Query 000151
Match_columns 2029
No_of_seqs 350 out of 613
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 6.4E-26 2.2E-30 213.0 4.9 72 114-185 3-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 5.6E-25 1.9E-29 209.6 6.0 73 113-185 6-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 7.5E-10 2.6E-14 108.3 6.0 82 869-954 13-97 (100)
4 2doa_A RNA polymerase II elong 98.8 1.9E-09 6.4E-14 106.4 5.5 82 869-954 12-96 (104)
5 2ct0_A Non-SMC element 1 homol 85.2 0.22 7.5E-06 47.1 0.8 16 1430-1445 33-48 (74)
6 2kiz_A E3 ubiquitin-protein li 81.9 0.64 2.2E-05 42.6 2.5 37 1426-1484 30-66 (69)
7 1bby_A RAP30; average structur 81.6 0.33 1.1E-05 45.0 0.4 32 898-930 35-66 (69)
8 1v87_A Deltex protein 2; ring- 80.4 0.38 1.3E-05 48.8 0.4 37 1428-1481 58-94 (114)
9 2ecm_A Ring finger and CHY zin 79.2 0.49 1.7E-05 41.2 0.6 19 1427-1445 23-41 (55)
10 2xeu_A Ring finger protein 4; 78.5 0.46 1.6E-05 42.5 0.3 18 1428-1445 25-42 (64)
11 2ea6_A Ring finger protein 4; 77.2 0.71 2.4E-05 42.0 1.2 19 1427-1445 36-54 (69)
12 3ng2_A RNF4, snurf, ring finge 77.2 0.74 2.5E-05 42.2 1.3 18 1428-1445 32-49 (71)
13 2ct2_A Tripartite motif protei 77.0 0.77 2.6E-05 43.9 1.4 32 1428-1478 34-65 (88)
14 1chc_A Equine herpes virus-1 r 75.5 1.1 3.8E-05 40.7 2.0 38 1427-1486 20-57 (68)
15 1x4j_A Ring finger protein 38; 75.1 0.44 1.5E-05 44.5 -0.9 18 1428-1445 41-58 (75)
16 2ecv_A Tripartite motif-contai 74.8 0.97 3.3E-05 42.8 1.4 37 1428-1480 34-70 (85)
17 2ep4_A Ring finger protein 24; 73.7 1.3 4.3E-05 41.2 1.9 18 1428-1445 33-50 (74)
18 2ysl_A Tripartite motif-contai 72.4 0.83 2.8E-05 42.2 0.3 32 1428-1478 35-66 (73)
19 1iym_A EL5; ring-H2 finger, ub 72.3 0.63 2.2E-05 40.5 -0.5 17 1428-1444 24-40 (55)
20 1g25_A CDK-activating kinase a 72.2 1.4 4.8E-05 39.8 1.8 18 1428-1445 23-40 (65)
21 2ecw_A Tripartite motif-contai 71.4 1.3 4.3E-05 42.0 1.3 35 1428-1478 34-68 (85)
22 2csy_A Zinc finger protein 183 69.9 1.8 6.1E-05 41.0 2.0 31 1428-1480 30-60 (81)
23 2ecy_A TNF receptor-associated 69.6 1.4 4.9E-05 39.9 1.2 18 1428-1445 30-47 (66)
24 2ect_A Ring finger protein 126 67.7 0.48 1.6E-05 44.5 -2.5 17 1428-1444 33-49 (78)
25 2l0b_A E3 ubiquitin-protein li 67.7 1.7 5.7E-05 42.4 1.3 17 1428-1444 58-74 (91)
26 2yur_A Retinoblastoma-binding 66.7 1.9 6.4E-05 40.2 1.4 30 1428-1477 31-60 (74)
27 2ecl_A Ring-box protein 2; RNF 65.5 1.8 6E-05 41.3 1.0 17 1428-1444 45-61 (81)
28 2fc7_A ZZZ3 protein; structure 63.7 5.5 0.00019 38.3 4.0 44 117-161 26-74 (82)
29 1e4u_A Transcriptional repress 63.3 1.5 5.2E-05 41.6 0.1 30 1430-1480 32-61 (78)
30 3j20_W 30S ribosomal protein S 62.8 1.5 5.2E-05 39.7 -0.0 37 1885-1927 4-46 (63)
31 2djb_A Polycomb group ring fin 62.1 3 0.0001 38.5 1.8 18 1428-1445 31-48 (72)
32 3dpl_R Ring-box protein 1; ubi 62.0 2.1 7E-05 43.2 0.7 21 1425-1445 67-87 (106)
33 3fl2_A E3 ubiquitin-protein li 61.7 2.7 9.2E-05 43.2 1.6 18 1428-1445 67-84 (124)
34 3lrq_A E3 ubiquitin-protein li 61.4 2.1 7.2E-05 42.4 0.7 29 1429-1478 39-67 (100)
35 2dip_A Zinc finger SWIM domain 58.8 2.8 9.6E-05 41.7 1.0 42 117-162 36-77 (98)
36 1tot_A CREB-binding protein; z 58.7 2.9 0.0001 36.7 1.0 37 117-160 11-47 (52)
37 3ztg_A E3 ubiquitin-protein li 57.7 3.9 0.00013 39.5 1.8 30 1428-1477 29-58 (92)
38 1fre_A Nuclear factor XNF7; zi 55.3 5.3 0.00018 33.0 2.0 37 116-158 4-40 (42)
39 2d8t_A Dactylidin, ring finger 55.2 1.4 4.8E-05 40.6 -1.7 17 1428-1444 30-46 (71)
40 1jm7_A BRCA1, breast cancer ty 55.1 3.5 0.00012 41.2 1.1 31 1428-1477 36-66 (112)
41 2ckl_B Ubiquitin ligase protei 54.6 4.1 0.00014 44.0 1.5 18 1428-1445 70-87 (165)
42 2e5r_A Dystrobrevin alpha; ZZ 54.5 5.6 0.00019 36.3 2.2 41 117-161 16-61 (63)
43 2ecn_A Ring finger protein 141 54.4 1.4 4.7E-05 40.4 -1.9 18 1428-1445 29-46 (70)
44 3nw0_A Non-structural maintena 54.3 3 0.0001 48.0 0.5 28 1430-1477 198-225 (238)
45 2egp_A Tripartite motif-contai 53.8 0.91 3.1E-05 42.5 -3.3 37 1428-1479 27-63 (79)
46 2y43_A E3 ubiquitin-protein li 53.3 3.3 0.00011 40.7 0.5 17 1429-1445 39-55 (99)
47 2did_A Tripartite motif protei 51.6 9.3 0.00032 33.2 3.1 41 115-161 8-48 (53)
48 4ayc_A E3 ubiquitin-protein li 50.7 3.7 0.00013 43.1 0.4 17 1428-1444 68-84 (138)
49 2d8s_A Cellular modulator of i 49.9 7.1 0.00024 37.3 2.2 29 1432-1480 41-69 (80)
50 3u5c_b RP61, YS20, 40S ribosom 48.6 3.6 0.00012 39.1 -0.0 37 1885-1927 23-65 (82)
51 1t1h_A Gspef-atpub14, armadill 48.3 4.4 0.00015 37.8 0.5 18 1428-1445 23-40 (78)
52 1qxf_A GR2, 30S ribosomal prot 48.2 4 0.00014 37.4 0.1 28 1900-1927 5-38 (66)
53 4a0k_B E3 ubiquitin-protein li 47.6 3.9 0.00013 42.0 0.0 19 1428-1446 81-99 (117)
54 4ap4_A E3 ubiquitin ligase RNF 46.9 6.6 0.00023 40.1 1.6 18 1428-1445 94-111 (133)
55 3l11_A E3 ubiquitin-protein li 46.4 2.1 7.2E-05 43.3 -2.3 31 1428-1479 30-60 (115)
56 1z6u_A NP95-like ring finger p 46.2 5.8 0.0002 42.3 1.1 30 1428-1478 93-122 (150)
57 2ecj_A Tripartite motif-contai 46.1 4 0.00014 35.6 -0.2 18 1428-1445 30-47 (58)
58 2yvr_A Transcription intermedi 45.5 7.2 0.00025 33.4 1.4 39 115-159 6-44 (50)
59 2csv_A Tripartite motif protei 45.3 9 0.00031 35.5 2.1 38 115-159 18-55 (72)
60 2xzm_6 RPS27E; ribosome, trans 44.6 4.6 0.00016 38.4 -0.1 37 1885-1927 21-63 (81)
61 2yrg_A Tripartite motif-contai 44.5 13 0.00044 33.2 2.9 40 116-161 15-54 (59)
62 4ap4_A E3 ubiquitin ligase RNF 44.3 6.2 0.00021 40.4 0.9 18 1428-1445 29-46 (133)
63 2ckl_A Polycomb group ring fin 43.0 5.5 0.00019 39.8 0.3 18 1428-1445 31-48 (108)
64 2dja_A Midline-2; tripartite m 42.6 6.6 0.00023 37.5 0.7 40 116-160 19-58 (84)
65 2ysj_A Tripartite motif-contai 42.2 7.7 0.00026 34.6 1.1 18 1428-1445 35-52 (63)
66 4b6d_A RAC GTPase-activating p 35.1 17 0.0006 32.9 2.2 21 116-136 23-43 (61)
67 2d8u_A Ubiquitin ligase TRIM63 34.1 12 0.0004 33.8 0.9 40 115-159 8-47 (64)
68 3hct_A TNF receptor-associated 33.0 12 0.00041 38.0 0.9 18 1428-1445 33-50 (118)
69 3ddt_A E3 ubiquitin-protein li 32.9 11 0.00039 32.0 0.6 39 116-159 7-45 (48)
70 3iz6_X 40S ribosomal protein S 32.5 11 0.00039 36.1 0.6 38 1885-1928 25-68 (86)
71 4ic3_A E3 ubiquitin-protein li 31.0 10 0.00035 35.3 -0.0 33 1428-1486 39-72 (74)
72 1wim_A KIAA0161 protein; ring 30.0 25 0.00086 34.0 2.6 38 1428-1479 23-62 (94)
73 1rmd_A RAG1; V(D)J recombinati 29.0 19 0.00065 36.2 1.6 19 1428-1446 38-56 (116)
74 3mjh_B Early endosome antigen 28.7 14 0.00046 29.7 0.3 8 1470-1477 6-13 (34)
75 2egm_A Tripartite motif-contai 28.6 10 0.00034 33.8 -0.5 39 114-158 17-55 (57)
76 1wiv_A UBP14, ubiquitin-specif 27.3 62 0.0021 30.3 4.6 45 2-46 16-69 (73)
77 3k1l_B Fancl; UBC, ring, RWD, 26.9 17 0.00057 43.8 0.8 39 1428-1477 331-369 (381)
78 2y1n_A E3 ubiquitin-protein li 25.5 28 0.00096 42.7 2.4 37 1428-1485 347-383 (389)
79 2d8v_A Zinc finger FYVE domain 25.4 37 0.0013 31.1 2.5 35 123-160 14-52 (67)
80 1jm7_B BARD1, BRCA1-associated 24.3 7.7 0.00026 39.4 -2.4 26 1429-1478 39-64 (117)
81 2ecg_A Baculoviral IAP repeat- 22.9 25 0.00085 32.6 1.0 33 1428-1486 40-73 (75)
82 3knv_A TNF receptor-associated 22.2 15 0.00053 38.6 -0.6 29 1428-1477 46-74 (141)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.92 E-value=6.4e-26 Score=212.96 Aligned_cols=72 Identities=42% Similarity=1.112 Sum_probs=66.9
Q ss_pred CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000151 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK 185 (2029)
Q Consensus 114 ~~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~ 185 (2029)
..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus 3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 4579999999999999999999999999999999999999999999884 78999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.90 E-value=5.6e-25 Score=209.57 Aligned_cols=73 Identities=32% Similarity=0.769 Sum_probs=68.9
Q ss_pred CCCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec---CCccccCCCcccccccCCCCcCC
Q 000151 113 GQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT---GGGCCDCGDVTAWKREGFCSRHK 185 (2029)
Q Consensus 113 ~~~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~---~gG~CDCGd~~awk~~~fC~~H~ 185 (2029)
-..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus 6 h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 6 HTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred cCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 45689999999999999999999999999999999999999999999874 68999999999999999999884
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7.5e-10 Score=108.29 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhcccccccccccCchhH
Q 000151 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2029)
Q Consensus 869 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~Dpy~~~y~~~~~ 945 (2029)
-+|+.|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|.|+++.+++||..|+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~----~~~y~Lk~~~~~eVq~dWp~Yte~er 88 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSK----DLSYTLKDYVFKELQRDWPGYSEIDR 88 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT----TTEEEECSTHHHHSCTTCTTCCTTHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc----CCeeehhHHHHHHhccCCCCCCHHHH
Confidence 499999999999999999999999887644 45799999999999874 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000151 946 QVAEERYLR 954 (2029)
Q Consensus 946 q~aeer~~r 954 (2029)
|..+.++.+
T Consensus 89 q~v~r~L~~ 97 (100)
T 2e5n_A 89 RSLESVLSR 97 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988665543
No 4
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.84 E-value=1.9e-09 Score=106.39 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhcccccccccccCchhH
Q 000151 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2029)
Q Consensus 869 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~Dpy~~~y~~~~~ 945 (2029)
-+|+.|||.||++|.+.+||...|..+... ...|+.||++||++.++ +|.|+||+++|.|+|+.+++|+..|+
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~----~~~y~Lk~~~y~eVq~dWp~Yte~er 87 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ 87 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----CCeeeehHHHHHHhcCCCCCCCHHHH
Confidence 399999999999999999999999887644 45799999999999864 48999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000151 946 QVAEERYLR 954 (2029)
Q Consensus 946 q~aeer~~r 954 (2029)
|..+.+..+
T Consensus 88 q~v~r~l~~ 96 (104)
T 2doa_A 88 QLLKRVLVR 96 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988666543
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.22 E-value=0.22 Score=47.06 Aligned_cols=16 Identities=31% Similarity=0.937 Sum_probs=15.1
Q ss_pred ccChHhhHHHHHHHHH
Q 000151 1430 SCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1430 sCGH~MH~~C~~~Y~~ 1445 (2029)
.|||.+|..|+.+|++
T Consensus 33 ~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SSCCEECHHHHHHHST
T ss_pred CCCchhhHHHHHHHHH
Confidence 8999999999999974
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=81.91 E-value=0.64 Score=42.57 Aligned_cols=37 Identities=32% Similarity=0.761 Sum_probs=27.4
Q ss_pred ccccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccceec
Q 000151 1426 IHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484 (2029)
Q Consensus 1426 vh~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LP 1484 (2029)
+....|||..|..|+..++.. + + .||+||+--+..+|
T Consensus 30 ~~~~~C~H~fc~~Ci~~~~~~-------~----~-----------~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 30 VRRLPCMHLFHQVCVDQWLIT-------N----K-----------KCPICRVDIEAQLP 66 (69)
T ss_dssp EEECTTSCEEEHHHHHHHHHH-------C----S-----------BCTTTCSBSCSCCC
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------C----C-----------CCcCcCccccCcCC
Confidence 335679999999999998743 0 0 29999986666555
No 7
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=81.58 E-value=0.33 Score=45.05 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHccccCCCCCCcceEEeehhhc
Q 000151 898 KFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYW 930 (2029)
Q Consensus 898 ~~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~ 930 (2029)
...-+-+||++||+|.. +|...|+|+|||||-
T Consensus 35 P~~yLKeiL~~Ia~~~k-~g~~~~~weLKpEyr 66 (69)
T 1bby_A 35 PVVYLKEILKEIGVQNV-KGIHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHHHHHCCCBC-CTTCCCBBCCCCSSC
T ss_pred cHHHHHHHHHHHHHHHc-CCCCCCeeeCcHHHh
Confidence 34568999999999986 456789999999975
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.41 E-value=0.38 Score=48.75 Aligned_cols=37 Identities=30% Similarity=0.677 Sum_probs=26.6
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANS 1481 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns 1481 (2029)
+..|||..|..|+..++..-. ..+-..||+||+.-..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----------------~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----------------KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----------------CSSCCBCTTTCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHccc-----------------CCCCCcCCCCCCccCC
Confidence 678999999999999973210 0234579999986543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.20 E-value=0.49 Score=41.21 Aligned_cols=19 Identities=32% Similarity=0.938 Sum_probs=16.3
Q ss_pred cccccChHhhHHHHHHHHH
Q 000151 1427 HLSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1427 h~ssCGH~MH~~C~~~Y~~ 1445 (2029)
.+..|||..|..|+.++++
T Consensus 23 ~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 23 HVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp EECTTSCEEETTHHHHHHH
T ss_pred EecCCCCcccHHHHHHHHH
Confidence 3667999999999999864
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=78.50 E-value=0.46 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.5
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|.+|+.++++
T Consensus 25 ~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 25 STECGHVFCSQCLRDSLK 42 (64)
T ss_dssp EETTSCEEEHHHHHHHHH
T ss_pred eCCCCCchhHHHHHHHHH
Confidence 678999999999999975
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.24 E-value=0.71 Score=41.97 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccChHhhHHHHHHHHH
Q 000151 1427 HLSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1427 h~ssCGH~MH~~C~~~Y~~ 1445 (2029)
.+..|||..|..|++++++
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp EECSSSCEEEHHHHHHHHH
T ss_pred EeCCCCChhcHHHHHHHHH
Confidence 3678999999999999975
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=77.16 E-value=0.74 Score=42.24 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|+.++++
T Consensus 32 ~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLK 49 (71)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred eCCCCChHhHHHHHHHHH
Confidence 678999999999999974
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.97 E-value=0.77 Score=43.95 Aligned_cols=32 Identities=31% Similarity=0.864 Sum_probs=25.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
+..|||..|..|+.++++.- .+...||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASS-------------------INGVRCPFCSKI 65 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHC-------------------SSCBCCTTTCCC
T ss_pred ECCCCChhhHHHHHHHHHcC-------------------CCCcCCCCCCCc
Confidence 55899999999999997531 135689999975
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.51 E-value=1.1 Score=40.72 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=29.3
Q ss_pred cccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccceecCC
Q 000151 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2029)
Q Consensus 1427 h~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LPil 1486 (2029)
....|||..|..|..+++.. + ..||+||+--+.+++.+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ------------N----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH------------S----------CSTTTTCCCCCCEECCC
T ss_pred EecCCCCeeHHHHHHHHHhC------------c----------CcCcCCChhhHhhhhcc
Confidence 36679999999999998731 0 26999998777776665
No 15
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.15 E-value=0.44 Score=44.55 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=15.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
...|||..|..|..++++
T Consensus 41 ~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp EETTTEEEETTHHHHHHH
T ss_pred EECCCCHhHHHHHHHHHH
Confidence 456999999999999863
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.84 E-value=0.97 Score=42.78 Aligned_cols=37 Identities=35% Similarity=0.618 Sum_probs=27.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~N 1480 (2029)
+..|||..|..|+..|+..-... .+.+.||+||.--.
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~----------------~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSMLD----------------KGESSCPVCRISYQ 70 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHHT----------------TSCCCCTTTCCSSC
T ss_pred eCCCCCHHHHHHHHHHHHHhhcC----------------CCCCcCCCCCCccC
Confidence 44799999999999998763311 24678999997543
No 17
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.67 E-value=1.3 Score=41.16 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+-.|||..|..|+.++++
T Consensus 33 ~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp EETTTEEEEHHHHHHHHH
T ss_pred EcCCCCEecHHHHHHHHH
Confidence 346999999999999873
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.43 E-value=0.83 Score=42.19 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.6
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
+..|||..|..|+.++++. ..+...||+||.-
T Consensus 35 ~~~CgH~fC~~Ci~~~~~~-------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 35 TIDCGHNFCLKCITQIGET-------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp ECTTCCEEEHHHHHHHCSS-------------------SCSCCCCSSSCCC
T ss_pred EcCCCChhhHHHHHHHHHc-------------------CCCCCCCCCCCCc
Confidence 4489999999999998650 0245689999974
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.29 E-value=0.63 Score=40.52 Aligned_cols=17 Identities=41% Similarity=1.099 Sum_probs=14.4
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
+..|||..|.+|..+++
T Consensus 24 ~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 24 LPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CSSSCCEECTTHHHHTT
T ss_pred CCCCCCcccHHHHHHHH
Confidence 33699999999998885
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.19 E-value=1.4 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.7
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|.++++.
T Consensus 23 ~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp ECTTCCCEEHHHHHHHHH
T ss_pred cCCCCCHhHHHHHHHHHH
Confidence 568999999999998864
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.40 E-value=1.3 Score=41.96 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=26.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
+..|||..|..|+.+|+.... .+.+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~----------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNR----------------NTDGKGNCPVCRVP 68 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSB----------------CTTSCBCCTTTCCC
T ss_pred eCCCCCHHHHHHHHHHHHhcc----------------CCCCCCCCCCCCCc
Confidence 557999999999999975421 12356889999974
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.90 E-value=1.8 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~N 1480 (2029)
+..|||..|..|+.++++. ...||+||.--+
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 30 VTKCRHYFCESCALEHFRA----------------------TPRCYICDQPTG 60 (81)
T ss_dssp ECTTSCEEEHHHHHHHHHH----------------------CSBCSSSCCBCC
T ss_pred EccCCCHhHHHHHHHHHHC----------------------CCcCCCcCcccc
Confidence 6789999999999999752 125999998655
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.64 E-value=1.4 Score=39.89 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.9
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|+.++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 30 QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCSSSCCCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999975
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.73 E-value=0.48 Score=44.53 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=14.9
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
...|||..|..|+.+++
T Consensus 33 ~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp ECTTSCEEETTTTHHHH
T ss_pred EeCCCCeecHHHHHHHH
Confidence 44699999999999986
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=67.69 E-value=1.7 Score=42.37 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=14.7
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
...|||..|..|...++
T Consensus 58 ~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 58 ELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EETTTEEEEHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHH
Confidence 45599999999999986
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=66.68 E-value=1.9 Score=40.20 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=23.7
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
+..|||..|..|+.+++... +.+.||+||+
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~--------------------~~~~CP~Cr~ 60 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLES--------------------DEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHS--------------------SSSCCSSSCC
T ss_pred cCCCCCHHHHHHHHHHHHhc--------------------CCCcCCCCCC
Confidence 44499999999999997631 2357999999
No 27
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.49 E-value=1.8 Score=41.29 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.1
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
+..|||..|.+|..+++
T Consensus 45 ~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred eCCCCCccChHHHHHHH
Confidence 55799999999999986
No 28
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=63.74 E-value=5.5 Score=38.31 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.2
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCC----CCC-CCceeEEEe
Q 000151 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQN----GNH-KEHDYSIIY 161 (2029)
Q Consensus 117 ~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~----~~H-~~H~~~~~~ 161 (2029)
.|+..--.| +-|+|.+|.-+...-||..||.. ..| ..|.+..+.
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 365432223 67999999865668899999975 578 589998775
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=63.31 E-value=1.5 Score=41.65 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=22.8
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccccc
Q 000151 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2029)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~N 1480 (2029)
.|||..+..|+.++.+ .+.+.||+||.--.
T Consensus 32 ~CGH~fC~~Cl~~~~~---------------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT---------------------DENGLCPACRKPYP 61 (78)
T ss_dssp TTSCCCCHHHHHHHTT---------------------SSCSBCTTTCCBCS
T ss_pred CCCCCcCHHHHHHHHh---------------------cCCCCCCCCCCccC
Confidence 4999999999987631 13478999998543
No 30
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.82 E-value=1.5 Score=39.73 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=29.6
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeecccccccC
Q 000151 1885 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1927 (2029)
Q Consensus 1885 ~Li~LP~~~~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1927 (2029)
+||+-|+.| +.+.+||.|+.. ...++.|..||+++|+
T Consensus 4 rLv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 4 PIIPMPRSR------FLRVKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp GGCCCCSCC------EEEEECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ccccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 466667654 467899999864 5889999999998876
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.14 E-value=3 Score=38.49 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||.-|..|..++++
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp CSSSCCEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999985
No 32
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=62.02 E-value=2.1 Score=43.25 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=17.2
Q ss_pred CccccccChHhhHHHHHHHHH
Q 000151 1425 GIHLSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1425 gvh~ssCGH~MH~~C~~~Y~~ 1445 (2029)
.+....|||..|..|...++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT
T ss_pred eEeecccCcEECHHHHHHHHH
Confidence 344678999999999999853
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=61.70 E-value=2.7 Score=43.19 Aligned_cols=18 Identities=39% Similarity=0.778 Sum_probs=16.0
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|+..++.
T Consensus 67 ~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 67 TTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred EeeCCCcccHHHHHHHHh
Confidence 458999999999999875
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=61.43 E-value=2.1 Score=42.38 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=23.8
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1429 ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
..|||.-|..|+.++++.- .+.||+||.-
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~---------------------~~~CP~Cr~~ 67 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQ---------------------RAQCPHCRAP 67 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHT---------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHHC---------------------cCCCCCCCCc
Confidence 7899999999999987531 0679999974
No 35
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=58.82 E-value=2.8 Score=41.71 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=31.8
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec
Q 000151 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT 162 (2029)
Q Consensus 117 ~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~ 162 (2029)
.|+..--.| .-|+|..|. ..-+|.+||..+.|..|.|..+..
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 466532223 679999996 366999999999999999977544
No 36
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=58.67 E-value=2.9 Score=36.71 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=28.7
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEE
Q 000151 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 160 (2029)
Q Consensus 117 ~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~ 160 (2029)
.|++.. | .-|+|..|. ..-||..||..+.| +|....+
T Consensus 11 ~C~~~i--g-~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV--E-TRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE--S-SEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC--c-ceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 466653 3 679999996 46699999999999 7887654
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.67 E-value=3.9 Score=39.51 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.3
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
+..|||..+..|+..++.. .+.+.||+||.
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~ 58 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQ 58 (92)
T ss_dssp CTTTCCEECHHHHHHHHHH--------------------CTTCCCTTTCC
T ss_pred CCCCCCHHHHHHHHHHHHh--------------------cCCCcCcCCCC
Confidence 3349999999999998751 12368999996
No 38
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=55.30 E-value=5.3 Score=32.96 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=26.6
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeE
Q 000151 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2029)
Q Consensus 116 ~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~ 158 (2029)
..|+.-- ....|-|.+|+ ..+|..|+..+.|+||++.
T Consensus 4 ~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~ 40 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDG----TLSCVICRDSLKHASHNFL 40 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSS----SSSCCTTSSCSSCTTCCCC
T ss_pred ccchhhC--CeeeEEeCCCC----eEEeccCCCCCCCCCCcEe
Confidence 4576653 34556677655 4599999999999999863
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.17 E-value=1.4 Score=40.64 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.3
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
...|||..|..|+.+++
T Consensus 30 ~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp EETTTEEEEHHHHHHCT
T ss_pred EccCCCHHHHHHHHHHH
Confidence 44699999999998774
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.13 E-value=3.5 Score=41.20 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
+..|||..|..|+.+++..- .+.+.||+||.
T Consensus 36 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 36 STKCDHIFCKFCMLKLLNQK-------------------KGPSQCPLCKN 66 (112)
T ss_dssp BCTTSCCCCSHHHHHHHHSS-------------------SSSCCCTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHhC-------------------CCCCCCcCCCC
Confidence 45799999999999987520 13478999997
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=54.55 E-value=4.1 Score=43.99 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.8
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|+.+++.
T Consensus 70 ~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 70 TKECLHRFCADCIITALR 87 (165)
T ss_dssp ETTTCCEEEHHHHHHHHH
T ss_pred eCCCCChhHHHHHHHHHH
Confidence 348999999999999975
No 42
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.54 E-value=5.6 Score=36.32 Aligned_cols=41 Identities=27% Similarity=0.671 Sum_probs=28.9
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCC----CC-CceeEEEe
Q 000151 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN----HK-EHDYSIIY 161 (2029)
Q Consensus 117 ~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~----H~-~H~~~~~~ 161 (2029)
.|++.--.| .-|+|.+|. ..-||..||..+. |+ .|.+..+.
T Consensus 16 ~C~~~pi~G-~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMMG-FRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSCS-CEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCcceec-ceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 466652223 789999995 3679999998775 74 78776654
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.37 E-value=1.4 Score=40.42 Aligned_cols=18 Identities=28% Similarity=0.850 Sum_probs=15.3
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|..+++.
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 29 ILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp EETTTEEECHHHHHHSSC
T ss_pred ccCCCCcccHHHHHHHHH
Confidence 667999999999988753
No 44
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=54.33 E-value=3 Score=48.04 Aligned_cols=28 Identities=36% Similarity=0.902 Sum_probs=22.2
Q ss_pred ccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
.|||.+|..|+.+|+++ ++.-.||.|+.
T Consensus 198 ~C~~~~H~~C~~~~~~~--------------------~~~~~CP~C~~ 225 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQS--------------------NAEPRCPHCND 225 (238)
T ss_dssp SSCCEECHHHHHHHTTT--------------------CSSCBCTTTCC
T ss_pred ccChHHHHHHHHHHHHh--------------------CCCCCCCCCCC
Confidence 49999999999999732 13446999987
No 45
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=53.77 E-value=0.91 Score=42.55 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~ 1479 (2029)
+..|||..|..|+.+|++.-. ....+...||+||.--
T Consensus 27 ~l~CgH~fC~~Ci~~~~~~~~---------------~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 27 SLDCGHSLCRACITVSNKEAV---------------TSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCSSSCCCCHHHHSCCCCCCS---------------SSCCCCCCCSSSCCCC
T ss_pred ECCCCCHHHHHHHHHHHHhcc---------------cCCCCCCcCCCCCCcC
Confidence 457999999999998753210 1124578899999753
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=53.26 E-value=3.3 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=15.1
Q ss_pred cccChHhhHHHHHHHHH
Q 000151 1429 SSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1429 ssCGH~MH~~C~~~Y~~ 1445 (2029)
..|||.-|..|+.+++.
T Consensus 39 ~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TTTCCEEEHHHHHHHHT
T ss_pred CCCCCHhhHHHHHHHHH
Confidence 47999999999999974
No 47
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=51.61 E-value=9.3 Score=33.21 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=31.5
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000151 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2029)
Q Consensus 115 ~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 161 (2029)
...|..-- ...-|-|.+|+ ..+|..|+..+.|++|++.-..
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQ----EAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSC----SEECHHHHTSSTTTTSCEEECC
T ss_pred CCcChhhC--CeeeEEeCCCC----eEEeccccCCCCCCCCcEeeHH
Confidence 45787663 45677888876 4699999999999999986543
No 48
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.70 E-value=3.7 Score=43.07 Aligned_cols=17 Identities=18% Similarity=0.671 Sum_probs=15.0
Q ss_pred ccccChHhhHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYV 1444 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~ 1444 (2029)
+..|||..|..|...++
T Consensus 68 ~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 68 TLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred ECCCCCCccHHHHHHHH
Confidence 66899999999998875
No 49
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.88 E-value=7.1 Score=37.27 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.3
Q ss_pred ChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccccc
Q 000151 1432 GHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2029)
Q Consensus 1432 GH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~N 1480 (2029)
+|..|.+|.++.+..- +...||+||.--+
T Consensus 41 ~h~fH~~Cl~~Wl~~~--------------------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--------------------DTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHH--------------------CCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhC--------------------CCCCCCCCCCeee
Confidence 5999999999998641 1347999998543
No 50
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=48.58 E-value=3.6 Score=39.13 Aligned_cols=37 Identities=19% Similarity=0.548 Sum_probs=30.8
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeecccccccC
Q 000151 1885 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1927 (2029)
Q Consensus 1885 ~Li~LP~~~~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1927 (2029)
+||+-|+.| +...+||.|+.. ...++.|..||+++|+
T Consensus 23 ~Lv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 23 TLVQGPRSY------FLDVKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp SSSCCCCCC------EEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred eeccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 578888765 467899999975 5789999999998887
No 51
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=48.34 E-value=4.4 Score=37.82 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||.-+..|..+|++
T Consensus 23 ~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp EETTTEEEEHHHHHHHHT
T ss_pred EcCCCCeecHHHHHHHHH
Confidence 568999999999999974
No 52
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=48.21 E-value=4 Score=37.37 Aligned_cols=28 Identities=29% Similarity=0.797 Sum_probs=23.7
Q ss_pred HhhcccCCCCCC------CCCceeeecccccccC
Q 000151 1900 YIKQCCSDCKSV------LDEPALCLLCGRLCSP 1927 (2029)
Q Consensus 1900 ~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1927 (2029)
+.+.+||.|+.. .+.++.|..||+++|+
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 456799999974 5899999999998877
No 53
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.59 E-value=3.9 Score=41.98 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=0.0
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVSS 1446 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~S 1446 (2029)
...|||.-|..|...++..
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------
T ss_pred cCCcCceEcHHHHHHHHHc
Confidence 4689999999999998653
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.94 E-value=6.6 Score=40.13 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
...|||..|..|.+++++
T Consensus 94 ~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLK 111 (133)
T ss_dssp EETTSBEEEHHHHHHHHH
T ss_pred eCCCCChhhHHHHHHHHH
Confidence 668999999999999874
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=46.39 E-value=2.1 Score=43.35 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=23.5
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~ 1479 (2029)
+..|||..+..|+.++++ .+.+.||+||.--
T Consensus 30 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 30 TLPCNHTLCKPCFQSTVE---------------------KASLCCPFCRRRV 60 (115)
T ss_dssp ECTTSCEECHHHHCCCCC---------------------TTTSBCTTTCCBC
T ss_pred EcCCCCHHhHHHHHHHHh---------------------HCcCCCCCCCccc
Confidence 448999999999976642 1347899999844
No 56
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=46.21 E-value=5.8 Score=42.33 Aligned_cols=30 Identities=37% Similarity=0.791 Sum_probs=24.2
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
+..|||.-+..|..+++.. +.+.||+||.-
T Consensus 93 ~~~CgH~fC~~Ci~~~~~~---------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 93 TTECFHNVCKDCLQRSFKA---------------------QVFSCPACRHD 122 (150)
T ss_dssp ECTTSCEEEHHHHHHHHHT---------------------TCCBCTTTCCB
T ss_pred EcCCCCchhHHHHHHHHHh---------------------CCCcCCCCCcc
Confidence 5689999999999999752 23569999974
No 57
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.11 E-value=4 Score=35.64 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=15.6
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|..|+.++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 30 IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCSSCCCCCHHHHHHHTT
T ss_pred eCCCCCccCHHHHHHHHH
Confidence 457999999999999864
No 58
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=45.49 E-value=7.2 Score=33.44 Aligned_cols=39 Identities=23% Similarity=0.596 Sum_probs=28.0
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000151 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2029)
Q Consensus 115 ~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2029)
...|+.--. ....|-|.+|+ ..+|..|.. +.|+||++.-
T Consensus 6 ~~~C~~H~~-e~l~lfC~~~~----~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 6 TVYCNVHKH-EPLVLFCESCD----TLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp SCBCSSSTT-CBCCEEETTTT----EEECHHHHH-TTTTTCCEEE
T ss_pred CCcCcCCCC-CCEEEEeCCCC----EEEecccCC-CcCCCCceec
Confidence 455754422 34668899886 468999988 6999999864
No 59
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=45.35 E-value=9 Score=35.54 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=29.9
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000151 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2029)
Q Consensus 115 ~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2029)
...|..- ....-|-|.+|+. .+|..|+. +.|++|++.-
T Consensus 18 ~~~C~~H--~e~l~lfC~~d~~----~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVH--GKTMELFCQTDQT----CICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTT--CCBCCEEESSSCC----EECHHHHH-TTTSSSCEEE
T ss_pred cCcCccc--CCceEEEeCCCCe----EEccccCC-CCCCCCCEec
Confidence 4678777 2567788998873 68999998 9999999864
No 60
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=44.55 E-value=4.6 Score=38.43 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=30.4
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeecccccccC
Q 000151 1885 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1927 (2029)
Q Consensus 1885 ~Li~LP~~~~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~ 1927 (2029)
+||+=|..| +...+||.|+.. ...++.|..||+++|+
T Consensus 21 ~Lv~~PnS~------Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 21 RLIQAPNSY------FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp SSSCCCSCC------EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeCCCCc------EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 577888654 467899999874 5889999999998887
No 61
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.49 E-value=13 Score=33.24 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=30.5
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000151 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2029)
Q Consensus 116 ~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~ 161 (2029)
..|..-- ...-|-|.+|+. .+|..|+..+.|++|++.-..
T Consensus 15 ~~C~~H~--e~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTC--CBCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhC--ceeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence 5687664 356677887763 689999999999999986543
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=44.31 E-value=6.2 Score=40.36 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=16.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..|.+|+.++++
T Consensus 29 ~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 29 STECGHVFCSQCLRDSLK 46 (133)
T ss_dssp EETTCCEEEHHHHHHHHT
T ss_pred ecCCCChhhHHHHHHHHH
Confidence 678999999999999974
No 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=43.05 E-value=5.5 Score=39.77 Aligned_cols=18 Identities=28% Similarity=0.750 Sum_probs=15.4
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||.-|..|+.++++
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 31 IIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp ETTTCCEEEHHHHHHHHT
T ss_pred eCCCCChhhHHHHHHHHH
Confidence 348999999999998864
No 64
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=42.58 E-value=6.6 Score=37.47 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=29.4
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEE
Q 000151 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 160 (2029)
Q Consensus 116 ~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~ 160 (2029)
..|..-= ....-|-|.+|+ ..+|..|+..+.|+||++.-.
T Consensus 19 ~~C~~H~-~e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 19 ITCLDHE-NEKVNMYCVSDD----QLICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCCSSCS-SSCCCEEETTTT----EEECHHHHHTSTTTTCCBCCC
T ss_pred CcCcCcC-CccccEEcCCCC----ceEcccCcCCCCCCCCCccCH
Confidence 4575431 123778899987 479999999999999997543
No 65
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.23 E-value=7.7 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=16.1
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||.-|..|++++++
T Consensus 35 ~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 35 TIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp ECTTSSEECHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHH
Confidence 448999999999999986
No 66
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=35.12 E-value=17 Score=32.86 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.9
Q ss_pred ccccccccCCceeEEeccCCC
Q 000151 116 GVCGAVWGNNDIAYRCRTCEH 136 (2029)
Q Consensus 116 ~~Cg~v~~~ge~~y~C~~C~~ 136 (2029)
.+||+.|+-|-..|+|++|.+
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 578999988999999999986
No 67
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=34.11 E-value=12 Score=33.77 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=28.4
Q ss_pred CccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000151 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2029)
Q Consensus 115 ~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2029)
...|..-=. ....|-|.+|+ ..+|..|...+.|++|++.-
T Consensus 8 ~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 8 HPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCSSCTT-CCCCSEESSSC----CCCCSHHHHSSSTTSSCEEC
T ss_pred CCcCcCcCC-CccceEcCcCC----ceeCccccCCCcCCCCCeeC
Confidence 345655411 23566788887 45899999989999999854
No 68
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=33.00 E-value=12 Score=38.00 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=15.7
Q ss_pred ccccChHhhHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVS 1445 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~ 1445 (2029)
+..|||..+..|+..++.
T Consensus 33 ~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 33 QTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred ECCcCChhhHHHHHHHHh
Confidence 457999999999999875
No 69
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=32.94 E-value=11 Score=31.98 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=28.1
Q ss_pred ccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000151 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2029)
Q Consensus 116 ~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~ 159 (2029)
..|..--+ ....+-|.+|. ..+|..|...+.|++|++..
T Consensus 7 ~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 7 PMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp CBCSSSTT-SBCCEEETTTT----EEECHHHHHHSTTTTSCEEE
T ss_pred CcCCCCCC-ccccEEcCCCC----eeEcccccCCCcCCCCcEEe
Confidence 45664321 23668899886 47999999888999999754
No 70
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.47 E-value=11 Score=36.12 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=25.0
Q ss_pred cccCCchhHHHHHHHHhhcccCCCCCC------CCCceeeecccccccCC
Q 000151 1885 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1928 (2029)
Q Consensus 1885 ~Li~LP~~~~~l~~~~~~~~C~~c~~~------~~~paiCL~CG~~~~~~ 1928 (2029)
+||+-|+.| +...+||.|+.. ...++.|..||+++|+-
T Consensus 25 ~Lv~~PnS~------Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 25 RLVQSPNSF------FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------C------EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred eeccCCCCc------EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 477777654 467899999864 57899999999998874
No 71
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=30.96 E-value=10 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=25.3
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccceecCC
Q 000151 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2029)
Q Consensus 1428 ~ssCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LPil 1486 (2029)
+..|||. ....|..+. ..||+||+--..++.+.
T Consensus 39 ~~pCgH~~~C~~C~~~~--------------------------~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 39 FVPCGHLVTCKQCAEAV--------------------------DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp EETTCCBCCCHHHHTTC--------------------------SBCTTTCCBCSEEEECB
T ss_pred EcCCCChhHHHHhhhcC--------------------------ccCCCcCcCccCcEEEe
Confidence 4589999 999996532 67999998776666553
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.99 E-value=25 Score=34.05 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=27.7
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccc--ccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPV--CRQLA 1479 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPL--CksL~ 1479 (2029)
+..|||.--.+||..|+++--.. +. ...+.||. |+..+
T Consensus 23 l~~CgH~FC~~Cl~~~~~~~i~~--------g~------~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 23 IAQCQCIFCTLCLKQYVELLIKE--------GL------ETAISCPDAACPKQG 62 (94)
T ss_dssp ETTTTEEEEHHHHHHHHHHHHHH--------CS------CCCEECSCTTCSSCC
T ss_pred cCCCCCcccHHHHHHHHHHHhhc--------CC------cccccCccccCCCCC
Confidence 34799999999999999865321 11 13578999 99764
No 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=28.98 E-value=19 Score=36.22 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.5
Q ss_pred ccccChHhhHHHHHHHHHH
Q 000151 1428 LSSCGHAVHQGCLDRYVSS 1446 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~S 1446 (2029)
+..|||.-|..|+.+++..
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHH
T ss_pred EcCCCCcccHHHHHHHHhH
Confidence 4689999999999999764
No 74
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.73 E-value=14 Score=29.75 Aligned_cols=8 Identities=50% Similarity=1.609 Sum_probs=7.0
Q ss_pred cccccccc
Q 000151 1470 FLCPVCRQ 1477 (2029)
Q Consensus 1470 FLCPLCks 1477 (2029)
|+||+|+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 99999963
No 75
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.64 E-value=10 Score=33.77 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=29.8
Q ss_pred CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeE
Q 000151 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2029)
Q Consensus 114 ~~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~ 158 (2029)
....|..-- ....|-|.+|+ ..+|..|+..+.|++|++.
T Consensus 17 ~~~~C~~H~--e~L~lfC~~d~----~~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKHQ--EALKLFCEVDE----EAICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTTC--CBCCEEETTTT----EEECHHHHHSHHHHSSCEE
T ss_pred ccCcChhhC--ceeeEEcCCCC----cEEecccCCCCCCCCCcEe
Confidence 345687773 45677788765 5699999999999999874
No 76
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.30 E-value=62 Score=30.32 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCchHHHHHHHHhcCCchhhhchh---------hHHHHhhhCCC
Q 000151 2 EIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYS---------GIVNFAKNDKS 46 (2029)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~ 46 (2029)
|||.|..++...+-+..+++|+..|++++...+- .++.|+-+|++
T Consensus 16 d~d~pl~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 16 DIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCCSCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CccCCCCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4566654444446677889999999999886543 46677776654
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=26.92 E-value=17 Score=43.82 Aligned_cols=39 Identities=21% Similarity=0.560 Sum_probs=28.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
...|||.-|..|..+.+++.... |. .++.-. =.||+||+
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~s---Rq------SFnvi~--G~CPyCr~ 369 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDG---KT------FLEVSF--GQCPFCKA 369 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSS---SC------TTTCCE--EECTTTCC
T ss_pred CCccCCccchHHHHHHHHhCCCc---cc------cccccC--CCCCCCCC
Confidence 35899999999999999998632 22 223222 36999998
No 78
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=25.46 E-value=28 Score=42.74 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=27.9
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccceecC
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LPi 1485 (2029)
...|||..|..|...++.+ + .-.||+||+--....++
T Consensus 347 ~lpCGH~FC~~Ci~~wl~~-------~--------------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTSWQES-------E--------------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp EETTCCEECHHHHHHHHHH-------T--------------CSBCTTTCCBCCEEEEC
T ss_pred EeCCCChhhHHHHHHHHhc-------C--------------CCCCCCCCCccCCceeE
Confidence 6789999999999888653 0 12599999876665544
No 79
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.42 E-value=37 Score=31.15 Aligned_cols=35 Identities=37% Similarity=0.712 Sum_probs=25.3
Q ss_pred cCCceeEEeccCCCCCCccccccccCC----CCCCCceeEEE
Q 000151 123 GNNDIAYRCRTCEHDPTCAICVPCFQN----GNHKEHDYSII 160 (2029)
Q Consensus 123 ~~ge~~y~C~~C~~d~t~~lC~~CF~~----~~H~~H~~~~~ 160 (2029)
-+.+.++||..|.-| ..|..||+. .+-++|+..-+
T Consensus 14 CneDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 14 CNEDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp TCSCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred eCCCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 346788999999876 789999964 23356776544
No 80
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.29 E-value=7.7 Score=39.38 Aligned_cols=26 Identities=27% Similarity=0.717 Sum_probs=21.6
Q ss_pred cccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCccccccccccc
Q 000151 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2029)
Q Consensus 1429 ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL 1478 (2029)
..|||.-+..|..+++. ..||+||.-
T Consensus 39 ~~CgH~fC~~Ci~~~~~------------------------~~CP~Cr~~ 64 (117)
T 1jm7_B 39 GGCEHIFCSNCVSDCIG------------------------TGCPVCYTP 64 (117)
T ss_dssp CSSSCCBCTTTGGGGTT------------------------TBCSSSCCB
T ss_pred CCCCCHHHHHHHHHHhc------------------------CCCcCCCCc
Confidence 38999999999987743 569999975
No 81
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.92 E-value=25 Score=32.64 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=24.5
Q ss_pred ccccChH-hhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccccccceecCC
Q 000151 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2029)
Q Consensus 1428 ~ssCGH~-MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LPil 1486 (2029)
+.-|||. ....|.++ ...||+||.--...+++.
T Consensus 40 ~~pCgH~~~C~~C~~~--------------------------~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 40 FVPCGHLVTCKQCAEA--------------------------VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp CSSSCCCCBCHHHHHH--------------------------CSBCTTTCCBCCCCCBCC
T ss_pred EecCCCHHHHHHHhhC--------------------------CCCCccCCceecCcEEEe
Confidence 5579999 99999831 046999998766666553
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=22.19 E-value=15 Score=38.64 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=23.4
Q ss_pred ccccChHhhHHHHHHHHHHHHHhhhccccccCCcccCCCCcccccccccc
Q 000151 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2029)
Q Consensus 1428 ~ssCGH~MH~~C~~~Y~~Sl~~r~~~r~~~er~h~~d~e~gEFLCPLCks 1477 (2029)
...|||.-+..|+.++++ .+.+.||+||.
T Consensus 46 ~~~CgH~FC~~Ci~~~~~---------------------~~~~~CP~Cr~ 74 (141)
T 3knv_A 46 QAQCGHRYCSFCLASILS---------------------SGPQNCAACVH 74 (141)
T ss_dssp ECTTSCEEEHHHHHHHGG---------------------GSCEECHHHHH
T ss_pred ECCCCCccCHHHHHHHHh---------------------cCCCCCCCCCC
Confidence 568999999999999863 02257999997
Done!