCCCCcccccC
Q 000150 1146 EIPKAPWDEGVCKVCGIDKDDDNVLLCDT--CDSGYHTYCLT 1185 (2031)
Q Consensus 1146 ~lPr~pwedd~CkVCgk~~d~geLLLCD~--CDsaYHl~CL~ 1185 (2031)
.||+.-|. -.|.+|... ..+-.+.|.. |...||..|..
T Consensus 10 NIp~~R~~-l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 10 NIPPARWK-LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCCC-CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHH
T ss_pred CCChHHhc-CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHH
Confidence 46777774 469999632 2477888975 99999999954
No 144
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.31 E-value=24 Score=28.07 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=23.6
Q ss_pred CCccccccceeecccccccCCCccccccccccccccccccccC
Q 000150 1709 NSELTCKERMYRCECLEPVLPTRFHCRRCHLSFSARNELEEHN 1751 (2031)
Q Consensus 1709 ~~~~~~~er~~RCdCLEpi~Psr~hc~~ch~t~~~~~e~e~hn 1751 (2031)
..++-.++|+| .|..|.++|.....|..|-
T Consensus 3 ~~~~h~~~k~~-------------~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2ytt_A 3 SGSSGEGEKPY-------------QCSECGKSFSGSYRLTQHW 32 (46)
T ss_dssp CSSSCSCCCTT-------------CCSSSCCCCSSHHHHHHHH
T ss_pred CCCCCCCCCCe-------------eCCCCCcccCCHHHHHHHH
Confidence 34455677888 7788999999999998883
No 145
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.25 E-value=27 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCCccccccceeecccccccCCCccccccccccccccccccccC
Q 000150 1708 TNSELTCKERMYRCECLEPVLPTRFHCRRCHLSFSARNELEEHN 1751 (2031)
Q Consensus 1708 ~~~~~~~~er~~RCdCLEpi~Psr~hc~~ch~t~~~~~e~e~hn 1751 (2031)
+-.++-.++|+| -|..|.++|.....|..|-
T Consensus 2 ~h~~~h~~~k~~-------------~C~~C~k~f~~~~~L~~H~ 32 (46)
T 2el6_A 2 SSGSSGAGVNPY-------------KCSQCEKSFSGKLRLLVHQ 32 (46)
T ss_dssp CSCCSSCCCCSE-------------ECSSSSCEESSHHHHHHHH
T ss_pred CCCCCCCCCCCe-------------ECCCCCcccCCHHHHHHHH
Confidence 344556678888 6788999999999998874
Done!