Query 000158
Match_columns 2014
No_of_seqs 334 out of 583
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 5.7E-26 1.9E-30 213.2 4.9 72 114-185 3-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 5.5E-25 1.9E-29 209.4 6.0 73 113-185 6-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 1.2E-09 4.1E-14 106.7 6.2 81 869-953 13-96 (100)
4 2doa_A RNA polymerase II elong 98.8 2.9E-09 9.8E-14 105.0 5.6 81 869-953 12-95 (104)
5 2ct0_A Non-SMC element 1 homol 86.6 0.095 3.2E-06 49.5 -0.9 16 1430-1445 33-48 (74)
6 2kiz_A E3 ubiquitin-protein li 84.3 0.43 1.5E-05 43.7 2.3 37 1426-1484 30-66 (69)
7 1v87_A Deltex protein 2; ring- 84.1 0.21 7.3E-06 50.6 0.2 37 1428-1481 58-94 (114)
8 2ecm_A Ring finger and CHY zin 83.0 0.29 1E-05 42.6 0.6 19 1427-1445 23-41 (55)
9 2ea6_A Ring finger protein 4; 81.7 0.39 1.3E-05 43.7 0.9 19 1427-1445 36-54 (69)
10 2ct2_A Tripartite motif protei 81.6 0.44 1.5E-05 45.7 1.3 32 1428-1478 34-65 (88)
11 2xeu_A Ring finger protein 4; 81.5 0.3 1E-05 43.7 0.1 19 1427-1445 24-42 (64)
12 3ng2_A RNF4, snurf, ring finge 81.2 0.41 1.4E-05 43.9 0.9 19 1427-1445 31-49 (71)
13 1bby_A RAP30; average structur 81.1 0.35 1.2E-05 44.9 0.4 43 884-930 24-66 (69)
14 2ecv_A Tripartite motif-contai 80.1 0.65 2.2E-05 43.9 2.0 36 1428-1479 34-69 (85)
15 1x4j_A Ring finger protein 38; 79.4 0.29 9.9E-06 45.8 -0.8 17 1428-1444 41-57 (75)
16 1chc_A Equine herpes virus-1 r 79.1 0.79 2.7E-05 41.7 2.1 38 1427-1486 20-57 (68)
17 1iym_A EL5; ring-H2 finger, ub 78.4 0.36 1.2E-05 42.1 -0.4 16 1429-1444 25-40 (55)
18 1g25_A CDK-activating kinase a 78.0 0.78 2.7E-05 41.5 1.7 18 1428-1445 23-40 (65)
19 2ysl_A Tripartite motif-contai 77.8 0.49 1.7E-05 43.8 0.2 32 1428-1478 35-66 (73)
20 2ep4_A Ring finger protein 24; 77.4 0.84 2.9E-05 42.3 1.8 18 1428-1445 33-50 (74)
21 2ecy_A TNF receptor-associated 76.6 0.9 3.1E-05 41.2 1.7 18 1428-1445 30-47 (66)
22 2ecw_A Tripartite motif-contai 76.4 0.77 2.6E-05 43.4 1.2 35 1428-1478 34-68 (85)
23 2csy_A Zinc finger protein 183 74.7 1.1 3.9E-05 42.3 1.9 31 1428-1480 30-60 (81)
24 2l0b_A E3 ubiquitin-protein li 74.3 0.93 3.2E-05 44.1 1.2 17 1428-1444 58-74 (91)
25 2ect_A Ring finger protein 126 72.9 0.33 1.1E-05 45.7 -2.4 17 1428-1444 33-49 (78)
26 2yur_A Retinoblastoma-binding 71.8 1.1 3.7E-05 41.8 1.0 30 1428-1477 31-60 (74)
27 2ecl_A Ring-box protein 2; RNF 71.4 1.1 3.7E-05 42.8 0.8 17 1428-1444 45-61 (81)
28 1e4u_A Transcriptional repress 71.1 1.4 4.8E-05 41.9 1.5 29 1430-1479 32-60 (78)
29 3fl2_A E3 ubiquitin-protein li 67.2 1.8 6E-05 44.5 1.4 30 1428-1478 67-96 (124)
30 3lrq_A E3 ubiquitin-protein li 66.0 1.5 5.1E-05 43.4 0.6 29 1429-1478 39-67 (100)
31 2djb_A Polycomb group ring fin 65.9 2.2 7.5E-05 39.4 1.6 18 1428-1445 31-48 (72)
32 3j20_W 30S ribosomal protein S 65.7 0.97 3.3E-05 40.9 -0.7 37 1916-1958 4-46 (63)
33 3ztg_A E3 ubiquitin-protein li 65.2 2.3 7.9E-05 41.1 1.8 30 1428-1477 28-58 (92)
34 1jm7_A BRCA1, breast cancer ty 64.6 1.9 6.5E-05 43.2 1.0 31 1428-1477 36-66 (112)
35 2ecn_A Ring finger protein 141 63.4 0.83 2.8E-05 41.9 -1.7 19 1427-1445 28-46 (70)
36 3dpl_R Ring-box protein 1; ubi 63.2 2.5 8.5E-05 42.6 1.6 21 1425-1445 67-87 (106)
37 2d8t_A Dactylidin, ring finger 61.8 0.89 3E-05 42.0 -1.9 17 1428-1444 30-46 (71)
38 2ckl_B Ubiquitin ligase protei 61.3 2.6 8.9E-05 45.5 1.4 17 1429-1445 71-87 (165)
39 2fc7_A ZZZ3 protein; structure 60.7 6.8 0.00023 37.7 4.0 44 117-161 26-74 (82)
40 2y43_A E3 ubiquitin-protein li 60.6 2 6.8E-05 42.2 0.3 17 1429-1445 39-55 (99)
41 3nw0_A Non-structural maintena 60.0 2.1 7.1E-05 49.3 0.4 28 1430-1477 198-225 (238)
42 4ayc_A E3 ubiquitin-protein li 59.3 2 7E-05 45.0 0.2 18 1427-1444 67-84 (138)
43 2egp_A Tripartite motif-contai 58.7 0.74 2.5E-05 43.1 -3.0 36 1428-1478 27-62 (79)
44 1t1h_A Gspef-atpub14, armadill 56.4 2.6 9E-05 39.3 0.4 18 1428-1445 23-40 (78)
45 1fre_A Nuclear factor XNF7; zi 55.6 5.2 0.00018 32.9 2.0 36 116-157 4-39 (42)
46 4ap4_A E3 ubiquitin ligase RNF 55.5 4.6 0.00016 41.3 2.1 36 1428-1485 94-131 (133)
47 2dip_A Zinc finger SWIM domain 55.0 3.5 0.00012 40.9 1.0 42 117-162 36-77 (98)
48 2d8s_A Cellular modulator of i 54.9 5.3 0.00018 38.1 2.2 29 1432-1480 41-69 (80)
49 2ecj_A Tripartite motif-contai 54.8 2.6 8.9E-05 36.8 0.0 18 1428-1445 30-47 (58)
50 2did_A Tripartite motif protei 54.5 7.9 0.00027 33.6 3.1 41 115-161 8-48 (53)
51 3l11_A E3 ubiquitin-protein li 54.1 1.4 4.8E-05 44.6 -2.1 31 1428-1479 30-60 (115)
52 1tot_A CREB-binding protein; z 53.5 4 0.00014 35.8 1.0 37 117-160 11-47 (52)
53 4ap4_A E3 ubiquitin ligase RNF 52.8 3.7 0.00013 42.1 0.8 19 1427-1445 28-46 (133)
54 1z6u_A NP95-like ring finger p 52.1 4 0.00014 43.6 1.0 30 1428-1478 93-122 (150)
55 1qxf_A GR2, 30S ribosomal prot 51.8 4.3 0.00015 37.1 0.9 27 1932-1958 6-38 (66)
56 4a0k_B E3 ubiquitin-protein li 51.3 3.2 0.00011 42.6 0.0 19 1428-1446 81-99 (117)
57 2ysj_A Tripartite motif-contai 50.2 4.8 0.00016 35.9 1.0 18 1428-1445 35-52 (63)
58 2ckl_A Polycomb group ring fin 49.5 3.7 0.00013 41.0 0.2 28 1429-1478 32-59 (108)
59 2e5r_A Dystrobrevin alpha; ZZ 49.1 7.7 0.00026 35.4 2.2 41 117-161 16-61 (63)
60 2csv_A Tripartite motif protei 48.1 7.7 0.00026 36.0 2.1 38 115-159 18-55 (72)
61 2yrg_A Tripartite motif-contai 47.4 11 0.00038 33.6 2.9 40 116-161 15-54 (59)
62 2yvr_A Transcription intermedi 47.2 6.6 0.00022 33.7 1.4 40 114-159 5-44 (50)
63 2dja_A Midline-2; tripartite m 43.9 6.1 0.00021 37.7 0.7 39 116-159 19-57 (84)
64 3hct_A TNF receptor-associated 39.8 7.6 0.00026 39.4 0.7 18 1428-1445 33-50 (118)
65 4ic3_A E3 ubiquitin-protein li 39.0 6.4 0.00022 36.7 0.0 33 1428-1486 39-72 (74)
66 3u5c_b RP61, YS20, 40S ribosom 39.0 10 0.00035 36.1 1.4 37 1916-1958 23-65 (82)
67 1rmd_A RAG1; V(D)J recombinati 37.5 12 0.00039 37.8 1.6 19 1428-1446 38-56 (116)
68 4b6d_A RAC GTPase-activating p 36.0 17 0.00057 33.0 2.2 21 116-136 23-43 (61)
69 3ddt_A E3 ubiquitin-protein li 34.3 10 0.00036 32.2 0.6 40 115-159 6-45 (48)
70 1wim_A KIAA0161 protein; ring 33.9 19 0.00064 34.9 2.4 38 1428-1479 23-62 (94)
71 2d8u_A Ubiquitin ligase TRIM63 33.8 12 0.00041 33.7 0.9 40 115-159 8-47 (64)
72 2xzm_6 RPS27E; ribosome, trans 33.1 13 0.00044 35.4 1.0 37 1916-1958 21-63 (81)
73 3mjh_B Early endosome antigen 32.9 10 0.00035 30.4 0.2 8 1470-1477 6-13 (34)
74 1jm7_B BARD1, BRCA1-associated 32.5 5.1 0.00017 40.7 -2.0 27 1428-1478 37-64 (117)
75 3iz6_X 40S ribosomal protein S 32.2 16 0.00055 35.1 1.5 38 1916-1959 25-68 (86)
76 2egm_A Tripartite motif-contai 31.6 8.5 0.00029 34.2 -0.4 39 114-158 17-55 (57)
77 3knv_A TNF receptor-associated 30.5 9 0.00031 40.4 -0.5 29 1428-1477 46-74 (141)
78 2ecg_A Baculoviral IAP repeat- 29.1 16 0.00054 34.0 0.9 33 1428-1486 40-73 (75)
79 3k1l_B Fancl; UBC, ring, RWD, 28.7 16 0.00054 44.0 1.0 39 1428-1477 331-369 (381)
80 3mhs_A Ubiquitin carboxyl-term 28.0 51 0.0017 41.3 5.6 44 1933-1982 48-92 (476)
81 2y1n_A E3 ubiquitin-protein li 27.4 24 0.00081 43.4 2.3 38 1427-1485 346-383 (389)
82 1wiv_A UBP14, ubiquitin-specif 26.2 67 0.0023 30.1 4.6 45 2-46 16-69 (73)
83 2ea5_A Cell growth regulator w 26.2 19 0.00064 33.1 0.8 34 1428-1487 30-64 (68)
84 1bor_A Transcription factor PM 26.0 7 0.00024 34.3 -2.0 15 1428-1442 21-35 (56)
85 2d8v_A Zinc finger FYVE domain 23.1 44 0.0015 30.7 2.5 35 123-160 14-52 (67)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.92 E-value=5.7e-26 Score=213.15 Aligned_cols=72 Identities=42% Similarity=1.112 Sum_probs=67.0
Q ss_pred CCCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000158 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK 185 (2014)
Q Consensus 114 ~~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~ 185 (2014)
..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus 3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 4689999999999999999999999999999999999999999999885 78999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.90 E-value=5.5e-25 Score=209.45 Aligned_cols=73 Identities=32% Similarity=0.769 Sum_probs=68.9
Q ss_pred CCCCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec---CCccccCCCcccccccCCCCcCC
Q 000158 113 GQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT---GGGCCDCGDVTAWKREGFCSRHK 185 (2014)
Q Consensus 113 ~~~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~---~gG~CDCGd~~awk~~~fC~~H~ 185 (2014)
-..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|..+ +||+|||||++|||+++||+.|.
T Consensus 6 h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 6 HTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred cCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 45689999999999999999999999999999999999999999999874 68999999999999999999874
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.2e-09 Score=106.75 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000158 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2014)
Q Consensus 869 ~lr~eIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2014)
-+|..|||.||++|.+.+||..+|..+... ...|+.||+|||+++++ +|.|+||+++|+|+++.+++||..|+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~----~~~y~Lk~~~~~eVq~dWp~Yte~er 88 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSK----DLSYTLKDYVFKELQRDWPGYSEIDR 88 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT----TTEEEECSTHHHHSCTTCTTCCTTHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc----CCeeehhHHHHHHhccCCCCCCHHHH
Confidence 399999999999999999999999887644 45799999999999875 48999999999999999999999999
Q ss_pred HHHHHHHH
Q 000158 946 QVAEERYL 953 (2014)
Q Consensus 946 q~aeer~~ 953 (2014)
|..+.+..
T Consensus 89 q~v~r~L~ 96 (100)
T 2e5n_A 89 RSLESVLS 96 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88866554
No 4
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.81 E-value=2.9e-09 Score=105.00 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhhccccccccccCchhH
Q 000158 869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL 945 (2014)
Q Consensus 869 ~lr~eIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~dpy~~~y~~~~~ 945 (2014)
-+|+.|||.||++|.+.+||..+|..+... ...|+.||++||+++++ +|.|+||+++|.|+|+.+++|+..|+
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~----~~~y~Lk~~~y~eVq~dWp~Yte~er 87 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ 87 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc----CCeeeehHHHHHHhcCCCCCCCHHHH
Confidence 389999999999999999999999887644 45799999999999874 48999999999999999999999999
Q ss_pred HHHHHHHH
Q 000158 946 QVAEERYL 953 (2014)
Q Consensus 946 q~aeer~~ 953 (2014)
|..+.+..
T Consensus 88 q~v~r~l~ 95 (104)
T 2doa_A 88 QLLKRVLV 95 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766554
No 5
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.65 E-value=0.095 Score=49.50 Aligned_cols=16 Identities=31% Similarity=0.937 Sum_probs=15.1
Q ss_pred ccchHhhHHHHHHHHH
Q 000158 1430 SCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1430 sCGH~MH~~C~~~Y~~ 1445 (2014)
.|||.+|..|..+||.
T Consensus 33 ~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SSCCEECHHHHHHHST
T ss_pred CCCchhhHHHHHHHHH
Confidence 9999999999999974
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=84.31 E-value=0.43 Score=43.73 Aligned_cols=37 Identities=32% Similarity=0.742 Sum_probs=27.3
Q ss_pred ccccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceec
Q 000158 1426 IHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484 (2014)
Q Consensus 1426 ~H~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLP 1484 (2014)
+....|||..|..|.++|+.. + ..||+||+--+..+|
T Consensus 30 ~~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 30 VRRLPCMHLFHQVCVDQWLIT------------N----------KKCPICRVDIEAQLP 66 (69)
T ss_dssp EEECTTSCEEEHHHHHHHHHH------------C----------SBCTTTCSBSCSCCC
T ss_pred EEEeCCCCHHHHHHHHHHHHc------------C----------CCCcCcCccccCcCC
Confidence 345679999999999999743 0 029999986665554
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=84.12 E-value=0.21 Score=50.56 Aligned_cols=37 Identities=30% Similarity=0.677 Sum_probs=26.8
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANS 1481 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~ 1481 (2014)
...|||+.|.+|.+.++..-. ..+...||+||+.-..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----------------~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----------------KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----------------CSSCCBCTTTCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHccc-----------------CCCCCcCCCCCCccCC
Confidence 678999999999999972210 1244689999986443
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=82.98 E-value=0.29 Score=42.59 Aligned_cols=19 Identities=32% Similarity=0.938 Sum_probs=16.3
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
....|||..|..|.++++.
T Consensus 23 ~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 23 HVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp EECTTSCEEETTHHHHHHH
T ss_pred EecCCCCcccHHHHHHHHH
Confidence 3667999999999999864
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.70 E-value=0.39 Score=43.71 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+..|||..|..|+++++.
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp EECSSSCEEEHHHHHHHHH
T ss_pred EeCCCCChhcHHHHHHHHH
Confidence 4678999999999999975
No 10
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.55 E-value=0.44 Score=45.66 Aligned_cols=32 Identities=31% Similarity=0.864 Sum_probs=25.5
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..|..|+++++..- .+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASS-------------------INGVRCPFCSKI 65 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHC-------------------SSCBCCTTTCCC
T ss_pred ECCCCChhhHHHHHHHHHcC-------------------CCCcCCCCCCCc
Confidence 56899999999999997521 146789999974
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=81.54 E-value=0.3 Score=43.73 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.8
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+..|||..|.+|+++++.
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp EEETTSCEEEHHHHHHHHH
T ss_pred EeCCCCCchhHHHHHHHHH
Confidence 3678999999999999975
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=81.20 E-value=0.41 Score=43.92 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.6
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+..|||..|..|+++++.
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp EECTTSCEEEHHHHHHHHH
T ss_pred EeCCCCChHhHHHHHHHHH
Confidence 3678999999999999974
No 13
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=81.10 E-value=0.35 Score=44.88 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=31.5
Q ss_pred ChHHHHHhCCCCCCCcchHHHHHHHHccccCCCCCCcceEEeehhhh
Q 000158 884 THSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYW 930 (2014)
Q Consensus 884 t~S~L~~~lpe~~~~~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~ 930 (2014)
+..+|..... +.+.-+.+||++||+|.. +|...|+|+|||||-
T Consensus 24 ~lK~L~~~t~---QP~~yLKeiL~~Ia~~~k-~g~~~~~weLKpEyr 66 (69)
T 1bby_A 24 NLKDLVDITK---QPVVYLKEILKEIGVQNV-KGIHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHCC---SCHHHHHHHHHHHCCCBC-CTTCCCBBCCCCSSC
T ss_pred cHHHHHHHHc---CcHHHHHHHHHHHHHHHc-CCCCCCeeeCcHHHh
Confidence 4455554432 234568999999999986 366789999999974
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.15 E-value=0.65 Score=43.93 Aligned_cols=36 Identities=39% Similarity=0.675 Sum_probs=27.2
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~ 1479 (2014)
+..|||..|..|+++|+..-.. ..+.+.||+||.--
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~----------------~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSML----------------DKGESSCPVCRISY 69 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHH----------------TTSCCCCTTTCCSS
T ss_pred eCCCCCHHHHHHHHHHHHHhhc----------------CCCCCcCCCCCCcc
Confidence 4579999999999999865321 12467899999753
No 15
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.42 E-value=0.29 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.968 Sum_probs=15.1
Q ss_pred ccccchHhhHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2014)
...|||+.|..|.++++
T Consensus 41 ~l~C~H~fh~~Ci~~w~ 57 (75)
T 1x4j_A 41 VLPCNHEFHAKCVDKWL 57 (75)
T ss_dssp EETTTEEEETTHHHHHH
T ss_pred EECCCCHhHHHHHHHHH
Confidence 45699999999999986
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.15 E-value=0.79 Score=41.72 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=29.0
Q ss_pred cccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceeccC
Q 000158 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLPi~ 1486 (2014)
....|||..|..|.++++.. + ..||+||+--+.+++.+
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~------------~----------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQ------------N----------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp EETTTTEEESTTHHHHHHHH------------S----------CSTTTTCCCCCCEECCC
T ss_pred EecCCCCeeHHHHHHHHHhC------------c----------CcCcCCChhhHhhhhcc
Confidence 46679999999999998731 0 26999998777666654
No 17
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=78.45 E-value=0.36 Score=42.06 Aligned_cols=16 Identities=38% Similarity=1.084 Sum_probs=14.0
Q ss_pred cccchHhhHHHHHHHH
Q 000158 1429 SSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1429 SsCGH~MH~~C~~~Y~ 1444 (2014)
..|||..|.+|.++++
T Consensus 25 ~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 25 PRCGHGFHAECVDMWL 40 (55)
T ss_dssp SSSCCEECTTHHHHTT
T ss_pred CCCCCcccHHHHHHHH
Confidence 3599999999998885
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.00 E-value=0.78 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.7
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..|..|.++++.
T Consensus 23 ~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp ECTTCCCEEHHHHHHHHH
T ss_pred cCCCCCHhHHHHHHHHHH
Confidence 568999999999998864
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.79 E-value=0.49 Score=43.76 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.9
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..|..|+++++.. ..+.+.||+||.-
T Consensus 35 ~~~CgH~fC~~Ci~~~~~~-------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 35 TIDCGHNFCLKCITQIGET-------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp ECTTCCEEEHHHHHHHCSS-------------------SCSCCCCSSSCCC
T ss_pred EcCCCChhhHHHHHHHHHc-------------------CCCCCCCCCCCCc
Confidence 4489999999999998650 1356789999973
No 20
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.42 E-value=0.84 Score=42.33 Aligned_cols=18 Identities=33% Similarity=0.909 Sum_probs=15.4
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
...|||..|..|.++++.
T Consensus 33 ~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp EETTTEEEEHHHHHHHHH
T ss_pred EcCCCCEecHHHHHHHHH
Confidence 446999999999999873
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.58 E-value=0.9 Score=41.23 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.9
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..|..|.++++.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 30 QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCSSSCCCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999975
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.44 E-value=0.77 Score=43.44 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=26.7
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..|..|+++|+.... .+.+.+.||+||.-
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~----------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 34 SADCNHSFCRACITLNYESNR----------------NTDGKGNCPVCRVP 68 (85)
T ss_dssp ECTTSCCBCHHHHHHHHHHSB----------------CTTSCBCCTTTCCC
T ss_pred eCCCCCHHHHHHHHHHHHhcc----------------CCCCCCCCCCCCCc
Confidence 567999999999999975421 12457889999974
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.74 E-value=1.1 Score=42.29 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=25.2
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N 1480 (2014)
+..|||..|..|+.+++.. ...||+||.--+
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 30 VTKCRHYFCESCALEHFRA----------------------TPRCYICDQPTG 60 (81)
T ss_dssp ECTTSCEEEHHHHHHHHHH----------------------CSBCSSSCCBCC
T ss_pred EccCCCHhHHHHHHHHHHC----------------------CCcCCCcCcccc
Confidence 6789999999999999752 135999998655
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=74.33 E-value=0.93 Score=44.13 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=14.8
Q ss_pred ccccchHhhHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2014)
...|||..|..|.++++
T Consensus 58 ~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 58 ELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EETTTEEEEHHHHHHHH
T ss_pred ecCCCChHHHHHHHHHH
Confidence 45699999999999986
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.87 E-value=0.33 Score=45.68 Aligned_cols=17 Identities=24% Similarity=0.729 Sum_probs=15.0
Q ss_pred ccccchHhhHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2014)
...|||..|..|.++++
T Consensus 33 ~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp ECTTSCEEETTTTHHHH
T ss_pred EeCCCCeecHHHHHHHH
Confidence 45699999999999986
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=71.80 E-value=1.1 Score=41.79 Aligned_cols=30 Identities=27% Similarity=0.770 Sum_probs=23.7
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
+..|||..|..|.++++.. .+.+.||+||+
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~ 60 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCEECTTHHHHHHHH--------------------SSSSCCSSSCC
T ss_pred cCCCCCHHHHHHHHHHHHh--------------------cCCCcCCCCCC
Confidence 3349999999999999752 12467999999
No 27
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.41 E-value=1.1 Score=42.75 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.1
Q ss_pred ccccchHhhHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2014)
+..|||+.|.+|.++++
T Consensus 45 ~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp EETTSCEEEHHHHHHHT
T ss_pred eCCCCCccChHHHHHHH
Confidence 55799999999999985
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=71.11 E-value=1.4 Score=41.89 Aligned_cols=29 Identities=31% Similarity=0.715 Sum_probs=22.7
Q ss_pred ccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccc
Q 000158 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2014)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~ 1479 (2014)
.|||..+..|+.++.+ .+.+.||+||+--
T Consensus 32 ~CGH~fC~~Cl~~~~~---------------------~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT---------------------DENGLCPACRKPY 60 (78)
T ss_dssp TTSCCCCHHHHHHHTT---------------------SSCSBCTTTCCBC
T ss_pred CCCCCcCHHHHHHHHh---------------------cCCCCCCCCCCcc
Confidence 4999999999987631 1357899999853
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=67.20 E-value=1.8 Score=44.53 Aligned_cols=30 Identities=40% Similarity=0.816 Sum_probs=24.1
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..|..|..+++. .+.+.||+||.-
T Consensus 67 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~ 96 (124)
T 3fl2_A 67 TTVCQHNVCKDCLDRSFR---------------------AQVFSCPACRYD 96 (124)
T ss_dssp ECTTSCEEEHHHHHHHHH---------------------TTCCBCTTTCCB
T ss_pred EeeCCCcccHHHHHHHHh---------------------HCcCCCCCCCcc
Confidence 558999999999999875 023579999973
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=66.00 E-value=1.5 Score=43.43 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=23.8
Q ss_pred cccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
..|||.-|..|..+++..- .+.||+||.-
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~---------------------~~~CP~Cr~~ 67 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQ---------------------RAQCPHCRAP 67 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHT---------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHHC---------------------cCCCCCCCCc
Confidence 7999999999999987521 1679999973
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.85 E-value=2.2 Score=39.41 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=15.9
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..|..|.++++.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp CSSSCCEECHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 458999999999999984
No 32
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.70 E-value=0.97 Score=40.94 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=27.8
Q ss_pred cccCCchHHHHHHHHHHhcccCCCCCC------CCCCcchhccccccCC
Q 000158 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2014)
Q Consensus 1916 ~Li~LP~~yd~L~~~~~~~~Cp~c~~~------p~dPalCL~CG~lc~q 1958 (2014)
+||+=|+.| +.+.+||.|+.+ ...+..|..||++.++
T Consensus 4 rLv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 4 PIIPMPRSR------FLRVKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp GGCCCCSCC------EEEEECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ccccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 456666543 456899999986 5899999999995444
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=65.23 E-value=2.3 Score=41.10 Aligned_cols=30 Identities=27% Similarity=0.738 Sum_probs=23.6
Q ss_pred ccc-cchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1428 LSS-CGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1428 ~Ss-CGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
+.. |||..+..|.++++.. .+.+.||+||.
T Consensus 28 ~~~~CgH~fC~~Ci~~~~~~--------------------~~~~~CP~Cr~ 58 (92)
T 3ztg_A 28 VIPCCGNSYCDECIRTALLE--------------------SDEHTCPTCHQ 58 (92)
T ss_dssp ECTTTCCEECHHHHHHHHHH--------------------CTTCCCTTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHh--------------------cCCCcCcCCCC
Confidence 444 9999999999998751 13478999996
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.56 E-value=1.9 Score=43.19 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=24.5
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
+..|||..|..|..+++..- .+.+.||+||.
T Consensus 36 ~~~CgH~fC~~Ci~~~~~~~-------------------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 36 STKCDHIFCKFCMLKLLNQK-------------------KGPSQCPLCKN 66 (112)
T ss_dssp BCTTSCCCCSHHHHHHHHSS-------------------SSSCCCTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHhC-------------------CCCCCCcCCCC
Confidence 56899999999999986420 24578999997
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.39 E-value=0.83 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=15.7
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+..|||..|..|.++++.
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp EEETTTEEECHHHHHHSSC
T ss_pred cccCCCCcccHHHHHHHHH
Confidence 4667999999999988753
No 36
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=63.18 E-value=2.5 Score=42.62 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=17.0
Q ss_pred CccccccchHhhHHHHHHHHH
Q 000158 1425 GIHLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1425 G~H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+....|||..|..|...++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHT
T ss_pred eEeecccCcEECHHHHHHHHH
Confidence 345678999999999999853
No 37
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.78 E-value=0.89 Score=41.96 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.4
Q ss_pred ccccchHhhHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~ 1444 (2014)
...|||..|..|.++++
T Consensus 30 ~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp EETTTEEEEHHHHHHCT
T ss_pred EccCCCHHHHHHHHHHH
Confidence 44699999999998874
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=61.32 E-value=2.6 Score=45.51 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=15.3
Q ss_pred cccchHhhHHHHHHHHH
Q 000158 1429 SSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~ 1445 (2014)
..|||..|..|.++++.
T Consensus 71 ~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 71 KECLHRFCADCIITALR 87 (165)
T ss_dssp TTTCCEEEHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHH
Confidence 48999999999999974
No 39
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=60.70 E-value=6.8 Score=37.65 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.3
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCC----CCC-CCceeEEEe
Q 000158 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQN----GNH-KEHDYSIIY 161 (2014)
Q Consensus 117 ~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~----~~H-~~H~~~~~~ 161 (2014)
.|+..--.| +-|+|.+|.-+...-+|..||.. ..| ..|.+..+.
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 365432223 67999999866668899999975 578 589998775
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=60.58 E-value=2 Score=42.24 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=15.1
Q ss_pred cccchHhhHHHHHHHHH
Q 000158 1429 SSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~ 1445 (2014)
..|||..|..|+++|+.
T Consensus 39 ~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TTTCCEEEHHHHHHHHT
T ss_pred CCCCCHhhHHHHHHHHH
Confidence 37999999999999974
No 41
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.98 E-value=2.1 Score=49.34 Aligned_cols=28 Identities=36% Similarity=0.902 Sum_probs=22.5
Q ss_pred ccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1430 sCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
.|||.+|..|+.+|+.+ +++-.||.|+.
T Consensus 198 ~C~~~~H~~C~~~~~~~--------------------~~~~~CP~C~~ 225 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQS--------------------NAEPRCPHCND 225 (238)
T ss_dssp SSCCEECHHHHHHHTTT--------------------CSSCBCTTTCC
T ss_pred ccChHHHHHHHHHHHHh--------------------CCCCCCCCCCC
Confidence 49999999999999732 24557999987
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=59.29 E-value=2 Score=45.02 Aligned_cols=18 Identities=17% Similarity=0.597 Sum_probs=15.5
Q ss_pred cccccchHhhHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYV 1444 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~ 1444 (2014)
.+..|||..|..|..+|+
T Consensus 67 ~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 67 VTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EEETTSCEEEHHHHHHHT
T ss_pred eECCCCCCccHHHHHHHH
Confidence 366899999999998875
No 43
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.68 E-value=0.74 Score=43.12 Aligned_cols=36 Identities=25% Similarity=0.537 Sum_probs=25.7
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..|..|+++|+..-. ....+...||+||.-
T Consensus 27 ~l~CgH~fC~~Ci~~~~~~~~---------------~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 27 SLDCGHSLCRACITVSNKEAV---------------TSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCSSSCCCCHHHHSCCCCCCS---------------SSCCCCCCCSSSCCC
T ss_pred ECCCCCHHHHHHHHHHHHhcc---------------cCCCCCCcCCCCCCc
Confidence 457999999999998753210 012467899999974
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=56.39 E-value=2.6 Score=39.34 Aligned_cols=18 Identities=11% Similarity=0.482 Sum_probs=16.1
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..+..|.++|+.
T Consensus 23 ~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp EETTTEEEEHHHHHHHHT
T ss_pred EcCCCCeecHHHHHHHHH
Confidence 568999999999999974
No 45
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=55.55 E-value=5.2 Score=32.95 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=26.7
Q ss_pred CcccccccCCceeEEeccCCCCCCccccccccCCCCCCCcee
Q 000158 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDY 157 (2014)
Q Consensus 116 ~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~ 157 (2014)
..|+.-- ....|-|.+|+ ..+|..|+..+.|+||++
T Consensus 4 ~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~ 39 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDG----TLSCVICRDSLKHASHNF 39 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSS----SSSCCTTSSCSSCTTCCC
T ss_pred ccchhhC--CeeeEEeCCCC----eEEeccCCCCCCCCCCcE
Confidence 4676663 34556677655 459999999999999986
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=55.49 E-value=4.6 Score=41.31 Aligned_cols=36 Identities=28% Similarity=0.662 Sum_probs=26.5
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc--ccceecc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL--ANSVLPA 1485 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L--~N~vLPi 1485 (2014)
...|||..|..|.+++++. ...||+||+- .|-+.|+
T Consensus 94 ~~~CgH~fc~~Ci~~~~~~----------------------~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 94 STECGHVFCSQCLRDSLKN----------------------ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp EETTSBEEEHHHHHHHHHH----------------------CSBCTTTCCBCCGGGEEEE
T ss_pred eCCCCChhhHHHHHHHHHc----------------------CCCCCCCCCcCChhcceee
Confidence 5689999999999998742 1379999974 3344444
No 47
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=55.01 E-value=3.5 Score=40.94 Aligned_cols=42 Identities=21% Similarity=0.532 Sum_probs=31.8
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec
Q 000158 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT 162 (2014)
Q Consensus 117 ~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~~ 162 (2014)
.|+..--.| .-|+|..|. ..-+|.+||..+.|.+|.|..+..
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 466542233 679999996 366999999999999999976544
No 48
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.88 E-value=5.3 Score=38.09 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=22.5
Q ss_pred chHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccccc
Q 000158 1432 GHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLAN 1480 (2014)
Q Consensus 1432 GH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N 1480 (2014)
+|..|.+|.++.+..- +...||+||.-=+
T Consensus 41 ~h~fH~~Cl~~Wl~~~--------------------~~~~CplCr~~~~ 69 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS--------------------DTRCCELCKYEFI 69 (80)
T ss_dssp SCCEETTHHHHHHHHH--------------------CCSBCSSSCCBCC
T ss_pred CCeeCHHHHHHHHhhC--------------------CCCCCCCCCCeee
Confidence 5999999999998641 2357999998543
No 49
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.81 E-value=2.6 Score=36.81 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=15.6
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..|..|+++++.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 30 IIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCSSCCCCCHHHHHHHTT
T ss_pred eCCCCCccCHHHHHHHHH
Confidence 457999999999999864
No 50
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=54.45 E-value=7.9 Score=33.63 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000158 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2014)
Q Consensus 115 ~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~ 161 (2014)
...|...- ...-|-|.+|+ ..+|..|+..+.|++|++.-..
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQ----EAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSC----SEECHHHHTSSTTTTSCEEECC
T ss_pred CCcChhhC--CeeeEEeCCCC----eEEeccccCCCCCCCCcEeeHH
Confidence 45787764 45778888876 4699999999999999986543
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=54.11 E-value=1.4 Score=44.64 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=23.8
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLA 1479 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~ 1479 (2014)
+..|||..+..|+++++. .+.+.||+||.--
T Consensus 30 ~~~CgH~fC~~Ci~~~~~---------------------~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 30 TLPCNHTLCKPCFQSTVE---------------------KASLCCPFCRRRV 60 (115)
T ss_dssp ECTTSCEECHHHHCCCCC---------------------TTTSBCTTTCCBC
T ss_pred EcCCCCHHhHHHHHHHHh---------------------HCcCCCCCCCccc
Confidence 458999999999987642 2347899999843
No 52
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=53.55 E-value=4 Score=35.80 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=28.4
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEE
Q 000158 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSII 160 (2014)
Q Consensus 117 ~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~ 160 (2014)
.|++.. | .-|+|..|. ..-+|..||..+.| +|....+
T Consensus 11 ~C~~~i--g-~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV--E-TRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE--S-SEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC--c-ceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 466653 3 679999996 46699999999999 7876554
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=52.75 E-value=3.7 Score=42.06 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.7
Q ss_pred cccccchHhhHHHHHHHHH
Q 000158 1427 HLSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~ 1445 (2014)
.+..|||..|.+|+++|+.
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 28 VSTECGHVFCSQCLRDSLK 46 (133)
T ss_dssp EEETTCCEEEHHHHHHHHT
T ss_pred EecCCCChhhHHHHHHHHH
Confidence 3678999999999999974
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=52.10 E-value=4 Score=43.57 Aligned_cols=30 Identities=37% Similarity=0.791 Sum_probs=24.4
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+..|||..+..|.++++.. +.+.||+||.-
T Consensus 93 ~~~CgH~fC~~Ci~~~~~~---------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 93 TTECFHNVCKDCLQRSFKA---------------------QVFSCPACRHD 122 (150)
T ss_dssp ECTTSCEEEHHHHHHHHHT---------------------TCCBCTTTCCB
T ss_pred EcCCCCchhHHHHHHHHHh---------------------CCCcCCCCCcc
Confidence 5689999999999999752 23679999974
No 55
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=51.77 E-value=4.3 Score=37.11 Aligned_cols=27 Identities=30% Similarity=0.764 Sum_probs=22.2
Q ss_pred HhcccCCCCCC------CCCCcchhccccccCC
Q 000158 1932 IKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2014)
Q Consensus 1932 ~~~~Cp~c~~~------p~dPalCL~CG~lc~q 1958 (2014)
.+.+||.|+++ ...+..|..||++.++
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 45799999986 5899999999996444
No 56
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=51.31 E-value=3.2 Score=42.63 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=0.0
Q ss_pred ccccchHhhHHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVSS 1446 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2014)
...|||..|..|...++..
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------
T ss_pred cCCcCceEcHHHHHHHHHc
Confidence 4579999999999998653
No 57
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.17 E-value=4.8 Score=35.92 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=16.2
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||.-|..|.+++++
T Consensus 35 ~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 35 TIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp ECTTSSEECHHHHHHHHH
T ss_pred EeCCCCcchHHHHHHHHH
Confidence 458999999999999986
No 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=49.53 E-value=3.7 Score=41.04 Aligned_cols=28 Identities=29% Similarity=0.790 Sum_probs=22.7
Q ss_pred cccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1429 SSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1429 SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
..|||..|..|.++++.. ...||+||.-
T Consensus 32 ~~CgH~fC~~Ci~~~~~~----------------------~~~CP~Cr~~ 59 (108)
T 2ckl_A 32 IECLHSFCKTCIVRYLET----------------------SKYCPICDVQ 59 (108)
T ss_dssp TTTCCEEEHHHHHHHHTS----------------------CSBCTTTCCB
T ss_pred CCCCChhhHHHHHHHHHh----------------------CCcCcCCCcc
Confidence 489999999999988642 0579999974
No 59
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.13 E-value=7.7 Score=35.37 Aligned_cols=41 Identities=27% Similarity=0.668 Sum_probs=28.7
Q ss_pred cccccccCCceeEEeccCCCCCCccccccccCCCC----CC-CceeEEEe
Q 000158 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN----HK-EHDYSIIY 161 (2014)
Q Consensus 117 ~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~----H~-~H~~~~~~ 161 (2014)
.|++.--. ..-|+|.+|. ..-+|..||..+. |+ .|.+..+.
T Consensus 16 ~C~~~pi~-G~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMM-GFRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSC-SCEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCccee-cceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 46655222 3789999995 3679999998775 74 67776653
No 60
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=48.11 E-value=7.7 Score=35.95 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=30.1
Q ss_pred CCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000158 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2014)
Q Consensus 115 ~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2014)
...|...- ...-|-|.+|+. .+|..|+. +.|+||++.-
T Consensus 18 ~~~C~~H~--e~l~lfC~~d~~----~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVHG--KTMELFCQTDQT----CICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTTC--CBCCEEESSSCC----EECHHHHH-TTTSSSCEEE
T ss_pred cCcCcccC--CceEEEeCCCCe----EEccccCC-CCCCCCCEec
Confidence 46788772 567788998873 68999998 9999999864
No 61
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.38 E-value=11 Score=33.64 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=30.8
Q ss_pred CcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEe
Q 000158 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIY 161 (2014)
Q Consensus 116 ~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~~~ 161 (2014)
..|...- ...-|-|.+|+. .||..|+..+.|++|++.-..
T Consensus 15 ~~C~~H~--e~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp SBCTTTC--CBCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred ccChhhC--ceeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence 5687664 356678887763 689999999999999986543
No 62
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=47.17 E-value=6.6 Score=33.66 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.6
Q ss_pred CCCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000158 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2014)
Q Consensus 114 ~~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2014)
....|+.--. ....|-|.+|+ ..+|..|.. +.|+||++.-
T Consensus 5 ~~~~C~~H~~-e~l~lfC~~~~----~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 5 RTVYCNVHKH-EPLVLFCESCD----TLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp CSCBCSSSTT-CBCCEEETTTT----EEECHHHHH-TTTTTCCEEE
T ss_pred CCCcCcCCCC-CCEEEEeCCCC----EEEecccCC-CcCCCCceec
Confidence 3456755422 34668899986 468999988 6999999754
No 63
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=43.89 E-value=6.1 Score=37.65 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=29.3
Q ss_pred CcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000158 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2014)
Q Consensus 116 ~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2014)
..|...=. ...-|-|.+|+ ..+|..|+..+.|+||++.-
T Consensus 19 ~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHEN-EKVNMYCVSDD----QLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCSS-SCCCEEETTTT----EEECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcCC-ccccEEcCCCC----ceEcccCcCCCCCCCCCccC
Confidence 45755411 23778899988 47999999999999999754
No 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=39.84 E-value=7.6 Score=39.45 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=15.7
Q ss_pred ccccchHhhHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVS 1445 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~ 1445 (2014)
+..|||..+..|+.+++.
T Consensus 33 ~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 33 QTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp ECTTSCEEEHHHHHHHHH
T ss_pred ECCcCChhhHHHHHHHHh
Confidence 457999999999999874
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=39.03 E-value=6.4 Score=36.66 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=25.8
Q ss_pred ccccchH-hhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceeccC
Q 000158 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2014)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLPi~ 1486 (2014)
+..|||. ....|..+. ..||+||+--..++.++
T Consensus 39 ~~pCgH~~~C~~C~~~~--------------------------~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 39 FVPCGHLVTCKQCAEAV--------------------------DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp EETTCCBCCCHHHHTTC--------------------------SBCTTTCCBCSEEEECB
T ss_pred EcCCCChhHHHHhhhcC--------------------------ccCCCcCcCccCcEEEe
Confidence 4579999 999996542 67999998777766664
No 66
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=39.02 E-value=10 Score=36.09 Aligned_cols=37 Identities=19% Similarity=0.548 Sum_probs=29.2
Q ss_pred cccCCchHHHHHHHHHHhcccCCCCCC------CCCCcchhccccccCC
Q 000158 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2014)
Q Consensus 1916 ~Li~LP~~yd~L~~~~~~~~Cp~c~~~------p~dPalCL~CG~lc~q 1958 (2014)
+||+=|..| +...+||.|+.+ ...+..|..||++.|+
T Consensus 23 ~Lv~~PnS~------Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 23 TLVQGPRSY------FLDVKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp SSSCCCCCC------EEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred eeccCCCCc------EEEEECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 577777654 456899999986 5899999999996444
No 67
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=37.54 E-value=12 Score=37.83 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.5
Q ss_pred ccccchHhhHHHHHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDRYVSS 1446 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~S 1446 (2014)
+..|||.-|..|.++++..
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHH
T ss_pred EcCCCCcccHHHHHHHHhH
Confidence 5689999999999999754
No 68
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=35.99 E-value=17 Score=32.97 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.9
Q ss_pred CcccccccCCceeEEeccCCC
Q 000158 116 GVCGAVWGNNDIAYRCRTCEH 136 (2014)
Q Consensus 116 ~~Cg~v~~~g~~~y~C~~C~~ 136 (2014)
.+||+.|+-|-..|+|++|++
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 578999988999999999985
No 69
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=34.28 E-value=10 Score=32.15 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=28.7
Q ss_pred CCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000158 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2014)
Q Consensus 115 ~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2014)
...|..--+ ....+-|++|+ ..+|..|...+.|+||++.-
T Consensus 6 ~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 6 HPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp SCBCSSSTT-SBCCEEETTTT----EEECHHHHHHSTTTTSCEEE
T ss_pred CCcCCCCCC-ccccEEcCCCC----eeEcccccCCCcCCCCcEEe
Confidence 345764321 23668899886 47999999888999999753
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.86 E-value=19 Score=34.93 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=27.9
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccc--ccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPV--CRQLA 1479 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPL--CK~L~ 1479 (2014)
+..|||.--.+||++|+++-.+. + ......||. |+..+
T Consensus 23 l~~CgH~FC~~Cl~~~~~~~i~~--------g------~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 23 IAQCQCIFCTLCLKQYVELLIKE--------G------LETAISCPDAACPKQG 62 (94)
T ss_dssp ETTTTEEEEHHHHHHHHHHHHHH--------C------SCCCEECSCTTCSSCC
T ss_pred cCCCCCcccHHHHHHHHHHHhhc--------C------CcccccCccccCCCCC
Confidence 34799999999999999865321 1 014678999 99764
No 71
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=33.85 E-value=12 Score=33.67 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=28.7
Q ss_pred CCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEE
Q 000158 115 RGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI 159 (2014)
Q Consensus 115 ~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~~ 159 (2014)
...|...=. ...-|-|.+|+ ..+|..|...+.|+||++.-
T Consensus 8 ~~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 8 HPMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCSSCTT-CCCCSEESSSC----CCCCSHHHHSSSTTSSCEEC
T ss_pred CCcCcCcCC-CccceEcCcCC----ceeCccccCCCcCCCCCeeC
Confidence 356755511 24567788887 45899999999999999854
No 72
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=33.09 E-value=13 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=28.5
Q ss_pred cccCCchHHHHHHHHHHhcccCCCCCC------CCCCcchhccccccCC
Q 000158 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSP 1958 (2014)
Q Consensus 1916 ~Li~LP~~yd~L~~~~~~~~Cp~c~~~------p~dPalCL~CG~lc~q 1958 (2014)
+||+=|..| +...+||.|+.+ ...+..|..||++.|+
T Consensus 21 ~Lv~~PnS~------Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 21 RLIQAPNSY------FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp SSSCCCSCC------EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeCCCCc------EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 577777543 355799999986 5889999999996444
No 73
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.86 E-value=10 Score=30.43 Aligned_cols=8 Identities=50% Similarity=1.609 Sum_probs=7.0
Q ss_pred cccccccc
Q 000158 1470 FLCPVCRQ 1477 (2014)
Q Consensus 1470 FLCPLCK~ 1477 (2014)
|+||+|+.
T Consensus 6 FiCP~C~~ 13 (34)
T 3mjh_B 6 FICPQCMK 13 (34)
T ss_dssp EECTTTCC
T ss_pred cCCcHHHH
Confidence 99999963
No 74
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.49 E-value=5.1 Score=40.69 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=22.2
Q ss_pred cc-ccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCcccccccccc
Q 000158 1428 LS-SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQL 1478 (2014)
Q Consensus 1428 ~S-sCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L 1478 (2014)
+. .|||..+..|.++++. ..||+||.-
T Consensus 37 ~~~~CgH~fC~~Ci~~~~~------------------------~~CP~Cr~~ 64 (117)
T 1jm7_B 37 CLGGCEHIFCSNCVSDCIG------------------------TGCPVCYTP 64 (117)
T ss_dssp CCCSSSCCBCTTTGGGGTT------------------------TBCSSSCCB
T ss_pred EeCCCCCHHHHHHHHHHhc------------------------CCCcCCCCc
Confidence 44 8999999999987743 569999975
No 75
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=32.19 E-value=16 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=24.0
Q ss_pred cccCCchHHHHHHHHHHhcccCCCCCC------CCCCcchhccccccCCC
Q 000158 1916 KLMCLPHLYQDLLQRYIKQCCSDCKSV------LDEPALCLLCGRLCSPS 1959 (2014)
Q Consensus 1916 ~Li~LP~~yd~L~~~~~~~~Cp~c~~~------p~dPalCL~CG~lc~qs 1959 (2014)
+||+=|..| +...+||.|+.+ ...+..|..||++.|+-
T Consensus 25 ~Lv~~PnS~------Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 25 RLVQSPNSF------FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp --------C------EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred eeccCCCCc------EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 466666543 455899999976 58899999999975553
No 76
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.61 E-value=8.5 Score=34.18 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=30.1
Q ss_pred CCCcccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeE
Q 000158 114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYS 158 (2014)
Q Consensus 114 ~~~~Cg~v~~~g~~~y~C~~C~~d~t~~~C~~CF~~~~H~~H~~~ 158 (2014)
....|..-- ...-|-|.+|+ ..+|..|+..+.|++|++.
T Consensus 17 ~~~~C~~H~--e~L~lfC~~d~----~~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKHQ--EALKLFCEVDE----EAICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTTC--CBCCEEETTTT----EEECHHHHHSHHHHSSCEE
T ss_pred ccCcChhhC--ceeeEEcCCCC----cEEecccCCCCCCCCCcEe
Confidence 345788773 45777788765 5699999999999999874
No 77
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=30.54 E-value=9 Score=40.41 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=23.6
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
+..|||..+..|+++++. .+.+.||+||.
T Consensus 46 ~~~CgH~FC~~Ci~~~~~---------------------~~~~~CP~Cr~ 74 (141)
T 3knv_A 46 QAQCGHRYCSFCLASILS---------------------SGPQNCAACVH 74 (141)
T ss_dssp ECTTSCEEEHHHHHHHGG---------------------GSCEECHHHHH
T ss_pred ECCCCCccCHHHHHHHHh---------------------cCCCCCCCCCC
Confidence 568999999999999863 12368999997
No 78
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.09 E-value=16 Score=33.95 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=25.0
Q ss_pred ccccchH-hhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceeccC
Q 000158 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPAL 1486 (2014)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLPi~ 1486 (2014)
..-|||. ....|.++ -..||+||.--..++.|+
T Consensus 40 ~~pCgH~~~C~~C~~~--------------------------~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 40 FVPCGHLVTCKQCAEA--------------------------VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp CSSSCCCCBCHHHHHH--------------------------CSBCTTTCCBCCCCCBCC
T ss_pred EecCCCHHHHHHHhhC--------------------------CCCCccCCceecCcEEEe
Confidence 5679999 99999731 046999998777666664
No 79
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=28.73 E-value=16 Score=43.99 Aligned_cols=39 Identities=23% Similarity=0.660 Sum_probs=28.7
Q ss_pred ccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccc
Q 000158 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQ 1477 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~ 1477 (2014)
...|||..|..|..+.|.+.... |.. ++.-.| .||+||.
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~s---RqS------Fnvi~G--~CPyCr~ 369 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMDG---KTF------LEVSFG--QCPFCKA 369 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHSS---SCT------TTCCEE--ECTTTCC
T ss_pred CCccCCccchHHHHHHHHhCCCc---ccc------ccccCC--CCCCCCC
Confidence 46899999999999999998632 332 232223 5999998
No 80
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=27.98 E-value=51 Score=41.31 Aligned_cols=44 Identities=27% Similarity=0.553 Sum_probs=33.0
Q ss_pred hcccCCCCCCC-CCCcchhccccccCCCCCcCCCcchHHHHHhhcCCCeEE
Q 000158 1933 KQCCSDCKSVL-DEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGV 1982 (2014)
Q Consensus 1933 ~~~Cp~c~~~p-~dPalCL~CG~lc~qs~~~CC~~GeC~~Ha~~CGagvGI 1982 (2014)
..+|..|+... .+.-+||.||.+ .||..+--..|+..-|.-+.|
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~------~c~~~~h~~~H~~~~~h~~~~ 92 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFC------GCWNHSHFLSHSKQIGHIFGI 92 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCE------EETTTTHHHHHHHHHCCCEEE
T ss_pred CCCcccccCCCCCCceEeCCCCCC------ccCCchHHHHHhcccCCcEEE
Confidence 36799998774 677899999954 344456778899888886655
No 81
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=27.44 E-value=24 Score=43.36 Aligned_cols=38 Identities=29% Similarity=0.659 Sum_probs=28.3
Q ss_pred cccccchHhhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceecc
Q 000158 1427 HLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPA 1485 (2014)
Q Consensus 1427 H~SsCGH~MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLPi 1485 (2014)
-...|||..|..|...++.+ + .-.||+||+--....++
T Consensus 346 v~lpCGH~FC~~Ci~~wl~~---~------------------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 346 KIEPCGHLMCTSCLTSWQES---E------------------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp EEETTCCEECHHHHHHHHHH---T------------------CSBCTTTCCBCCEEEEC
T ss_pred EEeCCCChhhHHHHHHHHhc---C------------------CCCCCCCCCccCCceeE
Confidence 36789999999999888653 0 12599999876665554
No 82
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.24 E-value=67 Score=30.06 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCchHHHHHHHHhcCCchhhhchh---------hHHHHhhhCCC
Q 000158 2 EIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYS---------GIVNFAKNDKS 46 (2014)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~ 46 (2014)
|||.|..++...+-+..+++|+.-|++++...+- .++.|+-+|++
T Consensus 16 d~d~pl~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 16 DIDAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCCSCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CccCCCCCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 4566654434446677889999999999886533 46677776654
No 83
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.18 E-value=19 Score=33.08 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=27.5
Q ss_pred ccccchH-hhHHHHHHHHHHHHHhhhhccccCCCCccCCCCCccccccccccccceeccCC
Q 000158 1428 LSSCGHA-VHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALP 1487 (2014)
Q Consensus 1428 ~SsCGH~-MH~~C~~~Y~~Sl~~R~~~R~~~er~h~~d~e~gEFLCPLCK~L~N~vLPi~P 1487 (2014)
..-|||. +-..|.++ -..||+||+--..++.|+.
T Consensus 30 ~~pCgH~~~C~~C~~~--------------------------~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 30 LLPCRHTCLCDGCVKY--------------------------FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp ETTTTBCCSCTTHHHH--------------------------CSSCTTTCCCCCCEECCCS
T ss_pred EECCCChhhhHHHHhc--------------------------CCCCCCCCcchhceEEeec
Confidence 4579999 99999872 0369999998888888863
No 84
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.00 E-value=7 Score=34.29 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=12.4
Q ss_pred ccccchHhhHHHHHH
Q 000158 1428 LSSCGHAVHQGCLDR 1442 (2014)
Q Consensus 1428 ~SsCGH~MH~~C~~~ 1442 (2014)
+..|||..+..|.++
T Consensus 21 ~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 21 LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSTTSCCSBTTTCSS
T ss_pred EcCCCCcccHHHHcc
Confidence 567999999999655
No 85
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.11 E-value=44 Score=30.65 Aligned_cols=35 Identities=37% Similarity=0.712 Sum_probs=25.1
Q ss_pred cCCceeEEeccCCCCCCccccccccCC----CCCCCceeEEE
Q 000158 123 GNNDIAYRCRTCEHDPTCAICVPCFQN----GNHKEHDYSII 160 (2014)
Q Consensus 123 ~~g~~~y~C~~C~~d~t~~~C~~CF~~----~~H~~H~~~~~ 160 (2014)
-+.+.++||..|.-| .+|..||+. .+-++|+..-+
T Consensus 14 CneDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 14 CNEDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp TCSCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred eCCCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 345788999999866 899999965 22356776543
Done!