Query 000153
Match_columns 2021
No_of_seqs 362 out of 1477
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 93.8 0.0077 2.6E-07 62.4 -1.1 25 839-863 34-58 (141)
2 3vkg_A Dynein heavy chain, cyt 92.1 1.7 5.7E-05 63.5 17.5 7 1206-1212 2686-2692(3245)
3 3vkg_A Dynein heavy chain, cyt 92.1 0.99 3.4E-05 65.8 15.1 7 551-557 1908-1914(3245)
4 2dfs_A Myosin-5A; myosin-V, in 86.6 5.4 0.00018 53.4 14.9 20 154-173 241-260 (1080)
5 2zuo_A MVP, major vault protei 85.7 31 0.0011 45.2 20.2 11 150-160 146-156 (861)
6 2zuo_A MVP, major vault protei 83.4 51 0.0017 43.3 20.7 12 150-161 199-210 (861)
7 1i84_S Smooth muscle myosin he 82.4 1.9 6.3E-05 57.9 7.9 20 154-173 268-287 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 80.1 36 0.0012 45.8 18.5 20 174-193 356-375 (1080)
9 1i84_S Smooth muscle myosin he 79.8 4.5 0.00015 54.3 10.2 21 173-193 381-401 (1184)
10 4f61_I Stathmin-like domain R4 75.5 88 0.003 35.9 17.2 10 548-557 44-53 (240)
11 1f5n_A Interferon-induced guan 70.0 70 0.0024 40.5 16.5 7 56-62 42-48 (592)
12 2b5u_A Colicin E3; high resolu 59.6 3.1E+02 0.011 34.5 18.5 6 539-544 279-284 (551)
13 2pk2_A Cyclin-T1, protein TAT; 58.7 2 6.9E-05 50.6 0.0 14 42-55 291-304 (358)
14 2pk2_A Cyclin-T1, protein TAT; 31.5 10 0.00034 44.9 0.0 15 41-55 293-307 (358)
15 3iyk_A VP5; icosahedral virus; 29.0 9.8E+02 0.033 30.2 17.8 10 551-560 95-104 (526)
16 2b5u_A Colicin E3; high resolu 25.9 1.1E+03 0.038 29.8 19.5 6 114-119 35-40 (551)
17 3mq9_A Bone marrow stromal ant 22.5 1E+03 0.035 28.3 16.7 6 675-680 455-460 (471)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=93.83 E-value=0.0077 Score=62.42 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccCCcccccCCCCccccccccCccc
Q 000153 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (2021)
Q Consensus 839 ~~p~~W~apgDGd~igRq~E~dSd~ 863 (2021)
.+.+|||+||||+||.||||+|++=
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K 58 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDK 58 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSS
T ss_pred cccceEEEeeCChhhheeeeeCCCC
Confidence 5789999999999999999999953
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.10 E-value=1.7 Score=63.54 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.4
Q ss_pred hHHHHHH
Q 000153 1206 TDKAIQD 1212 (2021)
Q Consensus 1206 ~eka~q~ 1212 (2021)
||++|+.
T Consensus 2686 A~~~i~~ 2692 (3245)
T 3vkg_A 2686 AEKSIYA 2692 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555444
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.05 E-value=0.99 Score=65.76 Aligned_cols=7 Identities=29% Similarity=0.677 Sum_probs=2.8
Q ss_pred hhhhhhh
Q 000153 551 VKKKKDV 557 (2021)
Q Consensus 551 IKKKKEe 557 (2021)
+.+|+++
T Consensus 1908 l~~K~~e 1914 (3245)
T 3vkg_A 1908 INEKRDQ 1914 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.58 E-value=5.4 Score=53.38 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=10.6
Q ss_pred cccCCCCCcCCCCCCccCCC
Q 000153 154 VYVPPSVRSGTVGPALSSFA 173 (2021)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2021)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 34444455555555566555
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=85.74 E-value=31 Score=45.17 Aligned_cols=11 Identities=36% Similarity=0.927 Sum_probs=7.1
Q ss_pred CCcccccCCCC
Q 000153 150 DGVGVYVPPSV 160 (2021)
Q Consensus 150 ~~~~~~~~~s~ 160 (2021)
.++|.|.|..-
T Consensus 146 ~gPGtY~P~ve 156 (861)
T 2zuo_A 146 EGPGTYIPQKE 156 (861)
T ss_dssp CSSCCCCSSSC
T ss_pred ECCceecCCCc
Confidence 56777777643
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=83.42 E-value=51 Score=43.26 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=6.6
Q ss_pred CCcccccCCCCC
Q 000153 150 DGVGVYVPPSVR 161 (2021)
Q Consensus 150 ~~~~~~~~~s~~ 161 (2021)
++.|.|+|..--
T Consensus 199 t~~gayiP~v~E 210 (861)
T 2zuo_A 199 RSVGAYLPAVFE 210 (861)
T ss_dssp CSSSCCCCTTCC
T ss_pred eccceecCCCce
Confidence 345666665544
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.36 E-value=1.9 Score=57.87 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.3
Q ss_pred cccCCCCCcCCCCCCccCCC
Q 000153 154 VYVPPSVRSGTVGPALSSFA 173 (2021)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (2021)
.|+---.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 35555555555555666665
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.07 E-value=36 Score=45.80 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.1
Q ss_pred cccccccccCCCCccccccc
Q 000153 174 PAEKASVLRGEDFPSLQAAL 193 (2021)
Q Consensus 174 ~~e~~~vlrgedfpsl~a~~ 193 (2021)
.+++|+-|=|=|.-.|..+|
T Consensus 356 ~l~~~a~LLgv~~~~L~~~l 375 (1080)
T 2dfs_A 356 PLTIFCDLMGVDYEEMAHWL 375 (1080)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 45666666666655565555
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.83 E-value=4.5 Score=54.34 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.2
Q ss_pred CcccccccccCCCCccccccc
Q 000153 173 APAEKASVLRGEDFPSLQAAL 193 (2021)
Q Consensus 173 ~~~e~~~vlrgedfpsl~a~~ 193 (2021)
..+++|+-|=|=|.-.|..+|
T Consensus 381 ~~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 381 TAAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 356777777777666666666
No 10
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=75.55 E-value=88 Score=35.88 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.3
Q ss_pred hhhhhhhhhh
Q 000153 548 VGVVKKKKDV 557 (2021)
Q Consensus 548 isaIKKKKEe 557 (2021)
+..|++|.+.
T Consensus 44 leEIqkKLeA 53 (240)
T 4f61_I 44 LEEIQKKLEA 53 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555665553
No 11
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=70.01 E-value=70 Score=40.47 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000153 56 LVLSRPR 62 (2021)
Q Consensus 56 ~vlsr~r 62 (2021)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=59.64 E-value=3.1e+02 Score=34.46 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=3.1
Q ss_pred CCCCcc
Q 000153 539 GRDPFS 544 (2021)
Q Consensus 539 G~Dpf~ 544 (2021)
+.+|.+
T Consensus 279 g~ePlY 284 (551)
T 2b5u_A 279 GHNAVY 284 (551)
T ss_dssp CCCCEE
T ss_pred CCCceE
Confidence 555554
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=58.69 E-value=2 Score=50.64 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000153 42 SNRARPTGGGGGGM 55 (2021)
Q Consensus 42 ~~~~~~~~~~~ggm 55 (2021)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444554
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=31.55 E-value=10 Score=44.88 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCce
Q 000153 41 GSNRARPTGGGGGGM 55 (2021)
Q Consensus 41 ~~~~~~~~~~~~ggm 55 (2021)
|+.+||+|+||+||-
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (358)
T 2pk2_A 293 GGGSGGGTSGGVPGQ 307 (358)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCc
Confidence 333344444444443
No 15
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=29.00 E-value=9.8e+02 Score=30.22 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.2
Q ss_pred hhhhhhhccc
Q 000153 551 VKKKKDVLKQ 560 (2021)
Q Consensus 551 IKKKKEelkq 560 (2021)
+..|-.+++.
T Consensus 95 ~~~Kl~eLE~ 104 (526)
T 3iyk_A 95 IQAKLKELED 104 (526)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 16
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=25.90 E-value=1.1e+03 Score=29.82 Aligned_cols=6 Identities=50% Similarity=1.714 Sum_probs=0.0
Q ss_pred CCCCCC
Q 000153 114 SGTGWT 119 (2021)
Q Consensus 114 sg~gw~ 119 (2021)
+|.||+
T Consensus 35 ~gsGws 40 (551)
T 2b5u_A 35 DGSGWS 40 (551)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 344444
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.51 E-value=1e+03 Score=28.26 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000153 675 LEERIA 680 (2021)
Q Consensus 675 eEEreK 680 (2021)
++.+++
T Consensus 455 ~~~~~~ 460 (471)
T 3mq9_A 455 LNHKLQ 460 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!