Query 000152
Match_columns 2027
No_of_seqs 362 out of 1503
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 93.9 0.0071 2.4E-07 62.7 -1.2 25 839-863 34-58 (141)
2 3vkg_A Dynein heavy chain, cyt 91.3 1.3 4.6E-05 64.5 15.1 7 1206-1212 2686-2692(3245)
3 2dfs_A Myosin-5A; myosin-V, in 86.0 5.8 0.0002 53.1 14.7 20 154-173 241-260 (1080)
4 2zuo_A MVP, major vault protei 84.9 38 0.0013 44.3 20.5 11 150-160 146-156 (861)
5 2zuo_A MVP, major vault protei 83.7 47 0.0016 43.6 20.5 12 150-161 199-210 (861)
6 3oja_A Leucine-rich immune mol 82.6 21 0.00071 42.8 16.3 6 571-576 326-331 (487)
7 1i84_S Smooth muscle myosin he 81.8 2 6.8E-05 57.6 7.9 20 154-173 268-287 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 80.1 35 0.0012 45.9 18.5 20 174-193 356-375 (1080)
9 1i84_S Smooth muscle myosin he 78.8 5 0.00017 53.8 10.2 21 173-193 381-401 (1184)
10 1f5n_A Interferon-induced guan 68.4 68 0.0023 40.6 15.9 7 56-62 42-48 (592)
11 2b5u_A Colicin E3; high resolu 63.8 2.3E+02 0.008 35.5 18.4 6 539-544 279-284 (551)
12 2pk2_A Cyclin-T1, protein TAT; 58.2 2.1 7.1E-05 50.5 0.0 14 42-55 291-304 (358)
13 4f61_I Stathmin-like domain R4 54.2 3E+02 0.01 31.7 18.2 11 548-558 44-54 (240)
14 3iyk_A VP5; icosahedral virus; 37.2 7.4E+02 0.025 31.3 17.8 18 551-568 95-112 (526)
15 2pk2_A Cyclin-T1, protein TAT; 31.0 10 0.00035 44.8 0.0 15 41-55 293-307 (358)
16 2b5u_A Colicin E3; high resolu 29.2 9.8E+02 0.033 30.3 19.8 6 114-119 35-40 (551)
17 3iyk_A VP5; icosahedral virus; 21.9 1.3E+03 0.044 29.2 17.0 10 721-730 312-321 (526)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=93.87 E-value=0.0071 Score=62.66 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccCCccccCCCCCccccccccCccc
Q 000152 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (2027)
Q Consensus 839 ~~p~~W~apgDGd~igRq~E~dSd~ 863 (2027)
.+.+|||+||||+||.||||+|++=
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K 58 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDK 58 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSS
T ss_pred cccceEEEeeCChhhheeeeeCCCC
Confidence 5789999999999999999999953
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.29 E-value=1.3 Score=64.49 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.3
Q ss_pred hHHHHHH
Q 000152 1206 TDKAIQD 1212 (2027)
Q Consensus 1206 ~eka~q~ 1212 (2027)
||++|+.
T Consensus 2686 A~~~i~~ 2692 (3245)
T 3vkg_A 2686 AEKSIYA 2692 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.97 E-value=5.8 Score=53.08 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=10.6
Q ss_pred cccCCCCCcCCCCCCccCCC
Q 000152 154 VYVPPSVRSGTVGPALSSFA 173 (2027)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2027)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 34444455555555566555
No 4
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=84.95 E-value=38 Score=44.35 Aligned_cols=11 Identities=36% Similarity=0.927 Sum_probs=7.0
Q ss_pred CCcccccCCCC
Q 000152 150 DGVGVYVPPSV 160 (2027)
Q Consensus 150 ~~~~~~~~~s~ 160 (2027)
.++|.|.|..-
T Consensus 146 ~gPGtY~P~ve 156 (861)
T 2zuo_A 146 EGPGTYIPQKE 156 (861)
T ss_dssp CSSCCCCSSSC
T ss_pred ECCceecCCCc
Confidence 56777777643
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=83.71 E-value=47 Score=43.61 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=6.7
Q ss_pred CCcccccCCCCC
Q 000152 150 DGVGVYVPPSVR 161 (2027)
Q Consensus 150 ~~~~~~~~~s~~ 161 (2027)
++.|.|+|..--
T Consensus 199 t~~gayiP~v~E 210 (861)
T 2zuo_A 199 RSVGAYLPAVFE 210 (861)
T ss_dssp CSSSCCCCTTCC
T ss_pred eccceecCCCce
Confidence 345666665544
No 6
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.60 E-value=21 Score=42.83 Aligned_cols=6 Identities=33% Similarity=0.058 Sum_probs=2.3
Q ss_pred HHHHHH
Q 000152 571 FEAELE 576 (2027)
Q Consensus 571 ~EaELE 576 (2027)
+++|.+
T Consensus 326 F~~Eve 331 (487)
T 3oja_A 326 ERLECE 331 (487)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.76 E-value=2 Score=57.61 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.3
Q ss_pred cccCCCCCcCCCCCCccCCC
Q 000152 154 VYVPPSVRSGTVGPALSSFA 173 (2027)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2027)
.|+---.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 35555555555555666665
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.08 E-value=35 Score=45.85 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.1
Q ss_pred ccccccccccCCCccccccc
Q 000152 174 PAEKASVLRGEDFPSLQAAL 193 (2027)
Q Consensus 174 ~~e~~~vlrgedfpsl~a~~ 193 (2027)
.+++|+-|=|=|.-.|..+|
T Consensus 356 ~l~~~a~LLgv~~~~L~~~l 375 (1080)
T 2dfs_A 356 PLTIFCDLMGVDYEEMAHWL 375 (1080)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 45666666666655565555
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.76 E-value=5 Score=53.84 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.2
Q ss_pred CccccccccccCCCccccccc
Q 000152 173 APAEKASVLRGEDFPSLQAAL 193 (2027)
Q Consensus 173 ~~~e~~~vlrgedfpsl~a~~ 193 (2027)
..+++|+-|=|=|.-.|..+|
T Consensus 381 ~~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 381 TAAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 356777777777766666666
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.44 E-value=68 Score=40.60 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000152 56 LVLSRPR 62 (2027)
Q Consensus 56 ~vlsr~r 62 (2027)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 11
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=63.80 E-value=2.3e+02 Score=35.50 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=3.2
Q ss_pred CCCCcc
Q 000152 539 GRDPFS 544 (2027)
Q Consensus 539 G~Dpf~ 544 (2027)
+.+|.+
T Consensus 279 g~ePlY 284 (551)
T 2b5u_A 279 GHNAVY 284 (551)
T ss_dssp CCCCEE
T ss_pred CCCceE
Confidence 555554
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=58.18 E-value=2.1 Score=50.53 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000152 42 SNRARPTGGGGGGM 55 (2027)
Q Consensus 42 ~~~~~~~~~~~ggm 55 (2027)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444554
No 13
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=54.19 E-value=3e+02 Score=31.67 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=6.3
Q ss_pred hhhhhhhhhhh
Q 000152 548 VGVVKKKKDVL 558 (2027)
Q Consensus 548 lsaIKKKKEel 558 (2027)
+..|++|.+..
T Consensus 44 leEIqkKLeAA 54 (240)
T 4f61_I 44 LEEIQKKLEAA 54 (240)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666665543
No 14
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.17 E-value=7.4e+02 Score=31.27 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=7.6
Q ss_pred hhhhhhhhcccccCchhh
Q 000152 551 VKKKKDVLKQTDFHDPVR 568 (2027)
Q Consensus 551 IKKKKEelkq~e~EeKrR 568 (2027)
+..|-.+++.+..++..+
T Consensus 95 ~~~Kl~eLE~e~k~d~~~ 112 (526)
T 3iyk_A 95 IQAKLKELEDEQRNELVR 112 (526)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 444444444333333333
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=31.01 E-value=10 Score=44.76 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCce
Q 000152 41 GSNRARPTGGGGGGM 55 (2027)
Q Consensus 41 ~~~~~~~~~~~~ggm 55 (2027)
|+.+||+|+||+||-
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (358)
T 2pk2_A 293 GGGSGGGTSGGVPGQ 307 (358)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCc
Confidence 333344444444443
No 16
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.21 E-value=9.8e+02 Score=30.28 Aligned_cols=6 Identities=50% Similarity=1.714 Sum_probs=0.0
Q ss_pred CCCCCC
Q 000152 114 SGTGWT 119 (2027)
Q Consensus 114 sg~gw~ 119 (2027)
+|.||+
T Consensus 35 ~gsGws 40 (551)
T 2b5u_A 35 DGSGWS 40 (551)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 344443
No 17
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.93 E-value=1.3e+03 Score=29.20 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=4.5
Q ss_pred hhhhhhhccc
Q 000152 721 DGERMVERIT 730 (2027)
Q Consensus 721 D~ERmVERI~ 730 (2027)
+.++++++|+
T Consensus 312 E~~~Ev~Hi~ 321 (526)
T 3iyk_A 312 ENHKELMHIK 321 (526)
T ss_pred HHHHHHHHHH
Confidence 4444444443
Done!