Query 000157
Match_columns 2015
No_of_seqs 390 out of 1409
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 21:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0902 Phosphatidylinositol 4 100.0 8E-299 2E-303 2739.1 106.8 1737 15-2015 1-1803(1803)
2 KOG0904 Phosphatidylinositol 3 100.0 7E-102 2E-106 943.3 33.2 497 1485-2005 550-1071(1076)
3 KOG0906 Phosphatidylinositol 3 100.0 2.9E-99 6E-104 900.1 37.3 506 1477-2011 272-840 (843)
4 KOG0905 Phosphoinositide 3-kin 100.0 8.4E-95 1.8E-99 892.5 39.5 494 1493-2011 837-1347(1639)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 2.2E-86 4.8E-91 779.8 38.4 342 1661-2011 2-354 (354)
6 cd05167 PI4Kc_III_alpha Phosph 100.0 1.3E-86 2.7E-91 774.8 34.4 304 1707-2014 1-311 (311)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 2E-83 4.3E-88 757.4 37.4 342 1661-2011 2-354 (354)
8 cd05176 PI3Kc_C2_alpha Phospho 100.0 6.5E-83 1.4E-87 750.3 36.7 343 1660-2011 1-353 (353)
9 cd00894 PI3Kc_IB_gamma Phospho 100.0 3.4E-81 7.4E-86 739.3 36.8 341 1662-2008 3-361 (365)
10 cd00891 PI3Kc Phosphoinositide 100.0 5.4E-81 1.2E-85 740.1 36.2 340 1661-2011 2-352 (352)
11 cd05166 PI3Kc_II Phosphoinosit 100.0 1.9E-80 4E-85 734.6 38.1 342 1661-2011 2-353 (353)
12 cd05175 PI3Kc_IA_alpha Phospho 100.0 2.5E-80 5.4E-85 729.5 36.3 344 1662-2010 3-365 (366)
13 cd05165 PI3Kc_I Phosphoinositi 100.0 8E-80 1.7E-84 729.4 35.2 339 1662-2008 3-363 (366)
14 cd05173 PI3Kc_IA_beta Phosphoi 100.0 5.2E-79 1.1E-83 721.7 36.6 340 1662-2010 3-360 (362)
15 cd05174 PI3Kc_IA_delta Phospho 100.0 4.7E-79 1E-83 720.2 36.2 340 1662-2010 3-360 (361)
16 cd00896 PI3Kc_III Phosphoinosi 100.0 2.7E-78 5.8E-83 716.2 34.7 338 1661-2012 2-349 (350)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 4.9E-78 1.1E-82 697.9 28.5 288 1718-2014 2-289 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 5.9E-72 1.3E-76 648.4 29.4 263 1746-2013 25-292 (293)
19 KOG0903 Phosphatidylinositol 4 100.0 6.2E-65 1.3E-69 617.6 27.0 264 1746-2013 580-846 (847)
20 COG5032 TEL1 Phosphatidylinosi 100.0 4.2E-51 9.1E-56 564.0 32.4 292 1707-2014 1758-2100(2105)
21 cd00892 PIKKc_ATR ATR (Ataxia 100.0 2.3E-49 5E-54 449.9 23.1 223 1723-1961 7-235 (237)
22 cd00142 PI3Kc_like Phosphoinos 100.0 2.7E-49 5.8E-54 444.5 23.0 214 1719-1955 3-218 (219)
23 cd05172 PIKKc_DNA-PK DNA-depen 100.0 2.8E-49 6.1E-54 448.5 22.6 227 1717-1961 2-233 (235)
24 smart00146 PI3Kc Phosphoinosit 100.0 5E-48 1.1E-52 429.3 21.5 194 1755-1963 1-199 (202)
25 cd05169 PIKKc_TOR TOR (Target 100.0 9.7E-48 2.1E-52 445.9 21.4 228 1718-1961 3-278 (280)
26 cd05164 PIKKc Phosphoinositide 100.0 1.8E-47 3.9E-52 430.7 22.7 214 1718-1955 3-221 (222)
27 cd05171 PIKKc_ATM Ataxia telan 100.0 2.8E-46 6E-51 433.7 22.0 222 1724-1961 8-277 (279)
28 cd05170 PIKKc_SMG1 Suppressor 100.0 4.4E-43 9.6E-48 411.7 23.2 225 1724-1962 8-306 (307)
29 cd00871 PI4Ka Phosphoinositide 100.0 9.9E-43 2.1E-47 377.3 15.1 175 1473-1654 1-175 (175)
30 PF00454 PI3_PI4_kinase: Phosp 100.0 2.9E-42 6.4E-47 388.4 18.5 204 1754-1962 2-234 (235)
31 PTZ00303 phosphatidylinositol 100.0 8.8E-41 1.9E-45 401.1 26.7 278 1704-1996 936-1325(1374)
32 KOG0890 Protein kinase of the 100.0 1.1E-38 2.3E-43 421.3 34.7 427 1537-2005 1858-2377(2382)
33 cd05163 TRRAP TRansformation/t 100.0 6.3E-37 1.4E-41 351.3 21.2 220 1728-1961 12-251 (253)
34 KOG0892 Protein kinase ATM/Tel 100.0 5.5E-33 1.2E-37 369.0 24.5 241 1715-1973 2442-2732(2806)
35 smart00145 PI3Ka Phosphoinosit 100.0 2.6E-32 5.6E-37 299.9 13.5 166 1474-1650 3-174 (184)
36 cd00872 PI3Ka_I Phosphoinositi 100.0 9.5E-32 2.1E-36 292.0 12.6 158 1481-1649 6-168 (171)
37 cd00869 PI3Ka_II Phosphoinosit 100.0 1.4E-31 3E-36 289.5 13.0 144 1481-1625 6-154 (169)
38 cd00870 PI3Ka_III Phosphoinosi 100.0 8.1E-31 1.8E-35 284.0 12.0 141 1481-1622 13-165 (166)
39 PF00613 PI3Ka: Phosphoinositi 100.0 8.7E-31 1.9E-35 288.2 11.0 166 1482-1662 13-183 (184)
40 cd00864 PI3Ka Phosphoinositide 100.0 1E-29 2.2E-34 272.3 10.8 147 1473-1623 1-152 (152)
41 KOG0891 DNA-dependent protein 99.9 6.5E-24 1.4E-28 290.2 4.2 245 1704-1962 1947-2236(2341)
42 KOG0889 Histone acetyltransfer 97.5 0.00052 1.1E-08 98.7 12.1 186 1727-1919 3204-3443(3550)
43 KOG0902 Phosphatidylinositol 4 97.0 0.00091 2E-08 90.0 6.4 443 600-1152 514-986 (1803)
44 PF13575 DUF4135: Domain of un 94.3 0.31 6.8E-06 60.5 12.1 257 1714-2015 43-365 (370)
45 cd04792 LanM-like LanM-like pr 80.8 9.6 0.00021 52.3 12.0 131 1717-1892 89-219 (825)
46 TIGR03843 conserved hypothetic 77.5 1.8 3.8E-05 51.3 3.0 109 1784-1894 64-177 (253)
47 PRK04750 ubiB putative ubiquin 73.8 14 0.00031 48.7 10.1 28 1865-1892 284-315 (537)
48 COG0661 AarF Predicted unusual 68.5 3 6.6E-05 54.4 2.4 29 1865-1893 289-317 (517)
49 PRK14879 serine/threonine prot 54.8 35 0.00076 38.2 7.4 24 1865-1889 119-142 (211)
50 PF10707 YrbL-PhoP_reg: PhoP r 52.0 57 0.0012 38.0 8.5 89 1783-1885 71-166 (199)
51 TIGR01982 UbiB 2-polyprenylphe 49.5 12 0.00025 48.2 2.8 27 1865-1891 281-307 (437)
52 KOG0608 Warts/lats-like serine 49.2 14 0.00031 48.8 3.4 40 1851-1890 739-778 (1034)
53 KOG0616 cAMP-dependent protein 47.9 11 0.00024 46.1 2.2 34 1856-1889 155-192 (355)
54 cd05151 ChoK Choline Kinase (C 46.0 15 0.00033 39.4 2.6 26 1863-1889 110-135 (170)
55 TIGR03724 arch_bud32 Kae1-asso 44.9 41 0.00088 37.5 5.9 28 1860-1888 107-136 (199)
56 cd05145 RIO1_like RIO kinase f 42.2 16 0.00035 41.0 2.2 27 1862-1889 137-165 (190)
57 PRK10359 lipopolysaccharide co 41.1 16 0.00035 43.4 2.1 24 1865-1889 159-182 (232)
58 PF06293 Kdo: Lipopolysacchari 40.4 81 0.0018 36.3 7.5 46 1844-1889 119-169 (206)
59 cd05147 RIO1_euk RIO kinase fa 36.5 20 0.00042 40.8 1.8 26 1863-1889 138-165 (190)
60 KOG0605 NDR and related serine 36.0 67 0.0015 42.3 6.4 58 1949-2008 378-444 (550)
61 PRK05231 homoserine kinase; Pr 33.7 71 0.0015 38.6 6.0 81 1862-1954 189-269 (319)
62 PRK11768 serine/threonine prot 33.3 72 0.0016 39.3 6.0 75 1859-1952 195-269 (325)
63 cd05153 HomoserineK_II Homoser 33.1 63 0.0014 38.5 5.4 28 1862-1889 177-204 (296)
64 TIGR01767 MTRK 5-methylthiorib 33.0 1.2E+02 0.0025 38.9 7.7 28 1862-1890 194-221 (370)
65 cd05144 RIO2_C RIO kinase fami 31.5 40 0.00087 37.9 3.2 27 1865-1891 149-175 (198)
66 cd05042 PTKc_Aatyk Catalytic d 31.0 89 0.0019 36.1 6.0 26 1865-1890 124-149 (269)
67 cd05122 PKc_STE Catalytic doma 30.7 7.9E+02 0.017 27.4 15.1 51 1862-1912 119-170 (253)
68 PF02985 HEAT: HEAT repeat; I 29.1 71 0.0015 26.2 3.4 27 886-912 4-30 (31)
69 PRK10345 hypothetical protein; 28.9 91 0.002 36.5 5.5 83 1789-1885 63-153 (210)
70 TIGR02172 Fb_sc_TIGR02172 Fibr 28.8 37 0.0008 39.8 2.4 24 1864-1888 157-180 (226)
71 cd05069 PTKc_Yes Catalytic dom 28.7 3E+02 0.0065 31.7 9.7 25 1865-1889 126-150 (260)
72 KOG0598 Ribosomal protein S6 k 28.3 28 0.00062 43.6 1.4 34 1856-1889 136-173 (357)
73 cd05156 ChoK_euk Choline Kinas 28.3 41 0.00089 40.3 2.7 31 1859-1889 178-212 (302)
74 PF13646 HEAT_2: HEAT repeats; 28.0 66 0.0014 31.1 3.6 38 1556-1596 43-80 (88)
75 cd05100 PTKc_FGFR3 Catalytic d 28.0 7.8E+02 0.017 29.8 13.5 25 1865-1889 158-182 (334)
76 TIGR00938 thrB_alt homoserine 27.9 1.1E+02 0.0024 37.0 6.3 80 1862-1953 189-268 (307)
77 KOG0612 Rho-associated, coiled 27.7 94 0.002 44.3 6.0 125 1865-2006 199-335 (1317)
78 KOG0610 Putative serine/threon 27.3 2.2E+02 0.0047 37.0 8.5 93 1779-1891 129-229 (459)
79 TIGR02906 spore_CotS spore coa 27.2 1.7E+02 0.0037 35.0 7.7 29 1860-1889 187-215 (313)
80 cd05119 RIO RIO kinase family, 26.2 43 0.00094 36.8 2.2 25 1864-1889 138-162 (187)
81 PRK01723 3-deoxy-D-manno-octul 26.0 48 0.001 39.1 2.7 25 1865-1889 166-190 (239)
82 PF01636 APH: Phosphotransfera 25.8 39 0.00084 37.6 1.8 31 1859-1889 165-196 (239)
83 KOG0696 Serine/threonine prote 25.7 41 0.0009 42.9 2.1 101 1782-1891 389-500 (683)
84 COG5215 KAP95 Karyopherin (imp 24.2 3.9E+02 0.0084 36.0 10.0 130 377-523 471-608 (858)
85 cd08217 STKc_Nek2 Catalytic do 23.8 1.1E+03 0.024 26.7 13.0 48 1864-1911 133-182 (265)
86 KOG0690 Serine/threonine prote 23.5 39 0.00085 42.0 1.3 48 1842-1890 266-317 (516)
87 PRK12274 serine/threonine prot 23.4 68 0.0015 38.1 3.2 31 1860-1890 108-141 (218)
88 cd05154 ACAD10_11_like Acyl-Co 22.7 61 0.0013 36.1 2.6 30 1860-1889 174-205 (223)
89 KOG0603 Ribosomal protein S6 k 21.9 55 0.0012 43.7 2.3 28 1864-1891 438-466 (612)
90 cd05070 PTKc_Fyn_Yrk Catalytic 21.7 5.3E+02 0.012 29.6 10.0 25 1865-1889 126-150 (260)
91 cd08223 STKc_Nek4 Catalytic do 21.6 1.2E+03 0.026 26.4 13.7 25 1865-1889 126-150 (257)
92 KOG0583 Serine/threonine prote 21.5 2.8E+02 0.0061 35.2 8.3 108 1788-1912 81-194 (370)
93 PRK10271 thiK thiamine kinase; 21.0 70 0.0015 37.1 2.7 53 1839-1893 57-109 (188)
94 PF06176 WaaY: Lipopolysacchar 21.0 69 0.0015 38.3 2.7 23 1864-1887 158-180 (229)
95 cd05120 APH_ChoK_like Aminogly 20.3 81 0.0018 32.1 2.7 25 1865-1889 113-137 (155)
96 COG0401 Uncharacterized homolo 20.2 51 0.0011 31.4 1.1 31 637-678 11-43 (56)
No 1
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-299 Score=2739.11 Aligned_cols=1737 Identities=34% Similarity=0.496 Sum_probs=1524.7
Q ss_pred hhhHhhhHHHHhccCCCCcccccCCCcchhhhhHHHHHHHHHhhhCCCCCCCCchhHHHHHHHhcccCcCCCCCCCCCCC
Q 000157 15 PKQFSEKLAWICNRCPQPELLLSGSPRVSRSHLNAVLAVARFLSKCGDSADSRPKSVILEFIRAIPSSFNRSFWPQAFST 94 (2015)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2015)
|.|++|++.|+|.|||+.+|...+++|+|| |++.++.++.+.+..++.++|.+++..+++..+|.+|++++||
T Consensus 1 ~~q~a~~l~~~~lRlP~~~Wi~~~snr~~k--lp~~~s~~f~l~t~~~~i~~~~~~v~~e~~~~~~~~l~r~i~~----- 73 (1803)
T KOG0902|consen 1 HGQHADELVPMLLRLPHTKWILDSSNRSSK--LPIALSFSFCLNTLLSDIAARLPSVRQEILSAAPDALARSIYD----- 73 (1803)
T ss_pred CCccchhhhHHhcCCCCcchhhccCccccc--chHHHHHHHHHHhhHHHHhhhhhHHHHHHHHHhHHHHHHHhcc-----
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cchhhhHHhhhhhhccccCCCChhHHHHHhhhhhhhhhhhhccCCCCChhHHHHHHHHhhcCCCCCCCCchhhHHHHHHH
Q 000157 95 SDSISSFFTEFLGYVSKSCDDSPDFAAEVAGLTGEVIISAVCCYGAEDSGITRAFLLASSKNFPPILPSDANKLVTVLLE 174 (2015)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (2015)
.+.|..+||+++-|.+|++.++|.|++. |.+.++++..+.....+..+.+..|||+++.+-+++|+..++++++++.++
T Consensus 74 ~~~le~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~ll~~i~~~~~d~~~~~~~~~la~~~~~n~~~~~~~~~~lt~~t~~ 152 (1803)
T KOG0902|consen 74 QESLEHKYSLCILLMSCALGLLPSFGRF-ADYDEPLLSLIFPLPSDITKKLKSAFLALIRHRNSSISFTNSTSLTKSTSD 152 (1803)
T ss_pred HHHHhhhhhHHHHHHHHHhcccHHhCcc-chhhhhHHHhhccCCchHHHHHHHhhHHHHhhhccccccCCCcchheechh
Confidence 6789999999999999999999999999 999999988887755888889999999999999999999999999999999
Q ss_pred HhcCCC----CCCCCCCCCCCC--CCCcCCCCCCccCcCCCCCCCCCCCCCCCCCcccccCCc------eeecCCcceee
Q 000157 175 QLALPI----PASPREHIPINS--GTSSSQSSPLSANHLQPSQSNGSESSPGNEGASIVSGSS------VSMNGGASIFG 242 (2015)
Q Consensus 175 ~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~ 242 (2015)
+++... +-.+..++.++| .| +++++|++.|++.. ++.....|+.+.++..++.+ ++++-|--. -
T Consensus 153 ~lv~~~s~~S~~~e~~~~~~~S~~~t-~s~~a~~~~~~~~~--~~~~~~~~~~~~~s~~s~l~~~s~~~~~~~l~~~~-m 228 (1803)
T KOG0902|consen 153 PLVLTDSKSSFLIEVYNKLGASALLT-YSGGAKLTMNSELS--SKLFDSLIRLMDSSFLSHLSEISGFGFSGRLPLKS-M 228 (1803)
T ss_pred hhhhhccccchHHHHhhhhcCCCCCC-ccccceeccccccc--ccchhhhHHHHHHHHhhhhccccccceeecchHHH-H
Confidence 998877 555667788888 55 89999999999997 67788888888777555442 233222110 1
Q ss_pred ccccCCc-----hhhHHhhhccchhhhhhHhhhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhhHHHHHhhhcccc
Q 000157 243 GFTMNDG-----QQFRQQVASFEEESVESLEKQEIAFKLITHVLDKVQIDTKLLEQIRFLAKRQLQSMSAFLKIRKRDWT 317 (2015)
Q Consensus 243 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d~~ 317 (2015)
++++|.+ ..++++++.|+++..|+. +++.+.++|+.++++++|+++++.|+|+||+++++||+.++|||+
T Consensus 229 ~~~~n~~~~~~~~d~~~~~d~~~~~~~e~~-----~~~slq~~l~~~~i~t~~~~ei~~~s~~~~~~~~~~L~~l~~s~~ 303 (1803)
T KOG0902|consen 229 SEIFNLCCLTLNEDVLGPYDVFNSDKSEEN-----CGTSLQEILPSSKISTKFAKEISFFSKTQLSKLDAELSSLQHSSE 303 (1803)
T ss_pred HHHHhhhhcccchhhhchhHHHhcccchHH-----HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445544 678999999999999877 999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhhchhhhchhheeheehhhccccccccchhHHHHhHHHHHHHHhhhhhhhhcchhhHHHhhhhhhhhhHH
Q 000157 318 EQGPLLKARINAKLSVYQSVARLKIKSLSSLDMEGKTSKRLVLETLALLVDAAESCLLSVWRKLRVCEELFSSLLAGIAQ 397 (2015)
Q Consensus 318 ~~~~~~~~~~~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~~~~~~~~~~~~~~f~~~~~~~~~ 397 (2015)
|+.+.++ |++|+++|||+|+++|+++| +..+|.+.|..+..|+.+....|+.+.|++...|.+.+..|..+.+.
T Consensus 304 ~~~~~~~-----kl~v~~aa~~l~~~~~~sl~-d~~As~~cv~~t~~l~a~~~~~~i~~~~p~~~~~~~~~~~lae~f~~ 377 (1803)
T KOG0902|consen 304 ESLSTLV-----KLNVQSAAACLDLIVLPSLI-DMDASAICVEITVRLFANTPGRLIISMVPLPYTCTETSNMLAERFPK 377 (1803)
T ss_pred hhcceee-----eeehhhhhhhcchHHHhhHH-HhhhhhHHHHHHHHHHhcchhhHHHHhhhcccchHHHHHHHHHHHhh
Confidence 9999995 99999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCchhhhhhcccchHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhhcccCCchHHHHHHhhh-HHHhhccchh
Q 000157 398 IAVIRGGQPLRVLLIRLKPLVLTACAQGDTWGSSKGAMFETVMKTSCEIIESGWTKDRAPVDTFIMGLA-TSIRERNDYD 476 (2015)
Q Consensus 398 ~a~~~~~~~lr~fl~~~~p~~~~~~~~~~~~~~~~~~~~e~~~~~~c~~l~~~~~~d~~~v~a~l~~l~-~~~~~~~~~~ 476 (2015)
+|.+.++++|++||+.|.|.++++|+.+| |+++.|.--+.+ ..+++.+..+++.++.++.... ..+|+++.++
T Consensus 378 ~~~~~~~~~l~v~li~~~p~lLs~~~~~d-----~~~l~e~~i~is-~~ie~s~s~~~n~~~~~~~~~~~d~~r~~ai~s 451 (1803)
T KOG0902|consen 378 GASKEICQPLIVFLIYPDPNLLSVAEDPD-----QSALLERAISIS-DTIESSYSSTLNVMDIAIFLKLLDTLREIAIMS 451 (1803)
T ss_pred hhhccccchHHHHHhhccchhhhhcccCC-----hhhhhhhhhhcc-cceeecccccchhHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999999999999997776 366677666666 8889999999999999998553 3499999999
Q ss_pred HHhhhhccccchhhhhHHHHhhceeeeecchhhhhhHHHHHHHhhhcCCCCCCchhHHHHHHHhhhhhhcCcchHHHHHH
Q 000157 477 EQVEKEKQAVPAVQLNVIRLLADLTVAVNKSEVVDMILPLFIESLEEGDASTPSLLRLRLLDAVSHMASLGFEKSYRETV 556 (2015)
Q Consensus 477 e~~~~e~~~~~lv~~N~I~~lg~i~v~l~~~~~~~~il~~f~q~~~~~~~~~ps~ld~lildql~~m~~~~~~~~~~e~~ 556 (2015)
+..+.|+. +.+++.++..+++..... +++|+++||+||| ++ |+| +|+++|
T Consensus 452 ~~~~~~~~-~~~~~~lI~~fla~l~~r-~t~Ev~e~v~~I~--~~----a~~----------------------~y~d~~ 501 (1803)
T KOG0902|consen 452 IDVGLEAY-SLAESLLIQAFLAALSTR-TTVEVGEMVLQIL--YF----ANP----------------------SYEDLW 501 (1803)
T ss_pred Hhhccccc-cchhHHHHHHHHHHhccc-cchHHHHHHHHHH--Hh----cch----------------------HHHHHH
Confidence 99888875 899999999999998887 6799999999999 55 666 999999
Q ss_pred HHHHHHhhhhccccccccccccccchhhhHHhh--hhhhHHHHhhhccccccchHHHHHHHHHhhhccccccccCCC---
Q 000157 557 VLMTRSYLSKLSIVGSAESKTMAAEATTERVET--LPAGFLLIAGGLRNAKLRSDYRHRLLSLCSDVGLAAESKSGR--- 631 (2015)
Q Consensus 557 ~l~t~~~~~~~s~~~s~~~~~~~~~~~~~~~~~--l~~a~~~IA~~l~~~~~~~~yL~~LLElfvq~Gl~~~~~s~s--- 631 (2015)
++|+++.++.++.+++.. +. .++++.. +++|+++||++.+++...++||..|||+|++.|++|++....
T Consensus 502 ~l~s~~~l~~~~~v~~~~-----~~-~dy~hlsLali~a~~~iaa~~~~e~~k~~ll~~Llel~~~ig~~ge~~~~e~~~ 575 (1803)
T KOG0902|consen 502 RLMSQISLCESSSVKSIM-----NT-FDYRHLSLALIVAMCEIAAGEESEHFKSTLLMALLELFVQIGLEGETKDLESKS 575 (1803)
T ss_pred HHHHHHHHHHHHHHHhhh-----cc-cchHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhhcCCcccccccc
Confidence 999999999999888621 12 4455544 589999999999999999999999999999999999876532
Q ss_pred -----CCccccccChHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCCccCCCCcccccccccccCCCCcccc
Q 000157 632 -----SGADFLGPLLPAVAAICSDFDPTVDVEPSLLKLFRNLWFYIALFGLAPPIQKTQPPVKSVSSTLNSVGSMGTIPL 706 (2015)
Q Consensus 632 -----s~A~~Lg~LLppLA~Ll~~l~p~~~~~~~l~kLFRD~WFy~VVhGF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (2015)
++|++||.|+|++|+++++.+|++++.|.+.|+|||+|||||+|||+
T Consensus 576 ~~k~sr~a~~i~aLv~~ia~l~~s~pPi~e~~p~~~~lfrd~wf~~vi~gf~---------------------------- 627 (1803)
T KOG0902|consen 576 MLKVSRSAGNIGALVERIAALLRSTPPIKEDLPILKKLFRDFWFYLVIVGFS---------------------------- 627 (1803)
T ss_pred HHHHHhhhhhhhhhhhhhhcccccCCCcccccHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 58999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCchhhHHHHHHHHhcCCCccccCcccchhhhhccccCCCCCcCCCCchhhhHHHHHHHHHHcCCCccccccc
Q 000157 707 QAVTGPYMWNTQWSSAVQHIAQGTPPLVVSSVKWLEDELELNALHNPGSRRGSGNEKAAGTQRAALSAALGGRVEVAAMS 786 (2015)
Q Consensus 707 ~~v~~~~lWp~eW~~~l~~IA~kSPPLV~s~~~~lEseLElNti~n~~lRrgs~~e~~~~~qR~~L~~~L~~~~evs~i~ 786 (2015)
|+||++||++|++||++|||||+++..+.+++|||||+ +|+|+++++. ++||+.|+..+++ ++..+|
T Consensus 628 ------~~w~e~w~~~l~~iA~~TP~Lv~~~~~~~~~~LelNa~----lr~ds~~e~~-st~~~~L~~~~~~--~~~~~n 694 (1803)
T KOG0902|consen 628 ------GLWPEEWYNDLLEIATNTPPLVSEDTGYNNSVLELNAA----LRQDSGSENI-STQKRELSHSLED--ESALIN 694 (1803)
T ss_pred ------CCCchHHHHHHHHHhcCCCceEecccCCcchHHHHHHH----HcCCCcchHH-HHHHHHhcccccc--chhhhh
Confidence 58999999999999999999999999999999999996 4888888887 8999999999987 677899
Q ss_pred cccchhHHHHHHHHHHHHhhcccCCCCccCCccccccccccchhheeccCCCCc-chHHHHHHHHHHHHHHHHHHHHHHh
Q 000157 787 TISGVKATYLLAVAFLEIIRFSSNGGILNGGTSLTAARSAFSCVFEYLKTPNLM-PSVFQCLNAIVLRAFETAVSWLEER 865 (2015)
Q Consensus 787 ~LS~~k~~yLlAV~~LEtLR~~s~~g~~~~~~~~~~~~~s~s~if~Yl~Dpsi~-~~~~~cm~aia~kvf~~fl~~l~~~ 865 (2015)
++|++++|||+||++||+|||.+. . +|+..|+||+||+++ ++++|||.|||+++|.+|+.+ +
T Consensus 695 ~ls~s~~tfLlaV~~lE~mR~l~~-------------~-~~s~~~~yfed~sl~~s~~~qcl~aia~~~f~~~~~~---~ 757 (1803)
T KOG0902|consen 695 RLSFSKITFLLAVRLLETMRCLSF-------------I-KFSATFEYFEDPSLRNSGLLQCLHAIASRGFMKFVES---S 757 (1803)
T ss_pred hchHHHHHHHHHHHHHHHHHhhhc-------------c-chHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHH---h
Confidence 999999999999999999999741 1 599999999999997 799999999999999998875 2
Q ss_pred hhccCchhhhhHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccCccccCcCchhhhh-----------cccccCC
Q 000157 866 TAETGKEAEIKESTLFAHACFLIKSMSQREEHLRDTAVNLLTQLRDKFPQVLWHSSCLDSLL-----------FSFDSDA 934 (2015)
Q Consensus 866 ~~~~~~~~~~~e~~l~~ha~fLLv~fnHr~~~Iq~vAd~~ls~LI~~FPsLLW~~scLd~Ll-----------~s~~~~s 934 (2015)
. .+...+|+++..|+++||++||||+..+|+|||.|++.||+.|||+||+..+|-+++ .+.+++.
T Consensus 758 l----~~~~~~e~~l~~haq~Ll~~f~h~~~~~r~vad~~~~~lV~siP~ll~~~~vL~tiL~~l~~l~~~l~~d~~~k~ 833 (1803)
T KOG0902|consen 758 L----FNKVRNERELKAHAQKLLLEFNHRFLAVRNVADICLSPLVRSIPSLLWVLYVLYTILSLLQELEDSLLVDLTCKE 833 (1803)
T ss_pred h----ccchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcC
Confidence 2 234779999999999999999999999999999999999999999999999975532 2333332
Q ss_pred C----------eeEecC-hhhHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhcccccCCCchhhhhhhhheee
Q 000157 935 S----------SAVIND-PAWVATVRSLYQRLVREWVLTSLSYAPCTTQGLLQDKLCKANNWQRAQPTTDMVSLLSEIRI 1003 (2015)
Q Consensus 935 ~----------sv~l~d-~~~r~tl~~ll~k~ak~Wv~~AL~~AP~dtKsLLQeYLs~~~~~~~~~~t~d~~sL~~~i~l 1003 (2015)
| +|.++| ..||.++-....++|+.|++++|+|||.+||++||+|++++.+..++.+.| +++
T Consensus 834 P~~~~~~~~~~~V~l~d~~~~R~s~v~~f~~~~~~~i~~~~~~ap~~tk~nL~~yls~~~~~l~~~~~g--~s~------ 905 (1803)
T KOG0902|consen 834 PQLVIKSSSIYTVRLLDSISTRESVVKDFSRRVKFWIQEALKAAPALTKSNLQSYLSDIEDGLRSVEDG--LSL------ 905 (1803)
T ss_pred cceeeccCCceEEEechhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHhhcceehhh--HHH------
Confidence 2 477777 668888888888999999999999999999999999999985544433322 222
Q ss_pred ccCcCCCCCCccccchhHHHHHhhhhcCCCCCchhhhhh-ccccceecccccchhhhhhhHHHhhhcccCccCCCCCCCC
Q 000157 1004 GTCKNDCWPGIRTANIPAVTAAAAAASGATLKPAEALEV-LSTGIVSATVKCNHAGEIAGMRRLYNSIGGFQSGTMPTGS 1082 (2015)
Q Consensus 1004 G~~k~~~~~G~~~~~v~~~~~s~~~~~~~~~~~s~~l~~-~s~~~~s~~lrs~~Age~ag~~~~~~~~~gf~~~~~~~~~ 1082 (2015)
++.+++...|.+ +.++.. ...++..+++++.+++++.||... .+
T Consensus 906 ------------------aie~~~~i~~~~---~S~ft~~yqr~is~~~v~~~~s~~l~~~ii~-~~------------- 950 (1803)
T KOG0902|consen 906 ------------------AIELIGEIAGSR---SSEFTLSYQRSISFLQVNSLLSTALKDMIIE-ST------------- 950 (1803)
T ss_pred ------------------HHHhhhcccCCC---chhhhhccccchhhhccCchhhhhHHHHHHH-HH-------------
Confidence 223332222111 112111 111233455666666666665431 10
Q ss_pred CCCCCCccccccccccCCCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhccCCCCCCCccc
Q 000157 1083 FGFGGGFQRLISGAFSQQPQTEDDSFNEMLLSKFVHLLQQFVNVAEKGGEVDKGQFRETCSQATALLLSNLDSNSKSNVE 1162 (2015)
Q Consensus 1083 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~rAaALLi~~~~~~~~~~~~ 1162 (2015)
.+.+...+.++.++.+.++..++ ....+..++.+-+|...+..+
T Consensus 951 --------------------------~~~ie~~l~~~~~~~e~~~~~~~--~~~~~~~a~~ll~a~~~s~~~-------- 994 (1803)
T KOG0902|consen 951 --------------------------LELIEQILNRLEKKEEKILFMGG--IHQRFQEAFVLLTAKRFSSDE-------- 994 (1803)
T ss_pred --------------------------HHHHHHHHHHHHhhhHHHHhcCC--ccHHHHHHHHHHHhHHHhhcc--------
Confidence 11111222223334444444443 223333344445555555433
Q ss_pred chhhHHHHHhhccccccCHhHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhcCCcccCCCCCCCCcccccCCCCC
Q 000157 1163 GFSQLLRLLCWCPAYISTPDAMETGVFIWTWLVSAAPQLGSLVLAELVDAWLWTIDTKRGLFATDVRYSGPAAKLRPHLA 1242 (2015)
Q Consensus 1163 ~~~~Ll~~lv~~P~~~FT~~sm~~ai~~W~wll~erP~le~~lL~Ei~~aW~~TI~~r~GLFs~~~~~~~P~a~~~~~~~ 1242 (2015)
++++|+|+|||||+++||+++||+|++||+|+++++|+++..+|.|++++|.|||+.|.|||+.+.++.+|++...++..
T Consensus 995 v~s~Ll~~lv~~Pl~~ft~~s~k~a~~~Wnwlvs~~p~v~sl~l~e~~~aw~~tv~~k~GLfs~~v~~~~Pla~~~~~~p 1074 (1803)
T KOG0902|consen 995 VSSQLLSLLVRIPLYRFTPSSMKLATNFWNWLVSAKPEVSSLLLEEPAGAWKMTVEQKFGLFSAEVKEGDPLAASEAHQP 1074 (1803)
T ss_pred chHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhcccceeecccccCchhhhhccCC
Confidence 23899999999999999999999999999999999999999999999999999999999999999999999987644333
Q ss_pred CCCCCCCCCCCcccccchHHHHHHHHhhhheeeecCCHHHHHHHHHHHHhhcCCCCcc-----ccCccchhhhHHhhhhh
Q 000157 1243 PGEPEPQPEIDPVQQIIAHRLWLGFFIDRFEVVRHNSVEQLLLLGRMLQGTTNFPWKF-----SRHPAAAGTFFTLMLLG 1317 (2015)
Q Consensus 1243 p~~~~~~~~~~~~~~~~PH~~~i~Fl~s~f~~~~~~s~~~~~i~~~ll~~~l~~~~~~-----s~hp~a~~~rf~ll~~g 1317 (2015)
|..| +++.||++||+||.+|||+++|+|.+|+++|.++++++++....+ ++|++|+|+||+++.+|
T Consensus 1075 ~~~p---------~~~~pH~~wi~Fl~~rfe~~~y~s~~ql~i~~~~~~~~i~~~~~~s~~~~~~~~~a~g~~f~l~tlg 1145 (1803)
T KOG0902|consen 1075 KPSP---------PNVTPHYIWIDFLVQRFEIAKYCSSDQLEIFSHLLQRSISLNIGDSVGSMNRHVAAIGLRFKLLTLG 1145 (1803)
T ss_pred CCCc---------hhccchHHHHHHHHHHccccccccchHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHhhhh
Confidence 3221 478999999999999999999999999999999999999987644 45999999999999999
Q ss_pred cccccccccccccccccchHHHHHHHHHhcccccccCCccCCccchhhhhhHHHHHHHHHHHHHhhhccccccccCCCcc
Q 000157 1318 LKFCSCQSQGYLQNFKSGLQLLEDRIYRASLGWFAYEPEWYDINCVNFAQSEAQSLSLFLHYLLNERADAFQHDAKGRGH 1397 (2015)
Q Consensus 1318 l~~~~~~~~~~~~~~~~~~~~Lr~~iy~~aL~wF~~~p~w~~~~~~~~~~~e~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 1397 (2015)
|+. .+++....+...++||++||++||+||+.||+||++++..+++.+...++.|.++...-+....
T Consensus 1146 L~~----~~a~~~l~~~~~~rl~~~iy~~al~yFs~~p~wpt~~~~~l~~~i~~~is~~~~L~~~~~~ls~--------- 1212 (1803)
T KOG0902|consen 1146 LSL----LHADVVLNATIRNRLREKIYSTAFDYFSRPPKWPTQGEKRLREDISIMISFWEDLFSDKKYLSA--------- 1212 (1803)
T ss_pred hhH----HHHHhccCchHHHHHHHHHhhhccceeccCCCCCCccHHHHHHHHHHHHHHHHHHHHhHHHhhH---------
Confidence 996 4777888888999999999999999999999999999987765544445444444332211100
Q ss_pred cCCCcccccccccCccccccccchhhHHHHHHHHHHHhhhhhcccccccCCCCCCCCCCCCCC-CChhHHHHHHHHHHhh
Q 000157 1398 ENGSALVDVNDQFHPIWGQIENYDVGREKRKQLLLMLCQHEADRLDVWAHPIISKESVSSRPR-ISSEKLVEYARTAFQV 1476 (2015)
Q Consensus 1398 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~LLl~Ll~~Ei~rL~vW~~Pl~~~~~~~~~~~-i~~~~w~~~~~~Aw~~ 1476 (2015)
. ...+ ..||+ ||++|++||++||.+|++|+...+ .++.+ .+.+.|.++++.||++
T Consensus 1213 --------~-~lr~------------~dK~r-lL~~lla~Ei~rl~tWltP~a~~~--~~~~~a~~~~~~~~~~~~~~~~ 1268 (1803)
T KOG0902|consen 1213 --------S-SLRP------------PDKRR-LLLELLAHEIERLLTWLTPLAICE--NWRSKAKSSEITNENVQLAFSI 1268 (1803)
T ss_pred --------H-hcCC------------ccHHH-HHHHHHHHHHHHHHhhcCchhhhh--hhcccchhhHHHHHHHHHHhhc
Confidence 0 0000 01444 999999999999999999999887 35665 6778999999999999
Q ss_pred ChHHHHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCchhchHHHHHhCCCCCCCCHHHHHHhcCCCCCC
Q 000157 1477 DPRIALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKAVDEDSALLQQLPHWAACSITQALEFLTPAYKG 1556 (2015)
Q Consensus 1477 ~P~lal~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~~~e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~ 1556 (2015)
+|.+|+++++|||.++.+..|+..+|+.+|..+.++|+||++|+++...++....++++++|+|++|..+|.+|.|.+..
T Consensus 1269 ~p~lai~lp~r~~~~~~~~~~~~~~v~~~~~~~~~i~~al~~~~~~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~ 1348 (1803)
T KOG0902|consen 1269 SPLLAINLPSRFPNSPSLKEEVTRLVRFDPADLVHIPEALKLFVTQKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKP 1348 (1803)
T ss_pred ChHHHHHHHHhcccchhhhHHhhHHhhcChhhhhccHHHHHHHhccCcccccccchhheeeccccCcccchhhcccccCC
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999998888
Q ss_pred CHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCChhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccccccc
Q 000157 1557 HPRVMAYILRVLESYPPERVTFFMPQLVQALRYDDERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSVK 1636 (2015)
Q Consensus 1557 ~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~k 1636 (2015)
||.+.|||+++|+++|+++++||+||+||+||||+++|++.||++.|.+|+.||||++|||++|+|.|+.+..+
T Consensus 1349 ~p~~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~------ 1422 (1803)
T KOG0902|consen 1349 HPRLMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKMGYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVK------ 1422 (1803)
T ss_pred CcHHHHHHHHHHHhCChhhhhhhhHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred cchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccCCCCh-HHHHHHHHHHHHHhhccCCCcccCCCCcce
Q 000157 1637 NGSFQTLLPMVRQRIIDGFNPKALDLFQREFDFFDKVTNISGALYPLPK-EERRAGIRRELEKIEMAGEDLYLPTAPNKL 1715 (2015)
Q Consensus 1637 ~~rf~~~L~~l~~~il~~~s~~~~~~~~rE~~f~dkLt~ISg~lk~~~K-~erk~~i~eeL~ki~~~~~~v~LP~nP~~~ 1715 (2015)
..|+++|++++++|++++++.+|+||+|||+||+++|+|||+++|++| +||+++|+++|++|++++ ++|||+||+.+
T Consensus 1423 -~~~~~~l~~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~kik~~~-~~YlPs~P~~~ 1500 (1803)
T KOG0902|consen 1423 -ADIGEILDRVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKIKVQP-GCYLPSNPDAV 1500 (1803)
T ss_pred -hhHHHHHHHHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhhcccC-ceecCCCCCce
Confidence 357899999999999999999999999999999999999999999988 999999999999999995 99999999999
Q ss_pred EEEeeccCceeeccCCCCcEEEEEEee--cCCCCCC-----CCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCce
Q 000157 1716 VRGIRVDSGIPLQSAAKVPIMITFNVV--DRDGDQS-----NVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNL 1788 (2015)
Q Consensus 1716 V~gI~~es~~vl~Ssak~Pl~ltF~~~--d~~G~~~-----~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL 1788 (2015)
|.+|++++|+++||++|+|+|++|+++ |.+|.+. .++||.+|||+|||||||||+||+|++|++||+..|||+
T Consensus 1501 v~~i~~~Sg~plQS~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~ 1580 (1803)
T KOG0902|consen 1501 VLDIDYKSGTPLQSAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDL 1580 (1803)
T ss_pred EEEeecCCCccchhhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 999999999999999999999999994 4456443 346889999999999999999999999999999999999
Q ss_pred eEeeeEEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCC
Q 000157 1789 YLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRH 1868 (2015)
Q Consensus 1789 ~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRH 1868 (2015)
+++||+|+||+|+||+||||||++||+|+|+++++|+||||..+||++++..|++||.||++|+|||||++|+||+||||
T Consensus 1581 ~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRH 1660 (1803)
T KOG0902|consen 1581 YLFPYRVVATAPGCGVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRH 1660 (1803)
T ss_pred EEeeeeeeccCCCCceEEeCCCCccHHHhcccccccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEccCCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHH
Q 000157 1869 NGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIIN 1948 (2015)
Q Consensus 1869 ndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~ 1948 (2015)
|||||||+.||++||||||||+.+||||++||+ |||||+||+.+|| |.+++..|++|.++|++||+++|+|++.|+.
T Consensus 1661 NGNim~Dd~G~~iHIDFGf~~e~sPGgnl~fE~-~fKLt~Em~~~mg--G~~~~~~f~~f~elcVk~yLA~R~~~~~iv~ 1737 (1803)
T KOG0902|consen 1661 NGNIMIDDQGHIIHIDFGFMFESSPGGNLGFEP-PFKLTKEMVMLMG--GKMEAKPFKWFQELCVKGYLAARPYMDAIVS 1737 (1803)
T ss_pred CCceeEccCCCEEEEeeeeEEecCCCCccCcCC-CccchHHHHHHhC--CCCCCCcHHHHHHHHHHHHHhhchhHHHHHH
Confidence 999999999999999999999999999999999 9999999999996 7888999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhhCcCC
Q 000157 1949 TVLLMLDSGLPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQGIEK 2015 (2015)
Q Consensus 1949 L~~LMl~SgLPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI~~ 2015 (2015)
+|.+|+++||||| ++++|+++|.||+|++||+||+.||.++|.+||++|+|++||+|||+|||||+
T Consensus 1738 ~V~~mldsgLPCf-rg~~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~YD~~Q~~~n~I~~ 1803 (1803)
T KOG0902|consen 1738 LVQSMLDSGLPCF-RGQTIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMYDQIQYLQNGIPY 1803 (1803)
T ss_pred HHHHHHhcCCCcc-CcchHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999 68899999999999999999999999999999999999999999999999997
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-102 Score=943.32 Aligned_cols=497 Identities=29% Similarity=0.496 Sum_probs=433.3
Q ss_pred hhcCCCchhhhHHHHHHHHhChhhhc-cCCCchhhcccc---CchhchHHHHHhCCCCCCCCHHHHHHhcCCCCCCCHHH
Q 000157 1485 ASRFPANASLKAEVTQLVQLHILDIR-CIPEALPYFVTP---KAVDEDSALLQQLPHWAACSITQALEFLTPAYKGHPRV 1560 (2015)
Q Consensus 1485 ~~rfp~~~~L~~e~~~Lv~k~r~~l~-~~PeAL~~~L~~---~~~~e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~p~V 1560 (2015)
..|-|.. .|+.+++++||.+|+++. +.|++||+++.+ ...+++++.+.+|..|+|++|+.||||||..|+ ||.|
T Consensus 550 ~~~d~l~-el~e~ekd~lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nyp-D~~V 627 (1076)
T KOG0904|consen 550 LARDPLS-ELTEQEKDLLWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYP-DPNV 627 (1076)
T ss_pred HhcCCcc-cchHHHHHHHHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCC-cHHH
Confidence 3466655 799999999999999995 569999999864 455678889999999999999999999999998 8999
Q ss_pred HHHHHHHHhcCCChhHHhhHHHHHHHhccCC--hhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccccccccc
Q 000157 1561 MAYILRVLESYPPERVTFFMPQLVQALRYDD--ERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSVKNG 1638 (2015)
Q Consensus 1561 RqYAVr~Le~~~dd~L~~YLpQLVQALRyE~--~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~k~~ 1638 (2015)
|.|||++|++++||+++.||+|||||||||+ ...+.+||++||+.|++|||+|||+|++|++.++. ..
T Consensus 628 R~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~----------~~ 697 (1076)
T KOG0904|consen 628 RAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSV----------QQ 697 (1076)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHH----------HH
Confidence 9999999999999999999999999999996 35567899999999999999999999999997643 35
Q ss_pred hHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccC-CCChHHH---HHHHHHHHHHhhc--cCCCcccCCCC
Q 000157 1639 SFQTLLPMVRQRIIDGFNPKALDLFQREFDFFDKVTNISGALY-PLPKEER---RAGIRRELEKIEM--AGEDLYLPTAP 1712 (2015)
Q Consensus 1639 rf~~~L~~l~~~il~~~s~~~~~~~~rE~~f~dkLt~ISg~lk-~~~K~er---k~~i~eeL~ki~~--~~~~v~LP~nP 1712 (2015)
||..+|+++++ |+ ..+.+.+.+|.+.+++|+.++..+| ..+|+.+ ++.++..++.... ..+++..|+||
T Consensus 698 RfgllLEaYlR----Gc-~~hlk~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~lq~l~sPLdP 772 (1076)
T KOG0904|consen 698 RFGLLLEAYLR----GC-THHLKVLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEALQNLQSPLDP 772 (1076)
T ss_pred HHHHHHHHHHh----cc-HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHHHhccCCCCh
Confidence 78888887765 44 6788899999999999999999988 4455432 3444444443321 12579999999
Q ss_pred cceEEEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEee
Q 000157 1713 NKLVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFP 1792 (2015)
Q Consensus 1713 ~~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~p 1792 (2015)
..+..++.+|+|++|.| ||+|+|+.|.+.|.+.+. ...+|||+|||||||||+|||+++|++||+.+|+|++|.|
T Consensus 773 ~~~lgel~iekckvM~S-kkrPLwl~~~Np~~~s~~----~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~P 847 (1076)
T KOG0904|consen 773 SLKLGELIIEKCKVMDS-KKRPLWLVFENPDAGSNL----SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLP 847 (1076)
T ss_pred hhhhcchhhhhhhhhhc-cCCceEEEecCCCcccCC----ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccc
Confidence 99999999999999988 899999999765532211 3589999999999999999999999999999999999999
Q ss_pred eEEEEccCCCceeEEecCchhhhhhhccCC----------CcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhh
Q 000157 1793 YGVLPTGPEKGIIEVVPNTRSRSQMGETTD----------GGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLL 1862 (2015)
Q Consensus 1793 Y~Viptg~~~GlIE~Vpns~S~~qlgk~~~----------~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYIL 1862 (2015)
|.|+|||...|+||+|+|+.|+.+|+..+. +.+..|+..+ + ++...+.+|.+.|+.|||||||+||||
T Consensus 848 Ygcls~Gd~iGlIEVV~~s~TIa~IQ~~~g~~~at~afn~~~L~~WLKek-N-p~e~kld~AIe~Ft~SCAGYcVATyVL 925 (1076)
T KOG0904|consen 848 YGCLSTGDRIGLIEVVRNSETIANIQLNTGNMAATAAFNKDALLNWLKEK-N-PGEDKLDAAIEEFTLSCAGYCVATYVL 925 (1076)
T ss_pred cccccccceeeeEEEecCchhhhhhhhccccceeeccCCHHHHHHHHhhc-C-chHHHHHHHHHHHHHhhccceeeeeee
Confidence 999999999999999999999998865432 2466676554 3 345669999999999999999999999
Q ss_pred cCcCCCCCceeEccCCcEEEEecccccccCC-CCCccCCCCCccCcHHHHHhhcCCCCCCChh-HHHHHHHHHHHHHHHH
Q 000157 1863 QPKDRHNGNLLFDNIGRLVHIDFGFILETSP-GRNMRFESAHFKLSHEMTQLLDPSGVMKSDT-WNQFVSLCIKGYLAAR 1940 (2015)
Q Consensus 1863 GIGDRHndNIMId~~GhlfHIDFGfIfg~~P-ggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~-f~~F~~lCv~aflaLR 1940 (2015)
||||||+|||||.++|++||||||||||+.. +-.+++||+||.||.+++.||+.++..+++. |++|+++|++||+++|
T Consensus 926 GIgDRHsDNIMvke~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr 1005 (1076)
T KOG0904|consen 926 GIGDRHSDNIMVKETGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALR 1005 (1076)
T ss_pred cccccccCceEEeccCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999753 2237899999999999999999777777777 9999999999999999
Q ss_pred hchhHHHHHHHHHhhCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhh-hChhHHHHHH
Q 000157 1941 RYMDGIINTVLLMLDSGLPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAY-NKWTTAGYDL 2005 (2015)
Q Consensus 1941 k~~~~Ii~L~~LMl~SgLPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~-~s~~T~~YD~ 2005 (2015)
+|.++|++||++|+.+|+|++++.++|++||+.+.++.|||||.+||+..+++|+ ++|+|++-=.
T Consensus 1006 ~H~nLfi~LFsmMl~~glPELss~~Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~ 1071 (1076)
T KOG0904|consen 1006 RHGNLFISLFSMMLGTGLPELSSKKDIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWL 1071 (1076)
T ss_pred HccccHHHHHHHHHhcCCCccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhh
Confidence 9999999999999999999999999999999999999999999999999999999 5999987433
No 3
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-99 Score=900.07 Aligned_cols=506 Identities=27% Similarity=0.434 Sum_probs=443.4
Q ss_pred ChHHHHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCchh---chHHHHHhCCCCCCCCHHHHHHhcCCC
Q 000157 1477 DPRIALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKAVD---EDSALLQQLPHWAACSITQALEFLTPA 1553 (2015)
Q Consensus 1477 ~P~lal~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~~~---e~~~~L~lL~~W~pi~p~~ALeLLs~~ 1553 (2015)
.++..++.+..|||++.++.|+++||||||+|+++.++||+|||++.+|. |+.++|.+|..|++++.+||||||++.
T Consensus 272 ~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~yL~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~ 351 (843)
T KOG0906|consen 272 KARDRLETIVNYPPSQVLTREERDLVWKFRYYLTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSY 351 (843)
T ss_pred HHHHHHHHHhcCCCccccchhhhhhhhhhhHHHhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhcccc
Confidence 34778889999999999999999999999999999999999999987764 667899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCC--------------hh--------------------------
Q 000157 1554 YKGHPRVMAYILRVLESYPPERVTFFMPQLVQALRYDD--------------ER-------------------------- 1593 (2015)
Q Consensus 1554 f~~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~--------------~~-------------------------- 1593 (2015)
|. ||.||+|||.+|+.++|+++..||+|||||||||. +.
T Consensus 352 f~-~~sVrayavsrl~~a~deelllYL~qlvqal~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tk 430 (843)
T KOG0906|consen 352 FT-HPSVRAYAVSRLKGADDEELLLYLLQLVQALKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTK 430 (843)
T ss_pred cc-CHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhccCCcccCcCcccccccccccccccCccccccCCCcccccc
Confidence 98 89999999999999999999999999999999996 11
Q ss_pred -------HHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccccccccchHHHHHHHHHHHHhhcCC-HHHHHHHHH
Q 000157 1594 -------LVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRQRIIDGFN-PKALDLFQR 1665 (2015)
Q Consensus 1594 -------lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~k~~rf~~~L~~l~~~il~~~s-~~~~~~~~r 1665 (2015)
.+++||++||..|+.+|++||||+++|+++.... .+|..++..+.+.+.++-. ...+..+..
T Consensus 431 e~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed~~~~----------kry~si~~~f~~~l~K~~d~r~~~~~L~~ 500 (843)
T KOG0906|consen 431 EAPKAASDLATFLISRALVNPQLANFLYWYLKVEIEDTPYS----------KRYLSIMSSFLEALSKRPDGRAIRGSLEA 500 (843)
T ss_pred ccccccchHHHHHHHHHhcCccccceEEEEEEEEecCChHH----------HHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 3688999999999999999999999999854332 3577888888887776433 346789999
Q ss_pred HHHHHHHHHhhhcccCCCC--hHHHHHHHHHHHHHhh----ccCCCcccCCCCcceEEEeeccCceeeccCCCCcEEEEE
Q 000157 1666 EFDFFDKVTNISGALYPLP--KEERRAGIRRELEKIE----MAGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMITF 1739 (2015)
Q Consensus 1666 E~~f~dkLt~ISg~lk~~~--K~erk~~i~eeL~ki~----~~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~ltF 1739 (2015)
|..|+++|..|...++... +.+|.+.++.-|..-. +...++.+|++|++.|+||.++.+.+|+| +..|++++|
T Consensus 501 Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~~~~l~~~~~i~lpldp~v~i~~Iip~t~~~FkS-sl~Pl~l~f 579 (843)
T KOG0906|consen 501 QQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHKHMNLLDVRLIALPLDPDVLIKGIIPDTASLFKS-SLMPLKLTF 579 (843)
T ss_pred HHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhcccccccccceeeccCCCCCceEeeecCchhhhhhh-ccCceeEEE
Confidence 9999999999988887542 1223333333333221 23367899999999999999999999998 789999999
Q ss_pred EeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhhc
Q 000157 1740 NVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGE 1819 (2015)
Q Consensus 1740 ~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk 1819 (2015)
++.++.| .|.+|||+|||||||||++|+|++||.+++++++|++++||+|+|||++.|++||||+-. +..|..
T Consensus 580 kt~~g~g------~y~vIFK~GDDLrQDqlV~Qii~lMd~LLkkenlDLkLtpYkVLatg~~eG~vefI~s~~-la~Ils 652 (843)
T KOG0906|consen 580 KTDDGGG------KYPVIFKKGDDLRQDQLVLQIIRLMDRLLKKENLDLKLTPYKVLATGPKEGFVEFIPSKP-LARILS 652 (843)
T ss_pred EecCCCC------ceeEEEecCcchhHHHHHHHHHHHHHHHhccccccccceeeEEeccCCCcccEEeecCCc-HHHHHH
Confidence 9987544 489999999999999999999999999999999999999999999999999999999654 445543
Q ss_pred cCCCcHHHHHHHhhCCC----CChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccCCCC
Q 000157 1820 TTDGGLYEIFQQDFGPV----GSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGR 1895 (2015)
Q Consensus 1820 ~~~~~L~eyF~~~~g~~----~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pgg 1895 (2015)
+ .+++.+|+++.+.+. +.. .++++||++||||||||||||||||||+||+|+++|||+||||||||||.+||+
T Consensus 653 ~-~~~I~~ylke~~p~e~ap~gi~--~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP 729 (843)
T KOG0906|consen 653 E-YHSILMYLKEDRPDENAPFGIS--PEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKP 729 (843)
T ss_pred H-HHHHHHHHHhhCCCcCCCCCCC--hhHHHHHHHhhccceeeeeeecccCCCcCceEEccCCcEEEEeeeeeccCCCCC
Confidence 3 345888988754332 222 368999999999999999999999999999999999999999999999999975
Q ss_pred CccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCC--CCchHHHHHHh
Q 000157 1896 NMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFS--RGDPIGNLRKR 1973 (2015)
Q Consensus 1896 n~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~--~~~~I~~Lr~R 1973 (2015)
-++|+||++|||++| ||.+|+.|++|+..|..||++||+|+++|+|||++|++++||+|. ..++|.++++|
T Consensus 730 ----~pp~MkL~kemve~m---gg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~I~kvqeR 802 (843)
T KOG0906|consen 730 ----FPPPMKLAKEMVEGM---GGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKAILKVQER 802 (843)
T ss_pred ----CCCccccCHHHHHHh---cccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchhhHHHHHH
Confidence 377999999999998 778999999999999999999999999999999999999999986 34689999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1974 FHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1974 F~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
|+++|||++|.+||+++|++|.++..+.+-|.++++.|
T Consensus 803 frLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aq 840 (843)
T KOG0906|consen 803 FRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQ 840 (843)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 4
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-95 Score=892.52 Aligned_cols=494 Identities=27% Similarity=0.431 Sum_probs=445.4
Q ss_pred hhhHHHHHHHHhChhhhccCCCchhhccccC-chhc--hHHHHHhCCCCCCCCHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 000157 1493 SLKAEVTQLVQLHILDIRCIPEALPYFVTPK-AVDE--DSALLQQLPHWAACSITQALEFLTPAYKGHPRVMAYILRVLE 1569 (2015)
Q Consensus 1493 ~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~-~~~e--~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~p~VRqYAVr~Le 1569 (2015)
.|..|.++++|.+|+||.+.|+|||++|.+. +|++ ....+.+|..|+|+.|.+|||||.|.|+ |.+||+.||.+|.
T Consensus 837 ~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfP-DqeVR~~AVqwi~ 915 (1639)
T KOG0905|consen 837 TLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFP-DQEVRAHAVQWIA 915 (1639)
T ss_pred ccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 5788999999999999999999999999753 3443 3456677889999999999999999999 7999999999999
Q ss_pred cCCChhHHhhHHHHHHHhccC---ChhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccccccccchHHHHHHH
Q 000157 1570 SYPPERVTFFMPQLVQALRYD---DERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPM 1646 (2015)
Q Consensus 1570 ~~~dd~L~~YLpQLVQALRyE---~~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~k~~rf~~~L~~ 1646 (2015)
++++|+|..|||||||||||| .+.++ +||++||..|.+|||.+||.|+--..+.. -..+|+.+|.+
T Consensus 916 ~ls~DeL~d~LPQlVQALK~E~yl~S~Lv-~FLL~rsl~sl~~ah~lYWlLk~~l~d~q----------fs~rYq~ll~a 984 (1639)
T KOG0905|consen 916 RLSNDELLDYLPQLVQALKFELYLKSALV-QFLLSRSLVSLQFAHELYWLLKDALDDSQ----------FSLRYQNLLAA 984 (1639)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhccCHHH-HHHHHHHhcchHHHHHHHHHHhhccccce----------eehHHHHHHHH
Confidence 999999999999999999987 45554 79999999999999999999996544211 12456555544
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHhh---ccCCCcccCCCCcceEEEeeccC
Q 000157 1647 VRQRIIDGFNPKALDLFQREFDFFDKVTNISGALYPLPKEERRAGIRRELEKIE---MAGEDLYLPTAPNKLVRGIRVDS 1723 (2015)
Q Consensus 1647 l~~~il~~~s~~~~~~~~rE~~f~dkLt~ISg~lk~~~K~erk~~i~eeL~ki~---~~~~~v~LP~nP~~~V~gI~~es 1723 (2015)
++..+++..++.+.+|.+++++|.+|+..+|..+...|...++..|..++ .+...+.||+.|...|+||+++.
T Consensus 985 ----Ll~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~ff~~n~tcrLPL~Pal~vkGv~i~~ 1060 (1639)
T KOG0905|consen 985 ----LLDCCGKNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSFFLQNNTCRLPLCPALDVKGVRIRE 1060 (1639)
T ss_pred ----HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHhCCceecccCchheeccccccc
Confidence 45566788899999999999999999999998877788888888887764 23346899999999999999999
Q ss_pred ceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCc
Q 000157 1724 GIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKG 1803 (2015)
Q Consensus 1724 ~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~G 1803 (2015)
|..|.| ...|++|+|.+.|+.|+. +++|||+|||||||||+||||++||+||.++|||++|.+|+|+|||.+.|
T Consensus 1061 CSyFnS-NA~PLKitFvnadp~gen-----i~iIfK~gDDLRQDml~lQmI~iMdkIWl~egLDlrMViFrc~stG~~rg 1134 (1639)
T KOG0905|consen 1061 CSYFNS-NALPLKITFVNADPLGEN-----ISIIFKCGDDLRQDMLVLQMIRIMDKIWLQEGLDLRMVIFRCLSTGYDRG 1134 (1639)
T ss_pred cccccC-CCcceEEEEecCCCcccc-----ceeeeecCchHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeeccccccc
Confidence 999988 679999999999999965 68999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCchhhhhhhcc-------CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc
Q 000157 1804 IIEVVPNTRSRSQMGET-------TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN 1876 (2015)
Q Consensus 1804 lIE~Vpns~S~~qlgk~-------~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~ 1876 (2015)
|+|+|||+.|+.+|..+ ++..|.+||.+. +++..+|++|.+||++|||||||+||||||+||||||||+++
T Consensus 1135 MvElVp~a~TLrKIQve~GltGsfkD~pla~WL~Kh--Np~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~ 1212 (1639)
T KOG0905|consen 1135 MVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKH--NPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTK 1212 (1639)
T ss_pred ceeecccHHHHHHHHHHhccccccccchHHHHHHhc--CCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEec
Confidence 99999999999988543 577889999875 345678999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccC-CCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhh
Q 000157 1877 IGRLVHIDFGFILETS-PGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLD 1955 (2015)
Q Consensus 1877 ~GhlfHIDFGfIfg~~-Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~ 1955 (2015)
+||+||||||-++|.+ ..|++|++|+||.||.||.+|+++ |+..+..|+.|+++||+||+++|+|.++++||+.+|+.
T Consensus 1213 sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINg-G~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~ 1291 (1639)
T KOG0905|consen 1213 SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVING-GDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMAC 1291 (1639)
T ss_pred cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcC-CCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999985 577899999999999999999985 77889999999999999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1956 SGLPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1956 SgLPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
+|||+++..++++++++.++|..||.||..+|.++|++|+++|.|++--.++.+.|
T Consensus 1292 agiPeln~i~dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLAQ 1347 (1639)
T KOG0905|consen 1292 AGIPELNSIQDLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLAQ 1347 (1639)
T ss_pred cCCCCccchhhHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999986699999999999999999999999999999999999999999888765
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=2.2e-86 Score=779.84 Aligned_cols=342 Identities=28% Similarity=0.477 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHhhc---cCCCcccCCCCcceEEEeeccCceeeccCCCCcEEE
Q 000157 1661 DLFQREFDFFDKVTNISGALYPLPKEERRAGIRRELEKIEM---AGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMI 1737 (2015)
Q Consensus 1661 ~~~~rE~~f~dkLt~ISg~lk~~~K~erk~~i~eeL~ki~~---~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~l 1737 (2015)
+.+.+|.++.++|++|++.+|+.++++|++.++++|++++. .+.+++||+||++.|.||++++|++|+| +++|+++
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~~~r~~~l~~~L~~~~~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S-~~~Pl~l 80 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAPSARQGILREGLEEVKQFFSINGSCRLPLSPSLLVKGIVPRDCSYFNS-NAVPLKL 80 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhccCCCCCcCCCCCCeEEEEEEcCceEEecc-cCCCeEE
Confidence 56889999999999999999998888889999999998851 1357999999999999999999999999 7899999
Q ss_pred EEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhh
Q 000157 1738 TFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQM 1817 (2015)
Q Consensus 1738 tF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ql 1817 (2015)
+|++.|+.|+ .+.+|||+|||||||+++||+|++|++||+++|+|++|+||+|+|||+++|+||||||+.|+++|
T Consensus 81 ~f~~~d~~~~-----~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I 155 (354)
T cd00895 81 SFQNVDPLGE-----NIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKI 155 (354)
T ss_pred EEEecCCCCC-----eEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHH
Confidence 9999987664 48999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc-------CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1818 GET-------TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1818 gk~-------~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
.+. ++..+.+||.+. ++ ++..|++|++||++|||||||+|||||||||||||||||++||+||||||||||
T Consensus 156 ~~~~g~~g~~~~~~l~~~l~~~-~~-~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg 233 (354)
T cd00895 156 QVEHGVTGSFKDRPLADWLQKH-NP-TEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLG 233 (354)
T ss_pred HHHhCcCcccccchHHHHHHHh-CC-ChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcC
Confidence 643 234788999875 33 567899999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHH
Q 000157 1891 TSP-GRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGN 1969 (2015)
Q Consensus 1891 ~~P-ggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~ 1969 (2015)
..| +|+++||++|||||+||+++||+ |+.+|+.|++|+++|++||+++|+|++.|++||++|+++|+|||+..++|++
T Consensus 234 ~~~~~g~~~re~~PF~Lt~emv~vm~g-g~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~~i~~ 312 (354)
T cd00895 234 HAQMFGNIKRDRAPFVFTSDMAYVING-GDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLEDLKY 312 (354)
T ss_pred CCcccCCCCcCCCCccccHHHHHHhcC-CCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcchHHHH
Confidence 875 56689999999999999999973 6678999999999999999999999999999999999999999987789999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1970 LRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1970 Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
+++||+|++||+||++||.++|++|+++|+|++||.+|.+.|
T Consensus 313 l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 313 VYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999998865
No 6
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.3e-86 Score=774.75 Aligned_cols=304 Identities=58% Similarity=0.997 Sum_probs=291.0
Q ss_pred ccCCCCcceEEEeeccCceeeccCCCCcEEEEEEeecCCCCC------CCCCcceeEeeeCCchhhHHHHHHHHHHHHHH
Q 000157 1707 YLPTAPNKLVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQ------SNVMPQACIFKVGDDCRQDVLALQVISLLRDI 1780 (2015)
Q Consensus 1707 ~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~------~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I 1780 (2015)
|||+||++.|++|++++|++|+|++|+|++++|++.|+.|+. ....++.+|||+|||||||++++|+|++|++|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 899999999999999999999998899999999998876531 12357999999999999999999999999999
Q ss_pred HHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHH
Q 000157 1781 FEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASL 1860 (2015)
Q Consensus 1781 ~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tY 1860 (2015)
|+++|+|++++||+|+|||+++|+||||||+.|++++++...+++++||.++||++++..|++|++||++|||||||+||
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tY 160 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISY 160 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999998889999999999999999999999
Q ss_pred hhcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCC-ChhHHHHHHHHHHHHHHH
Q 000157 1861 LLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMK-SDTWNQFVSLCIKGYLAA 1939 (2015)
Q Consensus 1861 ILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~-Se~f~~F~~lCv~aflaL 1939 (2015)
|||||||||||||||.+||+||||||||||++|||+++||++|||||+||+++|| |.+ ++.|++|+++|++||+++
T Consensus 161 iLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mG---g~~~s~~f~~F~~~~~~~~~~l 237 (311)
T cd05167 161 LLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMG---GSMEATPFKWFVELCVRAFLAV 237 (311)
T ss_pred HhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhC---CCCcchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999989999999999999999995 344 788999999999999999
Q ss_pred HhchhHHHHHHHHHhhCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhhCcC
Q 000157 1940 RRYMDGIINTVLLMLDSGLPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQGIE 2014 (2015)
Q Consensus 1940 Rk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI~ 2014 (2015)
|+|++.|++++++|+++|+|||+ .++|++|++||+|++||+||+++|.++|++|+++|+|++||.||++|||||
T Consensus 238 R~~~~~il~l~~lm~~s~lp~~~-~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi~ 311 (311)
T cd05167 238 RPYMDEIVSLVELMLDSGLPCFR-GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQNGIP 311 (311)
T ss_pred HcCHHHHHHHHHHHHcCCchhhh-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC
Confidence 99999999999999999999997 789999999999999999999999999999999999999999999999997
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2e-83 Score=757.42 Aligned_cols=342 Identities=25% Similarity=0.453 Sum_probs=317.4
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHhhc--c-CCCcccCCCCcceEEEeeccCceeeccCCCCcEEE
Q 000157 1661 DLFQREFDFFDKVTNISGALYPLPKEERRAGIRRELEKIEM--A-GEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMI 1737 (2015)
Q Consensus 1661 ~~~~rE~~f~dkLt~ISg~lk~~~K~erk~~i~eeL~ki~~--~-~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~l 1737 (2015)
+.+.+|.+++++|..|+.++|+.++++|++.++++|+++.. + +.+++||+||++.|.||++++|++++| +++|+++
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~~~~~l~~~l~~~~~~~~~~~~~~lPl~P~~~i~~i~~~~~~v~~S-~~~Pl~l 80 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTRRKEVLKREASRLEDFFQDVVSCCLPLNPALRVKGIDADACSYFTS-NAAPLKI 80 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHhhhhccCCCCCccCCCCCeEEEEEecCccEEehh-hcCCCEE
Confidence 45789999999999999999999888888899999999863 2 357999999999999999999999999 6899999
Q ss_pred EEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhh
Q 000157 1738 TFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQM 1817 (2015)
Q Consensus 1738 tF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ql 1817 (2015)
+|++.|+.|+ .|.+|||+|||||||++++|+|++||+||+++|+|++++||+|+|||+++|+||||||+.|+++|
T Consensus 81 ~f~~~d~~~~-----~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I 155 (354)
T cd05177 81 SFINANPLAK-----NISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKI 155 (354)
T ss_pred EEEecCCCCC-----eEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHH
Confidence 9999886663 48999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccC-------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1818 GETT-------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1818 gk~~-------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
.+.. ++++.+||..++. .+..|.+|++||++|||||||+||||||||||||||||+++||+||||||||||
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg 233 (354)
T cd05177 156 HRESGLIGPLKENTIEKWFHMHNK--LKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLG 233 (354)
T ss_pred HHhhCCCcccchhhHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcC
Confidence 7542 4578999987643 357899999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHH
Q 000157 1891 TSPG-RNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGN 1969 (2015)
Q Consensus 1891 ~~Pg-gn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~ 1969 (2015)
.+|+ |+++||++|||||+||+++|+ +||.+++.|+.|+++|++||+++|+|++.|++++++|+++|+|||+..++|++
T Consensus 234 ~~~~~~~~~~E~~PF~LT~emv~~~~-~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~i~~ 312 (354)
T cd05177 234 HAQTFGSIKRDRAPFIFTSEMEYFIT-EGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQDLKY 312 (354)
T ss_pred CCccccCCCcCCCCeeccHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchHHHH
Confidence 9874 568899999999999999986 58889999999999999999999999999999999999999999987778999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1970 LRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1970 Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
+++||+|++||+||++||.++|++|+++|+|++.|.++.+.|
T Consensus 313 l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 313 VYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999998754
No 8
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=6.5e-83 Score=750.31 Aligned_cols=343 Identities=27% Similarity=0.463 Sum_probs=312.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHhh--ccCCCcccCCCCcceEEEeeccCceeeccCCCCcEEE
Q 000157 1660 LDLFQREFDFFDKVTNISGALYPLPKEERRAGIRRELEKIE--MAGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMI 1737 (2015)
Q Consensus 1660 ~~~~~rE~~f~dkLt~ISg~lk~~~K~erk~~i~eeL~ki~--~~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~l 1737 (2015)
|+.+.+|.+++++|.+|+.++|..+.+.|+..+++++++++ +.+..++||+||++.|.++.+++|++|.| +++|+++
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~~~l~~~~~~l~~~~~~~~~~lPl~p~~~~~~~~~~~c~v~~S-~~~Pl~l 79 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSSTRQVVLQEGMERVQSFFQKNKCRLPLSPSLVAKELNIKVCSFFSS-NAVPLKI 79 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhcCCCCCCCCCCcceeEccEehheeEEecc-cCCceEE
Confidence 35678999999999999999998777777778888888876 23357999999999999999999999988 8999999
Q ss_pred EEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhh
Q 000157 1738 TFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQM 1817 (2015)
Q Consensus 1738 tF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ql 1817 (2015)
+|++.|+.|+ .|.+|||+|||||||+++||+|++||+||+++|+|++++||+|+|||+++|+||||||+.|++++
T Consensus 80 ~f~~~d~~g~-----~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I 154 (353)
T cd05176 80 ALVNADPLGE-----EINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKI 154 (353)
T ss_pred EEEccCCCCC-----EEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHH
Confidence 9999987774 48999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccC-------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1818 GETT-------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1818 gk~~-------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
.+.. +..+.+|+++ +++ ++..|.+|++||++|||||||+||||||||||||||||+++||+||||||||||
T Consensus 155 ~~~~~~~~~~~~~~l~~~l~~-~~~-~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg 232 (353)
T cd05176 155 QVEYGVTGSFKDKPLAEWLRK-YNP-AEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLG 232 (353)
T ss_pred HHHhCcCCccccchHHHHHHH-hCC-ChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcC
Confidence 6532 3457777665 555 457899999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHH
Q 000157 1891 TSP-GRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGN 1969 (2015)
Q Consensus 1891 ~~P-ggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~ 1969 (2015)
.+| +|+++||++|||||+||+++||+ |..+++.|++|+++|++||+++|+|+++|+++|++|+++|+|||+..++|++
T Consensus 233 ~~~~~g~~~~e~~PFkLT~emv~~mgG-~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~i~~ 311 (353)
T cd05176 233 HAQMFGSFKRDRAPFVLTSDMAYVING-GEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQDLKY 311 (353)
T ss_pred CCccccCCCCCCCCeeecHHHHHHhcC-CCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchHHHH
Confidence 987 45678999999999999999963 2334678999999999999999999999999999999999999987779999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1970 LRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1970 Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
+++||+|++||+||..||.++|++|.++|+|+++|.+|.+.|
T Consensus 312 l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 312 VYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999864
No 9
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.4e-81 Score=739.29 Aligned_cols=341 Identities=27% Similarity=0.456 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCh------HHHHHHHHHHHHHhh---ccCCCcccCCCCcceEEEeeccCceeeccCCC
Q 000157 1662 LFQREFDFFDKVTNISGALYPLPK------EERRAGIRRELEKIE---MAGEDLYLPTAPNKLVRGIRVDSGIPLQSAAK 1732 (2015)
Q Consensus 1662 ~~~rE~~f~dkLt~ISg~lk~~~K------~erk~~i~eeL~ki~---~~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak 1732 (2015)
.+.+|.++.++|..|+..+|..+. .++.+.+++.|+.+. ++ .+++||+||++.|.+|++++|++|+| ++
T Consensus 3 ~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~lPl~P~~~~~~i~~~~~~v~~S-~~ 80 (365)
T cd00894 3 DFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLP-ESFRVPYDPGLRAGALVIEKCKVMAS-KK 80 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhccCC-CCCCCCCCCceEEEEEEcCceEEEcc-cC
Confidence 578999999999999999987642 233456677666654 44 68999999999999999999999998 79
Q ss_pred CcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCch
Q 000157 1733 VPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTR 1812 (2015)
Q Consensus 1733 ~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~ 1812 (2015)
+|++++|++.|+.+.. ..++.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||||+.
T Consensus 81 ~Pl~l~f~~~d~~~~~--~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~ 158 (365)
T cd00894 81 KPLWLEFKCADPTALS--NETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDAT 158 (365)
T ss_pred CceEEEEECCCCCccC--CCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCch
Confidence 9999999998754321 13589999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccC--------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEe
Q 000157 1813 SRSQMGETT--------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHID 1884 (2015)
Q Consensus 1813 S~~qlgk~~--------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHID 1884 (2015)
|++++.+.. ++.+++||.+++. .++.|.+|++||++|||||||+|||||||||||||||||++||+||||
T Consensus 159 tl~~I~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHID 236 (365)
T cd00894 159 TIAKIQQSTVGNTGAFKDEVLSHWLKEKCP--IEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHID 236 (365)
T ss_pred hHHHHHHhcccccccccchhHHHHHHHhCC--CHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEEe
Confidence 999986542 3458889988753 357899999999999999999999999999999999999999999999
Q ss_pred cccccccCCC-CCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCC
Q 000157 1885 FGFILETSPG-RNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSR 1963 (2015)
Q Consensus 1885 FGfIfg~~Pg-gn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~ 1963 (2015)
||||||..|+ ++++||++|||||+||+++||++||.+|+.|+.|+++|++||+++|+|++.|++||++|+++|+|||+.
T Consensus 237 FG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~ 316 (365)
T cd00894 237 FGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 316 (365)
T ss_pred eHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc
Confidence 9999999874 347899999999999999999889999999999999999999999999999999999999999999987
Q ss_pred CchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHH
Q 000157 1964 GDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQY 2008 (2015)
Q Consensus 1964 ~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~ 2008 (2015)
.++|++||+||++++||+||+++|.++|++|+++|.|..||.|..
T Consensus 317 ~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h 361 (365)
T cd00894 317 KEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLH 361 (365)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHH
Confidence 789999999999999999999999999999998755555555543
No 10
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=5.4e-81 Score=740.09 Aligned_cols=340 Identities=32% Similarity=0.535 Sum_probs=315.5
Q ss_pred HHHHHHHHHHHHHHhhhcccCCC-ChHHHHHHHHHHHHHhhc-cCCCcccCCCCcceEEEeeccCceeeccCCCCcEEEE
Q 000157 1661 DLFQREFDFFDKVTNISGALYPL-PKEERRAGIRRELEKIEM-AGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMIT 1738 (2015)
Q Consensus 1661 ~~~~rE~~f~dkLt~ISg~lk~~-~K~erk~~i~eeL~ki~~-~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~lt 1738 (2015)
+.+.+|++|+++|++|+.++|+. ++++|++.++++|++++. .+.+++||+||+..|.+|++++|++++| +++|++++
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~~~~~~~~~~l~~~L~~~~~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S-~~~P~~l~ 80 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKREKSKSQRKELLREELKKLENNLPQEFTLPLDPRLEIKGLIIEKCKVMDS-KKKPLWLV 80 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhhccCCCCccCCCCCceEEEEEeccceEEecc-ccCCcEEE
Confidence 46789999999999999999998 889999999999999982 2368999999999999999999999998 79999999
Q ss_pred EEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhh
Q 000157 1739 FNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMG 1818 (2015)
Q Consensus 1739 F~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlg 1818 (2015)
|++.|+.|+ .|.+|||.|||||||++++|+|++|++||+++|+|++++||+|+|||+++|+||||||+.|++++.
T Consensus 81 f~~~d~~g~-----~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~ 155 (352)
T cd00891 81 FKNADPSGE-----PIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQ 155 (352)
T ss_pred EEecCCCCC-----EEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHH
Confidence 999887664 489999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccC--------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1819 ETT--------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1819 k~~--------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
++. +..+.+||.+.++. ...|.+|++||++|||||||+|||||||||||||||||++||+||||||||||
T Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg 233 (352)
T cd00891 156 KKAGGVGGAFKDNPLMNWLKKKNKG--EEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLG 233 (352)
T ss_pred HhcCccccccccchHHHHHHHhCCC--HHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhc
Confidence 643 23688999887653 45899999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHH
Q 000157 1891 TSPG-RNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGN 1969 (2015)
Q Consensus 1891 ~~Pg-gn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~ 1969 (2015)
..|+ ++++||++|||||+||+++|| |.+++.|+.|+++|+++|+++|+|++.|++++++|+++|+|||+..++|++
T Consensus 234 ~~~~~~~~~~E~~PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~~~i~~ 310 (352)
T cd00891 234 NFKKKFGIKRERAPFVLTPDMAYVMG---GGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSIEDIEY 310 (352)
T ss_pred cCCccCCCCCCCCCeeecHHHHHHhC---CCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcHHHHHH
Confidence 8764 356899999999999999995 445788999999999999999999999999999999999999987789999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1970 LRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1970 Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
+++||++++||+||+++|.++|++|+++|+|++||.+|.+.+
T Consensus 311 l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 311 LRDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 999999999999999999999999999999999999998864
No 11
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.9e-80 Score=734.65 Aligned_cols=342 Identities=28% Similarity=0.469 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHhhc--cCCCcccCCCCcceEEEeeccCceeeccCCCCcEEEE
Q 000157 1661 DLFQREFDFFDKVTNISGALYPLPKEERRAGIRRELEKIEM--AGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMIT 1738 (2015)
Q Consensus 1661 ~~~~rE~~f~dkLt~ISg~lk~~~K~erk~~i~eeL~ki~~--~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~lt 1738 (2015)
+.+.+|++|+++|++|+..+|+.++++|++.++++|++++. .+.+++||+||++.|.+|++++|+++.| +++|++++
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~~~~~~~l~~~l~~~~~~~~~~~~~lP~~p~~~~~~i~~~~~~v~~S-~~~P~~l~ 80 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASESARQHVLRTGLGRVDSFLLQNKCRLPLNPALDVKGIDVRECSYFNS-NALPLKIS 80 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhccCCCCccCCCCceEEEeEEcCceEEecc-ccCceEEE
Confidence 35789999999999999999999988999999999998863 2358999999999999999999999998 78999999
Q ss_pred EEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhh
Q 000157 1739 FNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMG 1818 (2015)
Q Consensus 1739 F~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlg 1818 (2015)
|++.|+.|+ .|.+|||.|||||||+++||+|++||+||+++|+|++++||+|+|||+++|+||||||+.|++++.
T Consensus 81 f~~~d~~g~-----~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~ 155 (353)
T cd05166 81 FVNADPMGE-----NISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQ 155 (353)
T ss_pred EEecCCCCC-----EEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHH
Confidence 999887674 489999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccC-------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEeccccccc
Q 000157 1819 ETT-------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1819 k~~-------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~ 1891 (2015)
+.. +..+++||.+.+ +++..|.+|++||++|||||||+|||||||||||||||||++||+||||||||||.
T Consensus 156 ~~~g~~~~~~~~~l~~~l~~~~--~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~ 233 (353)
T cd05166 156 VEEGLTGSFKDRPIAKWLMKHN--PSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGH 233 (353)
T ss_pred HHhCccccccchhHHHHHHHhC--CChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhccc
Confidence 542 346788888754 34678999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHHH
Q 000157 1892 SP-GRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGNL 1970 (2015)
Q Consensus 1892 ~P-ggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~L 1970 (2015)
.| +++++||++|||||+||+++||+ |+.+++.|+.|+++|++||+++|+|++.|++++++|+++|+|||+..++|+++
T Consensus 234 ~~~~~~~~~E~~PFrLT~emv~~~gg-g~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l 312 (353)
T cd05166 234 AQMFGGFKRDRAPFVFTSDMAYVING-GDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYV 312 (353)
T ss_pred ccccccCCCCCCCccccHHHHHHhcC-CCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHH
Confidence 75 45678999999999999999984 55678999999999999999999999999999999999999999877899999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhh
Q 000157 1971 RKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQ 2011 (2015)
Q Consensus 1971 r~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~n 2011 (2015)
|+||+|++||+||++||.++|++|+++|+|++.|.++.+.|
T Consensus 313 ~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 313 RDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998764
No 12
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.5e-80 Score=729.53 Aligned_cols=344 Identities=28% Similarity=0.470 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCChH-HHH---HHHHHHHHHhhcc--CCCcccCCCCcceEEEeeccCceeeccCCCCcE
Q 000157 1662 LFQREFDFFDKVTNISGALYPLPKE-ERR---AGIRRELEKIEMA--GEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPI 1735 (2015)
Q Consensus 1662 ~~~rE~~f~dkLt~ISg~lk~~~K~-erk---~~i~eeL~ki~~~--~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl 1735 (2015)
.+.||.+++++|+.|+..+|..+++ .++ +.+++.|+...+. .++++||+||++.|.+|.+++|++|.| +++|+
T Consensus 3 ~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S-~~~Pl 81 (366)
T cd05175 3 HLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFTSPLNPAHQLGNLRLEECRIMSS-AKRPL 81 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCchhhhccCCCCCCCCCceEEEEEEeccceeech-hcCCe
Confidence 4679999999999999999865422 222 2344445433221 147999999999999999999999977 89999
Q ss_pred EEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhh
Q 000157 1736 MITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRS 1815 (2015)
Q Consensus 1736 ~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ 1815 (2015)
+++|++.|+.++.. ..+|.+|||+|||||||++++|+|++|++||+++|+|++|+||+|+|||+++|+||||||+.|++
T Consensus 82 ~l~f~~~d~~~~~~-~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~ 160 (366)
T cd05175 82 WLNWENPDIMSELL-FQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIM 160 (366)
T ss_pred EEEEEcCCcccccc-cCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhHH
Confidence 99999987544321 13589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC---------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecc
Q 000157 1816 QMGETT---------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFG 1886 (2015)
Q Consensus 1816 qlgk~~---------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFG 1886 (2015)
+|.+.. ...+++||.+.++ ++.|++|++||++|||||||+|||||||||||||||||++||+||||||
T Consensus 161 ~I~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HIDFG 237 (366)
T cd05175 161 QIQCKGGLKGALQFNSHTLHQWLKDKNK---GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFG 237 (366)
T ss_pred HHHhccccccccccCchhHHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEEehH
Confidence 886531 2357888887543 4679999999999999999999999999999999999999999999999
Q ss_pred cccccCCCC-CccCCCCCccCcHHHHHhhcCCC--CCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCC
Q 000157 1887 FILETSPGR-NMRFESAHFKLSHEMTQLLDPSG--VMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSR 1963 (2015)
Q Consensus 1887 fIfg~~Pgg-n~~fE~vPFKLT~eMv~vmg~~G--g~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~ 1963 (2015)
||||.+||. +++||++|||||+||+++||+++ +.+++.|++|+++|++||+++|+|++.|++||++|+++|+|||+.
T Consensus 238 ~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~ 317 (366)
T cd05175 238 HFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS 317 (366)
T ss_pred HhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 999999963 36789999999999999996321 246899999999999999999999999999999999999999987
Q ss_pred CchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHhh
Q 000157 1964 GDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYN-KWTTAGYDLIQYLQ 2010 (2015)
Q Consensus 1964 ~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~-s~~T~~YD~~Q~~~ 2010 (2015)
.+++++||+||++++||+||++||.++|++|++ +|+|+.-..++.+.
T Consensus 318 ~~~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~ 365 (366)
T cd05175 318 FDDIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIK 365 (366)
T ss_pred ccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhc
Confidence 789999999999999999999999999999986 89999544555443
No 13
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=8e-80 Score=729.42 Aligned_cols=339 Identities=29% Similarity=0.490 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCCC-----hHHHHHHHHHHHHHhhcc--CCCcccCCCCcceEEEeeccCceeeccCCCCc
Q 000157 1662 LFQREFDFFDKVTNISGALYPLP-----KEERRAGIRRELEKIEMA--GEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVP 1734 (2015)
Q Consensus 1662 ~~~rE~~f~dkLt~ISg~lk~~~-----K~erk~~i~eeL~ki~~~--~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~P 1734 (2015)
.+.+|.+++++|++|+..+|..+ +++|++.+++.|+..... +++++||+||++.|.+|++++|++|+| +++|
T Consensus 3 ~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPl~P~~~v~~i~~~~~~v~~S-k~~P 81 (366)
T cd05165 3 DLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLANLDLLQSFQSPLNPSLKLGELRIEKCKVMDS-KKKP 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccchhcccccCCCCCCCceeEeeeecCceEEehh-hcCC
Confidence 57799999999999999998753 456677888888765431 257999999999999999999999998 7899
Q ss_pred EEEEEEeecC---CCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCc
Q 000157 1735 IMITFNVVDR---DGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNT 1811 (2015)
Q Consensus 1735 l~ltF~~~d~---~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns 1811 (2015)
++++|++.|+ .| ..|.+|||+|||||||+++||+|++||+||+++|+|++|+||+|+|||+++|+||||||+
T Consensus 82 ~~l~f~~~d~~~~~g-----~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns 156 (366)
T cd05165 82 LWLVFENADPTALSN-----ENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDS 156 (366)
T ss_pred cEEEEEccCcccccC-----CceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCc
Confidence 9999999885 24 358999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCC---------CcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEE
Q 000157 1812 RSRSQMGETTD---------GGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVH 1882 (2015)
Q Consensus 1812 ~S~~qlgk~~~---------~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfH 1882 (2015)
.|+++|.+... +.+++||.+++. +...|.+|++||++|||||||+|||||||||||||||||++||+||
T Consensus 157 ~tl~~I~~~~~~~~~~~f~~~~l~~wl~~~~~--~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~H 234 (366)
T cd05165 157 TTIANIQQETGGNATAAFKKEALLHWLKEKNP--TEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFH 234 (366)
T ss_pred hhHHHHHHhcccccccccCcHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEE
Confidence 99999876432 257888887643 3468999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCC-CccCCCCCccCcHHHHHhhcCCCC-CCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCC
Q 000157 1883 IDFGFILETSPGR-NMRFESAHFKLSHEMTQLLDPSGV-MKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPC 1960 (2015)
Q Consensus 1883 IDFGfIfg~~Pgg-n~~fE~vPFKLT~eMv~vmg~~Gg-~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPc 1960 (2015)
||||||||.+|+. +++||++|||||+||+++||++|+ .+|+.|+.|+++|++||+++|+|++.|++++++|+++|+||
T Consensus 235 IDFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~ 314 (366)
T cd05165 235 IDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPE 314 (366)
T ss_pred EehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcc
Confidence 9999999998753 357999999999999999986543 58999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh-ChhHHHHHHHHH
Q 000157 1961 FSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYN-KWTTAGYDLIQY 2008 (2015)
Q Consensus 1961 f~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~-s~~T~~YD~~Q~ 2008 (2015)
|+..++|++||+||++++||+||.+||.++|++|++ +|+|+.-+.+|.
T Consensus 315 ~~~~~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~ 363 (366)
T cd05165 315 LTSKEDIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHL 363 (366)
T ss_pred cCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHH
Confidence 987789999999999999999999999999999996 799855444443
No 14
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=5.2e-79 Score=721.68 Aligned_cols=340 Identities=27% Similarity=0.451 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCC----ChHHHHHHHHHHHHHhhcc--CCCcccCCCCcceEEEeeccCceeeccCCCCcE
Q 000157 1662 LFQREFDFFDKVTNISGALYPL----PKEERRAGIRRELEKIEMA--GEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPI 1735 (2015)
Q Consensus 1662 ~~~rE~~f~dkLt~ISg~lk~~----~K~erk~~i~eeL~ki~~~--~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl 1735 (2015)
.+.+|.+++++|..++..+|.. ++++|++.+++.|++-... -.+++||+||++.|.+|++++|++|+| +++|+
T Consensus 3 ~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S-~~~Pl 81 (362)
T cd05173 3 VLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREALSDLQSPLNPSIILSELNVEKCKYMDS-KMKPL 81 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcccCCCCCCCCceEEEEEEcCceEEecc-cCCCe
Confidence 4679999999999999999864 3456677788777665321 147999999999999999999999999 78899
Q ss_pred EEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhh
Q 000157 1736 MITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRS 1815 (2015)
Q Consensus 1736 ~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ 1815 (2015)
+|+|++.+.+|+ .|.+|||+|||||||+++||+|++||+||+++|+|++|+||+|+|||+++|+||||||+.|++
T Consensus 82 ~l~f~~~~~~g~-----~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~ 156 (362)
T cd05173 82 WIVYNNKLFGGD-----SLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIA 156 (362)
T ss_pred EEEEeecCCCCC-----EEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHH
Confidence 999998876664 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc----------CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEec
Q 000157 1816 QMGET----------TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDF 1885 (2015)
Q Consensus 1816 qlgk~----------~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDF 1885 (2015)
++... ....+++||.+.. + .+.|++|++||++|||||||+|||||||||||||||||.+||+|||||
T Consensus 157 ~I~~~~~~~~~~~~f~~~~l~~~l~~~~-~--~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDF 233 (362)
T cd05173 157 DIQLNSSNVAAAAAFNKDALLNWLKEYN-S--GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDF 233 (362)
T ss_pred HHHHhccccchhcccChhHHHHHHHhcC-C--cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeh
Confidence 88643 1235788887642 2 357999999999999999999999999999999999999999999999
Q ss_pred ccccccCCC-CCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCC
Q 000157 1886 GFILETSPG-RNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRG 1964 (2015)
Q Consensus 1886 GfIfg~~Pg-gn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~ 1964 (2015)
|||||..|+ ..++||++|||||+||+++||.+++.+++.|+.|+++|++||+++|+|++.|++++++|+++|+|||+..
T Consensus 234 G~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~ 313 (362)
T cd05173 234 GHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSV 313 (362)
T ss_pred HHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccch
Confidence 999998663 3367899999999999999973222268899999999999999999999999999999999999999877
Q ss_pred chHHHHHHhcCCCCCHHHHHHHHHHHHHHhh-hChhHHHHHHHHHhh
Q 000157 1965 DPIGNLRKRFHPEMSDREAAIFMRNVCTDAY-NKWTTAGYDLIQYLQ 2010 (2015)
Q Consensus 1965 ~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~-~s~~T~~YD~~Q~~~ 2010 (2015)
++|++||+||++++||+||+++|+++|++|+ ++|+|++-+.++.+.
T Consensus 314 ~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~ 360 (362)
T cd05173 314 KDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVR 360 (362)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8999999999999999999999999999999 499999999998874
No 15
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=4.7e-79 Score=720.24 Aligned_cols=340 Identities=25% Similarity=0.415 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCh----HHHHHHHHHHHHHhhc--cCCCcccCCCCcceEEEeeccCceeeccCCCCcE
Q 000157 1662 LFQREFDFFDKVTNISGALYPLPK----EERRAGIRRELEKIEM--AGEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPI 1735 (2015)
Q Consensus 1662 ~~~rE~~f~dkLt~ISg~lk~~~K----~erk~~i~eeL~ki~~--~~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl 1735 (2015)
.+.||.+++++|..|+..+|...+ +.+.+.+++.|++-.. ....++||+||++.+.+|.+++|++|+| +++|+
T Consensus 3 ~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lPl~p~~~~~~~~~~~~~v~~S-k~~Pl 81 (361)
T cd05174 3 VLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEALSHLQSPLSPSIILCEVCVDQCTFMDS-KMKPL 81 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhhccCCCCCCCceEEEEEEcCcEEEEec-cCCce
Confidence 567999999999999999986532 2334455555444321 1136899999999999999999999998 78999
Q ss_pred EEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhh
Q 000157 1736 MITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRS 1815 (2015)
Q Consensus 1736 ~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~ 1815 (2015)
+++|++.|++|+ .|.+|||+|||||||+++||+|++||+||+++|+|++|+||+|+|||+++|+||||||+.|++
T Consensus 82 ~l~f~~~~~~g~-----~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~ 156 (361)
T cd05174 82 WIMYKNEEAGGG-----SVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIA 156 (361)
T ss_pred EEEEeecCCCCC-----EEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHH
Confidence 999999887674 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC----------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEec
Q 000157 1816 QMGETT----------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDF 1885 (2015)
Q Consensus 1816 qlgk~~----------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDF 1885 (2015)
++.+.. ...+++||.+++. ...|++|++||++|||||||+||||||||||||||||+++||+|||||
T Consensus 157 ~I~~~~~~~~~~~~f~~~~l~~~l~~~~~---~~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HIDF 233 (361)
T cd05174 157 NIQLNKSNMAATAAFNKDALLNWLKSKNP---GDALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDF 233 (361)
T ss_pred HHHHhhcccchhccccchHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEeh
Confidence 986532 2357888887652 357899999999999999999999999999999999999999999999
Q ss_pred ccccccCCC-CCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCC
Q 000157 1886 GFILETSPG-RNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRG 1964 (2015)
Q Consensus 1886 GfIfg~~Pg-gn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~ 1964 (2015)
|||||..|+ ++++||++|||||+||+++||++|+.+|+.|+.|+++|++||+++|+|++.|+++|++|+++|+|||+..
T Consensus 234 G~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~ 313 (361)
T cd05174 234 GHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCS 313 (361)
T ss_pred HHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCch
Confidence 999998664 2367899999999999999986567789999999999999999999999999999999999999999877
Q ss_pred chHHHHHHhcCCCCCHHHHHHHHHHHHHHhh-hChhHHHHHHHHHhh
Q 000157 1965 DPIGNLRKRFHPEMSDREAAIFMRNVCTDAY-NKWTTAGYDLIQYLQ 2010 (2015)
Q Consensus 1965 ~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~-~s~~T~~YD~~Q~~~ 2010 (2015)
++|++||+||+|++||+||+++|.++|.+|. ++|+|++-+.++.+.
T Consensus 314 ~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a 360 (361)
T cd05174 314 KDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVS 360 (361)
T ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhc
Confidence 8999999999999999999999999999999 699999999888653
No 16
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=2.7e-78 Score=716.18 Aligned_cols=338 Identities=29% Similarity=0.476 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHHHHhhhcccCCC--ChHHHHHHHHHHHHHhhcc----CCCcccCCCCcceEEEeeccCceeeccCCCCc
Q 000157 1661 DLFQREFDFFDKVTNISGALYPL--PKEERRAGIRRELEKIEMA----GEDLYLPTAPNKLVRGIRVDSGIPLQSAAKVP 1734 (2015)
Q Consensus 1661 ~~~~rE~~f~dkLt~ISg~lk~~--~K~erk~~i~eeL~ki~~~----~~~v~LP~nP~~~V~gI~~es~~vl~Ssak~P 1734 (2015)
+.+.+|.+|+++|++|++.++.. ++++|++.+++.|++++.. +.+++||+||+..|.+|++++|++++| +++|
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S-~~~P 80 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKS-ALMP 80 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEecc-ccCc
Confidence 35789999999999999999987 3567888999999987642 468999999999999999999999998 8999
Q ss_pred EEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhh
Q 000157 1735 IMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSR 1814 (2015)
Q Consensus 1735 l~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~ 1814 (2015)
++++|++.|+.+ .+.|.+|||+|||||||+++||+|++||+||+++++|++++||+|+|||+++|+||||| +.|+
T Consensus 81 ~~l~f~~~dg~~----~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl 155 (350)
T cd00896 81 LKLTFKTEKGNE----EGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIP-SVTL 155 (350)
T ss_pred eEEEEEeCCCCC----CceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEe-cccH
Confidence 999999987421 13589999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhccCCCcHHHHHHHhhCCCCChH--HHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccC
Q 000157 1815 SQMGETTDGGLYEIFQQDFGPVGSTS--FEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETS 1892 (2015)
Q Consensus 1815 ~qlgk~~~~~L~eyF~~~~g~~~s~~--f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~ 1892 (2015)
+++.+.. +++.+||.+.+++..... |.+|++||++|||||||+|||||||||||||||||.+||+||||||||||++
T Consensus 156 ~~i~~~~-~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~ 234 (350)
T cd00896 156 ASILKKY-GGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRD 234 (350)
T ss_pred HHHHHHH-HHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCC
Confidence 9998653 459999999887654432 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCC--CchHHHH
Q 000157 1893 PGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSR--GDPIGNL 1970 (2015)
Q Consensus 1893 Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~--~~~I~~L 1970 (2015)
|+ ++++|||||+||+++| ||.++++|+.|+++|++||+++|+|++.|++++++|+++|+|||+. .++|+++
T Consensus 235 p~----~~~~PFrLT~~mv~~m---Gg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l 307 (350)
T cd00896 235 PK----PFPPPMKLCKEMVEAM---GGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKV 307 (350)
T ss_pred CC----CCCCCeeccHHHHHHh---CCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHH
Confidence 96 4689999999999998 5567899999999999999999999999999999999999999973 4689999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhhC
Q 000157 1971 RKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQG 2012 (2015)
Q Consensus 1971 r~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ng 2012 (2015)
++||++++||+||.+||.++|++|+++|+|++||.+|.+.+.
T Consensus 308 ~~rf~l~~s~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~ 349 (350)
T cd00896 308 QEKFRLDLSDEEAIKHFQNLINDSVNALFPVVVDRLHAWAQY 349 (350)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999874
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=4.9e-78 Score=697.93 Aligned_cols=288 Identities=43% Similarity=0.681 Sum_probs=274.9
Q ss_pred EeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEE
Q 000157 1718 GIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLP 1797 (2015)
Q Consensus 1718 gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Vip 1797 (2015)
+|++.++++++|+++.|+++.|+..|+++ .++.+|||.|||||||++++|+|++||+||++.|+|++++||+|+|
T Consensus 2 ~~~~~~~k~~~~~~~~P~~~~~~~~~~~~-----~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~ 76 (289)
T cd00893 2 SKIYISPKILQSALKIPYLELKKLTDSTL-----INSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLP 76 (289)
T ss_pred CcccccchHHHHhhcCchhhccCccCCCC-----eeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEE
Confidence 46677889999988999999999987543 3589999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccC
Q 000157 1798 TGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNI 1877 (2015)
Q Consensus 1798 tg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~ 1877 (2015)
||+++|+||||||+.|++++.+...+++++||.+.||+..++.|.+|++||++|||||||+|||||||||||||||||++
T Consensus 77 ~s~~~GlIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~ 156 (289)
T cd00893 77 VSKTGGIIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSD 156 (289)
T ss_pred CCCCceeEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCC
Confidence 99999999999999999999988778899999999998888999999999999999999999999999999999999999
Q ss_pred CcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCC
Q 000157 1878 GRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSG 1957 (2015)
Q Consensus 1878 GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~Sg 1957 (2015)
||+||||||||||.+||+++.||++|||||+||+++|| |.+++.|+.|+++|+++|+++|+|++.|++++++|+++|
T Consensus 157 G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mG---g~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~ 233 (289)
T cd00893 157 GHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMG---GKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSG 233 (289)
T ss_pred CCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhC---CCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCC
Confidence 99999999999999999888999999999999999994 556889999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhhCcC
Q 000157 1958 LPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQGIE 2014 (2015)
Q Consensus 1958 LPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI~ 2014 (2015)
+|||+ .++++++++||++++||+||+++|.++|++|+++|+|++||.|||+|||||
T Consensus 234 lp~~~-~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi~ 289 (289)
T cd00893 234 LPCFR-GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQNGII 289 (289)
T ss_pred CcccC-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCC
Confidence 99997 789999999999999999999999999999999999999999999999997
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=5.9e-72 Score=648.38 Aligned_cols=263 Identities=40% Similarity=0.704 Sum_probs=248.1
Q ss_pred CCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhhccC---C
Q 000157 1746 GDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETT---D 1822 (2015)
Q Consensus 1746 G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~---~ 1822 (2015)
|+..++..+.+|||.|||||||+++||+|++|++||+++|+|++++||+|+|||+++|+||||||+.|++++.+.. .
T Consensus 25 ~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~~i~k~~~~~~ 104 (293)
T cd05168 25 GHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSIDSLKKKLTSKF 104 (293)
T ss_pred CcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHHHHHHHhccCC
Confidence 3333456689999999999999999999999999999999999999999999999999999999999999998764 5
Q ss_pred CcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCC
Q 000157 1823 GGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESA 1902 (2015)
Q Consensus 1823 ~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~v 1902 (2015)
..+++||.+.|+++ ++.|.+|++||++|||||||+|||||||||||||||||++||+|||||||+||.+||+ +.||+|
T Consensus 105 ~~l~~~f~~~~~~~-~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg~~~~~-~~~E~v 182 (293)
T cd05168 105 KSLLDFFKKTFGDP-SERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLSNSPGN-VGFETA 182 (293)
T ss_pred chHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhcccccC-CCCCCC
Confidence 68999999999865 6789999999999999999999999999999999999999999999999999999986 889999
Q ss_pred CccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhC-CCCCCC-CCchHHHHHHhcCCCCCH
Q 000157 1903 HFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDS-GLPCFS-RGDPIGNLRKRFHPEMSD 1980 (2015)
Q Consensus 1903 PFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~S-gLPcf~-~~~~I~~Lr~RF~l~lSe 1980 (2015)
|||||+||+++|| |.+++.|+.|+++|+++|++||+|++.|++++++|+.+ |+|||+ ..++++++++||++++||
T Consensus 183 PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se 259 (293)
T cd05168 183 PFKLTQEYIEVMG---GVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTE 259 (293)
T ss_pred CEEecHHHHHHhC---CCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCH
Confidence 9999999999984 56678899999999999999999999999999999987 999997 467899999999999999
Q ss_pred HHHHHHHHHHHHHhhhChhHHHHHHHHHhhhCc
Q 000157 1981 REAAIFMRNVCTDAYNKWTTAGYDLIQYLQQGI 2013 (2015)
Q Consensus 1981 ~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI 2013 (2015)
+||++||.++|++|+++|+|++||.|||+||||
T Consensus 260 ~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi 292 (293)
T cd05168 260 EQLEVFVDELINQSLDNWRTRLYDKFQYLTNGI 292 (293)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998
No 19
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-65 Score=617.56 Aligned_cols=264 Identities=39% Similarity=0.683 Sum_probs=250.4
Q ss_pred CCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhhcc-CCCc
Q 000157 1746 GDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGET-TDGG 1824 (2015)
Q Consensus 1746 G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~-~~~~ 1824 (2015)
|+..+|...++|+|.||||||+.++.|+|..|.+||+++|.++|++||+|+.||.+.|+||-|+|+.|+++|++. ....
T Consensus 580 g~~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~ 659 (847)
T KOG0903|consen 580 GHLPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLA 659 (847)
T ss_pred ccCCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhh
Confidence 444455667999999999999999999999999999999999999999999999999999999999999999887 4445
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCCCc
Q 000157 1825 LYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHF 1904 (2015)
Q Consensus 1825 L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPF 1904 (2015)
..+||.+.+|++++..|..|++||+.||||||++||+||||||||||||||.+||||||||||+|+.+|| |+.||.+||
T Consensus 660 ~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPg-nvgFEsAPF 738 (847)
T KOG0903|consen 660 SLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPG-NVGFESAPF 738 (847)
T ss_pred hHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCC-CcccccCch
Confidence 5678888899999999999999999999999999999999999999999999999999999999999995 699999999
Q ss_pred cCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhh-CCCCCCCC-CchHHHHHHhcCCCCCHHH
Q 000157 1905 KLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLD-SGLPCFSR-GDPIGNLRKRFHPEMSDRE 1982 (2015)
Q Consensus 1905 KLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~-SgLPcf~~-~~~I~~Lr~RF~l~lSe~E 1982 (2015)
|||.|++++| ||.+++.|.+|+.+|.++|.++|||++.|+.|+++|-+ +|+|||.. ..+|++||+||++++||+|
T Consensus 739 KLT~EylEvm---gG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq 815 (847)
T KOG0903|consen 739 KLTTEYLEVM---GGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQ 815 (847)
T ss_pred hhHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHH
Confidence 9999999999 57899999999999999999999999999999999987 99999975 3689999999999999999
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHHHHhhhCc
Q 000157 1983 AAIFMRNVCTDAYNKWTTAGYDLIQYLQQGI 2013 (2015)
Q Consensus 1983 Aa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI 2013 (2015)
+.+++..+|..|+++|+|++||.|||++|||
T Consensus 816 ~~~lV~~LI~kS~~S~~TrlYD~fQyitnGI 846 (847)
T KOG0903|consen 816 CQDLVLSLISKSLDSITTRLYDSFQYITNGI 846 (847)
T ss_pred HHHHHHHHHhhcccchhhhhhHHHHHHhccc
Confidence 9999999999999999999999999999999
No 20
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.2e-51 Score=563.98 Aligned_cols=292 Identities=34% Similarity=0.543 Sum_probs=261.1
Q ss_pred ccCCCCcceEEEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCC
Q 000157 1707 YLPTAPNKLVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGL 1786 (2015)
Q Consensus 1707 ~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gL 1786 (2015)
+.+.+|.+.|.++.++ ..++.|+.++|.++++++.| |+ .|++++|+|||||||+++||++++|+++|++++.
T Consensus 1758 ~~~~k~~v~I~~f~p~-~~~~~~~~~~p~rl~~rgsd--G~-----~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~ 1829 (2105)
T COG5032 1758 YLLDKPFVLIERFEPE-VSVVKSHLQRPRRLTIRGSD--GK-----LYSFIVKGGDDLRQDELALQLIRLMNKILKKDKE 1829 (2105)
T ss_pred cccCCCCceEEEecCc-eeeeecccccceEEEEEecC--Cc-----EEEEEeecCccchHHHHHHHHHHHHHHHHHhChH
Confidence 3333588999999987 56788889999999999987 63 5899999999999999999999999999999988
Q ss_pred ----ceeEeeeEEEEccCCCceeEEecCchhhhhhhccC-------------------------------------CCcH
Q 000157 1787 ----NLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETT-------------------------------------DGGL 1825 (2015)
Q Consensus 1787 ----DL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~-------------------------------------~~~L 1825 (2015)
|++++||+|+||++++|+||||||+.|++.|.++. ...+
T Consensus 1830 ~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1909 (2105)
T COG5032 1830 TRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVL 1909 (2105)
T ss_pred hhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchH
Confidence 99999999999999999999999999987653211 1235
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccC-CCCC
Q 000157 1826 YEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRF-ESAH 1903 (2015)
Q Consensus 1826 ~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~f-E~vP 1903 (2015)
|+||...|++ +..|..+|+||++|+|+|||+||+||+|||||+|||||+ +||+||||||+||+..||+ ++| |.||
T Consensus 1910 ~~~f~~~f~~--~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~-~~~pE~vP 1986 (2105)
T COG5032 1910 YDWFSESFPN--PEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGR-FPFPEKVP 1986 (2105)
T ss_pred HHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCC-CCCcccCc
Confidence 5666666654 578999999999999999999999999999999999999 9999999999999999975 776 9999
Q ss_pred ccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhC------CCCCCC-C-CchHHHHHHhcC
Q 000157 1904 FKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDS------GLPCFS-R-GDPIGNLRKRFH 1975 (2015)
Q Consensus 1904 FKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~S------gLPcf~-~-~~~I~~Lr~RF~ 1975 (2015)
||||++|+++||+.|+.+ .|+.+|+.+|.+||+|.+.|++++++|+++ ++||++ . ..++.++++||+
T Consensus 1987 FrLT~~iv~~mg~~g~EG-----~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~ 2061 (2105)
T COG5032 1987 FRLTRNIVEAMGVSGVEG-----SFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFR 2061 (2105)
T ss_pred HhhhHHHHHhcCccchhh-----HHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHH
Confidence 999999999997766533 399999999999999999999999999999 999996 2 246788889999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhChhHHHHHHHHHhhhCcC
Q 000157 1976 PEMSDREAAIFMRNVCTDAYNKWTTAGYDLIQYLQQGIE 2014 (2015)
Q Consensus 1976 l~lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~~~ngI~ 2014 (2015)
.+++++++..++.-.|.+++++..|..||.+|..+|||.
T Consensus 2062 ~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~ 2100 (2105)
T COG5032 2062 LKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMYIG 2100 (2105)
T ss_pred HHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccc
Confidence 999999999999999999999999999999999999985
No 21
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=2.3e-49 Score=449.85 Aligned_cols=223 Identities=26% Similarity=0.365 Sum_probs=202.1
Q ss_pred CceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc----CCceeEeeeEEEEc
Q 000157 1723 SGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV----GLNLYLFPYGVLPT 1798 (2015)
Q Consensus 1723 s~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~----gLDL~L~pY~Vipt 1798 (2015)
.++++.| +++|++++|.+.| |. .|.+|+|.|||||||++++|++++||.+|++. +++++++||+|+|+
T Consensus 7 ~~~v~~s-~~~P~~i~~~~~d--G~-----~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl 78 (237)
T cd00892 7 EVEILNS-LQKPKKITLIGSD--GN-----SYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPL 78 (237)
T ss_pred eEEEEec-cCCceEEEEEcCC--CC-----EEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEc
Confidence 4777877 7999999999876 63 48999999999999999999999999999997 89999999999999
Q ss_pred cCCCceeEEecCchhhhhhhcc-CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-
Q 000157 1799 GPEKGIIEVVPNTRSRSQMGET-TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN- 1876 (2015)
Q Consensus 1799 g~~~GlIE~Vpns~S~~qlgk~-~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~- 1876 (2015)
++++|+||||+|+.|++++.+. ....+.+||.++|++ ...|.++++||+.|||+|||+||||||||||+|||||++
T Consensus 79 ~~~~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~ 156 (237)
T cd00892 79 NEECGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPD--PSAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSN 156 (237)
T ss_pred CCCCceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcC
Confidence 9999999999999999988664 345688999998864 568999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhC
Q 000157 1877 IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDS 1956 (2015)
Q Consensus 1877 ~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~S 1956 (2015)
+||++|||||++||.++. ...+|+||||||++|+++||+.|.. +.|+..|+.++.+||+|.+.|++++++|+..
T Consensus 157 tG~~~HIDfg~~~~~~~~-~~~pe~vPFRLT~~~~~~lg~~g~~-----g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~d 230 (237)
T cd00892 157 TGDVVHVDFNCLFDKGET-LEVPERVPFRLTQNMVDAMGVLGVE-----GLFRKSCEVTLRLLRSNKETLMSVLETFIHD 230 (237)
T ss_pred CCcEEEEehHhhhccccc-CCCCCCCCcccCHHHHHHhCCCCCC-----CchHHHHHHHHHHHHhCHHHHHHHHHHHhhc
Confidence 999999999999998764 2468999999999999999776642 4799999999999999999999999999988
Q ss_pred CCCCC
Q 000157 1957 GLPCF 1961 (2015)
Q Consensus 1957 gLPcf 1961 (2015)
.+=++
T Consensus 231 pl~~w 235 (237)
T cd00892 231 PLVEW 235 (237)
T ss_pred cchhc
Confidence 77665
No 22
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.7e-49 Score=444.46 Aligned_cols=214 Identities=37% Similarity=0.586 Sum_probs=196.7
Q ss_pred eeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc-CCceeEeeeEEEE
Q 000157 1719 IRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV-GLNLYLFPYGVLP 1797 (2015)
Q Consensus 1719 I~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~-gLDL~L~pY~Vip 1797 (2015)
+..+.++++.| +++|++++|++.| |+ .|.+|+|.|||||||++++|++++|+.+|+++ +++++++||+|+|
T Consensus 3 ~~~~~~~v~~s-~~~P~~l~~~~~d--g~-----~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vip 74 (219)
T cd00142 3 IDVKICRIMPS-KTRPKKLTLIGAD--GK-----EYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIP 74 (219)
T ss_pred ccCCceEEEcc-cCCCEEEEEEccC--CC-----EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEE
Confidence 34456788888 7999999999887 63 48999999999999999999999999999999 9999999999999
Q ss_pred ccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-
Q 000157 1798 TGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN- 1876 (2015)
Q Consensus 1798 tg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~- 1876 (2015)
+++++|+||||+|+.|++ +.+.+||...+++ ...|.++++||++|+|+||++||+|||||||+|||||++
T Consensus 75 ls~~~GlIE~v~~~~sl~-------~~l~~~~~~~~~~--~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~ 145 (219)
T cd00142 75 LSPRSGLIEVVPGSVTLE-------DDLSKWLKRKSPD--EDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLD 145 (219)
T ss_pred ecCCceEEEEeCCCchhH-------HHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECC
Confidence 999999999999999987 4688999988764 458999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhh
Q 000157 1877 IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLD 1955 (2015)
Q Consensus 1877 ~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~ 1955 (2015)
+|+++||||||+||.+|+. ..+|++|||||++|+++||+.| .++.|+..|+++|.++|+|.+.|++++++|++
T Consensus 146 ~G~~~hIDfg~~~~~~~~~-~~~e~vPFRLT~~~~~~~g~~~-----~~g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~ 218 (219)
T cd00142 146 TGKLFHIDFGFIFGKRKKF-LGRERVPFRLTPDLVNALGTGG-----VFGPFRSLCVKAMLILRRHAGLLLNLLSLMLR 218 (219)
T ss_pred CCeEEEEeeHHhhCcCcCC-CCCCCCCEeccHHHHHHhCCcc-----hhhhHHHHHHHHHHHHHhChHHHHHHHHHhcc
Confidence 9999999999999999975 4599999999999999997543 46799999999999999999999999999985
No 23
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=2.8e-49 Score=448.54 Aligned_cols=227 Identities=25% Similarity=0.295 Sum_probs=202.3
Q ss_pred EEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHH----cCCceeEee
Q 000157 1717 RGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEA----VGLNLYLFP 1792 (2015)
Q Consensus 1717 ~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~----~gLDL~L~p 1792 (2015)
.++.+ .++++.| +++|++++|.+.| |. .|.+|+|.|||||||+++||++++||++|++ .+++++++|
T Consensus 2 ~~~~~-~v~v~~S-~~~Pkri~~~~~d--G~-----~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~ 72 (235)
T cd05172 2 VGFDE-RVLVLSS-LRKPKRITIRGSD--EK-----EYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRT 72 (235)
T ss_pred CCcCC-ceEEecc-CCCCEEEEEECCC--CC-----EEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeec
Confidence 34544 4778877 8999999999876 63 4899999999999999999999999999996 379999999
Q ss_pred eEEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCce
Q 000157 1793 YGVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNL 1872 (2015)
Q Consensus 1793 Y~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNI 1872 (2015)
|+|+|+++++|+||||+++.|++++.+. +.+.+||...+. +...|..+|+||++|||+||++||||||||||++||
T Consensus 73 y~vipls~~~GlIE~v~~~~sl~~i~~~--~~l~~~~~~~~~--~~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~NI 148 (235)
T cd05172 73 YQVIPMTPRFGLIEWLENTTPLKEILKN--DLLRRALVEMSA--SPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNF 148 (235)
T ss_pred ceEEEeCCCCceEEEcCCchhHHHHHhh--HHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcccE
Confidence 9999999999999999999999999764 567888887754 467899999999999999999999999999999999
Q ss_pred eEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 000157 1873 LFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVL 1951 (2015)
Q Consensus 1873 MId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~ 1951 (2015)
||++ +||++|||||++|+.+|+....+|+||||||++|+++||+.|.. +.|+..|+.++.++|+|.+.|+++++
T Consensus 149 li~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~-----G~f~~~~~~~~~~Lr~~~~~l~~~l~ 223 (235)
T cd05172 149 LVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD-----GLLRSCMVHTLRALRNERHLLLSTMD 223 (235)
T ss_pred EEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC-----ChHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9995 99999999999999999754568999999999999999876543 36999999999999999999999999
Q ss_pred HHhhCCCCCC
Q 000157 1952 LMLDSGLPCF 1961 (2015)
Q Consensus 1952 LMl~SgLPcf 1961 (2015)
+++...+=++
T Consensus 224 ~f~~dpl~~w 233 (235)
T cd05172 224 VFVKEPSLDW 233 (235)
T ss_pred HHhhCchhhh
Confidence 9997766444
No 24
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=5e-48 Score=429.31 Aligned_cols=194 Identities=43% Similarity=0.733 Sum_probs=182.4
Q ss_pred eeEeeeCCchhhHHHHHHHHHHHHHHHHHcC----CceeEeeeEEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHH
Q 000157 1755 ACIFKVGDDCRQDVLALQVISLLRDIFEAVG----LNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQ 1830 (2015)
Q Consensus 1755 ~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~g----LDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~ 1830 (2015)
++|||.|||||||++++|++++||+||++.+ +++++.||+|+|+++++|+||||+|+.|++++ +++||.
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i-------l~~~~~ 73 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI-------LYDWFK 73 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------HHHHHH
Confidence 3799999999999999999999999999987 99999999999999999999999999999998 899999
Q ss_pred HhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccCCCCCccC-CCCCccCcHH
Q 000157 1831 QDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRF-ESAHFKLSHE 1909 (2015)
Q Consensus 1831 ~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~f-E~vPFKLT~e 1909 (2015)
+.++. ...|.++++||++|||+||++||+|||||||+|||||+++||++|||||++||.+|+. ..+ |+||||||++
T Consensus 74 ~~~~~--~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~-~~~~e~vPFRLT~~ 150 (202)
T smart00146 74 KKFPD--PEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKL-FGFPERVPFRLTPE 150 (202)
T ss_pred HHCcC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccC-CCCCCCCCeecCHH
Confidence 99875 4579999999999999999999999999999999999999999999999999999975 556 9999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCC
Q 000157 1910 MTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSR 1963 (2015)
Q Consensus 1910 Mv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~ 1963 (2015)
|+++||+.| .++.|+..|+.+|.++|+|.+.|++++++|+.+++||+..
T Consensus 151 ~~~~lg~~~-----~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~ 199 (202)
T smart00146 151 MVDVMGDSG-----YFGLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRS 199 (202)
T ss_pred HHHHhCCCc-----ccchHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcC
Confidence 999996443 4678999999999999999999999999999999999964
No 25
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=9.7e-48 Score=445.90 Aligned_cols=228 Identities=23% Similarity=0.334 Sum_probs=196.3
Q ss_pred EeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc----CCceeEeee
Q 000157 1718 GIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV----GLNLYLFPY 1793 (2015)
Q Consensus 1718 gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~----gLDL~L~pY 1793 (2015)
++.+ .++++.| +++|++++|.+.| |+ .|.+|+|.|||||||++++|++++||.+|++. +.++.++||
T Consensus 3 ~f~~-~v~v~~s-~~~pk~i~~~gsd--G~-----~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty 73 (280)
T cd05169 3 SFDP-VLKVIPS-KQRPRRLTIVGSD--GK-----EYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTY 73 (280)
T ss_pred cccC-eEEEEeC-CCCCeEEEEECCC--CC-----EEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeec
Confidence 3443 3677876 8999999999877 64 48999999999999999999999999999986 489999999
Q ss_pred EEEEccCCCceeEEecCchhhhhhhccC---C----------------------------------------CcHHHHHH
Q 000157 1794 GVLPTGPEKGIIEVVPNTRSRSQMGETT---D----------------------------------------GGLYEIFQ 1830 (2015)
Q Consensus 1794 ~Viptg~~~GlIE~Vpns~S~~qlgk~~---~----------------------------------------~~L~eyF~ 1830 (2015)
+|+|+++++|+||||+|+.|+.++.+.. . ..+.+||.
T Consensus 74 ~Vipls~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~ 153 (280)
T cd05169 74 SVIPLSPNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILW 153 (280)
T ss_pred cEEecCCCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999988874310 0 01223333
Q ss_pred HhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHH
Q 000157 1831 QDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHE 1909 (2015)
Q Consensus 1831 ~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~e 1909 (2015)
..+ .++..|.++|+||++|||+|||+||||||||||++|||||. +|+++|||||++||.+++....+|+||||||++
T Consensus 154 ~~~--~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~ 231 (280)
T cd05169 154 LKS--PSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRM 231 (280)
T ss_pred HhC--CCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHH
Confidence 332 34578999999999999999999999999999999999999 999999999999999886545689999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCC
Q 000157 1910 MTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCF 1961 (2015)
Q Consensus 1910 Mv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf 1961 (2015)
|+++||+.|.. +.|+..|+.++.+||+|.+.|++++++|+...+-++
T Consensus 232 ~~~~lG~~g~~-----G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W 278 (280)
T cd05169 232 LVNALGVSGIE-----GTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSW 278 (280)
T ss_pred HHHHhCCCCCC-----CchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccc
Confidence 99999876642 479999999999999999999999999998887665
No 26
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.8e-47 Score=430.67 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=192.6
Q ss_pred EeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcC----CceeEeee
Q 000157 1718 GIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVG----LNLYLFPY 1793 (2015)
Q Consensus 1718 gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~g----LDL~L~pY 1793 (2015)
++.++ ++++.| +++|++++|.+.| |. .|.+|+|.|||||||++++|++++||.+|++.+ ++++++||
T Consensus 3 ~~~~~-v~v~~S-~~~P~~i~~~~~d--G~-----~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y 73 (222)
T cd05164 3 SFDDA-VRILGS-KQKPKKITLTGSD--GK-----KYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTY 73 (222)
T ss_pred cccCe-eEEecc-cCCCEEEEEECCC--CC-----EEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecc
Confidence 44433 677766 8999999999866 63 489999999999999999999999999999987 99999999
Q ss_pred EEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCcee
Q 000157 1794 GVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLL 1873 (2015)
Q Consensus 1794 ~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIM 1873 (2015)
+|+|+++++|+||||+|+.|++. .+.+||.+.+. +...|..+++||++|+|+||++||+||+||||++|||
T Consensus 74 ~vipls~~~GliE~v~~~~sl~~-------~l~~~~~~~~~--~~~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIl 144 (222)
T cd05164 74 AVIPLNSRSGLIEWVEGTTTLKP-------VLKKWFWLQFP--DPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNIL 144 (222)
T ss_pred eEEEcCCCCceEEEcCCcchHHH-------HHHHHHHHHCc--CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEE
Confidence 99999999999999999999873 47789988875 4578999999999999999999999999999999999
Q ss_pred Ecc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 000157 1874 FDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLL 1952 (2015)
Q Consensus 1874 Id~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~L 1952 (2015)
|+. +|+++|||||++|+.+++. ..+|+||||||++|+++||+.|. + +.|+..|+.++.++|+|.+.|++++++
T Consensus 145 i~~~tG~v~hIDf~~~~~~~~~~-~~~e~vPFRLT~~~~~~lg~~g~---~--G~f~~~~~~~~~~Lr~~~~~l~s~l~~ 218 (222)
T cd05164 145 IDRETGEVVHIDFGCIFEKGKTL-PVPELVPFRLTRNIINGMGITGV---E--GLFRKICEQTLEVFRKHRDTLIAFLEV 218 (222)
T ss_pred EECCCCcEEEEccHHhhccCCCC-CCCCCCCEEeCHHHHHHhCCCCc---C--ChHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999 9999999999999998754 34899999999999999987654 2 479999999999999999999999999
Q ss_pred Hhh
Q 000157 1953 MLD 1955 (2015)
Q Consensus 1953 Ml~ 1955 (2015)
|+.
T Consensus 219 fv~ 221 (222)
T cd05164 219 FVY 221 (222)
T ss_pred Hhc
Confidence 874
No 27
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=2.8e-46 Score=433.72 Aligned_cols=222 Identities=26% Similarity=0.330 Sum_probs=194.8
Q ss_pred ceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc----CCceeEeeeEEEEcc
Q 000157 1724 GIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV----GLNLYLFPYGVLPTG 1799 (2015)
Q Consensus 1724 ~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~----gLDL~L~pY~Viptg 1799 (2015)
..++.| +++|++++|.+.| |. .|.+|+|.|||||||+++||++++||++|++. +.+++++||.|+|++
T Consensus 8 v~v~~s-~~~Pkri~~~gsd--G~-----~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 8 FTTAGG-INAPKIITCVGSD--GK-----KYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred EEEecC-CCCCEEEEEECCC--CC-----EEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 345555 8889999999877 74 48999999999999999999999999999986 799999999999999
Q ss_pred CCCceeEEecCchhhhhhhccC-------------------------------------------CCcHHHHHHHhhCCC
Q 000157 1800 PEKGIIEVVPNTRSRSQMGETT-------------------------------------------DGGLYEIFQQDFGPV 1836 (2015)
Q Consensus 1800 ~~~GlIE~Vpns~S~~qlgk~~-------------------------------------------~~~L~eyF~~~~g~~ 1836 (2015)
+++|+||||+|+.|+.++.+.. ...+++||...|+
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~-- 157 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFL-- 157 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCc--
Confidence 9999999999999988763211 0113455666665
Q ss_pred CChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhc
Q 000157 1837 GSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLD 1915 (2015)
Q Consensus 1837 ~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg 1915 (2015)
++..|.++|+||++|||+||++||||||||||++||||+. +|+++|||||++||.+++ ...+|+||||||++|+++||
T Consensus 158 ~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~-l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 158 DPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKI-LPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcC-CCCCCcCChhhhHHHHHHhC
Confidence 4578999999999999999999999999999999999996 999999999999999876 46789999999999999998
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCC
Q 000157 1916 PSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCF 1961 (2015)
Q Consensus 1916 ~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf 1961 (2015)
+.|.. +.|+..|+.++.+||++.+.|++++++|+...+-++
T Consensus 237 ~~g~~-----g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W 277 (279)
T cd05171 237 ITGVE-----GVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSW 277 (279)
T ss_pred CCCCc-----chHHHHHHHHHHHHHcChHHHHHHHHHHHhCccccc
Confidence 76652 479999999999999999999999999998877665
No 28
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=4.4e-43 Score=411.69 Aligned_cols=225 Identities=20% Similarity=0.311 Sum_probs=189.3
Q ss_pred ceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc----CCceeEeeeEEEEcc
Q 000157 1724 GIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV----GLNLYLFPYGVLPTG 1799 (2015)
Q Consensus 1724 ~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~----gLDL~L~pY~Viptg 1799 (2015)
..++.| +++|++++|.+.| |. .|.+|+|.|||||||+++||++++||.+|++. ..++.++||.|+|++
T Consensus 8 v~V~~S-k~~Pkri~~~gsD--G~-----~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 8 VTILPT-KTKPKKLAFLGSD--GK-----KYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred EEEEec-CCCceEEEEECCC--CC-----EEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 567755 9999999999877 74 48999999999999999999999999999884 578999999999999
Q ss_pred CCCceeEEecCchhhhhhhccC-----------------CCc--------------------------------------
Q 000157 1800 PEKGIIEVVPNTRSRSQMGETT-----------------DGG-------------------------------------- 1824 (2015)
Q Consensus 1800 ~~~GlIE~Vpns~S~~qlgk~~-----------------~~~-------------------------------------- 1824 (2015)
+++|+||||+|+.|+.++.+.. ...
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999987652210 000
Q ss_pred HHHHHHH---hh-----------CCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEeccccc
Q 000157 1825 LYEIFQQ---DF-----------GPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFIL 1889 (2015)
Q Consensus 1825 L~eyF~~---~~-----------g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIf 1889 (2015)
..+.|.+ ++ ...++..|..+|++|++|||+||++||||||||||++||||+. +|+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 0111110 00 1234568999999999999999999999999999999999996 9999999999999
Q ss_pred ccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCC
Q 000157 1890 ETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFS 1962 (2015)
Q Consensus 1890 g~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~ 1962 (2015)
+.++. ...+|.||||||++|+++||+.|.. +.|+..|+.++.+||++.+.|++++++++...+-+++
T Consensus 240 ~~~~~-l~~pE~VPFRLT~~~~~~lg~~g~~-----G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKS-LRIPEKVPFRMTQNIETALGLTGVE-----GVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCC-CCCCCCCCeeeCHHHHHHhCCCCCc-----hhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 98753 3468999999999999999876642 5799999999999999999999999999988776653
No 29
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=9.9e-43 Score=377.26 Aligned_cols=175 Identities=51% Similarity=0.848 Sum_probs=164.9
Q ss_pred HHhhChHHHHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCchhchHHHHHhCCCCCCCCHHHHHHhcCC
Q 000157 1473 AFQVDPRIALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKAVDEDSALLQQLPHWAACSITQALEFLTP 1552 (2015)
Q Consensus 1473 Aw~~~P~lal~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~~~e~~~~L~lL~~W~pi~p~~ALeLLs~ 1552 (2015)
||++||.+|++++.||| ++.++.|+++|||+||+++.++|+||++|+++.+.+++.+.+++|.+|+|++|++||+||+|
T Consensus 1 aw~~~P~lav~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~ 79 (175)
T cd00871 1 AWAISPRLAIHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLVTGKSVDENSPDLKYLLYWAPVSPVQALSLFTP 79 (175)
T ss_pred CCCcCHHHHHHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHhCccChhhHHHHHHHHcCCCCCCHHHHHHHhCc
Confidence 79999999999999999 77999999999999999999999999999999888888888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCChhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccc
Q 000157 1553 AYKGHPRVMAYILRVLESYPPERVTFFMPQLVQALRYDDERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDA 1632 (2015)
Q Consensus 1553 ~f~~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~ 1632 (2015)
.|++||.||+|||++|+++++|++++||||||||||||..|++++||+++|+.|++|||||||||++|+|+|++++++|+
T Consensus 80 ~y~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de~~~~~~~ 159 (175)
T cd00871 80 QYPGHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDEEGKPKDP 159 (175)
T ss_pred ccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998873332
Q ss_pred cccccchHHHHHHHHHHHHhhc
Q 000157 1633 NSVKNGSFQTLLPMVRQRIIDG 1654 (2015)
Q Consensus 1633 ~~~k~~rf~~~L~~l~~~il~~ 1654 (2015)
.++++|++++++|+++
T Consensus 160 ------~i~~~ld~~~~~ii~~ 175 (175)
T cd00871 160 ------AIKPTLDRVMEKIIDS 175 (175)
T ss_pred ------chHHHHHHHHHHHhcC
Confidence 3468999999988753
No 30
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=2.9e-42 Score=388.42 Aligned_cols=204 Identities=32% Similarity=0.460 Sum_probs=163.0
Q ss_pred ceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEEccCCCceeEEecCchhhhhhhccC------------
Q 000157 1754 QACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGETT------------ 1821 (2015)
Q Consensus 1754 ~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~~------------ 1821 (2015)
|++|||.|||+|||++++|++++|+.+|++++...++++|.|+|+++++|+|||||++.|+.++.++.
T Consensus 2 y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~ 81 (235)
T PF00454_consen 2 YSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPS 81 (235)
T ss_dssp EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC--
T ss_pred ceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999988764321
Q ss_pred ----------------CCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeE-ccCCcEEEEe
Q 000157 1822 ----------------DGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLF-DNIGRLVHID 1884 (2015)
Q Consensus 1822 ----------------~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMI-d~~GhlfHID 1884 (2015)
..++.+||...+.+ ...|.+++++|++|+|+|||++|+||+||||++|||| ..+|+++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~hID 159 (235)
T PF00454_consen 82 RKYKAKLFEKQSSKVPKDGLRQYFLKSFPS--AEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELIHID 159 (235)
T ss_dssp ----------------TTHHHHHHHHHSCT--THHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEEE--
T ss_pred cccccccccccccccccchHHHHHHhcCCC--hhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceeeeEE
Confidence 13467888887643 5789999999999999999999999999999999999 4599999999
Q ss_pred cccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCC
Q 000157 1885 FGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFS 1962 (2015)
Q Consensus 1885 FGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~ 1962 (2015)
||++|+ .+ ...++|+||||||++|+++|++. ......++.|+..|+.++.++|+|.+.|++++++|+..++++++
T Consensus 160 fg~~f~-~~-~~~~~e~vPFrLT~~~~~~~~~~-l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 160 FGFIFG-GK-HLPVPETVPFRLTRNMVNAMGGY-LGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp HSSCTT-HH-HGSSSS--SSTTHHHHHHHTTTS-SSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eHHhhh-cc-ccCCCCCCCeEeCHHHHHHHhcc-CCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 999999 33 33578999999999999999421 13455689999999999999999999999999999999999985
No 31
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=8.8e-41 Score=401.06 Aligned_cols=278 Identities=19% Similarity=0.297 Sum_probs=219.7
Q ss_pred CCcccCCCCcceEEEeeccCceeeccCCCCcEEEEEEeec---------------------CC----------CCCC---
Q 000157 1704 EDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMITFNVVD---------------------RD----------GDQS--- 1749 (2015)
Q Consensus 1704 ~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d---------------------~~----------G~~~--- 1749 (2015)
.++..|++|.++++.|+..-.+++.+++++|.|+.|.+.. +. |.+.
T Consensus 936 ~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (1374)
T PTZ00303 936 HPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKGTG 1015 (1374)
T ss_pred cccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhcccccccccC
Confidence 5788999999999999998888899988999999997531 00 1000
Q ss_pred ----------------------CCC----------cceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEEE
Q 000157 1750 ----------------------NVM----------PQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVLP 1797 (2015)
Q Consensus 1750 ----------------------~~~----------~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Vip 1797 (2015)
.+. .+.+|||.| |||||||++|||++||.||+++++|++|+||+|+|
T Consensus 1016 ~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRVLA 1094 (1374)
T PTZ00303 1016 AAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSVLP 1094 (1374)
T ss_pred CCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEEEe
Confidence 000 268999996 99999999999999999999999999999999999
Q ss_pred ccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccC
Q 000157 1798 TGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNI 1877 (2015)
Q Consensus 1798 tg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~ 1877 (2015)
||++.|+||+||+. ++.++.. ..+.+||+. +. . .+++||++|||||||+|||||||||||||||||.+
T Consensus 1095 TG~dsGLIEfVps~-tLAsI~~---~~Il~YLr~--~~--t----~~~~NFi~S~AGYsViTYILgIgDRHngNILId~d 1162 (1374)
T PTZ00303 1095 LSCDSGLIEKAEGR-ELSNLDN---MDIASYVLY--RG--T----RSCINFLASAKLFLLLNYIFSIGDRHKGNVLIGTN 1162 (1374)
T ss_pred ccCCcccEEEecch-HHHHhhh---hHHHHHHHh--cC--c----HHHHHHHHHHHHHHHHHHHhccCcccCCceeEcCC
Confidence 99999999999976 4555532 358999873 22 1 34789999999999999999999999999999999
Q ss_pred CcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCC--------------------------------CC------
Q 000157 1878 GRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPS--------------------------------GV------ 1919 (2015)
Q Consensus 1878 GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~--------------------------------Gg------ 1919 (2015)
||+||||||||||..+.. -+.-+.|.|+...|...++.. |+
T Consensus 1163 GhLfHIDFGFILg~rtfk-eKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa~ 1241 (1374)
T PTZ00303 1163 GALLHIDFRFIFSEKTFV-EKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPAS 1241 (1374)
T ss_pred CCEEEEecceeecCchhh-hccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCCC
Confidence 999999999999987621 145678999999998765310 11
Q ss_pred -------CCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhh-CCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 000157 1920 -------MKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLD-SGLPCFSRGDPIGNLRKRFHPEMSDREAAIFMRNVC 1991 (2015)
Q Consensus 1920 -------~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~-SgLPcf~~~~~I~~Lr~RF~l~lSe~EAa~~m~~lI 1991 (2015)
...+.-..|..-...-|.-+|+|+..+..|+.-.+. --+| ....+-...|.--|.-+.+++..+..|...+
T Consensus 1242 p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~-~~~~e~~~~~nt~f~r~as~~s~~~~f~~~~ 1320 (1374)
T PTZ00303 1242 PTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVP-YNDAEMLNMLNTLFDRHASQTSSASKFSTTM 1320 (1374)
T ss_pred cccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 112345678888889999999999999988877664 4455 3323444555556677788888888888888
Q ss_pred HHhhh
Q 000157 1992 TDAYN 1996 (2015)
Q Consensus 1992 ~~S~~ 1996 (2015)
++|.+
T Consensus 1321 k~s~~ 1325 (1374)
T PTZ00303 1321 KESVN 1325 (1374)
T ss_pred HHhcC
Confidence 88875
No 32
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-38 Score=421.34 Aligned_cols=427 Identities=21% Similarity=0.294 Sum_probs=301.6
Q ss_pred CCCCCCHHHHHHhcCCCCCCCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCChh---HHHHHHHHHhhcCchhHHHH
Q 000157 1537 HWAACSITQALEFLTPAYKGHPRVMAYILRVLESYPPERVTFFMPQLVQALRYDDER---LVEGYLLRATQRSDIFAHIL 1613 (2015)
Q Consensus 1537 ~W~pi~p~~ALeLLs~~f~~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~~~---lv~~FLl~rA~~s~~~aHql 1613 (2015)
.|++.+..+-+.. +-..+-..--++++.+|.-+...-++||+-.+-|-+.. .+...|.+-...- -+|-
T Consensus 1858 ~~ek~~r~ei~s~------~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~Y---Pqq~ 1928 (2382)
T KOG0890|consen 1858 SVEKAPRGEIVSK------NLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAY---PQQT 1928 (2382)
T ss_pred ccccCChhhhhhh------hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC---chHH
Confidence 5777766665554 11122333445888889999999999999988886543 2333444444332 3689
Q ss_pred HhhhhcccccCCCCCcccccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhc-ccCCCChHHHHHHH
Q 000157 1614 IWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRQRIIDGFNPKALDLFQREFDFFDKVTNISG-ALYPLPKEERRAGI 1692 (2015)
Q Consensus 1614 ~W~Lkae~~~~~~~~~~d~~~~k~~rf~~~L~~l~~~il~~~s~~~~~~~~rE~~f~dkLt~ISg-~lk~~~K~erk~~i 1692 (2015)
.|.|.+-+.. .... ...|...+|...+ +.++.-.+++....+.-++|+++.. .+.+. .+...+
T Consensus 1929 lW~~~a~~kS-~~p~-------R~~R~keIL~k~~-----~~~~~~~~l~~da~~lTe~L~~lcn~~v~~s---s~~~sl 1992 (2382)
T KOG0890|consen 1929 LWQSAALSKS-NVPS-------RVERCKEILTKSR-----RQKPDYKKLLSDAYDLTEKLTNLCNKKVNSS---SKVLSL 1992 (2382)
T ss_pred HHHHHHHHhc-ccHH-------HHHHHHHHHHHHH-----hcCccHHHHHHHHHHHHHHHHHHhcCCCCcc---cccccH
Confidence 9999874431 1111 1223444554222 2233345566666777788888753 33331 111222
Q ss_pred HHHHHH---------hhccCC---CcccCCC-----------Ccc----eEEEeeccCceeeccCCCCcEEEEEEeecCC
Q 000157 1693 RRELEK---------IEMAGE---DLYLPTA-----------PNK----LVRGIRVDSGIPLQSAAKVPIMITFNVVDRD 1745 (2015)
Q Consensus 1693 ~eeL~k---------i~~~~~---~v~LP~n-----------P~~----~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~ 1745 (2015)
+.+.++ |-++-. ...+|.. |-. .|.|++ ++.+++.| .++|++|.+++.|
T Consensus 1993 ~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~S-LqKPKkI~l~GsD-- 2068 (2382)
T KOG0890|consen 1993 KTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNS-LQKPKKIKLRGSD-- 2068 (2382)
T ss_pred HHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcch-HHHHHHHh-ccCCeEEEEEcCC--
Confidence 233321 111100 1123332 222 366776 45777776 8999999999988
Q ss_pred CCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHH----cCCceeEeeeEEEEccCCCceeEEecCchhhhhhhc--
Q 000157 1746 GDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEA----VGLNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGE-- 1819 (2015)
Q Consensus 1746 G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~----~gLDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk-- 1819 (2015)
|+ .|.+|+|..||||+|.+.|++-.++|+++++ ....++++||.|||++.+||+||||||+.++..|-.
T Consensus 2069 Gk-----~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~kl 2143 (2382)
T KOG0890|consen 2069 GK-----IYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKL 2143 (2382)
T ss_pred CC-----EeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHH
Confidence 74 4899999999999999999999999999988 357899999999999999999999999998654310
Q ss_pred -----------c--------------------------CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhh
Q 000157 1820 -----------T--------------------------TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLL 1862 (2015)
Q Consensus 1820 -----------~--------------------------~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYIL 1862 (2015)
+ .-.-+++||...|-. +.+|..+|.||+||.|.+||+||||
T Consensus 2144 Y~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPe--P~sW~~SR~~Y~rTtAVMSmVGyIl 2221 (2382)
T KOG0890|consen 2144 YMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPE--PGSWFASRNNYARTTAVMSMVGYIL 2221 (2382)
T ss_pred HHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 012256888888854 4689999999999999999999999
Q ss_pred cCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHh
Q 000157 1863 QPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARR 1941 (2015)
Q Consensus 1863 GIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk 1941 (2015)
|+||||.+|||+|. +|..+|+||..+|+++.- .-+||.||||||++||++||++|.. +.|++.|+.++..+|+
T Consensus 2222 GLGDRHgENILFDs~TGdcVHVDFnCLFnKGet-levPEiVPFRLT~NMidamGp~G~E-----G~Frk~cEiTLrLlR~ 2295 (2382)
T KOG0890|consen 2222 GLGDRHGENILFDSTTGDCVHVDFNCLFNKGET-LEVPELVPFRLTQNMIDAMGPLGLE-----GSFRKVCEITLRLLRK 2295 (2382)
T ss_pred cCccccccceeeecCCCcEEEEeecccccCCcc-cCCCCccceecchhHHhhcCCcccc-----hhHHHHHHHHHHHHHh
Confidence 99999999999996 999999999999998652 2379999999999999999998864 3699999999999999
Q ss_pred chhHHHHHHHHHhhCCCCCCCC-------------CchHHHHHHhcCCCCC----HHHHHHHHHHHHHHhhh-ChhHHHH
Q 000157 1942 YMDGIINTVLLMLDSGLPCFSR-------------GDPIGNLRKRFHPEMS----DREAAIFMRNVCTDAYN-KWTTAGY 2003 (2015)
Q Consensus 1942 ~~~~Ii~L~~LMl~SgLPcf~~-------------~~~I~~Lr~RF~l~lS----e~EAa~~m~~lI~~S~~-s~~T~~Y 2003 (2015)
|.+.++++++.+++.++-++.. ...|..+|+|++=-+. .=..+-+...+|++|++ ..-..+|
T Consensus 2296 n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MY 2375 (2382)
T KOG0890|consen 2296 NRETLMSILETFVYDPLVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMY 2375 (2382)
T ss_pred cchhHHHHHHHHHhCchhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999887655531 1235678888864221 11222467788999985 5555666
Q ss_pred HH
Q 000157 2004 DL 2005 (2015)
Q Consensus 2004 D~ 2005 (2015)
=.
T Consensus 2376 IG 2377 (2382)
T KOG0890|consen 2376 IG 2377 (2382)
T ss_pred hh
Confidence 43
No 33
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=6.3e-37 Score=351.32 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=190.7
Q ss_pred ccCCCCcEEEEEEeecCCCCCCCCCcceeEee--eCCchhhHHHHHHHHHHHHHHHHH----cCCceeEeeeEEEEccCC
Q 000157 1728 QSAAKVPIMITFNVVDRDGDQSNVMPQACIFK--VGDDCRQDVLALQVISLLRDIFEA----VGLNLYLFPYGVLPTGPE 1801 (2015)
Q Consensus 1728 ~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK--~GDDLRQD~LaLQlI~lmd~I~~~----~gLDL~L~pY~Viptg~~ 1801 (2015)
..+.++|.+|++.+.| |+ .|.+++| .|+|+|+|++++|+++++|.++++ ...++.+++|.|+|+++.
T Consensus 12 ~~~~~~pkri~i~gsd--G~-----~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPLs~~ 84 (253)
T cd05163 12 RGHGYCYRRLTIRGHD--GS-----IYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPLSPQ 84 (253)
T ss_pred ccCCCcCcEEEEECCC--CC-----EEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEcCCc
Confidence 3446899999999987 74 4899999 578999999999999999999975 356889999999999999
Q ss_pred CceeEEecCchhhhhhhcc-------------CCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCC
Q 000157 1802 KGIIEVVPNTRSRSQMGET-------------TDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRH 1868 (2015)
Q Consensus 1802 ~GlIE~Vpns~S~~qlgk~-------------~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRH 1868 (2015)
+|+|||++++.|+.++-+. .+..+++||..++.+ ...|..+|++|++|+|.+|+++||||+||||
T Consensus 85 ~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~--~~~~~~~r~~ft~s~A~~s~~gYilglgdRh 162 (253)
T cd05163 85 IRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPT--YQDYWLFRKQFTYQLALLSFMTYILSINNRN 162 (253)
T ss_pred cceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999997765321 123577888888753 5789999999999999999999999999999
Q ss_pred CCceeEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHH
Q 000157 1869 NGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGII 1947 (2015)
Q Consensus 1869 ndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii 1947 (2015)
++||||+. +|+++|||||++|+.+......+|+||||||++|+++||+.|.. +.|+..|+.+..++|++.+.++
T Consensus 163 ~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~e-----G~f~~~~~~~~~~Lr~~~~~l~ 237 (253)
T cd05163 163 PDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLE-----GILTSSMMAIARCLTEPEFDLE 237 (253)
T ss_pred chhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcC-----CcHHHHHHHHHHHHhcCHHHHH
Confidence 99999998 99999999999998754321268999999999999999987764 3699999999999999999999
Q ss_pred HHHHHHhhCCCCCC
Q 000157 1948 NTVLLMLDSGLPCF 1961 (2015)
Q Consensus 1948 ~L~~LMl~SgLPcf 1961 (2015)
+++++++...+-++
T Consensus 238 ~~L~~fi~Dpl~~W 251 (253)
T cd05163 238 NALQLFIRDELIAW 251 (253)
T ss_pred HHHHHHHcChhhhh
Confidence 99999998776554
No 34
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.5e-33 Score=368.99 Aligned_cols=241 Identities=23% Similarity=0.316 Sum_probs=196.9
Q ss_pred eEEEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEee-eCCchhhHHHHHHHHHHHHHHHHH----cCCcee
Q 000157 1715 LVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFK-VGDDCRQDVLALQVISLLRDIFEA----VGLNLY 1789 (2015)
Q Consensus 1715 ~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK-~GDDLRQD~LaLQlI~lmd~I~~~----~gLDL~ 1789 (2015)
.|++..-+ .... ..-.+|+++++.+.| |+ .|+-++| +|||||||..+.|+|...|+++++ ..++|.
T Consensus 2442 ~i~s~~~~-v~~~-~GinaPkiI~c~gSD--G~-----~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~ 2512 (2806)
T KOG0892|consen 2442 TVVSFDDT-VTFA-GGINAPKVITCVGSD--GK-----TYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLS 2512 (2806)
T ss_pred eEEecccc-eeee-cCccCCeEEEEEccC--ch-----hHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccc
Confidence 35555432 2223 346899999999987 64 3788999 779999999999999999999987 468999
Q ss_pred EeeeEEEEccCCCceeEEecCchhhhhhhc------c---CCC----------------------------------c-H
Q 000157 1790 LFPYGVLPTGPEKGIIEVVPNTRSRSQMGE------T---TDG----------------------------------G-L 1825 (2015)
Q Consensus 1790 L~pY~Viptg~~~GlIE~Vpns~S~~qlgk------~---~~~----------------------------------~-L 1825 (2015)
|+||+|+|+++..|+||||.|++++.+.-- + ..+ . +
T Consensus 2513 irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~Pvf 2592 (2806)
T KOG0892|consen 2513 IRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVF 2592 (2806)
T ss_pred eeEEeeeecCcccceeecccCCeehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHH
Confidence 999999999999999999999999887521 1 000 0 1
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccCCCCCc
Q 000157 1826 YEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHF 1904 (2015)
Q Consensus 1826 ~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPF 1904 (2015)
+-||.++|- ++-.|.++|.+|+||.|+-||+|||||+||||..|||||. +|.+||||+|..|+.+.. ...||.|||
T Consensus 2593 ryFflEkF~--dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGki-lptPE~VPF 2669 (2806)
T KOG0892|consen 2593 RYFFLEKFP--DPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKI-LPTPETVPF 2669 (2806)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCc-CCCCCcccc
Confidence 123445553 3568999999999999999999999999999999999999 999999999999998653 246999999
Q ss_pred cCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCCCCchHHHHHHh
Q 000157 1905 KLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFSRGDPIGNLRKR 1973 (2015)
Q Consensus 1905 KLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~~~~~I~~Lr~R 1973 (2015)
|||+++|+.||..|. + +-||+.|++.+.+||++.+.++++++.++..+|-.+. -.+++.++.-
T Consensus 2670 RLTRDiVdgmGItGv---e--GvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~-msplK~~~~q 2732 (2806)
T KOG0892|consen 2670 RLTRDIVDGMGITGV---E--GVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWL-MSPLKALKKQ 2732 (2806)
T ss_pred eeehhhccccCccCc---h--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHh-hcHHHHHHHH
Confidence 999999998876654 3 4799999999999999999999999999999886663 3345544443
No 35
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=99.97 E-value=2.6e-32 Score=299.94 Aligned_cols=166 Identities=28% Similarity=0.411 Sum_probs=146.3
Q ss_pred HhhChHHHHHHhhcCCCchhhhHHHHHHHHhChhhh-ccCCCchhhccccCch---hchHHHHHhCCCCCCCCHHHHHHh
Q 000157 1474 FQVDPRIALSLASRFPANASLKAEVTQLVQLHILDI-RCIPEALPYFVTPKAV---DEDSALLQQLPHWAACSITQALEF 1549 (2015)
Q Consensus 1474 w~~~P~lal~l~~rfp~~~~L~~e~~~Lv~k~r~~l-~~~PeAL~~~L~~~~~---~e~~~~L~lL~~W~pi~p~~ALeL 1549 (2015)
+..+++.+++.+.++||...++.|+++++|++|+++ .++|+|||+|+.+.+| .++.+++.+|..|+|++|++||+|
T Consensus 3 ~~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~L 82 (184)
T smart00145 3 LNIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALEL 82 (184)
T ss_pred CCHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345778889999999999999999999999999765 5899999999965544 456688899999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccC--ChhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCC
Q 000157 1550 LTPAYKGHPRVMAYILRVLESYPPERVTFFMPQLVQALRYD--DERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESG 1627 (2015)
Q Consensus 1550 Ls~~f~~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE--~~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~ 1627 (2015)
|++.|+ |+.||+|||++|++++||++.+|||||||||||| .++.+++||++||.+|+.|||+|||+|++|++++..
T Consensus 83 L~~~~~-~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~- 160 (184)
T smart00145 83 LSPKFP-DPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHY- 160 (184)
T ss_pred hCccCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchh-
Confidence 999998 8999999999999999999999999999999999 678899999999999999999999999999975432
Q ss_pred CcccccccccchHHHHHHHHHHH
Q 000157 1628 KEKDANSVKNGSFQTLLPMVRQR 1650 (2015)
Q Consensus 1628 ~~~d~~~~k~~rf~~~L~~l~~~ 1650 (2015)
..+|..+++++...
T Consensus 161 ---------~~r~~~~le~~l~~ 174 (184)
T smart00145 161 ---------SIRFGLLLEAYLRG 174 (184)
T ss_pred ---------HHHHHHHHHHHHHH
Confidence 24666677665544
No 36
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=99.97 E-value=9.5e-32 Score=292.01 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=140.2
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCc---hhchHHHHHhCCCCCCCCHHHHHHhcCCCCCCC
Q 000157 1481 ALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKA---VDEDSALLQQLPHWAACSITQALEFLTPAYKGH 1557 (2015)
Q Consensus 1481 al~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~---~~e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~ 1557 (2015)
.++.+.++||...++.|+++++|+||+++.++|+|||+|+.+.+ .+++.+++.+|..|++++|++||+||++.|+ |
T Consensus 6 ~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~-d 84 (171)
T cd00872 6 QLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFP-D 84 (171)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCC-C
Confidence 35667778888899999999999999999999999999987554 4566778899999999999999999999998 6
Q ss_pred HHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCC--hhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCccccccc
Q 000157 1558 PRVMAYILRVLESYPPERVTFFMPQLVQALRYDD--ERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSV 1635 (2015)
Q Consensus 1558 p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~--~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~ 1635 (2015)
+.||+|||++|++++|+++..||||||||||||. ++.+.+||++||.+|+.|||+|||+|++|++++..
T Consensus 85 ~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~--------- 155 (171)
T cd00872 85 EHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSV--------- 155 (171)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHH---------
Confidence 9999999999999999999999999999999996 56677899999999999999999999999986543
Q ss_pred ccchHHHHHHHHHH
Q 000157 1636 KNGSFQTLLPMVRQ 1649 (2015)
Q Consensus 1636 k~~rf~~~L~~l~~ 1649 (2015)
..||..+++++..
T Consensus 156 -~~R~~~~le~~l~ 168 (171)
T cd00872 156 -SQRFGLLLEAYLR 168 (171)
T ss_pred -HHHHHHHHHHHHh
Confidence 3477777776643
No 37
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=99.97 E-value=1.4e-31 Score=289.53 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=130.0
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccC-ch--hchHHHHHhCCCCCCCCHHHHHHhcCCCCCCC
Q 000157 1481 ALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPK-AV--DEDSALLQQLPHWAACSITQALEFLTPAYKGH 1557 (2015)
Q Consensus 1481 al~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~-~~--~e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~ 1557 (2015)
.++.+...++...++.|+++++|++|+++.++|+|||+|+.+. .| .+..+++.+|..|+|++|++||+||++.|+ |
T Consensus 6 ~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~ALeLL~~~f~-d 84 (169)
T cd00869 6 KLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIALELLLPKFP-D 84 (169)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHHHHHcCCcCC-C
Confidence 4556666788889999999999999999999999999999853 33 345566788999999999999999999998 6
Q ss_pred HHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCC--hhHHHHHHHHHhhcCchhHHHHHhhhhcccccCC
Q 000157 1558 PRVMAYILRVLESYPPERVTFFMPQLVQALRYDD--ERLVEGYLLRATQRSDIFAHILIWHLQGETFVPE 1625 (2015)
Q Consensus 1558 p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~--~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~ 1625 (2015)
+.||+|||++|++++||++++||||||||||||. .+.+++||++||.+|+.|||+|||+|++|++++.
T Consensus 85 ~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~ 154 (169)
T cd00869 85 QEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCY 154 (169)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCch
Confidence 8999999999999999999999999999999997 5788999999999999999999999999998643
No 38
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=99.97 E-value=8.1e-31 Score=283.98 Aligned_cols=141 Identities=26% Similarity=0.441 Sum_probs=131.3
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCchh---chHHHHHhCCCCCCCCHHHHHHhcCCCCCCC
Q 000157 1481 ALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKAVD---EDSALLQQLPHWAACSITQALEFLTPAYKGH 1557 (2015)
Q Consensus 1481 al~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~~~---e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~ 1557 (2015)
.++.+.++|+...++.|+++++|+||+++.++|+|||+|+.+.+|. ++.+++++|..|++++|++||+||++.|+ |
T Consensus 13 ~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~-~ 91 (166)
T cd00870 13 ELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFT-N 91 (166)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCC-C
Confidence 4667788888889999999999999999999999999999877664 45678899999999999999999999998 8
Q ss_pred HHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCCh---------hHHHHHHHHHhhcCchhHHHHHhhhhcccc
Q 000157 1558 PRVMAYILRVLESYPPERVTFFMPQLVQALRYDDE---------RLVEGYLLRATQRSDIFAHILIWHLQGETF 1622 (2015)
Q Consensus 1558 p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~~---------~lv~~FLl~rA~~s~~~aHql~W~Lkae~~ 1622 (2015)
+.||+|||++|++++||++.+||||||||||||.. +.+++||++||.+|+.|||+|||+|++|++
T Consensus 92 ~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~E~~ 165 (166)
T cd00870 92 PVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKVELE 165 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999975 678899999999999999999999999987
No 39
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=99.97 E-value=8.7e-31 Score=288.20 Aligned_cols=166 Identities=32% Similarity=0.484 Sum_probs=133.8
Q ss_pred HHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCch---hchHHHHHhCCCCCCCCHHHHHHhcCCCCCCCH
Q 000157 1482 LSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKAV---DEDSALLQQLPHWAACSITQALEFLTPAYKGHP 1558 (2015)
Q Consensus 1482 l~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~~---~e~~~~L~lL~~W~pi~p~~ALeLLs~~f~~~p 1558 (2015)
++.+.+.+|...++.++++++|+||+++.++|+|||+|+.+.+| +++.+++++|..|+|++|++||+||++.|+ |+
T Consensus 13 L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~-~~ 91 (184)
T PF00613_consen 13 LEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFP-DP 91 (184)
T ss_dssp HHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT----H
T ss_pred HHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhcc-HH
Confidence 33344555566899999999999999999999999999986554 466778999999999999999999999998 59
Q ss_pred HHHHHHHHHHhcCCChhHHhhHHHHHHHhccC--ChhHHHHHHHHHhhcCchhHHHHHhhhhcccccCCCCCcccccccc
Q 000157 1559 RVMAYILRVLESYPPERVTFFMPQLVQALRYD--DERLVEGYLLRATQRSDIFAHILIWHLQGETFVPESGKEKDANSVK 1636 (2015)
Q Consensus 1559 ~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE--~~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~~~~~~~~d~~~~k 1636 (2015)
.||+|||++|++++||++.+|||||||||||| ..+.+++||++||..|+.|||+|||+|++|++++.
T Consensus 92 ~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~----------- 160 (184)
T PF00613_consen 92 FVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE----------- 160 (184)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH-----------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc-----------
Confidence 99999999999999999999999999999999 67889999999999999999999999999996422
Q ss_pred cchHHHHHHHHHHHHhhcCCHHHHHH
Q 000157 1637 NGSFQTLLPMVRQRIIDGFNPKALDL 1662 (2015)
Q Consensus 1637 ~~rf~~~L~~l~~~il~~~s~~~~~~ 1662 (2015)
+...+..+.+.++++++.+.+++
T Consensus 161 ---~~~r~~~~~~~~l~~~~~~~~~~ 183 (184)
T PF00613_consen 161 ---YSERYQLLLEAFLDGCGTHMREL 183 (184)
T ss_dssp ---HHHHHHHHHHHHHHHSCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 12334444455566666555543
No 40
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=99.96 E-value=1e-29 Score=272.28 Aligned_cols=147 Identities=34% Similarity=0.565 Sum_probs=132.4
Q ss_pred HHhhChHHHHHHhhcCCCchhhhHHHHHHHHhChhhhccCCCchhhccccCc---hhchHHHHHhCCCCCCCCHHHHHHh
Q 000157 1473 AFQVDPRIALSLASRFPANASLKAEVTQLVQLHILDIRCIPEALPYFVTPKA---VDEDSALLQQLPHWAACSITQALEF 1549 (2015)
Q Consensus 1473 Aw~~~P~lal~l~~rfp~~~~L~~e~~~Lv~k~r~~l~~~PeAL~~~L~~~~---~~e~~~~L~lL~~W~pi~p~~ALeL 1549 (2015)
+|..+|..++....++ ..++.++++++|++|+++.+.|.+||+++.+.. .++..+++++|..|+|++|++||+|
T Consensus 1 ~~~~~~l~~i~~~~p~---~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~L 77 (152)
T cd00864 1 AWERKPLLAILLYPPF---STLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALEL 77 (152)
T ss_pred ChHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4667787776654444 468999999999999999999999999997654 4566678889999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCC--hhHHHHHHHHHhhcCchhHHHHHhhhhccccc
Q 000157 1550 LTPAYKGHPRVMAYILRVLESYPPERVTFFMPQLVQALRYDD--ERLVEGYLLRATQRSDIFAHILIWHLQGETFV 1623 (2015)
Q Consensus 1550 Ls~~f~~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~--~~lv~~FLl~rA~~s~~~aHql~W~Lkae~~~ 1623 (2015)
|++.|+ |+.||+|||++|++++||++.+||||||||||||. ++.+++||++||.+|+.|||+|||+|++|+++
T Consensus 78 L~~~~~-~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 78 LSPKYP-DPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred cCCcCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 999998 69999999999999999999999999999999998 78999999999999999999999999999873
No 41
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.88 E-value=6.5e-24 Score=290.17 Aligned_cols=245 Identities=23% Similarity=0.344 Sum_probs=203.9
Q ss_pred CCcccCCCCcceEEEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHH
Q 000157 1704 EDLYLPTAPNKLVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEA 1783 (2015)
Q Consensus 1704 ~~v~LP~nP~~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~ 1783 (2015)
++.|-|..|.+.|.++..+ ..++-| +++|.++..++.| |. .|.+..|.++|+|||+++||++.+|+.++..
T Consensus 1947 Pgty~~~~~~i~i~~f~~~-~~vits-kqRprkl~i~gs~--g~-----d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~ 2017 (2341)
T KOG0891|consen 1947 PGTYDPGKPIIRIQSFEPK-FNVITS-KQRPRKLVIRGSD--GK-----DYQYLLKGHEDLRQDERVMQLFGLVNTLLAN 2017 (2341)
T ss_pred CCccCCCceEEehhhccHH-HHHHHH-HhhhHHHhhcccc--hh-----hHHHHhhchhhhhhHHHHHHHHHHHHHHhcc
Confidence 4677777777888888766 345655 9999999999876 64 3789999999999999999999999999977
Q ss_pred cC----CceeEeeeEEEEccCCCceeEEecCchhhhhhhcc----------------------CCC-cHH---HHHHH--
Q 000157 1784 VG----LNLYLFPYGVLPTGPEKGIIEVVPNTRSRSQMGET----------------------TDG-GLY---EIFQQ-- 1831 (2015)
Q Consensus 1784 ~g----LDL~L~pY~Viptg~~~GlIE~Vpns~S~~qlgk~----------------------~~~-~L~---eyF~~-- 1831 (2015)
.. ..+.+..|.|+|.+++.|+|+||||+.+.+.+.+. +++ .+. +-|..
T Consensus 2018 d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~ 2097 (2341)
T KOG0891|consen 2018 DSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYAL 2097 (2341)
T ss_pred ChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHh
Confidence 53 67889999999999999999999999997765321 000 000 01111
Q ss_pred ------------hhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCcc
Q 000157 1832 ------------DFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMR 1898 (2015)
Q Consensus 1832 ------------~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~ 1898 (2015)
--+...++.|...|.||++|.|..|+++|++|+||||..|.|+|. +|+++|||||.+|+..+-....
T Consensus 2098 ~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~ 2177 (2341)
T KOG0891|consen 2098 SNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKF 2177 (2341)
T ss_pred hcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccc
Confidence 013456788999999999999999999999999999999999999 9999999999999998866557
Q ss_pred CCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCCC
Q 000157 1899 FESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPCFS 1962 (2015)
Q Consensus 1899 fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPcf~ 1962 (2015)
+|.+|||||+..++.|..+|-. +.|+..|.....++|.+-+..++..+.++..++-.++
T Consensus 2178 pe~~pfRlTrmli~amev~gl~-----g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr 2236 (2341)
T KOG0891|consen 2178 PEKVPFRLTRMLINAMEVTGIE-----GTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWR 2236 (2341)
T ss_pred cccccHHHHHHHHHhHHHHhhh-----hHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhh
Confidence 8999999999999999877653 4699999999999999999999999999887776554
No 42
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.00052 Score=98.69 Aligned_cols=186 Identities=18% Similarity=0.222 Sum_probs=142.4
Q ss_pred eccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHc----CCceeEeeeEEEEccCCC
Q 000157 1727 LQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAV----GLNLYLFPYGVLPTGPEK 1802 (2015)
Q Consensus 1727 l~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~----gLDL~L~pY~Viptg~~~ 1802 (2015)
+..+..+-.++..++.| |.. .+..+-.|.--+=|-+.+++|+++++|.++.+. ...+....-.++|.++..
T Consensus 3204 v~~~~~~~rRl~iRG~d--Gk~---~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~ 3278 (3550)
T KOG0889|consen 3204 VRGHGMSYRRLYIRGSD--GKI---YPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQM 3278 (3550)
T ss_pred hcccceeEEEEEEeccC--Cee---cceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCce
Confidence 34456677788888876 643 233566677678899999999999999999774 456778889999999999
Q ss_pred ceeEEecCchhhhhhhcc--------C-----------------------------------------CCcHHHHHHHhh
Q 000157 1803 GIIEVVPNTRSRSQMGET--------T-----------------------------------------DGGLYEIFQQDF 1833 (2015)
Q Consensus 1803 GlIE~Vpns~S~~qlgk~--------~-----------------------------------------~~~L~eyF~~~~ 1833 (2015)
-++|-.|++.+++++-+. . ...+++||.+.|
T Consensus 3279 rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf 3358 (3550)
T KOG0889|consen 3279 RLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTF 3358 (3550)
T ss_pred EEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhc
Confidence 999999999997765211 0 112456777777
Q ss_pred CCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc-CCcEEEEecccccccCCCCCccCCCCCccCcHHHHH
Q 000157 1834 GPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN-IGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQ 1912 (2015)
Q Consensus 1834 g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~-~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~ 1912 (2015)
+. ...|.--|++|+..+|..+.++|.+.++-|-.+-+++++ +|.++--||-+=-..+.+.--.-|++|||||+.+..
T Consensus 3359 ~~--~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~ 3436 (3550)
T KOG0889|consen 3359 TN--YSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQE 3436 (3550)
T ss_pred CC--hhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchh
Confidence 65 334566799999999999999999999999999999998 999998888654422221111348999999999999
Q ss_pred hhcCCCC
Q 000157 1913 LLDPSGV 1919 (2015)
Q Consensus 1913 vmg~~Gg 1919 (2015)
.+|..|.
T Consensus 3437 ~i~~~~v 3443 (3550)
T KOG0889|consen 3437 FIGDFGV 3443 (3550)
T ss_pred hhcchhh
Confidence 8865543
No 43
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=96.99 E-value=0.00091 Score=90.00 Aligned_cols=443 Identities=21% Similarity=0.165 Sum_probs=278.3
Q ss_pred hccccccchHHHHHHHHHhhhcc-ccccccCCCCCccccccChHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHhhhcCC
Q 000157 600 GLRNAKLRSDYRHRLLSLCSDVG-LAAESKSGRSGADFLGPLLPAVAAICSDFDPTVDVEPSLLKLFRNLWFYIALFGLA 678 (2015)
Q Consensus 600 ~l~~~~~~~~yL~~LLElfvq~G-l~~~~~s~ss~A~~Lg~LLppLA~Ll~~l~p~~~~~~~l~kLFRD~WFy~VVhGF~ 678 (2015)
.+.+...+.+|++.+|.+|+.++ ++.+..++...-+-++.|++-++.++...++.....+...++||.+|++.|+++-.
T Consensus 514 ~v~~~~~~~dy~hlsLali~a~~~iaa~~~~e~~k~~ll~~Llel~~~ig~~ge~~~~e~~~~~k~sr~a~~i~aLv~~i 593 (1803)
T KOG0902|consen 514 SVKSIMNTFDYRHLSLALIVAMCEIAAGEESEHFKSTLLMALLELFVQIGLEGETKDLESKSMLKVSRSAGNIGALVERI 593 (1803)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhhcCCccccccccHHHHHhhhhhhhhhhhhh
Confidence 33334555899999999999999 66665666666789999999999999987777666799999999999999999999
Q ss_pred CCCccCCCCcccccccccccCCCCccccccccCCCCCchhhHHHHHHHHhcCCCccccCcccchhhhhccccCCCCCc--
Q 000157 679 PPIQKTQPPVKSVSSTLNSVGSMGTIPLQAVTGPYMWNTQWSSAVQHIAQGTPPLVVSSVKWLEDELELNALHNPGSR-- 756 (2015)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~lWp~eW~~~l~~IA~kSPPLV~s~~~~lEseLElNti~n~~lR-- 756 (2015)
....+.-+|.|.....+++.+.+..+.++.+ |+ + -+. ..+| ..+|+.-+-..|-+-
T Consensus 594 a~l~~s~pPi~e~~p~~~~lfrd~wf~~vi~---gf-~---------------~~w--~e~w-~~~l~~iA~~TP~Lv~~ 651 (1803)
T KOG0902|consen 594 AALLRSTPPIKEDLPILKKLFRDFWFYLVIV---GF-S---------------GLW--PEEW-YNDLLEIATNTPPLVSE 651 (1803)
T ss_pred hcccccCCCcccccHHHHHHHHHHHHHHHHH---cC-C---------------CCC--chHH-HHHHHHHhcCCCceEec
Confidence 8888778899999999999999888888776 43 1 111 1122 223322111111111
Q ss_pred -CCCCchhhhHHHHHHHHHHcCCCccccccccccchhHHHHHHHHHHHHhhcccCCCCccCCccccccccccchhheecc
Q 000157 757 -RGSGNEKAAGTQRAALSAALGGRVEVAAMSTISGVKATYLLAVAFLEIIRFSSNGGILNGGTSLTAARSAFSCVFEYLK 835 (2015)
Q Consensus 757 -rgs~~e~~~~~qR~~L~~~L~~~~evs~i~~LS~~k~~yLlAV~~LEtLR~~s~~g~~~~~~~~~~~~~s~s~if~Yl~ 835 (2015)
-|.++ - ..+=+++++-=..++.++++ +..++.|++
T Consensus 652 ~~~~~~-~--~LelNa~lr~ds~~e~~st~-----------------------------------------~~~L~~~~~ 687 (1803)
T KOG0902|consen 652 DTGYNN-S--VLELNAALRQDSGSENISTQ-----------------------------------------KRELSHSLE 687 (1803)
T ss_pred ccCCcc-h--HHHHHHHHcCCCcchHHHHH-----------------------------------------HHHhccccc
Confidence 11111 0 11111111111111111111 233334444
Q ss_pred C--CCCc------------chHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhhHHHHHHHHHHHHHhhcc--------
Q 000157 836 T--PNLM------------PSVFQCLNAIVLRAFETAVSWLEERTAETGKEAEIKESTLFAHACFLIKSMSQ-------- 893 (2015)
Q Consensus 836 D--psi~------------~~~~~cm~aia~kvf~~fl~~l~~~~~~~~~~~~~~e~~l~~ha~fLLv~fnH-------- 893 (2015)
| +.+. --+...|+++.+.-|.+++-|.++..-.. ..-+..+-.-+-+.+-+|..
T Consensus 688 ~~~~~~n~ls~s~~tfLlaV~~lE~mR~l~~~~~s~~~~yfed~sl~~----s~~~qcl~aia~~~f~~~~~~~l~~~~~ 763 (1803)
T KOG0902|consen 688 DESALINRLSFSKITFLLAVRLLETMRCLSFIKFSATFEYFEDPSLRN----SGLLQCLHAIASRGFMKFVESSLFNKVR 763 (1803)
T ss_pred cchhhhhhchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcccccC----ccHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4 1111 12233344444445666777777664321 11122222222221111111
Q ss_pred ccHHHHHHHHHHHHHHHhccCccccCcCchhhhhcccccCCC-eeEecChhhHHHHHHHHHHHHHHHH-HHHhccCcHHH
Q 000157 894 REEHLRDTAVNLLTQLRDKFPQVLWHSSCLDSLLFSFDSDAS-SAVINDPAWVATVRSLYQRLVREWV-LTSLSYAPCTT 971 (2015)
Q Consensus 894 r~~~Iq~vAd~~ls~LI~~FPsLLW~~scLd~Ll~s~~~~s~-sv~l~d~~~r~tl~~ll~k~ak~Wv-~~AL~~AP~dt 971 (2015)
+.+.+-+=|++|+.. +.|+-+ .-.+.|..|..-++.+.++....|| ...+..++.--
T Consensus 764 ~e~~l~~haq~Ll~~---------------------f~h~~~~~r~vad~~~~~lV~siP~ll~~~~vL~tiL~~l~~l~ 822 (1803)
T KOG0902|consen 764 NERELKAHAQKLLLE---------------------FNHRFLAVRNVADICLSPLVRSIPSLLWVLYVLYTILSLLQELE 822 (1803)
T ss_pred hHHHHHHHHHHHHHH---------------------HhccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222223333332 233322 2345778899999999888788776 55699999999
Q ss_pred HHHHHHHHhhhcccccCCCchhhhhhhhheeeccCcCCCCCCccccchhHHHHHhhhhcCCCCCch--hhhhhcccccee
Q 000157 972 QGLLQDKLCKANNWQRAQPTTDMVSLLSEIRIGTCKNDCWPGIRTANIPAVTAAAAAASGATLKPA--EALEVLSTGIVS 1049 (2015)
Q Consensus 972 KsLLQeYLs~~~~~~~~~~t~d~~sL~~~i~lG~~k~~~~~G~~~~~v~~~~~s~~~~~~~~~~~s--~~l~~~s~~~~s 1049 (2015)
++++++-.++-+.+...+.+++++.+..+++-+.++...|++...+.++..|..+...++.+++.. +..+.+++....
T Consensus 823 ~~l~~d~~~k~P~~~~~~~~~~~V~l~d~~~~R~s~v~~f~~~~~~~i~~~~~~ap~~tk~nL~~yls~~~~~l~~~~~g 902 (1803)
T KOG0902|consen 823 DSLLVDLTCKEPQLVIKSSSIYTVRLLDSISTRESVVKDFSRRVKFWIQEALKAAPALTKSNLQSYLSDIEDGLRSVEDG 902 (1803)
T ss_pred HHhhcchhhcCcceeeccCCceEEEechhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHhhcceehhh
Confidence 999999999977776656666889999999988887777888877888888888877777776532 223455555566
Q ss_pred cccccchhhhhhhHHHhhhcccCccCCCCCCCCCCCCCCccccccccccCCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 000157 1050 ATVKCNHAGEIAGMRRLYNSIGGFQSGTMPTGSFGFGGGFQRLISGAFSQQPQTEDDSFNEMLLSKFVHLLQQFVNVAEK 1129 (2015)
Q Consensus 1050 ~~lrs~~Age~ag~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 1129 (2015)
+++....+|+++|-+ +-++....++.++ +.+.+......+.+++++...+.+++..++.++
T Consensus 903 ~s~aie~~~~i~~~~-----------------~S~ft~~yqr~is--~~~v~~~~s~~l~~~ii~~~~~~ie~~l~~~~~ 963 (1803)
T KOG0902|consen 903 LSLAIELIGEIAGSR-----------------SSEFTLSYQRSIS--FLQVNSLLSTALKDMIIESTLELIEQILNRLEK 963 (1803)
T ss_pred HHHHHHhhhcccCCC-----------------chhhhhccccchh--hhccCchhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777776422 1122222333333 445555555677889999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhhcc
Q 000157 1130 GGEVDKGQFRETCSQATALLLSN 1152 (2015)
Q Consensus 1130 ~~~~~~~~~r~~l~rAaALLi~~ 1152 (2015)
+.++.....+....+..|++..+
T Consensus 964 ~~e~~~~~~~~~~~~~~a~~ll~ 986 (1803)
T KOG0902|consen 964 KEEKILFMGGIHQRFQEAFVLLT 986 (1803)
T ss_pred hhHHHHhcCCccHHHHHHHHHHH
Confidence 98888888899999998888865
No 44
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=94.30 E-value=0.31 Score=60.51 Aligned_cols=257 Identities=17% Similarity=0.181 Sum_probs=155.5
Q ss_pred ceEEEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCC-ceeEee
Q 000157 1714 KLVRGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGL-NLYLFP 1792 (2015)
Q Consensus 1714 ~~V~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gL-DL~L~p 1792 (2015)
..|++|....|-.-.. .+...+++|. + | .++++|.. +++-|.....+++.++.- .+. ++.+..
T Consensus 43 ~~i~~I~~~~GD~H~~-Gr~V~~l~f~--~--g-------~kivYKPR-sl~~d~~f~~l~~~ln~~---~~~~~~~l~~ 106 (370)
T PF13575_consen 43 GKITSIEFGLGDTHNG-GRSVAILEFS--S--G-------KKIVYKPR-SLSIDKAFNDLLEWLNEK---NGTPSLDLPT 106 (370)
T ss_pred CCceEecCCCCCcCCC-CceEEEEEEC--C--C-------CEEEEeCc-ccHHHHHHHHHHHHHhhh---cccccccccc
Confidence 5688888766654332 4567777775 2 4 25899995 899999988888777753 222 356677
Q ss_pred eEEEEccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCce
Q 000157 1793 YGVLPTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNL 1872 (2015)
Q Consensus 1793 Y~Viptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNI 1872 (2015)
.+|+.-+.+.|..|+|++..-. + .+..++|-+-+.++..+.|+||..|=|.+||
T Consensus 107 ~~~l~~g~~YgW~EfI~~~~c~-----------------------~---~~ev~~yY~r~G~llal~y~L~~~DlH~ENI 160 (370)
T PF13575_consen 107 PKVLDRGDGYGWQEFIEHEPCN-----------------------S---EEEVERYYYRLGVLLALLYLLNGTDLHFENI 160 (370)
T ss_pred ceeeeccCcceeEEEecCCCCC-----------------------C---HHHHHHHHHHHHHHHHHHHHhCCCcccccce
Confidence 8999998889999999866421 0 1345566677789999999999999999999
Q ss_pred eEccCCcEEEEecccccccCCC---CCcc---------------C----------------------CCCCccC------
Q 000157 1873 LFDNIGRLVHIDFGFILETSPG---RNMR---------------F----------------------ESAHFKL------ 1906 (2015)
Q Consensus 1873 MId~~GhlfHIDFGfIfg~~Pg---gn~~---------------f----------------------E~vPFKL------ 1906 (2015)
.-+ .++-+=||.--+|...+. .+.. + ...||+.
T Consensus 161 Ia~-g~~PvlIDlETlf~~~~~~~~~~~~~~~~~~l~~SV~~tglLP~~~~~~~~~~d~s~l~~~~~~~~~~~~~~~~~~ 239 (370)
T PF13575_consen 161 IAS-GEYPVLIDLETLFHPVIRLDDDGSTADASAKLRDSVLSTGLLPSWIWGDKDGIDVSGLGGGEGQKIPFKVPVIKND 239 (370)
T ss_pred EEe-CCCcEEEehhhhCCccccCCCcccchhhHHhhhcchhheeecCchhccCCCCcccccccCCCCCcCCcceeecccC
Confidence 884 456777888887764211 0000 0 0111111
Q ss_pred -cHHHHHhh-cCC----CC--CC-ChhHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCC--CCCCch---HHHHHH
Q 000157 1907 -SHEMTQLL-DPS----GV--MK-SDTWNQFVSLCIKGYLAARRYMDGIINTVLLMLDSGLPC--FSRGDP---IGNLRK 1972 (2015)
Q Consensus 1907 -T~eMv~vm-g~~----Gg--~~-Se~f~~F~~lCv~aflaLRk~~~~Ii~L~~LMl~SgLPc--f~~~~~---I~~Lr~ 1972 (2015)
|.+|+.-= ... ++ .+ .+....|.+=+..+|..+.+|.+.+...+.-. .+++++ +- ..| -+-|+.
T Consensus 240 ~td~m~~~~~~~~~~~~~~~~~~~~~y~~~i~~GF~~~y~~i~~~k~~l~~~~~~~-f~~~~~R~i~-R~T~~Y~~lL~~ 317 (370)
T PF13575_consen 240 GTDEMIEYEEVRIEPKNNGKRIDPEDYIDDIIEGFREAYRFILKNKEELLEILLEA-FSNLKVRVIL-RPTQVYAQLLRA 317 (370)
T ss_pred CCceeeeccccccccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcEEEEE-ccHHHHHHHHHH
Confidence 22221000 000 00 00 12234566667788888999999987765443 233332 21 123 356788
Q ss_pred hcCCC-CCHH-HHHHHHHHHH---HHhhhChhHHHHHHHHHhhhCcCC
Q 000157 1973 RFHPE-MSDR-EAAIFMRNVC---TDAYNKWTTAGYDLIQYLQQGIEK 2015 (2015)
Q Consensus 1973 RF~l~-lSe~-EAa~~m~~lI---~~S~~s~~T~~YD~~Q~~~ngI~~ 2015 (2015)
..+|+ +.+. +....+.++. ......+.-..+..=|-++..||.
T Consensus 318 s~hP~~l~~~~~~~~~l~~l~~~~~~~~~~~~i~~~E~~~L~~~DIP~ 365 (370)
T PF13575_consen 318 STHPDYLRDGLDRERLLERLWRAYFSPPKNKKIVESEIAQLLNGDIPY 365 (370)
T ss_pred hcCchhhhChHHHHHHHHHHHhhcccccchhHHHHHHHHHHHcCCCCe
Confidence 88898 5544 3334455553 223335555555666666666773
No 45
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=80.82 E-value=9.6 Score=52.30 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=92.9
Q ss_pred EEeeccCceeeccCCCCcEEEEEEeecCCCCCCCCCcceeEeeeCCchhhHHHHHHHHHHHHHHHHHcCCceeEeeeEEE
Q 000157 1717 RGIRVDSGIPLQSAAKVPIMITFNVVDRDGDQSNVMPQACIFKVGDDCRQDVLALQVISLLRDIFEAVGLNLYLFPYGVL 1796 (2015)
Q Consensus 1717 ~gI~~es~~vl~Ssak~Pl~ltF~~~d~~G~~~~~~~~~~IfK~GDDLRQD~LaLQlI~lmd~I~~~~gLDL~L~pY~Vi 1796 (2015)
..|....|-.-.. .+.-.+++|. + | .++++|.- +++-|+...++++.++. .+....+...+|+
T Consensus 89 ~~i~~~~gD~H~~-g~~V~~l~f~--~--g-------~kivYKPr-~l~~d~~f~~~l~~ln~----~~~~~~~~~~~~l 151 (825)
T cd04792 89 ISIQLGLGDTHNG-GRVVAILTFS--S--G-------LKLVYKPR-SLSVDALFQELLEWLNS----FLGALPLRTPKVL 151 (825)
T ss_pred eeeecCCCCcCCC-CceEEEEEEC--C--C-------CEEEECCC-CchHHHHHHHHHHHHHh----cCCccccccceee
Confidence 4455444433322 3444555563 2 4 25899995 89999999999888874 2223344778888
Q ss_pred EccCCCceeEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEcc
Q 000157 1797 PTGPEKGIIEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDN 1876 (2015)
Q Consensus 1797 ptg~~~GlIE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~ 1876 (2015)
.-+ +.|..|+|+...-. + .+..++|-+-+..+..+.|+||.-|=|.+|| |..
T Consensus 152 ~~~-~ygw~EfI~~~~c~-----------------------~---~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~ 203 (825)
T cd04792 152 DRG-DYGWEEFIEHQPCQ-----------------------S---KEEVERYYYRLGGLLALLYLLNATDLHFENI-IAS 203 (825)
T ss_pred ecC-CcceEEeecCCCCC-----------------------C---HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eee
Confidence 766 68999999864310 0 1346677778889999999999999999999 777
Q ss_pred CCcEEEEecccccccC
Q 000157 1877 IGRLVHIDFGFILETS 1892 (2015)
Q Consensus 1877 ~GhlfHIDFGfIfg~~ 1892 (2015)
.++-+=||+--+|...
T Consensus 204 g~~PvlIDlETlf~~~ 219 (825)
T cd04792 204 GEYPVLIDLETLFHPR 219 (825)
T ss_pred CCCceEEeeHHhcCCC
Confidence 7889999998888653
No 46
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=77.48 E-value=1.8 Score=51.34 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCceeEeeeEEEEccC-CCceeE-EecCchhhhhhhccCCCcH-HHHHH--HhhCCCCChHHHHHHHHHHhhhhHHHHH
Q 000157 1784 VGLNLYLFPYGVLPTGP-EKGIIE-VVPNTRSRSQMGETTDGGL-YEIFQ--QDFGPVGSTSFEAARENFIISSAGYAVA 1858 (2015)
Q Consensus 1784 ~gLDL~L~pY~Viptg~-~~GlIE-~Vpns~S~~qlgk~~~~~L-~eyF~--~~~g~~~s~~f~~Ar~NFirS~AgYSV~ 1858 (2015)
+-+...+.|+.|+--|+ +.|+++ ||.+..+.+-+.-...+.+ -.|+. ..+...+... ......--.+.-.+|+
T Consensus 64 ~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v--~l~h~d~~~l~riaVf 141 (253)
T TIGR03843 64 EALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPV--VLVHADHPQLRRMAVF 141 (253)
T ss_pred HHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcce--eecccccHHHhhhhhh
Confidence 34557789999998766 567776 5555332111100000000 00110 0000010000 0011112234567889
Q ss_pred HHhhcCcCCCCCceeEccCCcEEEEecccccccCCC
Q 000157 1859 SLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPG 1894 (2015)
Q Consensus 1859 tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pg 1894 (2015)
=+++.=-|||.|||+..++|+++-||-|++|...|+
T Consensus 142 Di~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~k 177 (253)
T TIGR03843 142 DALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPK 177 (253)
T ss_pred eeeeecCCCCCCcEeEcCCCcEEEecCceecCCCCc
Confidence 999999999999999999999999999999987654
No 47
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=73.85 E-value=14 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.7
Q ss_pred cCCCCCceeEccCC----cEEEEecccccccC
Q 000157 1865 KDRHNGNLLFDNIG----RLVHIDFGFILETS 1892 (2015)
Q Consensus 1865 GDRHndNIMId~~G----hlfHIDFGfIfg~~ 1892 (2015)
+|=|.|||+++.+| +++=||||.+=.-+
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGivg~l~ 315 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIVGSLN 315 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence 89999999999988 99999999985433
No 48
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=68.54 E-value=3 Score=54.43 Aligned_cols=29 Identities=41% Similarity=0.761 Sum_probs=25.5
Q ss_pred cCCCCCceeEccCCcEEEEecccccccCC
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFILETSP 1893 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIfg~~P 1893 (2015)
+|=|.|||+++.+|+++-+|||.+=..+|
T Consensus 289 aDpHpGNi~v~~~g~i~~lDfGi~g~l~~ 317 (517)
T COG0661 289 ADPHPGNILVRSDGRIVLLDFGIVGRLDP 317 (517)
T ss_pred cCCCccceEEecCCcEEEEcCcceecCCH
Confidence 79999999999999999999999754443
No 49
>PRK14879 serine/threonine protein kinase; Provisional
Probab=54.81 E-value=35 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.8
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
||-|.+|||++ +|.+.=||||..-
T Consensus 119 ~Dl~p~Nil~~-~~~~~liDf~~a~ 142 (211)
T PRK14879 119 GDLTTSNMILS-GGKIYLIDFGLAE 142 (211)
T ss_pred CCCCcccEEEE-CCCEEEEECCccc
Confidence 89999999999 8999999999754
No 50
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=51.97 E-value=57 Score=38.01 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=62.1
Q ss_pred HcCCceeEee--eEEEEccCCCce-eEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHH
Q 000157 1783 AVGLNLYLFP--YGVLPTGPEKGI-IEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVAS 1859 (2015)
Q Consensus 1783 ~~gLDL~L~p--Y~Viptg~~~Gl-IE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~t 1859 (2015)
..+.+..-.| |.++.|+.+-|+ .|.|.|.. | ....+|.+|..+. .. +....++.+.|.+-+....|++
T Consensus 71 ~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~d-----G-~~s~TL~~~l~~~--~~-~~~~~~~L~~f~~~l~~~~Iv~ 141 (199)
T PF10707_consen 71 RRGVDWSHIPRFYGFVETNLGLGLVVELIRDAD-----G-NISPTLEDYLKEG--GL-TEELRQALDEFKRYLLDHHIVI 141 (199)
T ss_pred ccCCcccccccEeEEEecCCceEEEEEEEECCC-----C-CcCccHHHHHHcC--Cc-cHHHHHHHHHHHHHHHHcCCee
Confidence 4455544444 999999998887 57776653 1 1224577777432 22 3477889999999987777765
Q ss_pred HhhcCcCCCCCceeEcc--CC--cEEEEec
Q 000157 1860 LLLQPKDRHNGNLLFDN--IG--RLVHIDF 1885 (2015)
Q Consensus 1860 YILGIGDRHndNIMId~--~G--hlfHIDF 1885 (2015)
.|=+.+||++.. +| +++=||-
T Consensus 142 -----~dl~~~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 142 -----RDLNPHNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred -----cCCCcccEEEEecCCCceEEEEEeC
Confidence 488999999987 34 5888883
No 51
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=49.49 E-value=12 Score=48.15 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=24.2
Q ss_pred cCCCCCceeEccCCcEEEEeccccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIfg~ 1891 (2015)
+|=|.+|||++.+|++.=||||.+=..
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~~~l 307 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIVGRL 307 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCeeEC
Confidence 699999999999999999999987433
No 52
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=49.19 E-value=14 Score=48.83 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=29.1
Q ss_pred hhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1851 SSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1851 S~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
.||.=||--.=+==.|=-.||||||.+|||=--|||.|=|
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEccCCceeeeecccccc
Confidence 3455554322222357778999999999999999999975
No 53
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=47.87 E-value=11 Score=46.14 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.1
Q ss_pred HHHHHhhc----CcCCCCCceeEccCCcEEEEeccccc
Q 000157 1856 AVASLLLQ----PKDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1856 SV~tYILG----IGDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
|.+-|+=+ -.|--++|||||++|||==+||||.=
T Consensus 155 lAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK 192 (355)
T KOG0616|consen 155 LALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAK 192 (355)
T ss_pred HHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceE
Confidence 44445533 36888999999999999999999964
No 54
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=45.98 E-value=15 Score=39.43 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=22.8
Q ss_pred cCcCCCCCceeEccCCcEEEEeccccc
Q 000157 1863 QPKDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1863 GIGDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
-=||=|.+|||++ +|++.-||||+.-
T Consensus 110 ~HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 110 CHNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred ecCCCCcCcEEEE-CCeEEEEeccccc
Confidence 3399999999999 7899999999865
No 55
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=44.88 E-value=41 Score=37.46 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.0
Q ss_pred HhhcC--cCCCCCceeEccCCcEEEEecccc
Q 000157 1860 LLLQP--KDRHNGNLLFDNIGRLVHIDFGFI 1888 (2015)
Q Consensus 1860 YILGI--GDRHndNIMId~~GhlfHIDFGfI 1888 (2015)
+-.|+ ||=|.+|||++ +|++.-||||..
T Consensus 107 H~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 107 HKAGIVHGDLTTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred HHCCeecCCCCcceEEEE-CCcEEEEECCCC
Confidence 44565 89999999999 899999999964
No 56
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=42.17 E-value=16 Score=41.01 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.8
Q ss_pred hcC--cCCCCCceeEccCCcEEEEeccccc
Q 000157 1862 LQP--KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1862 LGI--GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
-|| +|=|++|||++ +|++.=||||+.-
T Consensus 137 ~givHrDlkP~NIll~-~~~~~liDFG~a~ 165 (190)
T cd05145 137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAV 165 (190)
T ss_pred CCEecCCCChhhEEEE-CCCEEEEEcccce
Confidence 454 89999999999 8999999999865
No 57
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.14 E-value=16 Score=43.43 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.9
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
||=|++|||++.+| +.=||||..=
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~~ 182 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGKR 182 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCcc
Confidence 79999999999999 9999998753
No 58
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=40.41 E-value=81 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHhhhhHHHHHHHhhcC--cCCCCCceeEccCC---cEEEEeccccc
Q 000157 1844 ARENFIISSAGYAVASLLLQP--KDRHNGNLLFDNIG---RLVHIDFGFIL 1889 (2015)
Q Consensus 1844 Ar~NFirS~AgYSV~tYILGI--GDRHndNIMId~~G---hlfHIDFGfIf 1889 (2015)
.++.+++.+|.+-.--+--|| ||=|..|||++.++ ++.=|||+-+-
T Consensus 119 ~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~ 169 (206)
T PF06293_consen 119 QRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR 169 (206)
T ss_pred hHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence 356777777777777777776 89999999999988 99999998654
No 59
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=36.47 E-value=20 Score=40.78 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.4
Q ss_pred cC--cCCCCCceeEccCCcEEEEeccccc
Q 000157 1863 QP--KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1863 GI--GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
|| ||=|++|||++ +|++.=||||..-
T Consensus 138 giiHrDlkP~NIli~-~~~v~LiDFG~a~ 165 (190)
T cd05147 138 RLVHADLSEYNLLYH-DGKLYIIDVSQSV 165 (190)
T ss_pred CcccCCCCHHHEEEE-CCcEEEEEccccc
Confidence 66 89999999998 6999999999865
No 60
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=36.02 E-value=67 Score=42.30 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=37.6
Q ss_pred HHHHHhhCCCCCCCCCch------HHHHHHhcC-CC--CCHHHHHHHHHHHHHHhhhChhHHHHHHHHH
Q 000157 1949 TVLLMLDSGLPCFSRGDP------IGNLRKRFH-PE--MSDREAAIFMRNVCTDAYNKWTTAGYDLIQY 2008 (2015)
Q Consensus 1949 L~~LMl~SgLPcf~~~~~------I~~Lr~RF~-l~--lSe~EAa~~m~~lI~~S~~s~~T~~YD~~Q~ 2008 (2015)
++++++ |-|-|....+ |.+-|.-+. |. ....||.+.+.+++-++-+...+++++.|..
T Consensus 378 myEmLv--GyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~d~~~RLG~~G~~EIK~ 444 (550)
T KOG0605|consen 378 MYEMLV--GYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLCDPENRLGSKGAEEIKK 444 (550)
T ss_pred HHHHHh--CCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhcCHHHhcCcccHHHHhc
Confidence 344444 7788854322 344444343 21 1236899999999999888888889988863
No 61
>PRK05231 homoserine kinase; Provisional
Probab=33.68 E-value=71 Score=38.63 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=45.2
Q ss_pred hcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHh
Q 000157 1862 LQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARR 1941 (2015)
Q Consensus 1862 LGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk 1941 (2015)
+==||=|.+|||++.++-.--|||+++=- +...++ |-.-+...+...++ .-...+...+.++|...|+
T Consensus 189 liHgD~~~~Nil~~~~~~~~iIDf~~~~~----~~~~~D-----lA~~~~~~~~~~~~---~~~~~~~~~~l~gY~~~~~ 256 (319)
T PRK05231 189 VIHADLFRDNVLFEGDRLSGFIDFYFACN----DKLLYD-----VAITLNDWCFEADG---SLDATKARALLAAYQSVRP 256 (319)
T ss_pred cCCCCCCCCcEEEECCceEEEEecccccC----CchHHH-----HHHHHHHHHccCCC---CcCHHHHHHHHHHHhhcCC
Confidence 33489999999998544346999998641 111222 22222222211111 1113577888899988887
Q ss_pred chhHHHHHHHHHh
Q 000157 1942 YMDGIINTVLLML 1954 (2015)
Q Consensus 1942 ~~~~Ii~L~~LMl 1954 (2015)
-.+.=+..+-.|+
T Consensus 257 Ls~~E~~~l~~~l 269 (319)
T PRK05231 257 LTAAERAALPVML 269 (319)
T ss_pred CCHHHHHHHHHHH
Confidence 6655444444443
No 62
>PRK11768 serine/threonine protein kinase; Provisional
Probab=33.25 E-value=72 Score=39.32 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=44.6
Q ss_pred HHhhcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHH
Q 000157 1859 SLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLA 1938 (2015)
Q Consensus 1859 tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~afla 1938 (2015)
.+.+==||=|.+|||++ +| +.-|||+.+- .+| ..+ ++...+. |... + -......+..+|..
T Consensus 195 ~~~liHgD~h~~NvL~~-d~-~~iIDFDd~~-~g~---~i~---------DLa~~l~--~~~~-~-~~~~~~~~l~GY~~ 255 (325)
T PRK11768 195 RLLRLHGDCHPGNILWR-DG-PHFVDLDDAR-MGP---AVQ---------DLWMLLS--GDRA-E-QLMQLETLLEGYEE 255 (325)
T ss_pred CccceecCCCchhcccc-CC-cEEEeCCCCC-CCC---HHH---------HHHHHhc--cCcc-h-hHHHHHHHHHHhhc
Confidence 45566799999999996 44 5569999875 111 111 2333332 2211 1 14567778888888
Q ss_pred HHhchhHHHHHHHH
Q 000157 1939 ARRYMDGIINTVLL 1952 (2015)
Q Consensus 1939 LRk~~~~Ii~L~~L 1952 (2015)
.|+-...=+.++..
T Consensus 256 ~r~l~~~e~~~l~~ 269 (325)
T PRK11768 256 FCEFDPRELALIEP 269 (325)
T ss_pred cCCCCHHHHHHHHH
Confidence 88755554444443
No 63
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=33.11 E-value=63 Score=38.48 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=23.6
Q ss_pred hcCcCCCCCceeEccCCcEEEEeccccc
Q 000157 1862 LQPKDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1862 LGIGDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+==||-|.+|||++.++-.--|||+++-
T Consensus 177 l~HgD~~~~Nil~~~~~~~~iIDfe~a~ 204 (296)
T cd05153 177 VIHADLFRDNVLFDGDELSGVIDFYFAC 204 (296)
T ss_pred CCccCcCcccEEEeCCceEEEeehhhhc
Confidence 3459999999999997767799998865
No 64
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=32.99 E-value=1.2e+02 Score=38.86 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.3
Q ss_pred hcCcCCCCCceeEccCCcEEEEecccccc
Q 000157 1862 LQPKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1862 LGIGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
|=-||=|.+|||+++++ .+=|||-|.+-
T Consensus 194 llHGDl~~gNi~~~~~~-~~~iD~e~~~~ 221 (370)
T TIGR01767 194 LLHGDLHSGSIFVSEHE-TKVIDPEFAFY 221 (370)
T ss_pred eeeccCCcccEEEcCCC-CEEEcCccccc
Confidence 34699999999998765 77999998873
No 65
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=31.52 E-value=40 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.2
Q ss_pred cCCCCCceeEccCCcEEEEeccccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIfg~ 1891 (2015)
||=|.+||||+++|.+.=||||.+...
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~ 175 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVST 175 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccC
Confidence 588999999999999999999998644
No 66
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=30.96 E-value=89 Score=36.07 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=23.6
Q ss_pred cCCCCCceeEccCCcEEEEecccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
+|=+.+||+++.+|.+.-+|||....
T Consensus 124 ~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 124 SDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred ccccHhheEecCCCcEEEeccccccc
Confidence 78889999999999999999998754
No 67
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=30.74 E-value=7.9e+02 Score=27.39 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=36.6
Q ss_pred hcCcCCCCCceeEccCCcEEEEecccccccCCCC-CccCCCCCccCcHHHHH
Q 000157 1862 LQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGR-NMRFESAHFKLSHEMTQ 1912 (2015)
Q Consensus 1862 LGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pgg-n~~fE~vPFKLT~eMv~ 1912 (2015)
+--||-+.+||+++.+|.+.=+|||+.....++. ...+...+.-+.+|++.
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~ 170 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVIN 170 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHc
Confidence 5568999999999999999999999987655432 11222334456788764
No 68
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=29.08 E-value=71 Score=26.23 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHhc
Q 000157 886 FLIKSMSQREEHLRDTAVNLLTQLRDK 912 (2015)
Q Consensus 886 fLLv~fnHr~~~Iq~vAd~~ls~LI~~ 912 (2015)
.++-.+++...+||+.|..|+..|.+.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 466778899999999999999998864
No 69
>PRK10345 hypothetical protein; Provisional
Probab=28.92 E-value=91 Score=36.46 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred eEeeeEEEEccCCCce-eEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChH---HHHHHHHHHhhhhHHHHHHHhhcC
Q 000157 1789 YLFPYGVLPTGPEKGI-IEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTS---FEAARENFIISSAGYAVASLLLQP 1864 (2015)
Q Consensus 1789 ~L~pY~Viptg~~~Gl-IE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~---f~~Ar~NFirS~AgYSV~tYILGI 1864 (2015)
=+..|.++-|+.+.|. .|.|-+-. | ...++|.+++.+. .. ++. +.++...|. .|+--.-|+ .
T Consensus 63 Ivr~yg~~et~~g~g~v~~~I~e~~-----G-~~~~tL~~~l~~~--~~-~e~~~~~~~~L~~l~----~yLh~~~Iv-h 128 (210)
T PRK10345 63 IPRYYGTVETDCGTGYVYDVIADFD-----G-KPSITLTEFAEQC--RY-EEDVAQLRQLLKKLK----RYLLDNRIV-T 128 (210)
T ss_pred cceeeEEEEeCCCCeEEEEEEecCC-----C-CcchhHHHHHHcc--cc-cHhHHHHHHHHHHHH----HHHHHCCEe-e
Confidence 3667999999887787 56665421 1 1134677777542 11 111 122222221 222222222 5
Q ss_pred cCCCCCceeEccC----CcEEEEec
Q 000157 1865 KDRHNGNLLFDNI----GRLVHIDF 1885 (2015)
Q Consensus 1865 GDRHndNIMId~~----GhlfHIDF 1885 (2015)
.|=..+|||+++. ++++=|||
T Consensus 129 rDlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 129 MELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred cCCCHHHEEEeccCCCCCcEEEEEC
Confidence 7888999999863 38999995
No 70
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=28.75 E-value=37 Score=39.79 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.7
Q ss_pred CcCCCCCceeEccCCcEEEEecccc
Q 000157 1864 PKDRHNGNLLFDNIGRLVHIDFGFI 1888 (2015)
Q Consensus 1864 IGDRHndNIMId~~GhlfHIDFGfI 1888 (2015)
=||=|.+|||++++| +.=|||++.
T Consensus 157 HgD~~~~Nii~~~~~-~~iIDwe~a 180 (226)
T TIGR02172 157 HGDFQIGNLITSGKG-TYWIDLGDF 180 (226)
T ss_pred ecCCCCCcEEEcCCC-cEEEechhc
Confidence 688899999999988 889999885
No 71
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=28.73 E-value=3e+02 Score=31.68 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=23.1
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+|-+.+|||++++|.+.=+|||..-
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~~ 150 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLAR 150 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccce
Confidence 7889999999999999999999874
No 72
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=28.30 E-value=28 Score=43.63 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=27.5
Q ss_pred HHHHHhhcC----cCCCCCceeEccCCcEEEEeccccc
Q 000157 1856 AVASLLLQP----KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1856 SV~tYILGI----GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+.+.|+=.. +|=-++|||||.+||+.-.|||.+=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence 445555433 5888999999999999999999985
No 73
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=28.26 E-value=41 Score=40.31 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=26.2
Q ss_pred HHhhcCcCCCCCceeEccC----CcEEEEeccccc
Q 000157 1859 SLLLQPKDRHNGNLLFDNI----GRLVHIDFGFIL 1889 (2015)
Q Consensus 1859 tYILGIGDRHndNIMId~~----GhlfHIDFGfIf 1889 (2015)
.+++==||=|.+|||++.+ |.+.-|||.|.=
T Consensus 178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~ 212 (302)
T cd05156 178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS 212 (302)
T ss_pred CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence 4456668999999999985 999999999865
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.99 E-value=66 Score=31.12 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhcCCChhHHhhHHHHHHHhccCChhHHH
Q 000157 1556 GHPRVMAYILRVLESYPPERVTFFMPQLVQALRYDDERLVE 1596 (2015)
Q Consensus 1556 ~~p~VRqYAVr~Le~~~dd~L~~YLpQLVQALRyE~~~lv~ 1596 (2015)
+++.||..|+..|..+.+++ .+++|++.++-++...++
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDDDDEVVR 80 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-SSHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCCCcHHHH
Confidence 36788888888888876443 677777777776554443
No 75
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=27.97 E-value=7.8e+02 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.8
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
||=..+||||+.+|.+.=+|||+.-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5666899999999999999999864
No 76
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=27.89 E-value=1.1e+02 Score=37.02 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=45.6
Q ss_pred hcCcCCCCCceeEccCCcEEEEecccccccCCCCCccCCCCCccCcHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHh
Q 000157 1862 LQPKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMRFESAHFKLSHEMTQLLDPSGVMKSDTWNQFVSLCIKGYLAARR 1941 (2015)
Q Consensus 1862 LGIGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~fE~vPFKLT~eMv~vmg~~Gg~~Se~f~~F~~lCv~aflaLRk 1941 (2015)
+==||=|.+||+++.+|...-|||+++= + +...+|.+-+ +...+.... ..-...+...+.++|...|+
T Consensus 189 l~HgD~~~~Nvl~~~~~~~~vIDfd~~~---~-~~~~~DLA~~-----~~~~~~~~~---~~~~~~~~~~~l~gY~~~~~ 256 (307)
T TIGR00938 189 VIHADLFPDNVLFDGDSVKGVIDFYFAC---T-DARAYDLAIT-----VNAWCFDAD---DHFDADHAKALIKGYHQSRP 256 (307)
T ss_pred cCCCCCCcCcEEEECCceEEEeeccccc---C-cchHHHHHHH-----HHHHHcCCC---CCCCHHHHHHHHHHHHhcCC
Confidence 4448999999999998877899999863 1 1122333211 211221111 11113466777888887776
Q ss_pred chhHHHHHHHHH
Q 000157 1942 YMDGIINTVLLM 1953 (2015)
Q Consensus 1942 ~~~~Ii~L~~LM 1953 (2015)
-.+.=+..+..+
T Consensus 257 Ls~~e~~~l~~~ 268 (307)
T TIGR00938 257 LTEEEKAAFPVL 268 (307)
T ss_pred CCHHHHHHHHHH
Confidence 665544444433
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.65 E-value=94 Score=44.30 Aligned_cols=125 Identities=22% Similarity=0.289 Sum_probs=72.3
Q ss_pred cCCCCCceeEccCCcEEEEecccccccCCCCCcc---CCCCCccCcHHHHHhhcCC-CCCCChhHHHHHHHHHHHHHHHH
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFILETSPGRNMR---FESAHFKLSHEMTQLLDPS-GVMKSDTWNQFVSLCIKGYLAAR 1940 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~~---fE~vPFKLT~eMv~vmg~~-Gg~~Se~f~~F~~lCv~aflaLR 1940 (2015)
.|=-+||||||..|||=-.|||-|+-....|.+. .--.|=-++||+...||+. |--+-+ . .|-.+-+-.|.
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~e-c-DwWSlGV~~YE--- 273 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRE-C-DWWSLGVFMYE--- 273 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCc-c-chhhhHHHHHH---
Confidence 5778999999999999999999999766445342 1123556899999999753 211111 1 13344444444
Q ss_pred hchhHHHHHHHHHhhCCCCCCCC--Cc---hHHHHHHhcC-CCCC--HHHHHHHHHHHHHHhhhChhHHHHHHH
Q 000157 1941 RYMDGIINTVLLMLDSGLPCFSR--GD---PIGNLRKRFH-PEMS--DREAAIFMRNVCTDAYNKWTTAGYDLI 2006 (2015)
Q Consensus 1941 k~~~~Ii~L~~LMl~SgLPcf~~--~~---~I~~Lr~RF~-l~lS--e~EAa~~m~~lI~~S~~s~~T~~YD~~ 2006 (2015)
|+..--|=... .+ -|-+-+++|. |+.+ .++|.+.++++|-+.-....-.+|+.|
T Consensus 274 ------------MlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~~~e~RLgrngiedi 335 (1317)
T KOG0612|consen 274 ------------MLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLCDREVRLGRNGIEDI 335 (1317)
T ss_pred ------------HHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhcChhhhcccccHHHH
Confidence 33322332210 01 1344466664 3222 356778888887765544444445544
No 78
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=27.25 E-value=2.2e+02 Score=37.04 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=55.6
Q ss_pred HHHHHcCCceeEeeeEEEEccCCCce-eEEecCchhhhhhhccCCCcHHHHHHHhhCC---CCChHHHHHHHHHHhhhhH
Q 000157 1779 DIFEAVGLNLYLFPYGVLPTGPEKGI-IEVVPNTRSRSQMGETTDGGLYEIFQQDFGP---VGSTSFEAARENFIISSAG 1854 (2015)
Q Consensus 1779 ~I~~~~gLDL~L~pY~Viptg~~~Gl-IE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~---~~s~~f~~Ar~NFirS~Ag 1854 (2015)
.|++.-.-.+--+-|..+-+..-.++ ||+.|+-. |+-..+++-|. +....|+.| - .
T Consensus 129 eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGd------------L~~LrqkQp~~~fse~~aRFYaA------E--v 188 (459)
T KOG0610|consen 129 EILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGD------------LHSLRQKQPGKRFSESAARFYAA------E--V 188 (459)
T ss_pred HHHHhcCCCccchhhheeeccceeEEEEecCCCcc------------HHHHHhhCCCCccchhhHHHHHH------H--H
Confidence 35555455566666888888776554 78877654 33222222221 111122211 1 1
Q ss_pred HHHHH--HhhcC--cCCCCCceeEccCCcEEEEeccccccc
Q 000157 1855 YAVAS--LLLQP--KDRHNGNLLFDNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1855 YSV~t--YILGI--GDRHndNIMId~~GhlfHIDFGfIfg~ 1891 (2015)
-+..= +.||| .|--.+||||.++|||.-.||-..+-.
T Consensus 189 l~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~ 229 (459)
T KOG0610|consen 189 LLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC 229 (459)
T ss_pred HHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence 12222 45776 588899999999999999999988754
No 79
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=27.25 E-value=1.7e+02 Score=34.97 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred HhhcCcCCCCCceeEccCCcEEEEeccccc
Q 000157 1860 LLLQPKDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1860 YILGIGDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+.+--||=|.+|||++. |++.-|||+.+-
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~ 215 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT 215 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence 45567999999999998 789999999764
No 80
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=26.19 E-value=43 Score=36.77 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcCCCCCceeEccCCcEEEEeccccc
Q 000157 1864 PKDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1864 IGDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
=||=|.+|||++ +|.+.=||||..-
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~ 162 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAV 162 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECcccc
Confidence 579999999999 9999999999875
No 81
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=25.98 E-value=48 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.7
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+|=+.+|||++.+|++.=||||..-
T Consensus 166 rDlkp~NILv~~~~~v~LIDfg~~~ 190 (239)
T PRK01723 166 ADLNAHNILLDPDGKFWLIDFDRGE 190 (239)
T ss_pred CCCCchhEEEcCCCCEEEEECCCcc
Confidence 6999999999999999999999754
No 82
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=25.79 E-value=39 Score=37.62 Aligned_cols=31 Identities=39% Similarity=0.434 Sum_probs=20.9
Q ss_pred HHhhcCcCCCCCceeEc-cCCcEEEEeccccc
Q 000157 1859 SLLLQPKDRHNGNLLFD-NIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1859 tYILGIGDRHndNIMId-~~GhlfHIDFGfIf 1889 (2015)
.+.+-=||=|.+|||++ .+|++--|||++.-
T Consensus 165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~ 196 (239)
T PF01636_consen 165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG 196 (239)
T ss_dssp CEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred CcEEEEeccccccceeeeccceeEEEecccce
Confidence 35566699999999999 57777689998864
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.65 E-value=41 Score=42.85 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=55.3
Q ss_pred HHcCCceeEeeeEEEEccCCCceeEEecCc-hhhhhh---hccCCCcHHHHHHHhhCCCCCh--HHHHHHHHHHhhhhHH
Q 000157 1782 EAVGLNLYLFPYGVLPTGPEKGIIEVVPNT-RSRSQM---GETTDGGLYEIFQQDFGPVGST--SFEAARENFIISSAGY 1855 (2015)
Q Consensus 1782 ~~~gLDL~L~pY~Viptg~~~GlIE~Vpns-~S~~ql---gk~~~~~L~eyF~~~~g~~~s~--~f~~Ar~NFirS~AgY 1855 (2015)
+...+++.|.--+|+|++..--+.--+..+ .|.+.+ -+...|+=..|-.+++|....+ .|+. |--
T Consensus 389 QdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYA---------aEi 459 (683)
T KOG0696|consen 389 QDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYA---------AEI 459 (683)
T ss_pred ecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHhcccCCchhhhhh---------HHH
Confidence 345677778888888887543321110000 111111 0111233334555666643221 2221 223
Q ss_pred HHHHHhhcC-----cCCCCCceeEccCCcEEEEeccccccc
Q 000157 1856 AVASLLLQP-----KDRHNGNLLFDNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1856 SV~tYILGI-----GDRHndNIMId~~GhlfHIDFGfIfg~ 1891 (2015)
++.-|.|.- .|--+||+|+|.+||+=-.|||++=+.
T Consensus 460 aigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEn 500 (683)
T KOG0696|consen 460 AIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 500 (683)
T ss_pred HHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccccc
Confidence 444455542 578899999999999999999998654
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=24.20 E-value=3.9e+02 Score=36.00 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=81.1
Q ss_pred hhcchhhHHHhhhhhhhhhHHHhhhhcCchhhhhhcccchHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHhhcccCCc
Q 000157 377 VWRKLRVCEELFSSLLAGIAQIAVIRGGQPLRVLLIRLKPLVLTACAQGDTWGSSKGAMFETVMKTSCEIIESGWTKDRA 456 (2015)
Q Consensus 377 ~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~lr~fl~~~~p~~~~~~~~~~~~~~~~~~~~e~~~~~~c~~l~~~~~~d~~ 456 (2015)
.|||..+.+.+.+. +....+.+-.|-...---|.+...+.+.-.+ +|-+.-.+|---++.-++
T Consensus 471 sw~~~nlv~h~a~a---------~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n--------~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 471 SWRKENLVDHIAKA---------VREVESFLAKFYLAILNALVKGTELALNESN--------LRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHHhHHHhhhhh---------hccccchhHHHHHHHHHHHHHHHHhhccchh--------HHHHHHHHHHHHHhhcch
Confidence 49998888884322 3223334444433322223333334332222 344444455555566688
Q ss_pred hHHHHHHhhhHHHhhccchhHHhhh------hccccchhhhhHHHHhhceeeeec-c-hhhhhhHHHHHHHhhhc
Q 000157 457 PVDTFIMGLATSIRERNDYDEQVEK------EKQAVPAVQLNVIRLLADLTVAVN-K-SEVVDMILPLFIESLEE 523 (2015)
Q Consensus 457 ~v~a~l~~l~~~~~~~~~~~e~~~~------e~~~~~lv~~N~I~~lg~i~v~l~-~-~~~~~~il~~f~q~~~~ 523 (2015)
.|---++++..++..|++..-+..+ |...+.-++.|.|-.|.-|--.-. | ..+.|+++-+|++-+++
T Consensus 534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les 608 (858)
T COG5215 534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILES 608 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhc
Confidence 8999999999998888886433333 222256788999998887766655 4 56779999999999975
No 85
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=23.82 E-value=1.1e+03 Score=26.71 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=32.2
Q ss_pred CcCCCCCceeEccCCcEEEEecccccccCCCCCc--cCCCCCccCcHHHH
Q 000157 1864 PKDRHNGNLLFDNIGRLVHIDFGFILETSPGRNM--RFESAHFKLSHEMT 1911 (2015)
Q Consensus 1864 IGDRHndNIMId~~GhlfHIDFGfIfg~~Pggn~--~fE~vPFKLT~eMv 1911 (2015)
-||=|.+||+++.+|++.=+|||..-........ ..-..+.-..+|++
T Consensus 133 h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~ 182 (265)
T cd08217 133 HRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQL 182 (265)
T ss_pred ecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhh
Confidence 4788899999999999999999987654322110 01123445667775
No 86
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.52 E-value=39 Score=42.00 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhHHHHHHHhhc----CcCCCCCceeEccCCcEEEEecccccc
Q 000157 1842 EAARENFIISSAGYAVASLLLQ----PKDRHNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1842 ~~Ar~NFirS~AgYSV~tYILG----IGDRHndNIMId~~GhlfHIDFGfIfg 1890 (2015)
.+.|.+|--+ --.+..+|+-. -.|-.++|+|+|++|||=--|||.|=+
T Consensus 266 sE~RtRFYGa-EIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE 317 (516)
T KOG0690|consen 266 SEDRTRFYGA-EIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKE 317 (516)
T ss_pred cchhhhhhhH-HHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchh
Confidence 3445555322 12344455432 368889999999999999999999965
No 87
>PRK12274 serine/threonine protein kinase; Provisional
Probab=23.36 E-value=68 Score=38.13 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.7
Q ss_pred HhhcC--cCC-CCCceeEccCCcEEEEecccccc
Q 000157 1860 LLLQP--KDR-HNGNLLFDNIGRLVHIDFGFILE 1890 (2015)
Q Consensus 1860 YILGI--GDR-HndNIMId~~GhlfHIDFGfIfg 1890 (2015)
+=.|| +|= ..+|||++.+|++.=||||..--
T Consensus 108 H~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~ 141 (218)
T PRK12274 108 HRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVR 141 (218)
T ss_pred HHCcCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence 44566 787 47899999999999999999763
No 88
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=22.70 E-value=61 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=23.6
Q ss_pred HhhcCcCCCCCceeEcc--CCcEEEEeccccc
Q 000157 1860 LLLQPKDRHNGNLLFDN--IGRLVHIDFGFIL 1889 (2015)
Q Consensus 1860 YILGIGDRHndNIMId~--~GhlfHIDFGfIf 1889 (2015)
+.+==||=|.+|||++. +|.+.=|||+..-
T Consensus 174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~ 205 (223)
T cd05154 174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT 205 (223)
T ss_pred cEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence 34445899999999999 5656779998764
No 89
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=21.94 E-value=55 Score=43.71 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=24.5
Q ss_pred CcCCCCCceeE-ccCCcEEEEeccccccc
Q 000157 1864 PKDRHNGNLLF-DNIGRLVHIDFGFILET 1891 (2015)
Q Consensus 1864 IGDRHndNIMI-d~~GhlfHIDFGfIfg~ 1891 (2015)
.+|-|.+|||+ +..|||-=+||||-=+.
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhC
Confidence 58999999999 57999999999996543
No 90
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=21.68 E-value=5.3e+02 Score=29.60 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.9
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
+|=+.+|||++.+|++.=+|||+.-
T Consensus 126 ~di~p~Nili~~~~~~~l~dfg~~~ 150 (260)
T cd05070 126 RDLRSANILVGDGLVCKIADFGLAR 150 (260)
T ss_pred CCCccceEEEeCCceEEeCCceeee
Confidence 7888999999999999999999875
No 91
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=21.59 E-value=1.2e+03 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.9
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
||-+.+|||++.+|++.=+|||..-
T Consensus 126 ~di~p~nil~~~~~~~~l~df~~~~ 150 (257)
T cd08223 126 RDLKTQNVFLTRTNIIKVGDLGIAR 150 (257)
T ss_pred cCCCchhEEEecCCcEEEecccceE
Confidence 7889999999999999999999763
No 92
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.49 E-value=2.8e+02 Score=35.23 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=65.1
Q ss_pred eeEeeeEEEEccCCCce-eEEecCchhhhhhhccCCCcHHHHHHHhhCCCCChHHHHHHHHHHhhhhHHHHHHHhhcC--
Q 000157 1788 LYLFPYGVLPTGPEKGI-IEVVPNTRSRSQMGETTDGGLYEIFQQDFGPVGSTSFEAARENFIISSAGYAVASLLLQP-- 1864 (2015)
Q Consensus 1788 L~L~pY~Viptg~~~Gl-IE~Vpns~S~~qlgk~~~~~L~eyF~~~~g~~~s~~f~~Ar~NFirS~AgYSV~tYILGI-- 1864 (2015)
--+..|.|++|....-+ .|.++ .|.|++|+.+ -|.... .+|+.-|-.=+.|..- ++-.||
T Consensus 81 nI~~l~ev~~t~~~~~ivmEy~~------------gGdL~~~i~~-~g~l~E---~~ar~~F~Qlisav~y-~H~~gi~H 143 (370)
T KOG0583|consen 81 NIIRLLEVFATPTKIYIVMEYCS------------GGDLFDYIVN-KGRLKE---DEARKYFRQLISAVAY-CHSRGIVH 143 (370)
T ss_pred CEeEEEEEEecCCeEEEEEEecC------------CccHHHHHHH-cCCCCh---HHHHHHHHHHHHHHHH-HHhCCEee
Confidence 44678999998766222 34422 2568999888 454432 4677777554444332 333455
Q ss_pred cCCCCCceeEccC-CcEEEEeccccccc-CCCCCc-cCCCCCccCcHHHHH
Q 000157 1865 KDRHNGNLLFDNI-GRLVHIDFGFILET-SPGRNM-RFESAHFKLSHEMTQ 1912 (2015)
Q Consensus 1865 GDRHndNIMId~~-GhlfHIDFGfIfg~-~Pggn~-~fE~vPFKLT~eMv~ 1912 (2015)
+|==++|||+|.+ |++.=+|||+-=-. .+++.. .+--.|-=-.+|.+.
T Consensus 144 RDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~ 194 (370)
T KOG0583|consen 144 RDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLS 194 (370)
T ss_pred CCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhC
Confidence 5557899999998 99999999986322 232222 122334445566653
No 93
>PRK10271 thiK thiamine kinase; Provisional
Probab=21.02 E-value=70 Score=37.14 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHhhcCcCCCCCceeEccCCcEEEEecccccccCC
Q 000157 1839 TSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNIGRLVHIDFGFILETSP 1893 (2015)
Q Consensus 1839 ~~f~~Ar~NFirS~AgYSV~tYILGIGDRHndNIMId~~GhlfHIDFGfIfg~~P 1893 (2015)
..|......|...... +-+...+-=||=|.+||+++.+| +.=|||++.=..+|
T Consensus 57 ~~wl~~~~~~~~~~~~-~~l~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp 109 (188)
T PRK10271 57 PFWLRMLKRLRKAGEP-RPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI 109 (188)
T ss_pred HHHHHHHHHHHhcccC-CCCCeeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence 4555555555443222 22245667799999999998888 88999999765555
No 94
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=20.98 E-value=69 Score=38.30 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=19.8
Q ss_pred CcCCCCCceeEccCCcEEEEeccc
Q 000157 1864 PKDRHNGNLLFDNIGRLVHIDFGF 1887 (2015)
Q Consensus 1864 IGDRHndNIMId~~GhlfHIDFGf 1887 (2015)
=||=|.+|+|++++| +.-|||+-
T Consensus 158 HGD~hpgNFlv~~~~-i~iID~~~ 180 (229)
T PF06176_consen 158 HGDPHPGNFLVSNNG-IRIIDTQG 180 (229)
T ss_pred cCCCCcCcEEEECCc-EEEEECcc
Confidence 399999999999655 99999965
No 95
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=20.34 E-value=81 Score=32.09 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCCCCceeEccCCcEEEEeccccc
Q 000157 1865 KDRHNGNLLFDNIGRLVHIDFGFIL 1889 (2015)
Q Consensus 1865 GDRHndNIMId~~GhlfHIDFGfIf 1889 (2015)
||=|.+|||++++|.+.=||||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999999765
No 96
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=20.21 E-value=51 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred cccChHHHHHhcCCCCCCCCCChhHHHHHHHHHHHHhh--hcCC
Q 000157 637 LGPLLPAVAAICSDFDPTVDVEPSLLKLFRNLWFYIAL--FGLA 678 (2015)
Q Consensus 637 Lg~LLppLA~Ll~~l~p~~~~~~~l~kLFRD~WFy~VV--hGF~ 678 (2015)
++.++||+|+++++---. +|+|.|+.+ .||-
T Consensus 11 laiflPP~~VfL~~G~~~-----------~df~iNiLLtlLg~~ 43 (56)
T COG0401 11 LAIFLPPLGVFLRRGFGG-----------KDFLINILLTLLGYI 43 (56)
T ss_pred HHHHcCchhhhhhccCCc-----------HHHHHHHHHHHHHhh
Confidence 578899999999874322 799999865 4543
Done!