Query 000156
Match_columns 2015
No_of_seqs 429 out of 1551
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 3.1E-51 6.6E-56 528.5 36.1 742 609-1390 13-793 (815)
2 KOG1820 Microtubule-associated 100.0 2.3E-41 5E-46 437.1 43.5 753 20-817 14-792 (815)
3 KOG1824 TATA-binding protein-i 100.0 4.7E-23 1E-27 255.9 69.6 843 15-1051 9-970 (1233)
4 KOG2171 Karyopherin (importin) 99.9 2.5E-17 5.4E-22 213.5 72.5 838 289-1380 8-934 (1075)
5 KOG2171 Karyopherin (importin) 99.9 3.1E-16 6.8E-21 203.4 69.9 877 49-1067 115-1073(1075)
6 PF12348 CLASP_N: CLASP N term 99.9 1.4E-20 3.1E-25 220.1 20.0 210 284-496 7-227 (228)
7 KOG1824 TATA-binding protein-i 99.7 1.2E-10 2.7E-15 146.9 75.1 518 325-983 127-746 (1233)
8 PF12348 CLASP_N: CLASP N term 99.7 6E-17 1.3E-21 189.6 18.1 208 853-1063 7-227 (228)
9 KOG1242 Protein containing ada 99.7 6.5E-14 1.4E-18 173.3 33.6 515 138-815 27-550 (569)
10 KOG2023 Nuclear transport rece 99.6 8.7E-12 1.9E-16 152.3 46.1 692 322-1066 125-882 (885)
11 KOG2023 Nuclear transport rece 99.6 8.2E-12 1.8E-16 152.5 44.0 669 67-999 143-854 (885)
12 KOG2956 CLIP-associating prote 99.6 6.5E-13 1.4E-17 158.1 27.3 387 681-1072 60-508 (516)
13 PLN03200 cellulose synthase-in 99.5 1.9E-07 4.1E-12 132.2 78.3 773 52-1041 14-860 (2102)
14 KOG1242 Protein containing ada 99.5 2E-11 4.3E-16 151.6 31.5 350 46-481 90-451 (569)
15 KOG0213 Splicing factor 3b, su 99.5 3.2E-10 7E-15 139.4 40.8 581 336-1038 452-1062(1172)
16 KOG0915 Uncharacterized conser 99.5 3E-10 6.5E-15 150.1 41.7 566 403-1042 818-1428(1702)
17 KOG1241 Karyopherin (importin) 99.4 5.3E-10 1.2E-14 139.6 38.2 587 300-1049 145-819 (859)
18 PLN03200 cellulose synthase-in 99.4 3.3E-07 7.2E-12 129.8 64.8 807 288-1388 16-887 (2102)
19 COG5215 KAP95 Karyopherin (imp 99.2 5.3E-08 1.1E-12 117.9 39.3 498 329-1042 181-727 (858)
20 KOG0213 Splicing factor 3b, su 99.2 3.6E-07 7.8E-12 113.4 47.0 572 326-1052 512-1118(1172)
21 KOG2956 CLIP-associating prote 99.2 9.1E-09 2E-13 123.4 31.9 211 290-503 291-506 (516)
22 KOG1241 Karyopherin (importin) 99.2 8.9E-06 1.9E-10 102.9 58.8 565 295-1041 227-855 (859)
23 KOG0212 Uncharacterized conser 99.2 2.1E-08 4.6E-13 121.9 30.8 378 603-1042 2-407 (675)
24 KOG0212 Uncharacterized conser 99.1 4.9E-08 1.1E-12 118.8 32.8 400 717-1297 42-456 (675)
25 COG5181 HSH155 U2 snRNP splice 99.1 4.2E-08 9E-13 119.4 31.9 190 861-1052 696-923 (975)
26 KOG0211 Protein phosphatase 2A 99.0 8.3E-07 1.8E-11 116.9 39.7 562 294-1047 91-670 (759)
27 KOG0915 Uncharacterized conser 99.0 9.3E-06 2E-10 109.0 49.0 286 127-475 817-1111(1702)
28 COG5181 HSH155 U2 snRNP splice 99.0 1.1E-05 2.3E-10 99.1 43.0 691 16-964 173-946 (975)
29 KOG2933 Uncharacterized conser 98.8 1.9E-08 4.2E-13 115.6 12.9 184 290-475 93-278 (334)
30 PRK13800 putative oxidoreducta 98.7 1.3E-06 2.9E-11 121.4 27.9 270 687-1037 624-895 (897)
31 KOG1248 Uncharacterized conser 98.7 0.00072 1.6E-08 90.4 50.2 656 315-1058 82-873 (1176)
32 PF01602 Adaptin_N: Adaptin N 98.7 4E-05 8.8E-10 101.5 40.0 460 291-923 48-523 (526)
33 PF01602 Adaptin_N: Adaptin N 98.7 0.00011 2.4E-09 97.4 43.5 501 292-998 11-520 (526)
34 KOG0211 Protein phosphatase 2A 98.6 3.7E-05 8.1E-10 101.6 35.9 372 653-1048 247-632 (759)
35 PRK13800 putative oxidoreducta 98.6 2.4E-06 5.2E-11 119.0 26.1 242 718-1039 622-865 (897)
36 PRK09687 putative lyase; Provi 98.6 2.4E-06 5.3E-11 102.6 22.5 146 857-1037 132-278 (280)
37 COG5215 KAP95 Karyopherin (imp 98.6 0.00085 1.8E-08 82.6 43.4 467 332-980 270-780 (858)
38 PTZ00429 beta-adaptin; Provisi 98.6 0.00075 1.6E-08 90.7 46.5 94 371-471 37-131 (746)
39 KOG1248 Uncharacterized conser 98.5 0.016 3.5E-07 78.1 67.0 758 128-1070 93-923 (1176)
40 PRK09687 putative lyase; Provi 98.4 2.4E-05 5.2E-10 94.2 21.3 149 862-1039 100-248 (280)
41 PTZ00429 beta-adaptin; Provisi 98.3 0.00052 1.1E-08 92.1 34.9 358 605-1044 36-400 (746)
42 KOG2933 Uncharacterized conser 98.2 9.3E-06 2E-10 94.0 12.9 180 857-1039 92-275 (334)
43 KOG1943 Beta-tubulin folding c 97.8 0.24 5.3E-06 66.6 42.8 596 325-1071 341-987 (1133)
44 KOG1060 Vesicle coat complex A 97.6 0.1 2.2E-06 67.6 33.9 84 382-472 52-135 (968)
45 PF10508 Proteasom_PSMB: Prote 97.6 0.12 2.6E-06 68.0 35.6 396 722-1243 43-465 (503)
46 PF05004 IFRD: Interferon-rela 97.6 0.0061 1.3E-07 74.6 22.0 190 289-478 47-261 (309)
47 KOG1240 Protein kinase contain 97.5 0.0043 9.3E-08 82.8 20.7 301 604-981 425-745 (1431)
48 KOG1240 Protein kinase contain 97.4 0.0095 2.1E-07 79.7 21.8 275 697-1006 438-729 (1431)
49 KOG2259 Uncharacterized conser 97.4 0.037 8.1E-07 70.2 25.1 336 653-1021 128-492 (823)
50 PF10508 Proteasom_PSMB: Prote 97.3 0.25 5.4E-06 65.1 33.3 185 291-475 208-421 (503)
51 KOG0166 Karyopherin (importin) 97.3 0.055 1.2E-06 68.8 25.5 180 289-469 70-261 (514)
52 KOG1943 Beta-tubulin folding c 97.3 1.8 3.8E-05 58.9 42.8 374 932-1355 337-742 (1133)
53 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0013 2.9E-08 65.9 8.9 93 869-963 2-94 (97)
54 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.002 4.3E-08 64.7 8.6 93 301-394 2-95 (97)
55 KOG1060 Vesicle coat complex A 97.1 0.17 3.6E-06 65.8 27.0 375 604-1045 38-425 (968)
56 KOG1062 Vesicle coat complex A 96.9 2.8 6E-05 55.5 36.6 124 347-477 87-211 (866)
57 KOG1061 Vesicle coat complex A 96.9 1.1 2.5E-05 58.9 32.4 129 893-1031 348-479 (734)
58 KOG1058 Vesicle coat complex C 96.9 0.66 1.4E-05 60.3 29.4 345 856-1289 23-429 (948)
59 KOG0166 Karyopherin (importin) 96.8 0.09 1.9E-06 67.0 21.8 365 856-1267 69-458 (514)
60 PF12717 Cnd1: non-SMC mitotic 96.8 0.019 4.1E-07 64.8 14.6 130 866-1003 1-140 (178)
61 PF12460 MMS19_C: RNAPII trans 96.8 0.66 1.4E-05 59.8 30.3 191 857-1055 193-407 (415)
62 KOG1020 Sister chromatid cohes 96.8 5.2 0.00011 56.4 40.7 95 908-1002 1185-1295(1692)
63 PF12460 MMS19_C: RNAPII trans 96.8 0.09 2E-06 67.6 22.0 191 295-490 200-409 (415)
64 KOG1061 Vesicle coat complex A 96.7 0.1 2.2E-06 68.2 21.8 364 10-479 120-491 (734)
65 KOG1059 Vesicle coat complex A 96.6 0.86 1.9E-05 59.1 27.5 261 156-473 133-400 (877)
66 COG1413 FOG: HEAT repeat [Ener 96.5 0.43 9.3E-06 59.6 25.1 155 865-1052 161-315 (335)
67 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0061 1.3E-07 54.5 5.6 55 417-472 1-55 (55)
68 PF12717 Cnd1: non-SMC mitotic 96.4 0.078 1.7E-06 59.9 15.9 109 338-450 1-110 (178)
69 PF13646 HEAT_2: HEAT repeats; 96.4 0.021 4.6E-07 56.1 10.0 86 368-470 1-88 (88)
70 KOG2259 Uncharacterized conser 96.3 0.23 4.9E-06 63.5 20.3 277 695-1002 211-511 (823)
71 KOG1062 Vesicle coat complex A 96.3 1.6 3.6E-05 57.5 28.3 250 728-1007 152-419 (866)
72 KOG4535 HEAT and armadillo rep 96.3 0.1 2.2E-06 63.9 16.3 407 19-470 4-458 (728)
73 PF05004 IFRD: Interferon-rela 96.2 0.13 2.8E-06 63.2 17.7 184 857-1044 47-260 (309)
74 PF14500 MMS19_N: Dos2-interac 96.2 1.5 3.3E-05 52.6 25.8 241 171-494 2-257 (262)
75 PF13251 DUF4042: Domain of un 96.1 0.043 9.2E-07 61.6 11.2 138 340-477 1-177 (182)
76 cd00020 ARM Armadillo/beta-cat 96.0 0.03 6.5E-07 58.0 9.4 107 366-473 7-119 (120)
77 PF13646 HEAT_2: HEAT repeats; 96.0 0.02 4.3E-07 56.3 7.6 85 856-961 2-88 (88)
78 KOG1059 Vesicle coat complex A 96.0 0.57 1.2E-05 60.6 21.8 181 854-1046 219-406 (877)
79 KOG4535 HEAT and armadillo rep 96.0 5 0.00011 50.0 28.6 200 757-969 390-607 (728)
80 cd00020 ARM Armadillo/beta-cat 96.0 0.013 2.9E-07 60.6 6.7 109 855-964 9-119 (120)
81 PF02985 HEAT: HEAT repeat; I 96.0 0.0096 2.1E-07 46.6 4.1 30 446-475 1-30 (31)
82 PF12231 Rif1_N: Rap1-interact 96.0 2.3 5E-05 53.9 27.6 313 609-964 1-351 (372)
83 KOG0413 Uncharacterized conser 95.9 7.6 0.00016 52.1 31.2 129 909-1045 945-1077(1529)
84 KOG2032 Uncharacterized conser 95.9 0.13 2.7E-06 64.1 15.1 190 858-1053 222-428 (533)
85 KOG2032 Uncharacterized conser 95.7 0.37 7.9E-06 60.2 17.8 210 289-499 221-441 (533)
86 PF10274 ParcG: Parkin co-regu 95.5 0.068 1.5E-06 59.5 9.7 119 854-973 39-172 (183)
87 PF13513 HEAT_EZ: HEAT-like re 95.4 0.019 4.1E-07 51.3 4.1 55 909-963 1-55 (55)
88 KOG1058 Vesicle coat complex C 95.3 4.8 0.0001 52.8 26.2 131 905-1044 292-428 (948)
89 KOG2025 Chromosome condensatio 95.1 0.21 4.6E-06 64.2 13.5 194 849-1056 81-274 (892)
90 KOG0392 SNF2 family DNA-depend 95.0 0.16 3.4E-06 68.9 12.3 156 911-1069 792-960 (1549)
91 TIGR02270 conserved hypothetic 95.0 1.1 2.4E-05 57.1 19.5 146 856-1039 120-265 (410)
92 TIGR02270 conserved hypothetic 94.9 3.3 7.2E-05 52.9 23.7 149 857-1047 151-299 (410)
93 cd03567 VHS_GGA VHS domain fam 94.9 0.44 9.5E-06 51.3 13.4 110 862-980 14-131 (139)
94 COG1413 FOG: HEAT repeat [Ener 94.9 0.43 9.4E-06 59.5 15.7 171 856-1059 46-229 (335)
95 KOG1020 Sister chromatid cohes 94.8 31 0.00067 49.3 46.0 51 933-983 1336-1388(1692)
96 KOG0392 SNF2 family DNA-depend 94.6 0.19 4.2E-06 68.1 11.7 200 300-502 748-960 (1549)
97 KOG1077 Vesicle coat complex A 94.4 11 0.00023 49.4 25.6 131 892-1026 326-458 (938)
98 KOG4524 Uncharacterized conser 94.4 13 0.00028 50.6 27.2 116 342-458 565-687 (1014)
99 cd03568 VHS_STAM VHS domain fa 94.3 0.55 1.2E-05 51.0 12.7 100 862-970 13-115 (144)
100 PF02985 HEAT: HEAT repeat; I 94.3 0.06 1.3E-06 42.1 3.9 29 1014-1042 2-30 (31)
101 KOG4524 Uncharacterized conser 94.3 10 0.00022 51.6 26.1 87 292-378 810-901 (1014)
102 KOG1077 Vesicle coat complex A 94.2 15 0.00032 48.3 26.2 307 94-436 112-437 (938)
103 COG5218 YCG1 Chromosome conden 94.2 1.1 2.4E-05 56.6 16.1 202 854-1070 92-295 (885)
104 KOG1078 Vesicle coat complex C 94.2 13 0.00028 49.5 26.1 51 987-1040 480-531 (865)
105 COG5096 Vesicle coat complex, 94.2 23 0.0005 48.1 29.3 165 862-1041 28-195 (757)
106 cd03561 VHS VHS domain family; 94.1 0.67 1.4E-05 49.7 12.9 100 862-970 13-117 (133)
107 PF04118 Dopey_N: Dopey, N-ter 93.8 0.96 2.1E-05 55.2 14.8 166 870-1045 72-255 (307)
108 cd03569 VHS_Hrs_Vps27p VHS dom 93.4 1.1 2.4E-05 48.5 13.1 100 863-971 18-120 (142)
109 KOG1967 DNA repair/transcripti 93.4 0.36 7.8E-06 64.1 10.6 146 323-473 865-1023(1030)
110 smart00288 VHS Domain present 93.3 1 2.2E-05 48.3 12.4 101 862-971 13-117 (133)
111 COG5096 Vesicle coat complex, 93.3 2.3 4.9E-05 57.2 17.9 166 294-474 28-195 (757)
112 PF14500 MMS19_N: Dos2-interac 93.2 15 0.00033 44.1 23.3 186 866-1056 53-252 (262)
113 PF00790 VHS: VHS domain; Int 93.1 0.5 1.1E-05 51.2 9.7 108 862-978 18-131 (140)
114 COG5064 SRP1 Karyopherin (impo 93.0 3.8 8.3E-05 48.9 17.1 302 856-1200 74-399 (526)
115 KOG1525 Sister chromatid cohes 92.5 18 0.00038 52.0 25.5 236 663-966 164-406 (1266)
116 KOG1949 Uncharacterized conser 92.2 4.8 0.0001 52.3 17.6 184 767-1002 182-371 (1005)
117 COG5064 SRP1 Karyopherin (impo 91.9 2.2 4.7E-05 50.8 13.3 304 604-924 74-398 (526)
118 cd00197 VHS_ENTH_ANTH VHS, ENT 91.9 1.3 2.9E-05 46.1 10.8 88 872-964 19-114 (115)
119 COG5240 SEC21 Vesicle coat com 91.7 51 0.0011 42.5 38.4 120 345-478 41-167 (898)
120 PF12719 Cnd3: Nuclear condens 91.0 2.4 5.1E-05 52.2 13.6 126 71-196 2-142 (298)
121 PF11865 DUF3385: Domain of un 90.9 1.6 3.5E-05 48.4 10.7 146 321-477 6-160 (160)
122 KOG2160 Armadillo/beta-catenin 90.9 5.8 0.00013 48.6 16.0 175 864-1042 94-283 (342)
123 PF04118 Dopey_N: Dopey, N-ter 90.7 7.5 0.00016 47.6 17.1 174 295-471 21-251 (307)
124 PF13251 DUF4042: Domain of un 90.7 1.7 3.7E-05 49.0 10.7 133 910-1043 1-176 (182)
125 PF10274 ParcG: Parkin co-regu 90.6 1.3 2.7E-05 49.7 9.4 90 400-490 35-127 (183)
126 KOG1243 Protein kinase [Genera 90.3 0.87 1.9E-05 59.5 9.0 185 852-1045 329-519 (690)
127 KOG1967 DNA repair/transcripti 90.3 0.98 2.1E-05 60.2 9.4 143 851-996 865-1018(1030)
128 KOG4224 Armadillo repeat prote 90.2 3.3 7.1E-05 49.9 12.7 186 854-1042 252-447 (550)
129 KOG4653 Uncharacterized conser 89.9 26 0.00056 47.3 21.4 198 719-976 729-928 (982)
130 PF12719 Cnd3: Nuclear condens 89.8 4.4 9.6E-05 49.8 14.4 126 350-475 8-144 (298)
131 KOG0168 Putative ubiquitin fus 89.7 9.5 0.00021 50.9 17.3 176 298-477 181-367 (1051)
132 cd03565 VHS_Tom1 VHS domain fa 89.6 2.3 5E-05 46.1 10.3 106 862-976 14-126 (141)
133 cd03569 VHS_Hrs_Vps27p VHS dom 89.6 1.6 3.5E-05 47.3 9.1 77 125-201 38-118 (142)
134 KOG1243 Protein kinase [Genera 89.5 1.3 2.9E-05 57.8 9.7 173 289-473 258-436 (690)
135 PF12231 Rif1_N: Rap1-interact 89.4 73 0.0016 40.5 26.8 313 20-395 2-352 (372)
136 PF04826 Arm_2: Armadillo-like 89.1 5.2 0.00011 47.8 13.7 176 8-188 50-253 (254)
137 PF14664 RICTOR_N: Rapamycin-i 88.9 70 0.0015 40.6 24.1 169 865-1037 80-265 (371)
138 KOG0803 Predicted E3 ubiquitin 88.6 5.2 0.00011 57.1 15.1 202 857-1058 45-280 (1312)
139 KOG0946 ER-Golgi vesicle-tethe 87.9 1.1E+02 0.0023 41.4 24.6 117 681-798 19-161 (970)
140 cd03568 VHS_STAM VHS domain fa 87.8 7.6 0.00016 42.3 12.8 82 398-479 32-115 (144)
141 KOG2549 Transcription initiati 87.3 10 0.00022 48.6 15.1 178 858-1045 212-419 (576)
142 COG5240 SEC21 Vesicle coat com 87.3 1E+02 0.0023 39.9 25.6 103 659-787 447-554 (898)
143 PF08506 Cse1: Cse1; InterPro 87.2 55 0.0012 41.5 21.7 93 865-960 267-370 (370)
144 KOG1087 Cytosolic sorting prot 87.0 3.1 6.8E-05 53.3 10.6 108 861-977 13-125 (470)
145 KOG2160 Armadillo/beta-catenin 86.9 35 0.00075 42.1 18.7 180 295-479 93-287 (342)
146 KOG1078 Vesicle coat complex C 86.7 1.4E+02 0.0029 40.6 33.4 95 687-787 432-531 (865)
147 KOG1525 Sister chromatid cohes 86.1 2E+02 0.0044 41.9 45.6 268 168-473 48-328 (1266)
148 smart00288 VHS Domain present 85.5 2.6 5.5E-05 45.3 7.6 76 125-200 34-114 (133)
149 PF00790 VHS: VHS domain; Int 85.3 11 0.00024 40.8 12.5 96 294-396 18-119 (140)
150 cd00197 VHS_ENTH_ANTH VHS, ENT 85.2 5.7 0.00012 41.4 10.0 88 304-394 19-114 (115)
151 KOG2025 Chromosome condensatio 84.8 22 0.00047 46.9 16.2 195 292-502 92-292 (892)
152 PF08623 TIP120: TATA-binding 84.3 6.1 0.00013 44.0 10.0 91 362-454 5-115 (169)
153 PF12830 Nipped-B_C: Sister ch 83.9 13 0.00028 42.4 12.9 115 363-477 5-122 (187)
154 PLN03076 ARF guanine nucleotid 83.7 36 0.00078 51.0 19.9 182 297-478 1149-1380(1780)
155 cd03561 VHS VHS domain family; 83.4 18 0.0004 38.8 13.1 82 398-479 32-117 (133)
156 PF13001 Ecm29: Proteasome sta 83.4 1.4E+02 0.0029 39.8 23.8 116 927-1043 14-136 (501)
157 cd03567 VHS_GGA VHS domain fam 83.4 19 0.0004 39.1 13.0 96 294-396 14-117 (139)
158 KOG2149 Uncharacterized conser 83.4 19 0.00041 45.0 14.4 110 329-438 62-176 (393)
159 KOG2062 26S proteasome regulat 83.1 11 0.00025 49.5 12.8 161 860-1037 526-690 (929)
160 cd03572 ENTH_epsin_related ENT 83.0 6.5 0.00014 41.4 9.0 88 873-965 21-119 (122)
161 COG5218 YCG1 Chromosome conden 82.9 16 0.00036 46.8 13.7 197 290-501 96-293 (885)
162 KOG4653 Uncharacterized conser 82.8 10 0.00022 50.8 12.5 180 856-1047 730-924 (982)
163 cd03572 ENTH_epsin_related ENT 82.1 7.1 0.00015 41.1 8.9 74 399-473 34-118 (122)
164 KOG1949 Uncharacterized conser 82.0 7.6 0.00016 50.6 10.6 139 902-1041 181-331 (1005)
165 PF08506 Cse1: Cse1; InterPro 81.9 14 0.00031 46.7 13.2 52 414-469 319-370 (370)
166 cd08050 TAF6 TATA Binding Prot 81.7 16 0.00035 45.8 13.6 128 861-998 186-336 (343)
167 KOG0803 Predicted E3 ubiquitin 81.5 23 0.00051 50.9 16.2 190 290-479 46-268 (1312)
168 KOG0889 Histone acetyltransfer 81.3 3.1E+02 0.0067 43.6 27.3 168 754-968 980-1158(3550)
169 KOG0168 Putative ubiquitin fus 81.2 70 0.0015 43.4 18.9 179 604-789 170-365 (1051)
170 PF10363 DUF2435: Protein of u 81.0 8.3 0.00018 38.6 8.6 84 857-949 7-90 (92)
171 COG5116 RPN2 26S proteasome re 81.0 5.9 0.00013 50.2 9.1 116 334-460 561-677 (926)
172 PF05918 API5: Apoptosis inhib 81.0 26 0.00057 46.1 15.3 126 324-456 58-189 (556)
173 PF10521 DUF2454: Protein of u 80.9 21 0.00045 43.6 13.9 138 321-459 115-279 (282)
174 KOG0414 Chromosome condensatio 80.8 21 0.00046 49.6 14.7 131 336-475 934-1065(1251)
175 PF04826 Arm_2: Armadillo-like 80.8 22 0.00048 42.5 13.7 178 297-479 25-210 (254)
176 KOG2149 Uncharacterized conser 80.7 9.3 0.0002 47.5 10.6 112 856-968 61-173 (393)
177 KOG2549 Transcription initiati 80.5 25 0.00055 45.3 14.4 176 294-477 216-418 (576)
178 PF10363 DUF2435: Protein of u 80.4 7.1 0.00015 39.1 7.9 80 405-486 5-84 (92)
179 PF12830 Nipped-B_C: Sister ch 80.3 5.9 0.00013 45.2 8.4 70 128-200 8-77 (187)
180 PF11640 TAN: Telomere-length 79.9 15 0.00032 40.6 11.1 107 857-963 8-135 (155)
181 PF11865 DUF3385: Domain of un 79.7 12 0.00027 41.4 10.4 71 896-966 87-158 (160)
182 PF08167 RIX1: rRNA processing 79.6 40 0.00087 37.6 14.5 115 321-437 21-148 (165)
183 PF05804 KAP: Kinesin-associat 79.5 22 0.00047 48.5 14.4 167 306-476 471-651 (708)
184 KOG3961 Uncharacterized conser 79.3 8.6 0.00019 43.5 8.7 116 854-971 115-245 (262)
185 PF08167 RIX1: rRNA processing 79.1 11 0.00024 42.0 9.9 111 289-401 29-149 (165)
186 PLN03076 ARF guanine nucleotid 79.0 2.7E+02 0.0059 42.4 25.9 295 604-932 1140-1497(1780)
187 PF08064 UME: UME (NUC010) dom 78.5 15 0.00033 37.8 9.9 73 414-489 26-98 (107)
188 KOG1087 Cytosolic sorting prot 78.3 8.4 0.00018 49.6 9.6 97 293-396 13-113 (470)
189 PF13001 Ecm29: Proteasome sta 78.2 2.4E+02 0.0053 37.4 36.4 116 357-476 14-136 (501)
190 KOG2199 Signal transducing ada 78.1 9.9 0.00022 46.6 9.4 79 893-971 43-124 (462)
191 PF01603 B56: Protein phosphat 77.5 48 0.001 42.7 16.3 202 290-498 138-343 (409)
192 PF11864 DUF3384: Domain of un 77.3 1.7E+02 0.0037 38.5 21.5 132 654-787 188-329 (464)
193 KOG1924 RhoA GTPase effector D 76.7 2E+02 0.0043 38.8 20.6 46 383-431 270-316 (1102)
194 COG5116 RPN2 26S proteasome re 76.0 18 0.00039 46.2 11.0 163 297-478 476-654 (926)
195 PF05918 API5: Apoptosis inhib 75.8 30 0.00065 45.6 13.6 131 339-478 36-166 (556)
196 PF10521 DUF2454: Protein of u 75.2 26 0.00057 42.7 12.4 159 21-181 85-278 (282)
197 PF11698 V-ATPase_H_C: V-ATPas 73.4 22 0.00047 37.3 9.3 79 886-966 35-116 (119)
198 cd03565 VHS_Tom1 VHS domain fa 72.8 35 0.00077 37.0 11.4 96 294-396 14-116 (141)
199 PF08161 NUC173: NUC173 domain 72.4 15 0.00032 42.3 8.8 112 909-1021 14-125 (198)
200 KOG4825 Component of synaptic 71.3 36 0.00079 42.3 11.8 213 600-818 392-633 (666)
201 KOG2062 26S proteasome regulat 71.2 31 0.00068 45.7 11.9 134 329-478 523-657 (929)
202 PF12074 DUF3554: Domain of un 69.3 3E+02 0.0066 34.4 22.2 95 717-814 22-117 (339)
203 PF11698 V-ATPase_H_C: V-ATPas 69.2 24 0.00053 37.0 8.6 72 403-475 43-116 (119)
204 PF05536 Neurochondrin: Neuroc 69.2 59 0.0013 43.5 14.5 173 305-479 77-266 (543)
205 KOG4224 Armadillo repeat prote 68.8 49 0.0011 40.5 11.9 180 292-473 215-404 (550)
206 KOG2137 Protein kinase [Signal 68.3 63 0.0014 43.3 14.0 166 319-499 382-552 (700)
207 KOG4413 26S proteasome regulat 68.2 16 0.00034 43.8 7.7 88 386-473 63-156 (524)
208 COG5098 Chromosome condensatio 67.8 28 0.0006 45.6 10.2 111 857-968 303-418 (1128)
209 KOG1991 Nuclear transport rece 66.6 5.3E+02 0.012 36.3 36.6 188 302-493 389-591 (1010)
210 KOG1293 Proteins containing ar 66.1 2.3E+02 0.0051 37.7 18.0 131 340-473 392-532 (678)
211 KOG1822 Uncharacterized conser 65.8 7.3E+02 0.016 37.6 24.4 296 611-967 813-1129(2067)
212 PF08064 UME: UME (NUC010) dom 65.7 45 0.00098 34.4 9.8 77 896-974 12-92 (107)
213 KOG2011 Sister chromatid cohes 65.6 3.4E+02 0.0074 38.6 20.5 132 899-1036 291-430 (1048)
214 smart00802 UME Domain in UVSB 65.5 40 0.00088 34.8 9.3 76 895-972 11-90 (107)
215 COG5095 TAF6 Transcription ini 65.0 86 0.0019 37.4 12.7 103 604-716 201-321 (450)
216 COG5098 Chromosome condensatio 64.9 80 0.0017 41.7 13.4 105 332-436 306-419 (1128)
217 KOG2011 Sister chromatid cohes 64.8 27 0.00059 48.7 10.1 78 1303-1381 299-378 (1048)
218 PF05536 Neurochondrin: Neuroc 64.7 4.8E+02 0.01 35.1 27.3 152 893-1048 96-268 (543)
219 PF08767 CRM1_C: CRM1 C termin 61.5 84 0.0018 39.1 13.0 134 301-436 43-198 (319)
220 COG5095 TAF6 Transcription ini 60.6 1.1E+02 0.0023 36.7 12.4 112 1168-1289 196-320 (450)
221 PF11640 TAN: Telomere-length 60.5 1E+02 0.0022 34.1 12.1 47 289-335 8-58 (155)
222 PF12765 Cohesin_HEAT: HEAT re 60.4 8.9 0.00019 32.5 2.9 26 444-469 17-42 (42)
223 KOG1851 Uncharacterized conser 59.2 8.6E+02 0.019 36.2 23.7 95 952-1047 1503-1604(1710)
224 PF14664 RICTOR_N: Rapamycin-i 58.7 2E+02 0.0043 36.6 15.8 173 298-472 81-267 (371)
225 smart00802 UME Domain in UVSB 58.3 62 0.0013 33.5 9.2 71 416-489 28-98 (107)
226 KOG0413 Uncharacterized conser 58.0 7.2E+02 0.015 34.9 31.1 182 854-1040 473-684 (1529)
227 PF12397 U3snoRNP10: U3 small 58.0 36 0.00077 35.8 7.8 83 1290-1375 5-95 (121)
228 PF08623 TIP120: TATA-binding 57.1 50 0.0011 36.9 8.8 74 868-945 42-115 (169)
229 PF08161 NUC173: NUC173 domain 55.4 1.1E+02 0.0023 35.4 11.5 107 341-452 16-124 (198)
230 KOG2199 Signal transducing ada 54.0 1.4E+02 0.0031 37.2 12.4 90 399-488 41-132 (462)
231 cd08050 TAF6 TATA Binding Prot 53.6 1.4E+02 0.003 37.6 13.2 111 1174-1290 182-302 (343)
232 PF12783 Sec7_N: Guanine nucle 53.5 82 0.0018 35.2 10.2 100 866-965 35-146 (168)
233 KOG2137 Protein kinase [Signal 51.6 2.8E+02 0.006 37.6 15.5 146 322-475 345-497 (700)
234 KOG0946 ER-Golgi vesicle-tethe 51.3 1.6E+02 0.0035 39.8 13.1 167 289-477 26-198 (970)
235 COG5656 SXM1 Importin, protein 51.1 8.2E+02 0.018 33.5 26.0 70 972-1043 461-530 (970)
236 PF12074 DUF3554: Domain of un 50.9 1.4E+02 0.003 37.5 12.7 95 366-460 22-122 (339)
237 PF08767 CRM1_C: CRM1 C termin 50.4 3.8E+02 0.0082 33.4 16.2 114 365-478 70-198 (319)
238 PF14228 MOR2-PAG1_mid: Cell m 50.4 1.9E+02 0.004 41.9 14.7 82 1190-1285 490-572 (1120)
239 KOG2021 Nuclear mRNA export fa 49.5 8.7E+02 0.019 33.3 24.9 115 683-800 6-132 (980)
240 PF00514 Arm: Armadillo/beta-c 49.2 29 0.00063 28.8 4.3 29 445-473 12-40 (41)
241 KOG1822 Uncharacterized conser 48.7 2E+02 0.0043 42.8 14.3 133 334-469 885-1027(2067)
242 PF08045 CDC14: Cell division 47.8 2.1E+02 0.0046 34.3 12.6 89 1276-1365 111-209 (257)
243 PF01347 Vitellogenin_N: Lipop 47.7 72 0.0016 43.5 10.3 134 325-469 431-584 (618)
244 KOG4199 Uncharacterized conser 47.7 4.4E+02 0.0096 32.6 14.9 175 297-481 119-320 (461)
245 PF05804 KAP: Kinesin-associat 46.7 1.3E+02 0.0028 41.4 11.9 144 321-469 246-394 (708)
246 PF11841 DUF3361: Domain of un 46.5 4.6E+02 0.0099 29.3 14.3 107 381-488 32-145 (160)
247 PF01347 Vitellogenin_N: Lipop 45.9 9.5E+02 0.02 32.7 21.1 113 863-997 500-617 (618)
248 PF03378 CAS_CSE1: CAS/CSE pro 45.3 4.3E+02 0.0092 34.5 15.9 207 844-1053 14-241 (435)
249 PF08389 Xpo1: Exportin 1-like 45.3 1.5E+02 0.0032 31.8 10.3 123 321-469 22-148 (148)
250 KOG1789 Endocytosis protein RM 44.8 1.1E+03 0.025 33.4 24.6 160 29-199 1743-1921(2235)
251 KOG4825 Component of synaptic 44.7 1.8E+02 0.004 36.6 11.4 217 16-234 398-638 (666)
252 PF12765 Cohesin_HEAT: HEAT re 44.4 34 0.00073 29.0 3.9 34 159-192 9-42 (42)
253 PF11701 UNC45-central: Myosin 42.9 44 0.00096 37.0 5.8 128 63-193 16-155 (157)
254 KOG0414 Chromosome condensatio 42.7 1.3E+03 0.028 33.4 61.3 140 893-1040 917-1063(1251)
255 KOG1517 Guanine nucleotide bin 41.2 96 0.0021 43.0 9.1 67 410-476 606-673 (1387)
256 KOG2753 Uncharacterized conser 41.1 7.9E+02 0.017 30.5 16.5 96 947-1042 117-217 (378)
257 PF03224 V-ATPase_H_N: V-ATPas 41.0 7.6E+02 0.017 30.5 16.9 104 289-394 109-223 (312)
258 PF12530 DUF3730: Protein of u 40.8 5.8E+02 0.013 30.2 15.1 118 338-459 97-217 (234)
259 cd00256 VATPase_H VATPase_H, r 40.6 4E+02 0.0086 34.6 14.3 149 324-474 227-425 (429)
260 PF08569 Mo25: Mo25-like; Int 40.5 1.9E+02 0.0041 36.2 11.3 118 289-408 168-295 (335)
261 KOG0891 DNA-dependent protein 39.6 2E+03 0.043 34.7 39.6 109 888-998 642-759 (2341)
262 PF04388 Hamartin: Hamartin pr 38.5 4.5E+02 0.0098 36.3 15.3 115 366-490 39-155 (668)
263 PF11935 DUF3453: Domain of un 37.8 7.7E+02 0.017 29.4 15.5 73 334-434 2-74 (239)
264 PF12243 CTK3: CTD kinase subu 37.2 4.5E+02 0.0097 28.7 11.9 105 364-473 6-118 (139)
265 PF14225 MOR2-PAG1_C: Cell mor 36.5 6.2E+02 0.013 30.6 14.4 138 899-1044 115-257 (262)
266 KOG1566 Conserved protein Mo25 36.4 6E+02 0.013 31.3 13.8 179 14-196 23-240 (342)
267 PF12333 Ipi1_N: Rix1 complex 36.1 1.1E+02 0.0024 31.3 7.0 37 401-437 9-45 (102)
268 smart00582 RPR domain present 35.9 2.2E+02 0.0049 29.7 9.6 100 370-474 4-107 (121)
269 PF10441 Urb2: Urb2/Npa2 famil 35.2 8E+02 0.017 28.8 18.8 47 455-501 167-213 (223)
270 smart00638 LPD_N Lipoprotein N 34.8 4.1E+02 0.0089 35.9 14.3 136 894-1036 392-540 (574)
271 KOG4413 26S proteasome regulat 34.8 7.7E+02 0.017 30.3 14.1 151 324-476 81-245 (524)
272 COG3682 Predicted transcriptio 34.0 50 0.0011 34.8 4.0 43 1640-1705 9-51 (123)
273 PF11701 UNC45-central: Myosin 33.8 4.4E+02 0.0095 29.2 11.8 125 341-470 21-155 (157)
274 PF08569 Mo25: Mo25-like; Int 33.6 1.1E+03 0.023 29.8 18.7 202 290-502 81-308 (335)
275 KOG1837 Uncharacterized conser 33.3 1.8E+02 0.0039 42.4 10.2 70 728-798 1551-1621(1621)
276 KOG0567 HEAT repeat-containing 32.0 3.7E+02 0.0081 32.3 10.9 87 1259-1358 190-278 (289)
277 cd03562 CID CID (CTD-Interacti 31.6 4.5E+02 0.0097 27.2 10.9 69 402-470 36-104 (114)
278 KOG1517 Guanine nucleotide bin 31.0 3.3E+02 0.0071 38.3 11.5 108 325-432 599-732 (1387)
279 PF08389 Xpo1: Exportin 1-like 30.6 2.7E+02 0.0059 29.7 9.5 96 381-477 3-118 (148)
280 PF06371 Drf_GBD: Diaphanous G 30.6 56 0.0012 36.9 4.3 90 107-196 90-186 (187)
281 PF12612 TFCD_C: Tubulin foldi 30.2 7.6E+02 0.016 28.2 13.4 129 23-158 19-159 (193)
282 PF00514 Arm: Armadillo/beta-c 29.6 73 0.0016 26.4 3.7 28 169-196 13-40 (41)
283 PF12422 Condensin2nSMC: Conde 29.3 2.8E+02 0.006 30.6 9.2 28 1011-1038 117-145 (152)
284 PF03224 V-ATPase_H_N: V-ATPas 29.1 2.3E+02 0.0051 35.0 9.7 111 363-475 56-180 (312)
285 COG5231 VMA13 Vacuolar H+-ATPa 29.1 1.2E+03 0.026 28.9 15.9 68 1291-1358 356-426 (432)
286 smart00638 LPD_N Lipoprotein N 28.7 7E+02 0.015 33.7 14.9 121 344-479 375-514 (574)
287 KOG1851 Uncharacterized conser 28.5 2.3E+03 0.05 32.1 25.0 75 402-476 1525-1600(1710)
288 PF03378 CAS_CSE1: CAS/CSE pro 27.8 7.2E+02 0.016 32.4 14.0 130 348-478 49-192 (435)
289 PF12612 TFCD_C: Tubulin foldi 27.6 4.3E+02 0.0092 30.3 10.8 120 362-488 3-132 (193)
290 PF01603 B56: Protein phosphat 27.1 1.5E+03 0.032 29.3 17.7 199 604-815 136-347 (409)
291 PF09324 DUF1981: Domain of un 26.8 2E+02 0.0044 28.4 6.8 69 894-962 16-85 (86)
292 PF14225 MOR2-PAG1_C: Cell mor 26.8 1.2E+03 0.026 28.2 16.3 178 291-478 70-258 (262)
293 PF12783 Sec7_N: Guanine nucle 26.8 4.7E+02 0.01 29.0 10.8 100 297-396 34-147 (168)
294 KOG0567 HEAT repeat-containing 26.7 3.3E+02 0.0071 32.7 9.3 90 938-1039 189-278 (289)
295 KOG4199 Uncharacterized conser 26.4 1.3E+03 0.027 28.9 14.1 138 330-472 288-442 (461)
296 KOG2286 Exocyst complex subuni 25.6 1.9E+03 0.04 30.3 17.2 92 1298-1390 550-652 (667)
297 PF01417 ENTH: ENTH domain; I 25.5 3E+02 0.0065 29.1 8.4 98 860-963 10-119 (125)
298 PF11707 Npa1: Ribosome 60S bi 25.3 5.3E+02 0.012 32.2 11.9 144 54-197 58-237 (330)
299 KOG1789 Endocytosis protein RM 25.0 5.8E+02 0.013 35.9 12.0 83 412-496 1821-1907(2235)
300 KOG2213 Apoptosis inhibitor 5/ 24.8 1.1E+03 0.023 30.0 13.5 129 321-460 25-166 (460)
301 PF12422 Condensin2nSMC: Conde 24.8 9.5E+02 0.021 26.5 12.3 126 1174-1317 18-145 (152)
302 cd00256 VATPase_H VATPase_H, r 24.7 65 0.0014 41.4 3.7 65 719-787 355-424 (429)
303 PF11935 DUF3453: Domain of un 24.7 1.2E+03 0.027 27.6 18.4 83 895-981 114-210 (239)
304 PF11864 DUF3384: Domain of un 24.2 1.7E+03 0.037 29.2 29.9 161 871-1037 274-462 (464)
305 KOG2759 Vacuolar H+-ATPase V1 24.0 1.1E+03 0.023 30.3 13.5 161 1192-1358 244-436 (442)
306 KOG2022 Nuclear transport rece 23.9 2.2E+03 0.048 30.3 37.3 109 603-714 464-579 (982)
307 KOG2842 Interferon-related pro 23.7 1.6E+03 0.035 28.6 15.0 184 294-477 69-276 (427)
308 PF03965 Penicillinase_R: Peni 23.5 86 0.0019 32.7 3.8 45 1639-1707 5-49 (115)
309 KOG1848 Uncharacterized conser 22.9 1.3E+03 0.028 34.1 15.1 155 321-475 924-1133(1610)
310 KOG3961 Uncharacterized conser 22.7 1.8E+02 0.0038 33.6 6.0 91 288-380 117-212 (262)
311 PF04499 SAPS: SIT4 phosphatas 22.6 2.4E+02 0.0052 37.1 8.3 71 958-1041 21-92 (475)
312 TIGR02289 M3_not_pepF oligoend 21.2 1.2E+03 0.026 31.4 14.8 36 1328-1363 141-176 (549)
313 PF12397 U3snoRNP10: U3 small 21.2 4.3E+02 0.0093 27.7 8.5 72 401-476 4-76 (121)
314 KOG0891 DNA-dependent protein 21.1 3.7E+03 0.08 31.9 40.8 124 913-1037 625-759 (2341)
315 COG5537 IRR1 Cohesin [Cell div 20.9 1E+03 0.022 31.8 12.8 142 599-748 273-426 (740)
316 KOG1992 Nuclear export recepto 20.6 2.5E+03 0.053 29.6 42.7 575 614-1375 52-723 (960)
317 PF09324 DUF1981: Domain of un 20.5 3.9E+02 0.0085 26.4 7.4 67 325-391 17-84 (86)
318 PF01417 ENTH: ENTH domain; I 20.4 4.5E+02 0.0097 27.8 8.5 72 400-472 36-119 (125)
319 KOG1993 Nuclear transport rece 20.1 2.5E+03 0.054 29.5 22.4 320 666-1043 420-767 (978)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-51 Score=528.45 Aligned_cols=742 Identities=26% Similarity=0.304 Sum_probs=569.5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 000156 609 QLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 687 (2015)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 687 (2015)
.+.+..|+.|.++...+...+......+.....+++.. ...++|+..|++|..-.+.++..-..
T Consensus 13 ~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~--------------- 77 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRV--------------- 77 (815)
T ss_pred hhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccc---------------
Confidence 37888999999999999988877554443334444433 33356788888777655555432211
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcC
Q 000156 688 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG 767 (2015)
Q Consensus 688 ~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~g 767 (2015)
.+.| ...+++..+....+...+++.++.. ..-|.||..+.++..+..++.+||...+.++.+++.+..+
T Consensus 78 ----~~~~-----~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l- 146 (815)
T KOG1820|consen 78 ----NIRD-----TKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL- 146 (815)
T ss_pred ----cccC-----cchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc-
Confidence 1112 2222333333333344455555554 3679999999999999999999999888888888776654
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhChhHHhhhh-hccHHHHHHHHHHHhcCCCC----CCCC-------------------
Q 000156 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV------------------- 823 (2015)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkp~ll~~Le~ef~k~~~~----~~p~------------------- 823 (2015)
. +.+||.++.++++.||++.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 3 8899999999999999999999887663 33344555555444333210 0000
Q ss_pred CcccccCccccCCCC-CCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 824 PKKTVRASESTSSVS-SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 824 p~R~~r~~~~~~s~~-~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
+.+.++...+. .++ .+..|.+||+||++++++.|...+.|++||.|+||++.+..++.+....+....++.+...++.
T Consensus 224 ~~~~~~~~~~~-~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSG-FTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCC-CCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 00000000000 011 2346889999999999999999999999999999999999999975434555666788888899
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc
Q 000156 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~ 982 (2015)
++.|+|.+|+..|+.+|+.||.+||..|.+|...++|.|+.+++|++..+|+++..|+++|+..+++..+.+.|..++++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~ 382 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKG 382 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHhccCCCC----CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 983 AKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 983 ~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
+ ||+.|.+++.|+.+.+...+.. ..+..+++.++...+|++.+||++|..++.++|+++|++.+.+++..+++.
T Consensus 383 k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 383 K--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred C--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 7 6999999999999999988732 345666777999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcc
Q 000156 1059 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2015)
Q Consensus 1059 ~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2015)
.+..+.+-+.+.-.....+.+++++..+.....+..+. ......+++...|.+.+...+ ++..+. ....+.+
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~- 537 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL- 537 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc-
Confidence 44444444433211111222222221110000000000 000000111111111111100 001111 1111211
Q ss_pred cCCCChHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHH
Q 000156 1134 VKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1209 (2015)
Q Consensus 1134 ~~~~~k~~R~----~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~l 1209 (2015)
.+..+++|. +..+.+|++..+..+..+. |...+.......||+.||+.|.++++.++.....+..++.++.
T Consensus 538 -~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 538 -QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred -ccccccchhhhhhhhccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 344567775 4667889988777655543 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCc
Q 000156 1210 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1289 (2015)
Q Consensus 1210 Dlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~ 1289 (2015)
|++++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++.+
T Consensus 613 ~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~ 692 (815)
T KOG1820|consen 613 DLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSV 692 (815)
T ss_pred hhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHH
Q 000156 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (2015)
Q Consensus 1290 skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~ 1369 (2015)
.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++....++|..+|+++.+++...|.+.|+.+|++
T Consensus 693 ~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (815)
T KOG1820|consen 693 LMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKI 772 (815)
T ss_pred cccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHH
Confidence 99999999999999999999999999999999998765455678999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHhHHHHHHhhhh
Q 000156 1370 VGKLTDAQKSMLDDRFKWKVR 1390 (2015)
Q Consensus 1370 vg~Ls~~~~s~l~er~kr~~~ 1390 (2015)
.+.+.+.++++++.+|++..+
T Consensus 773 ~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 773 SILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999998654
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-41 Score=437.14 Aligned_cols=753 Identities=19% Similarity=0.227 Sum_probs=501.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHHH
Q 000156 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR-YAKEVCDAI 98 (2015)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~-~~~~v~~~L 98 (2015)
+.++.|+.|.++|. +++.|+|...|+.+ .++..|....+..... -....+-..
T Consensus 14 l~~~~w~~~~~~~~-------------------------ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~ 67 (815)
T KOG1820|consen 14 LCSQSWKNRLEAWK-------------------------QLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSF 67 (815)
T ss_pred hhhhhhhhhHHHHH-------------------------HHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccc
Confidence 77788888877765 45667899999999 8888888776553221 122234456
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhh
Q 000156 99 AAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (2015)
Q Consensus 99 ieK~l~-~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll 177 (2015)
.++||. -+..+++...++++.+-..+..+.+++.+...+.-|.||.+++++..+..++.+||...++++.+++.+..++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~ 147 (815)
T KOG1820|consen 68 GLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA 147 (815)
T ss_pred hhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc
Confidence 678887 3788899999988888777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCCccchhhhhHhhhhhccccCCCC
Q 000156 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGP 256 (2015)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~-~~P~R~~rs~~~~~~~~ea~~~~~~~ 256 (2015)
|++||.++..++++||||+|.. ++.+++....+.++.++...+.+.... ....|..-+.+..........+..+.
T Consensus 148 ---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~ 223 (815)
T KOG1820|consen 148 ---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEK 223 (815)
T ss_pred ---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccc
Confidence 9999999999999999999985 556655444445455554444332211 01111111111000000000000000
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHH
Q 000156 257 G--PSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKK 332 (2015)
Q Consensus 257 ~--~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~k--i~~~~y~~l~~~L~k 332 (2015)
. +...........+|.||+.+++||+++++ .+|...+.+++|++|+|||+.+..++..++ +..+.++.+...++.
T Consensus 224 ~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 224 PERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred cccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 0 00001111122278999999999999999 699999999999999999999999886655 445556666777777
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000156 333 LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2015)
Q Consensus 333 ~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L 412 (2015)
+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|+++||+|..+++++..|+++++.. +++.++.+.|..++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEAL 380 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHh
Confidence 7779999999999999999999999999999999999999999999999999999999999984 89999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHH
Q 000156 413 KNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDV 491 (2015)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~ 491 (2015)
++|||++|.+|..|+.+++...+.. .....++.++|.+++..+|++++||.||.++++++++++|++.++.++..+++.
T Consensus 381 k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 381 KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 9999999999999999999988743 233567999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccc-cccccccccCCCCC-CCCCCCCCCCCCCCCCCCCC--
Q 000156 492 RRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF-VRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKD-- 567 (2015)
Q Consensus 492 ~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~s~~~~~~P-~~~~~~~~k~~~~k~~~~~~-- 567 (2015)
-+..+.|.+...-.......+...++ .+....+.. ++...........+ ++.+|....... ++...+.
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~ 532 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAP-------DPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAA 532 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCC-------CccccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchh
Confidence 44444454432100000000000000 000000000 00000000000000 000000000000 0000000
Q ss_pred CCCCCcC-CCCCCCCC-----CCCCC-CCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhc-cccchHH
Q 000156 568 GSGKQET-SKLTEAPE-----DVEPS-EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSV 639 (2015)
Q Consensus 568 ~~~~~~~-s~~~~~~~-----~~~~~-~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~-~~~~~~~ 639 (2015)
..+.... ++...... .+... -...++..+.....++......+.+.+.+.-.++.+.+...-... .......
T Consensus 533 ~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 533 EAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred hccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 0000000 00000000 00000 112244444445566677788999999999999999888655442 2222233
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC----chhHHHHHHHHHHhhhcchh--hhHHHHHHHHHHHhhh
Q 000156 640 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----PKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAV 713 (2015)
Q Consensus 640 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~----~~~~~~~il~~LveKlgD~K--~r~~a~~~L~~l~e~~ 713 (2015)
..++.|+.. ++.|+|..+....++++.......... .........+-+..+.|..+ .+..-..+.....+..
T Consensus 613 ~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 613 DLLLEWLVL--RFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred hhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 456677753 688999999999998887655532110 00000111122222333321 2333333444445555
Q ss_pred ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChh
Q 000156 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (2015)
Q Consensus 714 ~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~ 793 (2015)
+.......+.+.+ ..++-.+|.+++..+..++..-|...+....+....... ..+.+..+|.++..++...|.+.|+.
T Consensus 691 s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (815)
T KOG1820|consen 691 SVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDP 768 (815)
T ss_pred cccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccch
Confidence 5555666666665 678888999999888877776665433222233333333 67778999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHhcCC
Q 000156 794 IKGFLADVKPALLSALDAEYEKNP 817 (2015)
Q Consensus 794 l~~~L~~lkp~ll~~Le~ef~k~~ 817 (2015)
...+.....+.+...++..|.+-.
T Consensus 769 ~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 769 SWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred HHHHHHHhhHHHhhhHHHhcCccc
Confidence 988888888999999999987653
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=4.7e-23 Score=255.87 Aligned_cols=843 Identities=15% Similarity=0.180 Sum_probs=542.1
Q ss_pred ChhhhhcCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000156 15 PWEDRLLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (2015)
Q Consensus 15 pl~erl~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~ 93 (2015)
-|.|++.+++-..|.+|..+|.+.++...- -++..+.+...++.|.+.|+|..||..|+.|+..++.+.+.. +...
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 678999999999999999999999986311 012235566778899999999999999999999999777652 4667
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000156 94 VCDAIAAKCLTGRPKTVEKA-QAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a-~~~ll~~~E~~------~~~~v~~~L~~~~~~KnpK------v~~~~l~~L~~~l~~fG 160 (2015)
++..|+.+.++++.+.|+.+ +.+.+...++. -...|+..+.+.+..-+.+ +..+++.++...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 88888888888899999986 88888888874 1346888888877766666 89999999999999999
Q ss_pred CCCcChh-HHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHH---HhhhC-hHHHHHHHHHHH---Hhc---CC
Q 000156 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI---LFEKM-RDTMKKELEVEL---VNV---SG 229 (2015)
Q Consensus 161 ~~~i~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~---l~~~L-k~~q~keLe~~f---~k~---~~ 229 (2015)
.-..+.. .+++.+..-+......||+.|+-+++.+..+++.+++... +.++| ++.|..++..-+ ..+ .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9776664 4889999999999999999999999999988886543221 22333 334444433322 111 11
Q ss_pred C--------CCCC--ccchhh--hhHhhhh------hc-----cccCC--------------CCCCC-CCCCCCCCCCCC
Q 000156 230 T--------ARPT--RKIRAE--QDKELGQ------EL-----ISEDV--------------GPGPS-EESTADVPPEID 271 (2015)
Q Consensus 230 ~--------~~P~--R~~rs~--~~~~~~~------ea-----~~~~~--------------~~~~~-~~~~~~~~~~iD 271 (2015)
. ..|. -|..+. .+++..+ |+ |.+.. .-+++ ..+.+ +|-|
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~---eDed 322 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE---EDED 322 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc---cchh
Confidence 1 0110 010000 0111100 00 11100 00110 00000 0000
Q ss_pred CCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 000156 272 EYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 350 (2015)
Q Consensus 272 ~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~ 350 (2015)
.....|..| ...++-|+..++-.|+.|++|++.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-
T Consensus 323 ~~~~ed~eD----de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi 398 (1233)
T KOG1824|consen 323 AMFLEDEED----DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYI 398 (1233)
T ss_pred hhhhhcccc----chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000001011 00125677788999999999999999977 5666777778999999999999666667777777766
Q ss_pred HHHHHhhh----------------c-----chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--c--CCChHhHH
Q 000156 351 NLARGLRT----------------H-----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--G--CLNLVDVV 405 (2015)
Q Consensus 351 ~La~~L~~----------------~-----f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~--~~~l~~il 405 (2015)
.+-+..+. . ....+..++..+-+.+++++...+..+..-|..++.. + ..++..++
T Consensus 399 ~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slv 478 (1233)
T KOG1824|consen 399 ALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLV 478 (1233)
T ss_pred HHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccc
Confidence 66643331 1 2345667788888888888888888888889888865 1 24456778
Q ss_pred HHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHH
Q 000156 406 EDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (2015)
Q Consensus 406 ~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~ 483 (2015)
|.|.-.+.+|+ .+.|..++.|+..++..+++..|.++++.+.|.++.++.|+.+.|-..|.-....+.+++...
T Consensus 479 pgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl---- 554 (1233)
T KOG1824|consen 479 PGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL---- 554 (1233)
T ss_pred hhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc----
Confidence 88888898877 689999999999999999999999999999999999999999999555555544444443321
Q ss_pred HHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000156 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPS 563 (2015)
Q Consensus 484 ~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~ 563 (2015)
+ |+.
T Consensus 555 -----~---------------------------------------------------------~~~-------------- 558 (1233)
T KOG1824|consen 555 -----Q---------------------------------------------------------PPS-------------- 558 (1233)
T ss_pred -----C---------------------------------------------------------CCc--------------
Confidence 0 000
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHH
Q 000156 564 AKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILV 643 (2015)
Q Consensus 564 ~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv 643 (2015)
+ .+. ++ ++.. -.....
T Consensus 559 ----~---------~d~---------~~-~v~~-----------------------------------------m~~~tl 574 (1233)
T KOG1824|consen 559 ----S---------FDA---------SP-YVKT-----------------------------------------MYDCTL 574 (1233)
T ss_pred ----c---------CCC---------Ch-hHHH-----------------------------------------HHHHHH
Confidence 0 000 00 0000 011112
Q ss_pred HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh---hChhHHHH
Q 000156 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA---VGPGFIFE 720 (2015)
Q Consensus 644 ~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~---~~~~~Vl~ 720 (2015)
.-|. -+|+...|.+.++.++..++..++++.......+++-+++|+|+.-+|-.|.++|..++.. ++...++.
T Consensus 575 ~rL~----a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~ 650 (1233)
T KOG1824|consen 575 QRLK----ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLT 650 (1233)
T ss_pred HHHh----cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHH
Confidence 2221 2677788999999999999998898888889999999999999999999999999999874 33334444
Q ss_pred HHHHHhhh--CCC-hhHHHHHHHHHHHHHHHhCCCCCC---hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH
Q 000156 721 RLYKIMKD--HKN-PKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794 (2015)
Q Consensus 721 ~L~~~l~~--~Kn-pKv~~~~l~~L~~li~~fG~~~l~---~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l 794 (2015)
.+++.+.+ -|| -+.+.+++..+..+++.+|.. +. +..++..+..+ +..++..|-+.|..++.++.......+
T Consensus 651 ~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~-~~~~~~e~vL~el~~L-isesdlhvt~~a~~~L~tl~~~~ps~l 728 (1233)
T KOG1824|consen 651 EILPELASFLRKNQRALRLATLTALDKLVKNYSDS-IPAELLEAVLVELPPL-ISESDLHVTQLAVAFLTTLAIIQPSSL 728 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 44443311 243 446889999999999998753 33 35577777777 888999999999999998876555444
Q ss_pred HhhhhhccHHHHHHHHH-------------HHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHh
Q 000156 795 KGFLADVKPALLSALDA-------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (2015)
Q Consensus 795 ~~~L~~lkp~ll~~Le~-------------ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~ 861 (2015)
....+.+-+.++..+.. -|+.+..... ..++-..+...++...++.
T Consensus 729 ~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~---------------------~~l~y~~l~s~lt~PV~~~ 787 (1233)
T KOG1824|consen 729 LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKE---------------------PDLDYISLLSLLTAPVYEQ 787 (1233)
T ss_pred HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCC---------------------CCccHHHHHHHHcCCcccc
Confidence 32222222222222221 1221111100 0011001111111111122
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
..|. .-+.|.-.+..++..- ....+.--..+..-|.+-+ ..+|..++..|+-.+|++....+.. +...+..
T Consensus 788 ~~~~---l~kqa~~siA~cvA~L-t~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~ 860 (1233)
T KOG1824|consen 788 VTDG---LHKQAYYSIAKCVAAL-TCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKD 860 (1233)
T ss_pred cccc---hhHHHHHHHHHHHHHH-HHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHH
Confidence 2221 2233444444333210 1112211123333333333 3556677788888888876544322 2345556
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHH-HHHHhccCCCC---CChhhhHH
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW-LSKQLTGLSGF---PDAAHLLK 1015 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~-L~~~l~~~~~~---~~~~~ll~ 1015 (2015)
.++++|+.....|+.||.-||+.+.- -.+..++|.|.+.+.+. | -|++++-+ +.+.+...+.. +.+..+-.
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~v-gnl~~yLpfil~qi~sq---p-k~QyLLLhSlkevi~~~svd~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAV-GNLPKYLPFILEQIESQ---P-KRQYLLLHSLKEVIVSASVDGLKPYVEKIWA 935 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhc-CchHhHHHHHHHHHhcc---h-HhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 88999999999999999999998742 23678999999888754 3 36665554 66666544332 23344444
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~ 1051 (2015)
.+.+.++-....+|....+||+.+.-. .++.+.+.
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~-epesLlpk 970 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLI-EPESLLPK 970 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhC-ChHHHHHH
Confidence 566666666677899999999987544 33444443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.5e-17 Score=213.52 Aligned_cols=838 Identities=17% Similarity=0.186 Sum_probs=516.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (2015)
.+...+-+.+=..|++|-+.+..+...++ +...|...+. -.+..++..|+..+..+....=+..... -..
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34455677777889999999988765433 6667777777 7788899999988888887755555433 345
Q ss_pred HHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 367 llp~LL~kl-kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
+-..||..+ +|..+.||.+....+..++++ ..-..+++++-+..+.++.|++.|+.++..|..+....+. .+..+++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHH
Confidence 666666665 899999999999999999988 1125789999999999999999999999998887665543 4567889
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G-e~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2015)
.+.+.+.+|+.|+...||-+|.++++++..... +...-+.+..+-|.-..-+.+.+...
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-------------------- 218 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-------------------- 218 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc--------------------
Confidence 999999999999999999999999999998885 32222222222221111111111000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000156 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2015)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (2015)
.++
T Consensus 219 -------------------------------------------------------------------d~~---------- 221 (1075)
T KOG2171|consen 219 -------------------------------------------------------------------DDD---------- 221 (1075)
T ss_pred -------------------------------------------------------------------chH----------
Confidence 000
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC-----
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF----- 677 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~----- 677 (2015)
.=..+++.|.+++...... .+....++.+....-+=++-+-.+++.+|+++..+++..+..
T Consensus 222 -------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 222 -------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred -------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0011223333333332211 111222222211111225556678999999999999875432
Q ss_pred --chhHHHHHHHHHHhhhcch--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHH
Q 000156 678 --PKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (2015)
Q Consensus 678 --~~~~~~~il~~LveKlgD~--------------K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~ 738 (2015)
..+.+..++-...+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+||-|.++
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 2333333333333333441 146778999999999999999988887754 568999999999
Q ss_pred HHHHHHHHHHhCCCC-CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh-hhccHHHHHHHHHHHhcC
Q 000156 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (2015)
Q Consensus 739 l~~L~~li~~fG~~~-l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~ 816 (2015)
|..|+.+.+..+-.- -++..+++.+... |.|++|.||.||.+++|.|...+++.+..+. +.++|++...++
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld------ 441 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD------ 441 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc------
Confidence 999999988433110 1467788888885 9999999999999999999988888876544 444444443333
Q ss_pred CCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccc-cCCCCChh
Q 000156 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK-RIQPAGTG 894 (2015)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~-~I~~~~~~ 894 (2015)
|. +-++-..|.-.+-...+++.+ .|.|+ +.
T Consensus 442 -----------------------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld 473 (1075)
T KOG2171|consen 442 -----------------------------------------------STQNVRVQAHAAAALVNFSEECDKSILEPY-LD 473 (1075)
T ss_pred -----------------------------------------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HH
Confidence 32 234444555556655655533 45555 58
Q ss_pred hHHH-HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCc
Q 000156 895 ELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 895 eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k----~~Vr~aa~~aL~~i~~~~gl 969 (2015)
.|+. .|...+....+.|+.+++.+|+.+|.+.+..|.+|.+.++|.+.+.|...+ ..+|...++|++.+...+|-
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 8888 444455667888999999999999999999999999999999999887544 46899999999999999997
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHH
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~ 1049 (2015)
+++.|.-.+.+ ..+.. +. . . ..|-+...|.........+.+++|++ +.
T Consensus 554 e~F~~~a~eli--------------qll~~-~~--~-------------~-~~~~dd~~~sy~~~~warmc~ilg~~-F~ 601 (1075)
T KOG2171|consen 554 EKFLPLAEELI--------------QLLLE-LQ--G-------------S-DQDDDDPLRSYMIAFWARMCRILGDD-FA 601 (1075)
T ss_pred hhhhHhHHHHH--------------HHHHh-hc--c-------------c-chhhccccHHHHHHHHHHHHHHhchh-hH
Confidence 77776533333 22221 11 0 0 12223335777777888888999987 45
Q ss_pred HHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhh
Q 000156 1050 KNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129 (2015)
Q Consensus 1050 ~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (2015)
+++...=|.-++ .++... --...... ......... . -. .. ....+
T Consensus 602 p~L~~Vmppl~~-------ta~~~p---~~~~~d~~--d~e~~~~~~-~----~e---------------~~---~~~~~ 646 (1075)
T KOG2171|consen 602 PFLPVVMPPLLK-------TARLDP---DVALSDEE--DEEEEQDLD-G----WE---------------VV---ELGDK 646 (1075)
T ss_pred hHHHHHhHHHHH-------hhccCC---cccCcCch--hhhhccccc-c----ch---------------hh---ccCCc
Confidence 665333222221 111100 00000000 000000000 0 00 00 00000
Q ss_pred hhcccCCC---ChHHHhh-h----hhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhc---
Q 000156 1130 ALLNVKDS---NKEDRER-M----VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL--- 1198 (2015)
Q Consensus 1130 ~~~~~~~~---~k~~R~~-~----~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l--- 1198 (2015)
-.+-+.++ .|+.=.. + ...|-.|. .++|+-...| +....|.-.-..|.+|++.|-..+
T Consensus 647 e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 647 ENIGIRTSVLDEKETACEALGEYAKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred eeeeeeehhHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 00001011 1111100 0 01222232 2222211111 222333222234556666554433
Q ss_pred ----CcChhhHHHHHHHHHHHHHHhh-cCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhh-------c
Q 000156 1199 ----PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS-------G 1266 (2015)
Q Consensus 1199 ----~~~~~~~i~~lDlllk~~~lr~-~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~-------G 1266 (2015)
...+..+....+-+++-+..-+ .+.-+.|+..+|+-+...+..+.... |.+.+...++-.+..++ +
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~ 793 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQ 793 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344545555555555554443 45789999999999999888887653 77777777776664443 2
Q ss_pred C---------ChHHHHHHHH----HHHHHHhhcc-------Cc------cccHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 000156 1267 H---------NIEKVREKMR----ELTKQIVNFY-------SA------TKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320 (2015)
Q Consensus 1267 d---------~k~~vr~~v~----~il~~i~~vy-------~~------skvf~~l~~gl~sKN~r~R~ecl~~l~~li~ 1320 (2015)
| --+..++.+. .++..++.+. -. ..++|++..-+++++.--|.=.+..++.+|+
T Consensus 794 ~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 794 DRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIE 873 (1075)
T ss_pred hhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2 1111222222 1333333322 11 2578888777777765558888888999999
Q ss_pred hhCCCcccc-cchHHHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHh
Q 000156 1321 HHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSM 1380 (2015)
Q Consensus 1321 ~~g~~~~~~-~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~~~~s~ 1380 (2015)
..|-..... ..-++.+...+.|.+++||++|--.++.+-.+.|+.--..+..+.+..-.+
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 988753221 223599999999999999999999999998988887333344433433333
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-16 Score=203.45 Aligned_cols=877 Identities=16% Similarity=0.172 Sum_probs=471.7
Q ss_pred HHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--
Q 000156 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE-- 124 (2015)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~--~k~~~k~~a~~~ll~~~E~~-- 124 (2015)
.|.+....+-..+.+.|+.-+|.||-.|..+....+.....+..++. .|..+|++ +.+ +|-.|...+..|++.-
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777777888999999999999999999988887665555555554 56778888 455 9988888777777652
Q ss_pred hhhh--HHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhHHHhhhhhhhcCC--ChhHHHHHHH
Q 000156 125 AVDV--FLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (2015)
Q Consensus 125 ~~~~--v~~~L~~--------~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (2015)
+... -+..+++ .....+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 1211 1222233 23455666678888888888887655 332 355666667777765 7889999999
Q ss_pred HHHHHHHHhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCC-CCCCCCCCCC
Q 000156 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG-PSEESTADVP 267 (2015)
Q Consensus 191 l~~ely~~lG~~~l~~--~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~-~~~~~~~~~~ 267 (2015)
+++.+.++- +...|. .+...|-++.++.. ++ ...+. -..+++.+++
T Consensus 272 ~ivs~~e~A-p~~~k~~~~~~~~lv~~~l~~m-----------te-------------------~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 272 FLVSLSEYA-PAMCKKLALLGHTLVPVLLAMM-----------TE-------------------EEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHhh-HHHhhhchhhhccHHHHHHHhc-----------CC-------------------cccchhhccccccccc
Confidence 999999882 111110 00011111111110 00 00000 0000001111
Q ss_pred CCCCCCCCC-----------CcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc
Q 000156 268 PEIDEYELV-----------DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (2015)
Q Consensus 268 ~~iD~~dl~-----------~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~ 335 (2015)
+.-+||.+. .+..|+..+= +.+...+.+.+|++|++||..|..+.. ..+...+.+..|++.+...+.
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 112233221 2222332221 345556799999999999999999884 555555678899999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhHHHH
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVED 407 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp-~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~------l~~il~~ 407 (2015)
|.++.|+..||++||.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..++.. |.. ++.+++.
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEK 478 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977666666 555555443 557888899999988876 422 4445552
Q ss_pred -HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCchHHH
Q 000156 408 -VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPLE 482 (2015)
Q Consensus 408 -l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~----~~VR~aA~~al~~l~~~~Ge~~~~ 482 (2015)
+...+++.++.+|+.++..|+.+..... ..|.+|.+.++|.|.++|...+ .++|-...+|++.+...+|.+.|.
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~ 557 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL 557 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 2334457889999999999998766544 4578999999999999995444 678888889999999999987787
Q ss_pred HHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000156 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 562 (2015)
Q Consensus 483 ~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~ 562 (2015)
++...|-..-. +.. ++......|..+ . .-+.-+ ..-+-...-+.+--|.. -|+-.+....++
T Consensus 558 ~~a~eliqll~----~~~---~~~~~~dd~~~s-------y--~~~~wa-rmc~ilg~~F~p~L~~V-mppl~~ta~~~p 619 (1075)
T KOG2171|consen 558 PLAEELIQLLL----ELQ---GSDQDDDDPLRS-------Y--MIAFWA-RMCRILGDDFAPFLPVV-MPPLLKTARLDP 619 (1075)
T ss_pred HhHHHHHHHHH----hhc---ccchhhccccHH-------H--HHHHHH-HHHHHhchhhHhHHHHH-hHHHHHhhccCC
Confidence 77765532211 110 111100000000 0 000000 00000000000000000 000000000000
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH-------hhhccCCHHHHHHHHHHHHHHHHhccc-
Q 000156 563 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV-------GQLKSAVWKERLEAISSLRQQVEAVQN- 634 (2015)
Q Consensus 563 ~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~-------~~L~s~~Wk~Rl~a~e~L~~~v~~~~~- 634 (2015)
...++.++.++...+..+-+.+ -++..+-.-++..|.+.|..+-.....
T Consensus 620 -----------------------~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 620 -----------------------DVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -----------------------cccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 0011111111111111111110 112223333444444444444332111
Q ss_pred cchHHHHHHHHHh--cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh
Q 000156 635 LDQSVEILVRLVC--MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (2015)
Q Consensus 635 ~~~~~~~Lv~~L~--~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~ 712 (2015)
-.++.+-++..+. .+-.|-| -|+..+++ ++|.++...--.--+..+ .+..+
T Consensus 677 F~pYve~v~~l~v~~l~f~fhd---gVR~aa~~-------------------~~p~ll~~~~~A~~~~p~--~l~~l--- 729 (1075)
T KOG2171|consen 677 FAPYVEQVVELMVPLLKFYFHD---GVRKAAAE-------------------SMPQLLTCALKACQGGPE--YLKQL--- 729 (1075)
T ss_pred hhhHHHHHHHHHHHHHHhhhhh---HHHHHHHH-------------------HHHHHHHHHHHHhccChH--HHHHH---
Confidence 0111111111000 0000111 12333333 333332110000000000 00000
Q ss_pred hChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCh
Q 000156 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (2015)
Q Consensus 713 ~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~ 792 (2015)
-.++++.++..+..-..+.+..+.++.+.+.++.+|...++...+-..+... + . .+-.-+..++.
T Consensus 730 --~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~--------~----~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 730 --WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGL-L--------A----QLLQHFKRMQD 794 (1075)
T ss_pred --HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H--------H----HHHHHHHHHHh
Confidence 1234444555554456777888999999999999997655433222222111 0 0 00000000110
Q ss_pred hH-HhhhhhccHH----H---HHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC
Q 000156 793 DI-KGFLADVKPA----L---LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (2015)
Q Consensus 793 ~l-~~~L~~lkp~----l---l~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d 864 (2015)
.. ..+.++.... + =+.|.+.+.++.. +.++. .++ +.. .....+.|.+...+.+
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~-------~l~k~-------~k~--~f~---p~f~~~~p~iv~~l~~ 855 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA-------ALAKA-------LKG--SFL---PFFENFLPLIVKLLKS 855 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH-------HHHHH-------ccc--ccc---HHHHHHHHHHHHHHhc
Confidence 00 0000000000 0 0001111111100 00000 000 000 0122244555666666
Q ss_pred CC-hHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000156 865 PD-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2015)
Q Consensus 865 ~~-Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~ 943 (2015)
++ |. |.=|+-.+.+++..+.+...+. +..+...+...+.|..+-|++.|..-+|.+|.--|..+.+.+...+|.++.
T Consensus 856 ~~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~ 933 (1075)
T KOG2171|consen 856 KKTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQ 933 (1075)
T ss_pred CCcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 54 77 9999999999998664444443 577888999999999999999999999999999999999999999999998
Q ss_pred HhCCCcH---H---HHHHHHHHHHHHHHhc----CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---C---
Q 000156 944 CLGDNKK---H---MRECTLTVLDAWLAAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F--- 1007 (2015)
Q Consensus 944 ~L~D~k~---~---Vr~aa~~aL~~i~~~~----gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~--- 1007 (2015)
.+..... . ..+-|..|+..++.+. .+++++|.+...|-... .-+.-..+..+|...++.... .
T Consensus 934 ~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen 934 VLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred HHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence 8876443 2 3444444444444443 36777777776664211 122335577778877765443 1
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000156 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (2015)
..+..++..+...+.+.+-.-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1013 ~~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1013 QNIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred ccchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 123333333444555554444444433333322222 445677788899999888887764
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.85 E-value=1.4e-20 Score=220.09 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=148.3
Q ss_pred cCcchhhhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcccCHHHHHHHHHHHHHHHHHhh
Q 000156 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (2015)
Q Consensus 284 kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~--ki~~~~y~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 357 (2015)
.+. +.|.+...+.+|++|.+||+.|+.++.+. ......|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 344 46777788999999999999999988543 22222333323 366677889999999999999999999999
Q ss_pred hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000156 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (2015)
Q Consensus 358 ~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~i-l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~- 435 (2015)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..++++|||.+|..++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999987 4314566 7888889999999999999999999999998
Q ss_pred -hhHHHH--hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 436 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 436 -~~~l~~--~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
...+.. .++.+.+.+.++++|++++||++|+++|+.+++++|++ ...++..||+..||.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999998 5788899999888765
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.73 E-value=1.2e-10 Score=146.90 Aligned_cols=518 Identities=16% Similarity=0.212 Sum_probs=314.0
Q ss_pred HHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-c
Q 000156 325 EVCRTLKKLITDVNIA------VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-G 397 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~------V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~ 397 (2015)
.+++.+...+.+.++. +...+|..++.+-..+|.-.-++...++..++-.+......||..+..||..+..+ +
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444433 66667777777777777666667788888999999999999999999999999877 1
Q ss_pred CCChHhHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCCHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L---~Ds~~~VR~aA~~al~~l 472 (2015)
..-+..+++++..+|.+ ++..+|.. .+.|+.+....+ ..+..+++.++|.+...+ +..+.+.|+...++++.|
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 23356788888888874 34455532 233333333222 345677888999999988 888999999999999999
Q ss_pred HHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCC
Q 000156 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (2015)
Q Consensus 473 ~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~ 552 (2015)
....+.+ +.|+.+.+-..-.++| .-- | +-.. ..+ +
T Consensus 285 l~rcp~e-i~p~~pei~~l~l~yi----sYD----P-Ny~y-----------d~~--e---------------------- 319 (1233)
T KOG1824|consen 285 LRRCPKE-ILPHVPEIINLCLSYI----SYD----P-NYNY-----------DTE--E---------------------- 319 (1233)
T ss_pred HHhChhh-hcccchHHHHHHHHHh----ccC----C-CCCC-----------CCc--c----------------------
Confidence 9888754 7788777654333333 110 0 0000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC-CCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHh
Q 000156 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV-EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA 631 (2015)
Q Consensus 553 ~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~-~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~ 631 (2015)
+.. + ...+..+|. ...++|+|| +-.||.|.+|..-+...+.+
T Consensus 320 --------------Ded----~-~~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 320 --------------DED----A-MFLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred --------------chh----h-hhhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHhc
Confidence 000 0 000000000 011222221 22466666555555544422
Q ss_pred ccc--------c-----------c-----hHHHHHHHHHhcCCC------------------------------------
Q 000156 632 VQN--------L-----------D-----QSVEILVRLVCMLPG------------------------------------ 651 (2015)
Q Consensus 632 ~~~--------~-----------~-----~~~~~Lv~~L~~~pg------------------------------------ 651 (2015)
-.+ . + ....+.+..|...+.
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 100 0 0 001222233322222
Q ss_pred -CcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchh----hhHHHHHHHHHHHhhhChhHH---HHHHH
Q 000156 652 -WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK----TRAHAMKCLTTFSEAVGPGFI---FERLY 723 (2015)
Q Consensus 652 -~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K----~r~~a~~~L~~l~e~~~~~~V---l~~L~ 723 (2015)
+++...+-.+..|..|..++..+++...++...++|+++-.+.|.. .+..+.-.|....-..+|+.. ++.+.
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls 522 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS 522 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence 2232333445667777777776776666777888999999988832 233333333333333343321 12222
Q ss_pred H---HhhhCCChhHHHHHHHHHHHHHHHhCC----CCCC----hhhHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHhC
Q 000156 724 K---IMKDHKNPKVLSEGILWMVSAVEDFGV----SHLK----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVG 791 (2015)
Q Consensus 724 ~---~l~~~KnpKv~~~~l~~L~~li~~fG~----~~l~----~k~li~~l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G 791 (2015)
+ ......=+|+-.|+|....++++-.-. ..++ ++.++....+. -..+.+..||..|+.|++.+-..+|
T Consensus 523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 2 223456689999999998888874321 1133 34444433222 1467789999999999999999998
Q ss_pred hhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHH
Q 000156 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRL 871 (2015)
Q Consensus 792 ~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~ 871 (2015)
+.+..++...-|.+++.+..| -.|.
T Consensus 603 D~l~~eL~~~L~il~eRl~nE-------------------------------------------------------iTRl 627 (1233)
T KOG1824|consen 603 DFLGNELPRTLPILLERLGNE-------------------------------------------------------ITRL 627 (1233)
T ss_pred hhhhhhhHHHHHHHHHHHhch-------------------------------------------------------hHHH
Confidence 655555444333333333222 1355
Q ss_pred HHHHHHHHHHHhccccCC--CCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCC
Q 000156 872 ESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDN 948 (2015)
Q Consensus 872 eale~L~~ll~~a~~~I~--~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~ 948 (2015)
.|+.++.-|.. +.-.|. +. +++++..|..-+.-.+..++..++.++..|.+..+..+..+ ++.++--+...+.++
T Consensus 628 ~AvkAlt~Ia~-S~l~i~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises 705 (1233)
T KOG1824|consen 628 TAVKALTLIAM-SPLDIDLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES 705 (1233)
T ss_pred HHHHHHHHHHh-ccceeehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH
Confidence 56666666654 222332 23 46777777766666677788999999999999999888766 455777888888999
Q ss_pred cHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000156 949 KKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 983 (2015)
Q Consensus 949 k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~ 983 (2015)
...|-+-|..+|.+++..-+ -..+++.+...++++
T Consensus 706 dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 706 DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 99999999999999887643 356788888888755
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.73 E-value=6e-17 Score=189.60 Aligned_cols=208 Identities=21% Similarity=0.324 Sum_probs=143.5
Q ss_pred ccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhCh
Q 000156 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2015)
Q Consensus 853 ~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~----~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2015)
.+...|.+...+.+|+.|.+|++.|+.++.+....-.+.. +.+++..+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3555666667889999999999999999985311111111 223345667788999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000156 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2015)
Q Consensus 929 ~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l~~l-l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2015)
.|++|+..++|.++++++|+++.|+++|..||..++.+++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 67777788777 799999999999999999882
Q ss_pred -CC------ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000156 1007 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (2015)
Q Consensus 1007 -~~------~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (2015)
.. .+..+++.+..++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124566779999999999999999999999999999986 557799999888765
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.5e-14 Score=173.33 Aligned_cols=515 Identities=17% Similarity=0.177 Sum_probs=336.4
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcC-CChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHH
Q 000156 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (2015)
Q Consensus 138 ~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q 216 (2015)
.+..+.+...-+.....++.++|-+.+ ..+++..-..++| .+.++|+....+...+-+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 556667777778888888888888643 2333333333332 27889999888888887777431 22222
Q ss_pred HHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc
Q 000156 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (2015)
Q Consensus 217 ~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s 296 (2015)
+-++..++.. .+|+...+..-..=.. +-...-.. .+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~---~tps~~~q~~~~~~l~---~~~~~~~~------------------~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEEL---DTPSKSVQRAVSTCLP---PLVVLSKG------------------LSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhc---CCCcHHHHHHHHHHhh---hHHHHhhc------------------cCHHHHH-----HHHHHHhcc
Confidence 2223333333 2343211110000000 00000000 0011111 345667789
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHhhhcchhhhHhHHHHHHHHh
Q 000156 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~kl 375 (2015)
.+..+|+.+...+..+.++.-+..-.-..++..|.+.+.|.+....++ +..+.......|++.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999988766665444578899999999999888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000156 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2015)
Q Consensus 376 kdkk~~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L 454 (2015)
+|+-+.||+++..|.++++.. ...++..+++.++.++....|+.|..+++.+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999985 33557888999999988889999999999998 6777777788889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccc
Q 000156 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (2015)
Q Consensus 455 ~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 534 (2015)
+|++++||++|.+|+-.+..++.+..+.++++.|- +++.. |+... ++ .+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~---------~e-----~~ 353 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT---------PE-----CL 353 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch---------HH-----HH
Confidence 99999999999999999999999988888877653 33211 00000 00 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCC
Q 000156 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (2015)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~ 614 (2015)
+ +++.+ .. .+.+.+ ...+++.+-+..++..++
T Consensus 354 -~----~L~~t------------------------------tF---V~~V~~----------psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 354 -D----SLGAT------------------------------TF---VAEVDA----------PSLALMVPILKRGLAERS 385 (569)
T ss_pred -H----hhcce------------------------------ee---eeeecc----------hhHHHHHHHHHHHHhhcc
Confidence 0 00000 00 001111 112334455555555444
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc
Q 000156 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2015)
Q Consensus 615 Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2015)
.-.+..++..+.++. .+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~IidNm~---------------------------------------~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMC---------------------------------------KLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHHHHH---------------------------------------HhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 444333332222111 11110 11111234455566555555
Q ss_pred c--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH-HHhcCC
Q 000156 695 D--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF-CKDTGL 768 (2015)
Q Consensus 695 D--~K~r~~a~~~L~~l~e~~~~---~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~-l~~~gL 768 (2015)
| +-+|..+..+|..+.|..+. +.+...+...+...|.-+-+.+++..+..++...|.... ..++.- +.....
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 5 45788888888777776543 345666666666677888899999999999988877532 222222 222213
Q ss_pred CCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc
Q 000156 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2015)
Q Consensus 769 ~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2015)
...++.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+.
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~ 550 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEK 550 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCc
Confidence 34456699999999988888888889999999888888888765444
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.7e-12 Score=152.31 Aligned_cols=692 Identities=15% Similarity=0.172 Sum_probs=421.9
Q ss_pred ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH----Hhhhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR----GLRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 322 ~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~----~L~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
+..++++.|...+.....+....|+.++..+++ .+..++ .+....++|.+|+-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 456777777777763333356667666666665 344433 356889999999999999999999999999987643
Q ss_pred cC----CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 397 GC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 397 ~~----~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
.+ .+++.+++.+..--.+.+|.||...+..+..+++..+ ..+.+++..++..+.....|.+.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 11 3467777877776678999999999999998887654 346788999999999999999999988888877777
Q ss_pred HHH-hCchHHHHHHHhccHHHHHHHHH-----HHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000156 473 AKS-VGMRPLERSIEKLDDVRRNKLSE-----MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2015)
Q Consensus 473 ~~~-~Ge~~~~~~l~~Ld~~~~kkI~e-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2015)
... +....+.+|+++|-|.....+.- .+-+. .. +...++... ...+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~---~e---------------------eD~~vpDre----eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN---NE---------------------EDESVPDRE----EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC---cc---------------------ccccCCchh----hhcc
Confidence 654 34566889998887765443210 00000 00 000000000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC---CCCCHHHHHH----HhhccCc--------HHHHhhhc
Q 000156 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP---SEMSLEEIES----RLGSLIP--------ADTVGQLK 611 (2015)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~---~~~s~ee~e~----~~~~ll~--------~~l~~~L~ 611 (2015)
|--. |+...+.+.-+ ....-+..++-.. ..+...-+.+ .++.+++ |-+.+.|.
T Consensus 336 PRfh----------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFH----------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhh----------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 1100 01101000000 0000000000000 1111122222 2233343 45567889
Q ss_pred cCCHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHH
Q 000156 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGI 689 (2015)
Q Consensus 612 s~~Wk~Rl~a~e~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~-~~~~~~~~~il~~L 689 (2015)
+.+|+.|.+|+-.|+.+.++ ++...+....|+.+|.. -+.|+-.-|+.-.+=.|..+..-.. .-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999887 55544444445555532 2455555555433333332222111 11335667788899
Q ss_pred Hhhhcch--hhhHHHHHHHHHHHhhhChhH------HHHHHHHHh--hhCCChhHHHHHHHHHHHHHHHhCCC--CCC--
Q 000156 690 SERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVS--HLK-- 755 (2015)
Q Consensus 690 veKlgD~--K~r~~a~~~L~~l~e~~~~~~------Vl~~L~~~l--~~~KnpKv~~~~l~~L~~li~~fG~~--~l~-- 755 (2015)
+.++-|. |++++|..++..+-|..+.+. ++.+++... -++||-.+...++..|+.-+...=.+ .++
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 589999999998888766543 444444432 24789999999888888777432111 111
Q ss_pred hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH---HhcCCCCCC-CCCccc-ccC
Q 000156 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE---YEKNPFEGT-VVPKKT-VRA 830 (2015)
Q Consensus 756 ~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e---f~k~~~~~~-p~p~R~-~r~ 830 (2015)
+.++++.-. . +.++++++-- -.+|+..+...+|..+.+|-..+-..-...|++- ..++....+ ..|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 233444333 3 7888887643 4577788888888887777654443333334322 223322111 112111 000
Q ss_pred cccc-----CCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc
Q 000156 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (2015)
Q Consensus 831 ~~~~-----~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~ 905 (2015)
+-+. ++-+++.++++.+.+ |..-++.-+.|.--.+|..+.-.++.+...+..++.|+. .+++..|..-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000111223333333 344566778899999999999999999987777888885 888888888888
Q ss_pred cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000156 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (2015)
Q Consensus 906 DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~ 977 (2015)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++..++-++ ..+-+-..-+++.+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 88899999999999999999999999999999988888776443 3344444445555554443 222222222
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhh--HHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000156 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL--LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2015)
Q Consensus 978 ~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~l--l~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2015)
..|.+=+. -+.|..++..+-..+.-.+.. ...+. +--.+....+...++|....+.|..+...+|...-..++.++
T Consensus 794 ~sl~~i~D-neEK~sAFrG~c~mi~vNp~~-vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 794 TSLRNIDD-NEEKESAFRGLCNMINVNPSG-VVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHhccccc-chhHHHHHHHHHHheeeCchh-hhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 33332111 133555555554444322221 11111 111444556777999999999999999999999888899999
Q ss_pred ChHHHHHHHHH
Q 000156 1056 QGPALALILER 1066 (2015)
Q Consensus 1056 ~~~~~~~i~~~ 1066 (2015)
+|..+..+...
T Consensus 872 ~P~~~erl~a~ 882 (885)
T KOG2023|consen 872 PPPLKERLQAF 882 (885)
T ss_pred ChhHHHHHHHH
Confidence 99887766653
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.2e-12 Score=152.50 Aligned_cols=669 Identities=18% Similarity=0.206 Sum_probs=384.2
Q ss_pred HHHHHHHHHHHHHHHHhchhh----h-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh------hhhhHHHHHHH
Q 000156 67 PVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE------AVDVFLDVMEK 135 (2015)
Q Consensus 67 ~vqe~~leal~~~l~~~~~~~----~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~------~~~~v~~~L~~ 135 (2015)
..+|.|+.||....+-...-+ . +...-++|..++-.-...|++|..|+.|+-.|+=+. ..+..++.|..
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa 222 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA 222 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence 678889888887766543311 1 223445555555422368999999999999988542 13556666665
Q ss_pred HhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHH-hCCchhhHHHhhhCh
Q 000156 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTILFEKMR 213 (2015)
Q Consensus 136 ~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~l~~~l~~~Lk 213 (2015)
.-+.-+|.|+...+..+.-+++-.--+.+| +..|+.++...-.+.|.+|-=||..+...+... +-++.+.+++ ++|-
T Consensus 223 lanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l-~kli 301 (885)
T KOG2023|consen 223 LANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL-DKLI 301 (885)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHH
Confidence 557888999888888887777644445554 678999999999999999999998886655422 1223444554 5555
Q ss_pred HHHHHHH-----HH-HHHhcC-CCCCC-------CccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000156 214 DTMKKEL-----EV-ELVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2015)
Q Consensus 214 ~~q~keL-----e~-~f~k~~-~~~~P-------~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~v 279 (2015)
|+.+.-. +- ..++.. ....| .||-++... |.+.. .++++++.|
T Consensus 302 PvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~---~~~eDdddD-------- 358 (885)
T KOG2023|consen 302 PVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGED---ADDEDDDDD-------- 358 (885)
T ss_pred HHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCccc---ccccccccc--------
Confidence 6544321 00 111111 11222 133222211 11110 011111111
Q ss_pred cccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc
Q 000156 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (2015)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~ 359 (2015)
++-+.....+|.-|+.....|.-+++. +...-+.-+++.|+..+..-+=.|...++-++|.+|+|.-..
T Consensus 359 ---------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g 427 (885)
T KOG2023|consen 359 ---------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG 427 (885)
T ss_pred ---------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh
Confidence 111223457899999776666555431 011224567888888888777788899999999999999999
Q ss_pred chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
|-+|...++|.++..+.|||+-||.-. |+++.+.-..+. +...
T Consensus 428 ~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~----------------------~~~~---- 470 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV----------------------QDSR---- 470 (885)
T ss_pred cccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh----------------------cCCh----
Confidence 999999999999999999999888533 666555433321 1111
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCC
Q 000156 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~ 519 (2015)
.++++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+-..-......|-.+
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~K----------------- 532 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKK----------------- 532 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhc-----------------
Confidence 2344667778888999999999999999999999999986 6678776544333333322111
Q ss_pred CCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhh
Q 000156 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLG 599 (2015)
Q Consensus 520 ~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~ 599 (2015)
T Consensus 533 -------------------------------------------------------------------------------- 532 (885)
T KOG2023|consen 533 -------------------------------------------------------------------------------- 532 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHHHHHHcC-CC
Q 000156 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATAT-KF 677 (2015)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~~DsN~qV~~~~Le~l~~l~~~~~-~~ 677 (2015)
|-..=.+|+..|.+.+...=....+.++|+.-| .+--.++|+.--++ -.||++..++..++ .|
T Consensus 533 --------------NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 533 --------------NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGF 597 (885)
T ss_pred --------------ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccc
Confidence 001111122222222211000011233333222 11112344332222 24566666666543 22
Q ss_pred c---hhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-
Q 000156 678 P---KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH- 753 (2015)
Q Consensus 678 ~---~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2015)
. ...+..|+ .|+.| ++..++....+.. ..+..-....-+|..++-+++..|...
T Consensus 598 ~P~~~~Vy~Rc~-~il~~------------t~q~~~~~~~~~~---------~~~pdkdfiI~sLDL~SGLaegLg~~ie 655 (885)
T KOG2023|consen 598 LPYAQPVYQRCF-RILQK------------TLQLLAKVQQDPT---------VEAPDKDFIIVSLDLLSGLAEGLGSHIE 655 (885)
T ss_pred cccCHHHHHHHH-HHHHH------------HHHHHHhccCCcc---------ccCCCcceEEEeHHHHhHHHHHhhhchH
Confidence 2 22222221 12211 2222222211110 011111223345666777777766532
Q ss_pred --CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCc
Q 000156 754 --LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (2015)
Q Consensus 754 --l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~ 831 (2015)
+.-..+.+.+..+ +.|.-|+||++|..++|.|-++.-+.+.++++++-|.+-..
T Consensus 656 ~Lva~snl~~lll~C-~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~N----------------------- 711 (885)
T KOG2023|consen 656 PLVAQSNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGAN----------------------- 711 (885)
T ss_pred HHhhhccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhc-----------------------
Confidence 1123477777775 99999999999999999998877666666666555543311
Q ss_pred cccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchH
Q 000156 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNK 909 (2015)
Q Consensus 832 ~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~ 909 (2015)
+.++.+. +-..|.-.+++|........++.. +.++.-|...+ ...++
T Consensus 712 ----------------------l~~~~is--------v~nNA~WAiGeia~k~g~~~~~~v-~~vl~~L~~iin~~~~~~ 760 (885)
T KOG2023|consen 712 ----------------------LNPENIS--------VCNNAIWAIGEIALKMGLKMKQYV-SPVLEDLITIINRQNTPK 760 (885)
T ss_pred ----------------------CChhhch--------HHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHHhcccCchH
Confidence 1111111 122344466766654333333332 45555555555 34567
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh---cC
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT---DA 983 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~---~~ 983 (2015)
.+...+..+||.|+-..+..+.+|...++.+....+..=+ ..-.++|...+-.++...+ +-.-+..+..+.. ++
T Consensus 761 tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np 840 (885)
T KOG2023|consen 761 TLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNP 840 (885)
T ss_pred HHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccCh
Confidence 7888889999999998888899999999988766554321 1245677777766665543 2222334444443 22
Q ss_pred CCChhHHHHHHHHHHH
Q 000156 984 KLGAEGRKDLFDWLSK 999 (2015)
Q Consensus 984 k~~p~~R~~~l~~L~~ 999 (2015)
....|.+..+.|..
T Consensus 841 --~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 841 --EDDLRDEFYKILQG 854 (885)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23456665555543
No 12
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.56 E-value=6.5e-13 Score=158.13 Aligned_cols=387 Identities=17% Similarity=0.183 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhhChhHHHHHHHHHhhh---CCChhHHHHHHHHHHHHHHHhCCCC-
Q 000156 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSH- 753 (2015)
Q Consensus 681 ~~~~il~~LveKlgD~---K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~---~KnpKv~~~~l~~L~~li~~fG~~~- 753 (2015)
|...-+..++.|-|-. .++......+..+..++.+.+... +++.+.+ .-.||-|...+++++...+++...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3333444455544431 234555556677778888777666 6666533 3479999999999999998875432
Q ss_pred -CChhhHHHHHHhcCCC---CC--chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCC-CCCc-
Q 000156 754 -LKLKDLIDFCKDTGLQ---SS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK- 825 (2015)
Q Consensus 754 -l~~k~li~~l~~~gL~---~s--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~-p~p~- 825 (2015)
.+.+..-.-..++ +. +. ...+-......++.++...-.+|...++.+.|.......+..+.+..+.. |.|.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 2333222222222 22 11 12344555666777776677789888899999888888777766543221 1111
Q ss_pred -c--cc-cCcccc-----C--------CC---------CCC--------------CCCCCCCccc-ccccchHHHHhcCC
Q 000156 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (2015)
Q Consensus 826 -R--~~-r~~~~~-----~--------s~---------~~~--------------~~d~lprvdI-s~~L~~~ll~~l~d 864 (2015)
+ +. +.+... + +. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222111 11233466777766
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000156 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (2015)
Q Consensus 865 ~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll 942 (2015)
. .-..|++|+.+|..++.+....+|...|++|+..+...|.| .+......|+++|+.++++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 6 78899999999999998766778888899999999999999 788999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC---CChhhhHHHHH
Q 000156 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1018 (2015)
Q Consensus 943 ~~L~D~k~-~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1018 (2015)
++-+|+.. .+|.|+..|+..+..+.++..+.. +...+.+.. -..-.-+++++.+.++.+... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999765 677777777888878877665543 444444331 122356788999999887652 23456677799
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000156 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (2015)
Q Consensus 1019 ~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~ 1072 (2015)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998754
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=1.9e-07 Score=132.20 Aligned_cols=773 Identities=14% Similarity=0.128 Sum_probs=456.3
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhh-
Q 000156 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAV- 126 (2015)
Q Consensus 52 ~~~~~~~k~v~D-sN~~vqe~~leal~~~l~~~~~~~~~~~---~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~- 126 (2015)
....++.++-.- +++..++.++..|..|.+....+ .+.. ...+|.||.-.-++...+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 344566666544 46899999999999998886442 2222 34788888763346788888888777777655331
Q ss_pred -----hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhHHHhhhhhhhcCCC---hhHHHHHHHHHH
Q 000156 127 -----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTL 193 (2015)
Q Consensus 127 -----~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~f-----G~~~i~~k~il~~l~~ll~~~d---~~VR~~a~~l~~ 193 (2015)
...++.|+..+.+-++..+..|..+|..+.... +.+++--.-.+|.|..++.+.+ +.|++.+...+.
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 345566667777778888888888888765421 2121111335777777777764 233333322222
Q ss_pred HHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCC
Q 000156 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 273 (2015)
Q Consensus 194 ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~ 273 (2015)
.|..+-+. ....+. + .| .
T Consensus 173 nLs~~~en--~~~~II------------------------------------------e-aG-------------a---- 190 (2102)
T PLN03200 173 NLCGSTDG--FWSATL------------------------------------------E-AG-------------G---- 190 (2102)
T ss_pred HHhcCccc--hHHHHH------------------------------------------H-cC-------------C----
Confidence 22211110 000000 0 00 0
Q ss_pred CCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCC--CChHHHHHHHHHHhc-ccCHHHHHHHHHHH
Q 000156 274 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAI 349 (2015)
Q Consensus 274 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~--~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l 349 (2015)
+ +.+.+.+.+.+=..+.+|...|..++. .+.... -+ ...++.|.+.+. +.+..+...|+.+|
T Consensus 191 -----------V--p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 191 -----------V--DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred -----------H--HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 0 134444555555666777776666552 221100 01 123567777776 56778999999999
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHHHHhccC---------cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-Ch
Q 000156 350 GNLARGLRTHFSGS--SRFLLPVLLEKLKEK---------KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VP 417 (2015)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL~klkdk---------k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~K-np 417 (2015)
..|+.+- .++... -...+|.|++.+... +...++.+.-||..++.. ...+++.+...+.+. ..
T Consensus 257 ~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 257 EALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchH
Confidence 9999741 222222 124577777777532 355678888888888653 356777776666542 34
Q ss_pred HHHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhCchHHHHHHHhccHHHH
Q 000156 418 LVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2015)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~L~Ds~~~-VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2015)
.+-..++..+..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. ..+|+..+...+..-|. .
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--i 406 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--K 406 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--h
Confidence 44445555555554433221 111112 24678999999988777 4767776664 44566544444433221 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000156 494 NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQE 573 (2015)
Q Consensus 494 kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~ 573 (2015)
+-+-..+...+ ..+.......+
T Consensus 407 k~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------- 428 (2102)
T PLN03200 407 KVLVGLITMAT---------------------------ADVQEELIRAL------------------------------- 428 (2102)
T ss_pred hhhhhhhccCC---------------------------HHHHHHHHHHH-------------------------------
Confidence 11111111100 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHh
Q 000156 574 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVC 647 (2015)
Q Consensus 574 ~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~Lv~~L~ 647 (2015)
+... .-+.+........-.-+-++..|.+.+-..|..|+..|..+..+.++.. .....|+++|
T Consensus 429 -~~L~---------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL- 497 (2102)
T PLN03200 429 -SSLC---------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL- 497 (2102)
T ss_pred -HHHh---------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-
Confidence 0000 0011222222333344788899999999999999999887765422210 1134455555
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHH--HHHHHHHHhhhc--chhhhHHHHHHHHHHHhhhChhHHHHHHH
Q 000156 648 MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLY 723 (2015)
Q Consensus 648 ~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--D~K~r~~a~~~L~~l~e~~~~~~Vl~~L~ 723 (2015)
...+..+++.+.-++..+... ..-.+..+ ..+++.|++-+. +.+.+..|..+|..+...... .++..++
T Consensus 498 -----~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv 570 (2102)
T PLN03200 498 -----ETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLT 570 (2102)
T ss_pred -----cCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHH
Confidence 334567888888888777642 11112233 236777777664 467888898899888765444 3556677
Q ss_pred HHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 724 ~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
.. +.+.+++++..++..+..++..-.... .....-++.+..+ +.+.++.+++.|..++..++....+
T Consensus 571 ~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d------ 642 (2102)
T PLN03200 571 AL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD------ 642 (2102)
T ss_pred HH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH------
Confidence 65 478889999999998888765221110 1112356777777 8999999999999998877642211
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHH
Q 000156 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878 (2015)
Q Consensus 799 ~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~ 878 (2015)
+...+-. ....+-++..+.+.+-++|+++...|.
T Consensus 643 ------~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 643 ------LCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred ------HHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0000000 002234777788888999999999999
Q ss_pred HHHHhcccc-CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHH
Q 000156 879 KILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957 (2015)
Q Consensus 879 ~ll~~a~~~-I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~ 957 (2015)
.+....+.. ...-.-...++.|.+.|++.+..++..|+.++..|+..-...-+-.....+++++..|.+....+|+.|.
T Consensus 677 nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 677 ALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 988522100 0000013467889999999999999999999999986543222112345689999999999999999999
Q ss_pred HHHHHHHHhcCchhhH----------HHHHHHHhcCCC-ChhH--HHHHHHHHHHHhccCCC-CC------ChhhhHHHH
Q 000156 958 TVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPA 1017 (2015)
Q Consensus 958 ~aL~~i~~~~gl~~ll----------~~l~~~L~~~k~-~p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl 1017 (2015)
.+|..++.+.+.+.++ ..+.+.|...+. +... -.+++.|+++.=..... .+ +...-+.||
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 9999999888766533 335566663321 1221 34566666652111111 11 234557889
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHH
Q 000156 1018 SIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1018 ~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
+.||.+.++.|-..|.+.|..+.+
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999998887763
No 14
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2e-11 Score=151.64 Aligned_cols=350 Identities=18% Similarity=0.185 Sum_probs=252.0
Q ss_pred CchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH---
Q 000156 46 KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV--- 121 (2015)
Q Consensus 46 ~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~--- 121 (2015)
.||..-.+...+-.-+.-.-..+|.....|+-.++-......+.+ +-.++.++++ .+...+..+.-.+--++
T Consensus 90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~----~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY----VLELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH----HHHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 344333333333344555667888888888877765543322222 3334445566 35455544433333333
Q ss_pred --hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 000156 122 --ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCR 197 (2015)
Q Consensus 122 --E~~~~~~v~~~L~~~~~~KnpKv~~-~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~ 197 (2015)
|......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|++..+.||.+|...+..+.+
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2234567888998988888776555 4666666666667754333 46788888899999999999998877666665
Q ss_pred HhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 198 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD 277 (2015)
Q Consensus 198 ~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~ 277 (2015)
.+.+-.++..
T Consensus 246 ~~~~~aVK~l---------------------------------------------------------------------- 255 (569)
T KOG1242|consen 246 CLSAYAVKLL---------------------------------------------------------------------- 255 (569)
T ss_pred hcCcchhhHh----------------------------------------------------------------------
Confidence 5543222111
Q ss_pred cccccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh
Q 000156 278 PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL 356 (2015)
Q Consensus 278 ~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L 356 (2015)
+| .....+.+.+|+.+..+++.|..++. .|+.......++++.|.+++.|+.+.|+..+..|+..++...
T Consensus 256 -------lp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 256 -------LP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred -------hh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 11 12222333499999999999998884 666666667899999999999999999999999999999888
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000156 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (2015)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 434 (2015)
++ +-...++|.|++.+.+.+..+.++......+=|-+ ...+++-++|.+..++..++..+|..++..+..+..-+
T Consensus 327 dN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 327 DN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred cc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 76 45888999999999999977775554444332212 23567788999999999999999999999998877776
Q ss_pred -ChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH
Q 000156 435 -SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2015)
Q Consensus 435 -~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2015)
++..+.++++.++|.+...+.|+.|+||..|.++|+.+.+.+|+..+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 66778899999999999999999999999999999999999998754
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.47 E-value=3.2e-10 Score=139.43 Aligned_cols=581 Identities=18% Similarity=0.187 Sum_probs=333.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~K 415 (2015)
|.....+...-.+|..|++..|=. .++..+=--+..+..-||+-...|...++.+ .+++.++|.|.+.+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 445555666666777666643311 1222222233456677888888888888876 78899999999888875
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---chHHHHHHHhccHH
Q 000156 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEKLDDV 491 (2015)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G---e~~~~~~l~~Ld~~ 491 (2015)
+|+.|.-+..+...+..-.+-+ ..++++.++.++-++|.|....||.-++-++.++.+..+ -+.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776654433333 347789999999999999999999999999999998865 34455444443221
Q ss_pred HHH----HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC-CCcc-c-ccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 000156 492 RRN----KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE-ASES-S-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (2015)
Q Consensus 492 ~~k----kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~-~-~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~ 564 (2015)
.+. -+-..++..|-.-+-.-+. .+.- ..+- - ..+.+ .+ |-- ..|.-.-+
T Consensus 603 ir~hrgk~laafLkAigyliplmd~e----------ya~yyTrevmlil~rEf-~s------PDe----emkkivLK--- 658 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMDAE----------YASYYTREVMLILIREF-GS------PDE----EMKKIVLK--- 658 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccccHH----------HHHHhHHHHHHHHHHhh-CC------ChH----HHHHHHHH---
Confidence 111 0111111111000000000 0000 0000 0 00000 00 000 00000000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHH---hhccCcHHHHhhhccCCHHHHHHHHHHHHHHH----Hhccccch
Q 000156 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR---LGSLIPADTVGQLKSAVWKERLEAISSLRQQV----EAVQNLDQ 637 (2015)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~---~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v----~~~~~~~~ 637 (2015)
-.++|++. -..++-.+++-.++.+-|..|.++-......+ ........
T Consensus 659 -------------------------Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 659 -------------------------VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred -------------------------HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 00000000 01234456777788888998888732222221 11111111
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHhhhcchhhhH-HHHHHHHHHHhhhC
Q 000156 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRA-HAMKCLTTFSEAVG 714 (2015)
Q Consensus 638 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~LveKlgD~K~r~-~a~~~L~~l~e~~~ 714 (2015)
+.+.+-|.+. .++|.+.|-.....+.+..++.+.+ +|..+....++.+++--+....+-+ ....++..++..++
T Consensus 714 ~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 714 SDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred chHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 2334445443 3788888888888888888888765 4556666667777766555432211 12234444444443
Q ss_pred h------hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 000156 715 P------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (2015)
Q Consensus 715 ~------~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~ 788 (2015)
. ..++..++..+ .+|+|+||..++..++.+..-....+ -..++.. |=+.||.
T Consensus 791 ~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~--ee~~m~~-------------------lGvvLyE 848 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCG--EEKLMGH-------------------LGVVLYE 848 (1172)
T ss_pred hccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhcc--HHHHHHH-------------------hhHHHHH
Confidence 2 22444444453 79999999999988877654221100 0011111 1123444
Q ss_pred HhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCC-cccccccchHHHHhcCCCCh
Q 000156 789 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-EDISGKFTPTLVKSLESPDW 867 (2015)
Q Consensus 789 ~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr-vdIs~~L~~~ll~~l~d~~W 867 (2015)
++|..-..-| +.++..|.....-+.-. ...|+ .||...|+| -+.++.-
T Consensus 849 ylgeeypEvL----gsILgAikaI~nvigm~-----------------------km~pPi~dllPrltP----ILknrhe 897 (1172)
T KOG0213|consen 849 YLGEEYPEVL----GSILGAIKAIVNVIGMT-----------------------KMTPPIKDLLPRLTP----ILKNRHE 897 (1172)
T ss_pred hcCcccHHHH----HHHHHHHHHHHHhcccc-----------------------ccCCChhhhcccchH----hhhhhHH
Confidence 4443321111 12222332222211100 01111 133333444 3456677
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC
Q 000156 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D 947 (2015)
|+-..+++.+..|+..+..++....+--+.--|...|+--|+.++..|.+.+|.|+++.|+. .++-.+++.|+.
T Consensus 898 KVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkv 971 (1172)
T KOG0213|consen 898 KVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchH
Confidence 88889999999998755344443323334445566677789999999999999999999976 678899999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHH-HHhhcCCCC
Q 000156 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKP-ASIAMTDKS 1025 (2015)
Q Consensus 948 ~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~p-l~~~L~D~~ 1025 (2015)
+.-..|....-++.-+++.||+=.++|.|..-...+ +..+..++|.-|.-.|+-++. +.+..-.+.| |-.+|.|++
T Consensus 972 qeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD 1049 (1172)
T KOG0213|consen 972 QERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRD 1049 (1172)
T ss_pred HHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcccc
Confidence 888888888889999999999989999888777665 345667777666655554433 2344444555 667999999
Q ss_pred hHHHHHHHHHHHH
Q 000156 1026 SDVRKAAEACIVE 1038 (2015)
Q Consensus 1026 ~~VR~aA~~~L~~ 1038 (2015)
.--|..|..++..
T Consensus 1050 ~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1050 LVHRQTAMNVIKH 1062 (1172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988766543
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=3e-10 Score=150.09 Aligned_cols=566 Identities=17% Similarity=0.190 Sum_probs=349.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH
Q 000156 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (2015)
Q Consensus 403 ~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2015)
-+...+...+.+-||..|++.+-||-..++.+++ ....-.+++|..+++.+|.|.+.-+.|.|.+.|+.++..-+...=
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3445556677899999999999999999988763 233345688999999999999999999999999988887654321
Q ss_pred HHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCC
Q 000156 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (2015)
Q Consensus 482 ~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k 561 (2015)
..+.+.| . +...+|.. .+ ..+. .+ ..-++.+.+ |+.|
T Consensus 898 ~~LV~sL----~---~tl~~Gkr-----~~--~~vs--------~e------TelFq~G~L-g~Tp-------------- 934 (1702)
T KOG0915|consen 898 KSLVDSL----V---NTLTGGKR-----KA--IKVS--------EE------TELFQEGTL-GKTP-------------- 934 (1702)
T ss_pred HHHHHHH----H---HHHhcccc-----cc--ceec--------cc------hhcccCCcC-CCCC--------------
Confidence 1111111 1 11111110 00 0000 00 000111110 1111
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhh---c--cCCHHHHHHHHHHHHHHHHh-cccc
Q 000156 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQL---K--SAVWKERLEAISSLRQQVEA-VQNL 635 (2015)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L---~--s~~Wk~Rl~a~e~L~~~v~~-~~~~ 635 (2015)
+|+ .--+.-|+.+.++++-.|+++-++ . +..|.-|..|.-.|..+... ....
T Consensus 935 -----~Gg-----------------~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl 992 (1702)
T KOG0915|consen 935 -----DGG-----------------KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKL 992 (1702)
T ss_pred -----CCC-----------------cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhh
Confidence 110 012678999999999999997644 3 45699999999999998876 3334
Q ss_pred chHH-HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhh
Q 000156 636 DQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEA 712 (2015)
Q Consensus 636 ~~~~-~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~ 712 (2015)
.++. +.+.|++.. --|.+..|++.+-++|..++...+.....++..++..|+..+++. ++|+.+.-+|..+..-
T Consensus 993 ~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 4443 344444432 268999999999999999998655666778899999999999996 7899988888877665
Q ss_pred hChhHH-------HHHHHHHhhhCC-Chh-HHHHHHHHHHHHHHHhCCC--CCC----hhhHHHHHHhcCCCCCchhHHH
Q 000156 713 VGPGFI-------FERLYKIMKDHK-NPK-VLSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAATRN 777 (2015)
Q Consensus 713 ~~~~~V-------l~~L~~~l~~~K-npK-v~~~~l~~L~~li~~fG~~--~l~----~k~li~~l~~~gL~~sn~~VR~ 777 (2015)
-+.+.+ +..+++.+-+.| +.| +-..++..|++++-..+-. +.. +..+++++..-|.-++-++||.
T Consensus 1070 ~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1070 RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 444433 444444432222 122 1234566677766554422 111 2346777755466688899999
Q ss_pred HHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHH-hcCCCCCC------CCCcccccCccccCCC-CCCCCCCCCCcc
Q 000156 778 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY-EKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLPRED 849 (2015)
Q Consensus 778 aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef-~k~~~~~~------p~p~R~~r~~~~~~s~-~~~~~d~lprvd 849 (2015)
.++.++..|.++.|..+++|+.+|.|.++..+..-= ..+.+-.. .......|.+.++++. -...++.++-.|
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 999999999999999999999999998876653210 00000000 0000011221111100 000123344444
Q ss_pred c--ccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHh
Q 000156 850 I--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 850 I--s~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~al 926 (2015)
+ ..++.|.+.+.+... .--.|..+..-+.-+.......++|.. |.++.+|...+.|.|..++..-...++.|++.-
T Consensus 1230 ~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 4 345666666555433 445566666666666666667888886 999999999999999999999999999999988
Q ss_pred Ch-hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000156 927 GP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 927 g~-~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
.+ .+.++++.++..++....+.++.....+..-.+...+.+ ..+.++|.+.=+.... ....+++++-+- .+.
T Consensus 1309 s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dvW--~e~ 1383 (1702)
T KOG0915|consen 1309 SPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDVW--AEL 1383 (1702)
T ss_pred ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHHH--HHh
Confidence 77 578888888888887777766433333333222222222 2467888655444321 111233332221 111
Q ss_pred CCCCC-----ChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1004 LSGFP-----DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1004 ~~~~~-----~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
.+... -...++.+ +...+++..+.+|+.+..++..+...
T Consensus 1384 vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1384 VSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 22211 12334444 44567888899999998888766533
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.3e-10 Score=139.64 Aligned_cols=587 Identities=15% Similarity=0.153 Sum_probs=359.3
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHH
Q 000156 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLE 373 (2015)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~ 373 (2015)
--|...++.|.-+.. .|......+.+++-++..... +++..|+..|.+||-.--.-.+..|.. ....++..+.+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 466778888887774 233222345556555555443 778888888888776655545566753 35568888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh-cC------------
Q 000156 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-SS------------ 435 (2015)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l-----~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~-~~------------ 435 (2015)
........|+.++..||..++.-+...+ +.++..-+.++++.|..|..++.+|-..+.+. .+
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999885411122 23555556788999999999999988854432 11
Q ss_pred --hh--HHH-HhhhhHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcC
Q 000156 436 --KA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2015)
Q Consensus 436 --~~--~l~-~~l~~l~p~l~k~L~-------Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (2015)
+. .+. ..++.++|.|.+.|. |-+=.+-.||-.||..+..++|+..+.+.
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V------------------- 365 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV------------------- 365 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh-------------------
Confidence 10 111 234566777776662 11123556666677777777665432211
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 000156 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (2015)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 583 (2015)
T Consensus 366 -------------------------------------------------------------------------------- 365 (859)
T KOG1241|consen 366 -------------------------------------------------------------------------------- 365 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccc--hHH-HHHHHHHhcCCCCcccHHHHH
Q 000156 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSV-EILVRLVCMLPGWSEKNVQVQ 660 (2015)
Q Consensus 584 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~--~~~-~~Lv~~L~~~pg~~DsN~qV~ 660 (2015)
-+=+.+.+.+.+|+.|.+|+..+++++.+..+.. ... +.+..++. ...|++..|
T Consensus 366 -------------------l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~V- 422 (859)
T KOG1241|consen 366 -------------------LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWV- 422 (859)
T ss_pred -------------------HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhh-
Confidence 1223356788899999999999999988754321 110 11111110 012333222
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHH
Q 000156 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGIL 740 (2015)
Q Consensus 661 ~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~ 740 (2015)
+++..+.+..+++-+.+... -..-+..+++.++.++ +..|+|...++.
T Consensus 423 ------------------kdTaAwtlgrI~d~l~e~~~------------n~~~l~~~l~~l~~gL--~DePrva~N~CW 470 (859)
T KOG1241|consen 423 ------------------KDTAAWTLGRIADFLPEAII------------NQELLQSKLSALLEGL--NDEPRVASNVCW 470 (859)
T ss_pred ------------------cchHHHHHHHHHhhchhhcc------------cHhhhhHHHHHHHHHh--hhCchHHHHHHH
Confidence 23444555555544332110 0011233455555554 578999999988
Q ss_pred HHHHHHHHh---CCCC----CCh---hhHHHHHHhc-CCCC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHH
Q 000156 741 WMVSAVEDF---GVSH----LKL---KDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (2015)
Q Consensus 741 ~L~~li~~f---G~~~----l~~---k~li~~l~~~-gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~ 808 (2015)
.+..+.+.. +... ... ..++.-+.+. ...+ ...+.|.+|.+.|++|-++...+..+.+.++-+.+++.
T Consensus 471 Af~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~k 550 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEK 550 (859)
T ss_pred HHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 887777533 2221 111 2333333321 0112 23579999999999999999988877777777777777
Q ss_pred HHHHHhcCCCCCCCCCccc-ccCcccc-----CC---CCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHHHHH
Q 000156 809 LDAEYEKNPFEGTVVPKKT-VRASEST-----SS---VSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVN 878 (2015)
Q Consensus 809 Le~ef~k~~~~~~p~p~R~-~r~~~~~-----~s---~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~ 878 (2015)
|+.-++..... -..|. ...=++. ++ ..+ . .+-.+++.|-.-|++.++.+ +--+-.+|+-++.
T Consensus 551 l~q~i~~~~l~---~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 551 LDQTISSQILS---LADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 77666511000 00000 0000000 00 000 0 11234555666788888773 4456778888888
Q ss_pred HHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH--HHHHH
Q 000156 879 KILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMREC 955 (2015)
Q Consensus 879 ~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~--~Vr~a 955 (2015)
.+++..++.+.... ..+.+.|..-| +-....|...|..+++.|+.+|+.+|.+|+..++..++++|+.... .|.-+
T Consensus 623 tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 88875444443332 45555665556 4456789999999999999999999999999999999999998754 58888
Q ss_pred HHHHHHHHHHhcC--chhhHHHHHHHHhcCC-------------CChhHHHHHHHHHHHHhccCCCC---CChhhhHHHH
Q 000156 956 TLTVLDAWLAAVH--LDKMVPYVTTALTDAK-------------LGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPA 1017 (2015)
Q Consensus 956 a~~aL~~i~~~~g--l~~ll~~l~~~L~~~k-------------~~p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl 1017 (2015)
...|.+.++-.+| .++.+..+...|+... +.-.+|..+++.-.-.+..+... ..+...+++|
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 9999999999987 4666676666665211 01357888887776666666532 2233444555
Q ss_pred Hhhc-----CCCC-hHHHHHHHHHHHHHHHHcChhHHH
Q 000156 1018 SIAM-----TDKS-SDVRKAAEACIVEILRAGGQETIE 1049 (2015)
Q Consensus 1018 ~~~L-----~D~~-~~VR~aA~~~L~~l~~~~G~~~~~ 1049 (2015)
++.+ ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 5432 3333 556677778888899999976544
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=3.3e-07 Score=129.76 Aligned_cols=807 Identities=16% Similarity=0.148 Sum_probs=464.6
Q ss_pred hhhhhhhccC--ChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH--hhhcc
Q 000156 288 SGFWEGVKAT--KWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHF 360 (2015)
Q Consensus 288 ~~f~~~l~s~--kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f 360 (2015)
..+.+++.+. +-++|+.++.+|+.+++... ..-.+....++.|...|...+..+...|+.++..|+.. .+...
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I 95 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV 95 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3677788765 77999999999999985321 11011233566677777655677788888888888753 22211
Q ss_pred hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhHHHHHHHHhhcCCh---HHHHHHHHHHHH
Q 000156 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTF 429 (2015)
Q Consensus 361 ~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~-~~~-------l~~il~~l~~~L~~Knp---~vR~~~l~~L~~ 429 (2015)
.....+|+|++.+++.....++.+..+|..+..++ +.. -...+|.+...+++.+. -++..++..|..
T Consensus 96 --v~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 96 --LLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred --HHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 13678999999999999999999999999987641 010 13457888888886542 244444555555
Q ss_pred HHHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCC
Q 000156 430 CIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (2015)
Q Consensus 430 ~l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~ 508 (2015)
+.... .......+ .-.+|.++.+|.+.++.++..|..++..++...++. . ..|.+ . |.
T Consensus 174 Ls~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~------------~aVIe---a-Ga--- 232 (2102)
T PLN03200 174 LCGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-I------------SKVLD---A-GA--- 232 (2102)
T ss_pred HhcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-H------------HHHHH---C-CC---
Confidence 43322 21111112 237899999999999999998888776664433321 1 11111 0 00
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 000156 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (2015)
Q Consensus 509 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (2015)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHhhccCcHHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000156 589 MSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (2015)
Q Consensus 589 ~s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l 667 (2015)
-+.+++.|.+ .+-..|.+|+-.|.++..+.. ...+.+++ ..++..|
T Consensus 233 --------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~L 279 (2102)
T PLN03200 233 --------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPAL 279 (2102)
T ss_pred --------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHH
Confidence 0233444433 334556666666665543211 11111111 1111111
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000156 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2015)
Q Consensus 668 ~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2015)
..++.. +. +.+ + ..-...-+++.|.-+|..+|.-. ..++..|...+.......+...++..|..++.
T Consensus 280 I~lL~s-p~--~e~----~----~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 280 INATVA-PS--KEF----M----QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHhC-cc--hhh----h----ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 111110 00 000 0 00001123455555666665432 23444444443223355566677778877776
Q ss_pred HhCCCC-----CChhhHHHHHHhcCCCCCchh-HHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000156 748 DFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 821 (2015)
Q Consensus 748 ~fG~~~-----l~~k~li~~l~~~gL~~sn~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~ 821 (2015)
.+.... ++...+...+.++ +.+.++. |.+.+..+|..+| |.. .+.+.|... +
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d- 404 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E- 404 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c-
Confidence 654321 1222344556667 7888766 4777777766554 221 111111110 0
Q ss_pred CCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000156 822 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (2015)
Q Consensus 822 p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~ 901 (2015)
..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|.
T Consensus 405 --------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 405 --------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred --------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 012344555555567778888888777742111111000123478888
Q ss_pred hccccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-------CchhhH
Q 000156 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMV 973 (2015)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~-------gl~~ll 973 (2015)
..|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+- .-...+
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 88888889999999999998875322111111 1357999999999999999999999999877422 112467
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000156 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2015)
Q Consensus 974 ~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2015)
|.+...|.+. ++..|..++.-|...+.. . ....+++++..|...++.+...+..+++.+......+.+....
T Consensus 533 ppLV~LL~sg--d~~~q~~Aa~AL~nLi~~-~----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g- 604 (2102)
T PLN03200 533 PALLWLLKNG--GPKGQEIAAKTLTKLVRT-A----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG- 604 (2102)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhc-c----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-
Confidence 7788888866 467787777777655432 1 1345577778787778888888888887776655544322110
Q ss_pred cCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcc
Q 000156 1054 DIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1133 (2015)
Q Consensus 1054 ~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (2015)
.....-...+.+.++..
T Consensus 605 ~~~~ggL~~Lv~LL~sg--------------------------------------------------------------- 621 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS--------------------------------------------------------------- 621 (2102)
T ss_pred hhccccHHHHHHHHcCC---------------------------------------------------------------
Confidence 00111222222222110
Q ss_pred cCCCChHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhh----HHH-
Q 000156 1134 VKDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD----IIE- 1207 (2015)
Q Consensus 1134 ~~~~~k~~R~-~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~----~i~- 1207 (2015)
.+..+. .-..+ +++-..+.++.+.+ ...-.=+-++..|.+.++..+.++.-.|...+.+.... ++.
T Consensus 622 ----s~~ikk~Aa~iL-snL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~ 693 (2102)
T PLN03200 622 ----KEETQEKAASVL-ADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE 693 (2102)
T ss_pred ----CHHHHHHHHHHH-HHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 000000 00000 11222334433322 11112234788888999988888877777766544322 222
Q ss_pred -HHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhc
Q 000156 1208 -VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNF 1286 (2015)
Q Consensus 1208 -~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~v 1286 (2015)
.+..++++ +.+.+..+...+++.|..++..-... .+.=..-.||.|+.-+.+..+.+|+..-..+-++|.-
T Consensus 694 GaV~pL~~L----L~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 694 DAIKPLIKL----AKSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred CCHHHHHHH----HhCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 23444444 58889999999999988765432111 1111234689998888777788899999999999999
Q ss_pred cCccccH----------HHHHhhhcCCChhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHhhccCCh
Q 000156 1287 YSATKTL----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDG 1345 (2015)
Q Consensus 1287 y~~skvf----------~~l~~gl~sKN~r~R--~ecl~~l~~li~~-~g~~~~~~--------~k~l~~ia~~i~drd~ 1345 (2015)
+|...+| .-|++-|++-|.+.- .|.|+.|+.+... +|..-..| +-.|..+..++.+-++
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p 845 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP 845 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh
Confidence 9977644 334555677776554 4699999998873 34332111 2346788889999999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHhhc---CCHHHHHhHHHHHHhh
Q 000156 1346 EIRKAALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1388 (2015)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~v~~~vg~---Ls~~~~s~l~er~kr~ 1388 (2015)
.|-..|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=++
T Consensus 846 ~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 846 LVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 99999999998 45666521 2232 2455567777777654
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.24 E-value=5.3e-08 Score=117.88 Aligned_cols=498 Identities=13% Similarity=0.115 Sum_probs=295.7
Q ss_pred HHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch--hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH
Q 000156 329 TLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (2015)
Q Consensus 329 ~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il 405 (2015)
......+ ++...|+..|++||-.=..-.+..|. -...-++..+.+........++.++.-||..++.-+......++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455 77788888889988875555566664 33557888888989889999999999999987743222333444
Q ss_pred HHH-----HHHhhcCChHHHHHHHHHHHHHHH-hcChhH--------------HH-HhhhhHHHHHHHHhcC----C---
Q 000156 406 EDV-----KTSVKNKVPLVRSLTLNWVTFCIE-TSSKAA--------------VL-KVHKDYVPICMECLND----G--- 457 (2015)
Q Consensus 406 ~~l-----~~~L~~Knp~vR~~~l~~L~~~l~-~~~~~~--------------l~-~~l~~l~p~l~k~L~D----s--- 457 (2015)
+.. ..++++.|-+|+.++.+|-..+.+ ...-.- |. ...++++|.+.++|.. .
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 433 346678999999999998855443 221110 00 1235566777666622 1
Q ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccc
Q 000156 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (2015)
Q Consensus 458 ~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 537 (2015)
+=.+-.+|..||..|.+..|+..++|.+
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~pVl---------------------------------------------------- 368 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRPVL---------------------------------------------------- 368 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHHHH----------------------------------------------------
Confidence 1235566777777777776665443221
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHH
Q 000156 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (2015)
Q Consensus 538 ~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 617 (2015)
+=+.+.+++.+|..
T Consensus 369 ------------------------------------------------------------------~FvEqni~~~~w~n 382 (858)
T COG5215 369 ------------------------------------------------------------------GFVEQNIRSESWAN 382 (858)
T ss_pred ------------------------------------------------------------------HHHHHhccCchhhh
Confidence 11235677789999
Q ss_pred HHHHHHHHHHHHHhcccc--chH-HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhc
Q 000156 618 RLEAISSLRQQVEAVQNL--DQS-VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (2015)
Q Consensus 618 Rl~a~e~L~~~v~~~~~~--~~~-~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (2015)
|.+|+..+++.+.+.... ... .+.+..++. ...|+-..|.. ...+|+..|-+.+.
T Consensus 383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~-------------------ttAwc~g~iad~va 440 (858)
T COG5215 383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKS-------------------TTAWCFGAIADHVA 440 (858)
T ss_pred HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhh-------------------HHHHHHHHHHHHHH
Confidence 999999999988774321 111 011111111 01233222222 23333333333322
Q ss_pred chhhhHHHHHHHHHHHhhhCh----hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-----hh---hHHHH
Q 000156 695 DIKTRAHAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-----LK---DLIDF 762 (2015)
Q Consensus 695 D~K~r~~a~~~L~~l~e~~~~----~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-----~k---~li~~ 762 (2015)
+ .++| ..+.+..+-++ ..+|++...|....-.++..|....-. .+ .++.-
T Consensus 441 ~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~ 502 (858)
T COG5215 441 M----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA 502 (858)
T ss_pred H----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence 2 1111 12233333333 467899888888888888877643211 11 23332
Q ss_pred HHhc-CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCC
Q 000156 763 CKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (2015)
Q Consensus 763 l~~~-gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~ 841 (2015)
+.+. .+..-+.+.|.++...|++|..+..+.+.+.+.++-.-.++.|+.-..-.... .. .
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~-----------~ 563 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA-----------T 563 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh-----------h
Confidence 2221 12233457899999999999999998888877777766676666543221100 00 0
Q ss_pred CCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHH
Q 000156 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG 920 (2015)
Q Consensus 842 ~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~ 920 (2015)
+|.. +..++.. .-+.-|..|+....+.|.+.. ..|+..|...|... ...+.......|+
T Consensus 564 eD~~--------~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 564 EDQL--------LVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHH--------HHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 0000 0111111 123346666765445566653 55888888888655 3445567788999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000156 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2015)
Q Consensus 921 ~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2015)
.|+..+|+.|++|+..|+|-+.+.|+.....|...|..-+..++..+|-+- .+ ..+.+ ..-|.+.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df-~~-y~d~~-------------ms~LvQ~ 688 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF-NI-YADVL-------------MSSLVQC 688 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH-HH-HHHHH-------------HHHHHHH
Confidence 999999999999999999999999999999999999998888888876221 11 11111 1112222
Q ss_pred hccCCCCCChhhhHHH-HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1001 LTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1001 l~~~~~~~~~~~ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
+.. +....-++| +++|+.|-...+-.+.+..|..+|..
T Consensus 689 lss----~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 689 LSS----EATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred hcC----hhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 122334555 66777777666666666666666544
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.24 E-value=3.6e-07 Score=113.37 Aligned_cols=572 Identities=16% Similarity=0.195 Sum_probs=337.6
Q ss_pred HHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCC---C
Q 000156 326 VCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCL---N 400 (2015)
Q Consensus 326 l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~---~ 400 (2015)
+.+.|+.+.. -...+-+..+++|+..+|.-+|-..-+|+..++..+=..++|..+.||.-+..||.+++.. +.. .
T Consensus 512 llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 512 LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 3344444444 2245567788999999999999988899999999999999999999999999999999987 222 2
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 401 l~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++.++.-+..+.. |.. ..=..-|+.+..++.-.....-.-+..+++-.+.+-.+-++.+.++.-.+.+..++...|-+
T Consensus 592 fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 4555665655544 322 11122222222222222211111122334444444444444444444444444444333322
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q 000156 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (2015)
Q Consensus 480 ~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~ 559 (2015)
+--...+-|. +.+..-. .++. ++-++
T Consensus 671 ~~y~r~dilp--------~ff~~fw-----------------------------~rrm-----A~drr------------ 696 (1172)
T KOG0213|consen 671 PAYIRFDILP--------EFFFSFW-----------------------------GRRM-----ALDRR------------ 696 (1172)
T ss_pred HHHHhhhhhH--------HHHhhhh-----------------------------hhhh-----hcccc------------
Confidence 1100000000 0000000 0000 00000
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCCCCCC---CHHHHHHHhh-ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhcccc
Q 000156 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEM---SLEEIESRLG-SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL 635 (2015)
Q Consensus 560 ~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~---s~ee~e~~~~-~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~ 635 (2015)
.+.. +.-++..++. +.+-.-++..+.|..-..|...++.+..++...+..
T Consensus 697 --------------------------~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 697 --------------------------NYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred --------------------------chhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 0000 0011111110 111234566778888888888888888888775443
Q ss_pred c--h-HHHHHHHHHhcCCCCc--ccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHH
Q 000156 636 D--Q-SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTT 708 (2015)
Q Consensus 636 ~--~-~~~~Lv~~L~~~pg~~--DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~ 708 (2015)
+ . .-+-+++.+.. .|. ++.-.|+-.+|-.+ +..++.-.+.++..++..++-+|-+ +++|..|.+++..
T Consensus 751 diderleE~lidgil~--Afqeqtt~d~vml~gfg~V---~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILY--AFQEQTTEDSVMLLGFGTV---VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccHHHHHHHHHHHHH--HHHhcccchhhhhhhHHHH---HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 2 1 12334443321 132 22223444444333 3333322345566677777777766 5789999888887
Q ss_pred HHhhh---ChhHHHH----HHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC--ChhhHHHHHHhcCCCCCchhHHHHH
Q 000156 709 FSEAV---GPGFIFE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNAT 779 (2015)
Q Consensus 709 l~e~~---~~~~Vl~----~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l--~~k~li~~l~~~gL~~sn~~VR~aA 779 (2015)
++-.. +-+..+. .|++.+ .-.-|.|.-..|..|..++.-+|.... +++.+++-+-.. |.+...-|...+
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~ 903 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENC 903 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHH
Confidence 76543 2233333 345554 567899999999999999998887654 578899988888 999999999999
Q ss_pred HHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHH
Q 000156 780 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (2015)
Q Consensus 780 ~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll 859 (2015)
+.+++.+... |+. |. +.| +.. .|.=+|+
T Consensus 904 IdLvg~Iadr-gpE---~v-------------------------~aR----------------------EWM-RIcfeLl 931 (1172)
T KOG0213|consen 904 IDLVGTIADR-GPE---YV-------------------------SAR----------------------EWM-RICFELL 931 (1172)
T ss_pred HHHHHHHHhc-Ccc---cC-------------------------CHH----------------------HHH-HHHHHHH
Confidence 9999988643 211 00 000 000 1334666
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
+.+.+.+=.+|..|.+.++-|.. .|.| .+++..|..-|+-.....+.-+--.|+-+++.+| +| .++|
T Consensus 932 elLkahkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVLP 998 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVLP 998 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhhH
Confidence 66766666789999998887653 4554 4577777665532222222212222333333333 33 6899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-C--CCh
Q 000156 940 DILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F--PDA 1010 (2015)
Q Consensus 940 ~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~--~~~ 1010 (2015)
.+++-+.-...+|.+-...+|..+++.+| +-.+.|.|.++|-+. .+.-|+...+.+.-..-+... . ..+
T Consensus 999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~ 1076 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDAL 1076 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHHH
Confidence 99999999999999999999999999887 346778888888765 356677666655432222221 1 123
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1011 ~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
.+++.-+...+-|.++-|-.+..+|+..+...+|...|.+++
T Consensus 1077 iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1077 IHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 445555777789999999999999999999999999998886
No 21
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=99.23 E-value=9.1e-09 Score=123.43 Aligned_cols=211 Identities=19% Similarity=0.274 Sum_probs=174.2
Q ss_pred hhhhhc-cCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000156 290 FWEGVK-ATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2015)
Q Consensus 290 f~~~l~-s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2015)
....+. +..-.+|++|+.+|..+... -.++...|.+|+..+..++.| .+......|++.|+.+++.....|..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333443 45888999999999987742 334556789999999999998 78888999999999999999999999999
Q ss_pred hHHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000156 366 FLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (2015)
..+-.+|+..+|.... ++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...++
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 9999999999998764 566666667777665 333 334444444444444455678889999999999998999999
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcC
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~ 503 (2015)
+++|.++++.+.+...||++|.-||.++...+|++.+.|++.+|...+++.|+=|+.++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988899999999999999999888764
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.9e-06 Score=102.91 Aligned_cols=565 Identities=16% Similarity=0.149 Sum_probs=337.3
Q ss_pred ccCChHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-------Hhhhcchhh--
Q 000156 295 KATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS-- 363 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~--~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~-- 363 (2015)
.+.+-+.|..|+..|.+|.+- ..+.+.--..++..-.+.+...|-.|...|+..-..++. ..+..++.+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 566778899999999988741 111111112244444556677787787777665553332 223333333
Q ss_pred ----------hHhHHHHHHHHhcc--Cc-----HHHHHHHHHHHHHHHHhcC--CChHhHHHHHHHHhhcCChHHHHHHH
Q 000156 364 ----------SRFLLPVLLEKLKE--KK-----PTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTL 424 (2015)
Q Consensus 364 ----------~~~llp~LL~klkd--kk-----~~V~~aa~~aL~al~~~~~--~~l~~il~~l~~~L~~Knp~vR~~~l 424 (2015)
+..++|.||+.+-. .. =++..|+..||.-+... | .=+.-++|.|...+++.+|.-|..+.
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 34899999999833 22 24788999999877764 2 11344566666677789999999988
Q ss_pred HHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCC
Q 000156 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (2015)
Q Consensus 425 ~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~ 504 (2015)
-.+...+..-.+..+.+.....+|.+...+.|+.--||+.+.-+|+.+...+.+...+... -..++.-++++.-
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLN 459 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhh
Confidence 8888888776666777888999999999999999999999999999999888754322110 1112222222210
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 000156 505 GDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV 584 (2015)
Q Consensus 505 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~ 584 (2015)
+. |. .+ . ..
T Consensus 460 De-------------------Pr--------va------------------------------------~----N~---- 468 (859)
T KOG1241|consen 460 DE-------------------PR--------VA------------------------------------S----NV---- 468 (859)
T ss_pred hC-------------------ch--------HH------------------------------------H----HH----
Confidence 00 00 00 0 00
Q ss_pred CCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCC---CCcccHHHHHH
Q 000156 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP---GWSEKNVQVQQ 661 (2015)
Q Consensus 585 ~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~p---g~~DsN~qV~~ 661 (2015)
.-..++.-|. +++..-+. ...+..++..+.++.-|.+.- .-+++| .+.
T Consensus 469 CWAf~~Laea--------------------------~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN--LR~ 519 (859)
T KOG1241|consen 469 CWAFISLAEA--------------------------AYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSN--LRS 519 (859)
T ss_pred HHHHHHHHHH--------------------------HHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhh--HHH
Confidence 0000000000 00000000 001111223444554443221 124455 567
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHH
Q 000156 662 QVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (2015)
Q Consensus 662 ~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~ 741 (2015)
.++++|..++..+++-....+..+.+.+.+||.. ++. .+++...-.++--.++.-.+.+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q---------~i~------------~~~l~~~dr~q~~eLQs~Lc~~ 578 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ---------TIS------------SQILSLADRAQLNELQSLLCNT 578 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH---------HHH------------HHhccHhhHHHHHHHHHHHHHH
Confidence 8899999999876543333333444445555433 111 0111110011112234445677
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCC
Q 000156 742 MVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (2015)
Q Consensus 742 L~~li~~fG~~~l~-~k~li~~l~~~gL~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~ 819 (2015)
|..++..+|..... ...++..+... ++. ....|-+-|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 579 Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~------ 651 (859)
T KOG1241|consen 579 LQSIIRKVGSDIREVSDQIMGLFLRI-FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ------ 651 (859)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch------
Confidence 88888888874322 34566666666 777 4566889999999999999999999999888887766653311
Q ss_pred CCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000156 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 899 (2015)
Q Consensus 820 ~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~ 899 (2015)
++.+-..++-.+..+.+.-+..|.|.. .+++..
T Consensus 652 ----------------------------------------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~ 684 (859)
T KOG1241|consen 652 ----------------------------------------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMTV 684 (859)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 122233445556666654344566654 789999
Q ss_pred HHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHHh
Q 000156 900 LRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 900 L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L---~D~--------k~~Vr~aa~~aL~~i~~~ 966 (2015)
|.+.|+.. +.+|.-.-+.+++.||-++|.+|++|+..++|.+-..- .|. -..+|+++.++-+.++.-
T Consensus 685 Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg 764 (859)
T KOG1241|consen 685 LVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG 764 (859)
T ss_pred HHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998654 45677788999999999999999999999999887655 222 125899999998888877
Q ss_pred cC-------chhhHHHHHHHHh----cCCCChhHHHHHHHHHHHHhccCCCC---C-ChhhhHHH-HHhhcCCCChHHHH
Q 000156 967 VH-------LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRK 1030 (2015)
Q Consensus 967 ~g-------l~~ll~~l~~~L~----~~k~~p~~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~~VR~ 1030 (2015)
++ +..++|.|...+. ++..+..+-..+++.+......++.. . ...+++.- |..+..-+....|+
T Consensus 765 lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~ 844 (859)
T KOG1241|consen 765 LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKD 844 (859)
T ss_pred hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHH
Confidence 65 2345555555543 22222234455666666655555431 1 12345555 44566556666777
Q ss_pred HHHHHHHHHHH
Q 000156 1031 AAEACIVEILR 1041 (2015)
Q Consensus 1031 aA~~~L~~l~~ 1041 (2015)
.|.-+...+-+
T Consensus 845 ~A~wa~e~ikr 855 (859)
T KOG1241|consen 845 LARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHH
Confidence 77766655543
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.1e-08 Score=121.90 Aligned_cols=378 Identities=17% Similarity=0.208 Sum_probs=263.2
Q ss_pred cHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchH--HHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000156 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (2015)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~--~~~Lv~~L~~~-pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 679 (2015)
++.+..+|.|+.+..|.+|.-++++++++.-..++. ..-++..|... -.=.++|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999873222222 22334433210 00012222 22444444443333343233
Q ss_pred hHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC
Q 000156 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (2015)
Q Consensus 680 ~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~------~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~ 751 (2015)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ ++.+-+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 47888999999999984 78999999999999876544 3455555542 23333333 333444445554432
Q ss_pred C---CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000156 752 S---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2015)
Q Consensus 752 ~---~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2015)
+ .+++..+++.+..- +-..||.+|..-+..+..|+...+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 2 47888999999987 888999999999888887775444333333322
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhcccc
Q 000156 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 906 (2015)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~--~~~eL~~~L~~rL~D 906 (2015)
+.+.++..++|.+-.+|.-+=..+.+++.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3346677778888888865555566666542 11221 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000156 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (2015)
Q Consensus 907 sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~g---------l~~ll~~l 976 (2015)
++.-++..|+..|.++++--|+++-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999887 577766555444443332 34777888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 977 ~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
...+.+. ..+.|.++++|+.-.+.+.+.. -+..++...+++.|.|++.+|-..+-..+..+...
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888876 4689999999999877777653 34566777799999999999999998888877644
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4.9e-08 Score=118.85 Aligned_cols=400 Identities=15% Similarity=0.174 Sum_probs=281.2
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHH
Q 000156 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (2015)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~ 795 (2015)
.++++++.-.....+.-.|.+.|..+..+.-..|.+... ++.+++.+..+ +++++..||.-|.+.+-.+.+....++.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345544443323333333448888888887777876422 45566666665 9999999999999988877777766666
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
.|++.+-.++. |+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HHhc---------------------------------------------CCccccc-cHHH
Confidence 66654333322 2211 1110011 1122
Q ss_pred HHH----HHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHH
Q 000156 876 AVN----KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (2015)
Q Consensus 876 ~L~----~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~ 951 (2015)
.+. +|+.+... +.+ +.++++.|+.|+.+.|...++.-+..+..|-..-+-+|-.|...+++++++.|+|+...
T Consensus 147 LLdRLikdIVte~~~--tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTESAS--TFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccccc--ccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 222 23322101 222 58999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChhhhHHHHHhhcC
Q 000156 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (2015)
Q Consensus 952 Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (2015)
||.-+..+|..+...+. .+.+++.+.+-++++ +|..+.-++.|+.+.+...+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999987752 456777777777765 5889999999999988765542 334556667888998
Q ss_pred CCCh-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000156 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (2015)
Q Consensus 1023 D~~~-~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (2015)
|... .++..|+..-+.++..++.+....- +
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~---i---------------------------------------------- 332 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE---I---------------------------------------------- 332 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc---c----------------------------------------------
Confidence 8777 5787777555555555544321100 0
Q ss_pred CCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcc
Q 000156 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (2015)
Q Consensus 1102 s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~ 1181 (2015)
+ | ..-+| .+...+++
T Consensus 333 -------------------------d------------------------~----~~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 333 -------------------------D------------------------Y----GSIIE------------VLTKYLSD 347 (675)
T ss_pred -------------------------c------------------------h----HHHHH------------HHHHHhhc
Confidence 0 0 00111 23334455
Q ss_pred cCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHH
Q 000156 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (2015)
Q Consensus 1182 ~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L 1261 (2015)
+.-..|+++++=+.-.....+-+++.+.|-||--+..-+.|+.-.|+.+.|+.+..+..--..-+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567889998888888888888888889899988889999999999999999998654433332 27788888
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHH
Q 000156 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYIL 1297 (2015)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~ 1297 (2015)
++..-+-+--++.+--=|++++|...-+..||..+.
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 888877666777777788999999999999998753
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.14 E-value=4.2e-08 Score=119.36 Aligned_cols=190 Identities=18% Similarity=0.190 Sum_probs=133.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh-----------
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA----------- 929 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~----------- 929 (2015)
-+.++.-|+-...+..+..|+..+...+.+..+--+.--|...|+..|+.++..|-..+|.|+.+.|+.
T Consensus 696 ILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk 775 (975)
T COG5181 696 ILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK 775 (975)
T ss_pred hhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch
Confidence 445666777778888888887654444443333334445566667789999999999999999999874
Q ss_pred ----------------hHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCC
Q 000156 930 ----------------VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKL 985 (2015)
Q Consensus 930 ----------------f~~~~--~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~ 985 (2015)
...|. -.++|.++.-+.-...+|.+-...++..+++.+| +-.+.|.+.++|.+.
T Consensus 776 vqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-- 853 (975)
T COG5181 776 VQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-- 853 (975)
T ss_pred HHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--
Confidence 00110 1456777777777788888888888888888776 234667777777765
Q ss_pred ChhHHHHHHHHHHHHhccCCC-CC--ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 986 GAEGRKDLFDWLSKQLTGLSG-FP--DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~-~~--~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
.|.-|+...+.+.-..-+.+. .. ....++.-+...+-|.++-|-.+..+++..|..++|...|.+++
T Consensus 854 D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 466677766666543333222 11 22445555777789999999999999999999999999999886
No 26
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.03 E-value=8.3e-07 Score=116.85 Aligned_cols=562 Identities=18% Similarity=0.135 Sum_probs=324.8
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 373 (2015)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+.-|...+..=++.+...-+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 4445566677776666554421111111 456777787877 7776665555444444433322 12566777888877
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh---cCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 374 klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~---~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
..-+....||+++.+++..+... .+=....+.+...+. ..-| +-|.-++..+..+....+...+ -..+.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 77888888999999999988764 222223333333222 1122 3355556666665555443222 2567788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCC
Q 000156 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 529 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 529 (2015)
......|..+.||.++.+-++.+.+.++..... ..+.+...
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~------------------------------------ 282 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLI------------------------------------ 282 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHh------------------------------------
Confidence 889999999999999999999999888863111 00010000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhh
Q 000156 530 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 609 (2015)
Q Consensus 530 ~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 609 (2015)
..
T Consensus 283 ------------------------------------------------------------------------------~L 284 (759)
T KOG0211|consen 283 ------------------------------------------------------------------------------QL 284 (759)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred hccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 000156 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 689 (2015)
Q Consensus 610 L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 689 (2015)
+.+..=..|+.|++.+.++.......++....+...+.. -..|.+..|.-..-+....+....+. . ..-...++..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhH
Confidence 011112235555555555544432221111111111110 12344444443333333333332222 0 0111223444
Q ss_pred Hhhhcchh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHH
Q 000156 690 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (2015)
Q Consensus 690 veKlgD~K--~r~~a~~~L~~l~e~~~----~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li 760 (2015)
.+-++|.. .|.++..-...++...+ ++...+.+++.+ ..+.|+.|+......+......+|... .+..++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-CccccC
Confidence 44555543 33333333444444433 333333333322 346777777777766666655555321 234455
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCC
Q 000156 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (2015)
Q Consensus 761 ~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~ 840 (2015)
+..... +.+-.+.||..-+..+..+ +.+... .
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~~---------------------------~~v~~v----~---------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSLL---------------------------EEVNDV----I---------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHHH---------------------------HhccCc----c----------------
Confidence 555554 6666677776554332111 111100 0
Q ss_pred CCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHH
Q 000156 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (2015)
Q Consensus 841 ~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~ 920 (2015)
|. .-.+..+.+.+.....|.+|++|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|.+.+.
T Consensus 472 g~-----~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GI-----STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cc-----hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 00 0011123345555667779999999999999888643211111 224445556678877889999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000156 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2015)
Q Consensus 921 ~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2015)
.++...|..+ +...++|.++...++..-.+|.+...++..++..+|- +.++|.+.....++ .|.+|..++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999665 4468999999999999889999999999999999984 44666666666666 58999999999
Q ss_pred HHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 997 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 997 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
|...+..... +.....+.|+..+| .|.+.+||-.|..++..+..+.-+..
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 9887665543 23456677755554 89999999999999998877665543
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=9.3e-06 Score=108.97 Aligned_cols=286 Identities=15% Similarity=0.188 Sum_probs=189.4
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCch
Q 000156 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 203 (2015)
Q Consensus 127 ~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~---~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~ 203 (2015)
..+.+.|..+..+-||..+.+.+-||...++.-|. .+...+.|+..+..+|++.|.=+.+.|..-++-+|- +|+.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDS- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCc-
Confidence 34556667788899999999999999999998884 234568899999999999999999998877777774 4442
Q ss_pred hhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh-HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 000156 204 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD-KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (2015)
Q Consensus 204 l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~-~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl 282 (2015)
.+|..+.+.|-..|-. |..+- .+- .+.+. .+...-|..+ ....+..|
T Consensus 895 -------~~k~~LV~sL~~tl~~--Gkr~~------~~vs~eTel-Fq~G~Lg~Tp-------~Gg~isTY--------- 942 (1702)
T KOG0915|consen 895 -------SLKKSLVDSLVNTLTG--GKRKA------IKVSEETEL-FQEGTLGKTP-------DGGKISTY--------- 942 (1702)
T ss_pred -------hhHHHHHHHHHHHHhc--ccccc------ceeccchhc-ccCCcCCCCC-------CCCcchHH---------
Confidence 2333334444333321 21110 000 00000 0000011110 11122222
Q ss_pred ccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcch
Q 000156 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (2015)
Q Consensus 283 ~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~ 361 (2015)
++|..|++. +. -.+++--+...-+ .+-=+-...|+--++.|++.-+...+
T Consensus 943 ------------------------KELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 943 ------------------------KELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred ------------------------HHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 233333321 00 1122222222222 11111234556666777777788889
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~----~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
||.+.++|-|.--=-|..+.|+++....-++++.-. .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999998888999999998888777776420 0235678899999999999999999999999999998887
Q ss_pred HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 438 ~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
.+.+.++.+-.++...++|-...||+||-.+...+.++
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78788899999999999999999999998887665544
No 28
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.98 E-value=1.1e-05 Score=99.08 Aligned_cols=691 Identities=16% Similarity=0.219 Sum_probs=376.4
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcCCcHHHHHHHHHHHHHHHHHhc----------
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVADSNAPVQDKALDALIAYLKAAD---------- 84 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~DsN~~vqe~~leal~~~l~~~~---------- 84 (2015)
+.=+++...-..|.+|+..|.+.-.+- .....|++..+++.. -+.|.---..-+-++-++.=+.-..
T Consensus 173 llLkvKNG~~~mR~~~lRiLtdkav~f--g~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvV 250 (975)
T COG5181 173 LLLKVKNGGKRMRMEGLRILTDKAVNF--GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVV 250 (975)
T ss_pred HHhhcccCCchhhHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEE
Confidence 334567777888999999988775432 223455555554443 3555554444555554444322211
Q ss_pred -------hhhhhh--HHHHHHHHHHhhc-C----C-C-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hcCC
Q 000156 85 -------ADAGRY--AKEVCDAIAAKCL-T----G-R-------PKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-KNKV 141 (2015)
Q Consensus 85 -------~~~~~~--~~~v~~~LieK~l-~----~-k-------~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~-~~Kn 141 (2015)
++..+. ..+|+..|+..|. + + | +=+|+..-.+.-.++..-..+.++.-|.... +.|.
T Consensus 251 v~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkS 330 (975)
T COG5181 251 VGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKS 330 (975)
T ss_pred eeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccc
Confidence 011111 2355556665542 1 0 1 1223322222222222222333444443332 4679
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCcC-hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhh-ChH-----
Q 000156 142 AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK-MRD----- 214 (2015)
Q Consensus 142 pKv~~~~l~~L~~~l~~fG~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~-Lk~----- 214 (2015)
|+.+-.|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+..++...|+=-+ .. |+. +.|
T Consensus 331 w~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi-e~-fd~vl~pLw~g~ 408 (975)
T COG5181 331 WEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI-EQ-FDEVLCPLWEGA 408 (975)
T ss_pred hhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch-HH-HHHHHHHHHHHH
Confidence 999999999999999999998776 799999999999999999999999998888888886211 11 111 111
Q ss_pred --HHHHHHHHHHHhcCCCCCCCc-------cchhhhhHhhhhhccccCCCCCCCCCCC---------CCCCCCCCCCCCC
Q 000156 215 --TMKKELEVELVNVSGTARPTR-------KIRAEQDKELGQELISEDVGPGPSEEST---------ADVPPEIDEYELV 276 (2015)
Q Consensus 215 --~q~keLe~~f~k~~~~~~P~R-------~~rs~~~~~~~~ea~~~~~~~~~~~~~~---------~~~~~~iD~~dl~ 276 (2015)
.-=++|-..+ |.-|-.-|.. ++|.... -.-.+..+ ++++.. =...+.++|+-+.
T Consensus 409 ~~hrgk~l~sfL-kA~g~iiplm~peYa~h~tre~m~-iv~ref~s------pdeemkk~~l~v~~~C~~v~~~tp~~lr 480 (975)
T COG5181 409 SQHRGKELVSFL-KAMGFIIPLMSPEYACHDTREHME-IVFREFKS------PDEEMKKDLLVVERICDKVGTDTPWKLR 480 (975)
T ss_pred HhcCCchHHHHH-HHhccccccCChHhhhhhHHHHHH-HHHHHhCC------chhhcchhHHHHHHHHhccCCCCHHHHH
Confidence 1011111111 1112212211 0111000 00000000 000000 0011223444333
Q ss_pred CcccccccCcchhhhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHH
Q 000156 277 DPVDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEA 345 (2015)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kWkeR~ea---------L~~--L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A 345 (2015)
+.| . +.| -+..|.+|.+. +.. |.+.... ..+++.+..-+.|.--.-+..+
T Consensus 481 ~~v------~-pef----F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil~~~~De~ep~r~m~ 541 (975)
T COG5181 481 DQV------S-PEF----FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKILEYYSDEPEPYRKMN 541 (975)
T ss_pred Hhh------c-HHh----hchHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHHhhccCCcchhhhhh
Confidence 311 1 234 45779888765 111 1111111 2345555555566655555666
Q ss_pred HHHHHHHHHHhh-hcch-hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCChHhHHHHHHHHhhcCChHH
Q 000156 346 IQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLNLVDVVEDVKTSVKNKVPLV 419 (2015)
Q Consensus 346 ~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~----~~~~l~~il~~l~~~L~~Knp~v 419 (2015)
+.+...+...++ .+|+ +....++-.++..|.+....+.- ...|..++... +-..+..++..++.-|+||.|.+
T Consensus 542 a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~v 620 (975)
T COG5181 542 AGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDV 620 (975)
T ss_pred hHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccH
Confidence 666666666665 3464 56777888888888776544321 11222221111 12456788888999999999999
Q ss_pred HHHHHHHHHHH---HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHH
Q 000156 420 RSLTLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (2015)
Q Consensus 420 R~~~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI 496 (2015)
|+.++..++.+ +..|..... +.-+--+|...|+.-+|+|=-.-..|+-.+..+.|.+.+
T Consensus 621 R~~aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m--------------- 682 (975)
T COG5181 621 RIRAADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM--------------- 682 (975)
T ss_pred HHHHHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc---------------
Confidence 99888776543 334433222 233344566666777777654444444444444443211
Q ss_pred HHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 000156 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 576 (2015)
Q Consensus 497 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~ 576 (2015)
.||..
T Consensus 683 -------------------------------------------------qpPi~-------------------------- 687 (975)
T COG5181 683 -------------------------------------------------QPPIS-------------------------- 687 (975)
T ss_pred -------------------------------------------------CCchh--------------------------
Confidence 01000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccH
Q 000156 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656 (2015)
Q Consensus 577 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN 656 (2015)
+++| . |. |-++-.+
T Consensus 688 -----------------------~ilP-~------------------------------------lt------PILrnkh 701 (975)
T COG5181 688 -----------------------GILP-S------------------------------------LT------PILRNKH 701 (975)
T ss_pred -----------------------hccc-c------------------------------------cc------Hhhhhhh
Confidence 0000 0 00 1112223
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-c-hhHHHHHHHHHHhhhcc-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCCh
Q 000156 657 VQVQQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732 (2015)
Q Consensus 657 ~qV~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgD-~K-~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~Knp 732 (2015)
.+|....+.++..+..+.+.. + +.|+.+| =.|+|-|.. .| .|..|.+++.-+++++||+-|+..|+..+. ...-
T Consensus 702 ~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeR 779 (975)
T COG5181 702 QKVVANTIALVGTICMNSPEYIGVREWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQER 779 (975)
T ss_pred HHHhhhHHHHHHHHHhcCcccCCHHHHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHH
Confidence 344555555555555554432 2 2344433 345665554 23 789999999999999999999999998872 2222
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHH
Q 000156 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (2015)
Q Consensus 733 Kv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~e 812 (2015)
..|..+--.++-+.+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|..-++|.-.+
T Consensus 780 q~RvctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i----------- 842 (975)
T COG5181 780 QQRVCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI----------- 842 (975)
T ss_pred HhhhhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 22333333333333444432 355555544 7788999999999999999999998776665333
Q ss_pred HhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC
Q 000156 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (2015)
Q Consensus 813 f~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~ 892 (2015)
+|-+.+.+.|.+---|..|+.-+.-+.-++...-....
T Consensus 843 ------------------------------------------tPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 843 ------------------------------------------TPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred ------------------------------------------hHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 33444555666666777787777776643210000001
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2015)
+-.|+..|-.-+-|...-|.+...+.+..+++++|++ .++..+.+.|=.....||..-....+.+.
T Consensus 881 ~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 881 AIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 2234555555556777888899999999999999976 23333445555677778888776666554
No 29
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.9e-08 Score=115.58 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=159.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
-+..+.+++|....++|..++.|.. ++......+++++-.+.+-++..|+.|...||.|++.|+..+.+........++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999884 777777778889889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (2015)
-.|+.+-.+.|..||+.+..||.+++.+ .++..+++.|..+++|.||.+|..++..+.+|+....- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999887777777665541 12234567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+.+..-+.|.-|++|++|.-.+.....+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHH
Confidence 8999999999999999998776544443
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=1.3e-06 Score=121.45 Aligned_cols=270 Identities=18% Similarity=0.131 Sum_probs=158.7
Q ss_pred HHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 000156 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (2015)
Q Consensus 687 ~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~ 764 (2015)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ .++++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 457777777666553 333556666554 677888888888877666432211 12233
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCC
Q 000156 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844 (2015)
Q Consensus 765 ~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2015)
.+ |+++++.||.+|+..|+.+...--..+...|.+-.+.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 44 7778888888888888775411000111122222222211111111110
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 000156 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 845 lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
. -.+.++..+.|.++.+|..+.+.|..+-.. . ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -D-------DVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 0 012355667788888888887777655321 0 222556667778888888888887776552
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~ 1004 (2015)
.. ..+.+.++..|.|....||.+|..+|..+ +-...++.|...|.++ ++.+|.+++.-|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 12345577778888888888888877643 3345567777778776 578888888777652
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
. ........|..+++|.+++||..|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667788888888888887774
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=0.00072 Score=90.42 Aligned_cols=656 Identities=14% Similarity=0.165 Sum_probs=355.4
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhc-ch-hhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000156 315 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2015)
Q Consensus 315 ~~k-i~~~~y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2015)
.|+ +.-..|+++...|...+. .+|-.|...++.||+.|-..-+.. +. +-....+-.++.-.-++++.||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 454 333457888888888887 889999999999999988774422 32 3356677788888889999999999999
Q ss_pred HHHHHHhcCCChHhHHHH-------HHHHhhc-CChHHHHHHHH---HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000156 390 LQAMHKAGCLNLVDVVED-------VKTSVKN-KVPLVRSLTLN---WVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2015)
Q Consensus 390 L~al~~~~~~~l~~il~~-------l~~~L~~-Knp~vR~~~l~---~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~ 458 (2015)
+.++..+.|+.++..-|. .+..+.. -++..-..++. .|...+..|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 999997633332221111 1122221 11233333333 4444445555544 4888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCccccccccc
Q 000156 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (2015)
Q Consensus 459 ~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (2015)
..|+-.+++|+..+.+.-.. .|+...-.++-.++-..+ |+. ..+-. .-.=.+.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~---------~D~~~-t~~W~~v-- 290 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSE---------NDDLL-TVAWLKV-- 290 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCc---------cchHH-HHHHHHH--
Confidence 99999999999887765543 122222222222221110 000 00000 0000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHH
Q 000156 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (2015)
Q Consensus 539 ~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 618 (2015)
+ .+ +. ... ..+..|-+-..+..++ .-+.+ +..+.-+++
T Consensus 291 --~-~~---------------------~~-------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 291 --L-NE---------------------AH-------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred --H-HH---------------------HH-------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 0 00 00 000 0001111222222222 23344 555566666
Q ss_pred HHHHHHHHHHH-Hhccc-cchHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc
Q 000156 619 LEAISSLRQQV-EAVQN-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (2015)
Q Consensus 619 l~a~e~L~~~v-~~~~~-~~~~~~~-Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD 695 (2015)
+++.......+ +..-. .+..|.. +..+|.. .-..|...+|+++..+.+.|+..+...+-.++-.|.+.=++
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 66554443333 22111 1111222 2222221 22347778888888888888877777777788887774333
Q ss_pred --hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-CC--hhhHHHHHHhc----
Q 000156 696 --IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-LK--LKDLIDFCKDT---- 766 (2015)
Q Consensus 696 --~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-l~--~k~li~~l~~~---- 766 (2015)
.-.+....+|+.+...+.||+.|+..+==.+ ++-.....=.||--++.++-... +. ...++++...+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888899999998776542221 22222223346666666543211 10 12233332211
Q ss_pred -CCCCCch---hHHHHHHHHH-----------------HHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCC-------
Q 000156 767 -GLQSSAA---ATRNATIKLL-----------------GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF------- 818 (2015)
Q Consensus 767 -gL~~sn~---~VR~aA~~ll-----------------~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~------- 818 (2015)
++....- .+++..-++. ..++..+|..+.. =.++.+.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~ 557 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAEN 557 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHH
Confidence 0111111 1122111111 1111112211110 023344444444443333310
Q ss_pred -------------------CCCCCCcccc-----------c------Ccccc-----CCC---CCCCCCC----------
Q 000156 819 -------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG---------- 844 (2015)
Q Consensus 819 -------------------~~~p~p~R~~-----------r------~~~~~-----~s~---~~~~~d~---------- 844 (2015)
..+++..|.. | +.... .+. .++.++.
T Consensus 558 ~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slL 637 (1176)
T KOG1248|consen 558 KEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLL 637 (1176)
T ss_pred HHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHH
Confidence 0011111000 0 00000 000 0000000
Q ss_pred ---------CCCcccccccchHHHHhcCCC-ChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhccccchHHHHH
Q 000156 845 ---------LPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 845 ---------lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
.+...++... .+......+ +-++++.+.+-|..++..- ..........+++..|.+-++++...++.
T Consensus 638 dl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 0000111110 112222333 6778888888888887630 01112223467888899999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHh
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALT 981 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~--~~~---g-------l~~ll~~l~~~L~ 981 (2015)
..|+++..|...++..+..+....+|-++-.+++.+..-|+.+.+||-.+. ... | +..+++.|...+.
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 999999999999998888888899998888889999999999999999888 321 3 3345556666655
Q ss_pred cCCCChhHHHHHHHHHHHHhccCC---CCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 982 DAKLGAEGRKDLFDWLSKQLTGLS---GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 982 ~~k~~p~~R~~~l~~L~~~l~~~~---~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
.+. +..+..-+-.+...+.+.. ....+..++..+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 796 gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 796 GDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 442 3444442333333333332 23345667777888999999999999999999999999998888777555443
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.71 E-value=4e-05 Score=101.54 Aligned_cols=460 Identities=16% Similarity=0.160 Sum_probs=298.6
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
...+.+++-..|+=+.-.+..+.... +.-.--++..|.+=+.+.|..++..|+++++.++. ...++.++|.
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~ 118 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPD 118 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHH
Confidence 34456788888887766666655311 11123467788888889999999999999999872 3457789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
+.+.+.++++.||..|..|+..++......+.. +++.+...+.++++.|+..++..+..+ ..++......+..+...
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHH
Confidence 999999999999999999999999873334455 789999999999999999999998887 34433322456777778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCchHH--HHHHHhccHHHH----HHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000156 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~--~~~l~~Ld~~~~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 523 (2015)
+.+.+.+.+|-++-...+++..+...-... . ..+++.+.+.-. .-+-+++.-
T Consensus 197 L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 197 LCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 888889999999888777776443221111 1 122222221111 000010000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000156 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (2015)
Q Consensus 524 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 603 (2015)
.. ... .+.+ +- ..+-
T Consensus 255 ------------------i~--------------------------------~l~----------~~~~-~~----~~~~ 269 (526)
T PF01602_consen 255 ------------------II--------------------------------KLS----------PSPE-LL----QKAI 269 (526)
T ss_dssp ------------------HH--------------------------------HHS----------SSHH-HH----HHHH
T ss_pred ------------------HH--------------------------------Hhh----------cchH-HH----HhhH
Confidence 00 000 0111 11 1123
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
..+...|.++++..|..+++.|..+.....+........+..+. .|.+..|...+++++..++.. ..+.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVK 338 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchh
Confidence 56778889999999999999998887664111112233333332 366677899999999988864 4566
Q ss_pred HHHHHHHhhhc---chhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh
Q 000156 684 LCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 758 (2015)
Q Consensus 684 ~il~~LveKlg---D~K~r~~a~~~L~~l~e~~~~--~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~ 758 (2015)
.++..+..-+. |...+..+...+..+++.+.+ ++.++.+++.+ ...+..+..+++..+.+++...... -..
T Consensus 339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~ 414 (526)
T PF01602_consen 339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REK 414 (526)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHH
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHH
Confidence 77777777663 556888999999999998764 57788888876 5667788999999999999775432 123
Q ss_pred HHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCC
Q 000156 759 LIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 837 (2015)
Q Consensus 759 li~~l~~~gL~-~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~ 837 (2015)
++..+... +. -.++.++.+++.++|+....... .+ ..+.++..+..
T Consensus 415 ~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l~~-------------------------- 461 (526)
T PF01602_consen 415 ILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSLIE-------------------------- 461 (526)
T ss_dssp HHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHHHH--------------------------
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHHHH--------------------------
Confidence 44444433 44 36788999999999987655543 00 11222222222
Q ss_pred CCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccc--cchHHHHHH
Q 000156 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLVMA 914 (2015)
Q Consensus 838 ~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~--DsN~~V~~~ 914 (2015)
...+.+-.+|...+..+.++... ... ...+++...+..... +.|..|+..
T Consensus 462 -----------------------~~~~~~~~vk~~ilt~~~Kl~~~----~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 462 -----------------------NFIEESPEVKLQILTALAKLFKR----NPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp -----------------------HHTTSHHHHHHHHHHHHHHHHHH----SCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred -----------------------hhccccHHHHHHHHHHHHHHHhh----CCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22233345677778888877752 222 122477777777776 779999999
Q ss_pred HHHHHHHHH
Q 000156 915 TLITLGAVA 923 (2015)
Q Consensus 915 Al~~l~~La 923 (2015)
|...+..+-
T Consensus 515 a~~y~~ll~ 523 (526)
T PF01602_consen 515 AREYLRLLN 523 (526)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 998887654
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=0.00011 Score=97.36 Aligned_cols=501 Identities=17% Similarity=0.189 Sum_probs=279.8
Q ss_pred hhhccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 292 EGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 292 ~~l~s~--kWkeR~eaL~~L~~l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
+.+++. +-.+|++++..|..+. .+.. ...++..+.+.+...+..+...+--.+..+.. .=...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~~ 81 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILII 81 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHHH
Confidence 334455 7778999999887754 3432 22344455556666676665544444433332 1123577899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 447 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~ 447 (2015)
..+.+-+.++++.+|..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+. . ++. ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-L----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-C----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-H----HHHHHH
Confidence 9999999999999999888888877532 33466788888999999999999999999998876433 2 233 79
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000156 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (2015)
Q Consensus 448 p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 527 (2015)
+.+.+++.|.++.|+.+|..++..+ +. .++....++..+- ..+...+.. +.+-.+
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~~----~~L~~~l~~---------~~~~~q---------- 209 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKLI----RILCQLLSD---------PDPWLQ---------- 209 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHHH----HHHHHHHTC---------CSHHHH----------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHHH----HHhhhcccc---------cchHHH----------
Confidence 9999999999999999999999888 21 1111111222211 122222210 000000
Q ss_pred CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHH
Q 000156 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (2015)
Q Consensus 528 ~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~ 607 (2015)
-..-..+..- .....++... ..+-+.+.
T Consensus 210 --------~~il~~l~~~-----------------------------------------~~~~~~~~~~---~~~i~~l~ 237 (526)
T PF01602_consen 210 --------IKILRLLRRY-----------------------------------------APMEPEDADK---NRIIEPLL 237 (526)
T ss_dssp --------HHHHHHHTTS-----------------------------------------TSSSHHHHHH---HHHHHHHH
T ss_pred --------HHHHHHHHhc-----------------------------------------ccCChhhhhH---HHHHHHHH
Confidence 0000000000 0001111100 11224566
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 000156 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 687 (2015)
Q Consensus 608 ~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 687 (2015)
..+.+.++..+.+++..+..+.....-.....+.+.+++. +++..+.-.+|+.+..++...+.... . ..+.-
T Consensus 238 ~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~ 309 (526)
T PF01602_consen 238 NLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLIL 309 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHH
T ss_pred HHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-h-hhhhh
Confidence 7777888888888888777443322111122344555543 33334556677777766654311111 0 11111
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcC
Q 000156 688 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTG 767 (2015)
Q Consensus 688 ~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~g 767 (2015)
..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +...+++.+.++
T Consensus 310 ~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~l- 385 (526)
T PF01602_consen 310 FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLKL- 385 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHHH-
T ss_pred heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHHh-
Confidence 1222223445677777777777777666677777777764444666777777777777766632 223344444443
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCC
Q 000156 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR 847 (2015)
Q Consensus 768 L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lpr 847 (2015)
+...+..|...+
T Consensus 386 l~~~~~~~~~~~-------------------------------------------------------------------- 397 (526)
T PF01602_consen 386 LEISGDYVSNEI-------------------------------------------------------------------- 397 (526)
T ss_dssp HHCTGGGCHCHH--------------------------------------------------------------------
T ss_pred hhhccccccchH--------------------------------------------------------------------
Confidence 333333333322
Q ss_pred cccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcccc-chHHHHHHHHHHHHHHHHHh
Q 000156 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAM 926 (2015)
Q Consensus 848 vdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~D-sN~~V~~~Al~~l~~La~al 926 (2015)
+..+..++.. .+.....++..|...+.+ .+..+...++-++|+.+...
T Consensus 398 --------------------------~~~i~~ll~~-----~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 398 --------------------------INVIRDLLSN-----NPELREKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp --------------------------HHHHHHHHHH-----STTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHhhc-----ChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 2233333321 011112223333333322 23445667777777777666
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000156 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2015)
Q Consensus 927 g~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~----~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2015)
.. .. ....++..+.+.+.+....|+..+..++..+....+-. .+++.+......+..++++|..+..++.
T Consensus 447 ~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 447 EN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp TT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred cc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 54 11 56678888888889888899999999999999887632 4555555555511226888887777664
No 34
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.7e-05 Score=101.65 Aligned_cols=372 Identities=16% Similarity=0.107 Sum_probs=245.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhChh-----HHHHHHHHH
Q 000156 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG-----FIFERLYKI 725 (2015)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~~~-----~Vl~~L~~~ 725 (2015)
.|.+..|...+-+-+..++...++ ......+++.++.-.-|. -+|..|.+.+..+.+.+..+ .+.+.++..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA 324 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Confidence 456666666555555544443222 223345566666666664 48999999999999887766 455555555
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHH--hhhhhccH
Q 000156 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK--GFLADVKP 803 (2015)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~--~~L~~lkp 803 (2015)
.+.++++++.-...+...+...||.+... ..+...+..+ +++.-..+|.++..-...+..+...+-. ...+.+-|
T Consensus 325 -~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 325 -VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred -hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 37899999999999999999999984322 2334444445 7888889999988888887776653211 11233334
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 000156 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (2015)
Q Consensus 804 ~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~ 883 (2015)
.+...+.+.-..+ |+... +...+....+|...-...+.+.++..+.|..-.+|....+.+..+..
T Consensus 402 ~~~~lv~d~~~~v------------r~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~- 466 (759)
T KOG0211|consen 402 EVQVLVLDNALHV------------RSALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE- 466 (759)
T ss_pred HHHHHHhcccchH------------HHHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-
Confidence 4444443321111 11000 00011122334333344466778888999999999998876644433
Q ss_pred ccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000156 884 ANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2015)
Q Consensus 884 a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2015)
.+.-+.... -..+++++..+-.|.++.++...+..+..++.-.|..|.. ..+.+.+..-+-|....+|.+|...+..
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD--EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 222222211 2457788888889999999999999999999999955432 2255666677888999999999999999
Q ss_pred HHHhcCc----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHH
Q 000156 963 WLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1038 (2015)
Q Consensus 963 i~~~~gl----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~ 1038 (2015)
++...|. ..+++.+.....+. +--.|..++.-+....+-.+..-....+++++.....|..++||-++.+.|..
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 9999982 34455555555444 34678888877776555555433345667778888999999999999999988
Q ss_pred HHHHcChhHH
Q 000156 1039 ILRAGGQETI 1048 (2015)
Q Consensus 1039 l~~~~G~~~~ 1048 (2015)
++..+-....
T Consensus 623 i~~~L~~~~~ 632 (759)
T KOG0211|consen 623 ILKLLDESVR 632 (759)
T ss_pred HHhhcchHHH
Confidence 8777766443
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.64 E-value=2.4e-06 Score=118.97 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=169.8
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhC--hhHH
Q 000156 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (2015)
Q Consensus 718 Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (2015)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456666665 799999999999998764 32 3466777777 999999999999999987733222 1223
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHH
Q 000156 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale 875 (2015)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222222211100 0 0235677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000156 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (2015)
Q Consensus 876 ~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~a 955 (2015)
.|..+- . ...|...+.|.+..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 887531 1 134567799999999999999888765321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHH
Q 000156 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (2015)
Q Consensus 956 a~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~ 1035 (2015)
|..+|..+.. ...+.+.+..+|.++ ++.+|..++..|... + ....+.+|..+|.|++++||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999977632 133456688889877 589999999888642 1 13455779999999999999999999
Q ss_pred HHHH
Q 000156 1036 IVEI 1039 (2015)
Q Consensus 1036 L~~l 1039 (2015)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
No 36
>PRK09687 putative lyase; Provisional
Probab=98.63 E-value=2.4e-06 Score=102.64 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=107.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+...+.|++|.+|..++..|..+ . + .+.+..|...|.|.+..|+..|+..|+.+. ...+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~--~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------N--D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------C--C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCHH
Confidence 455667888999999888888532 1 1 567888888889999999999888888761 12346
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2015)
.++.|+..|.|.+..||..|..+|.. ++-...+|.|...|+++ .+|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHHH
Confidence 77888889999999999998888866 45567888888888865 256665555543 222 356666
Q ss_pred HHhhcC-CCChHHHHHHHHHHH
Q 000156 1017 ASIAMT-DKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1017 l~~~L~-D~~~~VR~aA~~~L~ 1037 (2015)
+...++ +.+..||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 777775 888899988887764
No 37
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.63 E-value=0.00085 Score=82.58 Aligned_cols=467 Identities=14% Similarity=0.161 Sum_probs=265.2
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHH-----hh-----------hcch-hhhHhHHHHHHHHhccCc-------HHHHHHHH
Q 000156 332 KLITDVNIAVAVEAIQAIGNLARG-----LR-----------THFS-GSSRFLLPVLLEKLKEKK-------PTVAESLT 387 (2015)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~~-----L~-----------~~f~-~~~~~llp~LL~klkdkk-------~~V~~aa~ 387 (2015)
..++..|-.|...|...-..++.. +- ..|. ..+..++|.||..+-... =++.-++.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 345688888887776666555531 11 1233 225679999999884422 24777888
Q ss_pred HHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000156 388 QTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (2015)
Q Consensus 388 ~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~ 466 (2015)
.||.-+... +-.-+..++..+-..+.+.+|.-|..+.-.++..+..-....+.+++++.+|.+...++|+.--|.+.+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 999877766 1122345667777788899999999999999988887667777888999999999999999999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCC
Q 000156 467 SVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (2015)
Q Consensus 467 ~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (2015)
.|++.+..++.+- ++|- ..|.....+-+....
T Consensus 430 wc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~---------------------------------------------- 461 (858)
T COG5215 430 WCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLM---------------------------------------------- 461 (858)
T ss_pred HHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhh----------------------------------------------
Confidence 9999998887752 2211 011110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHH
Q 000156 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLR 626 (2015)
Q Consensus 547 P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~ 626 (2015)
+-|..........+.+...+ ++ +..+..
T Consensus 462 --------------------------------D~p~~~~ncsw~~~nlv~h~----a~----------------a~~~~~ 489 (858)
T COG5215 462 --------------------------------DCPFRSINCSWRKENLVDHI----AK----------------AVREVE 489 (858)
T ss_pred --------------------------------ccchHHhhhHHHHHhHHHhh----hh----------------hhcccc
Confidence 00000000000000000000 00 000000
Q ss_pred HHHHhccccchHHHHHHHHHhcCC--CCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHH
Q 000156 627 QQVEAVQNLDQSVEILVRLVCMLP--GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704 (2015)
Q Consensus 627 ~~v~~~~~~~~~~~~Lv~~L~~~p--g~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~ 704 (2015)
.........|+..|.+.- ..+|+| .+...+++|..++..+++-.......+...+.+|++.
T Consensus 490 ------S~l~~fY~ai~~~Lv~~t~~~~Ne~n--~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~--------- 552 (858)
T COG5215 490 ------SFLAKFYLAILNALVKGTELALNESN--LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE--------- 552 (858)
T ss_pred ------chhHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH---------
Confidence 001111222333332111 145665 4566789999998877653333344444445555443
Q ss_pred HHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhh-HHHHHHhcCCCCCchhH-HHHHHHH
Q 000156 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAAT-RNATIKL 782 (2015)
Q Consensus 705 ~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~-li~~l~~~gL~~sn~~V-R~aA~~l 782 (2015)
++......+..+ .+ .---.+++--+..|..+|..++.+.-++.+ ++.++... ++.+++.+ -.-....
T Consensus 553 ~isv~~q~l~~e---D~-------~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~~dV~~a 621 (858)
T COG5215 553 CISVLGQILATE---DQ-------LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAFGDVYTA 621 (858)
T ss_pred HHHHhhhhhhhH---HH-------HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhhhHHHHH
Confidence 222211111110 00 001234556677888899999986545554 77777666 77776543 2233344
Q ss_pred HHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc
Q 000156 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (2015)
Q Consensus 783 l~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l 862 (2015)
++.|...+|..|..|+..+.|-+.+ .+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl~~-----------------------------------------------------al 648 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYLTR-----------------------------------------------------AL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH-----------------------------------------------------Hh
Confidence 4444444444444444444443333 33
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ 940 (2015)
...+..+-..++-.+..+.+.-+..+.+.- ..++..|.+.|+.+ ...+.-..|.+++.||.++|.+|.+|+..++--
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L 727 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMML 727 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444566666666654334444432 56788888888654 456777889999999999999999999888766
Q ss_pred HHHHhC-----C------CcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHH
Q 000156 941 ILKCLG-----D------NKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTAL 980 (2015)
Q Consensus 941 ll~~L~-----D------~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L 980 (2015)
+...-. | =...++.....+...+..... ++.++|++...+
T Consensus 728 ~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif 780 (858)
T COG5215 728 FQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIF 780 (858)
T ss_pred HHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHH
Confidence 654332 1 112455555566666666655 778888765443
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.60 E-value=0.00075 Score=90.65 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=64.5
Q ss_pred HHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 371 LLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 371 LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
|-+.|...+.. .++++...+..+.. | .....++++++..+.+++..+|+-+..++.......+.. .-..+..
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINt 109 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNT 109 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHH
Confidence 33444443333 34444444443332 2 456788999999999999999999988888765533321 2345788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 000156 450 CMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 450 l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
+.+-+.|++|-||.-|.++|+.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHc
Confidence 8999999999999999988854
No 39
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.016 Score=78.08 Aligned_cols=758 Identities=13% Similarity=0.093 Sum_probs=383.3
Q ss_pred hHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCc
Q 000156 128 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 202 (2015)
Q Consensus 128 ~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~ 202 (2015)
..+..|.+.+. +-|-.++-.++.||..+|+..+.+. .+.+..+-.+..+.-|..+.||.+|...+..+-. |+.
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~--~p~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLK--GPP 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHc--CCC
Confidence 34555555555 8888999999999999888877643 4567788888899999999999999888777653 221
Q ss_pred hhhHHHhhhChHH---HHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000156 203 PVKTILFEKMRDT---MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279 (2015)
Q Consensus 203 ~l~~~l~~~Lk~~---q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~v 279 (2015)
+.+ ....|+ ..++..+.+++.-++..-+-.+|+-.--+ |.+.-. |.
T Consensus 171 -~~~---~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~-p~ 219 (1176)
T KOG1248|consen 171 -FAP---DAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTF-PR 219 (1176)
T ss_pred -CCc---cccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccC-CH
Confidence 100 111222 13344445544322111111111110000 000000 11
Q ss_pred cccccCcchhhhhhhccCChHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcccCHHHHHHH-HHHHHH----H
Q 000156 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGN----L 352 (2015)
Q Consensus 280 dIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~-~~k-i~~~~y~~l~~~L~k~l~D~N~~V~~~A-~~~l~~----L 352 (2015)
.++..+. +.+..-.....--.+-++++.+..+-+ .+. +...-+..++.+|.++--+.|-.....+ +.++.. +
T Consensus 220 ~li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~l 298 (1176)
T KOG1248|consen 220 PLIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDIL 298 (1176)
T ss_pred HHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHH
Confidence 1122233 344444566777788889999988763 333 2223345555555554433332222222 222222 1
Q ss_pred HHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-HhHHHH-HHHHhhcCChHHHHHHHHHHHHH
Q 000156 353 ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDVVED-VKTSVKNKVPLVRSLTLNWVTFC 430 (2015)
Q Consensus 353 a~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l-~~il~~-l~~~L~~Knp~vR~~~l~~L~~~ 430 (2015)
+..-...--+....+++.++..+-.....+.+++.+++..+... |++. +.+-.. +...|.-|-..+=..+++.+..+
T Consensus 299 a~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~ 377 (1176)
T KOG1248|consen 299 ATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSAL 377 (1176)
T ss_pred HHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 21111111245667788888877788899999999999999987 6662 222233 33455667777778899999999
Q ss_pred HHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhcCCCCCCCC
Q 000156 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATG 510 (2015)
Q Consensus 431 l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~ 510 (2015)
++.+++-. .+++-..+..|...=.+.+-.-+..--+|+|...+.+|.+.+-..++ |+- ..+.
T Consensus 378 fek~G~~s-~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lp---------Lnl---~~~s----- 439 (1176)
T KOG1248|consen 378 FEKCGELS-GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILP---------LNL---HAES----- 439 (1176)
T ss_pred HHHhhhhc-CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcc---------hhc---cccc-----
Confidence 98887632 12222222233322233444444466778888888888653322211 000 0000
Q ss_pred CCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 000156 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (2015)
Q Consensus 511 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s 590 (2015)
. . .+ + +..=|.- +- . +....++
T Consensus 440 ~-----~------------~~----R------sWLLPvL-----------R~-----~---------------i~~A~La 461 (1176)
T KOG1248|consen 440 L-----S------------FT----R------SWLLPVL-----------RD-----Y---------------IIGASLA 461 (1176)
T ss_pred c-----c------------cc----h------hHhHHHH-----------HH-----h---------------hccCcHH
Confidence 0 0 00 0 0000000 00 0 0000000
Q ss_pred --HHHHHHHhhccCcHHHHhhhccCCHHHHHH-----HHHHHHH----HHHhccc--cc--hHHHHHHHHHhcCCCCccc
Q 000156 591 --LEEIESRLGSLIPADTVGQLKSAVWKERLE-----AISSLRQ----QVEAVQN--LD--QSVEILVRLVCMLPGWSEK 655 (2015)
Q Consensus 591 --~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~-----a~e~L~~----~v~~~~~--~~--~~~~~Lv~~L~~~pg~~Ds 655 (2015)
.+.+- .+...|.++--+...+ -++.|.. .+.++.+ .+ ...-.+.+.+... + ..
T Consensus 462 ~F~~~iv---------pla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~a--l-~~ 529 (1176)
T KOG1248|consen 462 FFTEYIV---------PLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAA--L-LK 529 (1176)
T ss_pred HHHHHHH---------HHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHH--H-hc
Confidence 01111 1112222211111111 1111111 1111111 00 0011111111100 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHhhhcch-----h---hhHHHHHHHH-HHHhhhChhH
Q 000156 656 NVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAVGPGF 717 (2015)
Q Consensus 656 N~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgD~-----K---~r~~a~~~L~-~l~e~~~~~~ 717 (2015)
+.-.....+..|..+++.+. .+..+.+...+|.++..-+.. + .+..-.+... .+.+..+.+
T Consensus 530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d- 608 (1176)
T KOG1248|consen 530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD- 608 (1176)
T ss_pred chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH-
Confidence 11233445556666666541 122344556677776554432 1 1222222222 233333322
Q ss_pred HHHHHHHHhh----h---CCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 000156 718 IFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV 790 (2015)
Q Consensus 718 Vl~~L~~~l~----~---~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~ 790 (2015)
|...+...+. . .+.+......|+.+..+..-... -++..+....... ..++++.|+.-+..+|.++...
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l~~~- 684 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEELSSS- 684 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHHhcC-
Confidence 3333333321 1 12233333333333333321111 1233333344444 5566888999999988888755
Q ss_pred ChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHH
Q 000156 791 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870 (2015)
Q Consensus 791 G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R 870 (2015)
+....+..+....+.+.+-+- +.+..--.|
T Consensus 685 -~s~~~~~~q~i~~I~n~L~ds-------------------------------------------------~qs~~~~~~ 714 (1176)
T KOG1248|consen 685 -PSGEGLVEQRIDDIFNSLLDS-------------------------------------------------FQSSSSPAQ 714 (1176)
T ss_pred -CchhhHHHHHHHHHHHHHHHH-------------------------------------------------HhccchHHH
Confidence 222222222222222222222 222223345
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH--H---hChhh-HHhhhHHHHHHHHH
Q 000156 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS--A---MGPAV-EKSSKGVLSDILKC 944 (2015)
Q Consensus 871 ~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~--a---lg~~f-~~~~~~llp~ll~~ 944 (2015)
...+..|..|+...+.....-....|..++... +|-|..-++.|..+|-.|+. . .|.+= ...+..+++.|...
T Consensus 715 ~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 715 ASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 556666666665322111111112233333333 88899999999988888872 1 12221 23556677777766
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCChhhhH
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLL 1014 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~~~~ll 1014 (2015)
+......++.+-+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .+....++
T Consensus 794 l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL 871 (1176)
T KOG1248|consen 794 LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELL 871 (1176)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH
Confidence 766677776666788888876542 455666777777765 589999999999988887765 24555566
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000156 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2015)
Q Consensus 1015 ~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2015)
+.++..+.|....+|.+....|..+++.+|.+.+..++. .....+...|.|.
T Consensus 872 ~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 872 PSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHHH
Confidence 668888899999999999999999999999999888764 4445555555553
No 40
>PRK09687 putative lyase; Provisional
Probab=98.36 E-value=2.4e-05 Score=94.19 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=117.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~l 941 (2015)
+.|++|.+|..|+..|+.+... ...+ ...++..|...+.|.+..|+..++..++.+. ....++.|
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~---~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKK---NPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccc---cccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 5888999999999999877431 1111 2456777888899999999999998886542 13578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000156 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2015)
Q Consensus 942 l~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2015)
+..|.|....||..|..+|+.+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 334457888899999877 689999999998752 1256788899999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 000156 1022 TDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1022 ~D~~~~VR~aA~~~L~~l 1039 (2015)
+|.+ ||..|..+|+.+
T Consensus 233 ~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 233 KKGT--VGDLIIEAAGEL 248 (280)
T ss_pred cCCc--hHHHHHHHHHhc
Confidence 9866 788888787765
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=98.33 E-value=0.00052 Score=92.10 Aligned_cols=358 Identities=12% Similarity=0.121 Sum_probs=227.5
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHHH
Q 000156 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (2015)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 684 (2015)
++.+.|.+.+-..|.+|+..+...+..+.+.....-.+++. +.-.|..+...+.-.+..+++. ....+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~------~~S~d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKL------APSTDLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHH------hCCCCHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 45677788888899999999987776544332222223333 2344666666665555554432 2334556
Q ss_pred HHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHH
Q 000156 685 CLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (2015)
Q Consensus 685 il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~ 762 (2015)
+++.+..-+.| +-+|..|..+|..+....-.++++..+.+.+ .+++|-||..++.++.++..... +.+....+++.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHH
Confidence 67777776766 3578888777776554433445555556664 78999999999999999876544 22333457788
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCC
Q 000156 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (2015)
Q Consensus 763 l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~ 842 (2015)
+.++ +.++|+.|..+|+.+|.++...-+..+. -..+.+.
T Consensus 184 L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~l~----l~~~~~~------------------------------------ 222 (746)
T PTZ00429 184 LVEL-LNDNNPVVASNAAAIVCEVNDYGSEKIE----SSNEWVN------------------------------------ 222 (746)
T ss_pred HHHH-hcCCCccHHHHHHHHHHHHHHhCchhhH----HHHHHHH------------------------------------
Confidence 8888 9999999999999999988654432221 0111111
Q ss_pred CCCCCcccccccchHHHHhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHH
Q 000156 843 DGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (2015)
Q Consensus 843 d~lprvdIs~~L~~~ll~~l~d-~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~ 921 (2015)
.++..+.+ ..|- +.. +-+++....+ -......+++..+..+|.-+|..|+..|++++-.
T Consensus 223 --------------~Ll~~L~e~~EW~-Qi~----IL~lL~~y~P-~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 223 --------------RLVYHLPECNEWG-QLY----ILELLAAQRP-SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred --------------HHHHHhhcCChHH-HHH----HHHHHHhcCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12222222 1342 111 2222221111 0111235678888888988999999999999888
Q ss_pred HHHHhChhh-HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHH---HhcCCCChhHHHHHHHHH
Q 000156 922 VASAMGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA---LTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 922 La~alg~~f-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~---L~~~k~~p~~R~~~l~~L 997 (2015)
+...+.+.. ......+.++++.. ..+.+.++-.+...|..++...+ ..+.+.+-.. ..++ ..+|...++.|
T Consensus 283 l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~~Dp---~yIK~~KLeIL 357 (746)
T PTZ00429 283 LASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRYSDP---PFVKLEKLRLL 357 (746)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcccCCc---HHHHHHHHHHH
Confidence 876654332 33344455666655 45678899999999988887653 2233332222 2233 46788888888
Q ss_pred HHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..... ...+..++.-|.....|.+.++|..+..+++.+...+.
T Consensus 358 ~~Lan----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 358 LKLVT----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHcC----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 76543 33567777788888899999999999999998876654
No 42
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=9.3e-06 Score=94.03 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=145.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
..+..|++++|....+|+..+..+.. -++......+.+++-++.+-++..+..|...||-+++.|+..++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998876 34444444568888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC----CChhh
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1012 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~----~~~~~ 1012 (2015)
++..|+..-.+.|..||+.|..+|.+++.+.....+++.|...+++. ++..|.....-........+.. ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 5666655443333333333211 12234
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000156 1013 LLKPASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1013 ll~pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
++..+-.-+.|+-+.+|++|...+...
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhH
Confidence 445566678899999999988666543
No 43
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.24 Score=66.65 Aligned_cols=596 Identities=15% Similarity=0.111 Sum_probs=302.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000156 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 400 (2015)
Q Consensus 325 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk-~~V~~aa~~aL~al~~~~---~~~ 400 (2015)
.++..|...++|....|+..|++-++.++..+... .+..++..+++.|..-. ...--.+.-+|..+...| ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 44556666778999999999999999999988743 46677777777664433 334445556666665543 234
Q ss_pred hHhHHHHHHHHhh-------c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHH
Q 000156 401 LVDVVEDVKTSVK-------N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 401 l~~il~~l~~~L~-------~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
+++++|.|..++. + .--.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|..-++|.||..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5688888887773 2 335788777766655555556666666666666655 567899999999999998875
Q ss_pred HHHHhCchHH-HHHHHhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 000156 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (2015)
Q Consensus 472 l~~~~Ge~~~-~~~l~~Ld~~~~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (2015)
.....|+-+. ..++...|-..-.....++
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy-------------------------------------------------- 527 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCY-------------------------------------------------- 527 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHH--------------------------------------------------
Confidence 5555444310 0111111110000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHhhhccCCHHHHHHHHHHHHHHHH
Q 000156 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (2015)
Q Consensus 551 ~~~~~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~ 630 (2015)
.+ -..+..+.+.....++.+.+..++.|=+-+.|..|...|.++..
T Consensus 528 -------------------------------~~---l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 528 -------------------------------LD---LCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred -------------------------------HH---HhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 00 00112233333334555556666888888899999999988543
Q ss_pred hccccchHHHHHHHHHhcCCCCcccHHH--HHHHHHHHHHHHHH---HcCCCchhHHHH---HHHHHHhhhcchhhhHHH
Q 000156 631 AVQNLDQSVEILVRLVCMLPGWSEKNVQ--VQQQVIEVINYLAA---TATKFPKKCVVL---CLLGISERVADIKTRAHA 702 (2015)
Q Consensus 631 ~~~~~~~~~~~Lv~~L~~~pg~~DsN~q--V~~~~Le~l~~l~~---~~~~~~~~~~~~---il~~LveKlgD~K~r~~a 702 (2015)
-..+. .....+++++... .-.|-+.. +...+=+++..+-. ....+...-+.. +++.+.++......+..-
T Consensus 574 ~~pk~-~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred hhHHh-hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 31110 0012233333211 01222211 11111122221111 011111222222 456666655554433344
Q ss_pred HHHHHHHHhhhC-------hhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCC
Q 000156 703 MKCLTTFSEAVG-------PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSS 771 (2015)
Q Consensus 703 ~~~L~~l~e~~~-------~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~s 771 (2015)
..+...+.|.++ ++++.+..-..+ ..+.| .+|.++...+++++..|-...- ...++|......+-...
T Consensus 652 r~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~ 730 (1133)
T KOG1943|consen 652 RQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS 730 (1133)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch
Confidence 445555555443 234444322222 22344 6788888888888887643211 11134444333213444
Q ss_pred chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccc
Q 000156 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDIS 851 (2015)
Q Consensus 772 n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs 851 (2015)
+..+|..-+..++.+-..+ +... .++.+ .
T Consensus 731 ~~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c------------------------------------- 759 (1133)
T KOG1943|consen 731 EERIRRGLILALGVLPSEL---IHRH-------LQEKL----C------------------------------------- 759 (1133)
T ss_pred HHHHHHHHHHHHccCcHHh---hchH-------HHHHH----H-------------------------------------
Confidence 6667776655554442111 1110 01111 0
Q ss_pred cccchHHHHhc-CCCChH-HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--------ccchHHHHHHHHHHHHH
Q 000156 852 GKFTPTLVKSL-ESPDWK-VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--------YDSNKNLVMATLITLGA 921 (2015)
Q Consensus 852 ~~L~~~ll~~l-~d~~Wk-~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--------~DsN~~V~~~Al~~l~~ 921 (2015)
..++... +|. |. .|...+..+..++........+..+.+++..|.+.| +|.-.-|+.+|++.+..
T Consensus 760 ----~~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 760 ----KLVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred ----HHHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 1111111 122 53 377777777777653222233334455555555544 44556689999999988
Q ss_pred HHHHhC-h-hhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHH---HHHHh-cCCCChhHHHHHH
Q 000156 922 VASAMG-P-AVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV---TTALT-DAKLGAEGRKDLF 994 (2015)
Q Consensus 922 La~alg-~-~f~~~-~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l---~~~L~-~~k~~p~~R~~~l 994 (2015)
+..-+. + -++.+ +..++..+++...|+-...|+.|..|+..++.+-.--..+|.+ .+.+- +...++..=...+
T Consensus 835 ~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~ 914 (1133)
T KOG1943|consen 835 LLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTL 914 (1133)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchh
Confidence 876653 3 34443 5556667888888888888999999999988772111222221 11111 0000000000011
Q ss_pred HHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000156 995 DWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (2015)
Q Consensus 995 ~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~ 1071 (2015)
..+...+. ..+.+ .+.+..+...+..-....++.|.+++..+++ ++..+.+-.+..+..-...+.+.+-..+
T Consensus 915 f~L~~~Ll---~~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 915 FPLNSSLL---ELPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred hhHHHHHH---hhHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 11110110 01122 2333334444444445566777777777776 5544454455555555555665554433
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.1 Score=67.57 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHH
Q 000156 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 461 (2015)
Q Consensus 382 V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~V 461 (2015)
.++|....+.-|+ + ......++|++.....+||+.||.-.--+|.+..+..+.-.+. =+..+.+.|.|+|+.+
T Consensus 52 KleAmKRIia~iA-~-G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~Li 124 (968)
T KOG1060|consen 52 KLEAMKRIIALIA-K-GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQLI 124 (968)
T ss_pred HHHHHHHHHHHHh-c-CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHHH
Confidence 4555544444444 4 2567899999999999999999999999999988765432221 1467889999999999
Q ss_pred HHHHHHHHHHH
Q 000156 462 RDAAFSVLAAI 472 (2015)
Q Consensus 462 R~aA~~al~~l 472 (2015)
|.-|..+|..+
T Consensus 125 RasALRvlSsI 135 (968)
T KOG1060|consen 125 RASALRVLSSI 135 (968)
T ss_pred HHHHHHHHHhc
Confidence 99999988644
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.56 E-value=0.12 Score=67.96 Aligned_cols=396 Identities=14% Similarity=0.144 Sum_probs=233.1
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhc
Q 000156 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (2015)
Q Consensus 722 L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 801 (2015)
++..+ +..+......++..|..++..+....+ ...+.+++... |.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~g-L~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQRG-LTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344667777888888888876654433 45677888874 9999999999998876544322111000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHH
Q 000156 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (2015)
Q Consensus 802 kp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll 881 (2015)
-+ . ...+.+.++..+.+.+-.+.+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------V----DNELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------c----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 0 0113456778889999999999999999987
Q ss_pred HhccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHH
Q 000156 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 958 (2015)
Q Consensus 882 ~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~~L~D~k~~Vr~aa~~ 958 (2015)
... ..+. ..| .++...|...+...|..++..++.++..++..-...+ .++.. +++.+++.|.+..-.++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1110 111 2337777777777778888888888777765443333 44444 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhccCCC--CC----ChhhhHHHHHhhcCCCC
Q 000156 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FP----DAAHLLKPASIAMTDKS 1025 (2015)
Q Consensus 959 aL~~i~~~~g-l-----~~ll~~l~~~L~~~k~~p-~~R~~~l~~L~~~l~~~~~--~~----~~~~ll~pl~~~L~D~~ 1025 (2015)
.+..++..-. . ..+++.|...+.+.+.+| ....-+.+.+ +.+..... .. .+..++..+..+++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999987432 1 235666777776544345 2222222222 12222111 11 22444445667788999
Q ss_pred hHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000156 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (2015)
Q Consensus 1026 ~~VR~aA~~~L~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1104 (2015)
...|..|..+++.+.... |...+ ..+-.+.-+..+..+....+.. +
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~-----~------------------------- 350 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG-----S------------------------- 350 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-----c-------------------------
Confidence 999999999999876433 33333 1122222222222222111100 0
Q ss_pred cCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhh-hhhcc-c--cccCCChhHHHHHHHHHHhhhhH---H-HH
Q 000156 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (2015)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~f~~p~~e~ve~L~~q~~~~~~~---~-l~ 1176 (2015)
-+-|.+ +..+. + ...+...+++-.+...+...++. . ++
T Consensus 351 ----------------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 351 ----------------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 000000 00000 0 00111223332333333333322 1 44
Q ss_pred HhhcccCHHH-HHHHHHHHHHhcCcCh-hhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHH
Q 000156 1177 RRLLSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (2015)
Q Consensus 1177 ~~lf~~D~k~-~~~al~~L~~~l~~~~-~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (2015)
-.+...+|-+ |++|+..|...+.+.- ...+.+.-=++.|++-|-.|++..+...-.+++..+.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 4445678765 8999999998877642 22344455689999999999999999999999998765544
No 46
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.56 E-value=0.0061 Score=74.58 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=139.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcC---CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAST---KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~---~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 363 (2015)
++.+.+.+++=+.|.++|..+..++.. +.+....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 566778889999999999999886632 223335678899999999984444667789999999999887 444566
Q ss_pred hHhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHh--h----------cCChHHHHHH
Q 000156 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSV--K----------NKVPLVRSLT 423 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~--~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~L--~----------~Knp~vR~~~ 423 (2015)
...+.|.|..-+.|... .+|.++..||..+.-.++...+. +++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 77888888888887643 46667766776544332333332 344333221 1 1236788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
+.--+.++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8777777877777667777888999999999999999999999999999988764
No 47
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.52 E-value=0.0043 Score=82.81 Aligned_cols=301 Identities=14% Similarity=0.201 Sum_probs=196.3
Q ss_pred HHHHhhhcc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh--
Q 000156 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK-- 680 (2015)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~-- 680 (2015)
.-+..++++ +.-..|++|++.|...-.-.+.. ...+-++.++.. -|.|+..+|+..+++.|..++..-.++...
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333444443 34567889998887665443321 235666777654 489999999999999999988765555432
Q ss_pred --HHHHHHHHHHhhhcch---hhhHHHHHHHHHHHhhhChhHHHHHHHH--HhhhCCChh----HH-HHHHHHHHHHHHH
Q 000156 681 --CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVED 748 (2015)
Q Consensus 681 --~~~~il~~LveKlgD~---K~r~~a~~~L~~l~e~~~~~~Vl~~L~~--~l~~~KnpK----v~-~~~l~~L~~li~~ 748 (2015)
..+.++|.|-.-+.|. .+|-.-..+|-.+|+...-=..+.+.+. ++.+..|.. -. ..-++.|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-----
Confidence 2356777777666662 3566666666666653210001111111 111111111 00 00011111
Q ss_pred hCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000156 749 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (2015)
Q Consensus 749 fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~ 828 (2015)
..+-+.+..+ +.++.+.||.+-.+-++.|+.++|.. +
T Consensus 577 --------~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k----------- 613 (1431)
T KOG1240|consen 577 --------HTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K----------- 613 (1431)
T ss_pred --------HHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c-----------
Confidence 1233345567 88888999999999999999988831 0
Q ss_pred cCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHHHHhccccc
Q 000156 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGGLRGRLYDS 907 (2015)
Q Consensus 829 r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~-eL~~~L~~rL~Ds 907 (2015)
+ + |+ |.+.++.-+.|++|.-|-.-.+.|-.+. -.+.+.... -|++.|.+-|.|.
T Consensus 614 -s-----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 614 -S-----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred -c-----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCc
Confidence 0 1 11 5678888999999999998877776554 244443223 3677788899999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000156 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 981 (2015)
Q Consensus 908 N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl----~~ll~~l~~~L~ 981 (2015)
...|+..||.++..|++. |--=++++..++..++-.|...+..||.++...+-++.++++- -.++|.|-+.|.
T Consensus 669 EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999988854 2222468888999999999999999999999999999988862 345666666665
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.41 E-value=0.0095 Score=79.70 Aligned_cols=275 Identities=15% Similarity=0.080 Sum_probs=181.7
Q ss_pred hhhHHHHHHHHHHHhhhChhHHHHHHHHHh---hhCCChhHHHHHHHHHHHHHHHh---CCCC--CChhhHHHHHHhcCC
Q 000156 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVSH--LKLKDLIDFCKDTGL 768 (2015)
Q Consensus 697 K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l---~~~KnpKv~~~~l~~L~~li~~f---G~~~--l~~k~li~~l~~~gL 768 (2015)
-.|-.|.+.|..++...+-+..+++++++. +.+..++||..++..|++++.-. .... +-+.-+++.+..+ +
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-L 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-h
Confidence 357778888888888777666666666643 46788999999999999998643 2221 1235577777777 7
Q ss_pred CC-CchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCC---CCCCCCcccccCccccCCCCCCCCCC
Q 000156 769 QS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDG 844 (2015)
Q Consensus 769 ~~-sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~---~~~p~p~R~~r~~~~~~s~~~~~~d~ 844 (2015)
.+ ++..||-+-..+|..|.... ..|++ .-++.... ..+-..+.+ .+ ..+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~--~~--------~~~-- 569 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP--EQ--------NYN-- 569 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc--cc--------ccc--
Confidence 77 66779999999988886432 12221 11110000 000000000 00 000
Q ss_pred CCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 000156 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 845 lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
....++...+...+...+.|.+--+|..-|+.|..++. --.+.+.+ .-|+..|..-|+|..+.++..-.+.|..++-
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~-FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV-FFGKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-Hhhhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence 00111111122234455788888889888888877774 11233333 3477888889999999999998888887777
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSK 999 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~ 999 (2015)
-.|.. ..-+.++|-+.+.|.|..+.|...|..|+..+++.-- +..++..+.+.|-++ |.-+|.+++.++..
T Consensus 647 ~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 647 FVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAA 722 (1431)
T ss_pred EEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHH
Confidence 77765 2234578999999999999999999999999997643 345666777888888 57899999999988
Q ss_pred HhccCCC
Q 000156 1000 QLTGLSG 1006 (2015)
Q Consensus 1000 ~l~~~~~ 1006 (2015)
....+..
T Consensus 723 ~~~~ls~ 729 (1431)
T KOG1240|consen 723 IARQLSA 729 (1431)
T ss_pred HHhhhhh
Confidence 7776654
No 49
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.037 Score=70.19 Aligned_cols=336 Identities=13% Similarity=0.092 Sum_probs=160.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhh-----hChhHHHHHHHHH
Q 000156 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEA-----VGPGFIFERLYKI 725 (2015)
Q Consensus 653 ~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~-----~~~~~Vl~~L~~~ 725 (2015)
.+.+.+|+...++.+............ ....+...-.-...+ ..++-.+......++-. ...+.++..+...
T Consensus 128 ~e~~~~vLa~~~~~l~~~g~~~~~~~~-~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~ 206 (823)
T KOG2259|consen 128 AECSDHVLAQYLDNLLAIGCPVCEEDI-YILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYL 206 (823)
T ss_pred ccchhHHHHHHHHHHHHhccCCCchhh-HHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHH
Confidence 577888888888877655543211110 001111111111111 12233333322222211 1133445544444
Q ss_pred hhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHH
Q 000156 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPAL 805 (2015)
Q Consensus 726 l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~l 805 (2015)
.....++||..+++.|-++-+.|... +.+-....++ +.|.+..||.+|++++...-.........+-+ -
T Consensus 207 -~~~~D~~Vrt~A~eglL~L~eg~kL~----~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~-----e 275 (823)
T KOG2259|consen 207 -EHDQDFRVRTHAVEGLLALSEGFKLS----KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLERESE-----E 275 (823)
T ss_pred -hcCCCcchHHHHHHHHHhhccccccc----HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccchhh-----h
Confidence 47789999999999988777633221 3455666777 99999999999999987665444211111111 1
Q ss_pred HHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-------ChHHHHHHHHHHH
Q 000156 806 LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-------DWKVRLESIEAVN 878 (2015)
Q Consensus 806 l~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-------~Wk~R~eale~L~ 878 (2015)
.+..++-|.++..-.... .=.+|....+ .+ ....+...+++.+.-|+ -|+.-.+.-+.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~-sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDR-SLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred hhhHHHHHHHHHHHHhcC-ceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence 223344444332100000 0011111100 00 00111122332221111 2332222211111
Q ss_pred HHHH-hccccCC---CC---Ch-------hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 879 KILE-EANKRIQ---PA---GT-------GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 879 ~ll~-~a~~~I~---~~---~~-------~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
.=-+ ..+++.. |+ +- .--..+|..-|.|.=-.|+..|...+..|+..- ++| ...-+--++..
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~F---A~~aldfLvDM 418 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGF---AVRALDFLVDM 418 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCc---HHHHHHHHHHH
Confidence 0000 0001110 00 00 011355666667777777777777777776432 333 33455566677
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2015)
|+|--..||--|+.+|..+..++.+ +..++.+...|.+. ++++|.++.+.|.. ........+...+..++++|
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHh
Confidence 7777778888888888887777665 44677777777765 46777777766642 22222223333344455555
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.28 E-value=0.25 Score=65.07 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=111.6
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCC----CC-CCChHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHhhhcchhh
Q 000156 291 WEGVKATKWSERKDAVAELTKLASTKR----IA-PGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGS 363 (2015)
Q Consensus 291 ~~~l~s~kWkeR~eaL~~L~~l~~~~k----i~-~~~y~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~ 363 (2015)
...+.+.+--.|..+++.|..++..+. +. .+-+..|+..|...-.|+ +....-..++..+.++..-...+-..
T Consensus 208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~ 287 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL 287 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH
Confidence 333455555567777777777764322 11 122334444444433354 44444455677777776522333333
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC--------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000156 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~--------~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 433 (2015)
.+.++..++..+....+..+..|.+|+..+..+ |. ..+..++..+.....+....+|..+++.++.++..
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 456666667777778888999999999888654 10 01122334444444556678999999999999765
Q ss_pred cCh---hHHHHhh---------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 434 SSK---AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 434 ~~~---~~l~~~l---------~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
... ..+.... +.....++..+.-+.|++|-+|...+.++..+
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 432 1111111 11111788888999999999999999988755
No 51
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.055 Score=68.84 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=125.2
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~k---i~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (2015)
....++.+.+-..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-+|..+|.|-...-..++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45566778888889999999999885333 322112246667777776 88899999999999999998765544333
Q ss_pred -HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------HHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000156 365 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 365 -~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~------il~~l~~~L~~Knp-~vR~~~l~~L~~~l~~~~~ 436 (2015)
...+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ .....+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 36788899999999999999999999999876 333333 34566666665554 3333444444444444323
Q ss_pred hHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 437 ~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
..-...+..++|+|..++.+.|++|..-|+-++
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222245688999999999999999975444444
No 52
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=1.8 Score=58.88 Aligned_cols=374 Identities=17% Similarity=0.122 Sum_probs=194.2
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhc-cCCCC
Q 000156 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT-GLSGF 1007 (2015)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~-~~~~~ 1007 (2015)
.+++.++-.++..+.|+...||=+|...+..+...++ .+.++..+.+.+.-.. .+..=.+.+-.|++... .+-..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e-~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE-DDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHhcCCcch
Confidence 5778899999999999999999999999999999987 2555665555433110 12222456666665322 11112
Q ss_pred CChhhhHHHHHhhc--CCC------ChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCC-CCCC
Q 000156 1008 PDAAHLLKPASIAM--TDK------SSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ-VSMG 1078 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L--~D~------~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~-~~~~ 1078 (2015)
.-+.++++.|.+.| +++ -..||.+|...+++|.+..-...|.+++.+|-+.-. +.+..++.-.-- ++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDrevncRRAA-- 491 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDREVNCRRAA-- 491 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCchhhHhHHH--
Confidence 22334444466655 332 357999999999999999999888887766644321 222222210000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhh-hhhcccCCCChHHHhhhhhccccccCCCh
Q 000156 1079 PTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS-QALLNVKDSNKEDRERMVVRRFKFEDPRI 1157 (2015)
Q Consensus 1079 ~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~R~~~~~~k~~f~~p~~ 1157 (2015)
.++ --.-+++.+ ..| .+.+.-+ .-.+.+.+-.+--+ .+ .
T Consensus 492 ---sAA------lqE~VGR~~-------------n~p------~Gi~Lis~~dy~sV~~rsNcy~----~l--------~ 531 (1133)
T KOG1943|consen 492 ---SAA------LQENVGRQG-------------NFP------HGISLISTIDYFSVTNRSNCYL----DL--------C 531 (1133)
T ss_pred ---HHH------HHHHhccCC-------------CCC------CchhhhhhcchhhhhhhhhHHH----HH--------h
Confidence 000 000011111 010 0000000 00011110000000 00 0
Q ss_pred hHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHH-HHHHHHHHHHHHhhcCcchHHHHHHHhhHH
Q 000156 1158 EQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFLP 1236 (2015)
Q Consensus 1158 e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i-~~lDlllk~~~lr~~dtN~~vl~k~Le~l~ 1236 (2015)
..+++...-...+|..-+...++|=|-+-|-.+-..|.+.-...++.+. -++--+++++...=.+.-.-+...+=+++.
T Consensus 532 ~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 532 VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 1111222222345667777778888888777766677764333334333 234444554311111111123333333333
Q ss_pred HHHHHHHhcC--C-CCCHHHHHh---hhhHHHHhhcCCh--HHHHHHHHHHHHHHhhccCc-------cccHHHHHhhhc
Q 000156 1237 ELFDTLRDEG--Y-SLTESEAAV---FLPCLVEKSGHNI--EKVREKMRELTKQIVNFYSA-------TKTLPYILEGLR 1301 (2015)
Q Consensus 1237 ~l~~~l~~~~--y-~l~~~Ea~~---~lP~L~~K~Gd~k--~~vr~~v~~il~~i~~vy~~-------skvf~~l~~gl~ 1301 (2015)
.+.... + .+.+++... ++|.+..+-=..+ +.+|..+-..++++...-+. ++.-..|.+.+.
T Consensus 612 ----~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~ 687 (1133)
T KOG1943|consen 612 ----ALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLT 687 (1133)
T ss_pred ----HhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhc
Confidence 233332 2 255666666 4888877764543 78888888888777654332 223333445554
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCcccccchH--HHHHHhhccCChHHHHHHHHHH
Q 000156 1302 SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAERDGEIRKAALNTL 1355 (2015)
Q Consensus 1302 sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l--~~ia~~i~drd~~VR~AAl~~l 1355 (2015)
..| -.|.+....++.++..|-+...+..-.+ ..|+.+.+..+..+|..-.-++
T Consensus 688 ~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal 742 (1133)
T KOG1943|consen 688 LPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILAL 742 (1133)
T ss_pred chH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 555 7799999999999999976543222222 5555555555555554433333
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.22 E-value=0.0013 Score=65.90 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC
Q 000156 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (2015)
Q Consensus 869 ~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~ 948 (2015)
.|+.||-.|..+.....+.+... +.+|++.+...+.|.++.|+..||+.+..|++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876443444433 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000156 949 KKHMRECTLTVLDAW 963 (2015)
Q Consensus 949 k~~Vr~aa~~aL~~i 963 (2015)
++.||.+| +.|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.10 E-value=0.002 Score=64.69 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCc
Q 000156 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (2015)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk 379 (2015)
.|+.+|..|.+++- -++-....+..|++.+.+.+.|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999988652 22223344578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000156 380 PTVAESLTQTLQAMH 394 (2015)
Q Consensus 380 ~~V~~aa~~aL~al~ 394 (2015)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999988 5565554
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.17 Score=65.81 Aligned_cols=375 Identities=14% Similarity=0.159 Sum_probs=199.1
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
.++.+.|.|++=..+++||..+..++....+.......+++- ..-.|..|...+.=.|..+++..++.. -
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKN------Vaskn~EVKkLVyvYLlrYAEeqpdLA----L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKN------VASKNIEVKKLVYVYLLRYAEEQPDLA----L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------hhccCHHHHHHHHHHHHHHhhcCCCce----e
Confidence 466778889999999999999998887755432222333332 345677777777766777777655432 1
Q ss_pred HHHHHHHhhhcchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHH
Q 000156 684 LCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (2015)
Q Consensus 684 ~il~~LveKlgD~K--~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~ 761 (2015)
.-|..+-.-|+|+. +|..|..+|..+--..-...++-.+-+ +..+.+|.||..+..+|.++.. .+.+ +-..+++
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~-~~~D~s~yVRk~AA~AIpKLYs-Ld~e--~k~qL~e 183 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKK-AVTDPSPYVRKTAAHAIPKLYS-LDPE--QKDQLEE 183 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHH-HhcCCcHHHHHHHHHhhHHHhc-CChh--hHHHHHH
Confidence 11333334467753 677776666554322212222333323 3467788888888888877653 1221 1235788
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHH----HhChhHH---hhhhhccH---H-HHHHHHHHHhcCCCCCCCCCcccccC
Q 000156 762 FCKDTGLQSSAAATRNATIKLLGALHK----FVGPDIK---GFLADVKP---A-LLSALDAEYEKNPFEGTVVPKKTVRA 830 (2015)
Q Consensus 762 ~l~~~gL~~sn~~VR~aA~~ll~~Ly~----~~G~~l~---~~L~~lkp---~-ll~~Le~ef~k~~~~~~p~p~R~~r~ 830 (2015)
.++++ |.|.+|-|-.+|..++.++|- .++...+ .+|.++.. . ++..| -.+.+... +.|+.
T Consensus 184 ~I~~L-LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL-~RYAR~~l---~~P~~---- 254 (968)
T KOG1060|consen 184 VIKKL-LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINML-TRYARHQL---PDPTV---- 254 (968)
T ss_pred HHHHH-hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHH-HHHHHhcC---CCccc----
Confidence 88888 888888888888887776651 1111111 11111110 0 01111 11111111 00000
Q ss_pred ccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHH
Q 000156 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (2015)
Q Consensus 831 ~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~ 910 (2015)
. ++.+.... .|-+-+.... . ++ .+.....+...|++..+..|...|..
T Consensus 255 ---~-------~~~~e~n~-------------~~~~~~~~~~---~----~~--~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 255 ---V-------DSSLEDNG-------------RSCNLKDKYN---E----IR--TPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred ---c-------ccccccCc-------------cccccccccc---c----cC--CCcccCccHHHHHHhccHHHhcCCcH
Confidence 0 00000000 0000000000 0 00 01111223466788888889999999
Q ss_pred HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHH
Q 000156 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 911 V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R 990 (2015)
|+..+++++=.+|... -+..|+-+++..|..+ ..++.....++..+..... .-|.|.+-...--.+...+++
T Consensus 303 VVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-TLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-hhhhhhhhceEeecCCHHHHH
Confidence 9999999888887543 2234455666655544 3466666667766665543 233344433332111112333
Q ss_pred HHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
.-=++.|...+. ...+..++.-+..-+.+.+-++-.+|.++++.....+|.
T Consensus 375 ~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 375 ILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 333333333222 234566777777777666667888888888887777764
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=2.8 Score=55.47 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhcchhhhH-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHH
Q 000156 347 QAIGNLARGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLN 425 (2015)
Q Consensus 347 ~~l~~La~~L~~~f~~~~~-~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~ 425 (2015)
+=+|+||-.|-=+=.+-+- .+...|-+-|...++.|+-.|-.++..++.. --..++.|++..-+++.+|-+|.-++.
T Consensus 87 KRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~L 164 (866)
T KOG1062|consen 87 KRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAAL 164 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHH
Confidence 3456666654322222333 3444455557788888888777777777643 334688999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 426 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 426 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
...+++.+.+. .+..+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 165 ca~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 165 CAVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 99998876543 247788999999999999998888888877776644
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=1.1 Score=58.93 Aligned_cols=129 Identities=15% Similarity=0.243 Sum_probs=87.6
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--ch
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LD 970 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~ 970 (2015)
+.+++.-|+..-.+-+...+..++++++.+|...... ..++..++..+.-+...|.+.+...+..+.+.++ ++
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4667777888888888999999999999988665433 5678888888887888888888889999998886 35
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHH-HHhccCCCCCChhhhHHHHHhhcCCCChHHHHH
Q 000156 971 KMVPYVTTALTDAKLGAEGRKDLFDWLS-KQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKA 1031 (2015)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~-~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~a 1031 (2015)
.+++.+...+.+=. +|+.|..+ .||. ++...+ ++...++.-++....|....|+-.
T Consensus 423 ~vv~~l~~~~~sl~-epeak~am-iWilg~y~~~i---~~a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 423 SVVAILCENLDSLQ-EPEAKAAL-IWILGEYAERI---ENALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred hhhhhhcccccccC-ChHHHHHH-HHHHhhhhhcc---CcHHHHHHHHHhhcccchHHHHHH
Confidence 56665554443211 46666554 4543 322222 244556666777777777666553
No 58
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.66 Score=60.26 Aligned_cols=345 Identities=14% Similarity=0.219 Sum_probs=188.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccc----------cCCCC------------------------Chhh---HHH
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANK----------RIQPA------------------------GTGE---LFG 898 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~----------~I~~~------------------------~~~e---L~~ 898 (2015)
.++-+.++..+-+.+.+||..+-.++-+..+ +..|. .+.| +..
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 3677788888999999999988776653211 11111 0111 123
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH----
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP---- 974 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~---- 974 (2015)
++++-|+-.|..|+-.+++.+..|-. ...++.++|.+..+|.....-||.-|.-|+..+.... +.++|
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDape 174 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAPE 174 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChHH
Confidence 34444556677777777766554321 1457889999999999999999999999999999873 22222
Q ss_pred HHHHHHhcCCCChhH------------HHHHHHHHHHHhccCCCCCChhh-hHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 975 YVTTALTDAKLGAEG------------RKDLFDWLSKQLTGLSGFPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 975 ~l~~~L~~~k~~p~~------------R~~~l~~L~~~l~~~~~~~~~~~-ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
.+..+|..+. .|.- +..++.||..++...+.-.+..+ .+.-++.-...+++.-|..-.+|+-.+..
T Consensus 175 Li~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 175 LIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence 2333443221 1222 23466677666665554222222 22222221122555555555555543333
Q ss_pred HcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccc
Q 000156 1042 AGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSV 1121 (2015)
Q Consensus 1042 ~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~ 1121 (2015)
.-.....-+....|- ..+ ..|. +-+
T Consensus 254 stssaV~fEaa~tlv---------------------------------------------~lS--------~~p~--alk 278 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLV---------------------------------------------TLS--------NDPT--ALK 278 (948)
T ss_pred cCCchhhhhhcceEE---------------------------------------------Ecc--------CCHH--HHH
Confidence 221111111100000 000 0000 000
Q ss_pred chhhhhhhhhcc-----cCCCChHHHhhhhhccccccCCChhHHHHHHHHHHhhhh---HHHHHhhcccCHHHHHHHHHH
Q 000156 1122 QDFAVQSQALLN-----VKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDGLEM 1193 (2015)
Q Consensus 1122 ~~~~~~~~~~~~-----~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L~~q~~~~~~---~~l~~~lf~~D~k~~~~al~~ 1193 (2015)
...+..+. ..+|.|- .+ .|-+.+|++....++. =+++.-|-+.|+.-|-++++.
T Consensus 279 ----~Aa~~~i~l~~kesdnnvkl-----Iv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 279 ----AAASTYIDLLVKESDNNVKL-----IV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred ----HHHHHHHHHHHhccCcchhh-----hh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 00111111 0111121 10 0111122222222222 267778889999999999998
Q ss_pred HHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHH
Q 000156 1194 LQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVR 1273 (2015)
Q Consensus 1194 L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr 1273 (2015)
..+...+. |..-+..++..++.+||..-.-+.-.|=+.|+..+...--.|.++ |+..||.|++-+||..+..-
T Consensus 341 ~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 341 ALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCHHHH
Confidence 87776543 333355667778888877655556666666777777766778876 88899999999999887766
Q ss_pred HHHHHHHHHHhhccCc
Q 000156 1274 EKMRELTKQIVNFYSA 1289 (2015)
Q Consensus 1274 ~~v~~il~~i~~vy~~ 1289 (2015)
..|-..++.....||.
T Consensus 414 s~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHhCch
Confidence 6666666555555553
No 59
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.09 Score=66.96 Aligned_cols=365 Identities=15% Similarity=0.130 Sum_probs=210.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+..+..+.+.+-..+..+.+.+++++..- ++.|..-.-..+++.|...| .+.+..++..|.-++..||...-..-..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 45566677777777999999999999631 11121111234566777777 47788999999999999986553332223
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c------hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000156 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-l------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
+. ..+|.++.++..+...|++-|.-+|..++.... + -..++.++..+... .+..=..-+.|....|...+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~--~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS--DKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc--cchHHHHHHHHHHHHHHcCC
Confidence 22 367889999999999999999999998885543 1 12334455555433 12111233556655665544
Q ss_pred -CCCC---hhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCC
Q 000156 1006 -GFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081 (2015)
Q Consensus 1006 -~~~~---~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~ 1081 (2015)
..+. +..+++.|..++.+.+.+|..-|.-++..+.....+ .+. .+ ++......+.+.+.....+..
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq-~v--i~~gvv~~LV~lL~~~~~~v~------ 296 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQ-MV--IDAGVVPRLVDLLGHSSPKVV------ 296 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHH-HH--HHccchHHHHHHHcCCCcccc------
Confidence 2333 455666688899999999998877666655433332 211 11 122233444555444322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhc---------ccCCCChHHHhhhhhccccc
Q 000156 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKDSNKEDRERMVVRRFKF 1152 (2015)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~R~~~~~~k~~f 1152 (2015)
.++.|+. +.+. .+.+.+++..+ .+..+..+.-+|. --=|..
T Consensus 297 ---------------~PaLRai--GNIv------------tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk-EAcW~i 346 (514)
T KOG0166|consen 297 ---------------TPALRAI--GNIV------------TGSDEQTQVVINSGALPVLSNLLSSSPKESIKK-EACWTI 346 (514)
T ss_pred ---------------cHHHhhc--ccee------------eccHHHHHHHHhcChHHHHHHHhccCcchhHHH-HHHHHH
Confidence 0000000 0000 01112222211 1112111110111 112443
Q ss_pred cCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHH--HHHHHHHHHHhhcCcchHHHHH
Q 000156 1153 EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTTCLLK 1230 (2015)
Q Consensus 1153 ~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~--lDlllk~~~lr~~dtN~~vl~k 1230 (2015)
..-.....++.+.-|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++++..
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 32222233445555666777889999999999999999999998887776554432 2236777777777789999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHHhhcC
Q 000156 1231 VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (2015)
Q Consensus 1231 ~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd 1267 (2015)
+||.|..++..-.... .+.. .-+.-+++..|-
T Consensus 427 ~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 9999998877654432 1100 344555666554
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.82 E-value=0.019 Score=64.77 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
++.+|..++-.+..++.. .|+.....++.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r-----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899999999999863 2333456778888999999999999999999998753 55555566778999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------CCChhHHHHHHHHHHHHhcc
Q 000156 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~-------k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 445566666666532 22456688888888877763
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.81 E-value=0.66 Score=59.75 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=138.9
Q ss_pred HHHHh-cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
.++.. ....++-.|..+++.+..+++ |......+.+++..+...+ .......+..++.++..+++++--.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44443 344458999999999998874 4333334567777777766 566777888999999999998865556788
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCCCChhHHHHHHH
Q 000156 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (2015)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~--------g-----------l~~ll~~l~~~L~~~k~~p~~R~~~l~ 995 (2015)
..++..+++.|.| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667788888888777541 1 234455555555543 2346777777
Q ss_pred HHHHHhccCCCC---CChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000156 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (2015)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L 1055 (2015)
.|.-.+.+.+.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 777777777752 566777777999999889999999999999888777 55667666543
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=5.2 Score=56.38 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHH--------HhChhhHHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHhc-Cc---hh
Q 000156 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAAV-HL---DK 971 (2015)
Q Consensus 908 N~~V~~~Al~~l~~La~--------alg~~f~~~~~~llp~ll~~L----~D~k~~Vr~aa~~aL~~i~~~~-gl---~~ 971 (2015)
|.....-.+-++|.++. .-|+.+.+....+.-.++.+| ++.+..+|..|..+|+.++-.- ++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44455667788888886 334555555555555555555 4777899999999999887543 32 34
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000156 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2015)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2015)
+...+...|.+.+.+...|..++.-+-.++.
T Consensus 1265 v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1265 VLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 5556666676554223337777766655554
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.76 E-value=0.09 Score=67.56 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=149.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000156 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~~~ki~~~-~y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2015)
...++..|..+++.+..+++ |...+ .+.+++..+...+ ..........++.++.-+++||=-+-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45669999999998888886 33333 4677777777777 46666678888999999999886556788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh--cC----CC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKA--GC----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~--~~----~~-----------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 435 (2015)
+.+.+ +.+...+..++..++.. .+ .+ +..++|.+..+.+..+...|...+..|..++++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777777777654 00 01 34567778888887777799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccH
Q 000156 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2015)
Q Consensus 436 ~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2015)
+..+...++.++|.+.++|+=.+++||.++.+++..+..--. ..+..++..|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 988889999999999999999999999999999988876653 346666665543
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.1 Score=68.20 Aligned_cols=364 Identities=20% Similarity=0.204 Sum_probs=203.9
Q ss_pred hhcCCChhhhhcCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000156 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (2015)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~ 89 (2015)
+|---|+..-+.|++-=.|..+---+.+++.-..+ --+-.-+.+.++.++.|+|+.|--.++.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 34444556666666666666666666666542111 0001124566677788888888888888887776654321
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC-
Q 000156 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK- 162 (2015)
Q Consensus 90 ~~~~v~~~LieK~l~~k~~~k~~a----~~~ll~~~E~~--~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~- 162 (2015)
....+.+.++.+.+.+....-+.+ ++++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-.-
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111223333444333223333333 23333332111 13467777777888888888888888777766655330
Q ss_pred CcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 000156 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (2015)
Q Consensus 163 ~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~ 242 (2015)
..-.+.+-+.+..+++... . +---.+++++- ++...+.....++.-.|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e-------~qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-E-------IQYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-h-------hhHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0012223333333333211 1 00011222210 011111111011100000
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000156 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (2015)
Q Consensus 243 ~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~ 322 (2015)
.+.|| .| .+.+-++.+..+++. .+
T Consensus 324 -------------------------------kynDP-----------iY---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDP-----------IY---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCc-----------hh---------hHHHHHHHHHHHhhH-----hH
Confidence 01111 11 112334444444431 23
Q ss_pred hHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000156 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (2015)
Q Consensus 323 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~ 402 (2015)
..++...|+..-.+..+..+..|++||+.+|...... ..++..+|+.+.-+..-|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5567777887778889999999999999999877654 67999999999988888999999999999988222346
Q ss_pred hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 403 ~il~~l~~~L~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
.++..+...+.+ .+|..|.+...+++...+..+. ...++..+.+...|...+| ..+.+.+.+++|+.+
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 677777766664 6788886555444444433322 2556777888888888777 567777777777754
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.86 Score=59.10 Aligned_cols=261 Identities=12% Similarity=0.163 Sum_probs=144.1
Q ss_pred HHHhCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCc
Q 000156 156 LSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (2015)
Q Consensus 156 l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R 235 (2015)
|..|++.-+ .+.+-..+..+|+|+-+-||..|+.++--+|-.-.+ ++++.+ ..|+ +++.. +-|.
T Consensus 133 LS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~F-prL~-----------EkLeD-pDp~- 196 (877)
T KOG1059|consen 133 LSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCF-PRLV-----------EKLED-PDPS- 196 (877)
T ss_pred cccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhH-HHHH-----------HhccC-CCch-
Confidence 456777422 266888888999999999999998887777766654 565543 3322 12221 1110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh--ccCChHHHHHHHHHHHHHh
Q 000156 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV--KATKWSERKDAVAELTKLA 313 (2015)
Q Consensus 236 ~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l--~s~kWkeR~eaL~~L~~l~ 313 (2015)
+-|....-- +.. +- =+|- +-+. |. +.||+.+ .+.+|---+ -++-+.+|.
T Consensus 197 -V~SAAV~VI----------CEL----Ar-----KnPk------nyL~-LA-P~ffkllttSsNNWmLIK-iiKLF~aLt 247 (877)
T KOG1059|consen 197 -VVSAAVSVI----------CEL----AR-----KNPQ------NYLQ-LA-PLFYKLLVTSSNNWVLIK-LLKLFAALT 247 (877)
T ss_pred -HHHHHHHHH----------HHH----Hh-----hCCc------cccc-cc-HHHHHHHhccCCCeehHH-HHHHHhhcc
Confidence 111100000 000 00 0111 1111 22 4788877 458995321 233333333
Q ss_pred c-CCCCCCCChHHHHHHHHHHhcccC-HHHHHHHHHHHHH--HHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHH
Q 000156 314 S-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGN--LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQT 389 (2015)
Q Consensus 314 ~-~~ki~~~~y~~l~~~L~k~l~D~N-~~V~~~A~~~l~~--La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~a 389 (2015)
- .|++-. .|+.-|...+..+. -.+..++++|+-. |..|+..+ ...+..++.-|=.-+-|+.++..=-+.-|
T Consensus 248 plEPRLgK----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 248 PLEPRLGK----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred ccCchhhh----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 1 343332 23444444443221 1133333333211 12223333 34566777777777788999998888888
Q ss_pred HHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCH-HHHHHHHHH
Q 000156 390 LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAAFSV 468 (2015)
Q Consensus 390 L~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~-~VR~aA~~a 468 (2015)
+.-+.......+....+.|+.+|.++.+.+|..++..|.-++.. +.+.+|+..|+..+.+++. .-|+.-..-
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-------kNl~eIVk~LM~~~~~ae~t~yrdell~~ 395 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-------KNLMEIVKTLMKHVEKAEGTNYRDELLTR 395 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88877642222344457788999999999999999998877653 2347778888888887777 555554444
Q ss_pred HHHHH
Q 000156 469 LAAIA 473 (2015)
Q Consensus 469 l~~l~ 473 (2015)
+..++
T Consensus 396 II~iC 400 (877)
T KOG1059|consen 396 IISIC 400 (877)
T ss_pred HHHHh
Confidence 43333
No 66
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.51 E-value=0.43 Score=59.59 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
..|..|..+++.+..+- ..+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888877776543 2566788888999999999999999888776443 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCC
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (2015)
+.|....||.++..++..+ |...-.+.+...+.+. ++.++.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999998887654 5566667778888765 3455555444443 112344566688889999
Q ss_pred ChHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000156 1025 SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (2015)
Q Consensus 1025 ~~~VR~aA~~~L~~l~~~~G~~~~~~~l 1052 (2015)
+..+|..+...+..+.............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~ 315 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLAL 315 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHh
Confidence 9999999998888776555554444443
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.41 E-value=0.0061 Score=54.50 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
|.+|..++..|+++.. .....+.++++.++|.|..+|.|.+++||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999988443 334456678899999999999999999999999999754
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.40 E-value=0.078 Score=59.86 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-HHHHHHHHhhcCC
Q 000156 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (2015)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~-il~~l~~~L~~Kn 416 (2015)
|+.|+..++.+++.|+... ...++..+|.+...+.|+.+.||..+..+|..++..+...+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 4678899999999998754 4567778899999999999999999999999998875555554 4488888999999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
+.||..+..++..+.....+..+...+.+++-.+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999887744444433333333333
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.39 E-value=0.021 Score=56.06 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000156 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2015)
Q Consensus 368 lp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2015)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.+...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889989 89999999887777762 34568899999999999999999999998864 1 1557
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000156 447 VPICMECLND-GTPEVRDAAFSVLA 470 (2015)
Q Consensus 447 ~p~l~k~L~D-s~~~VR~aA~~al~ 470 (2015)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 55678999999885
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.23 Score=63.52 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=161.5
Q ss_pred chhhhHHHHHHHHHHHhhhChh-HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCC-CC---CChh---hHHHHHHhc
Q 000156 695 DIKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SH---LKLK---DLIDFCKDT 766 (2015)
Q Consensus 695 D~K~r~~a~~~L~~l~e~~~~~-~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~-~~---l~~k---~li~~l~~~ 766 (2015)
|.++|..|.+.|.++.|-+... ...++..+.+ .+.+--||.+++..+.-.-+.+.. .. -+.+ .....+-.+
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~ 289 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKLSKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRA 289 (823)
T ss_pred CcchHHHHHHHHHhhcccccccHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHH
Confidence 4678888888888888855433 3455555554 566777888887766655554421 10 1111 122222233
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc----CCCCCCCCCcccccCccccCCCCCC-C
Q 000156 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK----NPFEGTVVPKKTVRASESTSSVSSG-G 841 (2015)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k----~~~~~~p~p~R~~r~~~~~~s~~~~-~ 841 (2015)
+.|-.-.||-.|.++||.+-.... .| +.++|++..-. -.. ..-.|.+...+ .+=.+|. .
T Consensus 290 -v~D~sl~VRV~AaK~lG~~~~vSe----e~-------i~QTLdKKlms~lRRkr~-ahkrpk~l~s~---GewSsGk~~ 353 (823)
T KOG2259|consen 290 -VRDRSLSVRVEAAKALGEFEQVSE----EI-------IQQTLDKKLMSRLRRKRT-AHKRPKALYSS---GEWSSGKEW 353 (823)
T ss_pred -HhcCceeeeehHHHHhchHHHhHH----HH-------HHHHHHHHHhhhhhhhhh-cccchHHHHhc---CCcccCccc
Confidence 777888899999999988754321 12 22333332211 000 00001111000 0000000 0
Q ss_pred CCCCCCc-------cc-ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHH
Q 000156 842 SDGLPRE-------DI-SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913 (2015)
Q Consensus 842 ~d~lprv-------dI-s~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~ 913 (2015)
.+..|.. .| -+--.+.|+-+++|.=+.+|..|+..+..+... + |.--..-+..|...|+|--..|+.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---s--P~FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---S--PGFAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---C--CCcHHHHHHHHHHHhccHHHHHHH
Confidence 1112211 11 111235788889999999999999999998752 1 221256678889999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCChhHH
Q 000156 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGR 990 (2015)
Q Consensus 914 ~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p~~R 990 (2015)
.|+..+..|+..+ ..-+..++.++..|.|....||++..+.|... +... ++.++..+...|. ++ |+-|
T Consensus 429 ~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~--ky-PqDr 499 (823)
T KOG2259|consen 429 KAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLG--KY-PQDR 499 (823)
T ss_pred HHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhh--hC-CCCc
Confidence 9999999999774 34466789999999999999999987766532 1111 2223333333333 32 6667
Q ss_pred HHHHHHHHHHhc
Q 000156 991 KDLFDWLSKQLT 1002 (2015)
Q Consensus 991 ~~~l~~L~~~l~ 1002 (2015)
-+++.-+...=+
T Consensus 500 d~i~~cm~~iGq 511 (823)
T KOG2259|consen 500 DEILRCMGRIGQ 511 (823)
T ss_pred HHHHHHHHHHhc
Confidence 777777665433
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.6 Score=57.46 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=132.8
Q ss_pred hCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHH
Q 000156 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807 (2015)
Q Consensus 728 ~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~ 807 (2015)
++.+|-+|..++.+...++..-.- .+..++...+++ |.+.+.+|--++..++.+|... +++-.+++.++-|.+..
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~l-L~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~ 226 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKL-LCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVK 226 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHH-HhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 455666666666666555543211 123355555666 7777888888888888777754 34444566777777666
Q ss_pred HHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhc--c
Q 000156 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA--N 885 (2015)
Q Consensus 808 ~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a--~ 885 (2015)
.|.+-...- + .|.-. -.|..|.+=.+.| . -+++-++..+-..-...-+-|.+++..+ +
T Consensus 227 iLk~l~~~~-y----speyd----------v~gi~dPFLQi~i----L-rlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 227 ILKQLTNSG-Y----SPEYD----------VHGISDPFLQIRI----L-RLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHhcCC-C----CCccC----------ccCCCchHHHHHH----H-HHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 666543211 0 00000 0000111000000 0 1112222221111111112222222210 1
Q ss_pred ccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhh--------------H-HhhhHHHHHHHHHhCCCc
Q 000156 886 KRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAV--------------E-KSSKGVLSDILKCLGDNK 949 (2015)
Q Consensus 886 ~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f--------------~-~~~~~llp~ll~~L~D~k 949 (2015)
+.+.. .=|.......+ -++|..++..|+++|+.+...-..++ + ..+..-=..++.||+|..
T Consensus 287 kN~Gn---AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 287 KNAGN---AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred ccchh---HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 11110 11222222222 23445555555555555442222111 1 122233467899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000156 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2015)
Q Consensus 950 ~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2015)
..+|.-|.+-+..++..-.+..++..+..+|... .++.|.++...+.+..+.+.+.
T Consensus 364 ~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999855 5789999999998888777654
No 72
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.1 Score=63.95 Aligned_cols=407 Identities=17% Similarity=0.146 Sum_probs=194.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhccCCCC-----------chHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000156 19 RLLHKNWKVRNEANIDLAALCDSITDPK-----------DNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (2015)
Q Consensus 19 rl~~k~WK~R~~ayeeL~~~~~~~~d~~-----------~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~ 87 (2015)
++.|-.-|.|..|+.-+....+.++.-. .|+.. -..++.-.++|.|+...--+|+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 4567778999999998888876542110 01110 012233368999999999999999888876532 2
Q ss_pred hhhHHHHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC
Q 000156 88 GRYAKEVCDAIAAKCLTG-----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK 162 (2015)
Q Consensus 88 ~~~~~~v~~~LieK~l~~-----k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~ 162 (2015)
-....+. -+-.|+. -..++ .+-.|++...|.| -.|.++..|+.+|..++.+-...
T Consensus 82 ls~a~~~----~~~~ftpf~v~~a~si~-~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~ 141 (728)
T KOG4535|consen 82 LSVAEDT----SDHAFTPFSVMIACSIR-ELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYD 141 (728)
T ss_pred HHHHhcc----CCcCCCchHHHHHHHHH-HHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchH
Confidence 1110000 0000100 00011 1223333333332 34667788888888888764433
Q ss_pred CcC---hhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHH--hcC-CCCCCCcc
Q 000156 163 IIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELV--NVS-GTARPTRK 236 (2015)
Q Consensus 163 ~i~---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~--k~~-~~~~P~R~ 236 (2015)
.+. +-.+.-++.++..|.|++||-.+..++..|..-- .+.|.....|..... +.. .-..|...
T Consensus 142 ~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~-----------~~~pei~~~~~~~~s~~n~~~~h~s~~~~ 210 (728)
T KOG4535|consen 142 RLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH-----------APLPEVQLLLQQPCSSSNSATPHLSPPDW 210 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC-----------CCCHHHHHHhcCCCccccccCCCCCChHH
Confidence 222 2346778899999999999999887766654221 121211111100000 000 00001000
Q ss_pred chhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhh------hhcc--CChHHHHHHHHH
Q 000156 237 IRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDAVAE 308 (2015)
Q Consensus 237 ~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~------~l~s--~kWkeR~eaL~~ 308 (2015)
. ++.. .|+...+-.++.+.+...+--++.++--..-+++.+-+. .+++ .---.|.|+++-
T Consensus 211 ~-----~~l~-------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qv 278 (728)
T KOG4535|consen 211 W-----KKLP-------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQV 278 (728)
T ss_pred H-----HhcC-------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHH
Confidence 0 0000 000000000000011111112222221111122222111 1111 223468899998
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh--hhHhHHHHHHHHhc----------
Q 000156 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKLK---------- 376 (2015)
Q Consensus 309 L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~klk---------- 376 (2015)
|..++..-.+....+.++.+.+.+.+.|.-+.+-..+.+|+..+..++.....| .-..+.-..+-..-
T Consensus 279 l~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~Y 358 (728)
T KOG4535|consen 279 LTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALY 358 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhh
Confidence 887765333333446678888888888999999999999999999988843321 11111111111111
Q ss_pred c-CcHHHHHHHHHHHHHHHHhcCCChHh----HHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 377 E-KKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 377 d-kk~~V~~aa~~aL~al~~~~~~~l~~----il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
| --.....++..++..|.......+++ ..+....++. |||--+|.+++..+.-.+-+..-.............+
T Consensus 359 Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~i 438 (728)
T KOG4535|consen 359 DSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAI 438 (728)
T ss_pred hhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHH
Confidence 1 11122233334443333221112222 2333344443 7777777777666554443332222112234445555
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 000156 451 MECLNDGTPEVRDAAFSVLA 470 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~ 470 (2015)
...+.|+.=.+|..|+=+++
T Consensus 439 l~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 439 LMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred HHHhhhHhHhHHHHHHHHhh
Confidence 66666666666666655444
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.24 E-value=0.13 Score=63.16 Aligned_cols=184 Identities=19% Similarity=0.159 Sum_probs=123.2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhC--hhh
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAV 930 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg--~~f 930 (2015)
+.+..+.+++-+.|.+||+.+..++.. +..+. .+..|+..+.+.++-....=...|+++++.++-.+| .+-
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS---RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 567778999999999999999999973 22221 246778888877765555667789999999999987 666
Q ss_pred HHhhhHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chh------hHHHHHHH--Hh-cCCC-------ChhHH
Q 000156 931 EKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDK------MVPYVTTA--LT-DAKL-------GAEGR 990 (2015)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~g--l~~------ll~~l~~~--L~-~~k~-------~p~~R 990 (2015)
+...+.+.|.|...+.|... .+|.++..||..+.-.++ .+. .+..++.. ++ +.+. ++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 77888999999999988653 477888888877655443 222 23322221 22 1110 12333
Q ss_pred -HHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 991 -KDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 991 -~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..+-.|- -.+...+. ...+...++.+..+|+..+.+||.+|-+++..++....
T Consensus 204 ~aAL~aW~-lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWA-LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3334442 23333332 11234455558889999999999999999998877665
No 74
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.19 E-value=1.5 Score=52.57 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=162.2
Q ss_pred hhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCCccchhhhhHhhhhhcc
Q 000156 171 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250 (2015)
Q Consensus 171 ~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~~P~R~~rs~~~~~~~~ea~ 250 (2015)
..|.+.|-+.|..+|..|+.++.++-..+.++ .|...++.-|-+.|
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~-------------------------- 47 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFF-------------------------- 47 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHH--------------------------
Confidence 34667788899999999999988888777542 23333333332222
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 000156 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 330 (2015)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L 330 (2015)
.+++ .+|.-=..++..+.+|++...+..+....++..+
T Consensus 48 ----------------------------------------~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 48 ----------------------------------------CSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred ----------------------------------------HHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 2222 2344445566777777765555555555666655
Q ss_pred HHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHH
Q 000156 331 KKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 407 (2015)
Q Consensus 331 ~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~ 407 (2015)
.+.+. .--...+....+++..|...-+.....+...++..+++.+ +||.|.-.--+...+..+... ..+....++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~ 163 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAED 163 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHH
Confidence 54333 2222345666777777776655555556677888888887 788888777778888877776 555667777
Q ss_pred HHHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 408 VKTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 408 l~~~L~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+...+. .+| | -.|...-.-|..|+..++ .+ .+..+|.+..-|..+.+.|+.-+.++|......
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--~f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--LF---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--hh---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 765542 122 2 356666677777776432 12 367889999999999999999999999999999
Q ss_pred hCchHHHHHHHhccHHHHH
Q 000156 476 VGMRPLERSIEKLDDVRRN 494 (2015)
Q Consensus 476 ~Ge~~~~~~l~~Ld~~~~k 494 (2015)
+|.+.+.+++..+=+.-|.
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9988899988887554443
No 75
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.06 E-value=0.043 Score=61.55 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000156 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 397 (2015)
Q Consensus 340 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkk~~V~~aa~~aL~al~~~~--------- 397 (2015)
+|+..|+.||+.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999994 566888888888865 33 247999999999999999998750
Q ss_pred ----C---CCh----HhHHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhcCCCHH
Q 000156 398 ----C---LNL----VDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 398 ----~---~~l----~~il~----~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
. +++ ..++- .+..+++ .+++.+-.+.++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 112 22232 3345555 578889999999999999988766554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000156 461 VRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 461 VR~aA~~al~~l~~~~G 477 (2015)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876544
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.02 E-value=0.03 Score=57.99 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=84.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---CC-ChH-hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CL-NLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~---~~-~l~-~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
.+++.+++.+.+.+..++..+..+|..+.... +. -.. .+++.+...+.+.++.++..++..|..+....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999987641 00 012 56788888999999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 441 ~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
... ..+++.+.+++++.+.++|..|..+|+.+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 348999999999999999999999998764
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.02 E-value=0.02 Score=56.25 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=68.1
Q ss_pred hHHHHhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000156 856 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (2015)
Q Consensus 856 ~~ll~~l-~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~ 934 (2015)
+.|++.+ +|++|.+|.++++.+..+- -.+.++.|...++|.|..|+..|+..++.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 3577777 8999999999988887321 2578999999999999999999999999873 2
Q ss_pred hHHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 000156 935 KGVLSDILKCLGDN-KKHMRECTLTVLD 961 (2015)
Q Consensus 935 ~~llp~ll~~L~D~-k~~Vr~aa~~aL~ 961 (2015)
+..++.+.+.+.+. ...||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45788888888775 5667999988874
No 78
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.57 Score=60.60 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=109.3
Q ss_pred cchHHHHhc--CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHHHHHHHHHHHhC-hh
Q 000156 854 FTPTLVKSL--ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMG-PA 929 (2015)
Q Consensus 854 L~~~ll~~l--~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg-~~ 929 (2015)
+.|.|++.+ ++.||- +-.|-++.. +-..+.|..-..|+..|...+... -..+.-.+++++-.....-| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 567888876 444893 333444443 234566665567888888777433 33455555555433321222 24
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC
Q 000156 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~ 1007 (2015)
-...+..++..+-..+-|+.++.+--+..|+..++..-+ +...-+.|..+|.+. .+..|..++..+-..+. .
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs----k 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS----K 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh----h
Confidence 445566677777777889999999998888888775432 233445677888766 46778888877766554 3
Q ss_pred CChhhhHHHHHhhcCCCCh-HHHHHHHHHHHHHHHHcChh
Q 000156 1008 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQE 1046 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~-~VR~aA~~~L~~l~~~~G~~ 1046 (2015)
..+..+++.+...+.+..+ ..|..-..-+-.+...-.|.
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~ 406 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQ 406 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhh
Confidence 3566677777777666655 55655444444444433343
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.01 E-value=5 Score=50.01 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=108.5
Q ss_pred hhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhH-HhhhhhccHHHHHHHHH-HHhcCCCCCCCCCcccccCcccc
Q 000156 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPALLSALDA-EYEKNPFEGTVVPKKTVRASEST 834 (2015)
Q Consensus 757 k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l-~~~L~~lkp~ll~~Le~-ef~k~~~~~~p~p~R~~r~~~~~ 834 (2015)
...+.|+..+ -.+.|.-||.+|+..++.+..+-|-.. ..|..+--..++..|.+ .|.+-... . . +.
T Consensus 390 T~~~~Fl~GC-~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Ka---a----w----tl 457 (728)
T KOG4535|consen 390 TLCITFLLGC-NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKA---A----W----SL 457 (728)
T ss_pred hhhHHHHhcc-cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHH---H----H----Hh
Confidence 3456666653 566678899999999887766666432 22333333333333333 23211000 0 0 00
Q ss_pred CCCCCCCCCCCCCcc-----cccccchHHHH---hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--
Q 000156 835 SSVSSGGSDGLPRED-----ISGKFTPTLVK---SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-- 904 (2015)
Q Consensus 835 ~s~~~~~~d~lprvd-----Is~~L~~~ll~---~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-- 904 (2015)
+.-.....+.+|.+| +++.+...++. .....+.|+|..+++.|..++.-- ..|.+-.++++++.=+..+
T Consensus 458 gnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~~~~~~~~l~~ 536 (728)
T KOG4535|consen 458 GNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEIIEESIQALIS 536 (728)
T ss_pred hhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHHHHHHHHhccc
Confidence 000000011222222 22222222221 234457999999999999887632 2233333577765444433
Q ss_pred ---ccchHHHHHHHHHHHHHHHHHhChhhH--HhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCc
Q 000156 905 ---YDSNKNLVMATLITLGAVASAMGPAVE--KSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 905 ---~DsN~~V~~~Al~~l~~La~alg~~f~--~~~~~llp~ll~~L~D~k~-~Vr~aa~~aL~~i~~~~gl 969 (2015)
...|..|+-.+|.+++.|.+.-.-+|. +.+..+++.++..+.|-+. -||.-|..+|.......+.
T Consensus 537 ~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~ 607 (728)
T KOG4535|consen 537 TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY 607 (728)
T ss_pred ceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence 456889999999999999865443332 5677788888877766443 3676666666555554443
No 80
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.01 E-value=0.013 Score=60.61 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=83.7
Q ss_pred chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+.+++.+.+.+|..|..++..|..+.... ........ .++++.|...|.|.|..|+..++.+++.|+..-......+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 356778888999999999999999988531 11111111 3678888889999999999999999999987654333333
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000156 934 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 934 ~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~ 964 (2015)
.. .+++.+++.+.+.+..++..+..+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 48999999999999999999999988764
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.00 E-value=0.0096 Score=46.60 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 446 l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
++|.+.++++|++++||.+|..||+.+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 82
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.98 E-value=2.3 Score=53.86 Aligned_cols=313 Identities=16% Similarity=0.207 Sum_probs=186.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhc----CCCCccc-HHHHHHHHHHHHHHHHHHc---
Q 000156 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (2015)
Q Consensus 609 ~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~------~~~~~Lv~~L~~----~pg~~Ds-N~qV~~~~Le~l~~l~~~~--- 674 (2015)
+|.+.+--.|.+||..|...+...+... ...+.+.+.+.. .+.=++. +..+..++|.++..++-..
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3566777889999999999987743321 123344444421 1222333 6678889999999887531
Q ss_pred CCCchhHHHHHHHHHHhhhcchh-hhHHHHHHHHHHHh-hhChhHH----HHHHHHHh---hh-CCChhHHHHHHHHHHH
Q 000156 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (2015)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgD~K-~r~~a~~~L~~l~e-~~~~~~V----l~~L~~~l---~~-~KnpKv~~~~l~~L~~ 744 (2015)
..++......++...++.+.++. .|..+...|..+.+ .+++.++ ...++..+ .+ -++--+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 23455555668888888887764 46666666666654 4554432 33333322 12 3455578899999999
Q ss_pred HHHHhCCCCC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000156 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (2015)
Q Consensus 745 li~~fG~~~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~ 823 (2015)
++..+...-. +...-++.+... +-++...+|..|+.+...+...+|+.- .+-+.+.+.++..-.+
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~---- 226 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLEN---- 226 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhcccccc----
Confidence 9988754211 223344455454 678899999999999988888888531 1112222222211000
Q ss_pred CcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCC-CChHHHHHHHH---HHHHHHHhccccCC-CCChhhHHH
Q 000156 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIE---AVNKILEEANKRIQ-PAGTGELFG 898 (2015)
Q Consensus 824 p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d-~~Wk~R~eale---~L~~ll~~a~~~I~-~~~~~eL~~ 898 (2015)
. .+...+.+.+...+.+ ++++ .+++ .+-.++. ++.+. ...+.+.+.
T Consensus 227 -----------------------~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 227 -----------------------G-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLK 277 (372)
T ss_pred -----------------------c-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHH
Confidence 0 0011122223333344 2221 1222 2223332 12222 233578888
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChh---hHHhhhHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 964 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~---f~~~~~~llp~ll~~L~D~k-----~~Vr~aa~~aL~~i~ 964 (2015)
.....++.++..++.+|+.++..+.-++..+ ..+.++.++.++...+...+ ..++.++..++..+.
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999988765 34667778888877765322 267777777666554
No 83
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.94 E-value=7.6 Score=52.10 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCCC
Q 000156 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 985 (2015)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l~~ll~~l~~~L~~~k~ 985 (2015)
..|+..++-+++.|+-+-+ ..++.++|.+.+-|.-+. ..||.-.+-++..++.+.. .+.++|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3577888888888887765 456677899988886554 4599999999999988874 689999999999988
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCh-hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 986 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 986 ~p~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
.+.+|..++..|++.++.--- .+ -.+..-++..|-|.+++||.-|..|+..+...--+
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 589999999999988763111 11 23344466678999999999999999988765443
No 84
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.13 Score=64.10 Aligned_cols=190 Identities=17% Similarity=0.158 Sum_probs=133.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCC--CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP--AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 858 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~--~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
+.....+..|+.|....-.+.++.. +.+-+ ..+++++..|..+..|++..++..|+.+++.++..+......|..
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~---~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~ 298 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKR---PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT 298 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhC---cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH
Confidence 3344566789999988777777775 33333 236899999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCCCChhHHHHHHHHHHHHhccCCC-
Q 000156 936 GVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (2015)
Q Consensus 936 ~llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~~ll~~-------l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~- 1006 (2015)
.++-.++..|-| .+..|.-.++.||..+......+.+-++ +.+.+.+. +++.|...+-.+.. +..+..
T Consensus 299 ~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~ 375 (533)
T KOG2032|consen 299 TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGG 375 (533)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCC
Confidence 999888877765 4567888888999888887654444332 22334444 46788765544332 222211
Q ss_pred --CCCh----hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000156 1007 --FPDA----AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2015)
Q Consensus 1007 --~~~~----~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2015)
...+ ..-..|++-.|+|+++-|-.|.+..+......++-+....++.
T Consensus 376 ~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 376 GWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred CchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1122 2234467778999999998888887776666666555555544
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.37 Score=60.20 Aligned_cols=210 Identities=16% Similarity=0.141 Sum_probs=138.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
.+.+.+.+.+|+.|...+--+..+...+.+.. +.+++++-.+.....|++..++..||.+|+.++.++..+.-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 44455788999999988887777776555543 67888999999999999999999999999999999877777777777
Q ss_pred HHHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000156 368 LPVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 438 (2015)
Q Consensus 368 lp~LL~klkd-kk~~V~~aa~~aL~al~~~-~~~~l~~i----l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---~ 438 (2015)
+-.++-.+-| -+..|.-.+..||..+... ....+..+ .-.+..-.++-++++|..+...++.+..-++.. .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 7777777755 3456666677777766654 11222222 223334556899999999988888766654432 1
Q ss_pred HHH-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHH
Q 000156 439 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (2015)
Q Consensus 439 l~~-~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~ 499 (2015)
+.. ..+...| +.-.++|++|.|-.|.+..+-+..--++-+....++++.-+..+..+++.
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~F 441 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAF 441 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHH
Confidence 211 1122223 23347999999977777666555444443445555553323333344443
No 86
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.48 E-value=0.068 Score=59.51 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=98.9
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHH---HHHhChh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~L---a~alg~~ 929 (2015)
+.+-|++++...+.--|.-|.+.+.+++.. +..+|.|-. .+|+..|+..|+-.|..|...+|+++..| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456889999988888888999999999986 556777764 89999999999999999999999999999 7888999
Q ss_pred hHHhhhHHHHHHHH--H----hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000156 930 VEKSSKGVLSDILK--C----LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (2015)
Q Consensus 930 f~~~~~~llp~ll~--~----L~-----D~k~~Vr~aa~~aL~~i~~~~gl~~ll 973 (2015)
+.+|.++++|.+-- . ++ ..++.+++...++|..+-++.|-+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 99999999998762 1 22 245678899999999888888865543
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.36 E-value=0.019 Score=51.31 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000156 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (2015)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i 963 (2015)
+.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3688999999999888888899999999999999999999999999999998753
No 88
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=4.8 Score=52.84 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC-
Q 000156 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA- 983 (2015)
Q Consensus 905 ~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~- 983 (2015)
.|.|.++ --+.-|..+. ..-+..+..++..++..|....-.||..+..-.-.++.+-....++..+..-+..-
T Consensus 292 sdnnvkl--Ivldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~ 365 (948)
T KOG1058|consen 292 SDNNVKL--IVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTH 365 (948)
T ss_pred cCcchhh--hhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcc
Confidence 4555443 3344444444 33345677888999999999999999998888888888777777777666554310
Q ss_pred ----CCChhHHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 984 ----KLGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 984 ----k~~p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
..+-.-|+.++..+..+.-+++ ++. ..+.-++..+.|.|+.--...-..+...+..++
T Consensus 366 ~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 366 NEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred ccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 0123458888888876654443 344 444458889999998644444444444444443
No 89
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=0.21 Score=64.22 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=126.6
Q ss_pred ccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhCh
Q 000156 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (2015)
Q Consensus 849 dIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~ 928 (2015)
|+...+-.-+++..++++-++|...++-|..++. .+..|....|..|...|..|+.|.-++|+.+|+.++..+-..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3444444467788899999999999999998886 346677777888999999999999999999999998887632222
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCC
Q 000156 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (2015)
Q Consensus 929 ~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~ 1008 (2015)
+=.+. ..++-.++ -.|+.+.||.+|..++.. -...+|.|.+-..+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~v-~n~l~~li--qnDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECPV-VNLLKDLI--QNDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred CcccH-HHHHHHHH--hcCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 11121 12222222 269999999998666532 122345555555443 3556777666665544 111 12
Q ss_pred ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000156 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2015)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2015)
....-+.-+-..|+|+.-+||.+++.++..=.-.+-...+...+..|+
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ld 274 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLD 274 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhc
Confidence 233444446679999999999999988864222222223455666665
No 90
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.97 E-value=0.16 Score=68.93 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCCCCh
Q 000156 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (2015)
Q Consensus 911 V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g---l~~ll~~l~~~L~~~k~~p 987 (2015)
-....+.++..++..||..+++ +-..+|.++.++......+|.++..|+..+..... +..+++.+...+.+- ..
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~ 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DK 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hh
Confidence 5556778888888899999988 77889999999999999999999999999998754 233444555555432 12
Q ss_pred hHHHHHHHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhH-------HHHHhccCCh
Q 000156 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (2015)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~-------~~~~l~~L~~ 1057 (2015)
-.|+.....+-.++..... .+-..-+++|++.++.|....||.+|.+++..++..++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2343333333333332221 23334567789999999999999999999999999988664 3333433334
Q ss_pred HHHHHHHHHHhh
Q 000156 1058 PALALILERIKL 1069 (2015)
Q Consensus 1058 ~~~~~i~~~l~k 1069 (2015)
..++.|+.+++.
T Consensus 949 ~erkFLeqlldp 960 (1549)
T KOG0392|consen 949 EERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHhcCc
Confidence 445555555544
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.97 E-value=1.1 Score=57.15 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=95.2
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
+.++..+.+.+..+|..++..+... . .+-...|...|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 3567778888999998887555431 1 22345677778899999999999999987632
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHH
Q 000156 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (2015)
Q Consensus 936 ~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (2015)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... ++..+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3455677779999999999999888444 4344444444433322 233444444444321 1125566
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
.|...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 6777777755 888887777643
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.94 E-value=3.3 Score=52.87 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=97.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+...+.|.+..+|.+|+..+..+-. .+....|...+.|.|..|+..|+..+..+. . +.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG----~------~~ 209 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAG----S------RL 209 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC----C------Hh
Confidence 45566778899999999999986532 445666777799999999999998876543 2 12
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (2015)
-...++..+.+....++..+...+. ..|-+..++.|...++++ .+|..++.-+... .....+.+
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~la----l~~~~~a~~~L~~ll~d~----~vr~~a~~AlG~l--------g~p~av~~ 273 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLA----VAGGPDAQAWLRELLQAA----ATRREALRAVGLV--------GDVEAAPW 273 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHH----hCCchhHHHHHHHHhcCh----hhHHHHHHHHHHc--------CCcchHHH
Confidence 2344454455555555544433332 236667888888888754 4677777666532 22456777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1017 l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
++..++|.- +|..|.+++ ..+.|-+.
T Consensus 274 L~~~l~d~~--~aR~A~eA~---~~ItG~~l 299 (410)
T TIGR02270 274 CLEAMREPP--WARLAGEAF---SLITGMDV 299 (410)
T ss_pred HHHHhcCcH--HHHHHHHHH---HHhhCCCc
Confidence 888887765 776666655 44566543
No 93
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.87 E-value=0.44 Score=51.34 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=82.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.||. ++-.+..++.. ++..-.+.+.+|++||+..|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 3456885 44455555542 233336899999999999999999999999999999999999754 366888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000156 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (2015)
Q Consensus 940 ~ll~~L~D------~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L 980 (2015)
.+++.+.. ....|++-+...+..|...++-++-+......|
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888853 467899999999999999876333333333334
No 94
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.86 E-value=0.43 Score=59.54 Aligned_cols=171 Identities=21% Similarity=0.219 Sum_probs=116.5
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~ 935 (2015)
..+++.+.+.+|-+|..+...+..+- ..+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999987754332 2578899999999999999999988655432 24
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCC--------Ch--hHHHHHHHHHHHHhccC
Q 000156 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 936 ~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~--------~p--~~R~~~l~~L~~~l~~~ 1004 (2015)
..++.++..|. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777888777 7999999999999988765443 3444555554310 01 2454444444421
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc--ChhHHHHHhccCChHH
Q 000156 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPA 1059 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~--G~~~~~~~l~~L~~~~ 1059 (2015)
.....+.++...+.|...+||.+|..+++.+.... ..+.+.+.+..-....
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEV 229 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHH
Confidence 22445666888999999999999999998876653 2233444443333333
No 95
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.79 E-value=31 Score=49.29 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHHHHHHHHhcC
Q 000156 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVPYVTTALTDA 983 (2015)
Q Consensus 933 ~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~~l~~~L~~~ 983 (2015)
.+..+++.+++++-|..-.+|..|++.+.-+.+. ++.-..+|++...-.++
T Consensus 1336 i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp 1388 (1692)
T KOG1020|consen 1336 IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDP 1388 (1692)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCCh
Confidence 4567889999999999999999999999888765 35566778777555444
No 96
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.57 E-value=0.19 Score=68.14 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000156 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2015)
Q Consensus 300 keR~eaL~~L~~l~~--~~ki~~~~y~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2015)
-+|+.|...|.-+.. ++.+. ..|..+-..|.+.+. |.|- -....+..+..++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 468877777766653 22221 224445555555554 3341 3344567777777778887877 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCC-ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000156 375 LKEKKPTVAESLTQTLQAMHKAGCL-NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2015)
Q Consensus 375 lkdkk~~V~~aa~~aL~al~~~~~~-~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2015)
....-..+|-++..|+..+++.+|. ....+++.+..-++.-.--+|++....+..++.......+.++..-+++.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 9999999999999999999986221 123345555555555555566666665555565444334556778899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchH-------HHHHHHhccHHHHHHHHHHHhc
Q 000156 454 LNDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAG 502 (2015)
Q Consensus 454 L~Ds~~~VR~aA~~al~~l~~~~Ge~~-------~~~~l~~Ld~~~~kkI~e~~~~ 502 (2015)
+.|....||++|.+++..+..+++.+. +...+-...+.-++.|+..++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999987532 3333333334445556665543
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=11 Score=49.40 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=92.9
Q ss_pred ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000156 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 892 ~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+..-+..|.+.|.+...+++-.|++.+..|+.. +... ..++.-.-.++..|+ +..-.||+-|..-|-+|+..-..+
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~-davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSI-DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 3456667778888888899999999988888876 3222 334444777888898 899999999999999999988889
Q ss_pred hhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-hhhhHHHHHhhcCCCCh
Q 000156 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIAMTDKSS 1026 (2015)
Q Consensus 971 ~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~L~D~~~ 1026 (2015)
.++..+..+|.+. .+..|.++.--++-.-+++.++-. ..+.+.-++..-.|-+.
T Consensus 404 ~IV~elLqYL~tA--d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 404 QIVAELLQYLETA--DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 9999999999876 367888877665544444443322 23333334444444433
No 98
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=13 Score=50.57 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhHHH----HHHHHhh--c
Q 000156 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE----DVKTSVK--N 414 (2015)
Q Consensus 342 ~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~-~~~~l~~il~----~l~~~L~--~ 414 (2015)
+-.++..|+.+|..+|..|.+.....+=++++++.+....|++.+..|+.+++.+ +..+++.++. .+..++. -
T Consensus 565 ~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L 644 (1014)
T KOG4524|consen 565 VCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRL 644 (1014)
T ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHh
Confidence 3445788999999999999999999999999999999999999999999999987 2233555442 3333322 1
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCC
Q 000156 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (2015)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~ 458 (2015)
+...+-..+-..+..++...+.. ..+++++++..+.+.++--+
T Consensus 645 ~~~~~s~~~~~Vl~vVl~~s~~~-~i~~l~dvvq~i~~~lD~yH 687 (1014)
T KOG4524|consen 645 NTSGMSPRVPDVLMVVLQYSDYG-TIPNLKDVVQTIFKLLDYYH 687 (1014)
T ss_pred ccCCCCchhHHHHHHHhhcCCCC-chhhHHHHHHHHHHHHHHhc
Confidence 11111112223444444444333 23556777777777664333
No 99
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.35 E-value=0.55 Score=50.98 Aligned_cols=100 Identities=21% Similarity=0.351 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+...||.. +-.|...+. .. +..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~~----il~icD~I~---~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGL----ILDVCDKVK---SD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHH----HHHHHHHHh---cC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568843 334444443 11 23347899999999999999999999999999999999999754 466888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+.+.+.+ ....|++-+...+..|.....-+
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888 67889999999999999887633
No 100
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.32 E-value=0.06 Score=42.14 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1014 l~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
++.++++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999875
No 101
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=10 Score=51.58 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=61.5
Q ss_pred hhhccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc-hhhhHh
Q 000156 292 EGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRF 366 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~---l~-~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~ 366 (2015)
..+++++-..|.++|+-|.- ++ ..+...-.-.+...+.+..++.+.|.-++..|+.||..|+..-|.=. .++.+.
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34688999999999998754 23 33332222344555667778889999999999999999997655322 266777
Q ss_pred HHHHHHHHhccC
Q 000156 367 LLPVLLEKLKEK 378 (2015)
Q Consensus 367 llp~LL~klkdk 378 (2015)
++|.+-..|.+.
T Consensus 890 vlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 890 VLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHH
Confidence 888777666554
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=15 Score=48.28 Aligned_cols=307 Identities=17% Similarity=0.162 Sum_probs=177.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHh
Q 000156 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILK 171 (2015)
Q Consensus 94 v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~ 171 (2015)
|+..|-....+.++.-.-.|..|+-.+=+.+-.+.+.+.+-+.+- .--+=+..-+-.+|..+++.+ +..+++.....
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~ 190 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHH
Confidence 444444342333455556677766655555545555555544432 122334445556666677764 34678888899
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---Cccchh
Q 000156 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRA 239 (2015)
Q Consensus 172 ~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~---------~~P---~R~~rs 239 (2015)
.+..+|+|.+=.|-.++.+|+..|.++..+. .+. --+-++..|..-.-...-. +.| +..+|-
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 9999999999999999999999999888653 222 2233345554332221100 111 011121
Q ss_pred hhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhccCChHHHHH---HHHHHHHHhcCC
Q 000156 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTK 316 (2015)
Q Consensus 240 ~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~e---aL~~L~~l~~~~ 316 (2015)
-+.- |.. .+.+. -.--.+.. ..|+.|.. +.-.++|-+.+-. .|-+...++.+-
T Consensus 265 Lq~~------p~~--~D~~~---------r~~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 265 LQIY------PTP--EDPST---------RARLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred HHhC------CCC--CCchH---------HHHHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHc
Confidence 1110 000 00000 00000000 02222221 1123455554432 233333444333
Q ss_pred CCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcch-hhhHhHHHHHHHHhc-cCcHHHHHHHHHHHHHHH
Q 000156 317 RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 317 ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klk-dkk~~V~~aa~~aL~al~ 394 (2015)
.-.+.-+..-+..|.+.|.+...+++..|+.-+..|+.. .|. ..++.-.-.++..++ |+...||.-+...|-+++
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 333445677778888888866666888887777777654 443 234555777888898 999999999999999998
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000156 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 395 ~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2015)
.. .....|+++++..+.+-.+++|++...=++.+.++...
T Consensus 398 D~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 398 DV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred ch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 75 56788999999999999999999988777776666543
No 103
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.19 E-value=1.1 Score=56.64 Aligned_cols=202 Identities=17% Similarity=0.189 Sum_probs=130.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+-..++.+.++++-++|+..++-|.-+.. +-+.|....|.-|...|..|+-|..+.|+.+|+.++..+-.--+.+ +..
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 34467788999999999999998887775 3355655567778888899999999999999999999877444433 233
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCC--CChh
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1011 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~--~~~~ 1011 (2015)
...++-.++ -.|....||.+|.- +-.+..- ..|.|.+-..+- +..-|.-+...+ ++.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~all--ni~vdns----T~p~IlERarDv--~~anRr~vY~r~---Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLALL--NISVDNS----TYPCILERARDV--SGANRRMVYERC---LPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHHH--HeeeCCC----cchhHHHHhhhh--hHHHHHHHHHHH---hhhhcchhhcccc
Confidence 333333332 36888899999732 2222222 234444444432 344455555443 4444321 1223
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000156 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (2015)
Q Consensus 1012 ~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~ 1070 (2015)
..+.-+--.|.|+.-+||+++..++..-...--.-.+...+..|+-+..+.+..++++.
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334445899999999999998887544433333456677888877777666666654
No 104
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=13 Score=49.52 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHhccCCCCCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 987 AEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
..+|.++...|++... . ...+. .+..-+..|+.|++-+||+.|..++..+-
T Consensus 480 ~ivRaaAv~alaKfg~--~-~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGA--Q-DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhc--C-CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4678887777775441 1 12233 34444778999999999999999888765
No 105
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.15 E-value=23 Score=48.12 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=95.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~-~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ 940 (2015)
+.+++-+.|.+|+..+-..+... +++..++. .++... -.|..+....=-.+...++.-+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 67788899999988877666422 22344433 333334 3344444433333333332221 334566788
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhh--hHHHHH
Q 000156 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (2015)
Q Consensus 941 ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (2015)
+.+-|+|.++.+|..|+.+|..+-..-=++.+++.|...+.++ +|.+|..++--+.+.+.--.. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 8888899999999988888766522211233444455555555 578888877777766642211 1111 222344
Q ss_pred hhcCCCChHHHHHHHHHHHHHHH
Q 000156 1019 IAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 1019 ~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
..+.|.++.|-.+|..+|..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 45578888888887777766653
No 106
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.14 E-value=0.67 Score=49.73 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S-KGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~-~-~~llp 939 (2015)
+.+.+|. ++-+|..++.. . +..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... . +.++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3456885 45556666642 1 33347899999999999999999999999999999999999754 3 36777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000156 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 940 ~ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.+++.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46689999999999999988754
No 107
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.83 E-value=0.96 Score=55.21 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 870 RLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 870 R~eale~L~~ll~~a~~~I~~~----~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
-..|+|-.+.|.+ .|.+. ++.=....|...+.-+...|+-.-++++....--+|+.+.+.++.++..++..+
T Consensus 72 H~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 72 HQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGL 147 (307)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccc
Confidence 3446666666654 23322 122334556667788888999999999999998999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC------C--------CCChh
Q 000156 946 GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDAA 1011 (2015)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~------~--------~~~~~ 1011 (2015)
-|....+.+.+...++.+...+|-+-+...++-.+.+ +|..|..++.|+.+.++... . .++..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPG 224 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCcc
Confidence 9999999999999999999999988888888888764 47899999999999998866 1 12333
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 1012 ~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
-++..+..||+|.+-=|+..+-..| ..+++-
T Consensus 225 Llv~al~~~L~D~~iLVqR~~LDlL---l~~~PL 255 (307)
T PF04118_consen 225 LLVRALCACLEDENILVQRGFLDLL---LSHFPL 255 (307)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH---HHhCCC
Confidence 4556688899999988887765544 555553
No 108
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.44 E-value=1.1 Score=48.52 Aligned_cols=100 Identities=19% Similarity=0.341 Sum_probs=77.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 940 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp~ 940 (2015)
.+.+|. ..-.+..++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+..
T Consensus 18 ~~~dw~----~ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~ 88 (142)
T cd03569 18 GEPDLA----SILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE 88 (142)
T ss_pred CccCHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 455785 33445555542 1 22237899999999999999999999999999999999998753 4567777
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhcCchh
Q 000156 941 ILKCLG-DNKKHMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 941 ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
+.+.+. .....|++-+...+..|....+-+.
T Consensus 89 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 89 LKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 777776 4566799999999999999886443
No 109
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.38 E-value=0.36 Score=64.05 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhh----hcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000156 323 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR----THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 323 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~----~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~ 396 (2015)
|+++++.|...+. +... . +..+..|+..++ .-.-|....++|-||+.+.-....|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~--K---~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQ--K---HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccc--h---hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666666666554 1111 1 123333333333 224578889999999999999999999999999876654
Q ss_pred -c---CCChHhHHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 397 -G---CLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 397 -~---~~~l~~il~~l~~~L-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
+ +.+++-++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|+..-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 234566777776533 3554 57999999999988777887777788899999999999999999999999876
Q ss_pred HHHH
Q 000156 470 AAIA 473 (2015)
Q Consensus 470 ~~l~ 473 (2015)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5544
No 110
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.30 E-value=1 Score=48.28 Aligned_cols=101 Identities=22% Similarity=0.393 Sum_probs=76.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.+|. ..-.+..++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~----~~l~icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWE----LILEICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHH----HHHHHHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4456885 33445555532 2 23347899999999999999999999999999999999999754 355777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcCchh
Q 000156 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 940 ~ll~~L~D~k~--~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
.+.+.+.++.. .|++.+...+..|.....-++
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 117 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP 117 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777766432 399999999999999875333
No 111
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.27 E-value=2.3 Score=57.25 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHH
Q 000156 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 372 (2015)
+.+++=++|++|++.+.+ +..+. |...++.-+.|-+.--|..+....---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 677788899999998755 44433 35666665555555445445444433333333321 145778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (2015)
+-+.|+++.+|-.|..++..+=.. -=+..+++.|...+.|+++.||..++-.+..+++.-. .. +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1123456667788889999999999999998886422 11 1233 455677
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Q 000156 452 ECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 452 k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.++.|++|.|-.+|..+|..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999998888888766653
No 112
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.17 E-value=15 Score=44.12 Aligned_cols=186 Identities=11% Similarity=0.145 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000156 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~ 943 (2015)
+|..=..++..+..++. . +.+.+.....++..+.+.. ..--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~-~-~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK-M-KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh-C-cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455677777774 2 4455544456666665533 233445778888888888877666666666778888888
Q ss_pred HhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cCCC-Ch--hHHHHHHHHHHHHhccCCCCCChhh
Q 000156 944 CLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DAKL-GA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (2015)
Q Consensus 944 ~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~-------~~k~-~p--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (2015)
... ++.+-----+..-+..+.....++.+.+.+.+.+. .+.. +| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 774 55565555556666677777777777776666654 1110 11 35677777787777633 34555
Q ss_pred hHHH-HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000156 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (2015)
Q Consensus 1013 ll~p-l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~ 1056 (2015)
.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 5555 8889999999999999999999999999999988876553
No 113
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.06 E-value=0.5 Score=51.18 Aligned_cols=108 Identities=29% Similarity=0.510 Sum_probs=78.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~llp 939 (2015)
+.+.+|. ++-.|.++++. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556884 34445555542 2 33347899999999999999999999999999999999999764 355777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHHH
Q 000156 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVTT 978 (2015)
Q Consensus 940 ~ll~~L~D~k~--~--Vr~aa~~aL~~i~~~~gl~~ll~~l~~ 978 (2015)
.+.+.+.++.. . |++.+...|..|....+-+.=++.+.+
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~ 131 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQD 131 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHH
Confidence 77776665433 2 899999999999999864444444443
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.05 E-value=3.8 Score=48.87 Aligned_cols=302 Identities=16% Similarity=0.131 Sum_probs=168.1
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
|.+.+.+-+.+-.....|+-++++++.. .++.|++-.-.-+++-|...+ .-.+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4677777788888889999999999973 455666643344566666666 44455666777777888876554321111
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cCc------hhhHHHHHHHHhcCCCChhHH-HHHHHHHHHHhccC
Q 000156 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VHL------DKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGL 1004 (2015)
Q Consensus 934 ~-~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~-~gl------~~ll~~l~~~L~~~k~~p~~R-~~~l~~L~~~l~~~ 1004 (2015)
+ -.-+|.++..|.++...||+.+.=+|+.++.- .++ -..++.+...|.+.. +++. ..-+.|....+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 13578999999999999999999998877632 111 112333444444322 2222 33456655555432
Q ss_pred CC-CCCh---hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000156 1005 SG-FPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (2015)
Q Consensus 1005 ~~-~~~~---~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~ 1080 (2015)
.. .+++ ...++.+.+.+.-++++|-.-|.-++..+.- ...+.+... |+......+.+.+-....
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~sa-------- 299 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHESA-------- 299 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCccc--------
Confidence 22 3443 3445557788888888887766555543321 111222211 111111223333211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhh---------hcccCCCChHHHhhhhhcccc
Q 000156 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQA---------LLNVKDSNKEDRERMVVRRFK 1151 (2015)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~k~~R~~~~~~k~~ 1151 (2015)
.+.+++.|+. ....+ +.+.+++. ++.+.++.|+ ++|+.. =|.
T Consensus 300 -------------~iqtPalR~v--GNIVT------------G~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEa-CWT 350 (526)
T COG5064 300 -------------KIQTPALRSV--GNIVT------------GSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEA-CWT 350 (526)
T ss_pred -------------cccCHHHHhh--cCeee------------cCccceehheecccHHHHHHHhcChhh-hhhhhh-hee
Confidence 0111111110 00000 01122222 1223333333 554332 377
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCc
Q 000156 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (2015)
Q Consensus 1152 f~~p~~e~ve~L~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~ 1200 (2015)
...-+...+|+.+.-|..-+-+-|+..|-+.||+.+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6665566677888888888888899999999999999988877766544
No 115
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.47 E-value=18 Score=51.98 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchh------hhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000156 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2015)
Q Consensus 663 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K------~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2015)
.++++..++...-... ..+|..|+.+++.+. -+..|..++..++.+..+. +.+.+...+...+. . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6677776666432222 345555666665542 2455555666665554432 33333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc
Q 000156 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2015)
Q Consensus 737 ~~l~~L~~li~~fG~~~l-~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2015)
-.-.-.+++|-+.-.-.. -+-.+++.+..- |.+.+-.+|-.|..++|.|+...+..+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 111122233322211000 123577777665 8889999999999999999865442210 0 0
Q ss_pred CCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000156 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (2015)
Q Consensus 816 ~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 895 (2015)
...+-..|+..+.|..-.+|.++++....++.. ++.+... ..
T Consensus 298 -----------------------------------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 001335788899999999999999999998863 2322221 34
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000156 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 896 L~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2015)
+..+|+.+..|.+..++...+.....++ .-.+ .+...++-.+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5666677777877777654433222211 1111 22233677778899999999999999999999985
No 116
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=4.8 Score=52.29 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=121.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhChhHHh-hhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCC
Q 000156 767 GLQSSAAATRNATIKLLGALHKFVGPDIKG-FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (2015)
Q Consensus 767 gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~l 845 (2015)
||+.+|.+||..|..++..+|-..|++... -++. .+++.|.
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~-------i~~kQf~------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDS-------IIQKQFE------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHHHHHH-------HHHHHHH-------------------------------
Confidence 489999999999999999999888887531 1111 1122221
Q ss_pred CCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHH
Q 000156 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 846 prvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-~DsN~~V~~~Al~~l~~La~ 924 (2015)
.+++.++|.--.+|-+|++.+.++...-=.-|.++...+++..+..-+ .|+-..|+....+.+..|+-
T Consensus 224 -----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 224 -----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred -----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 344555666667899999999888864322344555556665555544 68888999999998888763
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--cCchhhHH--HHHHHHhcCCCChhHHHHHHHHHHHH
Q 000156 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (2015)
Q Consensus 925 alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~--~gl~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~ 1000 (2015)
.+...+.++.++|.+=-.|.|+...||-|+...|-.+-.+ ...-.+++ .+..-|..++ .+..|.-+.-.+..+
T Consensus 293 --np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 293 --NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSF 369 (1005)
T ss_pred --CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhh
Confidence 3555677889999999999999999999998888765432 23333433 3455555443 244444444444444
Q ss_pred hc
Q 000156 1001 LT 1002 (2015)
Q Consensus 1001 l~ 1002 (2015)
|+
T Consensus 370 lP 371 (1005)
T KOG1949|consen 370 LP 371 (1005)
T ss_pred cC
Confidence 43
No 117
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.89 E-value=2.2 Score=50.84 Aligned_cols=304 Identities=14% Similarity=0.135 Sum_probs=164.3
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHh--ccccchHHH--HHHHHHhcCCCCcccHH---HHHHHHHHHHHHHHHHcCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEA--VQNLDQSVE--ILVRLVCMLPGWSEKNV---QVQQQVIEVINYLAATATK 676 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~--~~~~~~~~~--~Lv~~L~~~pg~~DsN~---qV~~~~Le~l~~l~~~~~~ 676 (2015)
+.+.++|.|.+....+.|+-.+.+++.. ..+.+...+ ++.|+.. |-|.+. --++++. +++.++.....
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfve----fm~~~q~~mlqfEAaW-alTNiaSGtt~ 148 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVE----FMDEIQRDMLQFEAAW-ALTNIASGTTQ 148 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHH----HHHhcchhHHHHHHHH-HHhhhccCccc
Confidence 7888999999999999999999999865 233322211 2223221 122111 1111111 22333321111
Q ss_pred CchhHH-HHHHHHHHhhhcch--hhhHHHHHHHHHHHhhhC--hhHH-----HHHHHHHhhhCCC-hhHHHHHHHHHHHH
Q 000156 677 FPKKCV-VLCLLGISERVADI--KTRAHAMKCLTTFSEAVG--PGFI-----FERLYKIMKDHKN-PKVLSEGILWMVSA 745 (2015)
Q Consensus 677 ~~~~~~-~~il~~LveKlgD~--K~r~~a~~~L~~l~e~~~--~~~V-----l~~L~~~l~~~Kn-pKv~~~~l~~L~~l 745 (2015)
-++-.+ ...+|.++.-|.++ -+|+++.=+|..++.-.. -++| ++.++..+..++. -+...-+-..|+++
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 111111 23467777766664 478888878877765321 1233 3334444322221 23333444456666
Q ss_pred HHHhCCC--CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh-hhccHHHHHHHHHHHhcCCCCCCC
Q 000156 746 VEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNPFEGTV 822 (2015)
Q Consensus 746 i~~fG~~--~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkp~ll~~Le~ef~k~~~~~~p 822 (2015)
...-... --++...++.+.++ +-..+++|-.-|.-++.+|.......+...+ ..+++.+++.|..+-.++.. |
T Consensus 229 cRGknP~P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt--P- 304 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT--P- 304 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--H-
Confidence 5422211 12356678888888 8888998888887777766543333344444 34566666666554444321 1
Q ss_pred CCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000156 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (2015)
Q Consensus 823 ~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~ 902 (2015)
..|-+-. - ..|.|.-..+-|..-..+.|...+++++-.+|+||--.+..|-.+....|+.-.-.+|++.|..
T Consensus 305 -alR~vGN------I-VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 305 -ALRSVGN------I-VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred -HHHhhcC------e-eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 1121100 0 0112222222232223456777788888899999977776665432223333222567888889
Q ss_pred ccccchHHHHHHHHHHHHHHHH
Q 000156 903 RLYDSNKNLVMATLITLGAVAS 924 (2015)
Q Consensus 903 rL~DsN~~V~~~Al~~l~~La~ 924 (2015)
.|+-..-.+...||=++.....
T Consensus 377 lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888999999987766543
No 118
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.86 E-value=1.3 Score=46.07 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHH-----H
Q 000156 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 944 (2015)
Q Consensus 872 eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~-----~ 944 (2015)
..+..|..++.+ .+....+++.+|.+||.+.|+.++..||.++..+++..|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 455566666542 133468999999999999999999999999999999999999876533 3333332 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000156 945 L-GDNKKHMRECTLTVLDAWL 964 (2015)
Q Consensus 945 L-~D~k~~Vr~aa~~aL~~i~ 964 (2015)
. .+....||+.+...+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
No 119
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.65 E-value=51 Score=42.48 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHh--hhcc-hhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHH---HHHHHHhhcCCh-
Q 000156 345 AIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP- 417 (2015)
Q Consensus 345 A~~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il---~~l~~~L~~Knp- 417 (2015)
|-.+|..|+..+ |+.| +..+..++=++++.|..+....|++.--++..+..- + ++++ ..|..-++.+.+
T Consensus 41 ~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~~ 116 (898)
T COG5240 41 ARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVPD 116 (898)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCcc
Confidence 445666666654 5678 678999999999999999999999999999888653 1 3333 344455566777
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.+|-.++.-|.+.+..... ..+-..+..+.-|+.+.+|.+|. ..-+..++.
T Consensus 117 ~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal---v~aYhLlp~ 167 (898)
T COG5240 117 DVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL---VVAYHLLPN 167 (898)
T ss_pred ccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH---HHhhhhccc
Confidence 7888888888777654332 33444567788899999998875 333444443
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.04 E-value=2.4 Score=52.16 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhchhhhh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000156 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (2015)
Q Consensus 71 ~~leal~~~l~~~~~~~~~--~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~--~~~v~~~L~~~~~~KnpKv~ 145 (2015)
+.|..+...+++...+... ....++..||-.++. ..+.+|+.|..|+=.++=++. ....+..+...+....+.+.
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533322 234788888888776 578999999999888886643 44556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcCh----------hHHHhhhhhhhcCCChhHHHHHHHHHHHHH
Q 000156 146 VPAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (2015)
Q Consensus 146 ~~~l~~L~~~l~~fG~~~i~~----------k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2015)
..|+.++.+++..||...+.- ..+++.+.+.+.+.++.||..|..-+..|.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999876532 358899999999999999999988888776
No 121
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.94 E-value=1.6 Score=48.41 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000156 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~--~~ 397 (2015)
.+|.+|+..|.+.++ +.+..++.++++++|.|+. .+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 468999999999998 8779999999999999873 34443332111111 100 01111111111111 10
Q ss_pred CCChHhHHH-----HHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVE-----DVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 398 ~~~l~~il~-----~l~~~L~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
..+.++..+ .+...|++++ ..-...+++.+..+|...+... ..+++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123344433 3444555544 4555567777777776655544 57789999999999999999999999988888
Q ss_pred HHHHhC
Q 000156 472 IAKSVG 477 (2015)
Q Consensus 472 l~~~~G 477 (2015)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 887653
No 122
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=5.8 Score=48.57 Aligned_cols=175 Identities=19% Similarity=0.213 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH-HHH
Q 000156 864 SPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLS 939 (2015)
Q Consensus 864 d~~Wk~R~eale~L~~ll~~---a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~-llp 939 (2015)
+.+-..|..|++.|+.++.. |+..+. +|-+...|. .+++++..|+..|+.+|+..+..=.+--+...+. .+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 33567788999999999874 322222 244455555 8999999999999999998886544333333222 667
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhc--CchhhHH-----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCC-h
Q 000156 940 DILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1010 (2015)
Q Consensus 940 ~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~--gl~~ll~-----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~-~ 1010 (2015)
.++..|. |..-.+|..|.-|+..++++- |.+.++. .+.++|+++..+...+.-++..+...+.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777776 444568899999999999885 4566655 57888887544566777777777777765543222 1
Q ss_pred hhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1011 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1011 ~~ll~p--l~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
..+..+ +.....--+.+++.++..++-.+...
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 222111 22222333445666666555544433
No 123
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.74 E-value=7.5 Score=47.65 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=110.5
Q ss_pred ccCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhc-chhhhHhHHH
Q 000156 295 KATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLP 369 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp 369 (2015)
..+.|.+-...|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|-..|+.+.+.+.+.++.+ +........|
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 36899999999999988775 333322 334578889999998 777789999999999999888754 3444444555
Q ss_pred HHHHHhccCcHHHHH-----------------------------------------HHHHHHHHHHHhcCCChHhHHHHH
Q 000156 370 VLLEKLKEKKPTVAE-----------------------------------------SLTQTLQAMHKAGCLNLVDVVEDV 408 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~-----------------------------------------aa~~aL~al~~~~~~~l~~il~~l 408 (2015)
+|+.-+.-....|+- .+...++.+... ++-+-+...+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~~~~F~~~l 178 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VGDKYFWQCL 178 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cChhHHHHHH
Confidence 555544444444443 333333333221 1111122222
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000156 409 KTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (2015)
Q Consensus 409 ~~~L~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~ 471 (2015)
..++- .+|.+|..++.|+.+-+.... ...+...-..++.++..+++|.+--|+..+.+.|..
T Consensus 179 wl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 179 WLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22221 578999999999988776543 111112235688899999999999998877776653
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.68 E-value=1.7 Score=48.97 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHHhhhHHHHHH------------HHHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000156 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI------------LKCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~al-g~~f~~~~~~llp~l------------l~~L~D~k~~Vr~aa~~aL~~i~~~~g-------- 968 (2015)
+|++.|+.+++.+++.. ++.|..|-..|+|.- .-.+.|...-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 566778888888855 335679999999999999999987542
Q ss_pred --------------chhhHH----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC---CCC-hhhhHHHHHhhcCCCCh
Q 000156 969 --------------LDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASIAMTDKSS 1026 (2015)
Q Consensus 969 --------------l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~---~~~-~~~ll~pl~~~L~D~~~ 1026 (2015)
+..++- .+..+|+.++ ++..-..+++-++..+...+- ..+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 111111 2344455443 345555677777766665543 223 34455557777889999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000156 1027 DVRKAAEACIVEILRAG 1043 (2015)
Q Consensus 1027 ~VR~aA~~~L~~l~~~~ 1043 (2015)
+||.++..|++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999886543
No 125
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.59 E-value=1.3 Score=49.71 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=71.7
Q ss_pred ChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHh
Q 000156 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (2015)
Q Consensus 400 ~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l---~~~~ 476 (2015)
....++|.+.++|..+.-.-+--+.+-+..+++......+.++++++++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3456789899999876655555555555666665444557788999999999999999999999999999999 7889
Q ss_pred CchHHHHHHHhccH
Q 000156 477 GMRPLERSIEKLDD 490 (2015)
Q Consensus 477 Ge~~~~~~l~~Ld~ 490 (2015)
|+ ++.||+.+|-+
T Consensus 115 G~-aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GE-ALVPYYRQLLP 127 (183)
T ss_pred hH-HHHHHHHHHHH
Confidence 96 48899887754
No 126
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.34 E-value=0.87 Score=59.46 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=129.0
Q ss_pred cccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhh
Q 000156 852 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (2015)
Q Consensus 852 ~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f 930 (2015)
..+.+-+++.++..+-.+|.--|+.+.+.+. .+.+.. -..+++.+..-+.|.|..++.++++++..||..+++.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 3456678888899999999999888888875 455432 2578899999999999999999999999999999887
Q ss_pred HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC
Q 000156 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (2015)
Q Consensus 931 ~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl---~~ll~-~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~ 1006 (2015)
..-..++-.+-..-.|....+|+-..-||..+...+.. ..++. .+..+++++- .|.-..+++.+.+ ..++..
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccc
Confidence 33345566666666688889999999999988877531 22333 3455676652 2333344544443 222222
Q ss_pred CCChh-hhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh
Q 000156 1007 FPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 1007 ~~~~~-~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~ 1045 (2015)
..++. .+++-+...+.|.+..||..|..++..+....-.
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 22333 3333366667999999999999988776655443
No 127
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.26 E-value=0.98 Score=60.18 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=106.7
Q ss_pred ccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChh
Q 000156 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (2015)
Q Consensus 851 s~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~-~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~ 929 (2015)
...+-|.+.+.+....--+|-.=++.|..++..-.+ -+.|. +..|++.|.+.|+=....|+..+++++..+..-.+.-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 344556666666644444555566777777764322 23344 5889999999998788888899999999999999999
Q ss_pred hHHhhhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCCCChhHHHHHHHH
Q 000156 930 VEKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDW 996 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D~k---~~Vr~aa~~aL~~i~~~~gl-------~~ll~~l~~~L~~~k~~p~~R~~~l~~ 996 (2015)
...|+..++|.++..-.|++ ..||..|.+||+.+.+.++. +.++-.+.+.|.|+| --+|.++..-
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK--RlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK--RLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH--HHHHHHHHHH
Confidence 99999999999999888877 67999999999999997763 344455666666765 2567776543
No 128
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=3.3 Score=49.91 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=112.6
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
+.+.+++.+.|.+-|++..|--.|+.+...- ..+.+-.-..-++.|...|.|.-...+....-||..|+..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4567888888889999888888887776431 111110001123455666788888888888888888876655442111
Q ss_pred hhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 000156 934 SKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~~g--l-----~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~ 1005 (2015)
-..|+.+++..|.-.. ..+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. -.++.++-.-++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 1246667777665333 3366677788888776431 1 223456666766653 3556655554443211111
Q ss_pred CCCCh--hhhHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000156 1006 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1006 ~~~~~--~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
....+ .-+++.++..+.|.+.+||.+|.++|..|...
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 11111 23445577788999999999999999877543
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.91 E-value=26 Score=47.28 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=122.6
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC-CCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhh
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~-~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (2015)
++..+..+ ..+-+-++.+++..|..+++..... .+....++..+... +.|.|+-|==.|++.++.|......++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 4667778999999999999854222 23455688888888 999999999899996666655444332
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHH
Q 000156 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (2015)
Q Consensus 798 L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L 877 (2015)
-|.+.+..+.+-.+.+ .| ...|. =|.+
T Consensus 804 ----l~dL~e~Y~s~k~k~~------------------------------~d-----------------~~lkV--GEai 830 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ------------------------------TD-----------------YRLKV--GEAI 830 (982)
T ss_pred ----HHHHHHHHHhcccCCC------------------------------cc-----------------ceehH--HHHH
Confidence 2222222222211110 00 00000 0233
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHH
Q 000156 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 956 (2015)
Q Consensus 878 ~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L-~D~k~~Vr~aa 956 (2015)
.+++..- +.+....++-|...+...+.|+....+..+|..+|.++.........++-.++..++... .|....||.||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333321 122222245666777777788888899999999999998886544445556666665544 58889999999
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 000156 957 LTVLDAWLAAVHLDKMVPYV 976 (2015)
Q Consensus 957 ~~aL~~i~~~~gl~~ll~~l 976 (2015)
...+..+...+| ..++|.+
T Consensus 910 v~li~~lL~~tg-~dlLpil 928 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPIL 928 (982)
T ss_pred HHHHHHHHhccc-hhhHHHH
Confidence 999999888888 3334433
No 130
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.78 E-value=4.4 Score=49.78 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=91.2
Q ss_pred HHHHHHhhhcchhh--hHhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000156 350 GNLARGLRTHFSGS--SRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2015)
Q Consensus 350 ~~La~~L~~~f~~~--~~~llp~LL-~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~ 426 (2015)
..+-+.....+.+. ...++..++ ..+..+.+.||+.+..||.-++-.+.......++-+...++.....+|..+++.
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333333344442 336666655 556777889999999999877654212234566777777876789999999999
Q ss_pred HHHHHHhcChhHHHHh--------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 427 VTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 427 L~~~l~~~~~~~l~~~--------l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 88 l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 88 LFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999988876544322 257888999999999999999999999988744
No 131
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=9.5 Score=50.90 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhH-hHHHHHH
Q 000156 298 KWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (2015)
Q Consensus 298 kWkeR~eaL~~L~~l~~--~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 372 (2015)
+-..-.+|+.+|..++. +..-.. --...+++.|.++++ +.|.-+...||+||.+|+..+.....-.+. ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877552 222222 224689999999999 889999999999999999999877654333 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhHHH-----HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000156 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVE-----DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (2015)
Q Consensus 373 ~klkd-kk~~V~~aa~~aL~al~~~~~~~l~~il~-----~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (2015)
+||-. .=-.|.+.+-+||..|-+. +..+|+. ..+..++==.-.+.+.++...+.|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 3445777777787777653 3334432 122222222223445566666666666555443 334667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 447 ~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
+|.|...|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888887888888876665543
No 132
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=89.62 E-value=2.3 Score=46.09 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=76.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHH
Q 000156 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2015)
Q Consensus 862 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~ll 938 (2015)
+...||.. .-.|.++++. . ...-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|... .+.|+
T Consensus 14 l~~~dw~~----ileicD~In~--~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGL----NMEICDIINE--T---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHH----HHHHHHHHhC--C---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 34558854 3334444431 2 2224789999999997 4699999999999999999999999864 35677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 000156 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLDKMVPYV 976 (2015)
Q Consensus 939 p~-ll~~L~D---~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l 976 (2015)
.. +++.+.+ ....|+.-+...+..|.....-+.=++.+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 126 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGV 126 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence 76 6777754 33579999999999999887644333333
No 133
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.56 E-value=1.6 Score=47.33 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhc-CCChhHHHHHHHHHHHHHHHhC
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (2015)
++...+..|.+.+.++||+++.-++..|-.++++=|... +.-+.|+..|.+++. +.+..||+.+..++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 467888999999999999999999999999999877632 344778888999886 6789999999999988887776
Q ss_pred C
Q 000156 201 K 201 (2015)
Q Consensus 201 ~ 201 (2015)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
No 134
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.51 E-value=1.3 Score=57.79 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y--~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 364 (2015)
.|++.+.-+.=.||.+-...|...+ +..+.++ ..+...|...+. |+...+..-.+.+-..+.. ..|-
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~------~eyq 328 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE------EEYQ 328 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc------cccc
Confidence 3555555555556655444444322 1222222 344455555444 5333333333332222221 2588
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh
Q 000156 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (2015)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (2015)
..++|.|++.|+-....||--+-.=+..++.+- ..-.+.|+|.+..++.+.|+.+|..|+..+..++...++..+.
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln-- 406 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN-- 406 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc--
Confidence 889999999999999999988877777777761 1123578999999999999999999999999888776655432
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 443 l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
-+++..+.++-.|.++..|....-|++.+.
T Consensus 407 -~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 -GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred -HHHHHHHHhhCccccCcccccceeeecccc
Confidence 334445555555666666555555554433
No 135
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.35 E-value=73 Score=40.53 Aligned_cols=313 Identities=14% Similarity=0.156 Sum_probs=167.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCC-CCchHHHhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000156 20 LLHKNWKVRNEANIDLAALCDSITD-PKDNRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (2015)
Q Consensus 20 l~~k~WK~R~~ayeeL~~~~~~~~d-~~~~~~~~~~~~----~~k~v~D-------sN~~vqe~~leal~~~l~~~~~~- 86 (2015)
|.+.+=-.|.+||-.|...++.... ++.....+..++ ++.=+.. -+...-..||.++..|+-.....
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4555667899999999999976532 222223332222 2222222 25566678899988888553221
Q ss_pred -hh-hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000156 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (2015)
Q Consensus 87 -~~-~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~---------~~~~~v~~~L~~---~~~~KnpKv~~~~l~~L 152 (2015)
.. .....++...++..-. ...-|..+...+-.+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~-~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQN-PNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 11 1122244444444222 122233343333322221 112223332221 12233 4788999999
Q ss_pred HHHHHHhCCCC-cChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 153 FQALSEFGAKI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 153 ~~~l~~fG~~~-i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
..++.+|...- ......++.+...+-|..+.||..|..+..++-..+|++ ..+. +.+.+.++..-
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~--- 224 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSL--- 224 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhcccc---
Confidence 99999986632 234456777777778999999999999999998888863 1111 11111111000
Q ss_pred CCCccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhhcc-CChHHHHHHHHHHH
Q 000156 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVAELT 310 (2015)
Q Consensus 232 ~P~R~~rs~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWkeR~eaL~~L~ 310 (2015)
.+.++. + .+. +.+.+.+.+ ++++.=-..--.+.
T Consensus 225 ~~~~~~------------------------------------------~---~~~-~~L~~mi~~~~~~~~a~~iW~~~i 258 (372)
T PF12231_consen 225 ENGKLI------------------------------------------Q---LYC-ERLKEMIKSKDEYKLAMQIWSVVI 258 (372)
T ss_pred ccccHH------------------------------------------H---HHH-HHHHHHHhCcCCcchHHHHHHHHH
Confidence 000000 0 000 111111222 11111111112223
Q ss_pred HHhcCCCCCC-CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---hhhhHhHHHHHHHHhccCcH-----H
Q 000156 311 KLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP-----T 381 (2015)
Q Consensus 311 ~l~~~~ki~~-~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klkdkk~-----~ 381 (2015)
.++..+.+.. ..+.+.+....+++++.+..+...|..+=..+.-.+..+- ....+.++.++.-.++.++. .
T Consensus 259 ~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~ 338 (372)
T PF12231_consen 259 LLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEE 338 (372)
T ss_pred HHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHH
Confidence 3444443444 3457888999999999999999999999888888665442 34566677777777655432 4
Q ss_pred HHHHHHHHHHHHHH
Q 000156 382 VAESLTQTLQAMHK 395 (2015)
Q Consensus 382 V~~aa~~aL~al~~ 395 (2015)
++..+..++..++-
T Consensus 339 ~~~~ll~~l~~lly 352 (372)
T PF12231_consen 339 VWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHhchHH
Confidence 56666666665553
No 136
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.08 E-value=5.2 Score=47.78 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=110.7
Q ss_pred hhhhcCCChhhhh-cCCChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHh-hhcC-CcHHHHHHHHHHHHHHHHHhc
Q 000156 8 LKEAKKLPWEDRL-LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK-TVAD-SNAPVQDKALDALIAYLKAAD 84 (2015)
Q Consensus 8 ~~~~~~lpl~erl-~~k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k-~v~D-sN~~vqe~~leal~~~l~~~~ 84 (2015)
..|+-.+|+...+ .+++-+.|..|...|.+.-.. .++......|...+.+ .+++ -|-.+|..||.+|..+--..
T Consensus 50 Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~- 126 (254)
T PF04826_consen 50 IRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN- 126 (254)
T ss_pred HHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-
Confidence 3455666665554 468889999998888765322 2333344556555544 3443 48899999999988773111
Q ss_pred hhhhhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh------hhHHHHHHHHhhcCCh-hhHHHHHHHHHHHH
Q 000156 85 ADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV------DVFLDVMEKAIKNKVA-KAVVPAIDVMFQAL 156 (2015)
Q Consensus 85 ~~~~~~~~~v~~~LieK~l~-~k~~~k~~a~~~ll~~~E~~~~------~~v~~~L~~~~~~Knp-Kv~~~~l~~L~~~l 156 (2015)
+.-......++.++. +|. +...+|..+..+++.+.+-... ..+...+..-|..+.+ .+...++.++..+-
T Consensus 127 -~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 127 -DYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred -chhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 111112334555553 343 6788999999999888865321 2344555555666544 45677777777777
Q ss_pred HHhCCCCc-----------------ChhHHHhhhhhhhcCCChhHHHHH
Q 000156 157 SEFGAKII-----------------PPKRILKMLPELFDHQDQNVRASS 188 (2015)
Q Consensus 157 ~~fG~~~i-----------------~~k~il~~l~~ll~~~d~~VR~~a 188 (2015)
+.+..... ..+.+-+.|..+..|+|+.||+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 205 ENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 77766421 124467788899999999999863
No 137
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.90 E-value=70 Score=40.64 Aligned_cols=169 Identities=19% Similarity=0.138 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
++--+|.+|+.-++.++.-. +....- -..++.++.....+.+-..+..++.++.+++-. .+++--++.. +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCC-HHHHHHH
Confidence 45678999999999999741 111111 156788888888888889999999999998843 2333223222 3666777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----CCChh-HHHH-HHHHHHHHhccCCCC----
Q 000156 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRKD-LFDWLSKQLTGLSGF---- 1007 (2015)
Q Consensus 945 L~D~k~~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~-----k~~p~-~R~~-~l~~L~~~l~~~~~~---- 1007 (2015)
+.|....+.++...++-.++..-. .+.-++.+...+.+. +.+.+ .|.. ...-+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777554577777777777765432 122233344333322 11121 2433 333455567777652
Q ss_pred CChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 1008 PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1008 ~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
.+-..-++.++.+|.-++.++|+..-..+-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 121256777888898899999988765553
No 138
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=5.2 Score=57.12 Aligned_cols=202 Identities=11% Similarity=0.065 Sum_probs=137.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
.+++.+.-++-..|..|++.+.+++...+.......++.....+.+...|-+..|+.++..++..+.+.+++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56788888899999999999999997432222222245666777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--------chhhHHHHHHHHh--cCC------C---------ChhHHH
Q 000156 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--------LDKMVPYVTTALT--DAK------L---------GAEGRK 991 (2015)
Q Consensus 937 llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--------l~~ll~~l~~~L~--~~k------~---------~p~~R~ 991 (2015)
++|.++-..-|....|..+|.+........-. -..+++.+.+.+. ++. + ..++-.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ 204 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVIS 204 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHH
Confidence 99999999999999999999888876553211 0222333333321 110 0 023334
Q ss_pred HHHHHHHHHhccCCCCCC-------hhhhHHH--HHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000156 992 DLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (2015)
Q Consensus 992 ~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~~L~~~ 1058 (2015)
..+..+...+...+...+ .+.+... +.+.+.++++.||.+..+++-.+...+....|....+.++++
T Consensus 205 ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~ 280 (1312)
T KOG0803|consen 205 SSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV 280 (1312)
T ss_pred HHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence 455555555543333211 2223322 666789999999999999998887776655444444444443
No 139
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=1.1e+02 Score=41.42 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhhcchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHhh-hCCChhHHHHHHHHHHHHHHHhCC--
Q 000156 681 CVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGV-- 751 (2015)
Q Consensus 681 ~~~~il~~LveKlgD~K---~r~~a~~~L~~l~e~~~~~~V---l~~L~~~l~-~~KnpKv~~~~l~~L~~li~~fG~-- 751 (2015)
.++..++.|+|++-... -|..|...|.+++..+..... +..++..+. +-.+|.....+|..+..++..=..
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 45667888888877753 266777778877776543321 112222221 234566666666666555532100
Q ss_pred -----C-C-----------CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 752 -----S-H-----------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 752 -----~-~-----------l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
. . +.-+..|..+... ++.-|-.||..|++++..+-.+-|..++..+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0 0 1113466666666 8888999999999999999998888776654
No 140
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.85 E-value=7.6 Score=42.28 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~L~D-s~~~VR~aA~~al~~l~~~ 475 (2015)
..+..+.+..|..-++++||.+-..+|..|..|+.+|+...... .-+.++..+.+++.+ .+++||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35566777778888889999999999999999999998753221 247788889999988 8999999999999999888
Q ss_pred hCch
Q 000156 476 VGMR 479 (2015)
Q Consensus 476 ~Ge~ 479 (2015)
++..
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
No 141
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.31 E-value=10 Score=48.62 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=105.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-hHHHHHHHH---HHHHHHHHHhCh----h
Q 000156 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATL---ITLGAVASAMGP----A 929 (2015)
Q Consensus 858 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-N~~V~~~Al---~~l~~La~alg~----~ 929 (2015)
+.+.+-+.+-..|.+||+.|+. ...++.|++.|...+.+. ..+|++.-+ ..+-.++.++=. .
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3455666888999999888862 122578888888888654 333333222 233334444422 3
Q ss_pred hHHhhhHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCChhHHHHH
Q 000156 930 VEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKDL 993 (2015)
Q Consensus 930 f~~~~~~llp~ll~~L~D----------~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k~~p~~R~~~ 993 (2015)
+++|+..++|.++.|+-. +.=.+|+-|...+..++...+ + .+++..+..++.+.+.......++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 789999999999998853 344599999999999998876 2 345556666666654345566777
Q ss_pred HHHHHHHhccCCC---CCChhhhHHHHHhhcCCCChH---HHHHHHHHHHHHHHHcCh
Q 000156 994 FDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSD---VRKAAEACIVEILRAGGQ 1045 (2015)
Q Consensus 994 l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~~---VR~aA~~~L~~l~~~~G~ 1045 (2015)
+..|.+.-...-. .+.+.....-+...+.+.+.. ....|..+...+..+.+.
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 7776643221111 122222222233334333332 255566666666655554
No 142
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.29 E-value=1e+02 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHhhhCCChhHHH
Q 000156 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (2015)
Q Consensus 659 V~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD--~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~ 736 (2015)
..+.+|+.|+.+++.| .+..+.-.++.-||. ++. -.|..-+.+++..+ --.|.-||+
T Consensus 447 skEraLe~LC~fIEDc------ey~~I~vrIL~iLG~EgP~a--------------~~P~~yvrhIyNR~-iLEN~ivRs 505 (898)
T COG5240 447 SKERALEVLCTFIEDC------EYHQITVRILGILGREGPRA--------------KTPGKYVRHIYNRL-ILENNIVRS 505 (898)
T ss_pred HHHHHHHHHHHHHhhc------chhHHHHHHHHHhcccCCCC--------------CCcchHHHHHHHHH-HHhhhHHHH
Confidence 4466777777777764 122333334433443 111 12334445555543 246778999
Q ss_pred HHHHHHHHHHHHhCCCC---CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 737 EGILWMVSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 737 ~~l~~L~~li~~fG~~~---l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+++.+|++ ||... +..+.+...++.+ +.|.+.+||+-|.-++..|-
T Consensus 506 aAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 506 AAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 99887755 55432 3356677778885 99999999999998887765
No 143
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.21 E-value=55 Score=41.53 Aligned_cols=93 Identities=6% Similarity=0.115 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHHHHhccc---cCCC-CChhhHHHHHHhc----cc---cchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 865 PDWKVRLESIEAVNKILEEANK---RIQP-AGTGELFGGLRGR----LY---DSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 865 ~~Wk~R~eale~L~~ll~~a~~---~I~~-~~~~eL~~~L~~r----L~---DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+|+.+..|+..+..+...... .+.. +..-++...+..- |. +....++..||+.+..+...+.+ ..
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~ 343 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQ 343 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HH
Confidence 4799999999998888753211 1111 1122344444332 22 45667889999988887777654 46
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000156 934 SKGVLSDILKCLGDNKKHMRECTLTVL 960 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k~~Vr~aa~~aL 960 (2015)
+..++|.++..|+++...|+..|..|+
T Consensus 344 l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 778999999999999999999987765
No 144
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=3.1 Score=53.34 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=82.5
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHH
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~--~~~ll 938 (2015)
.+.+.||-.=.+ |.++|+. ..-. -.+.+.+|++|++..|..|+..||.+|..+++.+|..|... -+.|+
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 466779965433 5555542 1111 26899999999999999999999999999999999999843 35689
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHHHH
Q 000156 939 SDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPYVT 977 (2015)
Q Consensus 939 p~ll~~L~D~--k~~Vr~aa~~aL~~i~~~~gl-~~ll~~l~ 977 (2015)
.-++...+.+ ...||+-+...|++|...++- +.-+|.+.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~ 125 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYY 125 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHH
Confidence 9988888876 456999999999999988753 44444433
No 145
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.87 E-value=35 Score=42.11 Aligned_cols=180 Identities=12% Similarity=0.159 Sum_probs=112.6
Q ss_pred ccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHH
Q 000156 295 KATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLP 369 (2015)
Q Consensus 295 ~s~kWkeR~eaL~~L~~l~~----~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp 369 (2015)
.+..-.+|.+|++.|..++. +..+.+ .+-+...+. .+++++..|+..|+.+|+..+..--+.=+.. =...++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 56778889999999988873 222222 233444444 8889999999999999999886432210100 012566
Q ss_pred HHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhHH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhH-HH
Q 000156 370 VLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAA-VL 440 (2015)
Q Consensus 370 ~LL~klk-dkk~~V~~aa~~aL~al~~~~~~~l~~il-----~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~-l~ 440 (2015)
.|+..+. +....++..+--|+.+++.++......++ ..|..++++ .+.+.|.-++.++..++....... +.
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777774 45556788999999999988322223332 456677886 668888889999998887653221 11
Q ss_pred HhhhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 441 KVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 441 ~~l~~l~p-~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
. ....+ .+.....--+-++++++..++-.+......+
T Consensus 250 ~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 250 S--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred H--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 1 11112 2222333445577888887777776665443
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=1.4e+02 Score=40.56 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=56.2
Q ss_pred HHHHhhhcchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 000156 687 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLID 761 (2015)
Q Consensus 687 ~~LveKlgD~K~r~~a~~~L~~l~e~~----~~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l-~~k~li~ 761 (2015)
..|++-+-|--....+...|..+..-. .|..-+..++..+ --.|..||.++...|.++. .... ....+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 333444444333444444444443321 2333333444332 2467889999998876654 3322 2345666
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 762 FCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 762 ~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
.++.+ +.|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 77775 99999999999998887775
No 147
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.09 E-value=2e+02 Score=41.95 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=149.6
Q ss_pred HHHhhhh--hhhcCCChhHHHHHHHHHHHHHHHhCCchhhHHHhhhChHHHHHHHHHHHHh----cCCCCCCCccchhhh
Q 000156 168 RILKMLP--ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVN----VSGTARPTRKIRAEQ 241 (2015)
Q Consensus 168 ~il~~l~--~ll~~~d~~VR~~a~~l~~ely~~lG~~~l~~~l~~~Lk~~q~keLe~~f~k----~~~~~~P~R~~rs~~ 241 (2015)
|+..+|. .+|.|+|+.||--..-++.+|.|-.-+++ ++ ...|++++-..|-+ +.....|. |.|-..
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea--Py-----~~~~lkdIf~~~~~q~~gL~d~~sp~-f~r~~~ 119 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA--PY-----TDEQLKDIFQLILSQFSGLGDVESPY-FKRYFY 119 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC--CC-----cHHHHHHHHHHHHHHHhhccCCCCcc-hhhHHH
Confidence 4444444 47999999999999999999999998753 32 12366666555433 32222221 222111
Q ss_pred hHhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCcchhhhhhh---ccCChHHHHHHHHHHHHHhcCCCC
Q 000156 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV---KATKWSERKDAVAELTKLASTKRI 318 (2015)
Q Consensus 242 ~~~~~~ea~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l---~s~kWkeR~eaL~~L~~l~~~~ki 318 (2015)
-.+.-...- -..-+++.+..+++..+= .-|++-+ ...+|-. .++-+..++....-
T Consensus 120 lletl~~~k------------------~~l~~~l~d~~e~~~~~f-~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~ 177 (1266)
T KOG1525|consen 120 LLETLAKVK------------------FCLLMLLEDCQELVHELF-RTFFDLARKGHPKKVFN---MLDIAIMLITEEDT 177 (1266)
T ss_pred HHHHHHHhH------------------HHheeeccchHHHHHHHH-HHHHHHHhccccHHHHH---HHHHHHHHHHhhcc
Confidence 111000000 001122223333332221 1233322 2255554 22223334432111
Q ss_pred CCCChHHHHHHHH-HHhc---ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHH
Q 000156 319 APGDFTEVCRTLK-KLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 319 ~~~~y~~l~~~L~-k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~ 394 (2015)
. -.+++..|. +.+. |.+..-...|-.++..+|..+- ++...++...+-.-+.....++....+.+-.++
T Consensus 178 v---~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~----~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~ 250 (1266)
T KOG1525|consen 178 V---QSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLE----DTIANFLNSCLTEYKSRQSSLKIKYHELILELW 250 (1266)
T ss_pred c---hHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhc----hhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 1 123444433 3333 5555555555555555555444 444444444443333355667777777777776
Q ss_pred HhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 395 ~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.....-+-.++|.|..-|...+-.+|..+.+.++++|..-.. .+..-.+.+-.+...-+.|...+||-++.++.-.+.
T Consensus 251 ~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 251 RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 642223567789999999999999999999999999875432 222334677778888899999999999988775544
No 148
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.51 E-value=2.6 Score=45.30 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCC---cChhHHHhhhhhhhcCCCh--hHHHHHHHHHHHHHHHh
Q 000156 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDHQDQ--NVRASSKGLTLELCRWI 199 (2015)
Q Consensus 125 ~~~~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~---i~~k~il~~l~~ll~~~d~--~VR~~a~~l~~ely~~l 199 (2015)
.+..++..|.+.+.++||.++.-+|..|-.++++=|... +.=+.|+..|.+++.++.. .||+....++.+-+..+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999977632 3446788999998887643 39999999998888877
Q ss_pred C
Q 000156 200 G 200 (2015)
Q Consensus 200 G 200 (2015)
.
T Consensus 114 ~ 114 (133)
T smart00288 114 K 114 (133)
T ss_pred c
Confidence 5
No 149
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.30 E-value=11 Score=40.80 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=70.7
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2015)
+.+.+|.- +-.|..+++.. +..-.+.+++|+++|...|+++...|+.++..+.+..|..|... .+.++..|
T Consensus 18 ~~~~Dw~~----~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HHH----HHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 45678843 33455555322 23346899999999999999999999999999999999998755 35677777
Q ss_pred HHHhccCcHH----HHHHHHHHHHHHHHh
Q 000156 372 LEKLKEKKPT----VAESLTQTLQAMHKA 396 (2015)
Q Consensus 372 L~klkdkk~~----V~~aa~~aL~al~~~ 396 (2015)
.+.++.+... |++.+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 7767655442 888998888888865
No 150
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.20 E-value=5.7 Score=41.38 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHh--HHHHHHH----Hh--
Q 000156 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF--LLPVLLE----KL-- 375 (2015)
Q Consensus 304 eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~--llp~LL~----kl-- 375 (2015)
..+.+|..+++.. +..+.++++.|.++|.+.|..++..|+.+|..+.+.-+..|..++.. ++-.++. ..
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4556666655422 34578999999999999999999999999999999999988766432 2222321 11
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000156 376 KEKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 376 kdkk~~V~~aa~~aL~al~ 394 (2015)
++....||+.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677877777776653
No 151
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.81 E-value=22 Score=46.89 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=127.6
Q ss_pred hhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 292 EGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
...++++-+.|.-.+.-|..+.. ...+..+-|..|...|..++.|--+.|+.+|..||..+-. ..++=+--+..++-.
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~ 170 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKD 170 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHH
Confidence 44588888999999998888885 3445556678888899999999999999999999887642 222211123333444
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (2015)
+++ -|+.+.||.++..++. .. ..+ +|.|+.-..+-+...|.-+- .+|+++.....+ ..+.-+-.+
T Consensus 171 liq--nDpS~EVRRaaLsnI~---vd-nsT----lp~IveRarDV~~anRrlvY---~r~lpkid~r~l--si~krv~Ll 235 (892)
T KOG2025|consen 171 LIQ--NDPSDEVRRAALSNIS---VD-NST----LPCIVERARDVSGANRRLVY---ERCLPKIDLRSL--SIDKRVLLL 235 (892)
T ss_pred HHh--cCCcHHHHHHHHHhhc---cC-ccc----chhHHHHhhhhhHHHHHHHH---HHhhhhhhhhhh--hHHHHHHHH
Confidence 443 5889999987754432 11 122 45555555555556665543 344444422211 124556678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhcc-----HHHHHHHHHHHhc
Q 000156 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (2015)
Q Consensus 451 ~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld-----~~~~kkI~e~~~~ 502 (2015)
-.+|+|..-.||.|+.+++..=+-.+.+..+-.++..|| ....+.|+..+++
T Consensus 236 ewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 236 EWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 899999999999999999977554454445667888886 4455666666654
No 152
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=84.34 E-value=6.1 Score=43.97 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred hhhHhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHH
Q 000156 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk------------------~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~ 421 (2015)
++...++|.++..++-++ -.+|.+|.+|+.+++.. +...+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777777665554 35899999999999987 224567889999999999 999999
Q ss_pred HHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh
Q 000156 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (2015)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L 454 (2015)
-|...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998766544 45555788888888777
No 153
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.91 E-value=13 Score=42.39 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=83.6
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH---
Q 000156 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV--- 439 (2015)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l--- 439 (2015)
-+..+++.+++.+-.++..||..+...+..+...|-+++..++|.+++-..+.++.+|..+...+....++++.-..
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35678889999999999999999999999999887788999999999888899999999999999998888753221
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
.+.++.....-..+-.|.....+......++.++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 12222222222333445444333335556666666665
No 154
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=83.66 E-value=36 Score=50.99 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=121.2
Q ss_pred CChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHH
Q 000156 297 TKWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~----~~ki~~~~y-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 370 (2015)
.+=..+.-|++.|++++. ...+..-.+ .++++-|..++. ..+..|....++|+..|...-...+..-++.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 355577888888888762 222222223 378888888777 66778999999999999988888888888999988
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhHHHHHHHHh----hcC-ChHHHHHHHHHHHHHHHhc---C---
Q 000156 371 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSV----KNK-VPLVRSLTLNWVTFCIETS---S--- 435 (2015)
Q Consensus 371 LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l--~~il~~l~~~L----~~K-np~vR~~~l~~L~~~l~~~---~--- 435 (2015)
+--.++++.+.+++.+.+++..++.. +..+. .+.+.+++.++ +.+ +..+-..++.+|..|.... +
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 88888999999999999999988765 11111 23444444333 333 3555556666666542111 0
Q ss_pred -----------------------------hhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 436 -----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 436 -----------------------------~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
......+.=.++-.+.++..|..++||..|.+.|-.+....|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0000011222333445567899999999999999888888885
No 155
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.43 E-value=18 Score=38.79 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000156 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 398 ~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~L~D---s~~~VR~aA~~al~~l~ 473 (2015)
..+..+.+..|..-++++||.+...++..|..|+.+++......+. +.++..+.+.+.. .++.||..+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999874322222 3556667777765 58899999999999999
Q ss_pred HHhCch
Q 000156 474 KSVGMR 479 (2015)
Q Consensus 474 ~~~Ge~ 479 (2015)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 998863
No 156
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.42 E-value=1.4e+02 Score=39.79 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=82.1
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 000156 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (2015)
Q Consensus 927 g~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl--~~ll~--~l~~~L~~~k~~p~~R~~~l~~L~~~l~ 1002 (2015)
...|++.+..++|+++.+|+.....||..+++.+..+-..+.- .--+| .+....++++.++.+|...+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999888752 22344 5677777664457899999999987776
Q ss_pred cCCCCCChhhhHHHHHhhcCCCC---hHHHHHHHHHHHHHHHHc
Q 000156 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (2015)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~~VR~aA~~~L~~l~~~~ 1043 (2015)
..+. .+-..+++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~-~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDD-EERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCH-HHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 6643 234566677888886433 233333333444444443
No 157
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.42 E-value=19 Score=39.06 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 371 (2015)
+.+.+|.- +.++..+++.. +..-.+.+++|+++|...|++|...|+.++..+.+..|..|... .+.++..|
T Consensus 14 l~~~dw~~----ileicD~In~~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEA----IQAFCEQINKE---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 46788854 44444444321 22345789999999999999999999999999999999999755 35788888
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000156 372 LEKLKE------KKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 372 L~klkd------kk~~V~~aa~~aL~al~~~ 396 (2015)
++.+.. ....|++-+...+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 887753 4578999999999888764
No 158
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.39 E-value=19 Score=44.96 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=83.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHh
Q 000156 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVD 403 (2015)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~-----~~l~~ 403 (2015)
.|...++.-|.+|+..|+.-|..+-..--.....+...+++.+.+.+-|....||++...+++.++-..| ....-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3444556777778888877777766652222334666788888888999999999999999998765422 12345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000156 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (2015)
Q Consensus 404 il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (2015)
+++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 67888899999999999999999999999987653
No 159
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=11 Score=49.51 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=113.8
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~r-L~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ll 938 (2015)
+.+.|++--.|..++-.+.---.+ +.+ ...+..|... ++|.|-.|+..|...||.++-. -...+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~G-----Tgn--nkair~lLh~aVsD~nDDVrRaAVialGFVl~~--------dp~~~ 590 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVG-----TGN--NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR--------DPEQL 590 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhc-----cCc--hhhHHHhhcccccccchHHHHHHHHHheeeEec--------Chhhc
Confidence 346788888899987766522211 112 2344444444 7999999999999888866521 13567
Q ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC--CCChhhhHH
Q 000156 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLK 1015 (2015)
Q Consensus 939 p~ll~~L~D~-k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~--~~~~~~ll~ 1015 (2015)
|.++..|.++ +++||-.+.-+|+-.+.-+|...-+..+-+...++ +..+|+.++--++-.+-.... .+.+..+.+
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 8888888876 78999999999999999999888777766666665 468999988877765544433 355666777
Q ss_pred HHHhhcCCCChHHHHHHHHHHH
Q 000156 1016 PASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1016 pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
-+.+.+.|++.++-..--.+|.
T Consensus 669 ~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 669 QLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 7888888988886555444444
No 160
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.05 E-value=6.5 Score=41.37 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh---C---
Q 000156 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---G--- 946 (2015)
Q Consensus 873 ale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L---~--- 946 (2015)
.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-.+.|...++.-...|-.+. +
T Consensus 21 ~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 34455555542 233468999999999999999999999999999999888888877666554443322 2
Q ss_pred -----CCcHHHHHHHHHHHHHHHH
Q 000156 947 -----DNKKHMRECTLTVLDAWLA 965 (2015)
Q Consensus 947 -----D~k~~Vr~aa~~aL~~i~~ 965 (2015)
+..+.||.+|.+++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 2345799999999988764
No 161
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.93 E-value=16 Score=46.78 Aligned_cols=197 Identities=17% Similarity=0.134 Sum_probs=125.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~-~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
.....++++-+.|+-.++-|.-+.+. ..|...-|..|...|.+++-|-.+.|+.+|..|+..+-. +..+=+.....++
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~~~neen~~~n~l 174 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-MELNEENRIVNLL 174 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccCChHHHHHHHH
Confidence 34456889999999999988887753 345555677888888888889999999999999988763 3322233344444
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 448 (2015)
-.++. -|+...||.++ |-.+... ..+. |.|+.-..+-+...|.. +-.+|+.+.+.......-|.+.
T Consensus 175 ~~~vq--nDPS~EVRr~a---llni~vd-nsT~----p~IlERarDv~~anRr~---vY~r~Lp~iGd~~~lsi~kri~- 240 (885)
T COG5218 175 KDIVQ--NDPSDEVRRLA---LLNISVD-NSTY----PCILERARDVSGANRRM---VYERCLPRIGDLKSLSIDKRIL- 240 (885)
T ss_pred HHHHh--cCcHHHHHHHH---HHHeeeC-CCcc----hhHHHHhhhhhHHHHHH---HHHHHhhhhcchhhccccceeh-
Confidence 44443 46777788755 2222211 1222 34444344444444443 2356666554322221123333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHh
Q 000156 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2015)
Q Consensus 449 ~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (2015)
.+..+++|..-.||.|+..++..-+..--+-.+-.+++.||-.+++-....++
T Consensus 241 l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 67789999999999999999987776655545667888898777664444443
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=10 Score=50.83 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=122.3
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~--a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+.+..+.|+.--+|-.|+..+..+++. ....+. ...++.++...|.|-+..|...|++.+..|+.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 4667778888888999999999999982 111222 245788889999999999999999988777755 5
Q ss_pred hhHHHHHHHHHhCCCc-H---HHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc
Q 000156 934 SKGVLSDILKCLGDNK-K---HMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (2015)
Q Consensus 934 ~~~llp~ll~~L~D~k-~---~Vr~aa~~aL~~i~~~~g------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~ 1003 (2015)
-+.++|.+..-+.+.+ + ..|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 5678888888554433 2 234444467777777776 233444444444433 123477777766655443
Q ss_pred CCC--CCChhhhHHHHHhhc-CCCChHHHHHHHHHHHHHHHHcChhH
Q 000156 1004 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1004 ~~~--~~~~~~ll~pl~~~L-~D~~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
... +..+.+.+..|+... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223344455555543 79999999999999999999999764
No 163
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.14 E-value=7.1 Score=41.09 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh-----------cCCCHHHHHHHHH
Q 000156 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------NDGTPEVRDAAFS 467 (2015)
Q Consensus 399 ~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L-----------~Ds~~~VR~aA~~ 467 (2015)
..+.++++.|..-|++++|.||.-+|..|..++..-+.. |...+..-...+..|. +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 345677888888888888999888998888877765433 3322222223333332 4556789999999
Q ss_pred HHHHHH
Q 000156 468 VLAAIA 473 (2015)
Q Consensus 468 al~~l~ 473 (2015)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
No 164
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.96 E-value=7.6 Score=50.61 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=99.1
Q ss_pred hccccchHHHHHHHHHHHHHHHHHhChhh-----HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---c
Q 000156 902 GRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH---L 969 (2015)
Q Consensus 902 ~rL~DsN~~V~~~Al~~l~~La~alg~~f-----~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~----~g---l 969 (2015)
.-|+-.|.+|+..|+.++=.+..--|++. +..+..=+--+...|.|.-+.||..|+..+..+... .+ +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 44567899999999999888887777765 333444445677889999999999998877765543 23 3
Q ss_pred hhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000156 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (2015)
Q Consensus 970 ~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~ 1041 (2015)
..++..|.+.+..+. ..++|..+.+-|...+..-...+-+..+++.+--.|.|.+..||-|+...+..+-.
T Consensus 261 ~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 445555666665443 36899999988887665322233445555657778999999999999998876643
No 165
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.86 E-value=14 Score=46.68 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 7889999999999988665555543 478999999999999999999998774
No 166
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=81.73 E-value=16 Score=45.82 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=76.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhChhhHHh
Q 000156 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-------NKNLVMATLITLGAVASAMGPAVEKS 933 (2015)
Q Consensus 861 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds-------N~~V~~~Al~~l~~La~alg~~f~~~ 933 (2015)
.+-+.+-..|.+|++.|+. ... +..|++.|...+.+. |..+....++.+..|...-.-.+++|
T Consensus 186 a~~~~~~~~r~~aL~sL~t-----D~g-----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-----DPG-----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-----CCC-----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 3455677778888777652 122 356666666655433 33333333444444433333457899
Q ss_pred hhHHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--chhhHH----HHHHHHhcCCCChhHHHHHHHHH
Q 000156 934 SKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LDKMVP----YVTTALTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 934 ~~~llp~ll~~L~----------D~k~~Vr~aa~~aL~~i~~~~g--l~~ll~----~l~~~L~~~k~~p~~R~~~l~~L 997 (2015)
+..|+|.++.|+- +..-.+|+.|...|..+++.++ ...+.+ .+..+|.+++.+.....+++..|
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 9999999999883 2334699999999999999876 223334 44444444432223355555444
Q ss_pred H
Q 000156 998 S 998 (2015)
Q Consensus 998 ~ 998 (2015)
.
T Consensus 336 ~ 336 (343)
T cd08050 336 S 336 (343)
T ss_pred H
Confidence 4
No 167
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.51 E-value=23 Score=50.91 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.3
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~~~ki~--~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 367 (2015)
..+++.-++=..|..|+.+|..+++..... .+-++.....+.+.+.|-+..|+....+++..+..++++...||.+.+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 344555566678889999999988533222 123667778888888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------C-CChHhHHHHH----------------HHHhhcCChHHHHH
Q 000156 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVEDV----------------KTSVKNKVPLVRSL 422 (2015)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~aL~al~~~~--------~-~~l~~il~~l----------------~~~L~~Knp~vR~~ 422 (2015)
+|..+-..-|.-..|..+|.+.+...+... | ..+-.++.++ ...++.|-+++...
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 999999888888889988888877665320 1 0011112221 12234677888888
Q ss_pred HHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 423 TLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 423 ~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++..+...+...... .+. ...+. -...+-+.+.+..+.+|.+..+++-.+.+.+...
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 888888887544321 111 11122 2345678889999999999999998887666544
No 168
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.27 E-value=3.1e+02 Score=43.58 Aligned_cols=168 Identities=13% Similarity=0.093 Sum_probs=95.7
Q ss_pred CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccc
Q 000156 754 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 833 (2015)
Q Consensus 754 l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~ 833 (2015)
++..-+++.+... +.+.|..++.++..++..++...-.. |++- .+
T Consensus 980 lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~----l~~~-----------------------~~------- 1024 (3550)
T KOG0889|consen 980 LDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLI----LGSP-----------------------ER------- 1024 (3550)
T ss_pred cCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHh----hcCc-----------------------ch-------
Confidence 5666788888886 99999999999999988776432211 1100 00
Q ss_pred cCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhccccchHHHH
Q 000156 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLV 912 (2015)
Q Consensus 834 ~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~~L~~rL~DsN~~V~ 912 (2015)
.-...+...|-+.++..+-++.|..|..|...|.-++..-+ ..+- ..+.+++.+|.-++.|.-..+-
T Consensus 1025 -----------~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~~ 1092 (3550)
T KOG0889|consen 1025 -----------AFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEVS 1092 (3550)
T ss_pred -----------hhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCccccc
Confidence 00112333445566666777777777777666666665321 1100 1123445555444443222111
Q ss_pred H----HHHHHHHHHH----HHhCh-hh-HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 913 M----ATLITLGAVA----SAMGP-AV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 913 ~----~Al~~l~~La----~alg~-~f-~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
. .+-.++-.+- ...+. +- ......++..+..-|.+++..||+.+..+|..+.+..|
T Consensus 1093 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1093 SLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG 1158 (3550)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC
Confidence 1 1111111111 11111 11 13455677788888889999999999999999999886
No 169
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=70 Score=43.36 Aligned_cols=179 Identities=13% Similarity=0.148 Sum_probs=105.8
Q ss_pred HHHHhhhccC-CHHHHHHHHHHHHHHHHhccc--c-chHHH----HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000156 604 ADTVGQLKSA-VWKERLEAISSLRQQVEAVQN--L-DQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 604 ~~l~~~L~s~-~Wk~Rl~a~e~L~~~v~~~~~--~-~~~~~----~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
..++.+|... +--..++++.+|.+++.-+.+ + .-..+ +|+.+|. -+.||-++..++.+|.++.+.+|
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-----~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-----HEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHhhcc
Confidence 4667777766 777788888888877643222 1 11223 4444443 47899999999999999999987
Q ss_pred CCchhHH-HHHHHHHHhhhcchhhhHHHHHHH---HHHHhhhChhHH----HHHHHHHhhhCCChhHHHHHHHHHHHHHH
Q 000156 676 KFPKKCV-VLCLLGISERVADIKTRAHAMKCL---TTFSEAVGPGFI----FERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (2015)
Q Consensus 676 ~~~~~~~-~~il~~LveKlgD~K~r~~a~~~L---~~l~e~~~~~~V----l~~L~~~l~~~KnpKv~~~~l~~L~~li~ 747 (2015)
.-..-.+ +..||.+++||-..-.-+.|.++| ..|....+-..+ +..++.++ +==+--++..+|...+++..
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 5332222 247899999998865444444444 444444332211 11111111 10112344555666666666
Q ss_pred HhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 000156 748 DFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (2015)
Q Consensus 748 ~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~ 789 (2015)
....+.+. +-+.++.+..+ |++.+..+-+.+.-|+..+...
T Consensus 324 si~sd~f~~v~ealPlL~~l-Ls~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPL-LSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred cCCCccchHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHh
Confidence 55544332 34567777788 8888877666666666655443
No 170
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.03 E-value=8.3 Score=38.61 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=66.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
..+..+.|..-=+|-.|+..|.+++.... ........++..+...|+|....|...|++.+..|+...+ ..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-------~~ 77 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-------DE 77 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------HH
Confidence 45666788877799999999999998532 2223346788889999999999999999999999996653 45
Q ss_pred HHHHHHHHhCCCc
Q 000156 937 VLSDILKCLGDNK 949 (2015)
Q Consensus 937 llp~ll~~L~D~k 949 (2015)
+++.+++.+.|.+
T Consensus 78 vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 78 VLPILLDEYADPS 90 (92)
T ss_pred HHHHHHHHHhCcc
Confidence 7788888777654
No 171
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=5.9 Score=50.21 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=58.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh
Q 000156 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (2015)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-k~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L 412 (2015)
++|.|--|++.|..+||.++-.= +.+++..++.+.++ +..||-...-+|.-.+.. ++....++.+-.-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 34555555555555554443110 23455555555443 555665555555544443 33333333333344
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHH
Q 000156 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
.+-|--||+.++..+..++-.+.+. +.+..+.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5666666666666666555555432 3344455555566666655544
No 172
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.97 E-value=26 Score=46.14 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000156 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (2015)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~ 403 (2015)
.+.+.++..++.|..+.|+..|++.|-.+|+.-. .++..+.-.|...|....+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4678889999999999999999999999887633 35666677777777788888899999999999986 2333
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHHHHhcChhHHH---HhhhhHHHHHHHHhcC
Q 000156 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL---KVHKDYVPICMECLND 456 (2015)
Q Consensus 404 il~~l~~~L~---~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~l~~l~p~l~k~L~D 456 (2015)
.+..|+..+. +....+|+.++.||..-+.......+. ..-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 3444443332 556789999999998776655443322 1224566778888888
No 173
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.87 E-value=21 Score=43.59 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc----ch--hhhHhHHHHHHHHhc--------cCcHHHHHHH
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 386 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkk~~V~~aa 386 (2015)
..+.-+++.+...+.|....+...+|+|+..|...+... |. .+...+-.++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 346678889999999999999999999999999866533 23 347777777887777 7778899999
Q ss_pred HHHHHHHHHh----c----CCChHhHH-HHHHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHH
Q 000156 387 TQTLQAMHKA----G----CLNLVDVV-EDVKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (2015)
Q Consensus 387 ~~aL~al~~~----~----~~~l~~il-~~l~~~L~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 453 (2015)
..|+..++.. + ...+.+++ +.|+..+.+ + .+.++...++.+..++...+.. ..++++.++|.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 9999998663 0 12244554 446666653 3 5899999999999998876654 457899999999999
Q ss_pred hcCCCH
Q 000156 454 LNDGTP 459 (2015)
Q Consensus 454 L~Ds~~ 459 (2015)
+.+++.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 988753
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.83 E-value=21 Score=49.59 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=92.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhc
Q 000156 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (2015)
Q Consensus 336 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~ 414 (2015)
-+++.+...|--+++.+.-. .. .|...-+|.++.-+ |.+.+.||..+..++.-+.-....-++..-+.+..-|.+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~i-Sa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCI-SA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhh-hH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 44566666666666555421 22 34445555555555 467888998888888765532134456778889999999
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
-++.||..|+..|..++-+- ..+ +|=.++.+..|+.|+++++|+-|..-|-.+.+.
T Consensus 1010 ~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 99999999999998876531 222 356678899999999999999999777666544
No 175
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=80.83 E-value=22 Score=42.55 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=110.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000156 297 TKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~~~ki~~--~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2015)
.+--.+..++-.+...+..+.-.. .++ ..+..+...+.+.+..|...|+.++..++..- +.....+.+++.+++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~--en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVND--ENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHH
Confidence 455566666666655443221000 011 23456777888999999999999999887543 2334556667777776
Q ss_pred hccC--cHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHH
Q 000156 375 LKEK--KPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPI 449 (2015)
Q Consensus 375 lkdk--k~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~ 449 (2015)
.... +..++.++..+|..+... ...-+...+++++.-+...+..+|..++..|..+-+. + ......+ ......
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p-~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-P-DMTRELLSAQVLSS 179 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-H-HHHHHHHhccchhH
Confidence 5443 667888888888777432 1122456788888888999999999999988775432 1 1111111 234556
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHhCch
Q 000156 450 CMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 450 l~k~L~Ds-~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++.+++.. +.++--.+...+..+...++.+
T Consensus 180 ~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 180 FLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 66666654 5677666666666666666543
No 176
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.72 E-value=9.3 Score=47.50 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=94.9
Q ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhh-HHhh
Q 000156 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (2015)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f-~~~~ 934 (2015)
.+++.++.-.|-++|++|+..|.+++.. +..+.-..+.+++.-+..++.|-...|+....+++..+...+++.- .+++
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 5788889999999999999999999974 3433333457888888999999999999999999999888777664 7888
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 935 ~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
..+++.+...+...-+.||.-+...+.-++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8899999999999999999999888888888876
No 177
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.49 E-value=25 Score=45.28 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=105.6
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHH---Hhhhc----chhhhH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR---GLRTH----FSGSSR 365 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~---~L~~~----f~~~~~ 365 (2015)
+.+.+=..|.+||+.|+. ...++.+++-+...|. ....+|+..-+..|-.|-+ .|-++ .++|+.
T Consensus 216 ~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 456888899999998743 2346778888887777 3344444444444433333 33222 579999
Q ss_pred hHHHHHHHHhccCcHH----------HHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhh-c-CChHHHHHHHHHHHH
Q 000156 366 FLLPVLLEKLKEKKPT----------VAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVK-N-KVPLVRSLTLNWVTF 429 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~----------V~~aa~~aL~al~~~~~~~l~----~il~~l~~~L~-~-Knp~vR~~~l~~L~~ 429 (2015)
.++|.++.++-.++-- +|+-+...+..++.+...... .|+..+..++. + +.+...-+++.-|..
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999999998777542 788888888888876222222 34444444443 3 557888888877766
Q ss_pred HHHhcChhHHHHhhhhHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhC
Q 000156 430 CIETSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 430 ~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~---~VR~aA~~al~~l~~~~G 477 (2015)
+-...-...+.+.++.+.--+...+++... -.+..|..+.+.|.++..
T Consensus 368 lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~ 418 (576)
T KOG2549|consen 368 LGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAEN 418 (576)
T ss_pred hhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhh
Confidence 433221222223445555555544543333 236666667766666554
No 178
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.38 E-value=7.1 Score=39.11 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHH
Q 000156 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (2015)
Q Consensus 405 l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~ 484 (2015)
+..++..+.+..+.+|...+..|..++.... ......+.++..+...|.|.++=|=-.|.++|..+....+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455566678889999999999999998766 11123578889999999999999999999999999999998766555
Q ss_pred HH
Q 000156 485 IE 486 (2015)
Q Consensus 485 l~ 486 (2015)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 44
No 179
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.32 E-value=5.9 Score=45.18 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=60.5
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHHhC
Q 000156 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (2015)
Q Consensus 128 ~v~~~L~~~~~~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (2015)
.-++.+++.+.+.+++++..++..+..+++ +|. ++|+..+|.+..|..++|+.||+.|..++.+++.--+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 345667778889999999999999988877 687 6799999999999999999999999999998875543
No 180
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=79.85 E-value=15 Score=40.56 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=66.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhcc--------ccchH---HH------HHHHHH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 917 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~~L~~rL--------~DsN~---~V------~~~Al~ 917 (2015)
+.+..+++.+=++|..|++.|..++.... ..+....|..++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 57788999999999999999999997432 4555566888888886654 11111 21 233444
Q ss_pred HHHHHHHHhChhhH-HhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHH
Q 000156 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK-KHMRECTLTVLDAW 963 (2015)
Q Consensus 918 ~l~~La~alg~~f~-~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i 963 (2015)
++..++....+.|. +.+..++..|++.+.+.. ..+.-.+...+..+
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 44444444444443 456778888888887776 33333333333333
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.67 E-value=12 Score=41.43 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHhccccc-hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000156 896 LFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 896 L~~~L~~rL~Ds-N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~ 966 (2015)
.+.+|...|+|. -..-...++.++-.+.+.+|..+-+|+..++|.++..+.......++....-|..++.-
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345566666664 23333456677777778899999999999999999999877778888887777776653
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.58 E-value=40 Score=37.65 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=82.3
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh-hhcchhhhHhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHh--
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA-- 396 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~aL~al~~~-- 396 (2015)
.+.+.++.-+...+.+.+..-+..|+..++.++..- ..-|..+....+..++..+.. ....+.+++..++..++..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345667777777778878888899999999998876 455767888888888888865 4557889999999999977
Q ss_pred cC---------CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 397 GC---------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 397 ~~---------~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
+- ..+..+++.++..++. ......++..|..++..++..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 11 1123333333333332 677788999999999887643
No 183
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=79.47 E-value=22 Score=48.50 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHh--hhcchhhhH--hHHHHHHHHhccCcH
Q 000156 306 VAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKP 380 (2015)
Q Consensus 306 L~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~--~llp~LL~klkdkk~ 380 (2015)
++.++.+..++.-....+.+.+.-|.+.+. ..+. ...+.|+|.|+.-- .-++...+. .++|.|.+.++....
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 455677776542222235556666666666 2232 45567777777643 235666664 689999999965533
Q ss_pred --HHHHHHHHHHHHHHHh-cCCC-h--HhHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHH
Q 000156 381 --TVAESLTQTLQAMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICM 451 (2015)
Q Consensus 381 --~V~~aa~~aL~al~~~-~~~~-l--~~il~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~ 451 (2015)
.+.-.+...+.++... .|-. + ..+++.+...|+.|. -..=.+++-.+.+++.+-. ...+... ..+...+.
T Consensus 548 ~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~yli 626 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLI 626 (708)
T ss_pred ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHH
Confidence 3433333444444322 1111 1 256777777777655 4444455555555554422 1222222 45788999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 452 ECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 452 k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
.++.|+|++||..|-.||..++.+=
T Consensus 627 dL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 627 DLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888763
No 184
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.32 E-value=8.6 Score=43.49 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=89.9
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHH---hChhh
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 930 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~a---lg~~f 930 (2015)
+.+.|.+++.+.++--|.-|-+.+.+++.....+|.|-. .+|+..|+..|.-.|..|...+|++|+.|+.. .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 446788999999988899999999999987667888875 89999999999999999999999999998854 46888
Q ss_pred HHhhhHHHHHHHHHhC------------CCcHHHHHHHHHHHHHHHHhcCchh
Q 000156 931 EKSSKGVLSDILKCLG------------DNKKHMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 931 ~~~~~~llp~ll~~L~------------D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
-+|.++++|.+- .++ |++..+-+-..++|..+-.+-|...
T Consensus 194 VPfYRQlLp~~n-~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnA 245 (262)
T KOG3961|consen 194 VPFYRQLLPVLN-TFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNA 245 (262)
T ss_pred hhHHHHhhhhhh-hhcccccccccccCccccccHHHHHHHHHHHHHHcCCccc
Confidence 899999998663 222 2344555666666666655555433
No 185
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.09 E-value=11 Score=42.03 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=84.3
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhh-------
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT------- 358 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~-~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~------- 358 (2015)
.....+.++++..|-.|+.-+..++. + +.+....|...++.|.+.++ .....+...|+.++..|...++.
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 34455688999999999998888774 3 55555678899999999998 55677888899999999986653
Q ss_pred cchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh
Q 000156 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (2015)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l 401 (2015)
...|....+++.+++.+.+ ..+.+.+..+|..++.+.++.+
T Consensus 109 i~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred HhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 2357888899999988876 5667777788888777633333
No 186
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=79.02 E-value=2.7e+02 Score=42.37 Aligned_cols=295 Identities=10% Similarity=0.072 Sum_probs=153.1
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhc---cccchH-HH-HHHHHHhcCCCC-cccHHHHHHHHHHHHHHHHHHcCCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV---QNLDQS-VE-ILVRLVCMLPGW-SEKNVQVQQQVIEVINYLAATATKF 677 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~---~~~~~~-~~-~Lv~~L~~~pg~-~DsN~qV~~~~Le~l~~l~~~~~~~ 677 (2015)
+-++..-.+.+-..++-|+..|.+..... +++... .| .+++-|... + +-.+..|.+..++++..++...+..
T Consensus 1140 ~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i--m~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1140 DFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV--MRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 33444444556667788888766554331 111110 11 222322110 1 2345578888888888877654322
Q ss_pred ---chhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhh-hC--h---h----HHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000156 678 ---PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA-VG--P---G----FIFERLYKIMKDHKNPKVLSEGILWMVS 744 (2015)
Q Consensus 678 ---~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~-~~--~---~----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~ 744 (2015)
+.+.+..++..... --+..+-..|.+++..++.. ++ + . -++..+..+..+..++++-..++..|..
T Consensus 1218 IkSGWktIF~VLs~aa~-d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAY-DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred hhcCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence 33344444443321 01123456677777766543 11 0 1 2334444554334457777777777665
Q ss_pred HHHHh-----CC---------------------CC----CC----hhh---HHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 745 AVEDF-----GV---------------------SH----LK----LKD---LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 745 li~~f-----G~---------------------~~----l~----~k~---li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+...+ +. .. .+ ..- ++.-+.++ ..+..++||..|+..|-.+.
T Consensus 1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSEL-SFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHH
Confidence 53333 10 00 00 011 22223344 45789999999999998888
Q ss_pred HHhChhHHh-----hhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhc
Q 000156 788 KFVGPDIKG-----FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862 (2015)
Q Consensus 788 ~~~G~~l~~-----~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l 862 (2015)
...|..|.. .+..+--.++..+...++......+ ..+. +.. . . ...
T Consensus 1376 ~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~--~~~~-----------------~~~---~----~---~~~ 1426 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEP--EGQG-----------------VDG---D----Q---GEL 1426 (1780)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccc-----------------ccc---c----c---cch
Confidence 877865532 1233333334433333221110000 0000 000 0 0 011
Q ss_pred CCCChH--HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHH
Q 000156 863 ESPDWK--VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (2015)
Q Consensus 863 ~d~~Wk--~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~ 932 (2015)
+.+.|- .-..|++.+..+...--..|.+ .+.+++..|...+...|..+...++.|+..|...-|..|..
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 233583 4556666666666532112222 45777777778888899999999999999999999999865
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=78.52 E-value=15 Score=37.84 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhcc
Q 000156 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2015)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2015)
.+...-|..++.-+..+++ .....+....+.++-.|..+++.. ++|+.|.+|-..|.+.++++.+.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3556888999999999888 444445555666666666666665 999999999999999999988998887654
No 188
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.28 E-value=8.4 Score=49.59 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=72.8
Q ss_pred hhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHH
Q 000156 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (2015)
Q Consensus 293 ~l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~ 370 (2015)
.+.+.+|.--. +|..+++... +.-.+++++|+|+|...++.|...|+.+|+.+.+..|..|... -+.|+..
T Consensus 13 ~l~~pDWa~Nl----eIcD~IN~~~---~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNL----EICDLINSTE---GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHH----HHHHHHhcCc---cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46778885543 3555554221 1223899999999999999999999999999999999999744 4578888
Q ss_pred HHHHhccC--cHHHHHHHHHHHHHHHHh
Q 000156 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 371 LL~klkdk--k~~V~~aa~~aL~al~~~ 396 (2015)
++..++.+ -..||+-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 88888776 346777777777777654
No 189
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.18 E-value=2.4e+02 Score=37.41 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=81.2
Q ss_pred hhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhHHHHHHHHhhcC--ChHHHHHHHHHHHHHHH
Q 000156 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (2015)
Q Consensus 357 ~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l~~il~~l~~~L~~K--np~vR~~~l~~L~~~l~ 432 (2015)
...|++....++|++|.++..+...||..+.+.+..+-.- +...+.-=++.|+...++. ++.+|..++-|+...+.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3468888999999999999999999999999999877654 1122222245666666643 59999999999999999
Q ss_pred hcChhHHHHhhhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHh
Q 000156 433 TSSKAAVLKVHKDYVPICMECLNDGT---PEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~k~L~Ds~---~~VR~aA~~al~~l~~~~ 476 (2015)
+.+...- ..++|.+++++.... ..........+..++++.
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 8876544 567788888886332 233333344444444444
No 190
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.06 E-value=9.9 Score=46.58 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=66.0
Q ss_pred hhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHH--hhhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000156 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHL 969 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~--~~~~llp~ll~~L~D-~k~~Vr~aa~~aL~~i~~~~gl 969 (2015)
-.+.+.+|.+||+-.+..|+..||.++..++..+|+.|.. ..+.|..-|...+.+ ....|+......+..|.+.+.-
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999999875 456677777777774 4566999999999999887654
Q ss_pred hh
Q 000156 970 DK 971 (2015)
Q Consensus 970 ~~ 971 (2015)
+.
T Consensus 123 Dp 124 (462)
T KOG2199|consen 123 DP 124 (462)
T ss_pred Cc
Confidence 43
No 191
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=77.52 E-value=48 Score=42.69 Aligned_cols=202 Identities=13% Similarity=0.067 Sum_probs=125.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHh
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ 366 (2015)
+.+.+.+.+=.||.-...-|..+-. -+..-+.-...+...|..-+. ..+...+...+.+++.+.+|....+... ...
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 4445688999999876666777642 221111111223333333333 5566688899999999999877555433 334
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000156 367 LLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (2015)
Q Consensus 367 llp~LL~klkdkk~~-V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (2015)
+...++-.++.+.-. .......|+..++.+.+.-...++..|+...---|++=..--++.+..++...++..+.+....
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445555566665443 4788889999998873333345666666666666666666678888999998888888888999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHH
Q 000156 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498 (2015)
Q Consensus 446 l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e 498 (2015)
+...+.+|+...+-.|-+.|. ..+.++.+..++.+-.......|-.
T Consensus 298 lf~~la~ci~S~h~qVAErAl-------~~w~n~~~~~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERAL-------YFWNNEYFLSLISQNSRVILPIIFP 343 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH-------GGGGSHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH-------HHHCCHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999966665 4456555555555544433444433
No 192
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=77.27 E-value=1.7e+02 Score=38.49 Aligned_cols=132 Identities=11% Similarity=0.188 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-----h
Q 000156 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-----D 728 (2015)
Q Consensus 654 DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~-----~ 728 (2015)
-++.......|+++..++. ++.+...++..++..|+.-.+-......+.+++..++........+..++..+. .
T Consensus 188 Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~ 266 (464)
T PF11864_consen 188 TSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQN 266 (464)
T ss_pred cCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccc
Confidence 3444556788888888877 577777888888888887766667888999999999987666777888888872 2
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCC---CChhh--HHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 729 HKNPKVLSEGILWMVSAVEDFGVSH---LKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 729 ~KnpKv~~~~l~~L~~li~~fG~~~---l~~k~--li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
..++.+..+++..+..++-..|..+ +.... +++-+..+ +...++.|=.....++-.+.
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHH
Confidence 3578888899999999998775554 33444 88888887 88888776655555555554
No 193
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=76.75 E-value=2e+02 Score=38.78 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcC-ChHHHHHHHHHHHHHH
Q 000156 383 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCI 431 (2015)
Q Consensus 383 ~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~K-np~vR~~~l~~L~~~l 431 (2015)
.+....|+..+... -..+++.| |+.+|.+. ..+....|+.|+..+.
T Consensus 270 ~ekvl~aiT~~ae~--~~veRF~p-iv~gl~~~e~~~l~vacmq~INal~ 316 (1102)
T KOG1924|consen 270 LEKVLEAITTIAEA--KPVERFRP-IVEGLDFLEKQQLQVACMQFINALV 316 (1102)
T ss_pred HHHHHHHHHHHHhh--cchhhhhh-HHHHHhccchHHHHHHHHHHHHHhc
Confidence 33444444444432 23333333 33555533 5666666666665543
No 194
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.01 E-value=18 Score=46.19 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=103.1
Q ss_pred CChHHHHHHHHHHHHHhc---CCCCCCC--------ChH--HHHH-HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchh
Q 000156 297 TKWSERKDAVAELTKLAS---TKRIAPG--------DFT--EVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~---~~ki~~~--------~y~--~l~~-~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~ 362 (2015)
..|+ .||++.++..+. +.++..+ .|+ ++.. .+.+.+.|..+.++..+.-.++.---|-++
T Consensus 476 gt~s--~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn---- 549 (926)
T COG5116 476 GTWS--VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN---- 549 (926)
T ss_pred cCCC--HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----
Confidence 4564 477777777653 3333221 221 3333 344455577777776665544433333332
Q ss_pred hhHhHHHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhHHH
Q 000156 363 SSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (2015)
Q Consensus 363 ~~~~llp~LL~k-lkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L-~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (2015)
-.++..+|.- ..|.+..||.||.-||..++-. - .+.++....-| ++-|+.||.+++-.|..+....+.
T Consensus 550 --~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D-~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 550 --LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D-RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred --chhHhhhheeecccCchHHHHHHHHheeeeEec---C-cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 1345555554 6799999999998888876522 2 23444444444 588999999999999877665442
Q ss_pred HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 441 ~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
+..+..|-.++.|++.-||.+|.-+++.+.....+
T Consensus 620 ---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 620 ---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 44456677788999999999999999887655443
No 195
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.79 E-value=30 Score=45.62 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChH
Q 000156 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPL 418 (2015)
Q Consensus 339 ~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~ 418 (2015)
..+-..|++.|... -+.|-.....-+-++++.+.|....||..|...|-.++..+...+..+.+.|...|+...+.
T Consensus 36 ~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 36 PKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHH
Confidence 44556666655544 46788889999999999999999999999999999888753345778888888889988887
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
-...+=+.|..++...++..+...++.+... ...+..||+.+.+.+..-+.-++.
T Consensus 112 E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 7777777777777776666665444444432 245678999998888655554454
No 196
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.20 E-value=26 Score=42.72 Aligned_cols=159 Identities=11% Similarity=0.155 Sum_probs=105.4
Q ss_pred cCCChHHHH----HHHHHHHH-HhhccCCCCchHHHhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh----hhh-
Q 000156 21 LHKNWKVRN----EANIDLAA-LCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA----GRY- 90 (2015)
Q Consensus 21 ~~k~WK~R~----~ayeeL~~-~~~~~~d~~~~~~~~~~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~----~~~- 90 (2015)
.-+.||.-- ..+..++. .... ..-+..|.-+.+.+..++.|..+.+...|+.+|..|+++..... .++
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~~~~--~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tG 162 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQLDR--PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTG 162 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhcCCc--chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcC
Confidence 566888754 44444444 1111 11222344456777788999999999999999999999876532 233
Q ss_pred HHHHHHHHHHhhcC---------CChhHHHHHHHHHHHHHhhh-----h-----h-hhHHHHHHHHhh--cC--ChhhHH
Q 000156 91 AKEVCDAIAAKCLT---------GRPKTVEKAQAVFMLWVELE-----A-----V-DVFLDVMEKAIK--NK--VAKAVV 146 (2015)
Q Consensus 91 ~~~v~~~LieK~l~---------~k~~~k~~a~~~ll~~~E~~-----~-----~-~~v~~~L~~~~~--~K--npKv~~ 146 (2015)
..+|+-..+.+|+. .-..+-..|..|++.++... . . +.+-+.|+.++. .+ +|+++.
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 35566555556654 12345566777877775541 1 1 233355666654 23 699999
Q ss_pred HHHHHHHHHHHHhCCCCc-ChhHHHhhhhhhhcCCC
Q 000156 147 PAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQD 181 (2015)
Q Consensus 147 ~~l~~L~~~l~~fG~~~i-~~k~il~~l~~ll~~~d 181 (2015)
.-++.+..++...|...+ -++.+++.+...+.+++
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999654 47888888888888765
No 197
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.44 E-value=22 Score=37.31 Aligned_cols=79 Identities=9% Similarity=0.103 Sum_probs=57.0
Q ss_pred ccCCCCChhhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000156 886 KRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDA 962 (2015)
Q Consensus 886 ~~I~~~~~~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~~~~--llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2015)
.++..++ .+++..|.+.|. ..+..+..-||.-|+.++..... -...++. .=..+++.+.+.++.||..|..|+..
T Consensus 35 ~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4666665 789999999994 44778888999999999988732 2333322 23567788889999999999999988
Q ss_pred HHHh
Q 000156 963 WLAA 966 (2015)
Q Consensus 963 i~~~ 966 (2015)
++.+
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 198
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.82 E-value=35 Score=37.04 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=68.8
Q ss_pred hccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh--hHhHHHH
Q 000156 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~ 370 (2015)
+.+.+|.-=.+ +..+++.. ...-.+.+++|+++|. ..|.+|+..|+.+++.+.+..|..|... .+.++..
T Consensus 14 l~~~dw~~ile----icD~In~~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNME----ICDIINET---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHH----HHHHHhCC---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 56678865333 44444322 1234589999999998 6799999999999999999999999755 3467776
Q ss_pred -HHHHhccC---cHHHHHHHHHHHHHHHHh
Q 000156 371 -LLEKLKEK---KPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 371 -LL~klkdk---k~~V~~aa~~aL~al~~~ 396 (2015)
|.+.+..+ ...|++-+...+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 56665533 247888888888887754
No 199
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=72.42 E-value=15 Score=42.25 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChh
Q 000156 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (2015)
Q Consensus 909 ~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~ 988 (2015)
...-...+.+++.+...+|....+++..++-.+-+.-.+..-..|..+..|+++.++..|.+.++..+-=-+.++.....
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556778999999999999888887777777777777777889999999999999999998887644322221111234
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc
Q 000156 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (2015)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (2015)
.|.-++-.|.+.+.+. .-..+.+.+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 5666666666554322 1223455555554433
No 200
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=71.32 E-value=36 Score=42.30 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=124.9
Q ss_pred ccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchH---HHHH---HHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000156 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS---VEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (2015)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~---~~~L---v~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~ 673 (2015)
+.+++-+.+...++.|..|..++..+.+.+..+.-.... .+.+ +..+. ..++|-...+.++.|+.+..++..
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiR--eaIddisaekfqasfelikciiah 469 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIR--EAIDDISAEKFQASFELIKCIIAH 469 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888899999999998888777543211111 1111 11111 124566677888899988887765
Q ss_pred c---CCCch----hHHHHHHHHHHhhhcch--hhhHHHHHHHH---HHHhhhChhHHHHHHHHHhhhCCChhHHHHHHHH
Q 000156 674 A---TKFPK----KCVVLCLLGISERVADI--KTRAHAMKCLT---TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 741 (2015)
Q Consensus 674 ~---~~~~~----~~~~~il~~LveKlgD~--K~r~~a~~~L~---~l~e~~~~~~Vl~~L~~~l~~~KnpKv~~~~l~~ 741 (2015)
+ +.|+. .|+..-++.+.-.-||. .++..|.+.+. .+.+.-..+.|-+.|..++..+|.|-+...-...
T Consensus 470 likehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggk 549 (666)
T KOG4825|consen 470 LIKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGK 549 (666)
T ss_pred HcchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHH
Confidence 4 23443 23344455555566663 45656655444 4445555666677777777678888877766667
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHhcC---CCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHH--------HHHHHH
Q 000156 742 MVSAVEDFGVSHLKLKDLIDFCKDTG---LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA--------LLSALD 810 (2015)
Q Consensus 742 L~~li~~fG~~~l~~k~li~~l~~~g---L~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~--------ll~~Le 810 (2015)
|..++...|...-- -++..+++.| ..+.--.+|.+|...++.+|+.-. .+...++|.|. +.+.+-
T Consensus 550 LarllkdlgkGrag--fiediakkfgVpaeehglndkreaafaiicdmtrdhQ--arsIgedLmpddskngriilvksef 625 (666)
T KOG4825|consen 550 LARLLKDLGKGRAG--FIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMPDDSKNGRIILVKSEF 625 (666)
T ss_pred HHHHHHhcCCCccc--hhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHH--HHHHHhhcCcccccCCceEEeHHHh
Confidence 77778877654211 0222222222 445556799999999999987543 33344444443 234444
Q ss_pred HHHhcCCC
Q 000156 811 AEYEKNPF 818 (2015)
Q Consensus 811 ~ef~k~~~ 818 (2015)
+.|.++.+
T Consensus 626 EgFAkiDg 633 (666)
T KOG4825|consen 626 EGFAKIDG 633 (666)
T ss_pred hhhhhccC
Confidence 44555543
No 201
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.18 E-value=31 Score=45.71 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000156 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (2015)
Q Consensus 329 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (2015)
.++..+.|.++.++..++-.++.---|-++. ..++.+++.- ..|.+..||.+|..||..++-. .+ ..++.+
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~a---VsD~nDDVrRaAVialGFVl~~---dp-~~~~s~ 593 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHVA---VSDVNDDVRRAAVIALGFVLFR---DP-EQLPST 593 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhccc---ccccchHHHHHHHHHheeeEec---Ch-hhchHH
Confidence 3445556888888887765554333333322 2233333322 4689999999999999876532 22 334444
Q ss_pred HHHh-hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 409 KTSV-KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 409 ~~~L-~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
..-| ++-||-||.+++-.|..+...++- +..+..|-.++.|+..-||..|.-+++.++-..-+
T Consensus 594 V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 594 VSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred HHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 4444 489999999999999987765542 44455666777899999999999999988865443
No 202
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=69.29 E-value=3e+02 Score=34.44 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCh-hHH
Q 000156 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIK 795 (2015)
Q Consensus 717 ~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~-~l~ 795 (2015)
.+++.+.+.+.+-.|..+....+..|..-+..++.. -.+.+++++.+ |+.+..+.||.+-+.+++.++...+. ...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~--~~~~~~~~~~k-Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE--LPKKVVDAFKK-GLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC--CCHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 455555555555556666666666666655555322 23678999988 69999999999999999998762222 244
Q ss_pred hhhhhccHHHHHHHHHHHh
Q 000156 796 GFLADVKPALLSALDAEYE 814 (2015)
Q Consensus 796 ~~L~~lkp~ll~~Le~ef~ 814 (2015)
.+...+-|.+.+.+++-+.
T Consensus 99 ~~~~~~~~~L~~~~~~~~~ 117 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASA 117 (339)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667777777777776554
No 203
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.24 E-value=24 Score=36.97 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.5
Q ss_pred hHHHHHHHHh-hcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 403 DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 403 ~il~~l~~~L-~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
.++..|+..| ++.++.+-.-++.=|+.++..++... +... --.-..++.+|++.|++||..|..|+..+|..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555 34466666677777888777775431 1111 11345789999999999999999999988753
No 204
>PF05536 Neurochondrin: Neurochondrin
Probab=69.23 E-value=59 Score=43.46 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=114.6
Q ss_pred HHHHHHHHhcCCCCCC-CChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhh-hHhHHHHHHHHhccCcHH
Q 000156 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (2015)
Q Consensus 305 aL~~L~~l~~~~ki~~-~~y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkk~~ 381 (2015)
|+--|..+...|.+.. .++-.-++.|.+.+. .....++..|++||..++. -....... ....+|.|.+.+.. .+.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 5555666666566554 456677888888887 3334789999999999993 33322222 23566677776666 556
Q ss_pred HHHHHHHHHHHHHHh-c--C-----CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----HHHHhhhhHHH
Q 000156 382 VAESLTQTLQAMHKA-G--C-----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (2015)
Q Consensus 382 V~~aa~~aL~al~~~-~--~-----~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-----~l~~~l~~l~p 448 (2015)
..+.+...+..++.. + + ..+..+++.|...+..-.-..|-+.+.+|..++...+.. .-...++.+..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 677777777776654 1 0 112345566665555444566778899999999877411 11234566666
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHHhCch
Q 000156 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 449 ~l~k~L-~Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
.+...+ +...+.-|+.|..+...+..++|.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 666666 5667889999999999999999975
No 205
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=49 Score=40.46 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=109.1
Q ss_pred hhhccCChHHHHHHHHHHHHHh---cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHH
Q 000156 292 EGVKATKWSERKDAVAELTKLA---STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (2015)
Q Consensus 292 ~~l~s~kWkeR~eaL~~L~~l~---~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 368 (2015)
+.+.+.+-..|.-+-..+..|+ .+-|+....-..+++.|...+.|...+|...|..+++.|+..-+-..+-.-..-+
T Consensus 215 sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 3344444444444444444333 1222322223358889999999999999888888888887543211111122347
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCCh--HhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcC--hhHHHH
Q 000156 369 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNL--VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS--KAAVLK 441 (2015)
Q Consensus 369 p~LL~klkdkk~~V~~aa~~aL~al~~~--~~~~l--~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~--~~~l~~ 441 (2015)
|.+++.+.+.--...-+-..|+..+.-+ +.... ..++..+..-|. ..|-.++..+...|-.+..... ...+..
T Consensus 295 P~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e 374 (550)
T KOG4224|consen 295 PLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE 374 (550)
T ss_pred hHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh
Confidence 8899999888777777777888877665 11111 123334556665 3455577777666665544222 222211
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 442 ~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.--+|.+..++-|+.-+||..-..|+..+.
T Consensus 375 --sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 375 --SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred --cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 335788889999999999999988887664
No 206
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=68.34 E-value=63 Score=43.26 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=108.4
Q ss_pred CCCCh-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHh
Q 000156 319 APGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKA 396 (2015)
Q Consensus 319 ~~~~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~ 396 (2015)
.++++ ..+++.|...++|..+.|...+++.+..+++-+.- .-.-+.++|.|-..+ +..+..|+..+..|+..+++.
T Consensus 382 ~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 382 PPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred ChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 34333 57889999999999999999999999999998873 333456677665554 778888999999999988876
Q ss_pred cC--CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 397 GC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 397 ~~--~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
+ ...-+.+..|..+.+...|.+...++....+++-..... .+ ....++|.+....-... -.+..+.
T Consensus 460 -lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev--~~~~VlPlli~ls~~~~--------L~~~Qy~ 528 (700)
T KOG2137|consen 460 -LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV--MAENVLPLLIPLSVAPS--------LNGEQYN 528 (700)
T ss_pred -HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee--ehhhhhhhhhhhhhccc--------ccHHHHH
Confidence 2 122233444556667788999999999888877655431 11 12445555554432221 1222233
Q ss_pred HHhCchHHHHHHHhccHHHHHHHHHH
Q 000156 474 KSVGMRPLERSIEKLDDVRRNKLSEM 499 (2015)
Q Consensus 474 ~~~Ge~~~~~~l~~Ld~~~~kkI~e~ 499 (2015)
+++. .++.+++.++..+.+|++..
T Consensus 529 ~~m~--~i~~ml~~ie~~~~~kLq~~ 552 (700)
T KOG2137|consen 529 KYMS--EIRLMLSAIEKPRANKLQKQ 552 (700)
T ss_pred HHHH--HHHHHHhhhhHHHHHHhhhc
Confidence 3332 25566667777777776553
No 207
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=68.15 E-value=16 Score=43.76 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=69.1
Q ss_pred HHHHHHHHHHh--cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh----hhhHHHHHHHHhcCCCH
Q 000156 386 LTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV----HKDYVPICMECLNDGTP 459 (2015)
Q Consensus 386 a~~aL~al~~~--~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~----l~~l~p~l~k~L~Ds~~ 459 (2015)
+..||..+++. +..-...+++++-.+|.+....||.-++.-+.++++.++....... -..+.|.++.|+...+-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 44566666655 2222356889999999999999999999999999999986544332 25688999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000156 460 EVRDAAFSVLAAIA 473 (2015)
Q Consensus 460 ~VR~aA~~al~~l~ 473 (2015)
+|-++|.+.+..+.
T Consensus 143 eVAkAAiesikria 156 (524)
T KOG4413|consen 143 EVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886554
No 208
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.77 E-value=28 Score=45.62 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=83.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhcccc--CCC---CChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhH
Q 000156 857 TLVKSLESPDWKVRLESIEAVNKILEEANKR--IQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (2015)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~--I~~---~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~ 931 (2015)
.+.+.+.+..+-.|-.-++.+..++.+-.+. ... ....+|+..|..||.|++..++..|++.+..|+..- ..+.
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~ 381 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTV 381 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-cccc
Confidence 3456678889999999999999998752111 111 114678999999999999999999999999988533 3333
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000156 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (2015)
Q Consensus 932 ~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g 968 (2015)
.--..++.-+..++.|....||.-|+.-+..+...-+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 3334678888999999999999999888877665443
No 209
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.56 E-value=5.3e+02 Score=36.25 Aligned_cols=188 Identities=16% Similarity=0.100 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHhhhc--chhhh-HhHHHHHH
Q 000156 302 RKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH--FSGSS-RFLLPVLL 372 (2015)
Q Consensus 302 R~eaL~~L~~l~~-~-~ki~~~~y~~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~--f~~~~-~~llp~LL 372 (2015)
+.+|+.-+..+++ . +...++-..-+++.|...-. ..|..-...|+.+++.|+..|.++ |...+ ..+++.++
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 4566666666653 2 33333333444444443322 446667788999999999988754 44333 35677888
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh---cCCChHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh--HHHHhhhhH
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDY 446 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~---~~~~l~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l 446 (2015)
--|.++--..|.-+...+..+..- ....+...++-...+|. ++.-.||.+++..|..++...... .+..+++.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 888999999999988888887732 11235566777788888 666789999999999988877543 356788999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHH
Q 000156 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (2015)
Q Consensus 447 ~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~ 493 (2015)
+..+.++.++-.-+. -..++.++...++++ +.||..+|-....
T Consensus 549 mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~La 591 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQNLA 591 (1010)
T ss_pred HHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHHHH
Confidence 999999998887765 455677777888876 7788777754433
No 210
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=66.12 E-value=2.3e+02 Score=37.73 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHH---HhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH------hHHHHHHH
Q 000156 340 AVAVEAIQAIGNLAR---GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKT 410 (2015)
Q Consensus 340 ~V~~~A~~~l~~La~---~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~------~il~~l~~ 410 (2015)
-+++.||.|+..+++ .|+..|.. ..+..+|+..+.+....|..++..++..++-.. .++. ..++.+..
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHH
Confidence 467888888877775 67777542 344555555668888889999999998876441 2222 24567777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 411 SVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 411 ~L~~Knp~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
.+.++.+.+|..++.+|...+=.+.... +..+-+.-...+....+|++.+|.+.+++.|-.+.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 8889999999999988887765554322 22333445667778889999999999998887654
No 211
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.83 E-value=7.3e+02 Score=37.56 Aligned_cols=296 Identities=12% Similarity=0.125 Sum_probs=163.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHH
Q 000156 611 KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLG 688 (2015)
Q Consensus 611 ~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--~~~~~~~~~il~~ 688 (2015)
.+=+-|.|+.-++.+.+-+.+.... + .+.+ + -|..+.+..+.++..+.+... .+...++...--.
T Consensus 813 p~v~~k~~~~ile~~~esi~~sk~~-r-~qsV-~----------~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~ 879 (2067)
T KOG1822|consen 813 PHVNNKIRLSILEHFPESIKQSKSA-R-QQSV-Q----------VNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALT 879 (2067)
T ss_pred cCccHHHHHHHHHHHHHHhhhhccc-h-hHHH-H----------HHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 3456677777777666555442111 0 1111 0 122344566667777766543 2333333332222
Q ss_pred HHh-hh--cchhhhHHHHHHHHHHHhhhChh----HHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCCCC---hhh
Q 000156 689 ISE-RV--ADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKD 758 (2015)
Q Consensus 689 Lve-Kl--gD~K~r~~a~~~L~~l~e~~~~~----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~l~---~k~ 758 (2015)
++. -+ .++++|=.+.+++..++...+-. .+.+.+++.+...+.|-.|.+-...+..+.+..|.- .+ +..
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~-~s~qhl~t 958 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI-GSGQHLNT 958 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC-CCchhccc
Confidence 222 22 23577777888888888766533 245556666666788888888887777777766542 22 222
Q ss_pred HHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCC
Q 000156 759 LIDFCKDTGLQSS-AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 837 (2015)
Q Consensus 759 li~~l~~~gL~~s-n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~ 837 (2015)
-+..+..+ ..|+ .|.|++.+...+..+-.-.|+-++.+.+. .+.....-+-. .|+. +
T Consensus 959 ~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~----tlsl~~~lLls----~p~~--~----------- 1016 (2067)
T KOG1822|consen 959 SVSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP----TLSLCLKLLLS----VPTS--H----------- 1016 (2067)
T ss_pred HHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH----HHHHHHHHcCC----CCcc--h-----------
Confidence 22244444 4555 46999999998887776666665544322 22222222111 1110 0
Q ss_pred CCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhH--------HHHHHhccccchH
Q 000156 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL--------FGGLRGRLYDSNK 909 (2015)
Q Consensus 838 ~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL--------~~~L~~rL~DsN~ 909 (2015)
+++...+...+. +=+....++...++.+.++...+- +-+..-.+..++.
T Consensus 1017 ----------~ev~q~~~R~~~-------------~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~ 1073 (2067)
T KOG1822|consen 1017 ----------VEVHQCYNRCFN-------------GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDP 1073 (2067)
T ss_pred ----------hhhhhhhccccc-------------cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCcc
Confidence 011100100000 000122333333456666532111 1222223455678
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000156 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (2015)
Q Consensus 910 ~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~ 967 (2015)
-+..+++.|++.+...-.+ .-....|++.+...+..+-...|.+...|++.++...
T Consensus 1074 lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1074 LNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred chHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 8889999999988765544 4567889999999999999999999999999988654
No 212
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=65.70 E-value=45 Score=34.42 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=52.6
Q ss_pred HHHHHHhcccc----chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000156 896 LFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (2015)
Q Consensus 896 L~~~L~~rL~D----sN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ 971 (2015)
++..+...+.| ....-...+++.++.+.+..|+.+..+...++..+-..+... .+|..+.+|-..+++.++.+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 44444555555 345567889999999999666555555555555555555444 899999999999999998555
Q ss_pred hHH
Q 000156 972 MVP 974 (2015)
Q Consensus 972 ll~ 974 (2015)
+-|
T Consensus 90 l~~ 92 (107)
T PF08064_consen 90 LGP 92 (107)
T ss_pred HHH
Confidence 444
No 213
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.55 E-value=3.4e+02 Score=38.62 Aligned_cols=132 Identities=14% Similarity=0.003 Sum_probs=88.3
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHH
Q 000156 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVP 974 (2015)
Q Consensus 899 ~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g----l~~ll~ 974 (2015)
.|..|..|....++...+.-|+.........|-. ..++-.+=-.|.|+...||..+..+|..+..+-. +..+..
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts 368 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS 368 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3456779999999998888888877776655532 2334444456789999999999999999998832 222322
Q ss_pred ----HHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000156 975 ----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2015)
Q Consensus 975 ----~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L 1036 (2015)
.|.+.. +...++.+|..-+..+...... .---..-+.+++.++-|.+..||.+|..-+
T Consensus 369 RFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~~---g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 369 RFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSSS---GLLSDKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred HHHHHHHHHH-hhhcchhHHHHHHHHHHHHhcc---cccChhHHHHHHHHHhccCcchHHHHHHHH
Confidence 344444 3333567776655554432111 111145578899999999999999987654
No 214
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=65.47 E-value=40 Score=34.80 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=55.4
Q ss_pred hHHHHHHhccccch--H--HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000156 895 ELFGGLRGRLYDSN--K--NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (2015)
Q Consensus 895 eL~~~L~~rL~DsN--~--~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~ 970 (2015)
.++..+...+.|.. + .-...+++.++.|.+.+|+....+..+++.-+...|. .+..|..+..|-..++..+.-+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 34555556666665 3 2367899999999998887766666666666666665 5569999999999999998754
Q ss_pred hh
Q 000156 971 KM 972 (2015)
Q Consensus 971 ~l 972 (2015)
.+
T Consensus 89 ~l 90 (107)
T smart00802 89 EL 90 (107)
T ss_pred HH
Confidence 43
No 215
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.04 E-value=86 Score=37.44 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=61.5
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc------cHHHHHHHHHHHHHHHHHHcCCC
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE------KNVQVQQQVIEVINYLAATATKF 677 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D------sN~qV~~~~Le~l~~l~~~~~~~ 677 (2015)
.-+-+.+..++-..|.+|++.|.+- .-.+-++.+|... |+| +|.+++...++....+..+-.-|
T Consensus 201 kvisal~dEs~~~~r~aAl~sLr~d--------sGlhQLvPYFi~f--~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 201 KVISALLDESDEQTRDAALESLRND--------SGLHQLVPYFIHF--FNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--------ccHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 3334445567888899999887621 1123344443221 222 45566666666666676654456
Q ss_pred chhHHHHHHHHH----Hh-hhcc-hh------hhHHHHHHHHHHHhhhChh
Q 000156 678 PKKCVVLCLLGI----SE-RVAD-IK------TRAHAMKCLTTFSEAVGPG 716 (2015)
Q Consensus 678 ~~~~~~~il~~L----ve-KlgD-~K------~r~~a~~~L~~l~e~~~~~ 716 (2015)
...++..++|.+ +. |+|+ ++ +|+.|...|.-++..++..
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 666666655554 43 5665 22 6888888888888877643
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.92 E-value=80 Score=41.71 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=78.2
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHHhhh------cchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hH
Q 000156 332 KLITDVNIAVAVEAIQAIGNLARGLRT------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LV 402 (2015)
Q Consensus 332 k~l~D~N~~V~~~A~~~l~~La~~L~~------~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~---l~ 402 (2015)
+.+......++-.-+.+++.+...+.+ .+.+.+..++..+-++|.|..+-+|..+.+.+..++.-++.. =.
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ 385 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRH 385 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHH
Confidence 344444555544445666666555443 344567788999999999999999999999988888752222 24
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000156 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 403 ~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2015)
.+...+...+++++.-||..+...+..++-++|=
T Consensus 386 ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 386 EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 6778888999999999999999999999988763
No 217
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.85 E-value=27 Score=48.74 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHhhccCChHHHHHHHHHHHHHHHHhC--hHHHHHhhcCCHHHHHh
Q 000156 1303 KNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG--EDIWRYVGKLTDAQKSM 1380 (2015)
Q Consensus 1303 KN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G--~~v~~~vg~Ls~~~~s~ 1380 (2015)
=-+..|+.|+++||.-|+.|.-. .-..--||.|+..++|++..||...+.+|--+|..-- +.+--|+...++.-.+|
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~-Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEI-FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHH-HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 34778999999999999999632 1222346999999999999999999999998887721 23444554544444444
Q ss_pred H
Q 000156 1381 L 1381 (2015)
Q Consensus 1381 l 1381 (2015)
.
T Consensus 378 a 378 (1048)
T KOG2011|consen 378 A 378 (1048)
T ss_pred H
Confidence 4
No 218
>PF05536 Neurochondrin: Neurochondrin
Probab=64.70 E-value=4.8e+02 Score=35.07 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=100.0
Q ss_pred hhhHHHHHHhccccch-HHHHHHHHHHHHHHHHHhChhhHHhhh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--
Q 000156 893 TGELFGGLRGRLYDSN-KNLVMATLITLGAVASAMGPAVEKSSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-- 968 (2015)
Q Consensus 893 ~~eL~~~L~~rL~DsN-~~V~~~Al~~l~~La~alg~~f~~~~~-~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-- 968 (2015)
+-+.++.|...+.... ..++..++.++..++ +...+....++ .-++.+...+.+ .+...+.|...+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchh
Confidence 3455667777764444 488899999999998 55555444433 366677776666 66677888788777776655
Q ss_pred --------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-------CCChh-hhHHHHHhhc-CCCChHHHHH
Q 000156 969 --------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-------FPDAA-HLLKPASIAM-TDKSSDVRKA 1031 (2015)
Q Consensus 969 --------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-------~~~~~-~ll~pl~~~L-~D~~~~VR~a 1031 (2015)
+..+++.+...+... .-..|-++|..|...+...+. .+.+. .+...+...| +...+.-|..
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 234455555555532 235688999999998887731 12222 2333355555 4556778999
Q ss_pred HHHHHHHHHHHcChhHH
Q 000156 1032 AEACIVEILRAGGQETI 1048 (2015)
Q Consensus 1032 A~~~L~~l~~~~G~~~~ 1048 (2015)
|..+...++.++|.+-+
T Consensus 252 al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHHhChHhh
Confidence 99999999999888753
No 219
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=61.46 E-value=84 Score=39.09 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHH-Hhc---ccCHH-HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHH
Q 000156 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKK-LIT---DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (2015)
Q Consensus 301 eR~eaL~~L~~l~~-~~ki~~~~y~~l~~~L~k-~l~---D~N~~-V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 374 (2015)
.|+|.|+-+...++ .+.... -...+++.|.. ++. ++.+. -..+.+.++..+.+.++..+.+++..++..+++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46777777777553 221100 12233333322 332 22111 1345588999999999998888888887777776
Q ss_pred hcc-------CcHHHHHHHHHHHHHHHHhcCCC---------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh
Q 000156 375 LKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (2015)
Q Consensus 375 lkd-------kk~~V~~aa~~aL~al~~~~~~~---------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~ 436 (2015)
.-+ .-|..|..-...|.++..+ |.. +..+++.+.-+++|.+..+-..+++.|..++.....
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 532 4578999999999988887 322 345677788889999999999999999998876644
No 220
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.57 E-value=1.1e+02 Score=36.70 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=71.9
Q ss_pred HhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCc---chHHHHHHHhhHHHHHHHHHh
Q 000156 1168 MKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKS---NTTCLLKVLEFLPELFDTLRD 1244 (2015)
Q Consensus 1168 ~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dt---N~~vl~k~Le~l~~l~~~l~~ 1244 (2015)
.-+|.+-+..++-.+|-+.|-+|++.|... +-+..++-||.-.|.|. |-+=+ ..|-.+-++.-.|-+
T Consensus 196 q~YF~kvisal~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl-~~LtTv~~m~~sLL~ 265 (450)
T COG5095 196 QMYFDKVISALLDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNL-EKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhc
Confidence 346777777777778888888999888654 22445556665555553 22212 223344445556778
Q ss_pred cCCCCCHHHHHhhhhHHHH-----hhcC-ChH----HHHHHHHHHHHHHhhccCc
Q 000156 1245 EGYSLTESEAAVFLPCLVE-----KSGH-NIE----KVREKMRELTKQIVNFYSA 1289 (2015)
Q Consensus 1245 ~~y~l~~~Ea~~~lP~L~~-----K~Gd-~k~----~vr~~v~~il~~i~~vy~~ 1289 (2015)
+.|.|-|-..-.++|.++. |+|. ++| .+|.-...+++-++.-||.
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH
Confidence 8999999998888887643 6655 666 4677666666666665543
No 221
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=60.51 E-value=1e+02 Score=34.09 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.1
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHhc
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT 335 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~~~----ki~~~~y~~l~~~L~k~l~ 335 (2015)
.....+.+.+=++|.+|++.|..+++.+ .+....|..++.+|.+.+.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 4567789999999999999999998643 3455689999999987653
No 222
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=60.41 E-value=8.9 Score=32.48 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 444 ~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
+.+...+.+.+.|+.+.||++|.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998763
No 223
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.18 E-value=8.6e+02 Score=36.16 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHh----cCCCChhHHHHHHHHHHHHhccC--C-CCCChhhhHHHHHhhcCCC
Q 000156 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLTGL--S-GFPDAAHLLKPASIAMTDK 1024 (2015)
Q Consensus 952 Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~----~~k~~p~~R~~~l~~L~~~l~~~--~-~~~~~~~ll~pl~~~L~D~ 1024 (2015)
-..++..|...+..+..-..+.+.+...++ +. .+..+|..++.|+...+-.. . ......++-+-+.+.|+|.
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~-~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS-STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 334444555555555443444444444433 33 25789999999987654322 1 1223456666688889999
Q ss_pred ChHHHHHHHHHHHHHHHHcChhH
Q 000156 1025 SSDVRKAAEACIVEILRAGGQET 1047 (2015)
Q Consensus 1025 ~~~VR~aA~~~L~~l~~~~G~~~ 1047 (2015)
.-+||+.|++||..++..--...
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999887655443
No 224
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=58.70 E-value=2e+02 Score=36.60 Aligned_cols=173 Identities=15% Similarity=0.066 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhcc
Q 000156 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE 377 (2015)
Q Consensus 298 kWkeR~eaL~~L~~l~~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd 377 (2015)
.=-||..|++-+++++..++-...--..++++|..+..+..-..+..|+.++.+|+-.-. +.--. -.-+..|++.+.|
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P-~lv~~-~gG~~~L~~~l~d 158 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP-ELVAE-CGGIRVLLRALID 158 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH-HHHHH-cCCHHHHHHHHHh
Confidence 345899999999998743211111123688888888887777788888888888774321 11111 1223555666666
Q ss_pred CcHHHHHHHHHHHHHHHHhcC----CChHhHHHHHHHHhh-------cCChH--HHHHHHHHHHHHHHhcChhH-HHHhh
Q 000156 378 KKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVK-------NKVPL--VRSLTLNWVTFCIETSSKAA-VLKVH 443 (2015)
Q Consensus 378 kk~~V~~aa~~aL~al~~~~~----~~l~~il~~l~~~L~-------~Knp~--vR~~~l~~L~~~l~~~~~~~-l~~~l 443 (2015)
....+.+++..++-.++.+.. ....--++.+++.+. ..+.. .-..+...+..++..|+.=- +...-
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 544577777777777776510 011111333333322 12221 22355666777888886311 00000
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 444 KDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 444 ~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
..-+..++.+|.-+++++|+.-.+.|-.+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 13456677888889999998877665433
No 225
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=58.31 E-value=62 Score=33.46 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhcc
Q 000156 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (2015)
Q Consensus 416 np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld 489 (2015)
...-|..++.-+..+++-.+ ..+...++.++-.|..+|+ .++.|..|.+|...+.+.+.++.+.++++..-
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~ 98 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIF 98 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34668888888888887544 3455666777888888886 66799999999999999999988888887653
No 226
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=58.01 E-value=7.2e+02 Score=34.89 Aligned_cols=182 Identities=18% Similarity=0.191 Sum_probs=111.9
Q ss_pred cchHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHH------------------
Q 000156 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT------------------ 915 (2015)
Q Consensus 854 L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~A------------------ 915 (2015)
+..-++..+-|+.-.+|..|+..+..++.-...... +.|+.++..--.|.-..++..+
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~----~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA----FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch----HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 344566778899999999999999888862111110 1111111111111111111000
Q ss_pred --H----HHHHHH-HHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh---cCC
Q 000156 916 --L----ITLGAV-ASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT---DAK 984 (2015)
Q Consensus 916 --l----~~l~~L-a~alg~~f~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~---~~k 984 (2015)
+ +++... .+.||+.=..+-+-++-.++..+. |.+..|+.++...+......|.....+|...-.|+ ...
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence 0 011111 122333323334556777888888 99999999999999999999998888886444443 222
Q ss_pred CChhHHHHHHHHHHHHhccCCCCC-ChhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 985 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 985 ~~p~~R~~~l~~L~~~l~~~~~~~-~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
. ..+|...++-|.+.+-..+... -...++..++..++|...+|-+.|.+.+..+.
T Consensus 629 ~-vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 629 M-VSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred c-hHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 2 4578889999988765444322 23567788888999999999999998665443
No 227
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.99 E-value=36 Score=35.81 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred cccHHHHHhhhc-CCChhhHHHHHHHHHHHHHhhCCCcccccchH-HHHHHhhccCChHHHHHHHHHHHHHHHHh-C---
Q 000156 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (2015)
Q Consensus 1290 skvf~~l~~gl~-sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l-~~ia~~i~drd~~VR~AAl~~l~~~y~~~-G--- 1363 (2015)
.+++|++.+|++ ++++..|..|.-.++.+..+..++.. -..++ +.|++.....+. ...|+.||+.+|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999998 99999999999999999988887631 12232 555555544443 577999999999877 3
Q ss_pred --hHHHHHhhcCCH
Q 000156 1364 --EDIWRYVGKLTD 1375 (2015)
Q Consensus 1364 --~~v~~~vg~Ls~ 1375 (2015)
+.+++.+-.++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 236666666554
No 228
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=57.07 E-value=50 Score=36.94 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000156 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (2015)
Q Consensus 868 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L 945 (2015)
..|+.|.+.+..++..+..++. ..+++..+..-|+| ...|+..++.++..++......+.+.+..++.++-..|
T Consensus 42 elRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999985433443 57888999999999 99999999999999987776666666667776665555
No 229
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=55.44 E-value=1.1e+02 Score=35.42 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh--cCChH
Q 000156 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK--NKVPL 418 (2015)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~--~Knp~ 418 (2015)
+-...+.+++.+...+|....++...++..|-+.-.+..-..++.+..|+.+.+.. .+++.++..+=-.+. ++...
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a--mGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA--MGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH--CCHHHHHHHCCCCccCCCcCCc
Confidence 45666889999999999998888888888888877777778899999999999986 788888775532222 23333
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000156 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (2015)
Q Consensus 419 vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 452 (2015)
-|.-.+-.|...+.+. .+.-+...++|....
T Consensus 94 ~raWLLPlLr~~i~~~---~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA---SLSFFVEEFLPLARR 124 (198)
T ss_pred ccchhHHHHHHhccCC---ChHHHHHHHHHHHHH
Confidence 3433344444333332 233334555554443
No 230
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=54.00 E-value=1.4e+02 Score=37.19 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHh
Q 000156 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 399 ~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~L~-Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
..-.+++..|..-|.|++|.|-..++..+..|..+|++..-. =+...+...|.++++ -+++.|++.-+..+......+
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 344678888888999999999999999999999999865322 234677888888888 788999999999988888877
Q ss_pred CchHHHHHHHhc
Q 000156 477 GMRPLERSIEKL 488 (2015)
Q Consensus 477 Ge~~~~~~l~~L 488 (2015)
..+.-..++..|
T Consensus 121 K~Dp~lsLi~~l 132 (462)
T KOG2199|consen 121 KKDPSLSLISAL 132 (462)
T ss_pred ccCcchhHHHHH
Confidence 655434455444
No 231
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.60 E-value=1.4e+02 Score=37.58 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=65.9
Q ss_pred HHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCCCCCHHH
Q 000156 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1253 (2015)
Q Consensus 1174 ~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~l~~~E 1253 (2015)
.+.+.|.+.+...|.+|++.|... ..+-..+--+++|++-...-+..+ -...|.++-.++..|..+.+-.-|..
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~tD-----~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRTD-----PGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhccC-----CCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 466667778889999999988654 222222333444443322211111 23334555556667888888888888
Q ss_pred HHhhhhHHHHhh-----c-----CChHHHHHHHHHHHHHHhhccCcc
Q 000156 1254 AAVFLPCLVEKS-----G-----HNIEKVREKMRELTKQIVNFYSAT 1290 (2015)
Q Consensus 1254 a~~~lP~L~~K~-----G-----d~k~~vr~~v~~il~~i~~vy~~s 1290 (2015)
.-.|+|.++..+ | +..-.+|+---.++..+|.-|..+
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999888655 2 223356666666666666555443
No 232
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=53.54 E-value=82 Score=35.15 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCC----Ch-----hhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 866 DWKVRLESIEAVNKILEEANKRIQPA----GT-----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 866 ~Wk~R~eale~L~~ll~~a~~~I~~~----~~-----~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
+++.|.=|++.+..+++..+..+... .+ .++...|.+.+...+..+...+++++..+...++..++.-.+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999998654444421 11 2444555555544558899999999999999999999999999
Q ss_pred HHHHHHHHhCCC-c--HHHHHHHHHHHHHHHH
Q 000156 937 VLSDILKCLGDN-K--KHMRECTLTVLDAWLA 965 (2015)
Q Consensus 937 llp~ll~~L~D~-k--~~Vr~aa~~aL~~i~~ 965 (2015)
+++.++..+-++ . ...|..+.+++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 999998844332 2 3577777777777765
No 233
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.63 E-value=2.8e+02 Score=37.61 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=105.0
Q ss_pred ChH-HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000156 322 DFT-EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2015)
Q Consensus 322 ~y~-~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~ 399 (2015)
+|. .++..|..++. -.+..+...-++=+..|.+.+... .....++|-|...+++....+++.+...+-.+... .
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--i 420 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--I 420 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--c
Confidence 443 55667777776 444444444445555556665543 45778999999999999999999999999888876 2
Q ss_pred Ch----HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 400 NL----VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 400 ~l----~~il~~l~~-~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.+ ..|+|.|.. ++++-+..+|..++-.++.+++..++... -+.+..+.+|+.=.+|.+--.....+..++-
T Consensus 421 D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 421 DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV----LDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 22 356777754 56788999999999999999987766544 3345667788888888887777777776654
Q ss_pred H
Q 000156 475 S 475 (2015)
Q Consensus 475 ~ 475 (2015)
.
T Consensus 497 ~ 497 (700)
T KOG2137|consen 497 I 497 (700)
T ss_pred h
Confidence 4
No 234
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=1.6e+02 Score=39.84 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=103.3
Q ss_pred hhhhhhc-cCChHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000156 289 GFWEGVK-ATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2015)
Q Consensus 289 ~f~~~l~-s~kWkeR~eaL~~L~~l~~~~ki~--~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2015)
.+.++++ ++=..+|++|+..|.++...-|+. ......++..|..= -.+.-++..++.++--+.. .+=.+
T Consensus 26 kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~---~dd~~--- 97 (970)
T KOG0946|consen 26 KLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTS---HDDSP--- 97 (970)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHh---cCcch---
Confidence 4555554 577789999999998887532222 12233344444331 1233345555444433322 11000
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH---Hh
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL---KV 442 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~---~~ 442 (2015)
-+ .++++ .+.+-.....+.++.+ .+.+..++..+.+.+-.||..+.+.+..++.+-+.. +. -.
T Consensus 98 ----~v---~dds~-qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~ 163 (970)
T KOG0946|consen 98 ----EV---MDDST-QSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLV 163 (970)
T ss_pred ----hh---cccch-hhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHH
Confidence 00 12333 3334344444555543 566777888999999999999999999999876643 22 23
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 443 l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
++.=+..++..|.|+...+|+.|.-.|..+.+--+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 46667789999999999999999988887765544
No 235
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.11 E-value=8.2e+02 Score=33.50 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=51.7
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000156 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (2015)
Q Consensus 972 ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~ 1043 (2015)
+++.+.++++++ .--+|..+|.+++..=..++...-.........+||.+.+-.||-.|.-++..++.+-
T Consensus 461 iv~hv~P~f~s~--ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 461 IVNHVIPAFRSN--YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHhhHhhcCc--ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 344566777765 2578999999998763334433345666777999999999999999999998887665
No 236
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.87 E-value=1.4e+02 Score=37.48 Aligned_cols=95 Identities=18% Similarity=0.035 Sum_probs=61.6
Q ss_pred hHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHH----hcChhHH
Q 000156 366 FLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TSSKAAV 439 (2015)
Q Consensus 366 ~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~-~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~----~~~~~~l 439 (2015)
.++..++..+ ||.+..+..++..++..++.+. ..-.+.+++.+..++++|.+.+|..-+..+..++. .......
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~ 101 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA 101 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH
Confidence 3333333333 6888888888888887777652 23346789999999999999999999888888886 1111222
Q ss_pred HHhhhhHHHHHHHHhcCCCHH
Q 000156 440 LKVHKDYVPICMECLNDGTPE 460 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~ 460 (2015)
...++.+...+.++...+.+.
T Consensus 102 ~~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 102 EPFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHHhCCCCc
Confidence 234444444444554555444
No 237
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.44 E-value=3.8e+02 Score=33.41 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=72.8
Q ss_pred HhHHHHHHHHhccCcHHHHHHH-HHHHHHHHHh----cCCChHhHHHHHHHHh----h---cCChHHHHHHHHHHHHHHH
Q 000156 365 RFLLPVLLEKLKEKKPTVAESL-TQTLQAMHKA----GCLNLVDVVEDVKTSV----K---NKVPLVRSLTLNWVTFCIE 432 (2015)
Q Consensus 365 ~~llp~LL~klkdkk~~V~~aa-~~aL~al~~~----~~~~l~~il~~l~~~L----~---~Knp~vR~~~l~~L~~~l~ 432 (2015)
..++.++|.-..+..+..|++- -.++.+++.. ...-+..+++.+.... . +.-|..|.+-..+|..+.+
T Consensus 70 ~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~ 149 (319)
T PF08767_consen 70 PPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINE 149 (319)
T ss_dssp HHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHH
Confidence 3334444444455545444432 2233333333 1223445555544322 1 3569999999999999998
Q ss_pred hcChhHHH---HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 433 TSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 433 ~~~~~~l~---~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.+....+. ...+.++..+.-++.+.+.+|-+.+.+++..+..-+..
T Consensus 150 ~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 150 HCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 87654321 44688999999999999999999999999998877654
No 238
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=50.40 E-value=1.9e+02 Score=41.90 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=60.1
Q ss_pred HHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcCcchHHHHHHHhhHHHHHHHHHhcCC-CCCHHHHHhhhhHHHHhhcCC
Q 000156 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY-SLTESEAAVFLPCLVEKSGHN 1268 (2015)
Q Consensus 1190 al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~dtN~~vl~k~Le~l~~l~~~l~~~~y-~l~~~Ea~~~lP~L~~K~Gd~ 1268 (2015)
|-..|..++.+ |.| ++.|+..|=+-.++.|...++..+.++ +.+.+| .+..+ .+|...+.|+||+
T Consensus 490 gr~AL~nLL~~-------N~d-Ll~~~IdrCYss~~~va~gYF~vlaev---~~~~~~~~~~~~---~LL~L~Lfklg~~ 555 (1120)
T PF14228_consen 490 GRRALKNLLEH-------NPD-LLDWVIDRCYSSSPRVAEGYFTVLAEV---FSEREYPPCPFW---ELLNLVLFKLGDE 555 (1120)
T ss_pred HHHHHHHHHHh-------hHH-HHHHHHHHhcCCChhHHHHHHHHHHHH---HHcCCCCCCCHH---HhHHHHHHhhcCC
Confidence 44455555443 445 688988887778899988877777665 444544 45544 4778889999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 000156 1269 IEKVREKMRELTKQIVN 1285 (2015)
Q Consensus 1269 k~~vr~~v~~il~~i~~ 1285 (2015)
...||..-..+|+.+..
T Consensus 556 ~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 556 SSEIRSKAMQLLRALEE 572 (1120)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999987764
No 239
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=49.45 E-value=8.7e+02 Score=33.31 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHhhhChhHHHHHHHHHhh-hCCChhHHHHHHHHHHHHHHH-hCCCCC---C--
Q 000156 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK-DHKNPKVLSEGILWMVSAVED-FGVSHL---K-- 755 (2015)
Q Consensus 683 ~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~~~~Vl~~L~~~l~-~~KnpKv~~~~l~~L~~li~~-fG~~~l---~-- 755 (2015)
...+..+.+.-.|+-+|.+|.+-+..+-+.-+ .++-+++.+. ..+++-|+--|++.|.+.+.+ ++.... +
T Consensus 6 Eqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~---aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 6 EQAVNAVNDPRVDSATKQQAIEYLNQIKSSPN---AWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred HHHHHhhCCCcccHHHHHHHHHHHHhhcCCcc---HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 33444555555566678888777776655433 2333333332 348999999999999999975 342222 1
Q ss_pred hhhHHHHHHhcCCCCC----chhHHHHHHHHHHHHHHHhChhHHh-hhhh
Q 000156 756 LKDLIDFCKDTGLQSS----AAATRNATIKLLGALHKFVGPDIKG-FLAD 800 (2015)
Q Consensus 756 ~k~li~~l~~~gL~~s----n~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~ 800 (2015)
-+.++.|++-.-+++. -+-+|..+.+++..|+.+.-++.++ |+.|
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~d 132 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDD 132 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 2457777764325555 3569999999999999888777654 4444
No 240
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=49.24 E-value=29 Score=28.84 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000156 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~~~VR~aA~~al~~l~ 473 (2015)
-.+|.|+++|.+.+++||..|.-+|+.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999998764
No 241
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=2e+02 Score=42.83 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=84.6
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHH-HHHHHHHHHHh-cCCC----hHhHHHH
Q 000156 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES-LTQTLQAMHKA-GCLN----LVDVVED 407 (2015)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~a-a~~aL~al~~~-~~~~----l~~il~~ 407 (2015)
+...|+..+-.+..+++.|+...+.. +++..+...+++++++.+..++.. -.-|+..+.++ +... +..-+..
T Consensus 885 l~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 885 LINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 34667777777888888888876653 778899999999999988776554 44566667777 3222 2232334
Q ss_pred HHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh---cCCCHHHHHHHHHHH
Q 000156 408 VKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVL 469 (2015)
Q Consensus 408 l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L---~Ds~~~VR~aA~~al 469 (2015)
++.-.+ +..|.|+.-++..+...+....+-. ..+....+-.+.+++ .+++.+|+..=-+|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 444444 5667999999999998888766542 222222233333332 455556655544444
No 242
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=47.80 E-value=2.1e+02 Score=34.31 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=64.9
Q ss_pred HHHHHHHHhhccCccc-------cHHHHHhhh-cCCChhhHHHHHHHHHHHHHhhCCCc--ccccchHHHHHHhhccCCh
Q 000156 1276 MRELTKQIVNFYSATK-------TLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDG 1345 (2015)
Q Consensus 1276 v~~il~~i~~vy~~sk-------vf~~l~~gl-~sKN~r~R~ecl~~l~~li~~~g~~~--~~~~k~l~~ia~~i~drd~ 1345 (2015)
.-.+++.+|.++|+++ ....+++=+ .+..+.....||+-+.+++-.+..+. +.....+..|+.++.++..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 3468999999999986 345566667 55678999999999999988776654 2333457899999988765
Q ss_pred HHHHHHHHHHHHHHHHhChH
Q 000156 1346 EIRKAALNTLATGYKILGED 1365 (2015)
Q Consensus 1346 ~VR~AAl~~l~~~y~~~G~~ 1365 (2015)
. |+-=+.|+.-+|.++++.
T Consensus 191 ~-~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 191 D-RELRLKCIEFLYFYLMPE 209 (257)
T ss_pred c-HHHhHHHHHHHHHHHccc
Confidence 2 444466777777776553
No 243
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=47.74 E-value=72 Score=43.53 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=74.3
Q ss_pred HHHHHHHHHhc----ccCHHHHHHHHHHHHHHHHHhhhc----------chhhhHhHHHHHHHHhccCcHH-HHHHHHHH
Q 000156 325 EVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH----------FSGSSRFLLPVLLEKLKEKKPT-VAESLTQT 389 (2015)
Q Consensus 325 ~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~----------f~~~~~~llp~LL~klkdkk~~-V~~aa~~a 389 (2015)
+++..+...+. ..+..+...|+-+++.|+...... .......+++.+...|++.... =.+....+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 45555544444 345668888899999999866544 3444555666666655521110 01333444
Q ss_pred HHHHHHhcCCChHhHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcC--CCHHHHHH
Q 000156 390 LQAMHKAGCLNLVDVVEDVKTSVKNK---VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND--GTPEVRDA 464 (2015)
Q Consensus 390 L~al~~~~~~~l~~il~~l~~~L~~K---np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~D--s~~~VR~a 464 (2015)
|.++-. .+...+++.+...+..+ ...+|..++..|.++...++ ..+.+.+.+.+.| .+++||-|
T Consensus 511 LkaLgN---~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--------~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 511 LKALGN---LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--------EKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHH---HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--------HHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HHHhhc---cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--------HHHHHHHHHHhcCCCCChhHHHH
Confidence 555542 34567788787777655 57888888888776533332 2334455555533 35689999
Q ss_pred HHHHH
Q 000156 465 AFSVL 469 (2015)
Q Consensus 465 A~~al 469 (2015)
|+..|
T Consensus 580 A~~~l 584 (618)
T PF01347_consen 580 AYLIL 584 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97554
No 244
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.69 E-value=4.4e+02 Score=32.57 Aligned_cols=175 Identities=13% Similarity=0.155 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHHh-cCCCCCCC-ChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---hhhcchhhhHhHHHHH
Q 000156 297 TKWSERKDAVAELTKLA-STKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVL 371 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~-~~~ki~~~-~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~~~~~llp~L 371 (2015)
.+-..=+.+|+.|..+. +.|++... ...-++..|..-..|... --..++++..-+.+ -|..|-. -.++|-|
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dl--t~~~~~~v~~Ac~~hE~nrQ~~m~--~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEV--TLLTLQWLQKACIMHEVNRQLFME--LKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHH--HHHHHHHHHHHHHHhHHHHHHHHH--hhHHHHH
Confidence 33334456777777777 57877653 333444444443334443 23334444433321 1222211 1234444
Q ss_pred HHH-hccCcHHHHHHHHHHHHHHHHh-------cCC-ChH------hHHHHHHHHhhc-CChHHHHHHHHHHHHHHHhcC
Q 000156 372 LEK-LKEKKPTVAESLTQTLQAMHKA-------GCL-NLV------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSS 435 (2015)
Q Consensus 372 L~k-lkdkk~~V~~aa~~aL~al~~~-------~~~-~l~------~il~~l~~~L~~-Knp~vR~~~l~~L~~~l~~~~ 435 (2015)
+.- ..+.|..++.++..++.++.-- ++. +.. .++-.+.++++. -.|.+-...+..|.++.-+
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-- 272 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-- 272 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH--
Confidence 423 3566666666777888877532 111 111 123333444441 2255544554444443211
Q ss_pred hhHHHHhhhhH-----HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCchHH
Q 000156 436 KAAVLKVHKDY-----VPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMRPL 481 (2015)
Q Consensus 436 ~~~l~~~l~~l-----~p~l~k~L~Ds-~~~VR~aA~~al~~l~~~~Ge~~~ 481 (2015)
. ...+.+ +..++.|+.|+ ...+|..+.+|+..+-...|...+
T Consensus 273 -~---E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 273 -D---EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred -H---HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 0 111222 34688999994 558999999999999999998644
No 245
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=46.67 E-value=1.3e+02 Score=41.40 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=93.2
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cC
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC 398 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~--~~ 398 (2015)
.+|....+-+...+..- -++...|+.+|-.||...+....-.-+.+++.|.+.+...+..+.-.+..+|..+.-+ +.
T Consensus 246 ~~~~~~~kk~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK 324 (708)
T PF05804_consen 246 KDYEKELKKLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK 324 (708)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45655555555555543 3456678888999998766555555678888899989888877777777777766432 10
Q ss_pred --CChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 399 --LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 399 --~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
..-..+++.|..-+++++..+...++..|..+ .. .+..-...+ --++|.++..|.|.+ .|..+...|
T Consensus 325 ~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iL 394 (708)
T PF05804_consen 325 DEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL-SF-DPELRSQMVSLGLIPKLVELLKDPN--FREVALKIL 394 (708)
T ss_pred HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-Cc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHH
Confidence 11235788888889999999999999888764 22 111111112 237788888888753 454444443
No 246
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=46.54 E-value=4.6e+02 Score=29.26 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChH----hHHHHHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHH
Q 000156 381 TVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMEC 453 (2015)
Q Consensus 381 ~V~~aa~~aL~al~~~~~~~l~----~il~~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~ 453 (2015)
.+-.-+-.|+..++.+|.++.+ .++..+...... .++.+-+.++.+|..++...+.. .... -+.-++.+...
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHHH
Confidence 4445555666677777544543 455666666553 35889999999999988765431 1111 13457789999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhc
Q 000156 454 LNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (2015)
Q Consensus 454 L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~L 488 (2015)
|.++++++...|...+.++....++..-..+.+.|
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l 145 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDSKRKEIAETL 145 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999998877764333444444
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=45.88 E-value=9.5e+02 Score=32.72 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhccccc---hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000156 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS---NKNLVMATLITLGAVASAMGPAVEKSSKGVLS 939 (2015)
Q Consensus 863 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL~Ds---N~~V~~~Al~~l~~La~alg~~f~~~~~~llp 939 (2015)
...+-..+.-+|..|+.+= ..+.+..|...+.+. ...++..|+.++..++. .+-..+.+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~-------~~~~~v~~ 561 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK-------HCPEKVRE 561 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG-------T-HHHHHH
T ss_pred hccCHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhh-------cCcHHHHH
Confidence 3445566667777776541 245677777766444 56677777776664431 22234444
Q ss_pred HHHHHhCCCc--HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHH
Q 000156 940 DILKCLGDNK--KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (2015)
Q Consensus 940 ~ll~~L~D~k--~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L 997 (2015)
.++..+.|.. ..||-||.. .++..-+-..++..|...+..++ +.+++..+..+|
T Consensus 562 ~l~~I~~n~~e~~EvRiaA~~---~lm~~~P~~~~l~~i~~~l~~E~-~~QV~sfv~S~L 617 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAAYL---ILMRCNPSPSVLQRIAQSLWNEP-SNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHHHH---HHHHT---HHHHHHHHHHHTT-S--HHHHHHHHHHH
T ss_pred HHHHHhcCCCCChhHHHHHHH---HHHhcCCCHHHHHHHHHHHhhCc-hHHHHHHHHHhc
Confidence 4555554432 348888643 34444355566777777776543 567777766655
No 248
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=45.32 E-value=4.3e+02 Score=34.48 Aligned_cols=207 Identities=15% Similarity=0.160 Sum_probs=108.3
Q ss_pred CCCCccccccc---chHHHHhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc-----ccchHHHHHHH
Q 000156 844 GLPREDISGKF---TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMAT 915 (2015)
Q Consensus 844 ~lprvdIs~~L---~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL-----~DsN~~V~~~A 915 (2015)
.+++.||...+ ...|+..+.-..-.+-.=-|..+..++.-....+.|. ...++..|...+ +.+|..-..-.
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 45556665433 3344444422211221223445555554333455554 255555555444 56788888888
Q ss_pred HHHHHHHHHHhCh-h---hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHH-HhcC
Q 000156 916 LITLGAVASAMGP-A---VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTA-LTDA 983 (2015)
Q Consensus 916 l~~l~~La~alg~-~---f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g-------l~~ll~~l~~~-L~~~ 983 (2015)
.++++.+.+.... + ...+-..++|.+...|...-....-.+.+-|..+.+... +..++|.+... +=..
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~ 172 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER 172 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc
Confidence 8888888876543 2 225667889999999988877777888888888887654 23334432211 1111
Q ss_pred CCC-hhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000156 984 KLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (2015)
Q Consensus 984 k~~-p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~~~~~~~l~ 1053 (2015)
+.| |.+=.-+-.++.+.-........+..++-.+-+++..+..| ..+...|..++.+++.+.+.++++
T Consensus 173 ~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~ 241 (435)
T PF03378_consen 173 RGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK 241 (435)
T ss_dssp TTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH
T ss_pred CCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH
Confidence 111 11111111222221111211223344444455677777665 568899999999999998888763
No 249
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=45.27 E-value=1.5e+02 Score=31.81 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (2015)
..+.+++..+...+.. +..-....+.++..+.+.+.. |. .. .-...-+.....++...
T Consensus 22 ~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-~~---~~----------~~~~~r~~~l~~~l~~~------- 79 (148)
T PF08389_consen 22 QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-FR---RS----------SLSQERRRELKDALRSN------- 79 (148)
T ss_dssp TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-SH---CC----------HSHHHHHHHHHHHHHHH-------
T ss_pred hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-hh---ch----------hhhHHHHHHHHHHHHHH-------
Confidence 3344455555555554 344555666777776665543 10 00 00011122222222222
Q ss_pred hHhHHHHHHHHhhc---C-ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000156 401 LVDVVEDVKTSVKN---K-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (2015)
Q Consensus 401 l~~il~~l~~~L~~---K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al 469 (2015)
.+.+++.+...+.. . +..+...+++.+..++.-.+...+.. ..+++.+...+ .+++.|++|.+||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 23445545554442 2 27888899998888887444444322 45888999999 5555699999986
No 250
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=44.82 E-value=1.1e+03 Score=33.38 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhccCCCCchHHH---hhhhhhH----hhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhH-HHHHHHHHH
Q 000156 29 NEANIDLAALCDSITDPKDNRIR---ELGPLFK----KTVADSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDAIAA 100 (2015)
Q Consensus 29 ~~ayeeL~~~~~~~~d~~~~~~~---~~~~~~~----k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~~-~~v~~~Lie 100 (2015)
+.|++.|.+.+...+|- ...|. ...+.|+ -+-.-..+.+|..+|+.+.....+..- ....+ ..++..|..
T Consensus 1743 ~m~LtAL~Nli~~nPdl-asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDL-ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHhhCcch-hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHHH
Confidence 46788888888765542 11221 1223332 234567789999999988766544321 11111 124444443
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHH--------Hh-hcCChhhHHHHHHHHHHHHH--HhCCCCcChhHH
Q 000156 101 KCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK--------AI-KNKVAKAVVPAIDVMFQALS--EFGAKIIPPKRI 169 (2015)
Q Consensus 101 K~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~--------~~-~~KnpKv~~~~l~~L~~~l~--~fG~~~i~~k~i 169 (2015)
- |.+-|..|+.+.+.+-.+. ..++...+++.. .| ....+.+++++-..+..+.. -.|++|- -.+
T Consensus 1821 l-LHS~PS~R~~vL~vLYAL~--S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~--ITL 1895 (2235)
T KOG1789|consen 1821 L-LHSQPSMRARVLDVLYALS--SNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT--ITL 1895 (2235)
T ss_pred H-HhcChHHHHHHHHHHHHHh--cCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee--eeh
Confidence 3 6678999999999876654 334433444322 22 34557778888777766544 4777651 246
Q ss_pred HhhhhhhhcCCChhHHHHHHHHHHHHHHHh
Q 000156 170 LKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (2015)
Q Consensus 170 l~~l~~ll~~~d~~VR~~a~~l~~ely~~l 199 (2015)
++.||..|-+ ..|+.- ...+.++.-.
T Consensus 1896 ~kFLP~~f~d---~~RD~P-EAaVH~fE~T 1921 (2235)
T KOG1789|consen 1896 IKFLPEIFAD---SLRDSP-EAAVHMFEST 1921 (2235)
T ss_pred HHhchHHHHH---HHhcCH-HHHHHHHhcc
Confidence 6777777765 334443 3344444433
No 251
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=44.74 E-value=1.8e+02 Score=36.57 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=123.9
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHhhccCCC--CchHHHhh---hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhch--hhh
Q 000156 16 WEDRLLHKNWKVRNEANIDLAALCDSITDP--KDNRIREL---GPLFKKTVADSNAPVQDKALDALIAYLKAADA--DAG 88 (2015)
Q Consensus 16 l~erl~~k~WK~R~~ayeeL~~~~~~~~d~--~~~~~~~~---~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~--~~~ 88 (2015)
+++..-.+.|-.|..++-.+.+.|...+-. .+..|+.. ...++..+.|--+.+-.+.++.+..++...=. .+.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 456677899999999999999999764321 22223222 34556667777777777777666555443211 122
Q ss_pred hh-----HH-HHHHHHHHhhcCCChhHHHHH---HHHHHHHHhhhhhhhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHH
Q 000156 89 RY-----AK-EVCDAIAAKCLTGRPKTVEKA---QAVFMLWVELEAVDVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSE 158 (2015)
Q Consensus 89 ~~-----~~-~v~~~LieK~l~~k~~~k~~a---~~~ll~~~E~~~~~~v~~~L~~~~-~~KnpKv~~~~l~~L~~~l~~ 158 (2015)
++ +. .+|..+.-. .+.-..++..| ++.+-.|.|...-+.|-+.|..-+ .+|.|.+...-...|...++.
T Consensus 478 kledahclehhfctlllpn-gdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkd 556 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPN-GDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKD 556 (666)
T ss_pred hhhHHHHHHHhhhhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHh
Confidence 22 11 122222222 12233444444 555566666544455556665444 488898888888888888888
Q ss_pred hCCC--CcChhHHHhhhhhhhcCCChhHHHHHHHHHHHHHHH-----hCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000156 159 FGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRW-----IGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (2015)
Q Consensus 159 fG~~--~i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-----lG~~~l~~~l~~~Lk~~q~keLe~~f~k~~~~~ 231 (2015)
.|.. .+-..-..++-++...|.--.+|..|...++.+|+. +|+++. +...++=+-...+..-+.|+++.|..
T Consensus 557 lgkGragfiediakkfgVpaeehglndkreaafaiicdmtrdhQarsIgedLm-pddskngriilvksefEgFAkiDgra 635 (666)
T KOG4825|consen 557 LGKGRAGFIEDIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQARSIGEDLM-PDDSKNGRIILVKSEFEGFAKIDGRA 635 (666)
T ss_pred cCCCccchhHHHHHHhCCCccccchhHHHHhHhhhhhhhcccHHHHHHHhhcC-cccccCCceEEeHHHhhhhhhccCCC
Confidence 7763 222222334555666777788999999999999864 343311 11111112223344445566666655
Q ss_pred CCC
Q 000156 232 RPT 234 (2015)
Q Consensus 232 ~P~ 234 (2015)
.|+
T Consensus 636 nda 638 (666)
T KOG4825|consen 636 NDA 638 (666)
T ss_pred ChH
Confidence 553
No 252
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=44.38 E-value=34 Score=29.03 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=28.1
Q ss_pred hCCCCcChhHHHhhhhhhhcCCChhHHHHHHHHH
Q 000156 159 FGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192 (2015)
Q Consensus 159 fG~~~i~~k~il~~l~~ll~~~d~~VR~~a~~l~ 192 (2015)
..+.++.-..+++.+..-|.|.++.||++|.+++
T Consensus 9 ~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 9 KDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4455666678999999999999999999998763
No 253
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=42.87 E-value=44 Score=36.97 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----hh----hhhHHHHHH
Q 000156 63 DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL----EA----VDVFLDVME 134 (2015)
Q Consensus 63 DsN~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~----~~----~~~v~~~L~ 134 (2015)
.....+...++-++..+++..+..+.+.+.+.+..++++. .....-.+..++..+.-+ .+ .+.+.+.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3455666677777777876666656666666666666552 222333444444444332 11 367788888
Q ss_pred HHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhHHHhhhhhhhcC-CChh-HHHHHHHHHH
Q 000156 135 KAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQN-VRASSKGLTL 193 (2015)
Q Consensus 135 ~~~~--~KnpKv~~~~l~~L~~~l~~fG~~~i~~k~il~~l~~ll~~-~d~~-VR~~a~~l~~ 193 (2015)
+... .++.++..+++.+|..+...-.....-.+..+++|..++.+ .|.. ||..|.-.++
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 8877 88999999999999876543333333467788999999964 4455 6777655543
No 254
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.68 E-value=1.3e+03 Score=33.42 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=95.8
Q ss_pred hhhHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhc
Q 000156 893 TGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAV 967 (2015)
Q Consensus 893 ~~eL~~~L~~rL----~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~-D~k~~Vr~aa~~aL~~i~~~~ 967 (2015)
++.+.+.+.... -=+|..++..|--+++.+...-. .|+..=+|.++..+. .+.+.||.-+..++..++-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 355555554433 22357777777777777664332 344555677777775 677889999999999988776
Q ss_pred C--chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000156 968 H--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (2015)
Q Consensus 968 g--l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~ 1040 (2015)
+ ++++-+.+..-|.+. ++.+|..++-.|+-.+-+-- --++-.+.-...||.|.+++||.-|...+..+.
T Consensus 993 pnlie~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndm--iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDM--IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccccchhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5 688889999999988 68999999888875543110 011222333667999999999999995555443
No 255
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.20 E-value=96 Score=43.05 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=50.4
Q ss_pred HHhhc-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 410 ~~L~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
..|.+ ..|-+|+=++..|.++.+....+.....-..--..+...|.|+-|+||.||.-||++|....
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 34444 35888888888888887777666554333444556888999999999999999999999863
No 256
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=41.11 E-value=7.9e+02 Score=30.47 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=62.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCchh-h---HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-
Q 000156 947 DNKKHMRECTLTVLDAWLAAVHLDK-M---VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM- 1021 (2015)
Q Consensus 947 D~k~~Vr~aa~~aL~~i~~~~gl~~-l---l~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L- 1021 (2015)
|+..++|-.....+-+++..+++-. + +..+-+.|++-+.+.....+++..+.+.+............+.-++..+
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt 196 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT 196 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 4444499999999999998887432 2 3355566665444556678888888888876654333333444455444
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 000156 1022 TDKSSDVRKAAEACIVEILRA 1042 (2015)
Q Consensus 1022 ~D~~~~VR~aA~~~L~~l~~~ 1042 (2015)
+|-....|+.|.+|+.....-
T Consensus 197 ~dnas~AredA~rcV~~av~d 217 (378)
T KOG2753|consen 197 EDNASEAREDAMRCVVEAVKD 217 (378)
T ss_pred ccchhHHHHHHHHHHHHHHcC
Confidence 455578888888888766543
No 257
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.04 E-value=7.6e+02 Score=30.49 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=54.8
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhc-CCCCCC----CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH--Hhhhcch
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~~-~~ki~~----~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~--~L~~~f~ 361 (2015)
.|+..+...+|.....|...|..++. .+.... +.+..++..|...+...+..+...|++|++.|.+ ..|..|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 57777888999999999999999874 333222 2344455555555554555567888899988875 4455553
Q ss_pred hhhHhHHHHHHHHh----ccCcHHHHHHHHHHHHHHH
Q 000156 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMH 394 (2015)
Q Consensus 362 ~~~~~llp~LL~kl----kdkk~~V~~aa~~aL~al~ 394 (2015)
. ...++.++..+ ..++....+-.-.++-.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 2 34444444444 2334444444444444433
No 258
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=40.78 E-value=5.8e+02 Score=30.23 Aligned_cols=118 Identities=10% Similarity=0.115 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh-cC
Q 000156 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NK 415 (2015)
Q Consensus 338 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~-~K 415 (2015)
+..+......++..++..... +...+++.|-.-+ ++....++..+.+++..++.+....+......|..-+. .+
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~ 172 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDY 172 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCcc
Confidence 333334434566666665443 7788888888888 88888999999999999997633333333333433343 45
Q ss_pred ChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHHhcCCCH
Q 000156 416 VPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTP 459 (2015)
Q Consensus 416 np~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~L~Ds~~ 459 (2015)
.|.+=...+.|+..+-... ...........++..+-+.....+.
T Consensus 173 rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 6777666677765422211 1223334446666677777766663
No 259
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=40.58 E-value=4e+02 Score=34.57 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHh-----hhcch-hhhHhHHHHHHHHhccCc---HHHHHHHHHHHHHH
Q 000156 324 TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL-----RTHFS-GSSRFLLPVLLEKLKEKK---PTVAESLTQTLQAM 393 (2015)
Q Consensus 324 ~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L-----~~~f~-~~~~~llp~LL~klkdkk---~~V~~aa~~aL~al 393 (2015)
.++++.|..+++ ...-+|++.++.++..|...- +..+. ..+..=++.+++.+.+.| +.+.+.+...-..+
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 356666666666 445568888887777777632 11121 122222345555555432 34444333222222
Q ss_pred HHh--cCCChHhHHHHH-----------------------------------HHHhh-cCChHHHHHHHHHHHHHHHhcC
Q 000156 394 HKA--GCLNLVDVVEDV-----------------------------------KTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (2015)
Q Consensus 394 ~~~--~~~~l~~il~~l-----------------------------------~~~L~-~Knp~vR~~~l~~L~~~l~~~~ 435 (2015)
-.+ .-++++....++ ..-|+ +.+|.+-.-+|.=++.++..+|
T Consensus 307 ~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P 386 (429)
T cd00256 307 KNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP 386 (429)
T ss_pred HHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc
Confidence 211 023344433333 22232 2334444444444555555554
Q ss_pred hh--HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 436 KA--AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 436 ~~--~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
.. .+.+ +. .-..++++|+++|++||..|..|+..+|-
T Consensus 387 ~gr~i~~~-lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 387 RGKDVVEQ-LG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cHHHHHHH-cC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 1211 11 23468899999999999999999998874
No 260
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=40.48 E-value=1.9e+02 Score=36.24 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=84.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHh-cCCCCC----CCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcc---
Q 000156 289 GFWEGVKATKWSERKDAVAELTKLA-STKRIA----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF--- 360 (2015)
Q Consensus 289 ~f~~~l~s~kWkeR~eaL~~L~~l~-~~~ki~----~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f--- 360 (2015)
.|++-+.......=-+|...+..+. .++.+. ..+|..++..+.+.+...|....+.+++.|++|-.. |..|
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm 246 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVM 246 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHH
Confidence 3556667788888888888888866 444433 357999999999999999999999999999998631 2222
Q ss_pred hhhh--HhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHH
Q 000156 361 SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (2015)
Q Consensus 361 ~~~~--~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l 408 (2015)
..|+ ..-+..++..++|+.++|+-.|...+..++.+ ....+.|...|
T Consensus 247 ~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~~~I~~iL 295 (335)
T PF08569_consen 247 TRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKPPPIVDIL 295 (335)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-BHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCChHHHHHH
Confidence 2453 46778888889999999999998888888887 44445555544
No 261
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=39.56 E-value=2e+03 Score=34.67 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=80.3
Q ss_pred CCCCChhhHHHHHHhccccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHh
Q 000156 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWLAA 966 (2015)
Q Consensus 888 I~~~~~~eL~~~L~~rL~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k-~~Vr~aa~~aL~~i~~~ 966 (2015)
|.+.. +.++..+...+.|....+...++.++++|+...|.....+++.+++.+.+.++|.. ..-|.++..++..+...
T Consensus 642 i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 33443 66777888888888889999999999999999999999999989999999999864 45788888999888887
Q ss_pred cCc--------hhhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000156 967 VHL--------DKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (2015)
Q Consensus 967 ~gl--------~~ll~~l~~~L~~~k~~p~~R~~~l~~L~ 998 (2015)
.|+ +.++..+...+...- ....|.+++.-+.
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~-~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQ-SSTIRREAIRLLG 759 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhh-hhHHHHHHHHHhh
Confidence 662 344444554444331 2345555555443
No 262
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.46 E-value=4.5e+02 Score=36.26 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=76.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-h
Q 000156 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-K 444 (2015)
Q Consensus 366 ~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~ 444 (2015)
.++..|++.+-.++.. .+++-++......-..++..|-..+. ++.-|..++.+|..++...+.- +-+.+ -
T Consensus 39 ~l~~~l~~y~~~t~s~------~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ------RALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPW-LYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCcH------HHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCch-HHHHhcC
Confidence 5566777766555432 22233332211112456666666555 5688999999999999877653 22222 3
Q ss_pred hHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccH
Q 000156 445 DYVPICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (2015)
Q Consensus 445 ~l~p~l~k~L-~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~ 490 (2015)
.+.+.|.+|| -|.+..|=..|.-+|..+.-++... +.+++..|=.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~~Lf~ 155 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 4667777776 6999999999999999999888864 6778776653
No 263
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=37.78 E-value=7.7e+02 Score=29.35 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=46.2
Q ss_pred hcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhh
Q 000156 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (2015)
Q Consensus 334 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~ 413 (2015)
+.|.++.|+..++.|...+- |.+|..+.. . .-...++. .+..+-..|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy---------------~~~~~~i~~--~-------~~~~~~W~----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY---------------PLVFRWICV--N-------PSDEQLWE----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH---------------HHHHHHHS-----------HHHHHHHH----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHHH---------------HHHHHHHcC--C-------chHHHHHH----HHHHHHHHHHHHhc
Confidence 56788888888888887654 333333311 1 11111111 12345566777788
Q ss_pred cCChHHHHHHHHHHHHHHHhc
Q 000156 414 NKVPLVRSLTLNWVTFCIETS 434 (2015)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~ 434 (2015)
+.|+.+|..+++|+.+++-..
T Consensus 54 ~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 264
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=37.23 E-value=4.5e+02 Score=28.65 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=67.5
Q ss_pred hHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-----H
Q 000156 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----A 438 (2015)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-----~ 438 (2015)
++.-+..+|.+|.-+++.+..++.=||+. ..--+++.+.|++.|+..+-..|...+.|+..+.+.+... .
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~-----~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN-----RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 56677788888988888888877777764 1223678999999999889999999999998866544221 1
Q ss_pred HHHhhhhHHHHHHHHhc-CCCH--HHHHHHHHHHHHHH
Q 000156 439 VLKVHKDYVPICMECLN-DGTP--EVRDAAFSVLAAIA 473 (2015)
Q Consensus 439 l~~~l~~l~p~l~k~L~-Ds~~--~VR~aA~~al~~l~ 473 (2015)
....++.-+|.++.+.- +.+. .=+..+++.|..+.
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 22334444444444442 2222 23345555554443
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=36.46 E-value=6.2e+02 Score=30.65 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=80.6
Q ss_pred HHHhccccch----HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000156 899 GLRGRLYDSN----KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 974 (2015)
Q Consensus 899 ~L~~rL~DsN----~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~ 974 (2015)
.+...+.+.+ ......++..|..+|..-|.. ...+.+..---+.+.+.+..+++.+.---+.+..... -.++-
T Consensus 115 ~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~--~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~-~~~l~ 191 (262)
T PF14225_consen 115 RLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP--NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHE-FQILT 191 (262)
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc--cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhH-HHHHH
Confidence 3334445555 133445556677777554322 3333333333456666666666654332222322222 23445
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhccCCC-CCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcC
Q 000156 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (2015)
Q Consensus 975 ~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G 1044 (2015)
.+...|.++ .+..|..++..|...++.... .+...+++.|+...++...+ ..|-+.|..++..-|
T Consensus 192 ~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 192 FLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 677778765 478999999999988887654 34557789999998876655 455556666665555
No 266
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=36.40 E-value=6e+02 Score=31.29 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=111.6
Q ss_pred CChhhhhcCCChHHHHHHHHHHHHHhhcc------CCCCch--H-HHhh---------hhhhHhhhcCCcHHHHHHHHHH
Q 000156 14 LPWEDRLLHKNWKVRNEANIDLAALCDSI------TDPKDN--R-IREL---------GPLFKKTVADSNAPVQDKALDA 75 (2015)
Q Consensus 14 lpl~erl~~k~WK~R~~ayeeL~~~~~~~------~d~~~~--~-~~~~---------~~~~~k~v~DsN~~vqe~~lea 75 (2015)
|...++..+-.-+.|..+.+|+.+.+... .++..| + ...+ ...+-+-+.|-+..+.--++.+
T Consensus 23 l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~i 102 (342)
T KOG1566|consen 23 LKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQI 102 (342)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHH
Confidence 44444444444677888888888877532 122222 1 1111 1222344556666666666666
Q ss_pred HHHHHHHhchh---hhhh---HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhhhhHHHHHHH---------HhhcC
Q 000156 76 LIAYLKAADAD---AGRY---AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK---------AIKNK 140 (2015)
Q Consensus 76 l~~~l~~~~~~---~~~~---~~~v~~~LieK~l~~k~~~k~~a~~~ll~~~E~~~~~~v~~~L~~---------~~~~K 140 (2015)
...++++.-.+ ...| -.+++..+|.- ...+.+.|..|=.|+.|.-..+.+...++. -..--
T Consensus 103 fnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~----~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p 178 (342)
T KOG1566|consen 103 FNNLLRRQVGTRSPTVEYLETNPEILDNLVKG----YENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLP 178 (342)
T ss_pred HHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh----hccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhcc
Confidence 66666653111 1122 13455555533 333789999999999998777766666542 22456
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCc-----ChhHH-HhhhhhhhcCCChhHHHHHHHHHHHHH
Q 000156 141 VAKAVVPAIDVMFQALSEFGAKII-----PPKRI-LKMLPELFDHQDQNVRASSKGLTLELC 196 (2015)
Q Consensus 141 npKv~~~~l~~L~~~l~~fG~~~i-----~~k~i-l~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2015)
|.++++.|++.+.+++..+-..+. +...+ -+.--+++.+.|=-.|-.+..+++++|
T Consensus 179 ~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 179 NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 789999999999999998743221 23334 344778999999999999999999987
No 267
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=36.11 E-value=1.1e+02 Score=31.26 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.9
Q ss_pred hHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000156 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (2015)
Q Consensus 401 l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (2015)
.+.++-.|..+|.|=++.||..++.||..+++.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3567778889999999999999999999999887654
No 268
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=35.89 E-value=2.2e+02 Score=29.67 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000156 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (2015)
Q Consensus 370 ~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (2015)
.+|+.|..++..+.....-|++..-. -..+++.+...+..-.+.-|...+=.+..++.++.......+...+.|.
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~-----a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~ 78 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASH-----AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPV 78 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 45566666777777666666654432 2467777777666555556665555555556555332111122333333
Q ss_pred H----HHHhcCCCHHHHHHHHHHHHHHHH
Q 000156 450 C----MECLNDGTPEVRDAAFSVLAAIAK 474 (2015)
Q Consensus 450 l----~k~L~Ds~~~VR~aA~~al~~l~~ 474 (2015)
+ ....+..++++|+...+.+...-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 79 FQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 3 333344446677777666654443
No 269
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=35.22 E-value=8e+02 Score=28.79 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=39.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHh
Q 000156 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (2015)
Q Consensus 455 ~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~ 501 (2015)
..=.++||++=.-++-.+..+.++..++-+...||..-|.-.++.++
T Consensus 167 ~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 167 YTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 34568999999999999999999888888888899888777766654
No 270
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.81 E-value=4.1e+02 Score=35.91 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=76.2
Q ss_pred hhHHHHHHhcccc----chHHHHHHHHHHHHHHHHHhChhh----HHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHH
Q 000156 894 GELFGGLRGRLYD----SNKNLVMATLITLGAVASAMGPAV----EKSSKGVLSDILKCL----GDNKKHMRECTLTVLD 961 (2015)
Q Consensus 894 ~eL~~~L~~rL~D----sN~~V~~~Al~~l~~La~alg~~f----~~~~~~llp~ll~~L----~D~k~~Vr~aa~~aL~ 961 (2015)
.+++..|...+.+ .+..+...|+-.++.++...-..- ......+++.+...| .+.....+..++.+|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5666666666543 356788888888888886332111 111234555554444 3344444555555555
Q ss_pred HHHHhcCchhhHHHHHHHHh-cCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHH
Q 000156 962 AWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (2015)
Q Consensus 962 ~i~~~~gl~~ll~~l~~~L~-~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L 1036 (2015)
++|....++.+...+. +...++.+|..++.-|.......+ ..+...+.+++. =.+.+.+||-+|.-.|
T Consensus 472 ----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--~~v~~~l~~i~~-n~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 ----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--RKVQEVLLPIYL-NRAEPPEVRMAAVLVL 540 (574)
T ss_pred ----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHc-CCCCChHHHHHHHHHH
Confidence 4566666666666665 433356789888888875432221 122333333331 1357789999986544
No 271
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.76 E-value=7.7e+02 Score=30.29 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhc-chh----hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000156 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSG----SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (2015)
Q Consensus 324 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~-f~~----~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~ 398 (2015)
.+++..|...+......|...||+.++.+.+....+ ... .-..++|.++..++..+-.|..++.+.+..+... .
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-p 159 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-P 159 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-H
Confidence 356667776666233347788899998888766532 111 1235789999999999999999999999988765 2
Q ss_pred CChHhHHH-----HHH-HHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHHh-cCCCHHHHHHHHHHH
Q 000156 399 LNLVDVVE-----DVK-TSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECL-NDGTPEVRDAAFSVL 469 (2015)
Q Consensus 399 ~~l~~il~-----~l~-~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~L-~Ds~~~VR~aA~~al 469 (2015)
..++.++| ++. ..|. .-|.-+|..++..+..++.-.+. ....+-+ -++..+..-| +-.+--||....+.+
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe-saneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE-SANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH-HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 33444443 221 1122 23445666677777766654332 2221111 1233333333 335567899999998
Q ss_pred HHHHHHh
Q 000156 470 AAIAKSV 476 (2015)
Q Consensus 470 ~~l~~~~ 476 (2015)
..++..-
T Consensus 239 teLaete 245 (524)
T KOG4413|consen 239 TELAETE 245 (524)
T ss_pred HHHHHHh
Confidence 8888664
No 272
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=33.96 E-value=50 Score=34.82 Aligned_cols=43 Identities=28% Similarity=0.184 Sum_probs=31.6
Q ss_pred hHHHHHHhhhchhhhhhcccCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHh
Q 000156 1640 DLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1705 (2015)
Q Consensus 1640 eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k~ 1705 (2015)
.-||+-||... |.+ ..+||+++..- -|--.-||||+|..|||-
T Consensus 9 ~eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 9 WEVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 45999999987 333 35678887762 144557999999999984
No 273
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=33.78 E-value=4.4e+02 Score=29.20 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----c--CCChHhHHHHHHHHhh-
Q 000156 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----G--CLNLVDVVEDVKTSVK- 413 (2015)
Q Consensus 341 V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~----~--~~~l~~il~~l~~~L~- 413 (2015)
++..|.-++..+-..-+..|...+..++..++..-... -.-.+..++.+++.- + -..-+.+++.+..-+.
T Consensus 21 ~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 56666666666656667777777777777666443332 222334444444432 0 0223567777877777
Q ss_pred -cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc-CCCHH-HHHHHHHHHH
Q 000156 414 -NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-DGTPE-VRDAAFSVLA 470 (2015)
Q Consensus 414 -~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~-Ds~~~-VR~aA~~al~ 470 (2015)
.++..+...+++.|...-- .+..-....+.+++.|.+.+. +.+.. ||..|.-+|.
T Consensus 98 ~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7888888888888765321 222222345788889999995 55455 7777766654
No 274
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=33.56 E-value=1.1e+03 Score=29.76 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=119.1
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhc---CCCCCC-C----Ch-HHHHHHHHHHhcccCHHHHHHHHHHHHH------HHH
Q 000156 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAP-G----DF-TEVCRTLKKLITDVNIAVAVEAIQAIGN------LAR 354 (2015)
Q Consensus 290 f~~~l~s~kWkeR~eaL~~L~~l~~---~~ki~~-~----~y-~~l~~~L~k~l~D~N~~V~~~A~~~l~~------La~ 354 (2015)
+...+..-+|..|++...-...++. +.+..+ . .. .+++..|...-.+..+.+ .+...|.. +++
T Consensus 81 Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 81 LIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESLAK 158 (335)
T ss_dssp HHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHHHH
T ss_pred HHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHHHH
Confidence 4445677889999998888777763 122211 1 12 577777777776555433 22222222 222
Q ss_pred HhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CCChHhHHHHHHHHhhcCChHHHHHHHHH
Q 000156 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (2015)
Q Consensus 355 ~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~--------~~~l~~il~~l~~~L~~Knp~vR~~~l~~ 426 (2015)
-+-. ...+-.+++-.....=.|...+..++..++... ....+.++..+...+.+.|.-+|++++.+
T Consensus 159 ~iL~------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 159 IILY------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHT------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHhC------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 1111 112223555566677778888888888766431 12356677777778889999999999999
Q ss_pred HHHHHHhc-ChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchHHHHHHHhccHHHHHHHHHHHhc
Q 000156 427 VTFCIETS-SKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (2015)
Q Consensus 427 L~~~l~~~-~~~~l~~~l--~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge~~~~~~l~~Ld~~~~kkI~e~~~~ 502 (2015)
|+.++..- ....+.+++ +.-+..++.+|.|..+.+|-.|+..+-.|..- +.++ .+...=|- .-|.++-+++.+
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K~-~~I~~iL~-~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNKP-PPIVDILI-KNREKLLRFLKD 308 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-B-HHHHHHHH-HTHHHHHHHHHT
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCCC-hHHHHHHH-HHHHHHHHHHHh
Confidence 99988543 223333443 56778899999999999999999888666543 3321 12222222 234566666654
No 275
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=1.8e+02 Score=42.44 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=61.3
Q ss_pred hCCChhHHHHHHHHHHHHHHHhCCCCCC-hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhh
Q 000156 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (2015)
Q Consensus 728 ~~KnpKv~~~~l~~L~~li~~fG~~~l~-~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L 798 (2015)
...+++.|.-++..+..++...|-..+. +..+++++.++ ++|.+..|-..+..++..+-...|..+..|+
T Consensus 1551 rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL-~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1551 RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAEL-MEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 3567899999999999999999976543 57899999999 9999999999999999999999999887664
No 276
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=32.00 E-value=3.7e+02 Score=32.25 Aligned_cols=87 Identities=11% Similarity=0.217 Sum_probs=62.6
Q ss_pred hHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhh--cCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHH
Q 000156 1259 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (2015)
Q Consensus 1259 P~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~~gl--~sKN~r~R~ecl~~l~~li~~~g~~~~~~~k~l~~i 1336 (2015)
-.|++-+++.-.-+|-.+--++.++..-. -.|+|.++| ..-|+=+|-||++.||.+ +..++++.+
T Consensus 190 ~al~~~l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL 256 (289)
T KOG0567|consen 190 NALIDGLADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVL 256 (289)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHH
Confidence 44555566665566666666665555422 245555555 567899999999999986 556788999
Q ss_pred HHhhccCChHHHHHHHHHHHHH
Q 000156 1337 ASLTAERDGEIRKAALNTLATG 1358 (2015)
Q Consensus 1337 a~~i~drd~~VR~AAl~~l~~~ 1358 (2015)
....+|-++-||..+.-+|-..
T Consensus 257 ~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999887777543
No 277
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.63 E-value=4.5e+02 Score=27.17 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=42.2
Q ss_pred HhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000156 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 470 (2015)
Q Consensus 402 ~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~ 470 (2015)
..++..+...++...|.-|...+=.+..++.++....-......+.+.+.......++.+|..-.+.+.
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456666666777667777777777777777666433221122333666666666777777766555553
No 278
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.99 E-value=3.3e+02 Score=38.34 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHhhh-cchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC----
Q 000156 325 EVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC---- 398 (2015)
Q Consensus 325 ~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~---- 398 (2015)
+++..-...+.| ...-++...|.|||.|-..... .|...-..-.-.|+..++|.-+.||.|+.-||.+++.+++
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 344444455665 4688899999999998765432 2322223344567778899999999999999999998521
Q ss_pred ----------------CChHhHHH----HHHHHhhcCChHHHHHHHHHHHHHHH
Q 000156 399 ----------------LNLVDVVE----DVKTSVKNKVPLVRSLTLNWVTFCIE 432 (2015)
Q Consensus 399 ----------------~~l~~il~----~l~~~L~~Knp~vR~~~l~~L~~~l~ 432 (2015)
+..+++++ .++..+++.+|-+|.+...+|..++-
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11222222 33444556667777776666665544
No 279
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.59 E-value=2.7e+02 Score=29.68 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh---------------hHHHHhhh
Q 000156 381 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK---------------AAVLKVHK 444 (2015)
Q Consensus 381 ~V~~aa~~aL~al~~~-~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~---------------~~l~~~l~ 444 (2015)
.|+..+..++..++.+ .....+++++++...+++ ++......+.+|..+.+.... ..+....+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 4556666666666655 123445666666666555 455555555555554433210 11223345
Q ss_pred hHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhC
Q 000156 445 DYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 445 ~l~p~l~k~L~Ds~----~~VR~aA~~al~~l~~~~G 477 (2015)
.++..+.++++... .++...+.+|+..+...++
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 66666667665544 7888888888888776433
No 280
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=30.58 E-value=56 Score=36.91 Aligned_cols=90 Identities=12% Similarity=0.234 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-----cCChhhHHHHHHHHHHHHH-HhCC-CCcChhHHHhhhhhhhcC
Q 000156 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (2015)
Q Consensus 107 ~~~k~~a~~~ll~~~E~~~~~~v~~~L~~~~~-----~KnpKv~~~~l~~L~~~l~-~fG~-~~i~~k~il~~l~~ll~~ 179 (2015)
..+|.....-+-.|++.++.+.+++.|..... ........+|+.||..+++ .+|. .++.-..++..+...+..
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 34455555666667766666666665543322 2345678899999987765 3665 344556688999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 000156 180 QDQNVRASSKGLTLELC 196 (2015)
Q Consensus 180 ~d~~VR~~a~~l~~ely 196 (2015)
.+..+|..+..++..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887653
No 281
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=30.18 E-value=7.6e+02 Score=28.24 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHHHhhccCCCCchHHHhhhhhhHhhhcCC-----cHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 000156 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-----NAPVQDKALDALIAYLKAADADAGRYAKEVCDA 97 (2015)
Q Consensus 23 k~WK~R~~ayeeL~~~~~~~~d~~~~~~~~~~~~~~k~v~Ds-----N~~vqe~~leal~~~l~~~~~~~~~~~~~v~~~ 97 (2015)
|.=+.|..|..-|...+... ++.-|.+. ..+.+.+..... |.......+..+..++. ...|...++.+
T Consensus 19 KiDrvR~~A~~~l~~ll~~~-~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-----~~~y~~~ll~G 91 (193)
T PF12612_consen 19 KIDRVREVAGKCLQRLLHSQ-DPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-----LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-----cHHHHHHHHhH
Confidence 34478999999999888432 22111111 223333333222 23334444444444432 23577779999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHH
Q 000156 98 IAAKCLTGRPKTVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSE 158 (2015)
Q Consensus 98 LieK~l~~k~~~k~~a~~~ll~~~E~-----~~~~~v~~~L~~~~~--~KnpKv~~~~l~~L~~~l~~ 158 (2015)
||--+.|.-..+...|...++.|+.- +..+.++..|..-+. .++.+++...+..+..++..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 98886555677888888888999841 224566666666654 35677777877777777665
No 282
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.61 E-value=73 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=21.5
Q ss_pred HHhhhhhhhcCCChhHHHHHHHHHHHHH
Q 000156 169 ILKMLPELFDHQDQNVRASSKGLTLELC 196 (2015)
Q Consensus 169 il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (2015)
.+|.|..++.+.|..||.+|...+..|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3677888888888888888877776653
No 283
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=29.30 E-value=2.8e+02 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.0
Q ss_pred hhhHHH-HHhhcCCCChHHHHHHHHHHHH
Q 000156 1011 AHLLKP-ASIAMTDKSSDVRKAAEACIVE 1038 (2015)
Q Consensus 1011 ~~ll~p-l~~~L~D~~~~VR~aA~~~L~~ 1038 (2015)
..+..| |..+|.-+|+.||.+|...+..
T Consensus 117 ~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 117 LRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 556777 7789999999999999877654
No 284
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.12 E-value=2.3e+02 Score=35.02 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred hhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------hHhHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000156 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431 (2015)
Q Consensus 363 ~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~-----------l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l 431 (2015)
|+..++ .+|+++ .++..+.+.+...++.++...... .......++..+.+.++.+...++..|+.++
T Consensus 56 ~~~~~l-~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 56 YASLFL-NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344344 444444 455566666666666665541101 1113344555677889999999999999988
Q ss_pred HhcChhHHH---HhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 432 ETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 432 ~~~~~~~l~---~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
...+..... ..++.++..+...+...+.++...|..||..+.+.
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 876544332 34455555555555556677888888888877643
No 285
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=29.06 E-value=1.2e+03 Score=28.89 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=38.5
Q ss_pred ccHHHHHhhhcCCChhhHH-HHHHHHHHHHHhhCCCcccccch--HHHHHHhhccCChHHHHHHHHHHHHH
Q 000156 1291 KTLPYILEGLRSKNNRTRI-ECVDLVGFLIDHHGAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATG 1358 (2015)
Q Consensus 1291 kvf~~l~~gl~sKN~r~R~-ecl~~l~~li~~~g~~~~~~~k~--l~~ia~~i~drd~~VR~AAl~~l~~~ 1358 (2015)
++|..|.+-++++|+-+-. -++.-|+++++.+.-....-.|- =..|--+++..|+.||--||.++-++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 3677777778888876321 12233444444332110000111 14566788999999999998877544
No 286
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.70 E-value=7e+02 Score=33.71 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhcc----CcHHHHHHHHHHHHHHHHhcCCCh--------HhHHHHHHHH
Q 000156 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE----KKPTVAESLTQTLQAMHKAGCLNL--------VDVVEDVKTS 411 (2015)
Q Consensus 344 ~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkd----kk~~V~~aa~~aL~al~~~~~~~l--------~~il~~l~~~ 411 (2015)
.|.+++..+...++.. -..++..+++.++. +...++..+.-++.+++...|... ..+++.+...
T Consensus 375 ea~~~~~~~~~~~~~P----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 375 EAAQLLAVLPHTARYP----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred HHHHHHHHHHHhhhcC----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 3445555554444322 23455555555543 355688888888888886545332 3444444443
Q ss_pred hh----cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhCch
Q 000156 412 VK----NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN---DGTPEVRDAAFSVLAAIAKSVGMR 479 (2015)
Q Consensus 412 L~----~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~---Ds~~~VR~aA~~al~~l~~~~Ge~ 479 (2015)
++ .++...+.-.+..|++ .+ ++..++.+.+.+. +....+|-+|..+|..+.......
T Consensus 451 l~~~~~~~~~~~~~~~LkaLGN----~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 451 LQQAVSKGDEEEIQLYLKALGN----AG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred HHHHHhcCCchheeeHHHhhhc----cC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 32 2333333333333332 22 2333444444443 445689999999998776655543
No 287
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=2.3e+03 Score=32.14 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred HhHHHHHHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 402 VDVVEDVKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 402 ~~il~~l~~-~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
..++.++.. ...+-+|.+|..++.|+...+=...--......+.|-..+...++|..-+||+.|.+||..+++.-
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 445566653 233678999999999998765332100112345778888999999999999999999999998763
No 288
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=27.82 E-value=7.2e+02 Score=32.41 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhcchhhhHhHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHHhcCC-------Ch-HhHHHHHHHHhhc
Q 000156 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKE-----KKPTVAESLTQTLQAMHKAGCL-------NL-VDVVEDVKTSVKN 414 (2015)
Q Consensus 348 ~l~~La~~L~~~f~~~~~~llp~LL~klkd-----kk~~V~~aa~~aL~al~~~~~~-------~l-~~il~~l~~~L~~ 414 (2015)
|+-.+...++....+++..+++.|...++. +|+.--.-..+++.+++++.|. .+ +.++|.+..-|++
T Consensus 49 ~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~ 128 (435)
T PF03378_consen 49 CIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ 128 (435)
T ss_dssp HHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555544422 3444555566666666665221 12 2355666666777
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.....=-++++.|+.+++.++...+.+....+.|.+ ...+++...+| -+....|.++.++-+.
T Consensus 129 dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 129 DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPS 192 (435)
T ss_dssp T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCch
Confidence 666677788999999999887444554445555544 56678877777 4555566666655544
No 289
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.58 E-value=4.3e+02 Score=30.30 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=73.3
Q ss_pred hhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---ChHhHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHh
Q 000156 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL---NLVDVVEDVKTSVK-----NKVPLVRSLTLNWVTFCIET 433 (2015)
Q Consensus 362 ~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~---~l~~il~~l~~~L~-----~Knp~vR~~~l~~L~~~l~~ 433 (2015)
.++..++..|+....||-..||..|..++..+..+... .++ -.+.+...+. +-+|..=.++...+..++.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 45778899999999999999999999999999843111 111 1223333222 1234444444444443332
Q ss_pred cChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCchHHHHHHHhc
Q 000156 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS--VGMRPLERSIEKL 488 (2015)
Q Consensus 434 ~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~--~Ge~~~~~~l~~L 488 (2015)
+..+...++..++--.+.....+..+|..+|..++.- -+...+..++..|
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l 132 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDL 132 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1233455666666667888888888888888888763 3333444444443
No 290
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.13 E-value=1.5e+03 Score=29.34 Aligned_cols=199 Identities=11% Similarity=0.047 Sum_probs=115.0
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCc
Q 000156 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (2015)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~ 678 (2015)
..++..+.|.|-++|..--.-|..+.......-. ....+++++- ....+......|+++..++..+..=.
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~-----e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY-----ETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH-----TTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-----CcccccCHHHHHHHHHHHHhccCCCC
Confidence 4567889999999999888888888776333211 1234455442 23345566778889988887543112
Q ss_pred hhHHHHHHHHHHhhhcch----hhhHHHHHHHHHHHhhhC--hhHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCC
Q 000156 679 KKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (2015)
Q Consensus 679 ~~~~~~il~~LveKlgD~----K~r~~a~~~L~~l~e~~~--~~~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~ 752 (2015)
+.....++-.++--|--+ .-...-..|+..+++..+ ...++..+++.- -.-|+.-..-.++.+..+++.+...
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence 222333333322223222 235667778888888654 345666676663 4456666667777787777654432
Q ss_pred CCC--hhhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhChhHHhhhhhccHHHHHHHHHHHhc
Q 000156 753 HLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (2015)
Q Consensus 753 ~l~--~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkp~ll~~Le~ef~k 815 (2015)
.+. ...+...+..+ +++.+-.|-+.|. |-|..+.+...+.+-...++..|-..+.+
T Consensus 290 ~f~~i~~~lf~~la~c-i~S~h~qVAErAl------~~w~n~~~~~li~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKC-ISSPHFQVAERAL------YFWNNEYFLSLISQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HTSSSHHHHHHHH------GGGGSHHHHHHHHCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHH-hCCCCHHHHHHHH------HHHCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 221 24566667775 9999998877664 44566666655555555555555555444
No 291
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.82 E-value=2e+02 Score=28.45 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=56.3
Q ss_pred hhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000156 894 GELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (2015)
Q Consensus 894 ~eL~~~L~~rL~-DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~ 962 (2015)
.+++..|...+. ..+..|+...++|+..+...-|..+..--+.++..+-....|....+...|..++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 467777777753 457889999999999999999988887778888888888888888888888877653
No 292
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.80 E-value=1.2e+03 Score=28.22 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=100.0
Q ss_pred hhhh-ccCChHHHHHHHHHHHHHhcCCCCCCC--C----hHHHHHHHHHHhcccC----HHHHHHHHHHHHHHHHHhhhc
Q 000156 291 WEGV-KATKWSERKDAVAELTKLASTKRIAPG--D----FTEVCRTLKKLITDVN----IAVAVEAIQAIGNLARGLRTH 359 (2015)
Q Consensus 291 ~~~l-~s~kWkeR~eaL~~L~~l~~~~ki~~~--~----y~~l~~~L~k~l~D~N----~~V~~~A~~~l~~La~~L~~~ 359 (2015)
++++ .+.-|..-.+-+..|..+.+.+-+.++ . +...++.+...+.+.+ ..-+...+..|..+|+.- .
T Consensus 70 ~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--~ 147 (262)
T PF14225_consen 70 LKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--G 147 (262)
T ss_pred hCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--C
Confidence 3444 345555444444444433333323333 1 2233344444555555 134455557777777432 2
Q ss_pred chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000156 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (2015)
Q Consensus 360 f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~l~~il~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (2015)
....++.+-.-.-.++++++..+++.+.-.-++++-. .-..++-.+..-+.++-+-+|..++..|..++...+-.
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~---~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-- 222 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD---HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-- 222 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--
Confidence 3344555555555677777777766553333333321 12356677788888999999999999999999876432
Q ss_pred HHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000156 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (2015)
Q Consensus 440 ~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~Ge 478 (2015)
.+.-.+++..+.+.+....-. .|.+.+..++.+-|.
T Consensus 223 ~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 SPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSGS 258 (262)
T ss_pred CCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhccc
Confidence 113356677777777654432 366666666666554
No 293
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.78 E-value=4.7e+02 Score=29.04 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHHhc-C-CCCCCC----Ch-----HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhH
Q 000156 297 TKWSERKDAVAELTKLAS-T-KRIAPG----DF-----TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (2015)
Q Consensus 297 ~kWkeR~eaL~~L~~l~~-~-~ki~~~----~y-----~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~ 365 (2015)
..+.-|.=+|+.|..++. + +.+... .+ ..+++.|.+.+...+..+...+++++..+...++..+....+
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888877663 2 222211 12 345556666666555889999999999999999999999999
Q ss_pred hHHHHHHHHhccCcH---HHHHHHHHHHHHHHHh
Q 000156 366 FLLPVLLEKLKEKKP---TVAESLTQTLQAMHKA 396 (2015)
Q Consensus 366 ~llp~LL~klkdkk~---~V~~aa~~aL~al~~~ 396 (2015)
.+++.++..+-+++. .-+..+-+++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 999999996655332 4556666777777653
No 294
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.68 E-value=3.3e+02 Score=32.70 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHH
Q 000156 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017 (2015)
Q Consensus 938 lp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl 1017 (2015)
+-.+...|++..+..|..+.-+++.+-..+. +|.+.+.|.+.+-+|.+|.+++..|.-.- -.+.+..|
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~a----i~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~~~~vL 256 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPAA----IPSLIKVLLDETEHPMVRHEAAEALGAIA--------DEDCVEVL 256 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchhh----hHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHHHHHHH
Confidence 4556667777777788887777776655443 56667777655447899999887775321 13455557
Q ss_pred HhhcCCCChHHHHHHHHHHHHH
Q 000156 1018 SIAMTDKSSDVRKAAEACIVEI 1039 (2015)
Q Consensus 1018 ~~~L~D~~~~VR~aA~~~L~~l 1039 (2015)
...++|...-||+.+.-+|..+
T Consensus 257 ~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 7788999999999988887654
No 295
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=1.3e+03 Score=28.87 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHhcccCHH----HHHHHHHHHHHHHHHhhhc------chhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC
Q 000156 330 LKKLITDVNIA----VAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (2015)
Q Consensus 330 L~k~l~D~N~~----V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~ 399 (2015)
|..++.|+|-. .+..+|.+|..|| |.+ .+...-..+-.++.++.+ .+.|.+.+..++..++-....
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralA---G~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALA---GSDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHh---CCCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhcCcc
Confidence 33455554433 4444455555554 322 122222334445555554 467788888888887754222
Q ss_pred ChHhHHH-----HHHHHhh-c-CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000156 400 NLVDVVE-----DVKTSVK-N-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (2015)
Q Consensus 400 ~l~~il~-----~l~~~L~-~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l 472 (2015)
+-..+++ ....+|+ | +..++...++..+..++.+.... -...+..=+..|...-.-.++.+|++|..+|--+
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-RTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-cchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2233333 3457777 3 55788899998888877654321 1112233334455555567889999999988544
No 296
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=1.9e+03 Score=30.29 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=60.2
Q ss_pred hhhcCCChhhHHHHHHHH-------HHHHHhhCCCcccccchHHHHHHhhccCChHHHHHHHHHHHHHHHHhCh----HH
Q 000156 1298 EGLRSKNNRTRIECVDLV-------GFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE----DI 1366 (2015)
Q Consensus 1298 ~gl~sKN~r~R~ecl~~l-------~~li~~~g~~~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~----~v 1366 (2015)
..|.+|++-.+ ||++-| -.++.+||..+-+....+..|+.++.+.|++.=.-=...+.++|-=+.. .|
T Consensus 550 ~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~i 628 (667)
T KOG2286|consen 550 RALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAI 628 (667)
T ss_pred HHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHH
Confidence 34444444455 776544 4567778875544455679999999999988555555555555544443 35
Q ss_pred HHHhhcCCHHHHHhHHHHHHhhhh
Q 000156 1367 WRYVGKLTDAQKSMLDDRFKWKVR 1390 (2015)
Q Consensus 1367 ~~~vg~Ls~~~~s~l~er~kr~~~ 1390 (2015)
.+.=|++|.+++.-+-++++..-.
T Consensus 629 l~~R~dls~~~~k~i~~~~~~~~~ 652 (667)
T KOG2286|consen 629 LKIRGDLSRSEKKKIVDILKESMG 652 (667)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHh
Confidence 566678998888888888876533
No 297
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=25.49 E-value=3e+02 Score=29.12 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=61.3
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhcc---ccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000156 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (2015)
Q Consensus 860 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~~L~~rL---~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~ 936 (2015)
+..++++|-.-..-|.+|.... ..+..+..++..|.+|| ...++.++..||.+|..|...-...|...++.
T Consensus 10 eAT~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~ 83 (125)
T PF01417_consen 10 EATSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD 83 (125)
T ss_dssp HHTSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4456667766555555554332 22244789999999999 77899999999999999998888777665543
Q ss_pred HHHHHH--HHh--CCC-----cHHHHHHHHHHHHHH
Q 000156 937 VLSDIL--KCL--GDN-----KKHMRECTLTVLDAW 963 (2015)
Q Consensus 937 llp~ll--~~L--~D~-----k~~Vr~aa~~aL~~i 963 (2015)
-+..|- ..+ .|. ...||..|...++-+
T Consensus 84 ~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 84 HIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp THHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 333221 122 121 134888876666543
No 298
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.35 E-value=5.3e+02 Score=32.25 Aligned_cols=144 Identities=13% Similarity=0.201 Sum_probs=84.2
Q ss_pred hhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh----H---HHHHHHHHHhhc--CCC--------hhHHHHHHHH
Q 000156 54 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY----A---KEVCDAIAAKCL--TGR--------PKTVEKAQAV 116 (2015)
Q Consensus 54 ~~~~~k~v~DsN~~vqe~~leal~~~l~~~~~~~~~~----~---~~v~~~LieK~l--~~k--------~~~k~~a~~~ 116 (2015)
...+-+.++.+....+..+|..|.+.+...+...++. + -..++.+...-- +.+ +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 3445567777778888888888888888443322221 1 123444432111 111 2889999999
Q ss_pred HHHHHhhhhhh---------hHHHHHHHHhhcCChhhHHHHHHHHHH-HHHHhCCCC-cCh----hHHHhhhhhhhcCCC
Q 000156 117 FMLWVELEAVD---------VFLDVMEKAIKNKVAKAVVPAIDVMFQ-ALSEFGAKI-IPP----KRILKMLPELFDHQD 181 (2015)
Q Consensus 117 ll~~~E~~~~~---------~v~~~L~~~~~~KnpKv~~~~l~~L~~-~l~~fG~~~-i~~----k~il~~l~~ll~~~d 181 (2015)
++.+++...+. .++..+.+++..-.+.++...+.+|.+ ++.+=+.+- ... ...+..|..+++..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 99999875432 335666778888888999999999976 555432211 000 124455555555555
Q ss_pred h----hHHHHHHHHHHHHHH
Q 000156 182 Q----NVRASSKGLTLELCR 197 (2015)
Q Consensus 182 ~----~VR~~a~~l~~ely~ 197 (2015)
+ .|++.+..++..+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred CcccchHHHHHHHHHHHHhc
Confidence 5 555555555444443
No 299
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=5.8e+02 Score=35.93 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=49.9
Q ss_pred hhcCChHHHHHHHHHHHHHHHhcChhHHHHhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhCchHHHHHHHh
Q 000156 412 VKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIEK 487 (2015)
Q Consensus 412 L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l--~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~--~~~Ge~~~~~~l~~ 487 (2015)
|-|..|..|+.++..|..+-.+ ++ .....+ -.++-.+--.++...+.+|.+|.+.|+.+. +..|.+..-.++.=
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~-~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSN-GQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcC-cH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 3488899999999998875432 21 111111 112333334456778999999999999885 55777653334444
Q ss_pred ccHHHHHHH
Q 000156 488 LDDVRRNKL 496 (2015)
Q Consensus 488 Ld~~~~kkI 496 (2015)
|.+.-...+
T Consensus 1899 LP~~f~d~~ 1907 (2235)
T KOG1789|consen 1899 LPEIFADSL 1907 (2235)
T ss_pred chHHHHHHH
Confidence 444333333
No 300
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=24.83 E-value=1.1e+03 Score=30.03 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000156 321 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~al~~~~~~~ 400 (2015)
.+|..|+.+.+.-.+ --+.|.+.|.... +.|-..+..-+-+-++.+-|-...||..|..-|--++.- ..
T Consensus 25 ~~y~~il~~~k~~~k-----~k~lasq~ip~~f----k~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~ 93 (460)
T KOG2213|consen 25 DDYEGILKAVKGTSK-----EKRLASQFIPRFF----KHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA 93 (460)
T ss_pred HHHHHHHHHhhcchH-----HHHHHHHHHHHHH----hhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--ch
Confidence 467777666655333 2344555555444 344455666666677777777777777666555555432 23
Q ss_pred hHhHHHHHHHHhh------------cCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHHhcCCCHH
Q 000156 401 LVDVVEDVKTSVK------------NKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPE 460 (2015)
Q Consensus 401 l~~il~~l~~~L~------------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~L~Ds~~~ 460 (2015)
+..+.+.+...|+ -..-++|+-++.||..-+-......+.+-+ ..++..+.+.|+|-..+
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge 166 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE 166 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence 3333333322221 124578888888887665554444433222 34566677777776665
No 301
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=24.82 E-value=9.5e+02 Score=26.49 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=59.3
Q ss_pred HHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHH-HHHHHHHHHHhhcCcchHHHHHHHh-hHHHHHHHHHhcCCCCCH
Q 000156 1174 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVLE-FLPELFDTLRDEGYSLTE 1251 (2015)
Q Consensus 1174 ~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~-lDlllk~~~lr~~dtN~~vl~k~Le-~l~~l~~~l~~~~y~l~~ 1251 (2015)
.++..+|+-+-.-.-+....|...+......++.+ .|++++ -|...+........+ .|+.++..-....|..+-
T Consensus 18 ~fls~l~~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~----aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~ 93 (152)
T PF12422_consen 18 KFLSFLFSLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFR----AWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLH 93 (152)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhH
Confidence 46667766333334444455555554444544443 444443 356654444444444 355555544443333333
Q ss_pred HHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhcCCChhhHHHHHHHHHH
Q 000156 1252 SEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1317 (2015)
Q Consensus 1252 ~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~~gl~sKN~r~R~ecl~~l~~ 1317 (2015)
.-...+|-++..+- .+..|.+++-.+. =|+|-.+|+..|+++|.-++..+..
T Consensus 94 ~~~R~~L~~f~~~k------~~~~v~~mL~rl~--------~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 94 SKFREVLLSFHSQK------KRKGVDEMLLRLY--------EPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHhcc------cccchHHHHHHHH--------HHHHHHHHcCCCcchhccHHHHHHH
Confidence 32333333333321 2223333331111 1344457788888887766655443
No 302
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=24.74 E-value=65 Score=41.44 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHHHhCCCC-----CChhhHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 000156 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (2015)
Q Consensus 719 l~~L~~~l~~~KnpKv~~~~l~~L~~li~~fG~~~-----l~~k~li~~l~~~gL~~sn~~VR~aA~~ll~~Ly 787 (2015)
+..|...+..+.+|.+.+-+|+=|.+.++.+.... +..|. .+-.+ +.|.|++||..|..++..|-
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~---~vM~L-m~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQ---RVMRL-LNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHH---HHHHH-hcCCCHHHHHHHHHHHHHHH
Confidence 34444444446678888888888888888774321 11222 24456 89999999999999998773
No 303
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=24.69 E-value=1.2e+03 Score=27.62 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=46.7
Q ss_pred hHHHHHHhccccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC--------cHH----HHHHHHHHH
Q 000156 895 ELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--------KKH----MRECTLTVL 960 (2015)
Q Consensus 895 eL~~~L~~rL~Ds--N~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~--------k~~----Vr~aa~~aL 960 (2015)
.++..|...+.+. ...+....++++..|++.- + +|+..+++.++..-.+. ... |+......|
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R-P---~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR-P---QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS-G---GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 4666666666554 4677778888888887553 3 34556677776544332 333 444444444
Q ss_pred HHHHHhcCchhhHHHHHHHHh
Q 000156 961 DAWLAAVHLDKMVPYVTTALT 981 (2015)
Q Consensus 961 ~~i~~~~gl~~ll~~l~~~L~ 981 (2015)
..+.++-...++-+.|..+|.
T Consensus 190 ~~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 190 LHLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp HHHHTSGGGGGGHHHHHHHHH
T ss_pred HHHHCCCCchhhHHHHHHHHH
Confidence 444444344466667777776
No 304
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.19 E-value=1.7e+03 Score=29.18 Aligned_cols=161 Identities=11% Similarity=0.105 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcc-ccCCCCChhh--HHHHHHhccccchHHHHHHHHHHHHHHH-HHhChhh-----HHhhhHHHHHH
Q 000156 871 LESIEAVNKILEEAN-KRIQPAGTGE--LFGGLRGRLYDSNKNLVMATLITLGAVA-SAMGPAV-----EKSSKGVLSDI 941 (2015)
Q Consensus 871 ~eale~L~~ll~~a~-~~I~~~~~~e--L~~~L~~rL~DsN~~V~~~Al~~l~~La-~alg~~f-----~~~~~~llp~l 941 (2015)
..|+.-++.++-+.. .++..-.+.. ++..|...++-.+..|....+..+..+. ...++.+ ...+ .++..+
T Consensus 274 RGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~-~i~~~~ 352 (464)
T PF11864_consen 274 RGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIIL-DIIEEI 352 (464)
T ss_pred hhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHH-HHHHHH
Confidence 367888888876532 2222212455 8899998887777777777777777777 5555542 2222 222223
Q ss_pred HHHhC---CCc------HHHHHHHHHHHHH---HHHhcC----chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc-C
Q 000156 942 LKCLG---DNK------KHMRECTLTVLDA---WLAAVH----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-L 1004 (2015)
Q Consensus 942 l~~L~---D~k------~~Vr~aa~~aL~~---i~~~~g----l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~-~ 1004 (2015)
+..+. ... ..+.......+.. +.+.-. .+.++..+......- ++..-.-++ + . .... .
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~l--p~s~~~~vl-~-~-~~~~~~ 427 (464)
T PF11864_consen 353 FDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYL--PDSSALLVL-F-Y-EERSCS 427 (464)
T ss_pred HhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccC--CHHHHHHHH-H-H-HhcccC
Confidence 33332 111 2333333333333 222211 123333333332211 122222222 1 1 1111 2
Q ss_pred CCCCChhhhHHHHHhhc--CCCChHHHHHHHHHHH
Q 000156 1005 SGFPDAAHLLKPASIAM--TDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L--~D~~~~VR~aA~~~L~ 1037 (2015)
+..+++.+.+.-++.++ .+++.+||..|-+.+.
T Consensus 428 Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~ 462 (464)
T PF11864_consen 428 PSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLE 462 (464)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 23456666666666654 6888999998877664
No 305
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.00 E-value=1.1e+03 Score=30.34 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=89.4
Q ss_pred HHHHHhcCcC-hhhHHHHHHHHHHHHHHhhcCcch-----H--HHHHHHhhHHHHHHHHHhcCCCCCHHHHHhhhhHHHH
Q 000156 1192 EMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNT-----T--CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263 (2015)
Q Consensus 1192 ~~L~~~l~~~-~~~~i~~lDlllk~~~lr~~dtN~-----~--vl~k~Le~l~~l~~~l~~~~y~l~~~Ea~~~lP~L~~ 1263 (2015)
..|.+.+.+. .+.++..+=.+|+= +.|+++ + ....++.=+...+..|.+.. ++|.+...=+-+|-+
T Consensus 244 ~~L~~Ivk~~~KEKV~Rivlai~~N----ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk--ysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 244 QDLSDIVKESTKEKVTRIVLAIFRN----LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK--YSDEDLVDDIEFLTE 317 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 3344444433 34455533333333 466663 1 12233333334455666665 678888888889988
Q ss_pred hhcCChHHH--H-HHHHHHHHHHhhccCcc------------------ccHHHHHhhhcCCC-hhhHHHHHHHHHHHHHh
Q 000156 1264 KSGHNIEKV--R-EKMRELTKQIVNFYSAT------------------KTLPYILEGLRSKN-NRTRIECVDLVGFLIDH 1321 (2015)
Q Consensus 1264 K~Gd~k~~v--r-~~v~~il~~i~~vy~~s------------------kvf~~l~~gl~sKN-~r~R~ecl~~l~~li~~ 1321 (2015)
+++++-... . +=..++.-..-.--|+- .++..|..-|+++| |..=.-+.--||..|+.
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~ 397 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH 397 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence 887631110 0 01111111111111221 37777777888888 66655555667888888
Q ss_pred hCCC--cccccchHHHHHHhhccCChHHHHHHHHHHHHH
Q 000156 1322 HGAE--ISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (2015)
Q Consensus 1322 ~g~~--~~~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~ 1358 (2015)
|.-. +-....+=..|=.+++..|++||--||.|+-.+
T Consensus 398 yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 398 YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 7432 222222336677899999999999999887543
No 306
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.87 E-value=2.2e+03 Score=30.31 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=70.9
Q ss_pred cHHHHhhhccCC-----HHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCccc--HHHHHHHHHHHHHHHHHHcC
Q 000156 603 PADTVGQLKSAV-----WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEK--NVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 603 ~~~l~~~L~s~~-----Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~Ds--N~qV~~~~Le~l~~l~~~~~ 675 (2015)
-..+-+.+.+.+ |..=.+.+-.++++.+..+..+ ...+.+.|...+..+-+ |.+....+.+.+..+...++
T Consensus 464 ~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~ 541 (982)
T KOG2022|consen 464 IDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLG 541 (982)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHh
Confidence 344445556666 7766666666666666544332 23455555444444444 88888888888887776554
Q ss_pred CCchhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHhhhC
Q 000156 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714 (2015)
Q Consensus 676 ~~~~~~~~~il~~LveKlgD~K~r~~a~~~L~~l~e~~~ 714 (2015)
+.. ..+...+|.|+.-++.+|....+...|..+|+-+.
T Consensus 542 e~P-~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 542 EHP-MYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCP 579 (982)
T ss_pred cCC-cccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhh
Confidence 422 34667788899888888888888888888887553
No 307
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=23.68 E-value=1.6e+03 Score=28.58 Aligned_cols=184 Identities=16% Similarity=0.104 Sum_probs=98.2
Q ss_pred hccCChHHHHHHHHHHHH-Hhc--CCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhh--cchhhhHhHH
Q 000156 294 VKATKWSERKDAVAELTK-LAS--TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--HFSGSSRFLL 368 (2015)
Q Consensus 294 l~s~kWkeR~eaL~~L~~-l~~--~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--~f~~~~~~ll 368 (2015)
..++.=++|.++|+.+.- +++ -|++...+..++...+.+.++...+--...|...++.++--++. .-+-......
T Consensus 69 ~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 69 VKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccc
Confidence 356888999999999865 332 35555667889999999999855555555555666766665552 2223344444
Q ss_pred HHHHHHhccCc--HHHHHHHHHHHHHHHH-h-cCC-ChHhHHHHH---H--HHhhc--CChHHHHHHHHHHHHHHH----
Q 000156 369 PVLLEKLKEKK--PTVAESLTQTLQAMHK-A-GCL-NLVDVVEDV---K--TSVKN--KVPLVRSLTLNWVTFCIE---- 432 (2015)
Q Consensus 369 p~LL~klkdkk--~~V~~aa~~aL~al~~-~-~~~-~l~~il~~l---~--~~L~~--Knp~vR~~~l~~L~~~l~---- 432 (2015)
|.+...+-+.. ...+..+..|+...+- . ++. -+..++..+ . ..+.. ..+.+-......+..|+.
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 228 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSL 228 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHH
Confidence 44444444433 3334444444443221 1 110 011111111 1 11111 111111122222222222
Q ss_pred ---hcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000156 433 ---TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (2015)
Q Consensus 433 ---~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~G 477 (2015)
-++.+........+.|-+..+|.--..++|.++.+++..+..+.-
T Consensus 229 ~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q 276 (427)
T KOG2842|consen 229 LLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQ 276 (427)
T ss_pred HHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHh
Confidence 222222222234467888899988889999999999998887753
No 308
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=23.53 E-value=86 Score=32.69 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhHHHHHHhhhchhhhhhcccCChhHHHHHHHHHHHhhChHHHhhccCCCCCChhHHHHHHHHHHHhhh
Q 000156 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1707 (2015)
Q Consensus 1639 ~eLv~KClwk~~k~l~~~~~~~~~~~il~~ih~fl~~~p~~~~~~r~~~~d~plRtvKtil~~l~k~~g 1707 (2015)
..-||+|||+... +. ..+||+-|..- -+...-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 4579999999864 21 23555555431 23466899999999998 44
No 309
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=1.3e+03 Score=34.09 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=95.4
Q ss_pred CChHHHHHHHHHHh---cccCHHHHHHHH-HHHHHHHHH-hhh---c--------------------chhhhHhHHHHHH
Q 000156 321 GDFTEVCRTLKKLI---TDVNIAVAVEAI-QAIGNLARG-LRT---H--------------------FSGSSRFLLPVLL 372 (2015)
Q Consensus 321 ~~y~~l~~~L~k~l---~D~N~~V~~~A~-~~l~~La~~-L~~---~--------------------f~~~~~~llp~LL 372 (2015)
+.|..+++++.... .|.|+.....++ =.++...+. |+. + .+..+-.++..|.
T Consensus 924 sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~ 1003 (1610)
T KOG1848|consen 924 SCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLA 1003 (1610)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHH
Confidence 45677777776544 388866544442 233333322 321 1 1334567788889
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhc--CCC---hHhHH-HHHHHHhh---c---CChHHHHH----------HHHHHHHH
Q 000156 373 EKLKEKKPTVAESLTQTLQAMHKAG--CLN---LVDVV-EDVKTSVK---N---KVPLVRSL----------TLNWVTFC 430 (2015)
Q Consensus 373 ~klkdkk~~V~~aa~~aL~al~~~~--~~~---l~~il-~~l~~~L~---~---Knp~vR~~----------~l~~L~~~ 430 (2015)
+.+-|....||..|.+++-.++... |.+ .+.++ ..|..-|. + +.|+.++- ++.-++++
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999998888551 222 23333 22222222 2 22444332 44555566
Q ss_pred HHhcChh-----HHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000156 431 IETSSKA-----AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (2015)
Q Consensus 431 l~~~~~~-----~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~ 475 (2015)
+..+-+. .+.+....+...+.+...|.++++.-+|..++-++..-
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 6544322 23355678888899999999999999999999887643
No 310
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=1.8e+02 Score=33.56 Aligned_cols=91 Identities=22% Similarity=0.298 Sum_probs=70.3
Q ss_pred hhhhhhhccCChHHHHHHHHHHHHHh--cCCCCCCCChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---hhhcchh
Q 000156 288 SGFWEGVKATKWSERKDAVAELTKLA--STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSG 362 (2015)
Q Consensus 288 ~~f~~~l~s~kWkeR~eaL~~L~~l~--~~~ki~~~~y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~---L~~~f~~ 362 (2015)
+-|.+.+.+.+.-.|.=|-+.+..|+ .+.++.+- +..|+.-|+..+.-.|..|...++++|..|... .|...-|
T Consensus 117 p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpV-LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 117 PLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPV-LPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccc-cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 36889999988888888888787755 35555553 678999999999988888888899999888763 4677789
Q ss_pred hhHhHHHHHHHHhccCcH
Q 000156 363 SSRFLLPVLLEKLKEKKP 380 (2015)
Q Consensus 363 ~~~~llp~LL~klkdkk~ 380 (2015)
|-++++|. +..+|.++-
T Consensus 196 fYRQlLp~-~n~~k~~n~ 212 (262)
T KOG3961|consen 196 FYRQLLPV-LNTFKNSNV 212 (262)
T ss_pred HHHHhhhh-hhhhccccc
Confidence 99999975 456776643
No 311
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.64 E-value=2.4e+02 Score=37.10 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhc-CCCChHHHHHHHHHH
Q 000156 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACI 1036 (2015)
Q Consensus 958 ~aL~~i~~~~gl~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~~VR~aA~~~L 1036 (2015)
..++.++++++...+++.+...+..++ ++.+.+++.||.+ ..++.-++..| .+.++++..+|..+|
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs~d~--~~~~~~ilewL~~-----------q~LI~~Li~~L~p~~~~~~q~naa~~L 87 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLISTDK--PESPTGILEWLAE-----------QNLIPRLIDLLSPSYSSDVQSNAADFL 87 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHccCc--ccchHHHHHHHHH-----------hCHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467888999999999999998888553 6789999999985 44566677777 466777788887777
Q ss_pred HHHHH
Q 000156 1037 VEILR 1041 (2015)
Q Consensus 1037 ~~l~~ 1041 (2015)
-+++.
T Consensus 88 ~aII~ 92 (475)
T PF04499_consen 88 KAIIR 92 (475)
T ss_pred HHHHH
Confidence 66544
No 312
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=21.17 E-value=1.2e+03 Score=31.37 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.9
Q ss_pred cccchHHHHHHhhccCChHHHHHHHHHHHHHHHHhC
Q 000156 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1363 (2015)
Q Consensus 1328 ~~~k~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G 1363 (2015)
|..+.+..+...+.+.|.++|..|-.++...|.-..
T Consensus 141 Ge~~~l~~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~ 176 (549)
T TIGR02289 141 GEEKTLSQLKPYLQDPNRSTRKKAWYARSEFFAVVE 176 (549)
T ss_pred CEeccHHHhhHHhhCCCHHHHHHHHHHHHHHHhcCc
Confidence 555678889999999999999999999988776543
No 313
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.16 E-value=4.3e+02 Score=27.67 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=36.9
Q ss_pred hHhHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000156 401 LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (2015)
Q Consensus 401 l~~il~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L~Ds~~~VR~aA~~al~~l~~~~ 476 (2015)
+..++|.+..+++ .+++..|.++.-.+..+..+.+-+ .+.++.++..+.+....... ...+.-|+..+++.-
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3456666666666 566666666666666554443311 12234445555554444443 333555555554433
No 314
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=21.09 E-value=3.7e+03 Score=31.93 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCCCC
Q 000156 913 MATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLG 986 (2015)
Q Consensus 913 ~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~~~g--l----~~ll~~l~~~L~~~k~~ 986 (2015)
.....-+..+..+...-..+|+..++-.++..+.|....+-.++..++..++...| + +.+++.+.+.+.+.. +
T Consensus 625 ~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s-~ 703 (2341)
T KOG0891|consen 625 EESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS-S 703 (2341)
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhh-h
Confidence 33334444444444445668888888889999999999999999999999999988 4 667777778777542 3
Q ss_pred hhHHHHHHHHHHHHhccCCC----CCChhhhHHHHHhh-cCCCChHHHHHHHHHHH
Q 000156 987 AEGRKDLFDWLSKQLTGLSG----FPDAAHLLKPASIA-MTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 987 p~~R~~~l~~L~~~l~~~~~----~~~~~~ll~pl~~~-L~D~~~~VR~aA~~~L~ 1037 (2015)
+.-|...+..+....+..+- ..+...++..++.- ...-...+|-++...++
T Consensus 704 ~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 704 LGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLG 759 (2341)
T ss_pred hhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhh
Confidence 55556666666554443221 12334455554432 24445566777766655
No 315
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.95 E-value=1e+03 Score=31.81 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=87.8
Q ss_pred hccCcHHHHhhhccCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-hcCCCC--cccHHHHHHHHHHHHHHHHHHcC
Q 000156 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGW--SEKNVQVQQQVIEVINYLAATAT 675 (2015)
Q Consensus 599 ~~ll~~~l~~~L~s~~Wk~Rl~a~e~L~~~v~~~~~~~~~~~~Lv~~L-~~~pg~--~DsN~qV~~~~Le~l~~l~~~~~ 675 (2015)
.+++..-++.+..+.+-..|..++..|..++...++ .++..+ .+.-|| .|.|.+|...+..++..+..+-+
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~------yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p 346 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD------YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIP 346 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchH------HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCC
Confidence 344555567888899999999999999998876432 222211 112254 79999999999999999988644
Q ss_pred C--CchhHHHHHHHHHHhhh-cch-hhhHHHHHHHHHHHhhhChh-----HHHHHHHHHhhhCCChhHHHHHHHHHHHHH
Q 000156 676 K--FPKKCVVLCLLGISERV-ADI-KTRAHAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (2015)
Q Consensus 676 ~--~~~~~~~~il~~LveKl-gD~-K~r~~a~~~L~~l~e~~~~~-----~Vl~~L~~~l~~~KnpKv~~~~l~~L~~li 746 (2015)
. +..+.+...-..++|-+ .|. -+|..+.+.|..+.+...++ .|...++.. .-.+-+++.+++..++++.
T Consensus 347 ~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi--~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 347 HTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDI--IPDSRENIVESVESICKID 424 (740)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHH
Confidence 2 22344444555555532 232 36878888777776643221 122222222 1223447888888888776
Q ss_pred HH
Q 000156 747 ED 748 (2015)
Q Consensus 747 ~~ 748 (2015)
.+
T Consensus 425 ae 426 (740)
T COG5537 425 AE 426 (740)
T ss_pred HH
Confidence 54
No 316
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.59 E-value=2.5e+03 Score=29.65 Aligned_cols=575 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHh--ccccch-------HHHHHHHHHhcCCCCcccH-HHHHHHHHHHHHHHHHHcCCCchhHHH
Q 000156 614 VWKERLEAISSLRQQVEA--VQNLDQ-------SVEILVRLVCMLPGWSEKN-VQVQQQVIEVINYLAATATKFPKKCVV 683 (2015)
Q Consensus 614 ~Wk~Rl~a~e~L~~~v~~--~~~~~~-------~~~~Lv~~L~~~pg~~DsN-~qV~~~~Le~l~~l~~~~~~~~~~~~~ 683 (2015)
+-..|.+|.--+.+.++. ....+. .-+.+-..+. .+..++ +.++...-+++..+... +|.++| .
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv---~lMl~s~~~iQ~qlseal~~Ig~~--DFP~kW-p 125 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIV---TLMLSSPFNIQKQLSEALSLIGKR--DFPDKW-P 125 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHhcc--ccchhh-H
Q ss_pred HHHHHHHhhh--cchhhhHHHHHHHHHHHhhhChhH----------------------HHHHHHHHhhhCCChhH----H
Q 000156 684 LCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGF----------------------IFERLYKIMKDHKNPKV----L 735 (2015)
Q Consensus 684 ~il~~LveKl--gD~K~r~~a~~~L~~l~e~~~~~~----------------------Vl~~L~~~l~~~KnpKv----~ 735 (2015)
.++|.|+.++ ||-.+-.....+-..+..++.+++ ++...+.....+.|-.- .
T Consensus 126 tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~l 205 (960)
T KOG1992|consen 126 TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNIL 205 (960)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHH
Q ss_pred HHHHHHHHHHHHHhCCCCC------ChhhHHHHHHhcCCCCCchh-------------HHHHHHHHHHHHHHHhChhHHh
Q 000156 736 SEGILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQSSAAA-------------TRNATIKLLGALHKFVGPDIKG 796 (2015)
Q Consensus 736 ~~~l~~L~~li~~fG~~~l------~~k~li~~l~~~gL~~sn~~-------------VR~aA~~ll~~Ly~~~G~~l~~ 796 (2015)
.+.+..++++...+.++.+ +.+..+....++ |..+||. +|..--+.+.---....+.+.+
T Consensus 206 f~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~-l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~ 284 (960)
T KOG1992|consen 206 FGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKL-LTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQP 284 (960)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHH-HhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHh
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCC-ChHHHHHHHH
Q 000156 797 FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIE 875 (2015)
Q Consensus 797 ~L~~lkp~ll~~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~-~Wk~R~eale 875 (2015)
|+.+.-.+.+..+.. ...-++-|....=.=.|+...... .+..=.++=.
T Consensus 285 fl~~fv~~~W~LL~~------------------------------~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~ 334 (960)
T KOG1992|consen 285 FLPDFVTATWNLLVS------------------------------TSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGEN 334 (960)
T ss_pred hHHHHHHHHHHHHHh------------------------------cCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchH
Q ss_pred HHHHHHHhccccCCCCC---------hhh-HHHHHHhccccchHH-HHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000156 876 AVNKILEEANKRIQPAG---------TGE-LFGGLRGRLYDSNKN-LVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (2015)
Q Consensus 876 ~L~~ll~~a~~~I~~~~---------~~e-L~~~L~~rL~DsN~~-V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~ 944 (2015)
-+..|++ +-+-|+. |.+ -....+.-|.-++.. -+..||..+..|++.............+..++..
T Consensus 335 vl~~i~e---~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~ 411 (960)
T KOG1992|consen 335 VLAQICE---KVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQ 411 (960)
T ss_pred HHHHHHH---hhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q ss_pred hCCCcHH---HHHHHHHHHHHHHHhcC---------------chhhHHHHHHHHhcCCCC--hhHHHHHHHHHHHHhccC
Q 000156 945 LGDNKKH---MRECTLTVLDAWLAAVH---------------LDKMVPYVTTALTDAKLG--AEGRKDLFDWLSKQLTGL 1004 (2015)
Q Consensus 945 L~D~k~~---Vr~aa~~aL~~i~~~~g---------------l~~ll~~l~~~L~~~k~~--p~~R~~~l~~L~~~l~~~ 1004 (2015)
+..+-.. -.+.++--+.+|+-..+ .+-+...+.+-|.+++.+ |-+|.+.++++. .+.+.
T Consensus 412 y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~-~FR~q 490 (960)
T KOG1992|consen 412 YSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY-TFRNQ 490 (960)
T ss_pred hccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee-eeccc
Q ss_pred CCCCChhhhHHHHHhhcCCCChHHHHHHHHHHHHHHHHcCh-hHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCC
Q 000156 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ-ETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083 (2015)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~~l~~~~G~-~~~~~~l~~L~~~~~~~i~~~l~k~~~~~~~~~~~~~~ 1083 (2015)
..+..+..+++-++..|+-...-|-..|+.|+..+...-+. .+..-.-..+.|.....+....+...-
T Consensus 491 l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~----------- 559 (960)
T KOG1992|consen 491 LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL----------- 559 (960)
T ss_pred CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccchhhhhhhhhcccCCCChHHHhhhhhccccccCCChhHHHHH
Q 000156 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL 1163 (2015)
Q Consensus 1084 ~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~p~~e~ve~L 1163 (2015)
|...+-|.|
T Consensus 560 -----------------------------------------------------------------------p~~~Eneyl 568 (960)
T KOG1992|consen 560 -----------------------------------------------------------------------PGKAENEYL 568 (960)
T ss_pred -----------------------------------------------------------------------CcccccHHH
Q ss_pred HHHHHhhhhHHHHHhhcccCHHHHHHHHHHHHHhcCcChhhHHHHHHHHHHHHHHhhcC-----cchHHHHHHHhhHHHH
Q 000156 1164 ENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLLKVLEFLPEL 1238 (2015)
Q Consensus 1164 ~~q~~~~~~~~l~~~lf~~D~k~~~~al~~L~~~l~~~~~~~i~~lDlllk~~~lr~~d-----tN~~vl~k~Le~l~~l 1238 (2015)
+..+...+.-.++++++..+.++..++--.-. +||+-..-.+|.+..+
T Consensus 569 ---------------------------mKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~l 621 (960)
T KOG1992|consen 569 ---------------------------MKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLL 621 (960)
T ss_pred ---------------------------HHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q ss_pred HHHHHhcCCCCCHHHHHhhhhHHHHhhcCChHHHHHHHHHHHHHHhhccCccccHHHHHhhhcCCChhhHHHHHHHHHHH
Q 000156 1239 FDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318 (2015)
Q Consensus 1239 ~~~l~~~~y~l~~~Ea~~~lP~L~~K~Gd~k~~vr~~v~~il~~i~~vy~~skvf~~l~~gl~sKN~r~R~ecl~~l~~l 1318 (2015)
+....+.+...-..--..++|.+-. ..++.+.+++ || ++..++.+
T Consensus 622 i~~t~~~~~~~vs~~e~aL~p~fq~-------Il~eDI~Efi-------------PY---------------vfQlla~l 666 (960)
T KOG1992|consen 622 IRKTCKANPSAVSSLEEALFPVFQT-------ILSEDIQEFI-------------PY---------------VFQLLAVL 666 (960)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHH-------HHHHHHHHHH-------------HH---------------HHHHHHHH
Q ss_pred HHhhCCCcccccchH--HHHHHhhccCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCH
Q 000156 1319 IDHHGAEISGQLKSL--QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTD 1375 (2015)
Q Consensus 1319 i~~~g~~~~~~~k~l--~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~vg~Ls~ 1375 (2015)
++..+-....+-.++ ..+...+=+|..+|- |+-+|-.++...|.....-.+++++
T Consensus 667 ve~~~~~ip~~~~~l~~~lLsp~lW~r~gNip--alvrLl~aflk~g~~~~~~~~~l~~ 723 (960)
T KOG1992|consen 667 VEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIP--ALVRLLQAFLKTGSQIVEAADKLSG 723 (960)
T ss_pred HHhcCCCCchhHHHHHHHhcCHHHHhhcCCcH--HHHHHHHHHHhcCchhhcccccchh
No 317
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.52 E-value=3.9e+02 Score=26.44 Aligned_cols=67 Identities=10% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHhhhcchhhhHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 000156 325 EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQ 391 (2015)
Q Consensus 325 ~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~aL~ 391 (2015)
++++-+..++. ..+..|....+.|+..|...-+.....-++.++..+-...++....+...|.+++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 55666666655 56778899999999999998888888888889988888888888888888877765
No 318
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.35 E-value=4.5e+02 Score=27.78 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=46.5
Q ss_pred ChHhHHHHHHHHh---hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHHh-----c----CCCHHHHHHHHH
Q 000156 400 NLVDVVEDVKTSV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----N----DGTPEVRDAAFS 467 (2015)
Q Consensus 400 ~l~~il~~l~~~L---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~L-----~----Ds~~~VR~aA~~ 467 (2015)
.+..|++.|..-| ++++|.+..-+|..|..++.+.+...+. .+..-...|..+. + |....||+.|.+
T Consensus 36 ~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~-~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 36 DCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD-ELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH-HHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 3466788888888 7899999999999999988876654332 2222223333222 2 222359999998
Q ss_pred HHHHH
Q 000156 468 VLAAI 472 (2015)
Q Consensus 468 al~~l 472 (2015)
.+..+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87544
No 319
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.13 E-value=2.5e+03 Score=29.50 Aligned_cols=320 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhhh-----cchh---hhHHHHHHHHHHHhhhC-----hhHHHHHHHHHh-hhCCC
Q 000156 666 VINYLAATATKFPKKCVVLCLLGISERV-----ADIK---TRAHAMKCLTTFSEAVG-----PGFIFERLYKIM-KDHKN 731 (2015)
Q Consensus 666 ~l~~l~~~~~~~~~~~~~~il~~LveKl-----gD~K---~r~~a~~~L~~l~e~~~-----~~~Vl~~L~~~l-~~~Kn 731 (2015)
++..+...+++..-+.+-..+-...+++ .|.+ .++++..+...-+-.+. -.+..+++++.+ ..+.|
T Consensus 420 L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~~~~~~ 499 (978)
T KOG1993|consen 420 LYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELANDHGN 499 (978)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhhhcccc
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHhcCCCCC-chhHHHHHHHHHHHH---HHHhChhHHhhhhhccHHHHH
Q 000156 732 PKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSS-AAATRNATIKLLGAL---HKFVGPDIKGFLADVKPALLS 807 (2015)
Q Consensus 732 pKv~~~~l~~L~~li~~fG~~~l~~k~li~~l~~~gL~~s-n~~VR~aA~~ll~~L---y~~~G~~l~~~L~~lkp~ll~ 807 (2015)
-|+....+.|+-.=--.+....--...+-..+..+ +.+. |..||=++...+..+ +.++.+++.+|++++--.+.+
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnL-L~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNL-LQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHh-cCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHhcCCCCCCCCCcccccCccccCCCCCCCCCCCCCcccccccchHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Q 000156 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (2015)
Q Consensus 808 ~Le~ef~k~~~~~~p~p~R~~r~~~~~~s~~~~~~d~lprvdIs~~L~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~ 887 (2015)
.+..- ..-..|.--+..+..++...+..
T Consensus 579 ll~~~----------------------------------------------------~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 579 LLKAV----------------------------------------------------EECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHH----------------------------------------------------hhhhhHHHHHHHHHHHHHHHHHh
Q ss_pred CCCCChhhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000156 888 IQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (2015)
Q Consensus 888 I~~~~~~eL~~~L~~rL--~DsN~~V~~~Al~~l~~La~alg~~f~~~~~~llp~ll~~L~D~k~~Vr~aa~~aL~~i~~ 965 (2015)
|.|.. ++++..|-..- ......++..-+.++..++.++|..-..+-..++|.+--+..-+.+.-.--...++.-|..
T Consensus 607 I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 607 IAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred hhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Q ss_pred hcC--------chhhHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCCCCChhhhHHHHHhhcCCCChHHHHHHHHHHH
Q 000156 966 AVH--------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (2015)
Q Consensus 966 ~~g--------l~~ll~~l~~~L~~~k~~p~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~~VR~aA~~~L~ 1037 (2015)
.++ +-.++|.+...++.. .+-=..++..+..++--.+.. -+......+.+-++|--.+||..+..++-
T Consensus 686 ~L~n~~~l~p~ll~L~p~l~~~iE~s---te~L~t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avL 761 (978)
T KOG1993|consen 686 TLMNSQKLTPELLLLFPHLLYIIEQS---TENLPTVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVL 761 (978)
T ss_pred HHhcccccCHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHc
Q 000156 1038 EILRAG 1043 (2015)
Q Consensus 1038 ~l~~~~ 1043 (2015)
.+...+
T Consensus 762 kiveil 767 (978)
T KOG1993|consen 762 KIVEIL 767 (978)
T ss_pred HHHHHH
Done!