Query 000152
Match_columns 2027
No_of_seqs 362 out of 1503
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 20:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0163 Myosin class VI heavy 99.0 6.9E-10 1.5E-14 136.0 11.6 25 839-863 1167-1191(1259)
2 KOG1029 Endocytic adaptor prot 98.8 2.6E-07 5.5E-12 114.8 19.4 35 558-592 309-346 (1118)
3 PF07001 BAT2_N: BAT2 N-termin 98.6 2.9E-07 6.4E-12 101.5 10.6 69 8-102 16-84 (189)
4 PTZ00121 MAEBL; Provisional 98.5 4.3E-06 9.2E-11 109.1 18.7 9 83-91 604-612 (2084)
5 KOG1029 Endocytic adaptor prot 98.4 7.3E-06 1.6E-10 102.4 18.0 32 625-656 386-417 (1118)
6 PTZ00121 MAEBL; Provisional 98.4 7.7E-06 1.7E-10 106.8 18.5 9 318-326 832-840 (2084)
7 KOG4364 Chromatin assembly fac 98.2 0.0001 2.2E-09 91.9 22.9 44 808-853 491-536 (811)
8 PTZ00266 NIMA-related protein 98.1 3.8E-05 8.2E-10 101.4 15.4 24 933-956 781-804 (1021)
9 PTZ00266 NIMA-related protein 98.0 4.5E-05 9.7E-10 100.7 14.9 15 52-66 25-39 (1021)
10 PRK09510 tolA cell envelope in 97.9 0.00073 1.6E-08 82.0 19.6 7 884-890 363-369 (387)
11 KOG4364 Chromatin assembly fac 97.8 0.00042 9E-09 86.7 16.2 21 1272-1292 750-770 (811)
12 KOG2891 Surface glycoprotein [ 97.7 0.0019 4.1E-08 74.7 18.2 8 388-395 157-164 (445)
13 COG3064 TolA Membrane protein 97.5 0.0047 1E-07 72.7 18.6 9 913-921 362-370 (387)
14 COG3064 TolA Membrane protein 97.4 0.0028 6E-08 74.6 15.8 13 839-851 327-339 (387)
15 KOG4661 Hsp27-ERE-TATA-binding 97.4 0.0064 1.4E-07 75.3 19.4 43 833-879 769-814 (940)
16 KOG0163 Myosin class VI heavy 97.4 0.0022 4.7E-08 81.1 14.9 30 849-878 1213-1242(1259)
17 PRK09510 tolA cell envelope in 97.4 0.0099 2.1E-07 72.6 19.8 20 902-921 349-368 (387)
18 KOG2891 Surface glycoprotein [ 97.4 0.0061 1.3E-07 70.7 16.9 12 552-563 276-287 (445)
19 TIGR02794 tolA_full TolA prote 97.3 0.015 3.3E-07 70.1 19.7 9 843-851 290-298 (346)
20 PF05262 Borrelia_P83: Borreli 97.2 0.0062 1.4E-07 76.0 15.8 12 469-480 107-119 (489)
21 KOG0742 AAA+-type ATPase [Post 97.0 0.078 1.7E-06 65.2 21.3 20 721-740 252-271 (630)
22 KOG2072 Translation initiation 96.9 0.17 3.7E-06 65.9 24.1 13 762-774 897-909 (988)
23 KOG4661 Hsp27-ERE-TATA-binding 96.6 0.015 3.3E-07 72.2 11.9 21 235-256 255-275 (940)
24 KOG1144 Translation initiation 96.5 0.0098 2.1E-07 76.1 9.8 34 1101-1142 707-740 (1064)
25 KOG2412 Nuclear-export-signal 96.4 0.13 2.8E-06 64.8 18.5 33 806-838 420-452 (591)
26 PF05262 Borrelia_P83: Borreli 96.4 0.071 1.5E-06 67.0 16.5 12 877-888 477-488 (489)
27 KOG2412 Nuclear-export-signal 96.0 0.19 4.1E-06 63.4 17.0 44 817-860 409-457 (591)
28 PF12037 DUF3523: Domain of un 95.4 1.2 2.5E-05 53.2 19.8 7 537-543 26-32 (276)
29 KOG2072 Translation initiation 95.4 0.15 3.3E-06 66.3 13.3 20 724-743 888-908 (988)
30 PF13904 DUF4207: Domain of un 95.2 0.45 9.8E-06 55.9 15.4 7 548-554 90-96 (264)
31 KOG4817 Unnamed protein [Funct 94.9 0.58 1.3E-05 56.9 15.4 65 8-96 15-79 (468)
32 PF09726 Macoilin: Transmembra 94.6 0.73 1.6E-05 60.6 16.8 9 188-196 196-204 (697)
33 KOG0742 AAA+-type ATPase [Post 94.5 1 2.2E-05 56.1 16.3 7 537-543 70-76 (630)
34 KOG3054 Uncharacterized conser 94.4 0.33 7.1E-06 56.5 11.4 10 758-767 246-255 (299)
35 PRK00106 hypothetical protein; 93.8 2.7 5.8E-05 54.1 18.9 7 767-773 273-279 (535)
36 PF00769 ERM: Ezrin/radixin/mo 93.4 3.7 8.1E-05 48.1 17.8 16 574-589 9-24 (246)
37 TIGR03319 YmdA_YtgF conserved 93.4 3.5 7.6E-05 52.8 19.0 6 768-773 253-258 (514)
38 KOG4722 Zn-finger protein [Gen 93.2 1.6 3.4E-05 53.9 14.6 27 449-476 188-214 (672)
39 KOG3654 Uncharacterized CH dom 90.4 1.4 3.1E-05 55.2 10.4 20 201-220 115-134 (708)
40 PRK12705 hypothetical protein; 90.2 9.3 0.0002 49.2 17.4 13 547-559 21-33 (508)
41 COG4942 Membrane-bound metallo 88.5 19 0.00041 45.6 17.9 8 787-794 358-365 (420)
42 KOG1103 Predicted coiled-coil 86.3 3 6.5E-05 50.7 9.1 87 913-1011 399-491 (561)
43 PRK00409 recombination and DNA 85.9 20 0.00043 48.4 17.3 11 841-851 734-744 (782)
44 KOG3654 Uncharacterized CH dom 85.5 5.1 0.00011 50.7 10.8 17 75-91 17-33 (708)
45 KOG0579 Ste20-like serine/thre 85.0 16 0.00035 48.0 14.9 8 347-354 575-582 (1187)
46 PF02029 Caldesmon: Caldesmon; 84.9 3.6 7.7E-05 52.6 9.4 15 875-889 459-473 (492)
47 TIGR01069 mutS2 MutS2 family p 84.8 22 0.00049 47.9 17.0 13 277-289 217-229 (771)
48 PF12128 DUF3584: Protein of u 84.5 19 0.0004 50.7 16.6 7 1228-1234 1167-1173(1201)
49 PRK00409 recombination and DNA 84.3 21 0.00045 48.3 16.4 12 277-288 222-233 (782)
50 KOG0579 Ste20-like serine/thre 84.0 16 0.00034 48.2 14.2 11 183-193 473-483 (1187)
51 TIGR01069 mutS2 MutS2 family p 83.9 27 0.00058 47.2 17.1 7 844-850 726-732 (771)
52 PF09731 Mitofilin: Mitochondr 82.5 81 0.0018 40.9 20.1 7 319-325 27-33 (582)
53 KOG3634 Troponin [Cytoskeleton 82.1 16 0.00035 44.8 12.7 18 746-763 292-309 (361)
54 PF06637 PV-1: PV-1 protein (P 82.0 66 0.0014 40.5 17.7 8 753-760 410-417 (442)
55 PLN03086 PRLI-interacting fact 81.9 7.8 0.00017 50.4 10.8 11 815-825 184-194 (567)
56 KOG2689 Predicted ubiquitin re 81.4 12 0.00026 44.9 11.2 8 456-463 23-30 (290)
57 PTZ00491 major vault protein; 80.6 33 0.00071 46.7 15.7 10 150-159 198-207 (850)
58 KOG1265 Phospholipase C [Lipid 80.5 77 0.0017 43.4 18.6 15 318-333 752-767 (1189)
59 KOG0161 Myosin class II heavy 80.1 58 0.0013 48.0 18.9 10 185-194 302-311 (1930)
60 PF06637 PV-1: PV-1 protein (P 79.4 39 0.00085 42.3 14.8 9 609-617 296-304 (442)
61 PLN02316 synthase/transferase 78.6 24 0.00053 49.0 14.2 25 767-791 508-534 (1036)
62 KOG2507 Ubiquitin regulatory p 78.0 5.2 0.00011 50.1 7.1 8 907-914 464-471 (506)
63 PF06098 Radial_spoke_3: Radia 77.8 21 0.00045 43.4 11.8 15 335-349 2-16 (291)
64 KOG1265 Phospholipase C [Lipid 77.7 56 0.0012 44.6 16.3 10 399-408 795-804 (1189)
65 KOG0681 Actin-related protein 77.6 15 0.00032 47.6 10.9 7 469-475 149-155 (645)
66 PLN02316 synthase/transferase 76.9 35 0.00076 47.6 14.9 6 269-274 122-127 (1036)
67 KOG0994 Extracellular matrix g 76.6 88 0.0019 43.9 17.6 63 162-231 1193-1260(1758)
68 KOG3634 Troponin [Cytoskeleton 75.9 44 0.00096 41.3 13.7 6 723-728 268-273 (361)
69 KOG0982 Centrosomal protein Nu 74.5 2.2E+02 0.0048 36.7 19.2 14 493-506 171-184 (502)
70 KOG0161 Myosin class II heavy 74.1 1E+02 0.0022 45.8 18.5 11 253-263 454-464 (1930)
71 PTZ00491 major vault protein; 72.5 61 0.0013 44.3 15.0 9 150-158 145-153 (850)
72 KOG1103 Predicted coiled-coil 72.3 1.2E+02 0.0025 37.9 15.9 9 784-792 351-359 (561)
73 KOG2689 Predicted ubiquitin re 71.4 35 0.00076 41.3 11.3 6 803-808 254-259 (290)
74 PF04094 DUF390: Protein of un 70.4 95 0.0021 41.8 15.6 7 279-285 321-327 (828)
75 KOG1363 Predicted regulator of 70.3 25 0.00054 45.1 10.6 11 291-301 63-73 (460)
76 PRK04863 mukB cell division pr 69.5 1.7E+02 0.0037 42.8 19.1 11 1288-1298 830-840 (1486)
77 KOG4848 Extracellular matrix-a 69.1 2.4E+02 0.0051 33.2 17.4 12 469-480 71-82 (225)
78 KOG0681 Actin-related protein 67.1 34 0.00073 44.6 10.7 6 281-286 23-28 (645)
79 KOG0982 Centrosomal protein Nu 66.9 2.7E+02 0.0059 35.9 17.8 11 549-559 225-235 (502)
80 COG2433 Uncharacterized conser 65.7 1.4E+02 0.003 39.8 15.6 12 453-464 266-277 (652)
81 KOG0994 Extracellular matrix g 64.6 1.1E+02 0.0024 43.1 14.8 11 52-62 645-655 (1758)
82 PRK12472 hypothetical protein; 64.3 81 0.0018 40.9 13.1 8 515-522 136-143 (508)
83 TIGR02680 conserved hypothetic 64.3 2.6E+02 0.0057 40.5 19.4 6 361-366 57-62 (1353)
84 PRK13428 F0F1 ATP synthase sub 64.2 2.5E+02 0.0053 36.1 17.4 7 841-847 258-264 (445)
85 KOG0996 Structural maintenance 63.1 1.8E+02 0.0039 41.2 16.6 8 495-502 215-222 (1293)
86 KOG3756 Pinin (desmosome-assoc 62.6 4E+02 0.0086 33.4 18.4 6 381-386 58-63 (340)
87 KOG0921 Dosage compensation co 61.4 14 0.0003 50.1 6.2 25 36-60 1204-1232(1282)
88 KOG0933 Structural maintenance 60.4 4.3E+02 0.0094 37.4 19.0 17 537-553 662-678 (1174)
89 PF10168 Nup88: Nuclear pore c 60.2 2.5E+02 0.0055 38.3 17.2 15 81-95 83-97 (717)
90 PF10168 Nup88: Nuclear pore c 60.0 1.1E+02 0.0024 41.5 14.0 9 449-457 395-403 (717)
91 PRK04863 mukB cell division pr 57.7 4.2E+02 0.0091 39.1 19.5 9 868-876 760-768 (1486)
92 KOG0288 WD40 repeat protein Ti 57.6 4.8E+02 0.01 33.8 17.6 15 997-1011 383-397 (459)
93 COG2433 Uncharacterized conser 56.8 1.1E+02 0.0024 40.6 12.6 6 308-313 99-104 (652)
94 KOG4572 Predicted DNA-binding 56.5 2E+02 0.0044 39.3 14.8 15 69-84 229-243 (1424)
95 TIGR02680 conserved hypothetic 56.3 3.2E+02 0.0069 39.8 18.1 11 1496-1506 1246-1256(1353)
96 PRK12472 hypothetical protein; 55.5 2.1E+02 0.0045 37.4 14.5 9 908-916 480-488 (508)
97 COG0711 AtpF F0F1-type ATP syn 53.9 3.5E+02 0.0076 30.3 14.5 87 589-675 35-121 (161)
98 PF05667 DUF812: Protein of un 53.6 4E+02 0.0086 35.8 17.1 9 187-195 47-55 (594)
99 KOG2441 mRNA splicing factor/p 53.6 62 0.0014 40.8 9.4 49 730-785 395-444 (506)
100 TIGR02169 SMC_prok_A chromosom 53.4 5.4E+02 0.012 35.7 19.1 9 779-787 573-581 (1164)
101 PRK03918 chromosome segregatio 53.3 6.3E+02 0.014 34.5 19.4 12 347-358 30-41 (880)
102 KOG0976 Rho/Rac1-interacting s 53.1 4.3E+02 0.0094 36.5 16.8 13 1534-1546 1197-1209(1265)
103 COG5269 ZUO1 Ribosome-associat 50.5 1.7E+02 0.0037 35.8 11.9 12 724-735 341-352 (379)
104 PF15359 CDV3: Carnitine defic 48.5 44 0.00096 36.6 6.4 63 116-193 59-123 (129)
105 KOG0288 WD40 repeat protein Ti 48.2 7.5E+02 0.016 32.2 17.9 18 725-742 158-175 (459)
106 KOG4722 Zn-finger protein [Gen 47.9 6E+02 0.013 32.9 16.3 16 189-204 82-97 (672)
107 KOG3915 Transcription regulato 47.5 1.3E+02 0.0028 38.8 10.8 20 36-55 71-90 (641)
108 KOG0612 Rho-associated, coiled 46.4 7.6E+02 0.017 35.8 18.3 15 1315-1329 1205-1220(1317)
109 KOG0976 Rho/Rac1-interacting s 46.2 9E+02 0.02 33.8 18.1 23 1269-1296 971-993 (1265)
110 KOG0612 Rho-associated, coiled 45.7 4E+02 0.0086 38.4 15.6 28 423-450 308-335 (1317)
111 KOG0250 DNA repair protein RAD 45.2 6.2E+02 0.014 36.2 17.2 15 280-295 497-512 (1074)
112 PF04111 APG6: Autophagy prote 45.2 4E+02 0.0086 32.9 14.4 7 717-723 166-172 (314)
113 KOG2441 mRNA splicing factor/p 45.0 39 0.00085 42.5 6.0 7 259-265 55-61 (506)
114 KOG0996 Structural maintenance 44.5 8E+02 0.017 35.5 18.0 6 1228-1233 1168-1173(1293)
115 KOG3973 Uncharacterized conser 44.1 38 0.00081 42.0 5.6 29 71-99 310-338 (465)
116 COG1196 Smc Chromosome segrega 42.7 9E+02 0.02 34.8 19.0 17 859-875 601-617 (1163)
117 KOG2129 Uncharacterized conser 42.3 9.1E+02 0.02 31.5 23.3 62 864-927 471-536 (552)
118 KOG3915 Transcription regulato 41.1 1.3E+02 0.0029 38.7 9.6 8 177-184 178-185 (641)
119 PF00901 Orbi_VP5: Orbivirus o 35.9 1.2E+03 0.026 31.1 17.9 18 551-568 89-106 (508)
120 KOG3973 Uncharacterized conser 35.0 27 0.00058 43.2 2.6 20 36-55 441-460 (465)
121 KOG2505 Ankyrin repeat protein 34.0 1.7E+02 0.0037 38.3 9.1 8 213-220 103-110 (591)
122 PRK14473 F0F1 ATP synthase sub 33.8 6.9E+02 0.015 27.6 16.7 122 586-707 34-155 (164)
123 KOG0250 DNA repair protein RAD 32.8 1.4E+03 0.031 32.9 17.7 31 887-918 617-650 (1074)
124 PF12004 DUF3498: Domain of un 32.6 15 0.00032 47.4 0.0 8 379-386 236-243 (495)
125 KOG0345 ATP-dependent RNA heli 32.1 1.9E+02 0.0041 37.9 9.1 14 374-387 350-363 (567)
126 PF06658 DUF1168: Protein of u 31.4 3.3E+02 0.0071 30.6 9.8 16 528-543 22-38 (142)
127 KOG0345 ATP-dependent RNA heli 30.4 2.2E+02 0.0047 37.3 9.2 8 309-316 170-177 (567)
128 KOG0249 LAR-interacting protei 30.0 1.6E+03 0.035 31.3 16.8 13 912-924 440-452 (916)
129 PLN03188 kinesin-12 family pro 29.7 1.8E+03 0.039 32.6 18.0 22 407-428 671-692 (1320)
130 KOG3878 Protein involved in ma 28.5 1.2E+03 0.026 29.8 14.4 7 768-774 301-307 (469)
131 PLN03188 kinesin-12 family pro 27.2 1.8E+03 0.038 32.8 17.3 12 70-81 65-76 (1320)
132 COG5269 ZUO1 Ribosome-associat 27.0 8.2E+02 0.018 30.4 12.5 12 271-282 16-27 (379)
133 KOG0804 Cytoplasmic Zn-finger 26.7 1.1E+03 0.024 31.0 14.2 113 595-707 329-443 (493)
134 KOG0577 Serine/threonine prote 26.1 1.9E+03 0.041 30.4 17.3 14 261-274 210-223 (948)
135 COG0419 SbcC ATPase involved i 26.0 2E+03 0.043 30.6 19.3 11 349-359 34-44 (908)
136 PF03154 Atrophin-1: Atrophin- 24.2 44 0.00096 45.9 2.1 8 903-910 791-798 (982)
137 KOG0249 LAR-interacting protei 23.3 1.8E+03 0.039 30.8 15.6 21 1486-1506 816-836 (916)
138 PF04615 Utp14: Utp14 protein; 22.5 8.7E+02 0.019 33.2 13.2 48 1098-1145 583-632 (735)
139 KOG3598 Thyroid hormone recept 21.9 2.1E+02 0.0045 41.4 7.4 119 574-692 2089-2208(2220)
140 COG4499 Predicted membrane pro 20.6 2.3E+02 0.0049 36.3 6.8 8 549-556 348-355 (434)
141 PF00901 Orbi_VP5: Orbivirus o 20.1 2.2E+03 0.047 28.8 16.9 10 721-730 306-315 (508)
No 1
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=99.05 E-value=6.9e-10 Score=136.04 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=23.0
Q ss_pred ccCCccccCCCCCccccccccCccc
Q 000152 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (2027)
Q Consensus 839 ~~p~~W~apgDGd~igRq~E~dSd~ 863 (2027)
.+.+|||+||||+||.|||++|++-
T Consensus 1167 ~k~gmWyaHFdGq~I~RQm~l~~~k 1191 (1259)
T KOG0163|consen 1167 TKRGMWYAHFDGQWIARQMELHPDK 1191 (1259)
T ss_pred CccceEEEecCcHHHHhhheecCCC
Confidence 6789999999999999999999863
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.6e-07 Score=114.78 Aligned_cols=35 Identities=40% Similarity=0.548 Sum_probs=25.1
Q ss_pred hcccccCchhhhhHH---HHHHHHHHHHHHHHHHHHHH
Q 000152 558 LKQTDFHDPVRESFE---AELERVQKMQEQERQRIIEE 592 (2027)
Q Consensus 558 lkq~e~EeKrREe~E---aELERreKeqEEERRReEEE 592 (2027)
.....||+|++++++ +||+|+++.++++.+|+.++
T Consensus 309 P~~~TFEDKrkeNy~kGqaELerRRq~leeqqqreree 346 (1118)
T KOG1029|consen 309 PAPVTFEDKRKENYEKGQAELERRRQALEEQQQREREE 346 (1118)
T ss_pred CCCcchhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999998 88887777766665555443
No 3
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.56 E-value=2.9e-07 Score=101.48 Aligned_cols=69 Identities=35% Similarity=0.485 Sum_probs=47.8
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000152 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2027)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2027)
.||.++|||..|--.+.--+ -....-..||.+|++= +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~q------------------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEPQ------------------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCccccc------------------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 38999999999933332210 0122237799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCC
Q 000152 88 ERFDSSGSNGGPAGG 102 (2027)
Q Consensus 88 ~~~d~~~~~~~~~~~ 102 (2027)
.++|++-.. +|.+|
T Consensus 71 ~GnDpnv~l-VP~~G 84 (189)
T PF07001_consen 71 KGNDPNVSL-VPKGG 84 (189)
T ss_pred cCCCCCcee-ecCCC
Confidence 999977766 56533
No 4
>PTZ00121 MAEBL; Provisional
Probab=98.46 E-value=4.3e-06 Score=109.08 Aligned_cols=9 Identities=56% Similarity=0.663 Sum_probs=5.5
Q ss_pred ccccccccC
Q 000152 83 LRKEHERFD 91 (2027)
Q Consensus 83 lrkeh~~~d 91 (2027)
--+.-+|||
T Consensus 604 q~~~m~rfd 612 (2084)
T PTZ00121 604 QQKFMERFD 612 (2084)
T ss_pred HHHHHHhcC
Confidence 345666776
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=7.3e-06 Score=102.44 Aligned_cols=32 Identities=38% Similarity=0.369 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000152 625 TREAVWRAEQEQLEATRKAEEQRIAREEERQR 656 (2027)
Q Consensus 625 rRErEErEEeEReEaERREEEERrReEEErRR 656 (2027)
+|+++++++.+++|++|++.|..++.|-|+.|
T Consensus 386 qrEEerkkeie~rEaar~ElEkqRqlewErar 417 (1118)
T KOG1029|consen 386 QREEERKKEIERREAAREELEKQRQLEWERAR 417 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555554444444444433
No 6
>PTZ00121 MAEBL; Provisional
Probab=98.39 E-value=7.7e-06 Score=106.82 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=4.4
Q ss_pred ccccCCCCC
Q 000152 318 AYWEGDFDM 326 (2027)
Q Consensus 318 ~~w~~~fd~ 326 (2027)
|.|+.+|+-
T Consensus 832 pC~e~~~~N 840 (2084)
T PTZ00121 832 PCLEGSFGN 840 (2084)
T ss_pred ccCCCCCCc
Confidence 455555543
No 7
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.25 E-value=0.0001 Score=91.94 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred CcccCCCCCcccccCccccccccc--cccccccccCCccccCCCCCcc
Q 000152 808 RKEFYGGPGIMSSRNYYKAGILEP--HMDEFTVSRGQRWNMSGDGDHY 853 (2027)
Q Consensus 808 r~efyggagFvsK~PY~~gGttD~--hLdDY~~~~p~~W~apgDGd~i 853 (2027)
|..|||.|+--++ .+.++.+-. .+.||.++.+..|-....|.-+
T Consensus 491 RP~YyGTWrKKS~--~VsarrPlAq~~llDYEVdSDeEWEEEepGESl 536 (811)
T KOG4364|consen 491 RPGYYGTWRKKSQ--VVSARRPLAQDPLLDYEVDSDEEWEEEEPGESL 536 (811)
T ss_pred CCccccccccccc--ccccCCcccccccccccccCcccccccCCCccc
Confidence 4678888764333 355544433 5567888888888666555533
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.07 E-value=3.8e-05 Score=101.39 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=13.7
Q ss_pred CCcCCCCCCccccccccccccccc
Q 000152 933 RENECPSPSTFQENEVEYNRLLRS 956 (2027)
Q Consensus 933 ~~~~~p~ps~f~~~~~~~~~~~r~ 956 (2027)
.++.-|+=++=+--++.|+|.-+.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1021)
T PTZ00266 781 KEAVNPICSAEAHYERVYNHGNRG 804 (1021)
T ss_pred hhhccchhccCCchhccccCCccc
Confidence 345555555555566667666554
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.03 E-value=4.5e-05 Score=100.74 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.1
Q ss_pred CCceEEeeccCcccc
Q 000152 52 GGGMLVLSRPRSSQK 66 (2027)
Q Consensus 52 ~ggm~vlsr~r~~~~ 66 (2027)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 445677777665543
No 10
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.86 E-value=0.00073 Score=81.98 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 000152 884 NVHPPYP 890 (2027)
Q Consensus 884 rp~PP~p 890 (2027)
.++|++|
T Consensus 363 a~lP~pP 369 (387)
T PRK09510 363 AKIPKPP 369 (387)
T ss_pred CCCCCCC
Confidence 4444333
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.78 E-value=0.00042 Score=86.72 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=12.4
Q ss_pred CCccceEEEeecccCCCCCCC
Q 000152 1272 QAETPVKLQFGLFSGPSLIPS 1292 (2027)
Q Consensus 1272 ~~e~pv~lqfglfsgpslips 1292 (2027)
+.-++|+-|+-.-.||+--|.
T Consensus 750 ~~~lqv~~qw~y~l~~~~sp~ 770 (811)
T KOG4364|consen 750 DSRLQVKKQWLYKLGLSPSPD 770 (811)
T ss_pred cccccccceeeeeecCCCCCC
Confidence 456677777766666554333
No 12
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.68 E-value=0.0019 Score=74.72 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=4.5
Q ss_pred cccccccc
Q 000152 388 LQKDGFGA 395 (2027)
Q Consensus 388 l~K~w~~a 395 (2027)
|+-.||.-
T Consensus 157 ip~kwf~l 164 (445)
T KOG2891|consen 157 IPCKWFAL 164 (445)
T ss_pred Ccceeeee
Confidence 45557754
No 13
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.0047 Score=72.73 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 000152 913 RHPRVLPPP 921 (2027)
Q Consensus 913 rqprvlppp 921 (2027)
|+-.||+||
T Consensus 362 k~~kiP~pp 370 (387)
T COG3064 362 KTAKIPKPP 370 (387)
T ss_pred HhccCCCCC
Confidence 333344444
No 14
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0028 Score=74.58 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=5.3
Q ss_pred ccCCccccCCCCC
Q 000152 839 SRGQRWNMSGDGD 851 (2027)
Q Consensus 839 ~~p~~W~apgDGd 851 (2027)
.|.-.+-.-.||.
T Consensus 327 ~C~l~ikL~pdGt 339 (387)
T COG3064 327 TCRLRIKLAPDGT 339 (387)
T ss_pred eeEEEEEEcCCcc
Confidence 3433443444444
No 15
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.44 E-value=0.0064 Score=75.27 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=23.3
Q ss_pred ccccccccCCccccCCCCCccccccccC---cccccccccccCCccccCC
Q 000152 833 MDEFTVSRGQRWNMSGDGDHYGRNIEME---SDFHENITERYGDVGWGQG 879 (2027)
Q Consensus 833 LdDY~~~~p~~W~apgDGd~igRq~E~d---Sd~~~n~~erfGdsgW~~s 879 (2027)
--||+.....+-+-|.+|+++......+ +++|-+ + .--+|+..
T Consensus 769 s~DrregSrsmmgd~regqHyp~~~~~hGGp~erHgr--d--srdGwgGy 814 (940)
T KOG4661|consen 769 SNDRREGSRSMMGDYREGQHYPLSGTVHGGPSERHGR--D--SRDGWGGY 814 (940)
T ss_pred ccccccccccccccchhhcccCccCccCCCchhhccC--c--cCCCcccc
Confidence 4456666666666666666666653333 344444 2 22367763
No 16
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.39 E-value=0.0022 Score=81.12 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=18.2
Q ss_pred CCCccccccccCcccccccccccCCccccC
Q 000152 849 DGDHYGRNIEMESDFHENITERYGDVGWGQ 878 (2027)
Q Consensus 849 DGd~igRq~E~dSd~~~n~~erfGdsgW~~ 878 (2027)
.|.+-.|--||-+.=|+..-+|+|+-.+-.
T Consensus 1213 TgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~ 1242 (1259)
T KOG0163|consen 1213 TGLTRKRGAEILEHEFEREWERNGGKAYKN 1242 (1259)
T ss_pred hccccccccccChHHHHHHHHHhCcHHhHh
Confidence 445555656666555555558899766555
No 17
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.37 E-value=0.0099 Score=72.56 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=10.5
Q ss_pred cccccccccccCCCCCCCCC
Q 000152 902 ISSFGRSRYSMRHPRVLPPP 921 (2027)
Q Consensus 902 ~~s~~r~rys~rqprvlppp 921 (2027)
...|||.=.....-.+||+|
T Consensus 349 d~aldrAA~~Aar~a~lP~p 368 (387)
T PRK09510 349 DPALCQAALAAAKTAKIPKP 368 (387)
T ss_pred CHHHHHHHHHHHHcCCCCCC
Confidence 34688854444333445544
No 18
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.36 E-value=0.0061 Score=70.69 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=4.9
Q ss_pred hhhhhhhccccc
Q 000152 552 KKKKDVLKQTDF 563 (2027)
Q Consensus 552 KKKKEelkq~e~ 563 (2027)
.|+.++.++.+.
T Consensus 276 akraeerrqiet 287 (445)
T KOG2891|consen 276 AKRAEERRQIET 287 (445)
T ss_pred HHHHHHHhhhhH
Confidence 344444444433
No 19
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=97.26 E-value=0.015 Score=70.11 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.8
Q ss_pred ccccCCCCC
Q 000152 843 RWNMSGDGD 851 (2027)
Q Consensus 843 ~W~apgDGd 851 (2027)
.+.+..||.
T Consensus 290 ~I~L~pdG~ 298 (346)
T TIGR02794 290 RIRLAPDGT 298 (346)
T ss_pred EEEECCCCC
Confidence 334444443
No 20
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=97.18 E-value=0.0062 Score=76.03 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=6.4
Q ss_pred ccccccccc-ccC
Q 000152 469 QYGSEQYNR-FRG 480 (2027)
Q Consensus 469 ryg~~qynr-YrG 480 (2027)
+.|+-.||- |||
T Consensus 107 A~fit~YNAv~R~ 119 (489)
T PF05262_consen 107 ATFITIYNAVYRG 119 (489)
T ss_pred HHHHHHHHHHHcC
Confidence 455666654 444
No 21
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.078 Score=65.16 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=11.9
Q ss_pred hhhhhhhccccCCCCCCcCC
Q 000152 721 DGERMVERITTSASSDSSGL 740 (2027)
Q Consensus 721 D~ERmVERI~TSSSsDSss~ 740 (2027)
+.+..++.|+|.-+.=-...
T Consensus 252 eRekwl~aInTtf~higgG~ 271 (630)
T KOG0742|consen 252 EREKWLEAINTTFTHIGGGL 271 (630)
T ss_pred HHHHHHHHHhhhHHHhhhHH
Confidence 44556778888765443333
No 22
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.17 Score=65.94 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=8.8
Q ss_pred cCCCCCCcccccc
Q 000152 762 DRGKPFNSWRRDA 774 (2027)
Q Consensus 762 dR~k~~nswrR~~ 774 (2027)
.|+-+.+.|+|-.
T Consensus 897 ~~a~~~~~WrR~a 909 (988)
T KOG2072|consen 897 PRAPEEAEWRRGA 909 (988)
T ss_pred CCCCcchHHhhcc
Confidence 4555677788876
No 23
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.57 E-value=0.015 Score=72.15 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=13.8
Q ss_pred CCCcccccCCCcccCCccccCC
Q 000152 235 DGMSPRLQSGQDVVGSRLRENG 256 (2027)
Q Consensus 235 ~~m~pq~~~~~~~~g~~~~~~~ 256 (2027)
--..|-+.+-+.+.|.+ ++++
T Consensus 255 aeeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 255 AEEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hhccccccccCCccccc-cccc
Confidence 34566677778888876 5444
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0098 Score=76.11 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=16.0
Q ss_pred ccCCCCCcccccchhhhhcccccccCCCCcccceeeeccCce
Q 000152 1101 EDVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFNEGV 1142 (2027)
Q Consensus 1101 ed~~~~~den~~l~~e~~~~hl~~k~~p~~~~~~vlgf~egv 1142 (2027)
.-.|++--.-||.- +.|.-| |+=|-+|||=-.|-
T Consensus 707 VKvieG~GtTIDVi--LvNG~L------~eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 707 VKVIEGHGTTIDVI--LVNGEL------HEGDQIVVCGLQGP 740 (1064)
T ss_pred EEeecCCCceEEEE--EEccee------ccCCEEEEcCCCCc
Confidence 33444446666643 334333 33366666544443
No 25
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.41 E-value=0.13 Score=64.75 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=26.0
Q ss_pred CCCcccCCCCCcccccCcccccccccccccccc
Q 000152 806 VPRKEFYGGPGIMSSRNYYKAGILEPHMDEFTV 838 (2027)
Q Consensus 806 ppr~efyggagFvsK~PY~~gGttD~hLdDY~~ 838 (2027)
||+.--...+.+.|+|||..++.++...++|.+
T Consensus 420 ~Pdv~dlllA~l~KkCP~~VPf~~~~~~Eq~~k 452 (591)
T KOG2412|consen 420 FPDVGDLLLARLHKKCPYVVPFHIVNSTEQYQK 452 (591)
T ss_pred CchHHHHHHHHHHhcCCccccccccCcHHHHHH
Confidence 566666667789999999999888877777753
No 26
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.40 E-value=0.071 Score=67.02 Aligned_cols=12 Identities=0% Similarity=-0.153 Sum_probs=5.9
Q ss_pred cCCCCCCCCCCC
Q 000152 877 GQGRYRGNVHPP 888 (2027)
Q Consensus 877 ~~ssS~~rp~PP 888 (2027)
+.|.-...||.|
T Consensus 477 a~S~~eV~P~T~ 488 (489)
T PF05262_consen 477 AKSEVEVLPFTS 488 (489)
T ss_pred hcCccccCCCCC
Confidence 344555555544
No 27
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.01 E-value=0.19 Score=63.36 Aligned_cols=44 Identities=5% Similarity=-0.033 Sum_probs=28.2
Q ss_pred cccccCccccccccc---cccccccccCCccccCCCCC--ccccccccC
Q 000152 817 IMSSRNYYKAGILEP---HMDEFTVSRGQRWNMSGDGD--HYGRNIEME 860 (2027)
Q Consensus 817 FvsK~PY~~gGttD~---hLdDY~~~~p~~W~apgDGd--~igRq~E~d 860 (2027)
|.+.+.|+--.++|- .|+.+++.||=...++-+.+ ...+.|+|.
T Consensus 409 la~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~~~~~~Eq~~k~mGyk 457 (591)
T KOG2412|consen 409 LAKVILYIWSQFPDVGDLLLARLHKKCPYVVPFHIVNSTEQYQKMMGYK 457 (591)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcCCccccccccCcHHHHHHhhccc
Confidence 446666666666665 77999999976655555544 444555543
No 28
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=95.43 E-value=1.2 Score=53.16 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=4.2
Q ss_pred CCCCCCc
Q 000152 537 FDGRDPF 543 (2027)
Q Consensus 537 fDG~Dpf 543 (2027)
..+|||.
T Consensus 26 ~~~FDP~ 32 (276)
T PF12037_consen 26 ASGFDPE 32 (276)
T ss_pred cCCCCcH
Confidence 3466666
No 29
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.15 Score=66.30 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=10.8
Q ss_pred hhhhccccCCCC-CCcCCCcc
Q 000152 724 RMVERITTSASS-DSSGLHRS 743 (2027)
Q Consensus 724 RmVERI~TSSSs-DSss~NR~ 743 (2027)
+-.++|-.+... ....|.|.
T Consensus 888 a~~~~~s~s~~a~~~~~WrR~ 908 (988)
T KOG2072|consen 888 AGPDAISPSPRAPEEAEWRRG 908 (988)
T ss_pred ccccCCCCCCCCCcchHHhhc
Confidence 455555555533 45566666
No 30
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=95.15 E-value=0.45 Score=55.87 Aligned_cols=7 Identities=14% Similarity=-0.026 Sum_probs=3.1
Q ss_pred hhhhhhh
Q 000152 548 VGVVKKK 554 (2027)
Q Consensus 548 lsaIKKK 554 (2027)
..|+.+|
T Consensus 90 e~Wl~~K 96 (264)
T PF13904_consen 90 EEWLSAK 96 (264)
T ss_pred HHHHHHH
Confidence 4444444
No 31
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=94.91 E-value=0.58 Score=56.92 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=42.3
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCccccccCCccccCCCCCCCcccccc
Q 000152 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (2027)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (2027)
.||--|-||..|--.-.- .+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~~~-----------~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSREP-----------SAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCcCC-----------ccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 588888888888433100 000 122233678877764 1 2223579999999999999
Q ss_pred cccCCCCCC
Q 000152 88 ERFDSSGSN 96 (2027)
Q Consensus 88 ~~~d~~~~~ 96 (2027)
-+.|++-..
T Consensus 71 ~g~dpn~~l 79 (468)
T KOG4817|consen 71 HGSDPNNLL 79 (468)
T ss_pred cCCCCCcee
Confidence 999987543
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.63 E-value=0.73 Score=60.62 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=4.4
Q ss_pred cccccccCC
Q 000152 188 SLQAALPAA 196 (2027)
Q Consensus 188 sl~a~~p~~ 196 (2027)
.|+-+||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 355555544
No 33
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=1 Score=56.07 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=4.2
Q ss_pred CCCCCCc
Q 000152 537 FDGRDPF 543 (2027)
Q Consensus 537 fDG~Dpf 543 (2027)
+.++||.
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 4566665
No 34
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.33 Score=56.50 Aligned_cols=10 Identities=40% Similarity=0.371 Sum_probs=5.5
Q ss_pred cccccCCCCC
Q 000152 758 SGFLDRGKPF 767 (2027)
Q Consensus 758 SSfldR~k~~ 767 (2027)
..+-||||++
T Consensus 246 GVmDDRGKfI 255 (299)
T KOG3054|consen 246 GVMDDRGKFI 255 (299)
T ss_pred eeecCCCceE
Confidence 4445776644
No 35
>PRK00106 hypothetical protein; Provisional
Probab=93.80 E-value=2.7 Score=54.14 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=3.0
Q ss_pred CCccccc
Q 000152 767 FNSWRRD 773 (2027)
Q Consensus 767 ~nswrR~ 773 (2027)
||-.||.
T Consensus 273 fdpvRRe 279 (535)
T PRK00106 273 FDPIRRE 279 (535)
T ss_pred CChHHHH
Confidence 3444444
No 36
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.44 E-value=3.7 Score=48.07 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000152 574 ELERVQKMQEQERQRI 589 (2027)
Q Consensus 574 ELERreKeqEEERRRe 589 (2027)
+++++....+++.++.
T Consensus 9 Ele~rL~q~eee~~~a 24 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRA 24 (246)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.43 E-value=3.5 Score=52.82 Aligned_cols=6 Identities=33% Similarity=0.673 Sum_probs=2.5
Q ss_pred Cccccc
Q 000152 768 NSWRRD 773 (2027)
Q Consensus 768 nswrR~ 773 (2027)
|-.||.
T Consensus 253 dp~rre 258 (514)
T TIGR03319 253 DPVRRE 258 (514)
T ss_pred chHHHH
Confidence 334444
No 38
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=93.21 E-value=1.6 Score=53.92 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=19.5
Q ss_pred CCCCcccccccccCCCCCcccccccccc
Q 000152 449 PWNNSVHSFNSQRAERNPWEQYGSEQYN 476 (2027)
Q Consensus 449 Pw~~~msSys~R~~eRt~dEryg~~qyn 476 (2027)
.|+...+.|..+..||... .|+...-+
T Consensus 188 dwndvladyea~eswrent-a~gdi~ee 214 (672)
T KOG4722|consen 188 DWNDVLADYEAEESWRENT-AQGDIHEE 214 (672)
T ss_pred chhhHHHHHHHHHHHHhcc-hhhhhhcc
Confidence 4888899999999999333 56655443
No 39
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=90.41 E-value=1.4 Score=55.24 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=12.5
Q ss_pred hhhcccchhHhhhccccccc
Q 000152 201 KKQKDGFSQKQKQGMSQELG 220 (2027)
Q Consensus 201 ~k~~~~~~qk~k~~~~~~~~ 220 (2027)
+|.-+.+.-||+|.|+.--+
T Consensus 115 kkkmea~fakqrqklgksaf 134 (708)
T KOG3654|consen 115 KKKMEAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHHHHHhchhhe
Confidence 34445566678777776554
No 40
>PRK12705 hypothetical protein; Provisional
Probab=90.16 E-value=9.3 Score=49.24 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.6
Q ss_pred hhhhhhhhhhhhc
Q 000152 547 LVGVVKKKKDVLK 559 (2027)
Q Consensus 547 llsaIKKKKEelk 559 (2027)
++.++++++...+
T Consensus 21 ~~~~~~~~~~~~~ 33 (508)
T PRK12705 21 LVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666554433
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.51 E-value=19 Score=45.58 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.6
Q ss_pred cccCCCCC
Q 000152 787 DAENGHYS 794 (2027)
Q Consensus 787 d~ENg~~S 794 (2027)
||.||.+|
T Consensus 358 dhG~gy~s 365 (420)
T COG4942 358 DHGGGYHS 365 (420)
T ss_pred EcCCccEE
Confidence 45555433
No 42
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.31 E-value=3 Score=50.67 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCCCCCCccccccCCCCCCCcCCC---CCCccccccccc---ccccccccccccccccccccccCCccccccCCCCCc
Q 000152 913 RHPRVLPPPTLTSMQKPSYRRENECP---SPSTFQENEVEY---NRLLRSESISLAGLDRSEQHNLAQPEIIDVQPESTE 986 (2027)
Q Consensus 913 rqprvlppp~~~~~~~~s~~~~~~~p---~ps~f~~~~~~~---~~~~r~e~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (2027)
+-||.+|||+.+.+-++| .|.+-.| +-|+....-+-- -.-.-.-+..-++|.++||+...|.- ++
T Consensus 399 gcP~~ie~~VpmPsPl~S-~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~~qssyqvginqrf-------ha- 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLMS-IGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPAVQSSYQVGINQRF-------HA- 469 (561)
T ss_pred CCCCCCCCCCCCCCcccc-cccccCCCCcccccCCCCCCCCccccccccccccCChhhhhhhhhcchhhh-------hh-
Confidence 457888887777666633 3433222 222111110000 00000113344678888887544422 11
Q ss_pred hhhhcccccccCccCCCcceeeccC
Q 000152 987 NEEQNLERSTTSRCDSQSSLSVSSA 1011 (2027)
Q Consensus 987 ~e~~~~~r~~t~~~~sqsslsvssp 1011 (2027)
-.|++- ++.-.|-|+|.-.|+|
T Consensus 470 -aRhkf~--aqad~dqqasgl~sp~ 491 (561)
T KOG1103|consen 470 -ARHKFA--AQADMDQQASGLNSPA 491 (561)
T ss_pred -ccchhh--hcccCcccccccCCCc
Confidence 123343 4666777877665544
No 43
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=85.93 E-value=20 Score=48.44 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=5.9
Q ss_pred CCccccCCCCC
Q 000152 841 GQRWNMSGDGD 851 (2027)
Q Consensus 841 p~~W~apgDGd 851 (2027)
...|=+||-|.
T Consensus 734 ~~v~IIHGkGt 744 (782)
T PRK00409 734 GEVLIIHGKGT 744 (782)
T ss_pred CEEEEEcCCCh
Confidence 34455666664
No 44
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=85.48 E-value=5.1 Score=50.72 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=9.7
Q ss_pred CCCCCCCcccccccccC
Q 000152 75 PPPLNLPSLRKEHERFD 91 (2027)
Q Consensus 75 p~plnlpslrkeh~~~d 91 (2027)
+.||---+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 44555445556776665
No 45
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.04 E-value=16 Score=47.99 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.5
Q ss_pred CCCcCCcc
Q 000152 347 RDSETGKV 354 (2027)
Q Consensus 347 r~~e~~k~ 354 (2027)
|.|+.++|
T Consensus 575 ~~~~~~~~ 582 (1187)
T KOG0579|consen 575 RANAVSNI 582 (1187)
T ss_pred hhhhhhhh
Confidence 44444444
No 46
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=84.92 E-value=3.6 Score=52.58 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=8.1
Q ss_pred cccCCCCCCCCCCCC
Q 000152 875 GWGQGRYRGNVHPPY 889 (2027)
Q Consensus 875 gW~~ssS~~rp~PP~ 889 (2027)
-|+...+.++..|.+
T Consensus 459 ~w~~~~~e~~~~~~~ 473 (492)
T PF02029_consen 459 QWLTKTPEGSKSPAP 473 (492)
T ss_pred HhhcCCCCCCCCCCC
Confidence 466665555554433
No 47
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=84.76 E-value=22 Score=47.89 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=7.0
Q ss_pred cCCCCCCeeecCC
Q 000152 277 YFPGPLPLVRLKP 289 (2027)
Q Consensus 277 ~~~gplplvrl~~ 289 (2027)
+|.-|..+|-||-
T Consensus 217 ~~~ep~~~~~ln~ 229 (771)
T TIGR01069 217 FYIEPQAIVKLNN 229 (771)
T ss_pred EEEEcHHHHHHHH
Confidence 4555555565553
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.48 E-value=19 Score=50.68 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=2.7
Q ss_pred hhccccc
Q 000152 1228 LMDHLNA 1234 (2027)
Q Consensus 1228 ~~~~~~a 1234 (2027)
+++-|+.
T Consensus 1167 l~~~~~~ 1173 (1201)
T PF12128_consen 1167 LLDMCNS 1173 (1201)
T ss_pred HHHHHHh
Confidence 3333443
No 49
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.27 E-value=21 Score=48.26 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.8
Q ss_pred cCCCCCCeeecC
Q 000152 277 YFPGPLPLVRLK 288 (2027)
Q Consensus 277 ~~~gplplvrl~ 288 (2027)
+|.-|..+|-||
T Consensus 222 ~y~ep~~~~~ln 233 (782)
T PRK00409 222 LYIEPQSVVELN 233 (782)
T ss_pred EEEEcHHHHHHH
Confidence 444455455444
No 50
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.05 E-value=16 Score=48.17 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=4.8
Q ss_pred cCCCccccccc
Q 000152 183 GEDFPSLQAAL 193 (2027)
Q Consensus 183 gedfpsl~a~~ 193 (2027)
|+-|-++|++.
T Consensus 473 G~~~~s~qs~~ 483 (1187)
T KOG0579|consen 473 GSTFFSPQSSA 483 (1187)
T ss_pred CccccCccccC
Confidence 44444444444
No 51
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.90 E-value=27 Score=47.19 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.4
Q ss_pred cccCCCC
Q 000152 844 WNMSGDG 850 (2027)
Q Consensus 844 W~apgDG 850 (2027)
+=+||-|
T Consensus 726 ~IIHGkG 732 (771)
T TIGR01069 726 LIIHGKG 732 (771)
T ss_pred EEEcCCC
Confidence 3445544
No 52
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=82.48 E-value=81 Score=40.93 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=3.0
Q ss_pred cccCCCC
Q 000152 319 YWEGDFD 325 (2027)
Q Consensus 319 ~w~~~fd 325 (2027)
||++.|+
T Consensus 27 ~~n~~f~ 33 (582)
T PF09731_consen 27 KQNDNFR 33 (582)
T ss_pred hcChHHH
Confidence 4444443
No 53
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=82.14 E-value=16 Score=44.84 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=7.9
Q ss_pred CCCcccccCCCCcccccC
Q 000152 746 MSSRNQFARDNSSGFLDR 763 (2027)
Q Consensus 746 ~VSRVhTPrdidSSfldR 763 (2027)
++.+.+.+--..++..+|
T Consensus 292 v~g~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 292 VTGRWKPPKVQISSKYDR 309 (361)
T ss_pred hcCCCCCceeehhhhhhh
Confidence 344444443333444444
No 54
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=82.00 E-value=66 Score=40.50 Aligned_cols=8 Identities=0% Similarity=-0.226 Sum_probs=3.1
Q ss_pred cCCCCccc
Q 000152 753 ARDNSSGF 760 (2027)
Q Consensus 753 PrdidSSf 760 (2027)
|..+|.+.
T Consensus 410 p~pidp~~ 417 (442)
T PF06637_consen 410 PPPIDPAS 417 (442)
T ss_pred CCCCChHH
Confidence 33344333
No 55
>PLN03086 PRLI-interacting factor K; Provisional
Probab=81.90 E-value=7.8 Score=50.39 Aligned_cols=11 Identities=0% Similarity=-0.420 Sum_probs=5.7
Q ss_pred CCcccccCccc
Q 000152 815 PGIMSSRNYYK 825 (2027)
Q Consensus 815 agFvsK~PY~~ 825 (2027)
..|+|-.|-..
T Consensus 184 gt~vklqP~~~ 194 (567)
T PLN03086 184 GTYAKLQPDGV 194 (567)
T ss_pred CCEEEEeeccC
Confidence 34566555544
No 56
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=12 Score=44.90 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.0
Q ss_pred ccccccCC
Q 000152 456 SFNSQRAE 463 (2027)
Q Consensus 456 Sys~R~~e 463 (2027)
-|++++.+
T Consensus 23 ~~~n~~~e 30 (290)
T KOG2689|consen 23 VYGNRGIE 30 (290)
T ss_pred hhccccHH
Confidence 34333333
No 57
>PTZ00491 major vault protein; Provisional
Probab=80.56 E-value=33 Score=46.66 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.7
Q ss_pred CCcccccCCC
Q 000152 150 DGVGVYVPPS 159 (2027)
Q Consensus 150 ~~~~~~~~~s 159 (2027)
++.|.|+|..
T Consensus 198 t~~gaylP~v 207 (850)
T PTZ00491 198 RTPGAYLPGV 207 (850)
T ss_pred eccccccCCC
Confidence 4466666654
No 58
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.54 E-value=77 Score=43.44 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=8.2
Q ss_pred ccccCC-CCCCCCCCCC
Q 000152 318 AYWEGD-FDMPRPSVLP 333 (2027)
Q Consensus 318 ~~w~~~-fd~~~~~~~p 333 (2027)
+-|+++ |.|. --|||
T Consensus 752 pvy~eepfvF~-KVvLp 767 (1189)
T KOG1265|consen 752 PVYEEEPFVFR-KVVLP 767 (1189)
T ss_pred cccccCCcccc-eeccc
Confidence 446554 5544 44677
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.12 E-value=58 Score=48.00 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=6.0
Q ss_pred CCcccccccc
Q 000152 185 DFPSLQAALP 194 (2027)
Q Consensus 185 dfpsl~a~~p 194 (2027)
||.-|....=
T Consensus 302 ~Y~f~~~~~~ 311 (1930)
T KOG0161|consen 302 DYKFLSNGES 311 (1930)
T ss_pred hhhhhccccC
Confidence 6666666553
No 60
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=79.44 E-value=39 Score=42.32 Aligned_cols=9 Identities=56% Similarity=0.770 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 000152 609 RVAREQEEQ 617 (2027)
Q Consensus 609 RkeREEEER 617 (2027)
+.++|-.+.
T Consensus 296 ~VarENs~L 304 (442)
T PF06637_consen 296 RVARENSDL 304 (442)
T ss_pred HHHHhhhHH
Confidence 333444333
No 61
>PLN02316 synthase/transferase
Probab=78.59 E-value=24 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=13.9
Q ss_pred CCccccccccCCC--CcccccCcccCC
Q 000152 767 FNSWRRDAFESGN--SSTFITQDAENG 791 (2027)
Q Consensus 767 ~nswrR~~~~r~~--SSsF~Pqd~ENg 791 (2027)
-+.|-|-.|-||. .+.|.|+.+.+.
T Consensus 508 ~ev~~~g~~NrWth~~~~~~~~~m~~~ 534 (1036)
T PLN02316 508 PEVWFRGSFNRWTHRLGPLPPQKMVPA 534 (1036)
T ss_pred ceEEEEccccCcCCCCCCCCceeeeec
Confidence 3445555555554 445778766555
No 62
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=78.01 E-value=5.2 Score=50.11 Aligned_cols=8 Identities=50% Similarity=0.567 Sum_probs=3.8
Q ss_pred ccccccCC
Q 000152 907 RSRYSMRH 914 (2027)
Q Consensus 907 r~rys~rq 914 (2027)
|+|--|+.
T Consensus 464 rsr~~~~R 471 (506)
T KOG2507|consen 464 RSRRRMPR 471 (506)
T ss_pred hhhhcCcC
Confidence 55544433
No 63
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=77.79 E-value=21 Score=43.40 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=10.7
Q ss_pred CCCcccccccCCCCC
Q 000152 335 KPAHNVFERWGQRDS 349 (2027)
Q Consensus 335 k~~~~~~~~~gqr~~ 349 (2027)
.|++-|||++=-|||
T Consensus 2 ~~~NiM~D~RV~RGn 16 (291)
T PF06098_consen 2 TYGNIMYDRRVVRGN 16 (291)
T ss_pred CcccccCCCCcCCCC
Confidence 467888887766555
No 64
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.74 E-value=56 Score=44.61 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.3
Q ss_pred CCCCCCcccc
Q 000152 399 GDNRNGICER 408 (2027)
Q Consensus 399 gneR~GigvR 408 (2027)
.+++-.||+|
T Consensus 795 ~~GYrhv~LR 804 (1189)
T KOG1265|consen 795 NAGYRHVCLR 804 (1189)
T ss_pred cCcceeEEec
Confidence 3344444444
No 65
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=77.56 E-value=15 Score=47.63 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=3.4
Q ss_pred ccccccc
Q 000152 469 QYGSEQY 475 (2027)
Q Consensus 469 ryg~~qy 475 (2027)
.||++.|
T Consensus 149 ~yGIDsl 155 (645)
T KOG0681|consen 149 AYGIDSL 155 (645)
T ss_pred eechhhH
Confidence 4555543
No 66
>PLN02316 synthase/transferase
Probab=76.85 E-value=35 Score=47.56 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=2.2
Q ss_pred Hhhhcc
Q 000152 269 EQVRKQ 274 (2027)
Q Consensus 269 e~~rk~ 274 (2027)
|+.||+
T Consensus 122 ~~~~~~ 127 (1036)
T PLN02316 122 ENLRKR 127 (1036)
T ss_pred HHHHHH
Confidence 333333
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.58 E-value=88 Score=43.91 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=33.4
Q ss_pred cCCCCCCccCCCccccccccccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCC
Q 000152 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFN 231 (2027)
Q Consensus 162 ~~~~~~~~~~~~~~e~~~vlrgedfpsl~a~~p~~~~~~~--k~~~~~~---qk~k~~~~~~~~~~e~~~~~~~~ 231 (2027)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.+
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~ 1260 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITN 1260 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 566666555555554322 124556655555554 2222222 37777777777766665554443
No 68
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=75.90 E-value=44 Score=41.29 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.4
Q ss_pred hhhhhc
Q 000152 723 ERMVER 728 (2027)
Q Consensus 723 ERmVER 728 (2027)
..+.+|
T Consensus 268 keL~eR 273 (361)
T KOG3634|consen 268 KELNER 273 (361)
T ss_pred HHHHHH
Confidence 334444
No 69
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.47 E-value=2.2e+02 Score=36.71 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCC
Q 000152 493 FSSGGRGFPHNDPM 506 (2027)
Q Consensus 493 fslGgkG~~~ndp~ 506 (2027)
-+.+-+.+..|.|.
T Consensus 171 ls~~~~a~~snspt 184 (502)
T KOG0982|consen 171 LSVKKDAERSNSPT 184 (502)
T ss_pred ccccchhhccCchh
Confidence 33444444445444
No 70
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.15 E-value=1e+02 Score=45.81 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=5.8
Q ss_pred ccCCCCCCCCC
Q 000152 253 RENGGINHDTG 263 (2027)
Q Consensus 253 ~~~~~~~~~~g 263 (2027)
+-++-..|.+.
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55555555554
No 71
>PTZ00491 major vault protein; Provisional
Probab=72.45 E-value=61 Score=44.28 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=4.9
Q ss_pred CCcccccCC
Q 000152 150 DGVGVYVPP 158 (2027)
Q Consensus 150 ~~~~~~~~~ 158 (2027)
.++|.|.|-
T Consensus 145 ~gPGtYlPr 153 (850)
T PTZ00491 145 KGPGTYYPR 153 (850)
T ss_pred ECCeeecCC
Confidence 445566654
No 72
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=72.28 E-value=1.2e+02 Score=37.93 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=5.2
Q ss_pred ccCcccCCC
Q 000152 784 ITQDAENGH 792 (2027)
Q Consensus 784 ~Pqd~ENg~ 792 (2027)
+|++-.|||
T Consensus 351 ~~~ak~ngh 359 (561)
T KOG1103|consen 351 LPPAKGNGH 359 (561)
T ss_pred CCcccCCCC
Confidence 455666665
No 73
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.42 E-value=35 Score=41.26 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.3
Q ss_pred CCCCCC
Q 000152 803 GRAVPR 808 (2027)
Q Consensus 803 gRsppr 808 (2027)
+++||+
T Consensus 254 ~t~fPR 259 (290)
T KOG2689|consen 254 HTGFPR 259 (290)
T ss_pred ecCCCc
Confidence 333443
No 74
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=70.42 E-value=95 Score=41.83 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=2.8
Q ss_pred CCCCCee
Q 000152 279 PGPLPLV 285 (2027)
Q Consensus 279 ~gplplv 285 (2027)
+||+|+=
T Consensus 321 lgPtpsG 327 (828)
T PF04094_consen 321 LGPTPSG 327 (828)
T ss_pred CCCCCCC
Confidence 3444433
No 75
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=70.33 E-value=25 Score=45.07 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.7
Q ss_pred CCCcccccccC
Q 000152 291 SDWADDERDTG 301 (2027)
Q Consensus 291 sdwadderdt~ 301 (2027)
..|-+|..+-.
T Consensus 63 ~~~r~~~~~~~ 73 (460)
T KOG1363|consen 63 FNYRDDNVDVS 73 (460)
T ss_pred hcccccCCCcc
Confidence 55555555433
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.51 E-value=1.7e+02 Score=42.78 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=6.1
Q ss_pred CCCCCCCCcee
Q 000152 1288 SLIPSPFPAIQ 1298 (2027)
Q Consensus 1288 slipspvpaiq 1298 (2027)
.+.|.|-|+|+
T Consensus 830 ~f~~~pe~~~~ 840 (1486)
T PRK04863 830 AFEADPEAELR 840 (1486)
T ss_pred hcCCCcHHHHH
Confidence 34556666654
No 77
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=69.13 E-value=2.4e+02 Score=33.16 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=6.2
Q ss_pred cccccccccccC
Q 000152 469 QYGSEQYNRFRG 480 (2027)
Q Consensus 469 ryg~~qynrYrG 480 (2027)
+|--.+|.+|+-
T Consensus 71 ~y~r~~FgrYGa 82 (225)
T KOG4848|consen 71 AYRRERFGRYGA 82 (225)
T ss_pred HHHHHHHHhhcc
Confidence 444555555553
No 78
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=67.14 E-value=34 Score=44.56 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=3.1
Q ss_pred CCCeee
Q 000152 281 PLPLVR 286 (2027)
Q Consensus 281 plplvr 286 (2027)
+.|||-
T Consensus 23 ~~piVI 28 (645)
T KOG0681|consen 23 TIPIVI 28 (645)
T ss_pred CCcEEE
Confidence 455554
No 79
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.92 E-value=2.7e+02 Score=35.93 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=5.3
Q ss_pred hhhhhhhhhhc
Q 000152 549 GVVKKKKDVLK 559 (2027)
Q Consensus 549 saIKKKKEelk 559 (2027)
.++++|..++.
T Consensus 225 ~flerkv~ele 235 (502)
T KOG0982|consen 225 RFLERKVQELE 235 (502)
T ss_pred HHHHHHHHHhh
Confidence 44555554443
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.67 E-value=1.4e+02 Score=39.76 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=5.9
Q ss_pred cccccccccCCC
Q 000152 453 SVHSFNSQRAER 464 (2027)
Q Consensus 453 ~msSys~R~~eR 464 (2027)
.++-++.++..+
T Consensus 266 vl~~~S~r~~~~ 277 (652)
T COG2433 266 VLDLESRRGIDR 277 (652)
T ss_pred EEeeeccccCCH
Confidence 444455555554
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.64 E-value=1.1e+02 Score=43.08 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=5.8
Q ss_pred CCceEEeeccC
Q 000152 52 GGGMLVLSRPR 62 (2027)
Q Consensus 52 ~ggm~vlsr~r 62 (2027)
+=||+++.+.|
T Consensus 645 ~c~~~~~~dd~ 655 (1758)
T KOG0994|consen 645 RCGMAIPKDDR 655 (1758)
T ss_pred ccccccccccc
Confidence 45565555443
No 82
>PRK12472 hypothetical protein; Provisional
Probab=64.30 E-value=81 Score=40.88 Aligned_cols=8 Identities=13% Similarity=-0.192 Sum_probs=4.1
Q ss_pred CCccCCCC
Q 000152 515 PLLKREEP 522 (2027)
Q Consensus 515 s~~ksEKP 522 (2027)
+++|-.-|
T Consensus 136 SHGCVRLp 143 (508)
T PRK12472 136 SHGCVRMP 143 (508)
T ss_pred CCcccCCC
Confidence 55564444
No 83
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.26 E-value=2.6e+02 Score=40.55 Aligned_cols=6 Identities=50% Similarity=1.049 Sum_probs=3.1
Q ss_pred ccCCCC
Q 000152 361 RVDPFG 366 (2027)
Q Consensus 361 ~~~~~~ 366 (2027)
.+|||+
T Consensus 57 rln~~~ 62 (1353)
T TIGR02680 57 RLEPDG 62 (1353)
T ss_pred ccCCCC
Confidence 445555
No 84
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=64.24 E-value=2.5e+02 Score=36.15 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=2.8
Q ss_pred CCccccC
Q 000152 841 GQRWNMS 847 (2027)
Q Consensus 841 p~~W~ap 847 (2027)
..+|-.+
T Consensus 258 ~~rws~~ 264 (445)
T PRK13428 258 SQRWSAN 264 (445)
T ss_pred hCccCcc
Confidence 3444333
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.14 E-value=1.8e+02 Score=41.24 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 000152 495 SGGRGFPH 502 (2027)
Q Consensus 495 lGgkG~~~ 502 (2027)
+-..|.-+
T Consensus 215 Lk~~gIDl 222 (1293)
T KOG0996|consen 215 LKSHGIDL 222 (1293)
T ss_pred HHhcCCCC
Confidence 34455444
No 86
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=62.56 E-value=4e+02 Score=33.40 Aligned_cols=6 Identities=0% Similarity=-0.324 Sum_probs=2.4
Q ss_pred cccccc
Q 000152 381 MWRASS 386 (2027)
Q Consensus 381 ~Wr~ss 386 (2027)
+|+.+.
T Consensus 58 ~~~lr~ 63 (340)
T KOG3756|consen 58 SLLLRR 63 (340)
T ss_pred hhhhhh
Confidence 444333
No 87
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=61.36 E-value=14 Score=50.08 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=12.0
Q ss_pred CCCCCCCC----CCCCCCCCCCceEEeec
Q 000152 36 HSGYYGSN----RARPTGGGGGGMLVLSR 60 (2027)
Q Consensus 36 ~~g~~~~~----~~~~~~~~~ggm~vlsr 60 (2027)
++|+||.+ ++++|.|.|||.-=.||
T Consensus 1204 gsGGYGgsa~~~~~~~Gagvg~GyrGvsr 1232 (1282)
T KOG0921|consen 1204 GSGGYGGSAPSARANYGAGVGNGYRGVSR 1232 (1282)
T ss_pred CCCCCCCCCCCCCCCccccccCCCccccC
Confidence 44555443 24445555666633333
No 88
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.43 E-value=4.3e+02 Score=37.39 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=8.0
Q ss_pred CCCCCCcccchhhhhhh
Q 000152 537 FDGRDPFSAGLVGVVKK 553 (2027)
Q Consensus 537 fDG~Dpf~~~llsaIKK 553 (2027)
.+|.-++.+.++..+.+
T Consensus 662 TGGs~~~~a~~L~~l~~ 678 (1174)
T KOG0933|consen 662 TGGSRSKGADLLRQLQK 678 (1174)
T ss_pred cCCCCCCcccHHHHHHH
Confidence 44555554444444444
No 89
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.17 E-value=2.5e+02 Score=38.28 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.2
Q ss_pred CcccccccccCCCCC
Q 000152 81 PSLRKEHERFDSSGS 95 (2027)
Q Consensus 81 pslrkeh~~~d~~~~ 95 (2027)
|-+--.|-.+-+.|.
T Consensus 83 ~~f~v~~i~~n~~g~ 97 (717)
T PF10168_consen 83 PLFEVHQISLNPTGS 97 (717)
T ss_pred CceeEEEEEECCCCC
Confidence 445555555544443
No 90
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.02 E-value=1.1e+02 Score=41.49 Aligned_cols=9 Identities=33% Similarity=1.147 Sum_probs=3.9
Q ss_pred CCCCccccc
Q 000152 449 PWNNSVHSF 457 (2027)
Q Consensus 449 Pw~~~msSy 457 (2027)
+|...+..|
T Consensus 395 ~wl~~L~~f 403 (717)
T PF10168_consen 395 PWLSALQEF 403 (717)
T ss_pred ccHHHHHHH
Confidence 344444443
No 91
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.70 E-value=4.2e+02 Score=39.14 Aligned_cols=9 Identities=22% Similarity=0.612 Sum_probs=4.4
Q ss_pred ccccCCccc
Q 000152 868 TERYGDVGW 876 (2027)
Q Consensus 868 ~erfGdsgW 876 (2027)
.-+|++.-|
T Consensus 760 ~~~~~~~~~ 768 (1486)
T PRK04863 760 VVKIADRQW 768 (1486)
T ss_pred eeeecchhh
Confidence 444555455
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.61 E-value=4.8e+02 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=7.9
Q ss_pred cCccCCCcceeeccC
Q 000152 997 TSRCDSQSSLSVSSA 1011 (2027)
Q Consensus 997 t~~~~sqsslsvssp 1011 (2027)
.-+|.|=.+-.|=||
T Consensus 383 g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSP 397 (459)
T ss_pred ccccccccceeEECC
Confidence 445555555555555
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.84 E-value=1.1e+02 Score=40.62 Aligned_cols=6 Identities=50% Similarity=0.983 Sum_probs=2.5
Q ss_pred cccCCC
Q 000152 308 DRDHGF 313 (2027)
Q Consensus 308 ~rd~g~ 313 (2027)
+|.|||
T Consensus 99 Arr~G~ 104 (652)
T COG2433 99 ARRHGI 104 (652)
T ss_pred HHHhCC
Confidence 344443
No 94
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=56.49 E-value=2e+02 Score=39.29 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.3
Q ss_pred CCccccCCCCCCCccc
Q 000152 69 VPKLSVPPPLNLPSLR 84 (2027)
Q Consensus 69 ~~klsvp~plnlpslr 84 (2027)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55566666777 5554
No 95
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.29 E-value=3.2e+02 Score=39.77 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.3
Q ss_pred CcccCCCCcee
Q 000152 1496 GLTSGSRGKRY 1506 (2027)
Q Consensus 1496 g~~sg~rg~~y 1506 (2027)
+..|||.-++-
T Consensus 1246 ~~lSgGek~~~ 1256 (1353)
T TIGR02680 1246 GPASGGERALA 1256 (1353)
T ss_pred cCCCchHHHHH
Confidence 33344444333
No 96
>PRK12472 hypothetical protein; Provisional
Probab=55.46 E-value=2.1e+02 Score=37.43 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=3.8
Q ss_pred cccccCCCC
Q 000152 908 SRYSMRHPR 916 (2027)
Q Consensus 908 ~rys~rqpr 916 (2027)
.||.-+||.
T Consensus 480 ~~~~~~~~~ 488 (508)
T PRK12472 480 QRYPKPQPA 488 (508)
T ss_pred ccCCCCCCC
Confidence 344444443
No 97
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=53.90 E-value=3.5e+02 Score=30.27 Aligned_cols=87 Identities=29% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000152 589 IIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (2027)
Q Consensus 589 eEEEqeReEEEeRKEEEERERkeREEEERrRReEEErRErEErEEeEReEaERREEEERrReEEErRRreEEEEKRKEEE 668 (2027)
..+.+++-.+.....++.++..+...++.+++.++.+++..+-.+..+.+++...++.+.+.+++..++.+..+...+.+
T Consensus 35 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e 114 (161)
T COG0711 35 LDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE 114 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 000152 669 KQKLLEL 675 (2027)
Q Consensus 669 EeKrkEe 675 (2027)
+.+..+.
T Consensus 115 ~~~a~~~ 121 (161)
T COG0711 115 KERALEE 121 (161)
T ss_pred HHHHHHH
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.64 E-value=4e+02 Score=35.83 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.1
Q ss_pred ccccccccC
Q 000152 187 PSLQAALPA 195 (2027)
Q Consensus 187 psl~a~~p~ 195 (2027)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 555555554
No 99
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=53.63 E-value=62 Score=40.82 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=25.8
Q ss_pred ccCCCCCCcCCCcccCCCCcccccCCCCcccccCCCCCCccccccccCCC-Cccccc
Q 000152 730 TTSASSDSSGLHRSFDMSSRNQFARDNSSGFLDRGKPFNSWRRDAFESGN-SSTFIT 785 (2027)
Q Consensus 730 ~TSSSsDSss~NR~le~VSRVhTPrdidSSfldR~k~~nswrR~~~~r~~-SSsF~P 785 (2027)
+.+.+.++....|++ +...+.+|.|.++ ..||..-.+-+--.. ++.|-|
T Consensus 395 ~~~~~~e~qyDqRlF------nq~~g~dSg~~~d-d~ynvYD~~wr~~q~~~siYrp 444 (506)
T KOG2441|consen 395 KPSESGEVQYDQRLF------NQGKGLDSGFADD-DEYNVYDKPWRGAQDISSIYRP 444 (506)
T ss_pred CCCCCCcchhhHHhh------hcccCcccccccc-ccccccccccccCCchhhhhCC
Confidence 335566666666663 3346677777766 445443333333222 455544
No 100
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=53.39 E-value=5.4e+02 Score=35.74 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=5.2
Q ss_pred CCcccccCc
Q 000152 779 NSSTFITQD 787 (2027)
Q Consensus 779 ~SSsF~Pqd 787 (2027)
+.-.|+|-+
T Consensus 573 gr~tflpl~ 581 (1164)
T TIGR02169 573 GRATFLPLN 581 (1164)
T ss_pred CCeeeccHh
Confidence 455677653
No 101
>PRK03918 chromosome segregation protein; Provisional
Probab=53.31 E-value=6.3e+02 Score=34.47 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=7.5
Q ss_pred CCCcCCcccccc
Q 000152 347 RDSETGKVSSSE 358 (2027)
Q Consensus 347 r~~e~~k~~~se 358 (2027)
+.|-+||.+.-+
T Consensus 30 G~nG~GKStil~ 41 (880)
T PRK03918 30 GQNGSGKSSILE 41 (880)
T ss_pred cCCCCCHHHHHH
Confidence 346688876544
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.07 E-value=4.3e+02 Score=36.51 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.4
Q ss_pred CCCCCcccceeee
Q 000152 1534 PRRPRRQRTEFRV 1546 (2027)
Q Consensus 1534 ~r~~~~~rtefrv 1546 (2027)
+++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 3456778999984
No 103
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=50.47 E-value=1.7e+02 Score=35.75 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.6
Q ss_pred hhhhccccCCCC
Q 000152 724 RMVERITTSASS 735 (2027)
Q Consensus 724 RmVERI~TSSSs 735 (2027)
.+...|+..+..
T Consensus 341 ~~a~~i~a~aag 352 (379)
T COG5269 341 QLAADIKAEAAG 352 (379)
T ss_pred HHHHHhhhhhcc
Confidence 344455554443
No 104
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=48.46 E-value=44 Score=36.55 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=33.9
Q ss_pred CCCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCCcCC-CCCCccCCCccccccccc-cCCCccccccc
Q 000152 116 TGWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGT-VGPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (2027)
Q Consensus 116 ~gw~kp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~e~~~vlr-gedfpsl~a~~ 193 (2027)
.=|.|++++.......- +... --...++|||.||.+|-.. .-....+ |==|- =+-||||+||.
T Consensus 59 GPWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 59 GPWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 36999887544444432 1111 1135688999999999322 1111111 01111 24799999874
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.24 E-value=7.5e+02 Score=32.22 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=7.5
Q ss_pred hhhccccCCCCCCcCCCc
Q 000152 725 MVERITTSASSDSSGLHR 742 (2027)
Q Consensus 725 mVERI~TSSSsDSss~NR 742 (2027)
+|+.-..|......+-++
T Consensus 158 ~v~~~lpS~~~~~ld~h~ 175 (459)
T KOG0288|consen 158 FVEDTLPSRALFVLDAHE 175 (459)
T ss_pred hhhcccchhhhhhhhccc
Confidence 444434444444443333
No 106
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=47.88 E-value=6e+02 Score=32.89 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=8.0
Q ss_pred ccccccCCCCchhhhc
Q 000152 189 LQAALPAASGSEKKQK 204 (2027)
Q Consensus 189 l~a~~p~~~~~~~k~~ 204 (2027)
|||..|+--+++.|-|
T Consensus 82 lqagtpplqVnEEk~~ 97 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEK 97 (672)
T ss_pred HhcCCCCCCCchhhcc
Confidence 4555555555554443
No 107
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=47.53 E-value=1.3e+02 Score=38.81 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000152 36 HSGYYGSNRARPTGGGGGGM 55 (2027)
Q Consensus 36 ~~g~~~~~~~~~~~~~~ggm 55 (2027)
++|+.+...+++|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33443344444445555555
No 108
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.43 E-value=7.6e+02 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=7.1
Q ss_pred cccc-CCCCCCceeec
Q 000152 1315 LAHM-HPSQPPVFQFG 1329 (2027)
Q Consensus 1315 l~~m-h~s~~plfqfg 1329 (2027)
|-|+ |++.+=|++|+
T Consensus 1205 ~v~~~~~~~~~l~~~~ 1220 (1317)
T KOG0612|consen 1205 LVHKGHEFIPFLYHFP 1220 (1317)
T ss_pred hcCCCCcchHHHhhcc
Confidence 3344 45555454443
No 109
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.20 E-value=9e+02 Score=33.80 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=13.1
Q ss_pred cCCCCccceEEEeecccCCCCCCCCCCc
Q 000152 1269 GLSQAETPVKLQFGLFSGPSLIPSPFPA 1296 (2027)
Q Consensus 1269 ~~~~~e~pv~lqfglfsgpslipspvpa 1296 (2027)
.+.|++-|.++ -||.-|-|--|-
T Consensus 971 sisqprNpsri-----agp~svtslE~m 993 (1265)
T KOG0976|consen 971 SISQPRNPSRI-----AGPKSVTSLEPM 993 (1265)
T ss_pred EeecCCCchhh-----cCcccccccccc
Confidence 35566666653 466666655553
No 110
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.70 E-value=4e+02 Score=38.38 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=15.2
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCC
Q 000152 423 MSSPFRDTVQDDSGRRDIDYGPGGRQPW 450 (2027)
Q Consensus 423 ~~sp~r~~~~dd~grRD~GyGrng~qPw 450 (2027)
|++-++++.+-.-+.|+.-.||||-..+
T Consensus 308 VSeeakdLI~~ll~~~e~RLgrngiedi 335 (1317)
T KOG0612|consen 308 VSEEAKDLIEALLCDREVRLGRNGIEDI 335 (1317)
T ss_pred cCHHHHHHHHHHhcChhhhcccccHHHH
Confidence 3333444444445566666777776543
No 111
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.25 E-value=6.2e+02 Score=36.16 Aligned_cols=15 Identities=53% Similarity=0.860 Sum_probs=6.7
Q ss_pred CCCC-eeecCCCCCCcc
Q 000152 280 GPLP-LVRLKPRSDWAD 295 (2027)
Q Consensus 280 gplp-lvrl~~~sdwad 295 (2027)
|||- +|-|.-- -||.
T Consensus 497 GPlG~~Vtl~~~-KWa~ 512 (1074)
T KOG0250|consen 497 GPLGKYVTLKEP-KWAL 512 (1074)
T ss_pred CCccceeEecCc-HHHH
Confidence 5543 3444322 5664
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.19 E-value=4e+02 Score=32.95 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.5
Q ss_pred CCcchhh
Q 000152 717 GDWEDGE 723 (2027)
Q Consensus 717 DDwED~E 723 (2027)
.+|.+..
T Consensus 166 V~W~EIN 172 (314)
T PF04111_consen 166 VEWNEIN 172 (314)
T ss_dssp --HHHHH
T ss_pred CChHHHH
Confidence 3566443
No 113
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=45.05 E-value=39 Score=42.46 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.8
Q ss_pred CCCCCCc
Q 000152 259 NHDTGSA 265 (2027)
Q Consensus 259 ~~~~g~~ 265 (2027)
-||.|+.
T Consensus 55 DFGDGGA 61 (506)
T KOG2441|consen 55 DFGDGGA 61 (506)
T ss_pred hccCCCc
Confidence 3444433
No 114
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.53 E-value=8e+02 Score=35.53 Aligned_cols=6 Identities=50% Similarity=0.905 Sum_probs=2.2
Q ss_pred hhcccc
Q 000152 1228 LMDHLN 1233 (2027)
Q Consensus 1228 ~~~~~~ 1233 (2027)
++||+|
T Consensus 1168 lVDslD 1173 (1293)
T KOG0996|consen 1168 LVDSLD 1173 (1293)
T ss_pred eeccCC
Confidence 333333
No 115
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=44.15 E-value=38 Score=42.02 Aligned_cols=29 Identities=38% Similarity=0.804 Sum_probs=22.6
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC
Q 000152 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP 99 (2027)
Q Consensus 71 klsvp~plnlpslrkeh~~~d~~~~~~~~ 99 (2027)
.-.||||-..||.++...-||.-|.-||.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrggg 338 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGG 338 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCC
Confidence 34589999999999998888887654433
No 116
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=42.65 E-value=9e+02 Score=34.76 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=6.4
Q ss_pred cCcccccccccccCCcc
Q 000152 859 MESDFHENITERYGDVG 875 (2027)
Q Consensus 859 ~dSd~~~n~~erfGdsg 875 (2027)
||+.|..=|.-.||++.
T Consensus 601 ~d~~~~~~~~~~l~~t~ 617 (1163)
T COG1196 601 FDPKYEPAVRFVLGDTL 617 (1163)
T ss_pred CCHHHHHHHHHHhCCeE
Confidence 44433333333444433
No 117
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.34 E-value=9.1e+02 Score=31.51 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred ccccccccCCccccCCCCCCCCCCCCCCCC----CCCCCCCccccccccccccCCCCCCCCCcccccc
Q 000152 864 HENITERYGDVGWGQGRYRGNVHPPYPDRI----YPNPETDVISSFGRSRYSMRHPRVLPPPTLTSMQ 927 (2027)
Q Consensus 864 ~~n~~erfGdsgW~~ssS~~rp~PP~peR~----Yqnsd~d~~~s~~r~rys~rqprvlppp~~~~~~ 927 (2027)
+.|+..-||..=.+...+++..+|.+.--| |.++-..-+-+-.-+--+.-.|-|. |++..+|
T Consensus 471 ~~~~~g~~g~~llA~r~sH~s~~~t~~~~m~~s~~nsnst~~ins~~~~s~~t~~p~~~--Psla~v~ 536 (552)
T KOG2129|consen 471 HDNSIGEPGHRLLAERRSHGSSPPTVVVQMSTSRANSNSTANINSDTHPSSCTSHPQVA--PSLATVH 536 (552)
T ss_pred cccccCCCchhHHHHHHhcCCCCcchhhhhhhhhccCCcccccccccCccccccCcccC--chhheec
Confidence 344445566656667777877777766555 3333333332333332333455553 4555554
No 118
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=41.15 E-value=1.3e+02 Score=38.72 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=3.3
Q ss_pred cccccccC
Q 000152 177 KASVLRGE 184 (2027)
Q Consensus 177 ~~~vlrge 184 (2027)
|-|-|||-
T Consensus 178 KmVd~rG~ 185 (641)
T KOG3915|consen 178 KMVDLRGA 185 (641)
T ss_pred eeeeecCc
Confidence 33444443
No 119
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.87 E-value=1.2e+03 Score=31.06 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=7.6
Q ss_pred hhhhhhhhcccccCchhh
Q 000152 551 VKKKKDVLKQTDFHDPVR 568 (2027)
Q Consensus 551 IKKKKEelkq~e~EeKrR 568 (2027)
|..|-.+++.+..++..+
T Consensus 89 l~~Kl~eLE~e~k~d~v~ 106 (508)
T PF00901_consen 89 LQRKLKELEDEQKEDEVR 106 (508)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 445544444333333333
No 120
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=35.02 E-value=27 Score=43.21 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000152 36 HSGYYGSNRARPTGGGGGGM 55 (2027)
Q Consensus 36 ~~g~~~~~~~~~~~~~~ggm 55 (2027)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444444555553
No 121
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.96 E-value=1.7e+02 Score=38.31 Aligned_cols=8 Identities=25% Similarity=-0.147 Sum_probs=3.3
Q ss_pred hccccccc
Q 000152 213 QGMSQELG 220 (2027)
Q Consensus 213 ~~~~~~~~ 220 (2027)
-.|+++-+
T Consensus 103 ~ils~edF 110 (591)
T KOG2505|consen 103 PILSEEDF 110 (591)
T ss_pred CcccHHHH
Confidence 34444433
No 122
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=33.76 E-value=6.9e+02 Score=27.65 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000152 586 RQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRK 665 (2027)
Q Consensus 586 RRReEEEqeReEEEeRKEEEERERkeREEEERrRReEEErRErEErEEeEReEaERREEEERrReEEErRRreEEEEKRK 665 (2027)
..-.++.+.+-.......+..+...+..+.+-+++..+.+.+.....+..+.++++..++.....+++..+..++.+..-
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhccccccc
Q 000152 666 HAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKE 707 (2027)
Q Consensus 666 EEEEeKrkEeEEreKKEEaEaEKrekeAeekaeEKareivkE 707 (2027)
+.++++...+-..+...-+-....+-..+....+.-..++++
T Consensus 114 ~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~li~~ 155 (164)
T PRK14473 114 EQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAE 155 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHH
No 123
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.75 E-value=1.4e+03 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCccccccc---cccccCCCCCC
Q 000152 887 PPYPDRIYPNPETDVISSFGR---SRYSMRHPRVL 918 (2027)
Q Consensus 887 PP~peR~Yqnsd~d~~~s~~r---~rys~rqprvl 918 (2027)
||+--..--+.|++.+| |+. -+||+|++|..
T Consensus 617 ~p~n~~~aytldg~~~~-~~g~~~~~ySt~~~~~r 650 (1074)
T KOG0250|consen 617 PPANVTKAYTLDGRQIF-AGGPNYRVYSTRGTRAR 650 (1074)
T ss_pred CCccceeeeccCccccc-cCCCCcceeccCCCCCC
Confidence 44444442244555553 333 48999998765
No 124
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=32.63 E-value=15 Score=47.37 Aligned_cols=8 Identities=25% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCcccccc
Q 000152 379 GNMWRASS 386 (2027)
Q Consensus 379 ~n~Wr~ss 386 (2027)
+..||.++
T Consensus 236 ~~s~rqlS 243 (495)
T PF12004_consen 236 DFSRRQLS 243 (495)
T ss_dssp --------
T ss_pred chhhhhcc
Confidence 34444444
No 125
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.08 E-value=1.9e+02 Score=37.86 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.4
Q ss_pred cCCCCCCccccccc
Q 000152 374 REGREGNMWRASSS 387 (2027)
Q Consensus 374 r~g~e~n~Wr~ssp 387 (2027)
|.|++||+-.+.-|
T Consensus 350 R~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP 363 (567)
T ss_pred hccCccceEEEecc
Confidence 44555555555544
No 126
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=31.44 E-value=3.3e+02 Score=30.64 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=7.1
Q ss_pred cccc-CCCCCCCCCCCc
Q 000152 528 FMKD-FGSSSFDGRDPF 543 (2027)
Q Consensus 528 fmkD-fGsS~fDG~Dpf 543 (2027)
|+.+ .|+++-.|-..|
T Consensus 22 ~V~NV~GSSAGAGSGeF 38 (142)
T PF06658_consen 22 FVRNVQGSSAGAGSGEF 38 (142)
T ss_pred eeccccccccccCccHH
Confidence 4444 344444444333
No 127
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.43 E-value=2.2e+02 Score=37.33 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=4.0
Q ss_pred ccCCCCCC
Q 000152 309 RDHGFSKS 316 (2027)
Q Consensus 309 rd~g~sk~ 316 (2027)
=|-||-+.
T Consensus 170 ldmgFe~~ 177 (567)
T KOG0345|consen 170 LDMGFEAS 177 (567)
T ss_pred hcccHHHH
Confidence 35565443
No 128
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.02 E-value=1.6e+03 Score=31.30 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=10.0
Q ss_pred cCCCCCCCCCccc
Q 000152 912 MRHPRVLPPPTLT 924 (2027)
Q Consensus 912 ~rqprvlppp~~~ 924 (2027)
||++-|.++|.-+
T Consensus 440 ~~~~~~~~~p~~~ 452 (916)
T KOG0249|consen 440 MDRMGVMTLPSDL 452 (916)
T ss_pred ccCCccccCcccc
Confidence 7889999988443
No 129
>PLN03188 kinesin-12 family protein; Provisional
Probab=29.72 E-value=1.8e+03 Score=32.62 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=12.8
Q ss_pred ccCCccccccccccccccCccc
Q 000152 407 ERPSSLNREANKETKFMSSPFR 428 (2027)
Q Consensus 407 vRp~S~~R~~tKe~kY~~sp~r 428 (2027)
+.|+++.=.+...+....+|..
T Consensus 671 ~~~~~lsi~p~~~~~~l~~p~~ 692 (1320)
T PLN03188 671 ASPSSLSIVPVEVSPVLKSPTL 692 (1320)
T ss_pred CCccccccccccccccccCCcc
Confidence 5566666666666655555533
No 130
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.55 E-value=1.2e+03 Score=29.76 Aligned_cols=7 Identities=29% Similarity=0.800 Sum_probs=3.3
Q ss_pred Ccccccc
Q 000152 768 NSWRRDA 774 (2027)
Q Consensus 768 nswrR~~ 774 (2027)
-+|-|+.
T Consensus 301 s~WtRpd 307 (469)
T KOG3878|consen 301 SIWTRPD 307 (469)
T ss_pred hhcCccc
Confidence 3455553
No 131
>PLN03188 kinesin-12 family protein; Provisional
Probab=27.25 E-value=1.8e+03 Score=32.75 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=5.8
Q ss_pred CccccCCCCCCC
Q 000152 70 PKLSVPPPLNLP 81 (2027)
Q Consensus 70 ~klsvp~plnlp 81 (2027)
+||-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 444444455544
No 132
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=8.2e+02 Score=30.39 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=5.8
Q ss_pred hhcccccCCCCC
Q 000152 271 VRKQEEYFPGPL 282 (2027)
Q Consensus 271 ~rk~~~~~~gpl 282 (2027)
+|-..+||-|-+
T Consensus 16 ~~~~~~~f~~~~ 27 (379)
T COG5269 16 ARIHSEYFKGRN 27 (379)
T ss_pred cChHHHHhcchh
Confidence 344445555543
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.68 E-value=1.1e+03 Score=31.04 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000152 595 RALELARREEEERLRVAR-EQEEQRRRLEEETREAVW-RAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKL 672 (2027)
Q Consensus 595 ReEEEeRKEEEERERkeR-EEEERrRReEEErRErEE-rEEeEReEaERREEEERrReEEErRRreEEEEKRKEEEEeKr 672 (2027)
+.+-..+--++.-.+..+ +.+..+...++...+... +.+..-.+++++.-|.++++...+.++-..|.+..+|+.+..
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhccccccc
Q 000152 673 LELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKE 707 (2027)
Q Consensus 673 kEeEEreKKEEaEaEKrekeAeekaeEKareivkE 707 (2027)
.+...--...-.+.+++++++....+++...+.++
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.15 E-value=1.9e+03 Score=30.36 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=6.4
Q ss_pred CCCCcchhHhhhcc
Q 000152 261 DTGSARRSEQVRKQ 274 (2027)
Q Consensus 261 ~~g~~~~~e~~rk~ 274 (2027)
.+|-.|.-=-.||+
T Consensus 210 SLGITCIELAERkP 223 (948)
T KOG0577|consen 210 SLGITCIELAERKP 223 (948)
T ss_pred eccchhhhhhhcCC
Confidence 34444544344554
No 135
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.04 E-value=2e+03 Score=30.55 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=5.7
Q ss_pred CcCCccccccc
Q 000152 349 SETGKVSSSEV 359 (2027)
Q Consensus 349 ~e~~k~~~se~ 359 (2027)
|=+||.+.=+-
T Consensus 34 nGsGKSSIldA 44 (908)
T COG0419 34 NGAGKSSILDA 44 (908)
T ss_pred CCCcHHHHHHH
Confidence 44566654433
No 136
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=24.22 E-value=44 Score=45.89 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.4
Q ss_pred cccccccc
Q 000152 903 SSFGRSRY 910 (2027)
Q Consensus 903 ~s~~r~ry 910 (2027)
..+-|-|.
T Consensus 791 ~~lererl 798 (982)
T PF03154_consen 791 NPLERERL 798 (982)
T ss_pred ChHHHHHH
Confidence 34444444
No 137
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.35 E-value=1.8e+03 Score=30.85 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=11.9
Q ss_pred hhcccCCCCCCcccCCCCcee
Q 000152 1486 EKSLTGSKAQGLTSGSRGKRY 1506 (2027)
Q Consensus 1486 ~k~~~~~k~~g~~sg~rg~~y 1506 (2027)
.+-|-..++-++|+-|+-||+
T Consensus 816 aRq~Le~eF~nLi~~gtdrr~ 836 (916)
T KOG0249|consen 816 ARQLLEREFNNLLALGTDRRL 836 (916)
T ss_pred HHHHHHHHHHhhhcccccccC
Confidence 344455566666666655554
No 138
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=22.50 E-value=8.7e+02 Score=33.21 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=29.0
Q ss_pred cccccCCCCCcccccchhhhhcc--cccccCCCCcccceeeeccCceecc
Q 000152 1098 YQEEDVPEGDDENIELTQEFEGI--HLEEKGSPHMMSNLVLGFNEGVEVP 1145 (2027)
Q Consensus 1098 y~eed~~~~~den~~l~~e~~~~--hl~~k~~p~~~~~~vlgf~egv~v~ 1145 (2027)
..+.+-|.++=.+=|...||+.- -..++.-|..++..+-|.-.=+=.+
T Consensus 583 ~~q~~li~~AFA~DdV~~eF~~eK~~~~e~e~pk~~~~~LPGWG~W~G~g 632 (735)
T PF04615_consen 583 FEQRELIREAFAGDDVVAEFEKEKEEEIEEEKPKEIDLTLPGWGSWAGPG 632 (735)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhhCCcccccCCCCcccccCCC
Confidence 45666677773333566788753 2345667878888777775533333
No 139
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=21.90 E-value=2.1e+02 Score=41.44 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000152 574 ELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRI-AREE 652 (2027)
Q Consensus 574 ELERreKeqEEERRReEEEqeReEEEeRKEEEERERkeREEEERrRReEEErRErEErEEeEReEaERREEEERr-ReEE 652 (2027)
+.+..++...+.........+++.....++++.++++.++..+++.++.-.....+.++.+.-.+-.+..+++.+ ..-+
T Consensus 2089 ~qQ~~qQq~~~~~~~~~ql~~qq~q~~~~~r~q~~~~~r~~Q~rqQq~~~q~qQqqq~q~qq~~q~~q~~q~Qq~~~~~q 2168 (2220)
T KOG3598|consen 2089 RQQIMQQQMREKLAAHHQLVEQQKQRDAREREQREREAREHQERQQQEAYQKQQQQQEQKQQIEQNNQIMQEQQREEAYQ 2168 (2220)
T ss_pred HHHHHHHhHHHHhhHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000152 653 ERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSN 692 (2027)
Q Consensus 653 ErRRreEEEEKRKEEEEeKrkEeEEreKKEEaEaEKreke 692 (2027)
.++.+..-=.++-++.-+.+++-++.-++++...+..+.+
T Consensus 2169 a~qq~qplf~RQglqqtqqQqqtaalVRQlQ~qLs~~qpq 2208 (2220)
T KOG3598|consen 2169 AEQQRQPLFRRQGLQQTQQQQQTAALVRQLQMQLSAEQPQ 2208 (2220)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
No 140
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.62 E-value=2.3e+02 Score=36.26 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=3.2
Q ss_pred hhhhhhhh
Q 000152 549 GVVKKKKD 556 (2027)
Q Consensus 549 saIKKKKE 556 (2027)
+.+|+..+
T Consensus 348 Al~k~~ee 355 (434)
T COG4499 348 ALTKLYEE 355 (434)
T ss_pred HHHHHHHH
Confidence 33444433
No 141
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.10 E-value=2.2e+03 Score=28.85 Aligned_cols=10 Identities=50% Similarity=0.704 Sum_probs=4.8
Q ss_pred hhhhhhhccc
Q 000152 721 DGERMVERIT 730 (2027)
Q Consensus 721 D~ERmVERI~ 730 (2027)
+.++++++|+
T Consensus 306 E~~~E~~Hi~ 315 (508)
T PF00901_consen 306 ENEREVEHIK 315 (508)
T ss_pred HHHHHHHHHH
Confidence 4444555543
Done!